Query 041183
Match_columns 760
No_of_seqs 596 out of 3897
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 07:15:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041183.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041183hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.4E-39 1.5E-43 356.6 39.8 497 123-753 63-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4.3E-37 1.5E-41 340.6 37.6 501 25-693 63-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 9.2E-26 3.1E-30 234.8 41.3 371 349-755 6-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 3.3E-25 1.1E-29 230.6 40.6 370 319-696 7-388 (388)
5 4g26_A Pentatricopeptide repea 99.9 4.2E-26 1.4E-30 240.2 21.0 212 359-592 7-223 (501)
6 4g26_A Pentatricopeptide repea 99.9 1.8E-25 6.1E-30 235.5 22.3 183 445-628 28-223 (501)
7 2y4t_A DNAJ homolog subfamily 99.9 3.6E-22 1.2E-26 212.4 34.0 372 341-759 25-443 (450)
8 2gw1_A Mitochondrial precursor 99.9 1.2E-21 4.3E-26 212.1 36.1 423 279-710 9-478 (514)
9 1xi4_A Clathrin heavy chain; a 99.9 2.7E-17 9.1E-22 182.7 60.8 615 48-708 545-1307(1630)
10 2gw1_A Mitochondrial precursor 99.9 2.9E-21 9.8E-26 209.3 28.4 440 213-688 6-490 (514)
11 2y4t_A DNAJ homolog subfamily 99.9 2.3E-20 8E-25 198.3 32.9 324 376-756 25-378 (450)
12 3fp2_A TPR repeat-containing p 99.9 2E-20 7E-25 203.8 31.9 423 277-711 26-492 (537)
13 1xi4_A Clathrin heavy chain; a 99.9 1.6E-16 5.4E-21 176.6 56.8 678 15-755 607-1415(1630)
14 3ieg_A DNAJ homolog subfamily 99.9 7.3E-19 2.5E-23 180.5 35.2 329 377-759 3-358 (359)
15 3fp2_A TPR repeat-containing p 99.9 2.4E-19 8.4E-24 195.2 30.7 408 312-758 26-479 (537)
16 3ieg_A DNAJ homolog subfamily 99.8 1.4E-17 4.9E-22 170.7 32.1 322 342-694 3-353 (359)
17 3hym_B Cell division cycle pro 99.8 1.6E-17 5.3E-22 168.3 30.0 279 409-691 19-314 (330)
18 1b89_A Protein (clathrin heavy 99.8 1.4E-18 4.7E-23 173.5 20.7 367 323-759 15-406 (449)
19 3hym_B Cell division cycle pro 99.8 3.3E-17 1.1E-21 165.9 31.2 264 441-710 20-299 (330)
20 1fch_A Peroxisomal targeting s 99.8 1.4E-17 4.9E-22 171.5 23.5 263 479-759 65-348 (368)
21 1fch_A Peroxisomal targeting s 99.8 5.5E-17 1.9E-21 167.1 25.9 279 423-707 36-356 (368)
22 2xm6_A Protein corresponding t 99.8 1.4E-15 4.9E-20 162.6 36.9 365 310-693 38-452 (490)
23 3mkr_A Coatomer subunit epsilo 99.7 6.9E-16 2.4E-20 151.7 27.9 270 420-703 7-287 (291)
24 2xm6_A Protein corresponding t 99.7 1.3E-14 4.5E-19 155.2 40.3 352 340-712 37-434 (490)
25 4eqf_A PEX5-related protein; a 99.7 1.6E-16 5.4E-21 163.4 24.3 262 480-758 67-344 (365)
26 2ooe_A Cleavage stimulation fa 99.7 8.3E-15 2.8E-19 158.5 38.7 411 275-711 12-493 (530)
27 4eqf_A PEX5-related protein; a 99.7 8.9E-17 3.1E-21 165.2 21.8 259 442-706 64-352 (365)
28 3mkr_A Coatomer subunit epsilo 99.7 3.2E-16 1.1E-20 154.0 23.2 248 450-710 6-264 (291)
29 3cv0_A Peroxisome targeting si 99.7 5.5E-16 1.9E-20 156.6 22.8 259 444-708 22-313 (327)
30 1b89_A Protein (clathrin heavy 99.7 1.7E-15 5.7E-20 151.4 24.3 280 225-536 15-305 (449)
31 3cv0_A Peroxisome targeting si 99.7 1.4E-15 4.9E-20 153.5 23.6 263 477-758 20-303 (327)
32 4g1t_A Interferon-induced prot 99.7 7E-15 2.4E-19 157.0 30.2 327 379-721 96-470 (472)
33 2ooe_A Cleavage stimulation fa 99.7 1.6E-13 5.4E-18 148.4 35.0 404 243-679 12-495 (530)
34 3uq3_A Heat shock protein STI1 99.7 7.5E-15 2.6E-19 142.5 21.8 218 480-710 7-236 (258)
35 4g1t_A Interferon-induced prot 99.6 8E-14 2.7E-18 148.8 28.9 363 311-688 51-471 (472)
36 2pl2_A Hypothetical conserved 99.6 7.6E-15 2.6E-19 137.7 18.5 193 510-708 2-212 (217)
37 3uq3_A Heat shock protein STI1 99.6 3.2E-14 1.1E-18 137.9 19.5 233 445-690 7-256 (258)
38 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.1E-13 3.6E-18 135.8 21.6 241 455-704 17-269 (275)
39 3u4t_A TPR repeat-containing p 99.6 1.7E-13 6E-18 134.0 22.7 245 447-696 7-270 (272)
40 3spa_A Mtrpol, DNA-directed RN 99.6 2.8E-15 9.4E-20 161.7 9.3 110 479-588 128-245 (1134)
41 3spa_A Mtrpol, DNA-directed RN 99.6 1.2E-15 4E-20 164.6 6.3 148 310-457 126-286 (1134)
42 3u4t_A TPR repeat-containing p 99.5 6.9E-13 2.4E-17 129.7 23.1 227 479-710 4-250 (272)
43 2pl2_A Hypothetical conserved 99.5 2.3E-13 7.7E-18 127.6 18.6 187 542-759 3-203 (217)
44 2h6f_A Protein farnesyltransfe 99.5 5.3E-13 1.8E-17 135.5 22.6 243 480-754 99-366 (382)
45 2q7f_A YRRB protein; TPR, prot 99.5 1.6E-13 5.4E-18 131.7 17.9 195 512-710 22-222 (243)
46 3e4b_A ALGK; tetratricopeptide 99.5 1.1E-12 3.8E-17 137.8 24.6 373 283-709 10-420 (452)
47 1ouv_A Conserved hypothetical 99.5 5.2E-12 1.8E-16 123.5 27.0 214 486-711 14-252 (273)
48 3e4b_A ALGK; tetratricopeptide 99.5 2E-12 6.7E-17 135.9 25.1 341 349-711 10-388 (452)
49 2q7f_A YRRB protein; TPR, prot 99.5 5E-13 1.7E-17 128.2 18.4 212 479-695 24-241 (243)
50 2ho1_A Type 4 fimbrial biogene 99.5 2.1E-12 7.2E-17 124.6 22.5 194 514-710 38-238 (252)
51 3vtx_A MAMA; tetratricopeptide 99.5 1.2E-12 4.1E-17 119.3 19.6 164 543-710 4-170 (184)
52 2vq2_A PILW, putative fimbrial 99.5 2.5E-12 8.7E-17 121.5 22.5 195 513-710 8-211 (225)
53 2h6f_A Protein farnesyltransfe 99.5 1.7E-12 5.9E-17 131.7 21.9 244 444-694 98-366 (382)
54 2ho1_A Type 4 fimbrial biogene 99.5 5E-12 1.7E-16 121.9 24.4 204 480-686 39-248 (252)
55 3sf4_A G-protein-signaling mod 99.5 3.6E-13 1.2E-17 140.5 17.3 291 447-757 13-363 (406)
56 1ouv_A Conserved hypothetical 99.5 1.2E-11 4.1E-16 120.8 26.0 226 442-680 5-255 (273)
57 2vq2_A PILW, putative fimbrial 99.5 1E-11 3.5E-16 117.2 23.7 206 479-687 9-222 (225)
58 4abn_A Tetratricopeptide repea 99.5 9.5E-13 3.2E-17 139.2 16.7 208 494-706 84-317 (474)
59 1xnf_A Lipoprotein NLPI; TPR, 99.4 3.7E-12 1.3E-16 124.7 19.4 217 488-710 15-244 (275)
60 4a1s_A PINS, partner of inscut 99.4 7.6E-13 2.6E-17 138.3 15.0 260 449-709 54-371 (411)
61 3ro2_A PINS homolog, G-protein 99.4 5.5E-12 1.9E-16 127.5 19.1 262 449-710 11-332 (338)
62 4abn_A Tetratricopeptide repea 99.4 6.5E-12 2.2E-16 132.8 18.9 199 529-758 84-309 (474)
63 3sf4_A G-protein-signaling mod 99.4 1.9E-12 6.6E-17 134.9 13.7 298 375-699 7-365 (406)
64 4i17_A Hypothetical protein; T 99.4 2E-11 7E-16 115.5 17.7 204 512-753 6-226 (228)
65 3vtx_A MAMA; tetratricopeptide 99.4 2.9E-11 9.8E-16 110.1 17.6 166 512-681 4-175 (184)
66 4gyw_A UDP-N-acetylglucosamine 99.3 2.1E-11 7.1E-16 133.9 18.3 161 544-709 9-173 (723)
67 2ond_A Cleavage stimulation fa 99.3 4E-10 1.4E-14 112.0 25.0 177 530-710 81-270 (308)
68 4a1s_A PINS, partner of inscut 99.3 7.7E-12 2.6E-16 130.6 13.1 271 380-678 51-374 (411)
69 4e6h_A MRNA 3'-END-processing 99.3 4.1E-09 1.4E-13 114.3 33.8 403 273-681 63-575 (679)
70 3nf1_A KLC 1, kinesin light ch 99.3 4.5E-12 1.5E-16 126.6 10.1 164 546-709 113-306 (311)
71 3as5_A MAMA; tetratricopeptide 99.3 7.6E-11 2.6E-15 107.3 17.5 162 546-711 10-174 (186)
72 3ulq_A Response regulator aspa 99.3 7.1E-11 2.4E-15 121.8 18.8 222 487-709 112-367 (383)
73 3ro2_A PINS homolog, G-protein 99.3 9.3E-11 3.2E-15 118.4 19.2 134 546-679 185-335 (338)
74 4e6h_A MRNA 3'-END-processing 99.3 2.6E-08 8.9E-13 108.0 38.0 417 294-713 50-573 (679)
75 3ulq_A Response regulator aspa 99.3 4.4E-10 1.5E-14 115.8 22.7 229 449-677 109-369 (383)
76 1hz4_A MALT regulatory protein 99.3 2.2E-09 7.4E-14 110.2 27.7 258 452-709 23-321 (373)
77 2ond_A Cleavage stimulation fa 99.3 1.1E-09 3.9E-14 108.7 24.7 218 460-682 33-276 (308)
78 4i17_A Hypothetical protein; T 99.3 4.7E-10 1.6E-14 106.0 20.3 205 476-692 5-225 (228)
79 3qky_A Outer membrane assembly 99.2 4E-10 1.4E-14 109.0 18.7 205 512-759 14-250 (261)
80 3nf1_A KLC 1, kinesin light ch 99.2 2.1E-11 7.3E-16 121.6 9.4 201 479-679 70-310 (311)
81 3as5_A MAMA; tetratricopeptide 99.2 8.7E-10 3E-14 100.1 17.7 167 513-683 8-180 (186)
82 3q15_A PSP28, response regulat 99.2 7.9E-09 2.7E-13 106.1 26.1 163 546-709 184-364 (378)
83 3q15_A PSP28, response regulat 99.2 1.9E-09 6.6E-14 110.7 21.3 304 373-677 6-366 (378)
84 4gyw_A UDP-N-acetylglucosamine 99.2 3.9E-10 1.3E-14 123.9 16.2 155 575-758 4-162 (723)
85 3mv2_B Coatomer subunit epsilo 99.1 5.7E-09 1.9E-13 99.9 22.1 39 422-460 23-62 (310)
86 4ga2_A E3 SUMO-protein ligase 99.1 7.3E-11 2.5E-15 102.8 8.2 120 588-710 6-129 (150)
87 1qqe_A Vesicular transport pro 99.1 1.1E-09 3.6E-14 107.8 15.9 185 522-708 46-267 (292)
88 3edt_B KLC 2, kinesin light ch 99.1 1.2E-09 4.1E-14 107.0 14.8 221 489-709 12-280 (283)
89 2pzi_A Probable serine/threoni 99.1 1.8E-09 6.3E-14 119.4 16.2 167 489-661 402-582 (681)
90 4ga2_A E3 SUMO-protein ligase 99.0 4.1E-10 1.4E-14 98.0 8.7 141 551-696 4-149 (150)
91 1qqe_A Vesicular transport pro 99.0 3.6E-09 1.2E-13 104.0 16.2 222 427-687 32-280 (292)
92 3mv2_B Coatomer subunit epsilo 99.0 2.5E-08 8.5E-13 95.5 21.0 168 511-685 98-291 (310)
93 2yhc_A BAMD, UPF0169 lipoprote 99.0 9.3E-09 3.2E-13 96.6 17.7 183 513-715 4-218 (225)
94 2fo7_A Synthetic consensus TPR 99.0 5.2E-09 1.8E-13 89.1 14.4 126 583-710 5-132 (136)
95 3qou_A Protein YBBN; thioredox 99.0 7.6E-09 2.6E-13 101.3 17.1 174 530-708 103-282 (287)
96 3qky_A Outer membrane assembly 99.0 6.1E-09 2.1E-13 100.7 16.0 202 476-699 13-250 (261)
97 1hz4_A MALT regulatory protein 99.0 1.2E-07 4.2E-12 97.0 26.7 88 350-437 22-118 (373)
98 3urz_A Uncharacterized protein 99.0 1.4E-08 4.9E-13 93.9 16.1 156 518-678 9-188 (208)
99 3qou_A Protein YBBN; thioredox 99.0 1.4E-08 4.6E-13 99.4 16.7 153 578-758 116-272 (287)
100 3rjv_A Putative SEL1 repeat pr 99.0 5.8E-08 2E-12 90.0 19.8 171 532-711 5-198 (212)
101 2r5s_A Uncharacterized protein 99.0 6.9E-09 2.4E-13 93.2 13.0 158 547-709 9-172 (176)
102 4gco_A Protein STI-1; structur 98.9 1.2E-08 4.2E-13 85.4 12.8 95 616-710 14-110 (126)
103 3edt_B KLC 2, kinesin light ch 98.9 1.5E-08 5.1E-13 99.1 15.4 200 478-677 43-282 (283)
104 2pzi_A Probable serine/threoni 98.9 5.4E-09 1.8E-13 115.7 13.0 169 524-698 402-585 (681)
105 3urz_A Uncharacterized protein 98.9 3.3E-08 1.1E-12 91.4 15.9 156 550-710 10-186 (208)
106 2fo7_A Synthetic consensus TPR 98.9 3.7E-08 1.3E-12 83.7 14.8 131 546-679 3-135 (136)
107 2vgx_A Chaperone SYCD; alterna 98.9 5.8E-09 2E-13 90.3 9.2 97 614-710 20-118 (148)
108 2vsy_A XCC0866; transferase, g 98.9 2.1E-08 7.3E-13 109.1 16.0 159 526-688 2-169 (568)
109 3gyz_A Chaperone protein IPGC; 98.9 1.3E-08 4.3E-13 87.9 10.7 100 611-710 31-133 (151)
110 2r5s_A Uncharacterized protein 98.9 2.6E-08 9E-13 89.4 13.3 150 581-758 8-161 (176)
111 4gco_A Protein STI-1; structur 98.8 2.6E-08 8.8E-13 83.3 11.3 114 575-690 8-124 (126)
112 2ifu_A Gamma-SNAP; membrane fu 98.8 3.4E-08 1.1E-12 97.9 13.9 218 456-702 4-253 (307)
113 3dra_A Protein farnesyltransfe 98.8 1.2E-06 4E-11 85.1 23.6 210 495-709 50-286 (306)
114 2xcb_A PCRH, regulatory protei 98.8 2.1E-08 7.1E-13 86.3 9.6 96 615-710 18-115 (142)
115 3upv_A Heat shock protein STI1 98.8 4.4E-08 1.5E-12 82.2 11.3 119 615-753 4-124 (126)
116 2qfc_A PLCR protein; TPR, HTH, 98.8 2E-07 6.7E-12 91.7 17.8 164 546-709 77-265 (293)
117 3u3w_A Transcriptional activat 98.8 7.7E-07 2.6E-11 87.4 21.8 161 549-709 80-265 (293)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.1E-07 3.6E-12 88.5 14.9 126 547-678 9-152 (213)
119 2ifu_A Gamma-SNAP; membrane fu 98.8 3.3E-08 1.1E-12 97.9 11.6 196 490-708 3-222 (307)
120 2lni_A Stress-induced-phosphop 98.8 7.9E-08 2.7E-12 81.4 12.4 96 615-710 16-113 (133)
121 2e2e_A Formate-dependent nitri 98.8 6.7E-08 2.3E-12 86.8 12.5 144 589-757 20-168 (177)
122 2vsy_A XCC0866; transferase, g 98.7 2.1E-07 7.1E-12 101.2 17.7 147 558-708 3-155 (568)
123 2vyi_A SGTA protein; chaperone 98.7 8.9E-08 3E-12 80.7 11.5 115 580-696 13-129 (131)
124 2c2l_A CHIP, carboxy terminus 98.7 4.3E-08 1.5E-12 95.5 10.6 191 512-710 3-199 (281)
125 2yhc_A BAMD, UPF0169 lipoprote 98.7 6E-07 2.1E-11 84.1 17.6 184 477-681 3-218 (225)
126 2uy1_A Cleavage stimulation fa 98.7 1.5E-05 5.1E-10 83.9 29.8 338 325-675 28-412 (493)
127 1a17_A Serine/threonine protei 98.7 2E-07 6.7E-12 82.6 13.3 127 581-709 15-145 (166)
128 1na0_A Designed protein CTPR3; 98.7 2.3E-07 8E-12 77.3 12.9 112 580-693 10-123 (125)
129 4f3v_A ESX-1 secretion system 98.7 8.6E-08 2.9E-12 90.6 10.3 123 585-710 108-237 (282)
130 3rjv_A Putative SEL1 repeat pr 98.7 1.9E-06 6.4E-11 79.7 19.4 172 497-678 5-199 (212)
131 3sz7_A HSC70 cochaperone (SGT) 98.7 1.2E-07 4.1E-12 83.9 10.7 108 579-688 11-120 (164)
132 1p5q_A FKBP52, FK506-binding p 98.6 1.3E-07 4.4E-12 94.7 12.0 94 615-708 196-292 (336)
133 3q49_B STIP1 homology and U bo 98.6 2.6E-07 8.7E-12 78.8 12.2 98 613-710 7-106 (137)
134 1na0_A Designed protein CTPR3; 98.6 3.2E-07 1.1E-11 76.4 12.4 95 616-710 10-106 (125)
135 2vyi_A SGTA protein; chaperone 98.6 2.9E-07 9.9E-12 77.5 12.2 93 617-709 14-108 (131)
136 1hh8_A P67PHOX, NCF-2, neutrop 98.6 6.2E-07 2.1E-11 83.3 15.6 127 516-646 9-153 (213)
137 2lni_A Stress-induced-phosphop 98.6 3E-07 1E-11 77.7 12.3 116 579-696 16-133 (133)
138 2fbn_A 70 kDa peptidylprolyl i 98.6 5.5E-08 1.9E-12 89.2 7.7 148 552-701 12-176 (198)
139 3dra_A Protein farnesyltransfe 98.6 2.2E-05 7.6E-10 76.0 26.3 225 458-689 48-301 (306)
140 3rkv_A Putative peptidylprolyl 98.6 3E-07 1E-11 81.1 11.7 87 646-758 62-149 (162)
141 1elw_A TPR1-domain of HOP; HOP 98.6 6.8E-07 2.3E-11 73.5 13.0 95 616-710 5-101 (118)
142 2kck_A TPR repeat; tetratricop 98.6 4.3E-07 1.5E-11 73.9 10.9 99 614-712 5-108 (112)
143 3gyz_A Chaperone protein IPGC; 98.6 4.9E-07 1.7E-11 77.9 11.5 105 575-681 31-138 (151)
144 1hxi_A PEX5, peroxisome target 98.6 2.4E-07 8.2E-12 76.7 9.0 94 617-710 19-114 (121)
145 2vgx_A Chaperone SYCD; alterna 98.5 1.5E-07 5.1E-12 81.3 7.9 117 566-686 9-128 (148)
146 2dba_A Smooth muscle cell asso 98.5 1.2E-06 4.2E-11 75.6 13.8 96 615-710 28-128 (148)
147 1p5q_A FKBP52, FK506-binding p 98.5 3.9E-07 1.3E-11 91.2 12.0 86 647-758 196-281 (336)
148 4gcn_A Protein STI-1; structur 98.5 4.2E-07 1.4E-11 76.1 10.3 95 616-710 9-112 (127)
149 1elr_A TPR2A-domain of HOP; HO 98.5 6.7E-07 2.3E-11 75.2 11.3 117 616-759 5-130 (131)
150 4f3v_A ESX-1 secretion system 98.5 1.6E-06 5.3E-11 82.0 14.6 193 490-688 18-248 (282)
151 1a17_A Serine/threonine protei 98.5 1.4E-06 4.9E-11 76.9 13.5 96 615-710 13-110 (166)
152 3u3w_A Transcriptional activat 98.5 1E-05 3.6E-10 79.2 20.5 158 519-676 81-266 (293)
153 2fbn_A 70 kDa peptidylprolyl i 98.5 1E-06 3.4E-11 80.7 11.8 149 523-675 14-185 (198)
154 2hr2_A Hypothetical protein; a 98.5 1.6E-07 5.3E-12 79.8 5.7 64 647-710 57-131 (159)
155 2xev_A YBGF; tetratricopeptide 98.5 1.4E-06 4.8E-11 73.1 11.6 92 619-710 6-105 (129)
156 2xcb_A PCRH, regulatory protei 98.5 4.2E-07 1.4E-11 78.0 8.3 114 575-690 13-129 (142)
157 1elw_A TPR1-domain of HOP; HOP 98.5 2.4E-06 8.1E-11 70.2 12.6 110 580-691 5-116 (118)
158 2uy1_A Cleavage stimulation fa 98.4 1.9E-05 6.6E-10 83.0 22.4 357 324-709 7-412 (493)
159 3gw4_A Uncharacterized protein 98.4 3.9E-06 1.3E-10 77.0 14.3 93 617-709 68-175 (203)
160 2qfc_A PLCR protein; TPR, HTH, 98.4 5.9E-06 2E-10 81.0 16.3 162 515-676 77-266 (293)
161 3upv_A Heat shock protein STI1 98.4 2E-06 7E-11 71.8 11.1 111 580-692 5-123 (126)
162 2e2e_A Formate-dependent nitri 98.4 1.4E-06 4.9E-11 78.0 10.6 127 555-685 21-153 (177)
163 3k9i_A BH0479 protein; putativ 98.4 3.5E-07 1.2E-11 75.3 5.9 83 628-710 3-90 (117)
164 3q7a_A Farnesyltransferase alp 98.4 5.6E-05 1.9E-09 74.0 21.9 211 495-710 71-331 (349)
165 2dba_A Smooth muscle cell asso 98.4 4.7E-06 1.6E-10 71.8 13.1 112 579-693 28-145 (148)
166 3sz7_A HSC70 cochaperone (SGT) 98.4 2.7E-06 9.1E-11 75.0 11.6 95 615-709 11-107 (164)
167 2c2l_A CHIP, carboxy terminus 98.3 2.6E-06 9E-11 82.7 11.5 177 543-754 3-182 (281)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 4.4E-06 1.5E-10 87.4 13.7 146 559-709 249-414 (457)
169 4gcn_A Protein STI-1; structur 98.3 1E-06 3.4E-11 73.7 6.7 93 647-758 8-100 (127)
170 1wao_1 Serine/threonine protei 98.3 1.6E-06 5.5E-11 91.2 9.8 118 587-706 14-135 (477)
171 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 3E-06 1E-10 88.8 11.8 128 544-675 268-414 (457)
172 1ihg_A Cyclophilin 40; ppiase 98.3 3.8E-06 1.3E-10 84.9 11.9 135 579-757 223-357 (370)
173 3dss_A Geranylgeranyl transfer 98.3 0.00029 9.9E-09 68.6 24.6 177 530-710 91-304 (331)
174 3q49_B STIP1 homology and U bo 98.3 3.9E-06 1.3E-10 71.3 9.9 113 578-692 8-127 (137)
175 2l6j_A TPR repeat-containing p 98.2 9.7E-06 3.3E-10 65.6 10.9 61 648-708 5-65 (111)
176 2if4_A ATFKBP42; FKBP-like, al 98.2 2.8E-06 9.5E-11 85.0 8.7 148 544-711 179-329 (338)
177 3q7a_A Farnesyltransferase alp 98.2 0.00068 2.3E-08 66.4 25.2 230 454-689 65-345 (349)
178 1hxi_A PEX5, peroxisome target 98.2 1.2E-05 4E-10 66.4 10.3 85 649-759 19-103 (121)
179 1wao_1 Serine/threonine protei 98.2 2.9E-06 1E-10 89.2 8.1 116 618-759 9-128 (477)
180 2kck_A TPR repeat; tetratricop 98.2 1.2E-05 4.2E-10 65.0 10.3 100 580-681 7-111 (112)
181 3ro3_A PINS homolog, G-protein 98.2 8.5E-06 2.9E-10 71.4 9.9 128 582-709 12-157 (164)
182 3gw4_A Uncharacterized protein 98.1 2.5E-05 8.5E-10 71.5 13.4 96 581-676 68-176 (203)
183 1elr_A TPR2A-domain of HOP; HO 98.1 8.2E-06 2.8E-10 68.3 9.2 111 581-694 6-125 (131)
184 2xev_A YBGF; tetratricopeptide 98.1 2.9E-05 1E-09 64.8 12.5 106 585-692 8-121 (129)
185 2hr2_A Hypothetical protein; a 98.1 2.6E-06 8.9E-11 72.3 5.7 73 617-689 59-144 (159)
186 4b4t_Q 26S proteasome regulato 98.1 2.7E-05 9.2E-10 81.3 14.8 163 547-709 58-244 (434)
187 1na3_A Designed protein CTPR2; 98.1 1.4E-05 4.8E-10 61.9 9.4 64 647-710 9-72 (91)
188 3rkv_A Putative peptidylprolyl 98.1 6.3E-06 2.1E-10 72.4 8.1 79 615-693 63-144 (162)
189 1dce_A Protein (RAB geranylger 98.1 8.7E-05 3E-09 79.4 18.3 167 529-699 45-244 (567)
190 3dss_A Geranylgeranyl transfer 98.1 0.00055 1.9E-08 66.7 22.2 193 494-692 90-320 (331)
191 2l6j_A TPR repeat-containing p 98.1 1.5E-06 5.2E-11 70.6 3.5 94 614-707 3-104 (111)
192 3k9i_A BH0479 protein; putativ 98.1 3.1E-06 1.1E-10 69.5 5.4 95 591-686 2-100 (117)
193 2if4_A ATFKBP42; FKBP-like, al 98.1 5.7E-06 1.9E-10 82.7 8.1 116 579-711 179-294 (338)
194 1ihg_A Cyclophilin 40; ppiase 98.1 1.2E-05 4.2E-10 81.2 10.6 139 544-703 223-363 (370)
195 3ma5_A Tetratricopeptide repea 98.1 1.5E-05 5.1E-10 63.1 8.8 67 644-710 4-70 (100)
196 3n71_A Histone lysine methyltr 98.0 2.6E-05 9E-10 81.2 11.3 128 589-716 319-470 (490)
197 3bee_A Putative YFRE protein; 98.0 4.5E-05 1.5E-09 58.8 9.7 69 644-712 3-74 (93)
198 2kat_A Uncharacterized protein 97.9 2.5E-05 8.6E-10 63.7 8.2 78 633-710 3-82 (115)
199 4b4t_Q 26S proteasome regulato 97.9 0.00011 3.6E-09 76.7 14.1 158 552-709 12-203 (434)
200 3ro3_A PINS homolog, G-protein 97.9 5E-05 1.7E-09 66.3 9.8 133 546-678 11-160 (164)
201 1na3_A Designed protein CTPR2; 97.9 4.3E-05 1.5E-09 59.0 8.3 81 615-695 9-91 (91)
202 1zu2_A Mitochondrial import re 97.9 1.1E-05 3.8E-10 68.3 4.7 84 628-711 15-121 (158)
203 3n71_A Histone lysine methyltr 97.9 9.2E-05 3.1E-09 77.1 12.6 116 624-757 318-451 (490)
204 1dce_A Protein (RAB geranylger 97.7 0.00033 1.1E-08 74.9 14.6 151 558-712 43-223 (567)
205 1klx_A Cysteine rich protein B 97.7 0.0004 1.4E-08 58.6 12.1 110 594-711 10-127 (138)
206 3lvg_A Clathrin heavy chain 1; 97.6 4.5E-05 1.5E-09 75.5 4.6 130 30-170 40-170 (624)
207 2kc7_A BFR218_protein; tetratr 97.6 0.0002 7E-09 56.2 7.6 63 622-684 7-72 (99)
208 1zu2_A Mitochondrial import re 97.5 0.00011 3.8E-09 62.2 5.8 110 593-711 16-148 (158)
209 2kat_A Uncharacterized protein 97.5 0.00023 7.7E-09 57.9 7.1 81 597-679 3-85 (115)
210 3qwp_A SET and MYND domain-con 97.5 0.00041 1.4E-08 71.1 10.2 114 625-756 297-428 (429)
211 3lvg_A Clathrin heavy chain 1; 97.4 5.5E-05 1.9E-09 74.9 2.1 261 112-463 53-324 (624)
212 1klx_A Cysteine rich protein B 97.3 0.0026 9E-08 53.4 11.7 112 558-678 9-128 (138)
213 3ly7_A Transcriptional activat 97.3 0.0049 1.7E-07 60.2 14.7 137 542-680 192-343 (372)
214 3qww_A SET and MYND domain-con 97.3 0.00047 1.6E-08 70.5 7.8 103 628-748 311-431 (433)
215 2kc7_A BFR218_protein; tetratr 97.2 0.00039 1.3E-08 54.5 5.7 56 655-710 8-64 (99)
216 1pc2_A Mitochondria fission pr 97.1 0.0024 8.3E-08 53.3 9.4 65 645-709 30-99 (152)
217 3ma5_A Tetratricopeptide repea 97.1 0.00081 2.8E-08 52.9 5.9 65 614-678 6-72 (100)
218 3ly7_A Transcriptional activat 97.0 0.0045 1.6E-07 60.4 11.8 132 576-711 191-340 (372)
219 3qww_A SET and MYND domain-con 97.0 0.0032 1.1E-07 64.3 10.9 95 591-685 310-425 (433)
220 3qwp_A SET and MYND domain-con 96.9 0.0066 2.2E-07 62.2 12.7 102 586-687 294-416 (429)
221 3u64_A Protein TP_0956; tetrat 96.9 0.013 4.5E-07 54.7 13.1 86 631-716 179-275 (301)
222 1wy6_A Hypothetical protein ST 96.7 0.17 6E-06 40.4 15.7 140 555-713 18-157 (172)
223 2v5f_A Prolyl 4-hydroxylase su 96.6 0.01 3.4E-07 46.8 9.0 73 616-688 6-87 (104)
224 2v5f_A Prolyl 4-hydroxylase su 96.6 0.022 7.7E-07 44.7 10.7 65 646-710 4-75 (104)
225 1qsa_A Protein (soluble lytic 96.4 1.1 3.9E-05 47.6 25.4 114 559-675 229-347 (618)
226 1pc2_A Mitochondria fission pr 96.3 0.015 5.2E-07 48.5 8.3 90 595-686 14-110 (152)
227 3mkq_A Coatomer beta'-subunit; 96.1 0.39 1.3E-05 54.2 21.7 167 350-569 607-774 (814)
228 3bee_A Putative YFRE protein; 96.0 0.043 1.5E-06 41.9 9.1 68 612-679 3-75 (93)
229 3mkq_A Coatomer beta'-subunit; 95.7 0.32 1.1E-05 55.0 18.8 45 524-570 663-707 (814)
230 1nzn_A CGI-135 protein, fissio 95.6 0.072 2.5E-06 42.7 8.9 88 594-683 16-110 (126)
231 3u64_A Protein TP_0956; tetrat 95.1 0.021 7.2E-07 53.3 4.9 105 595-708 179-296 (301)
232 4gns_B Protein CSD3, chitin bi 95.0 0.092 3.1E-06 57.0 10.5 55 654-708 344-398 (754)
233 1nzn_A CGI-135 protein, fissio 94.9 0.24 8.3E-06 39.6 10.0 65 645-709 33-102 (126)
234 4ady_A RPN2, 26S proteasome re 94.8 6.5 0.00022 43.7 27.9 302 346-657 343-671 (963)
235 3o48_A Mitochondria fission 1 94.7 0.18 6.3E-06 40.4 8.8 68 643-710 36-107 (134)
236 1y8m_A FIS1; mitochondria, unk 94.7 0.68 2.3E-05 37.8 12.1 65 645-709 37-105 (144)
237 3ffl_A Anaphase-promoting comp 94.5 0.18 6.2E-06 42.4 8.6 139 573-752 12-166 (167)
238 3mkq_B Coatomer subunit alpha; 94.5 2.1 7.1E-05 36.7 16.5 100 422-538 15-114 (177)
239 1wy6_A Hypothetical protein ST 94.0 1.9 6.6E-05 34.6 13.6 60 547-607 94-153 (172)
240 4ady_A RPN2, 26S proteasome re 93.8 10 0.00035 42.2 29.5 249 421-675 383-657 (963)
241 3lpz_A GET4 (YOR164C homolog); 92.8 2.9 0.0001 40.1 14.8 132 16-158 36-181 (336)
242 4h7y_A Dual specificity protei 92.7 0.76 2.6E-05 37.8 9.0 58 629-686 74-133 (161)
243 3mkq_B Coatomer subunit alpha; 92.3 4.9 0.00017 34.4 17.4 43 525-569 17-59 (177)
244 4h7y_A Dual specificity protei 92.1 1.1 3.8E-05 36.8 9.3 54 659-712 72-125 (161)
245 2wpv_A GET4, UPF0363 protein Y 90.4 13 0.00043 35.5 17.7 111 315-436 37-158 (312)
246 3ffl_A Anaphase-promoting comp 89.7 1.9 6.7E-05 36.2 8.9 28 615-642 122-149 (167)
247 3o48_A Mitochondria fission 1 89.0 1.8 6.2E-05 34.8 7.9 75 612-686 37-117 (134)
248 1y8m_A FIS1; mitochondria, unk 88.5 4.8 0.00016 32.8 10.1 74 612-685 36-115 (144)
249 3lpz_A GET4 (YOR164C homolog); 88.4 18 0.00062 34.7 21.7 168 515-709 37-215 (336)
250 2ff4_A Probable regulatory pro 88.3 1.2 4.2E-05 44.6 8.3 69 649-717 173-246 (388)
251 1v54_E Cytochrome C oxidase po 87.4 3.4 0.00012 31.1 7.8 63 559-623 25-87 (109)
252 1zbp_A Hypothetical protein VP 87.2 5 0.00017 36.9 10.6 118 553-682 6-135 (273)
253 4b4t_P 26S proteasome regulato 86.9 22 0.00074 36.2 16.8 185 456-641 29-244 (445)
254 4fhn_B Nucleoporin NUP120; pro 86.7 7.8 0.00027 45.3 14.9 144 482-633 816-989 (1139)
255 2p58_C Putative type III secre 86.1 9 0.00031 28.7 9.4 86 493-583 22-107 (116)
256 3txn_A 26S proteasome regulato 86.1 12 0.00042 37.0 13.8 163 479-641 20-207 (394)
257 2uwj_G Type III export protein 84.5 8.4 0.00029 28.8 8.5 86 493-583 21-106 (115)
258 2qx5_A Nucleoporin NIC96; mRNA 84.0 38 0.0013 36.2 17.2 85 448-543 299-386 (661)
259 2wpv_A GET4, UPF0363 protein Y 83.9 30 0.001 32.9 20.7 171 514-710 34-217 (312)
260 2y69_E Cytochrome C oxidase su 81.7 7.2 0.00025 31.2 7.8 63 559-623 68-130 (152)
261 4gns_B Protein CSD3, chitin bi 81.7 14 0.00046 40.3 12.9 53 487-540 346-398 (754)
262 3eiq_C Programmed cell death p 81.6 10 0.00035 36.9 10.8 27 217-243 221-247 (358)
263 1wdy_A 2-5A-dependent ribonucl 81.2 16 0.00056 34.0 12.6 18 220-237 223-240 (285)
264 1v54_E Cytochrome C oxidase po 80.0 8.5 0.00029 29.0 7.2 59 360-419 28-86 (109)
265 2uwj_G Type III export protein 79.8 15 0.00052 27.5 8.4 50 222-271 48-98 (115)
266 2ff4_A Probable regulatory pro 79.6 9.2 0.00031 38.2 10.3 70 547-618 174-248 (388)
267 4b4t_P 26S proteasome regulato 79.4 57 0.002 33.1 21.1 143 426-571 30-204 (445)
268 2p58_C Putative type III secre 79.3 16 0.00055 27.4 8.4 50 222-271 49-99 (116)
269 1zbp_A Hypothetical protein VP 78.5 4.2 0.00014 37.4 6.5 56 624-679 6-63 (273)
270 4fhn_B Nucleoporin NUP120; pro 78.3 14 0.00049 43.0 12.8 81 617-698 901-988 (1139)
271 1n11_A Ankyrin; clathrin, BAND 77.6 53 0.0018 33.1 15.8 150 19-179 15-174 (437)
272 3ljn_A Hypothetical protein; a 76.1 14 0.00046 36.5 10.5 15 224-238 252-266 (364)
273 4b4t_R RPN7, 26S proteasome re 73.0 29 0.00099 35.1 12.0 93 515-607 133-236 (429)
274 4b4t_R RPN7, 26S proteasome re 69.7 19 0.00066 36.4 9.8 58 618-675 134-196 (429)
275 4g8k_A 2-5A-dependent ribonucl 69.1 54 0.0018 31.5 12.8 59 19-81 26-87 (337)
276 2y69_E Cytochrome C oxidase su 66.2 25 0.00084 28.2 7.2 59 361-420 72-130 (152)
277 1wdy_A 2-5A-dependent ribonucl 66.2 82 0.0028 29.0 15.3 46 290-335 193-240 (285)
278 1n11_A Ankyrin; clathrin, BAND 64.6 1.2E+02 0.0041 30.4 17.5 110 52-168 17-134 (437)
279 3eiq_C Programmed cell death p 64.3 35 0.0012 33.2 9.8 67 516-582 220-291 (358)
280 3eu9_A Huntingtin-interacting 63.7 33 0.0011 30.8 9.5 166 2-178 24-204 (240)
281 3eu9_A Huntingtin-interacting 62.8 51 0.0018 29.4 10.7 147 22-178 13-170 (240)
282 3ltm_A Alpha-REP4; protein eng 62.7 79 0.0027 27.7 18.5 153 512-675 32-184 (211)
283 4g8k_A 2-5A-dependent ribonucl 62.5 1.1E+02 0.0038 29.2 14.8 104 296-411 219-328 (337)
284 4b4t_S RPN3, 26S proteasome re 62.1 32 0.0011 35.2 9.4 65 616-680 232-303 (523)
285 3esl_A Checkpoint serine/threo 61.1 79 0.0027 27.6 10.3 67 611-677 73-145 (202)
286 2zu6_B Programmed cell death p 60.9 15 0.0005 35.0 6.3 57 18-74 6-66 (307)
287 3kea_A K1L; tropism, ANK repea 60.7 73 0.0025 29.7 11.5 63 99-161 76-143 (285)
288 1qsa_A Protein (soluble lytic 58.5 1.9E+02 0.0065 30.7 34.4 363 315-702 76-471 (618)
289 2f8y_A Notch homolog 1, transl 57.6 36 0.0012 30.2 8.5 165 2-178 6-185 (223)
290 3kea_A K1L; tropism, ANK repea 57.1 15 0.00053 34.5 6.0 161 5-171 18-185 (285)
291 3esl_A Checkpoint serine/threo 56.9 80 0.0027 27.5 9.6 66 546-613 82-148 (202)
292 2nsz_A Programmed cell death p 55.5 25 0.00085 28.3 6.0 62 17-78 9-75 (129)
293 2xai_A ASB-9, ankyrin repeat a 53.0 54 0.0018 30.1 9.0 37 4-40 20-58 (261)
294 3ltj_A Alpharep-4; protein eng 50.4 1.2E+02 0.0042 26.1 19.2 154 511-675 26-179 (201)
295 2nsz_A Programmed cell death p 49.9 80 0.0027 25.3 8.2 64 516-579 10-78 (129)
296 3mv2_A Coatomer subunit alpha; 49.1 1.1E+02 0.0038 29.0 9.9 60 637-710 195-256 (325)
297 3txn_A 26S proteasome regulato 48.4 2.1E+02 0.0072 28.2 22.7 124 413-537 20-163 (394)
298 2ion_A PDCD4, programmed cell 46.7 24 0.00081 29.4 4.6 61 17-77 11-76 (152)
299 3b7b_A Euchromatic histone-lys 46.2 76 0.0026 28.3 8.8 165 2-178 26-204 (237)
300 4b4t_S RPN3, 26S proteasome re 43.3 69 0.0024 32.9 8.2 63 647-711 231-300 (523)
301 4a1g_A Mitotic checkpoint seri 42.3 1.5E+02 0.005 24.6 9.6 29 680-708 100-128 (152)
302 3hra_A Ankyrin repeat family p 42.1 1.6E+02 0.0056 25.1 10.4 16 124-139 13-28 (201)
303 2ion_A PDCD4, programmed cell 42.0 70 0.0024 26.5 6.8 64 516-579 12-80 (152)
304 2zu6_B Programmed cell death p 41.4 66 0.0023 30.5 7.4 200 217-418 7-243 (307)
305 3ljn_A Hypothetical protein; a 40.8 90 0.0031 30.3 8.9 40 99-138 67-106 (364)
306 3ltj_A Alpharep-4; protein eng 40.2 1.8E+02 0.0061 25.0 19.7 17 578-594 151-167 (201)
307 3ltm_A Alpha-REP4; protein eng 39.4 1.9E+02 0.0065 25.1 19.4 9 585-593 163-171 (211)
308 3hra_A Ankyrin repeat family p 39.1 1.8E+02 0.0062 24.8 13.2 151 22-179 9-173 (201)
309 3ygs_P Procaspase 9; apoptosis 38.6 52 0.0018 24.7 5.0 62 2-65 26-87 (97)
310 3utm_A Tankyrase-1; tankyrase, 38.5 2.6E+02 0.009 26.4 14.0 20 21-40 27-46 (351)
311 1ug3_A EIF4GI, eukaryotic prot 37.8 54 0.0019 31.7 6.4 60 18-77 14-77 (339)
312 3d9h_A CDNA FLJ77766, highly s 37.5 1.3E+02 0.0043 28.0 9.0 116 19-141 60-182 (285)
313 2wvi_A Mitotic checkpoint seri 37.2 1.9E+02 0.0063 24.3 9.5 67 611-677 59-126 (164)
314 1wgl_A TOLL-interacting protei 36.7 30 0.001 23.2 3.0 48 668-716 11-58 (59)
315 2rfa_A Transient receptor pote 36.5 2.2E+02 0.0075 25.0 11.1 155 19-177 4-184 (232)
316 3re2_A Predicted protein; meni 35.7 1.4E+02 0.0049 28.5 8.3 29 680-708 295-323 (472)
317 1bd8_A P19INK4D CDK4/6 inhibit 34.5 1.8E+02 0.0062 23.4 9.3 138 20-167 4-153 (156)
318 2etb_A Transient receptor pote 32.7 63 0.0021 29.4 5.9 88 53-141 6-115 (256)
319 3u84_A Menin; MLL, JUND, ledgf 32.7 1.6E+02 0.0056 28.8 8.3 55 679-754 316-371 (550)
320 4gq2_M Nucleoporin NUP120; bet 32.5 2.3E+02 0.0078 32.1 11.3 47 648-694 898-949 (950)
321 1ya0_A SMG-7 transcript varian 31.8 1.2E+02 0.004 31.2 8.0 71 621-691 158-230 (497)
322 3v31_A Ankyrin repeat family A 31.1 2.2E+02 0.0075 23.3 9.3 142 22-171 7-159 (167)
323 1k1a_A B-cell lymphoma 3-encod 30.2 2.8E+02 0.0097 24.3 12.5 29 151-179 13-41 (241)
324 3aji_A 26S proteasome non-ATPa 28.9 2.8E+02 0.0094 24.3 9.5 148 19-178 7-166 (231)
325 3utm_A Tankyrase-1; tankyrase, 28.4 3.8E+02 0.013 25.2 13.6 20 20-39 60-79 (351)
326 3b7b_A Euchromatic histone-lys 28.3 2E+02 0.0067 25.4 8.4 149 19-179 12-172 (237)
327 2d2s_A Exocyst complex compone 28.1 1.6E+02 0.0056 26.4 7.4 21 349-369 25-45 (235)
328 3jxi_A Vanilloid receptor-rela 27.8 1.7E+02 0.0059 26.4 8.1 20 318-337 97-116 (260)
329 1oyz_A Hypothetical protein YI 27.0 3.6E+02 0.012 24.5 22.3 24 654-678 242-265 (280)
330 2r9g_A AAA ATPase, central reg 26.3 3.2E+02 0.011 23.7 9.4 39 555-594 25-63 (204)
331 1s70_B 130 kDa myosin-binding 26.1 2E+02 0.0068 26.6 8.3 22 20-41 42-63 (299)
332 4a1g_A Mitotic checkpoint seri 26.0 2.8E+02 0.0095 22.9 9.4 51 562-613 83-134 (152)
333 2p1h_A APAF-1, apoptotic prote 25.6 2E+02 0.0069 21.1 7.1 60 499-562 26-85 (94)
334 2d2s_A Exocyst complex compone 25.6 2.2E+02 0.0074 25.7 7.7 29 680-708 90-118 (235)
335 1oyz_A Hypothetical protein YI 25.1 3.9E+02 0.013 24.3 23.2 60 644-709 203-262 (280)
336 1bpo_A Protein (clathrin); cla 25.1 2.1E+02 0.0072 28.8 7.9 70 7-76 353-425 (494)
337 1yyh_A HN1;, notch 1, ankyrin 25.1 1.8E+02 0.0062 26.2 7.6 132 3-141 39-182 (253)
338 3l6a_A Eukaryotic translation 24.6 1E+02 0.0035 30.1 5.8 121 19-139 16-148 (364)
339 3jxi_A Vanilloid receptor-rela 24.5 1.3E+02 0.0044 27.3 6.5 88 53-141 9-118 (260)
340 3crd_A Raidd; caspase recruitm 24.0 1.7E+02 0.0058 22.0 5.8 47 27-76 47-93 (100)
341 2fe3_A Peroxide operon regulat 23.8 1.7E+02 0.0057 23.8 6.2 59 570-630 13-71 (145)
342 3bu8_A Telomeric repeat-bindin 23.6 2.1E+02 0.0071 25.2 6.6 20 622-641 121-140 (235)
343 2rfa_A Transient receptor pote 23.5 3.7E+02 0.013 23.4 10.5 54 383-437 157-219 (232)
344 2p1h_A APAF-1, apoptotic prote 22.9 1E+02 0.0035 22.8 4.3 34 28-61 49-82 (94)
345 3bge_A Predicted ATPase; struc 22.4 3.6E+02 0.012 23.3 7.9 39 556-594 19-57 (201)
346 4hbd_A KN motif and ankyrin re 21.4 4.7E+02 0.016 23.8 9.8 56 21-76 114-173 (276)
347 4gq2_M Nucleoporin NUP120; bet 21.0 5.5E+02 0.019 29.0 11.7 53 417-470 815-867 (950)
348 2fu4_A Ferric uptake regulatio 21.0 2.3E+02 0.0077 20.0 6.3 61 366-427 6-67 (83)
349 3twr_A Tankyrase-2; ankyrin re 20.4 3.2E+02 0.011 22.1 7.8 123 50-178 9-135 (165)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.4e-39 Score=356.57 Aligned_cols=497 Identities=12% Similarity=0.014 Sum_probs=400.5
Q ss_pred HHhcCChhhHHHHhhhcCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHhccCccchhhHHHHH
Q 041183 123 YAKSGEIVSAEMCFRDCLDLDNVAYTAMVCGYVWNGEFDKSKEVFVEMRSLGLELNEFSLTAVLGASFDVKEGEQIHGFG 202 (760)
Q Consensus 123 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~ 202 (760)
+.+.|....+...+..++.++...|+.++..+.+.|++++|+.+|++|.+.. |+..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~-------------------- 120 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDA-------------------- 120 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHH--------------------
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHH--------------------
Confidence 4456777778888888887888899999999999999999999999998543 555444
Q ss_pred HhhccCCCcchhHHHHHHHHhHhcCCHHHHHHHhccCCCCCcchHHHHHHhhcChhHHHHHHHHHhhCCccCCcchHHHH
Q 041183 203 VKVGFLSGVCNHLNNAIMNLYVRCGQKLDAVKMFDEITEPDVVSWSERIAAACDGVEAFGLFKDLRFNDFQINEYTMINL 282 (760)
Q Consensus 203 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 282 (760)
..++.+|.+.|++++|..+|+++..
T Consensus 121 --------------~~l~~~~~~~g~~~~A~~~~~~~~~----------------------------------------- 145 (597)
T 2xpi_A 121 --------------FWLAQVYCCTGDYARAKCLLTKEDL----------------------------------------- 145 (597)
T ss_dssp --------------HHHHHHHHHTTCHHHHHHHHHHTCG-----------------------------------------
T ss_pred --------------HHHHHHHHHcCcHHHHHHHHHHHhc-----------------------------------------
Confidence 7788889999999999988887641
Q ss_pred HHhhcCCCcchHHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcCCCC-------------------Cee
Q 041183 283 LSSVGGERILRAGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYLIFK-------------------DSV 343 (760)
Q Consensus 283 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~ 343 (760)
.+++..+++.++.+|.+.|++++|.++|+++... +..
T Consensus 146 ------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (597)
T 2xpi_A 146 ------------------------YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEAS 201 (597)
T ss_dssp ------------------------GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHH
T ss_pred ------------------------cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHH
Confidence 1234445567777777777888888777754332 477
Q ss_pred eHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCcCCHHHHHH--H-HHHHHHhCCCCChhHHHHHH
Q 041183 344 SWNSMIAGYSENGFFNQALDMFCHMLEFSLIP-NGYTMASILEAVSNSKSLKQAMQ--V-HSHIIKSGFLLDDSMISCLI 419 (760)
Q Consensus 344 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~~~~~~l~ 419 (760)
+|+.++.+|.+.|++++|.+.|++|.+.+ | +...+..+...+...+..+.+.. + +..+...+..+...+++.++
T Consensus 202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 202 MCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHH
Confidence 89999999999999999999999999853 4 34455555555544433322211 1 44444444455566777778
Q ss_pred HHHHhcCChHHHHHHHhhcCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHH
Q 041183 420 TTYGKCNALNESKRVLSEIDK--KNAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQG 497 (760)
Q Consensus 420 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 497 (760)
..|.+.|++++|.++|+++.+ ++..+++.++.+|.+.|++++|.++|+++.+.+. .+..++..++.++...|+++.|
T Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A 358 (597)
T 2xpi_A 280 NKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKL 358 (597)
T ss_dssp CTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHH
T ss_pred HHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHH
Confidence 899999999999999999987 6889999999999999999999999999988763 3778899999999999999999
Q ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 041183 498 KAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFG 574 (760)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 574 (760)
..+++++.+.. +.+..++..++..|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|++++|+++|+++.+.+
T Consensus 359 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 359 YLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp HHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999765 4678899999999999999999999999874 4567799999999999999999999999999852
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-------CCCCC-
Q 041183 575 VKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM-------PIPPD- 646 (760)
Q Consensus 575 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~- 646 (760)
+++..++..++.+|.+.|++++|.++|+.+.+ ..+.+..+|..++.+|.+.|++++|.++|+++ +..|+
T Consensus 438 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~ 514 (597)
T 2xpi_A 438 -QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA--LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514 (597)
T ss_dssp -TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred -ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh
Confidence 23678999999999999999999999999988 24457889999999999999999999999988 34677
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECC
Q 041183 647 -AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGG 725 (760)
Q Consensus 647 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (760)
..+|..++.+|.+.|++++|++.+++++++.|+++.+|..++.+|.+.|++++|.++++++.+.
T Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------------- 579 (597)
T 2xpi_A 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI--------------- 579 (597)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---------------
Confidence 7899999999999999999999999999999999999999999999999999999999999876
Q ss_pred EEEEEEcCCCCCCChHHHHHHHHHHHHH
Q 041183 726 YTHHFYAGDSSHSQSKEIYKELIKLYEH 753 (760)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (760)
+|+..+.+..++++|.+
T Consensus 580 -----------~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 580 -----------SPNEIMASDLLKRALEE 596 (597)
T ss_dssp -----------CTTCHHHHHHHHHTTC-
T ss_pred -----------CCCChHHHHHHHHHHhc
Confidence 67777888888777653
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.3e-37 Score=340.59 Aligned_cols=501 Identities=10% Similarity=-0.047 Sum_probs=301.0
Q ss_pred hhccCChhHHHHhhhcCCCCCcchHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCcccHHHHHHHhcCCCchhHHHHHH
Q 041183 25 FTKFADFRRAFRFLFDTQNRDIITYNALISGLARFCQSGPALKLFDRLRYQGLRPDAFTFSSLVKACGSLQENEIVHGVC 104 (760)
Q Consensus 25 ~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~ 104 (760)
+.+.|.+..+...+..++.+++..|+.++..+.+.|++++|..+|++|.. ..|+..++..+..++.+.|+.++.....
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45567777788888888878899999999999999999999999999985 3566667777777766666666444444
Q ss_pred HHh-cCCCCchhhhHHHHHHHhcCChhhHHHHhhhcCCCC-------------------ceeHHHHHHHHHhcCChhHHH
Q 041183 105 LKL-GFSSRVYLVSGFIENYAKSGEIVSAEMCFRDCLDLD-------------------NVAYTAMVCGYVWNGEFDKSK 164 (760)
Q Consensus 105 ~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------------------~~~~~~li~~~~~~g~~~~A~ 164 (760)
.+. ..+++..+++.++.+|.+.|++++|.++|+.+...+ ..+|+.++.+|.+.|++++|+
T Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 220 (597)
T 2xpi_A 141 TKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK 220 (597)
T ss_dssp HHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHH
Confidence 333 235566666666666666666666666666432221 334455555555555555555
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHhccCccchhhHHHHHHhhccCCCcchhHHHHHHHHhHhcCCHHHHHHHhccCCCCCc
Q 041183 165 EVFVEMRSLGLELNEFSLTAVLGASFDVKEGEQIHGFGVKVGFLSGVCNHLNNAIMNLYVRCGQKLDAVKMFDEITEPDV 244 (760)
Q Consensus 165 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 244 (760)
++|++|.+.+ |+.. ..+..+...+...+..+.
T Consensus 221 ~~~~~~~~~~--p~~~---------------------------------~~~~~l~~~~~~~~~~~~------------- 252 (597)
T 2xpi_A 221 ECYKEALMVD--AKCY---------------------------------EAFDQLVSNHLLTADEEW------------- 252 (597)
T ss_dssp HHHHHHHHHC--TTCH---------------------------------HHHHHHHHTTCSCHHHHH-------------
T ss_pred HHHHHHHHhC--chhh---------------------------------HHHHHHHHhhcccchhHH-------------
Confidence 5555544432 1111 111111111111100000
Q ss_pred chHHHHHHhhcChhHHHHHHHHHhhCCccCCcchHHHHHHhhcCCCcchHHHHH-HHHHHHHcCCCCchhHhHHHHhhhc
Q 041183 245 VSWSERIAAACDGVEAFGLFKDLRFNDFQINEYTMINLLSSVGGERILRAGKQI-QAFCYKVGFMEVVSIGNALISMYGK 323 (760)
Q Consensus 245 ~~~~~ll~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~g~~~~~~~~~~li~~~~~ 323 (760)
.. +..+ +..+...+..+...+|+.++..|.+
T Consensus 253 -----------------~~-------------------------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (597)
T 2xpi_A 253 -----------------DL-------------------------------VLKLNYSTYSKEDAAFLRSLYMLKLNKTSH 284 (597)
T ss_dssp -----------------HH-------------------------------HHHSCTHHHHGGGHHHHHHHHHTTSCTTTT
T ss_pred -----------------HH-------------------------------HHhcCCcccccchHHHHHHHHHHHHHHHcC
Confidence 00 0000 1122222333344556677778888
Q ss_pred CCChHHHHHHHhcCCC--CCeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHH
Q 041183 324 CGQVNDARSIFDYLIF--KDSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHS 401 (760)
Q Consensus 324 ~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 401 (760)
.|++++|.++|+.+.. ++..+|+.++..|.+.|++++|.++|+++.+.+ +.+..++..++.++...|++++|..+++
T Consensus 285 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (597)
T 2xpi_A 285 EDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISN 363 (597)
T ss_dssp HHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8888888888888865 677788888888888888888888888887653 2245556666666666666666666666
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHH
Q 041183 402 HIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKKNAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTF 481 (760)
Q Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~ 481 (760)
.+.+.. +.+..+++.++.+|.+.|+++ +|.++|+++.+
T Consensus 364 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~-------------------------------~A~~~~~~~~~---------- 401 (597)
T 2xpi_A 364 DLVDRH-PEKAVTWLAVGIYYLCVNKIS-------------------------------EARRYFSKSST---------- 401 (597)
T ss_dssp HHHHHC-TTSHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHH----------
T ss_pred HHHhhC-cccHHHHHHHHHHHHHhccHH-------------------------------HHHHHHHHHHH----------
Confidence 655332 223333333333333333333 33333333332
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcC
Q 041183 482 SIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHG 558 (760)
Q Consensus 482 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~ 558 (760)
.. +.+..+|+.++.+|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|
T Consensus 402 -------------------------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 455 (597)
T 2xpi_A 402 -------------------------MD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG 455 (597)
T ss_dssp -------------------------HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHT
T ss_pred -------------------------hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC
Confidence 21 1234445555555555555555555555442 234556666777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhc---CCCCC--hhHHHHHHHHhhhcCChHH
Q 041183 559 CYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLH---GLIPQ--LEHYACIVDLLGRVGLLEG 633 (760)
Q Consensus 559 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~ 633 (760)
++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++
T Consensus 456 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 534 (597)
T 2xpi_A 456 NILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534 (597)
T ss_dssp CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHH
Confidence 7777777777776631 2256677777777777777777777777776621 45666 6778888888888888888
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 041183 634 AKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYAS 693 (760)
Q Consensus 634 A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 693 (760)
|.++++++. .+.+..+|..++.+|...|++++|.+.++++++++|+++.++..++.+|..
T Consensus 535 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 535 AIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 888888772 345788999999999999999999999999999999999999999987743
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=9.2e-26 Score=234.80 Aligned_cols=371 Identities=16% Similarity=0.086 Sum_probs=272.7
Q ss_pred HHHHHhcCCccHHHHHHHHHHHCCCCCC-HhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 041183 349 IAGYSENGFFNQALDMFCHMLEFSLIPN-GYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNA 427 (760)
Q Consensus 349 i~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 427 (760)
...+.+.|++++|.+.+..+.+. .|+ ...+..+...+...|++++|...++...+.. +.+...+..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34556677777777777776654 343 3444555566666777777777777666553 3456677777777777777
Q ss_pred hHHHHHHHhhcCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHH
Q 041183 428 LNESKRVLSEIDK--K-NAVHINALASVLVYASCHAEALELYRTIWGSCREVN-GSTFSIVLKACAAMTDLEQGKAIHCL 503 (760)
Q Consensus 428 ~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 503 (760)
+++|...|+++.+ | +...|..+..++...|++++|.+.|+++.+.. |+ ...+..+...+...|+++.|.+.+++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 7777777776643 2 34457777777788888888888887777653 33 34555666677777888888888888
Q ss_pred HHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CH
Q 041183 504 ALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DE 579 (760)
Q Consensus 504 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~ 579 (760)
+.+.. +.+..++..+...+...|++++|...|+++. +.+...|..+...+...|++++|+..|++..+ ..| +.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCH
Confidence 87764 3456777788888888888888888887763 33455777788888888888888888888877 456 35
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 041183 580 ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSAC 657 (760)
Q Consensus 580 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 657 (760)
.++..+..++...|++++|...|+.+.+ ..+.+...|..++.++.+.|++++|.+.++++. .+++..+|..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 6777778888888888888888888877 223346778888888888888888888888772 456777888888888
Q ss_pred HhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCC
Q 041183 658 TIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSH 737 (760)
Q Consensus 658 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (760)
...|++++|+..+++++++.|+++.++..++.+|.+.|++++|+..++++.+. +
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------------------------~ 369 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------------------------S 369 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--------------------------C
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------------------------C
Confidence 88888888888888888888888888888888888888888888888888754 5
Q ss_pred CChHHHHHHHHHHHHHHH
Q 041183 738 SQSKEIYKELIKLYEHMV 755 (760)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~ 755 (760)
|+..+.+..++.+|.+++
T Consensus 370 p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 370 PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTCHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHhHHHHHHHcc
Confidence 677778888887777655
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=3.3e-25 Score=230.63 Aligned_cols=370 Identities=10% Similarity=0.002 Sum_probs=304.6
Q ss_pred HhhhcCCChHHHHHHHhcC---CCCCeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHH
Q 041183 319 SMYGKCGQVNDARSIFDYL---IFKDSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQ 395 (760)
Q Consensus 319 ~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 395 (760)
..+.+.|++++|.+.++.+ .+.+...+..+...+...|++++|...++...+. .+.+..+|..+...+.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHH
Confidence 3455667777777777665 2224455666667777788888888888777764 23466778888888888888888
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 396 AMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDK--K-NAVHINALASVLVYASCHAEALELYRTIWGS 472 (760)
Q Consensus 396 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 472 (760)
|...|+.+.+.. +.+...+..+..++.+.|++++|.+.|+++.+ | +...+..+...+...|++++|.+.|+++...
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 888888887753 22456678888888888888888888887754 2 3445677778888889999999999988875
Q ss_pred CCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHH
Q 041183 473 CREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNA 549 (760)
Q Consensus 473 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ 549 (760)
. +.+..+|..+...+...|+++.|...++++.+.+ +.+...+..+...+...|++++|...|++.. +.+..++..
T Consensus 165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 242 (388)
T 1w3b_A 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHH
Confidence 3 2346788888999999999999999999999876 3567888999999999999999999998763 446778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhc
Q 041183 550 MMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRV 628 (760)
Q Consensus 550 l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 628 (760)
+..++.+.|++++|++.|+++.+ ..| +..++..+..++.+.|++++|...|+.+.+ ..+.+..++..++.++.+.
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHc
Confidence 99999999999999999999998 456 467888999999999999999999999998 3566788999999999999
Q ss_pred CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCC
Q 041183 629 GLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGM 696 (760)
Q Consensus 629 g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 696 (760)
|++++|.+.++++. .+.+..++..++..+.+.|++++|...+++++++.|+++.++..++.++...|+
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999883 455688999999999999999999999999999999999999999999988774
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=4.2e-26 Score=240.24 Aligned_cols=212 Identities=10% Similarity=0.063 Sum_probs=174.5
Q ss_pred cHHHHHHHHHHHCCCCCCHh-hHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhh
Q 041183 359 NQALDMFCHMLEFSLIPNGY-TMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSE 437 (760)
Q Consensus 359 ~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 437 (760)
..+..+.+.+.+.+..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|++|+.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 34455667777777665543 57888999999999999999999999999999999999999999887754321
Q ss_pred cCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHH
Q 041183 438 IDKKNAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVES 517 (760)
Q Consensus 438 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 517 (760)
...+..++|.++|++|...|+.||..||+.+|.+|++.|+++.|.+++++|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 1234567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC----CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 041183 518 AVIDMYCKCGTIEDAKRAFRKIC----RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHA 592 (760)
Q Consensus 518 ~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 592 (760)
.+|.+|++.|++++|.++|++|. .||..+|++|+.+|++.|+.++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999884 7888999999999999999999999999999999999999999998888763
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=1.8e-25 Score=235.46 Aligned_cols=183 Identities=13% Similarity=0.124 Sum_probs=173.0
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCC---------HHHHHHHHHHHHHcCCCCCchH
Q 041183 445 HINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTD---------LEQGKAIHCLALKARYDQDIFV 515 (760)
Q Consensus 445 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 515 (760)
.++.+|.+|++.|+.++|+++|++|.+.|+.||..||+.||.+|+..+. ++.|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4677788888888999999999999999999999999999999987654 7899999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC----CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 041183 516 ESAVIDMYCKCGTIEDAKRAFRKIC----RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCH 591 (760)
Q Consensus 516 ~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 591 (760)
|+++|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.|+.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999999994 689999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhc
Q 041183 592 AGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRV 628 (760)
Q Consensus 592 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 628 (760)
.|++++|.++|++|.+ .+..|+..||+.++..|...
T Consensus 188 ~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 188 TKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999998 89999999999999998763
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=3.6e-22 Score=212.38 Aligned_cols=372 Identities=12% Similarity=0.009 Sum_probs=261.5
Q ss_pred CeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 041183 341 DSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLIT 420 (760)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 420 (760)
+...+..+...+...|++++|+..|+++.+. .+.+..++..+..++...|++++|...++.+.+.+. .+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHH
Confidence 3445666677777777777777777777654 223456666667777777777777777777766542 24555666666
Q ss_pred HHHhcCChHHHHHHHhhcCCCCc------ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCH
Q 041183 421 TYGKCNALNESKRVLSEIDKKNA------VHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDL 494 (760)
Q Consensus 421 ~~~~~~~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 494 (760)
+|.+.|++++|...|+++.+.++ ..+..++..+.. ..+..+...+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCCH
Confidence 66666666666666666544322 222222222110 0112223345667777
Q ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041183 495 EQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMS 571 (760)
Q Consensus 495 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 571 (760)
+.|...++.+.+.. +.+..++..++.+|.+.|++++|...|+++. +.+..+|..++.+|...|++++|+..|+++.
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777777654 3466777788888888888888888887763 4566788888888888888888888888888
Q ss_pred HCCCCCCH-HHHHHH------------HHHHhccCcHHHHHHHHHHhhhhcCCCCC-----hhHHHHHHHHhhhcCChHH
Q 041183 572 KFGVKPDE-ITYLAV------------LTSCCHAGLVREARTYLSCMSDLHGLIPQ-----LEHYACIVDLLGRVGLLEG 633 (760)
Q Consensus 572 ~~g~~p~~-~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~ 633 (760)
+ ..|+. ..+..+ ...+.+.|++++|...|+.+.+ ..|+ ...+..++.++.+.|++++
T Consensus 239 ~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 239 K--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK---TEPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp H--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred H--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 7 45644 333333 6788999999999999999987 3344 4578889999999999999
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHH------------HHhcC----
Q 041183 634 AKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNL------------YASAG---- 695 (760)
Q Consensus 634 A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g---- 695 (760)
|...++++. .+.+..+|..++.+|...|++++|...+++++++.|+++.++..++.+ |...|
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 999999873 455789999999999999999999999999999999999999999944 55555
Q ss_pred -ChhHHHHHHHH-HHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHhhhc
Q 041183 696 -MWNDVGKLRKE-MKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYKELIKLYEHMVATAK 759 (760)
Q Consensus 696 -~~~~A~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (760)
+.+++++.+++ ..+....+.+.. ..++.+.+.+..+.+.|+.++|++|
T Consensus 394 ~~~~~~~~~y~~~~l~~~pd~~~~~----------------~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 394 AKKQEIIKAYRKLALQWHPDNFQNE----------------EEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp CCTTHHHHHHHHHHHHSCGGGCCSH----------------HHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCc----------------hHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 55677777776 333322211110 0012367789999999999999987
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.2e-21 Score=212.15 Aligned_cols=423 Identities=10% Similarity=-0.034 Sum_probs=301.6
Q ss_pred HHHHHHhhcCCCcchHHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcC---CCCCeeeHHHHHHHHHhc
Q 041183 279 MINLLSSVGGERILRAGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYL---IFKDSVSWNSMIAGYSEN 355 (760)
Q Consensus 279 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~ 355 (760)
+......+.+.|+++.|...|+.+.+.. |+...+..+..++.+.|++++|...++.+ .+.+...|..+..++...
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 3444555667788888888888887766 57777778888888888888888888766 223456777777888888
Q ss_pred CCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHH---HHHHHhcCChHHHH
Q 041183 356 GFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCL---ITTYGKCNALNESK 432 (760)
Q Consensus 356 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~A~ 432 (760)
|++++|...|+++...+ +++......++..+........+.+.+..+...+..|+......- ............+.
T Consensus 87 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred hhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 88888888888877754 234444444444333333233333322222111111111100000 00000111111112
Q ss_pred HHHhhcCC---------C-CcccHHHHHHHHHh---cCChhHHHHHHHHHHh-----CCCCC--------ChhHHHHHHH
Q 041183 433 RVLSEIDK---------K-NAVHINALASVLVY---ASCHAEALELYRTIWG-----SCREV--------NGSTFSIVLK 486 (760)
Q Consensus 433 ~~~~~~~~---------~-~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~-----~~~~~--------~~~~~~~ll~ 486 (760)
..+..... + +...+......+.. .|++++|+..|+++.. ....| +..++..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 22222211 1 13334444444554 8999999999999887 32122 2346777888
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHH
Q 041183 487 ACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEV 563 (760)
Q Consensus 487 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a 563 (760)
.+...|+++.|...++.+.+.... ...+..+...+...|++++|...++.+. +.+...|..+...+...|++++|
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 899999999999999999987643 8888999999999999999999998874 34667899999999999999999
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC
Q 041183 564 SNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP 642 (760)
Q Consensus 564 ~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 642 (760)
...|+++.+. .| +...+..+...+...|++++|...++.+.+ ..+.+...+..++..+.+.|++++|...++++.
T Consensus 324 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 324 GKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999984 45 457888888999999999999999999987 234467889999999999999999999998872
Q ss_pred ----CCCC----HHHHHHHHHHHHh---cCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 643 ----IPPD----AHIWQSLLSACTI---YGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 643 ----~~p~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
..++ ...|..+...+.. .|++++|...++++++..|+++.++..++.+|.+.|++++|...+++..+.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 2232 4488999999999 999999999999999999999999999999999999999999999998876
No 9
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.89 E-value=2.7e-17 Score=182.69 Aligned_cols=615 Identities=13% Similarity=0.120 Sum_probs=287.2
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCcccHHHHHHHhcCCCchhHHHHHHHHhcCCCCchhhhHHHHHHHhcC
Q 041183 48 TYNALISGLARFCQSGPALKLFDRLRYQGLRPDAFTFSSLVKACGSLQENEIVHGVCLKLGFSSRVYLVSGFIENYAKSG 127 (760)
Q Consensus 48 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 127 (760)
..+.++..+...+..+++..++.+..+.+-+-+...-+-|+.. ......++-+.+...++- +.+-+..+...|-+.|
T Consensus 545 d~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle~--Nl~~~pqvadail~~~~f-thyd~~~IA~LCE~aG 621 (1630)
T 1xi4_A 545 DITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEM--NLMHAPQVADAILGNQMF-THYDRAHIAQLCEKAG 621 (1630)
T ss_pred CHHHHHHHHHhcCcHHHHHHHHHHHHhCCChhhhhHhHHHHHH--hhccchhHHHHHHhcCcc-ccccHHHHHHHHHHcC
Confidence 3444455555555555555555444443322222222222221 001111444444444444 5566677888889999
Q ss_pred ChhhHHHHhhhcCC-------CCceeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh-------------hHHHHHH
Q 041183 128 EIVSAEMCFRDCLD-------LDNVAYTAMVCGYVWNGEFDKSKEVFVEMRSLGLELNEF-------------SLTAVLG 187 (760)
Q Consensus 128 ~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------------t~~~ll~ 187 (760)
-++.|++.+..+.+ .....-.-++..+.+ =..+.+++++++|...+++-+.. +-..++.
T Consensus 622 l~qrale~y~d~~dikR~~~~~~~~~~~~l~~~fg~-l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~ 700 (1630)
T 1xi4_A 622 LLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGS-LSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIE 700 (1630)
T ss_pred cHHHHHHhcCCHHHHHHHhhccCcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHH
Confidence 99999999876533 222333445555555 45689999999998765443321 1222333
Q ss_pred hccCccchhhHHHHHHhhccCCCcchhHHHHHHHHhHhcCCHHHHHHHhccCCC---------------CCcc-------
Q 041183 188 ASFDVKEGEQIHGFGVKVGFLSGVCNHLNNAIMNLYVRCGQKLDAVKMFDEITE---------------PDVV------- 245 (760)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------~~~~------- 245 (760)
.+...+..+.+.-.+.. -.+...++.+....|.+.++.|.+.+..++.++-.- +|..
T Consensus 701 ~fe~~~~~egl~y~l~s-iv~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCd 779 (1630)
T 1xi4_A 701 LFESFKSFEGLFYFLGS-IVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD 779 (1630)
T ss_pred HHHHhcchhhHHHHHHh-hccccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeecc
Confidence 33333333333333222 223367899999999999999999999988876431 1110
Q ss_pred --hH-HHHHHhhc--ChhHHHHHHHHHhhC-----------CccCCcchHHHHHHhh-------------cCCCcchHHH
Q 041183 246 --SW-SERIAAAC--DGVEAFGLFKDLRFN-----------DFQINEYTMINLLSSV-------------GGERILRAGK 296 (760)
Q Consensus 246 --~~-~~ll~~~~--~~~~a~~~~~~m~~~-----------~~~~~~~~~~~ll~~~-------------~~~~~~~~a~ 296 (760)
.+ ..|+.-+. +..+.++.|-.-... .+.-++.....+|... -+.+++....
T Consensus 780 r~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~ 859 (1630)
T 1xi4_A 780 RFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLL 859 (1630)
T ss_pred ccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 00 00111111 111112222110000 0112223333333333 2222232233
Q ss_pred HHHHHHHHHcCCCCchhHhHHHHhhhcCCC-hHHH------------HHHHhcCCCCCee--------------------
Q 041183 297 QIQAFCYKVGFMEVVSIGNALISMYGKCGQ-VNDA------------RSIFDYLIFKDSV-------------------- 343 (760)
Q Consensus 297 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A------------~~~~~~~~~~~~~-------------------- 343 (760)
..++.-+..| ..++.++|+|...|..+++ .+.- -+..++ +|+.
T Consensus 860 p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~---rDp~la~iay~~g~~d~eli~vt~ 935 (1630)
T 1xi4_A 860 PWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEK---RDPHLACVAYERGQCDLELINVCN 935 (1630)
T ss_pred HHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHh---cCcchHHHHhcccCCcHHHHHHHh
Confidence 3333333333 3577788888888876543 2221 111111 1111
Q ss_pred ---eHHHHHHHHHhcCCccHHH-----------HHHHHHHHCCC--CCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhC
Q 041183 344 ---SWNSMIAGYSENGFFNQAL-----------DMFCHMLEFSL--IPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSG 407 (760)
Q Consensus 344 ---~~~~li~~~~~~g~~~~a~-----------~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 407 (760)
.|....+-+.+..+++-=- ++.+.-....+ .-++.-.....++|...|.+.++.++++.+.-.+
T Consensus 936 ~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~ 1015 (1630)
T 1xi4_A 936 ENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDN 1015 (1630)
T ss_pred cchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 1222222222222211100 11111111110 1223333445666667777777777777666321
Q ss_pred --CCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 041183 408 --FLLDDSMISCLITTYGKCNALNESKRVLSEIDKKNAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVL 485 (760)
Q Consensus 408 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll 485 (760)
+.-+...-+.++.+..+. +.....+..+++..-+ ...+...+...|.+++|..+|++.. -.....+.++
T Consensus 1016 s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi 1086 (1630)
T 1xi4_A 1016 SVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI 1086 (1630)
T ss_pred CcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH
Confidence 112233344444444433 3333444443333211 2334444555555555555555431 0111111111
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHH
Q 041183 486 KACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSN 565 (760)
Q Consensus 486 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 565 (760)
. ..+++++|.++.++. -++.+|..+..++...|++++|.+.|.+. .|...|..++.++.+.|++++|++
T Consensus 1087 e---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1087 E---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred H---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHH
Confidence 1 334444444444432 12334444444444444554444444332 333444444444444444444444
Q ss_pred HHHHHHHCCC--------------------------CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHH
Q 041183 566 LFNKMSKFGV--------------------------KPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYA 619 (760)
Q Consensus 566 ~~~~m~~~g~--------------------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 619 (760)
.|....+..- .|+...+..+...|...|++++|..+|..+. .|.
T Consensus 1156 yL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~----------ny~ 1225 (1630)
T 1xi4_A 1156 YLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFG 1225 (1630)
T ss_pred HHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh----------HHH
Confidence 4444333210 2233334444455555555555555555431 355
Q ss_pred HHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhH
Q 041183 620 CIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWND 699 (760)
Q Consensus 620 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 699 (760)
.++.+|.+.|++++|.+.+++.. +..+|.....+|...|++..|...... +. .++..+..++..|.+.|.+++
T Consensus 1226 rLA~tLvkLge~q~AIEaarKA~---n~~aWkev~~acve~~Ef~LA~~cgl~-Ii---v~~deLeeli~yYe~~G~feE 1298 (1630)
T 1xi4_A 1226 RLASTLVHLGEYQAAVDGARKAN---STRTWKEVCFACVDGKEFRLAQMCGLH-IV---VHADELEELINYYQDRGYFEE 1298 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHHHhC---CHHHHHHHHHHHhhhhHHHHHHHHHHh-hh---cCHHHHHHHHHHHHHcCCHHH
Confidence 55555555555555555555542 345555555555555555555554442 11 255677788888999999999
Q ss_pred HHHHHHHHH
Q 041183 700 VGKLRKEMK 708 (760)
Q Consensus 700 A~~~~~~~~ 708 (760)
|+.+++...
T Consensus 1299 AI~LlE~aL 1307 (1630)
T 1xi4_A 1299 LITMLEAAL 1307 (1630)
T ss_pred HHHHHHHHh
Confidence 999997554
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.9e-21 Score=209.31 Aligned_cols=440 Identities=11% Similarity=-0.004 Sum_probs=304.1
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHhccCCCCCcchHHHHHHhhcChhHHHHHHHHHhhCCccCCcchHHHHHHhhcCCCcc
Q 041183 213 NHLNNAIMNLYVRCGQKLDAVKMFDEITEPDVVSWSERIAAACDGVEAFGLFKDLRFNDFQINEYTMINLLSSVGGERIL 292 (760)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 292 (760)
...+......+.+.|++++|...|+++. .. .|+...+..+..++...|++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al----------------------------~~--~p~~~~~~~la~~~~~~g~~ 55 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWAL----------------------------EL--KEDPVFYSNLSACYVSVGDL 55 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHH----------------------------HH--CCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHH----------------------------hc--CccHHHHHhHHHHHHHHhhH
Confidence 3445666677788888888888777643 21 25666777777888888888
Q ss_pred hHHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcCC---CCCeeeHHHHHHHHHhcCCccHHHHHHHHHH
Q 041183 293 RAGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYLI---FKDSVSWNSMIAGYSENGFFNQALDMFCHML 369 (760)
Q Consensus 293 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 369 (760)
+.|...++.+++.. +.+..++..+..++.+.|++++|...|+.+. .++......++..+........+.+.+..+.
T Consensus 56 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 134 (514)
T 2gw1_A 56 KKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDID 134 (514)
T ss_dssp HHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888765 3455678888888889999999998888772 2233444444444444333333333332222
Q ss_pred HCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCC---------CCChhHHHHHHHHHHh---cCChHHHHHHHhh
Q 041183 370 EFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGF---------LLDDSMISCLITTYGK---CNALNESKRVLSE 437 (760)
Q Consensus 370 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~ 437 (760)
..+..|+...+..-...............+...+..... +.+...+......+.. .|++++|...|++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 214 (514)
T 2gw1_A 135 TATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTK 214 (514)
T ss_dssp ----------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHH
T ss_pred HHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHH
Confidence 221112111111100000000000000111111110000 1113333334444443 6777777777776
Q ss_pred cCC-----C------------CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHH
Q 041183 438 IDK-----K------------NAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAI 500 (760)
Q Consensus 438 ~~~-----~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 500 (760)
+.+ . +...+..+...+...|++++|...|+++...... ...+..+...+...|+++.|...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~ 292 (514)
T 2gw1_A 215 AARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNY 292 (514)
T ss_dssp HHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGH
T ss_pred HHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHH
Confidence 544 1 2346677788889999999999999998876544 77888888999999999999999
Q ss_pred HHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 041183 501 HCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP 577 (760)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 577 (760)
++.+.+.. +.+...+..+...+...|++++|...|+++. +.+...+..+...+...|++++|...++++.+. .|
T Consensus 293 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~ 369 (514)
T 2gw1_A 293 FDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FP 369 (514)
T ss_dssp HHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--ST
T ss_pred HHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cc
Confidence 99998865 3567888999999999999999999998763 446678899999999999999999999999884 45
Q ss_pred -CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHhhh---cCChHHHHHHHHhCC--CCCCH
Q 041183 578 -DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQ----LEHYACIVDLLGR---VGLLEGAKMTIDQMP--IPPDA 647 (760)
Q Consensus 578 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~--~~p~~ 647 (760)
+...+..+...+...|++++|...++.+.+.....++ ...+..++.++.. .|++++|.+.++++. .+.+.
T Consensus 370 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 449 (514)
T 2gw1_A 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSE 449 (514)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccH
Confidence 4577888889999999999999999998873222222 3488999999999 999999999999872 45568
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHH
Q 041183 648 HIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLS 688 (760)
Q Consensus 648 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 688 (760)
.++..+...+...|++++|...+++++++.|+++..+..+.
T Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 450 QAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 88999999999999999999999999999998888777664
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=2.3e-20 Score=198.32 Aligned_cols=324 Identities=12% Similarity=0.032 Sum_probs=227.3
Q ss_pred CHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHH
Q 041183 376 NGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDK---KNAVHINALASV 452 (760)
Q Consensus 376 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~ 452 (760)
+...+..+...+.+.|++++|..+|+.+.+.. +.+...+..+..++...|++++|...|+++.+ .+...+..+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 34445555555556666666666666555442 22444555555555555555555555554432 123344444444
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCC
Q 041183 453 LVYASCHAEALELYRTIWGSCREVNG----STFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGT 528 (760)
Q Consensus 453 ~~~~~~~~~A~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 528 (760)
|...|++++|...|+++.+.. |+. ..+..+...+.. ..+..+...+...|+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCC
Confidence 444555555555554444321 211 122222211100 012233556889999
Q ss_pred HHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHH
Q 041183 529 IEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSC 604 (760)
Q Consensus 529 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 604 (760)
+++|...|+.+. +.+...+..++.+|.+.|++++|++.|+++.+. .| +..++..+...+...|++++|...|+.
T Consensus 159 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KNDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999874 457778999999999999999999999999884 44 578899999999999999999999999
Q ss_pred hhhhcCCCC-ChhHHHHH------------HHHhhhcCChHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCChhH
Q 041183 605 MSDLHGLIP-QLEHYACI------------VDLLGRVGLLEGAKMTIDQMP-IPPD-----AHIWQSLLSACTIYGNIDL 665 (760)
Q Consensus 605 ~~~~~~~~~-~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l~~~~~~~~~~~~ 665 (760)
+.+ ..| +...+..+ +..+.+.|++++|.+.++++. ..|+ ...|..++..+.+.|++++
T Consensus 237 ~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 237 CLK---LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHH---hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 987 344 34445444 889999999999999999882 3344 4478888999999999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHH
Q 041183 666 GLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYK 745 (760)
Q Consensus 666 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (760)
|+..+++++++.|+++.++..++.+|...|++++|...++++.+. +|+..+++.
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------------------------~p~~~~~~~ 367 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--------------------------NENDQQIRE 367 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------------------------SSSCHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------------------------CcchHHHHH
Confidence 999999999999999999999999999999999999999999865 555666666
Q ss_pred HHHHHHHHHHh
Q 041183 746 ELIKLYEHMVA 756 (760)
Q Consensus 746 ~~~~~~~~~~~ 756 (760)
.+.+++...+.
T Consensus 368 ~l~~~~~~~~~ 378 (450)
T 2y4t_A 368 GLEKAQRLLKQ 378 (450)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 66666555544
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=2e-20 Score=203.80 Aligned_cols=423 Identities=10% Similarity=0.019 Sum_probs=307.1
Q ss_pred chHHHHHHhhcCCCcchHHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcC---CCCCeeeHHHHHHHHH
Q 041183 277 YTMINLLSSVGGERILRAGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYL---IFKDSVSWNSMIAGYS 353 (760)
Q Consensus 277 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~ 353 (760)
..+..+...+.+.|+++.|...++.+++.. +.++..+..+..++.+.|++++|.+.|+++ .+.+...+..+..++.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 345566667778889999999998888765 346678888888888999999999998887 3336677888888899
Q ss_pred hcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChHHH
Q 041183 354 ENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSG--FLLDDSMISCLITTYGKCNALNES 431 (760)
Q Consensus 354 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 431 (760)
..|++++|...|+.+. ..|+... ..+..+...+....+...++.+.... ..+........+..+....+.+.+
T Consensus 105 ~~g~~~~A~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLS---LNGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHHHHh---cCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 9999999999886432 2232221 12333344455567777777775421 111111123344455566777777
Q ss_pred HHHHhhcCCCCcc---cHHHHHHHHHh--------cCChhHHHHHHHHHHhCCCCCC------hhHHHHHHHHHhccCCH
Q 041183 432 KRVLSEIDKKNAV---HINALASVLVY--------ASCHAEALELYRTIWGSCREVN------GSTFSIVLKACAAMTDL 494 (760)
Q Consensus 432 ~~~~~~~~~~~~~---~~~~l~~~~~~--------~~~~~~A~~~~~~m~~~~~~~~------~~~~~~ll~~~~~~~~~ 494 (760)
...+......+.. ....+...+.. .|++++|...|+++.+...... ..++..+...+...|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 6666665554433 22333322222 2478889999999887543211 22466666778888999
Q ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041183 495 EQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMS 571 (760)
Q Consensus 495 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 571 (760)
+.|...++.+.+.. |+...+..+...+...|++++|...|+++. +.+..+|..+...+...|++++|...|+++.
T Consensus 260 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 260 LDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999998865 457888889999999999999999998774 4566789999999999999999999999998
Q ss_pred HCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--------
Q 041183 572 KFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP-------- 642 (760)
Q Consensus 572 ~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------- 642 (760)
+ ..| +...+..+...+...|++++|...++.+.+ ..+.+...+..++..+...|++++|.+.++++.
T Consensus 338 ~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 338 S--LNPENVYPYIQLACLLYKQGKFTESEAFFNETKL--KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp H--HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred H--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 8 445 457788888899999999999999999988 234457788899999999999999999998861
Q ss_pred CCCCHHHHHHHHHHHHhc----------CChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 041183 643 IPPDAHIWQSLLSACTIY----------GNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKF 711 (760)
Q Consensus 643 ~~p~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (760)
.......+..+...+... |++++|+..++++++..|+++.++..++.+|.+.|++++|...+++..+..
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 112233355556677777 999999999999999999999999999999999999999999999988753
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=1.6e-16 Score=176.62 Aligned_cols=678 Identities=12% Similarity=0.079 Sum_probs=355.8
Q ss_pred chhhhhHHHHhhccCChhHHHHhhhcCCC--C---Cc-chHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCc-------
Q 041183 15 PILSTTLISHFTKFADFRRAFRFLFDTQN--R---DI-ITYNALISGLARFCQSGPALKLFDRLRYQGLRPDA------- 81 (760)
Q Consensus 15 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~---~~-~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~------- 81 (760)
..=+..+...|-+.|-+++|++.+..+.. + ++ ..=-.-+..|...=+.+.+++++++|...+++-+.
T Consensus 607 hyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~~~fg~l~~~~s~~~l~~~l~~n~~qnlq~vvqva 686 (1630)
T 1xi4_A 607 HYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGSLSVEDSLECLRAMLSANIRQNLQICVQVA 686 (1630)
T ss_pred cccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhHhhhhhhhhhHH
Confidence 33445667788899999999999986641 1 01 00111334444446778999999999875543221
Q ss_pred ------ccHHHHHHHhcCCCchhHHHHHHHH-hcCCCCchhhhHHHHHHHhcCChhhHHHHhhhcCC-------------
Q 041183 82 ------FTFSSLVKACGSLQENEIVHGVCLK-LGFSSRVYLVSGFIENYAKSGEIVSAEMCFRDCLD------------- 141 (760)
Q Consensus 82 ------~~~~~ll~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------- 141 (760)
..-..++..+-+.+..+.++-.+-. .+...|+.++...|++.++.|++.+.+++-++-.-
T Consensus 687 ~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~ 766 (1630)
T 1xi4_A 687 SKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEA 766 (1630)
T ss_pred HHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhccccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhC
Confidence 1223333333333333322222211 14567899999999999999999999888755310
Q ss_pred --CCc---------e-------------eHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----------CChhhHHHHH
Q 041183 142 --LDN---------V-------------AYTAMVCGYVWNGEFDKSKEVFVEMRSLGLE-----------LNEFSLTAVL 186 (760)
Q Consensus 142 --~~~---------~-------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----------p~~~t~~~ll 186 (760)
+|. . .....|..|...-++.++-.+.-.+...++. .+......++
T Consensus 767 kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv 846 (1630)
T 1xi4_A 767 KLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELV 846 (1630)
T ss_pred CCCCCCCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHH
Confidence 111 1 1122344444443333332222222211110 1222244555
Q ss_pred HhccCccchhhHHHHHHhhccCCCcchhHHHHHHHHhHhcC-CHHHHH------------HHhccCCCCCcc-hHHHHHH
Q 041183 187 GASFDVKEGEQIHGFGVKVGFLSGVCNHLNNAIMNLYVRCG-QKLDAV------------KMFDEITEPDVV-SWSERIA 252 (760)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~------------~~~~~~~~~~~~-~~~~ll~ 252 (760)
..+.....-+-+..++..+-..+..++.++|+|...|...+ +++.-+ +..++ +|+. .|-+.-+
T Consensus 847 ~~~ekrnrLkll~p~LE~~~~~g~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~---rDp~la~iay~~ 923 (1630)
T 1xi4_A 847 AEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEK---RDPHLACVAYER 923 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHh---cCcchHHHHhcc
Confidence 55554444444555555554444778888899988888654 344422 11111 1111 0111111
Q ss_pred hhcChh-----HHHHHHHHHhhC-CccCCcchHHH--------------------------------HHHhhcCCCcchH
Q 041183 253 AACDGV-----EAFGLFKDLRFN-DFQINEYTMIN--------------------------------LLSSVGGERILRA 294 (760)
Q Consensus 253 ~~~~~~-----~a~~~~~~m~~~-~~~~~~~~~~~--------------------------------ll~~~~~~~~~~~ 294 (760)
+.|+.+ .--.+|+...+- =-+-|...|.. ..+++...|...+
T Consensus 924 g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~E 1003 (1630)
T 1xi4_A 924 GQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNE 1003 (1630)
T ss_pred cCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHH
Confidence 111000 000001000000 00123333333 3444444555555
Q ss_pred HHHHHHHHHHHc--CCCCchhHhHHHHhhhcCCChHHHHHHHhcCCCCCeeeHHHHHHHHHhcCCccHHHHHHHHHHHCC
Q 041183 295 GKQIQAFCYKVG--FMEVVSIGNALISMYGKCGQVNDARSIFDYLIFKDSVSWNSMIAGYSENGFFNQALDMFCHMLEFS 372 (760)
Q Consensus 295 a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 372 (760)
+.++++.+.-.+ +..+....+.++.+..+. +..+..+..+....-+ ...+...+...|.+++|..+|++..
T Consensus 1004 aieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa~--- 1076 (1630)
T 1xi4_A 1004 LIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKFD--- 1076 (1630)
T ss_pred HHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHcC---
Confidence 555555444211 011222333333333333 2233333333322111 2334455555666666666666531
Q ss_pred CCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHH
Q 041183 373 LIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKKNAVHINALASV 452 (760)
Q Consensus 373 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 452 (760)
-.....+.++. ..+++++|.++.+.. -++.+|..+..++...|++++|.+.|.+. .++..|..++.+
T Consensus 1077 --~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~ 1143 (1630)
T 1xi4_A 1077 --VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQA 1143 (1630)
T ss_pred --CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHH
Confidence 01111122221 445555555555533 24556666666666666666666666543 455556666666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHH
Q 041183 453 LVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDA 532 (760)
Q Consensus 453 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 532 (760)
+.+.|++++|++.|...++.. +++...+.+..+|++.++++....+. + .++...+..+.+.|...|++++|
T Consensus 1144 ~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA 1214 (1630)
T 1xi4_A 1144 ANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAA 1214 (1630)
T ss_pred HHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHH
Confidence 666666666666666655543 22222223666666666665433332 1 23444555566666666666666
Q ss_pred HHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCC
Q 041183 533 KRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLI 612 (760)
Q Consensus 533 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 612 (760)
..+|... ..|..++..|.+.|++++|.+.+++. .+..+|..+-.+|...|++..|...... +.
T Consensus 1215 ~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Ii 1277 (1630)
T 1xi4_A 1215 KLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IV 1277 (1630)
T ss_pred HHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hh
Confidence 6666664 36666667777777777777666655 2345666666666666666666654432 23
Q ss_pred CChhHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHh--cCChhHHHHHHHHHhccCC-----CCchh
Q 041183 613 PQLEHYACIVDLLGRVGLLEGAKMTIDQM-PIP-PDAHIWQSLLSACTI--YGNIDLGLLAGSKLLELQP-----DNEST 683 (760)
Q Consensus 613 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~p-----~~~~~ 683 (760)
.++..+..++..|.+.|.+++|+.+++.. ... .....|.-|...+.+ -++..++.+.|..-..+.| ++...
T Consensus 1278 v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~l 1357 (1630)
T 1xi4_A 1278 VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHL 1357 (1630)
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHH
Confidence 35566778888888888888888888766 323 334456555555544 3566677777777666666 67788
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHHHHHHHHHHHH
Q 041183 684 YVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYKELIKLYEHMV 755 (760)
Q Consensus 684 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 (760)
|..+...|.+.|+|+.|....-+-... .|- |..+...-.++.-.|+|..-...|.+..
T Consensus 1358 W~elv~LY~~~~e~dnA~~tm~~h~~~--------a~~------~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1358 WAELVFLYDKYEEYDNAIITMMNHPTD--------AWK------EGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhccHh--------hhh------hHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 888888899999999888532211000 000 1111112347778889988888887654
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=7.3e-19 Score=180.45 Aligned_cols=329 Identities=12% Similarity=0.020 Sum_probs=225.9
Q ss_pred HhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHH
Q 041183 377 GYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDK---KNAVHINALASVL 453 (760)
Q Consensus 377 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 453 (760)
...+..+...+...|++++|...++.+.+... .+...+..+...+...|++++|...++++.+ .+...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 34555666666777777777777777766532 2455666666666666777766666666543 2344555566666
Q ss_pred HhcCChhHHHHHHHHHHhCCCC--CChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHH
Q 041183 454 VYASCHAEALELYRTIWGSCRE--VNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIED 531 (760)
Q Consensus 454 ~~~~~~~~A~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 531 (760)
...|++++|...|++..+.... .+...+..+.... . ...+..+...+...|++++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCHHH
Confidence 6666666666666666553210 0111121111000 0 0011223566777777777
Q ss_pred HHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 041183 532 AKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSD 607 (760)
Q Consensus 532 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (760)
|...++++. +.+...+..+...+...|++++|...++++.+. .| +...+..+...+...|++++|...++.+.+
T Consensus 139 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 139 AITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777777653 345566777777788888888888888887773 44 456777777777888888888888888776
Q ss_pred hcCCCCChhHHH------------HHHHHhhhcCChHHHHHHHHhCC-CCC-CH----HHHHHHHHHHHhcCChhHHHHH
Q 041183 608 LHGLIPQLEHYA------------CIVDLLGRVGLLEGAKMTIDQMP-IPP-DA----HIWQSLLSACTIYGNIDLGLLA 669 (760)
Q Consensus 608 ~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~----~~~~~l~~~~~~~~~~~~A~~~ 669 (760)
. .+.+...+. .++..+.+.|++++|.+.++++. ..| +. ..+..+...+...|++++|+..
T Consensus 217 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 217 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 2 222223222 33667888999999999998872 223 33 2355677889999999999999
Q ss_pred HHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHHHHHH
Q 041183 670 GSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYKELIK 749 (760)
Q Consensus 670 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (760)
++++++..|+++.++..++.+|...|++++|...+++..+. +|+..++...+.+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------------------------~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------------------------NENDQQIREGLEK 348 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------------------------CTTCHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------------CCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999865 7888899999999
Q ss_pred HHHHHHhhhc
Q 041183 750 LYEHMVATAK 759 (760)
Q Consensus 750 ~~~~~~~~~~ 759 (760)
++..++..+|
T Consensus 349 ~~~~~~~~~~ 358 (359)
T 3ieg_A 349 AQRLLKQSQK 358 (359)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcc
Confidence 9999988765
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=2.4e-19 Score=195.24 Aligned_cols=408 Identities=14% Similarity=0.062 Sum_probs=273.2
Q ss_pred hhHhHHHHhhhcCCChHHHHHHHhcC---CCCCeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhc
Q 041183 312 SIGNALISMYGKCGQVNDARSIFDYL---IFKDSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVS 388 (760)
Q Consensus 312 ~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 388 (760)
..+..+...+.+.|++++|...|+++ .+.+...|..+..++...|++++|++.++++.+.+ +.+..++..+..++.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 34555555666666666666666655 22345556666666666666666666666665542 223445555666666
Q ss_pred CcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC------CcccHHHHHHHHHhcCChhHH
Q 041183 389 NSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKK------NAVHINALASVLVYASCHAEA 462 (760)
Q Consensus 389 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A 462 (760)
..|++++|...++.+ . ..|+ .....+..+...+....|...++.+... ........+..+....+.+.+
T Consensus 105 ~~g~~~~A~~~~~~~-~--~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVL-S--LNGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHHHH-h--cCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 666666666666422 1 1111 1112233333444445555555555432 112233344444445555444
Q ss_pred HHHHHHHHhCCCCCChh-HHHHHHHHHhc--------cCCHHHHHHHHHHHHHcCCCCC-------chHHHHHHHHHHhc
Q 041183 463 LELYRTIWGSCREVNGS-TFSIVLKACAA--------MTDLEQGKAIHCLALKARYDQD-------IFVESAVIDMYCKC 526 (760)
Q Consensus 463 ~~~~~~m~~~~~~~~~~-~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~ 526 (760)
...+..... ..+... ....+...+.. .|+++.|..+++.+.+... .+ ..++..+...+...
T Consensus 180 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 180 VSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT-VDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC-CcchhhHHHHHHHHHHHHHHHhc
Confidence 443332211 111111 12222222222 2478889999998887652 22 23466777888899
Q ss_pred CCHHHHHHHHHhcC--CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHH
Q 041183 527 GTIEDAKRAFRKIC--RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLS 603 (760)
Q Consensus 527 ~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 603 (760)
|++++|...|+.+. .|+...|..+...+...|++++|...|+++.+. .| +...+..+...+...|++++|...++
T Consensus 257 ~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999874 556778889999999999999999999999884 45 56788888899999999999999999
Q ss_pred HhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 041183 604 CMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNE 681 (760)
Q Consensus 604 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 681 (760)
.+.+. .+.+...+..++.++...|++++|.+.++++. .+.+..++..+...+...|++++|...++++++..|++.
T Consensus 335 ~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 335 KAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 99882 33456889999999999999999999999882 455677899999999999999999999999999877655
Q ss_pred hh------HHHHHHHHHhc----------CChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHH
Q 041183 682 ST------YVLLSNLYASA----------GMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYK 745 (760)
Q Consensus 682 ~~------~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (760)
.. +..++.++... |++++|...+++..+. +|+..+.+.
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------------------------~p~~~~~~~ 466 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--------------------------DPRSEQAKI 466 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--------------------------CTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--------------------------CCCCHHHHH
Confidence 44 45667888888 9999999999998865 677778899
Q ss_pred HHHHHHHHHHhhh
Q 041183 746 ELIKLYEHMVATA 758 (760)
Q Consensus 746 ~~~~~~~~~~~~~ 758 (760)
.++.+|.++|+.+
T Consensus 467 ~l~~~~~~~g~~~ 479 (537)
T 3fp2_A 467 GLAQLKLQMEKID 479 (537)
T ss_dssp HHHHHHHHTTCHH
T ss_pred HHHHHHHHhccHH
Confidence 9999999888765
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=1.4e-17 Score=170.74 Aligned_cols=322 Identities=12% Similarity=-0.008 Sum_probs=248.7
Q ss_pred eeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 041183 342 SVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITT 421 (760)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 421 (760)
+..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+... .+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHH
Confidence 4567788889999999999999999998853 33577888899999999999999999999998753 366888999999
Q ss_pred HHhcCChHHHHHHHhhcCCCCc---c---cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHH
Q 041183 422 YGKCNALNESKRVLSEIDKKNA---V---HINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLE 495 (760)
Q Consensus 422 ~~~~~~~~~A~~~~~~~~~~~~---~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 495 (760)
+...|++++|...|++..+.++ . .+..+...+ . ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCHH
Confidence 9999999999999999876544 2 222221100 0 112333445666777777
Q ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 041183 496 QGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSK 572 (760)
Q Consensus 496 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 572 (760)
.|...++.+.+.. +.+...+..+...+...|++++|...++.+. +.+...|..+...+...|++++|...|++..+
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777777654 3456777778888888888888888887763 34566788888888888888888888888887
Q ss_pred CCCCCCH-HHHH------------HHHHHHhccCcHHHHHHHHHHhhhhcCCCCC-h----hHHHHHHHHhhhcCChHHH
Q 041183 573 FGVKPDE-ITYL------------AVLTSCCHAGLVREARTYLSCMSDLHGLIPQ-L----EHYACIVDLLGRVGLLEGA 634 (760)
Q Consensus 573 ~g~~p~~-~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~g~~~~A 634 (760)
..|+. ..+. .+...+.+.|++++|...++.+.+. .|+ . ..+..++.++...|++++|
T Consensus 217 --~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 217 --LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp --HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 34543 2222 2355688899999999999999872 233 2 3355688899999999999
Q ss_pred HHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhc
Q 041183 635 KMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASA 694 (760)
Q Consensus 635 ~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 694 (760)
.+.++++- .+.++.+|..+...+...|++++|...++++++++|+++.++..+..++...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 99999882 4557889999999999999999999999999999999999998888776553
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.6e-17 Score=168.29 Aligned_cols=279 Identities=11% Similarity=0.012 Sum_probs=137.9
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 041183 409 LLDDSMISCLITTYGKCNALNESKRVLSEIDK---KNAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVL 485 (760)
Q Consensus 409 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll 485 (760)
..+...+..+...+...|++++|.++|+++.+ .+...+..++.++...|++++|...++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 33445555556666666666666666655542 133344445555555555666655555555432 12334444555
Q ss_pred HHHhccC-CHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHH
Q 041183 486 KACAAMT-DLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYH 561 (760)
Q Consensus 486 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 561 (760)
..+...| +++.|...++++.+.. +.+...+..+...+...|++++|...|+++. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 5555555 5555555555555443 2234445555555555555555555555442 223334444555555555555
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcC-------CCCChhHHHHHHHHhhhcCChHH
Q 041183 562 EVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHG-------LIPQLEHYACIVDLLGRVGLLEG 633 (760)
Q Consensus 562 ~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~ 633 (760)
+|...++++.+ ..| +...+..+...+...|++++|...++.+.+... .+.....+..++.++...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 55555555554 223 234444455555555555555555555544110 02223444455555555555555
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHH
Q 041183 634 AKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLY 691 (760)
Q Consensus 634 A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 691 (760)
|.+.++++. .+.+...|..+...+...|++++|...+++++++.|+++.++..++.++
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 555554441 2233444445555555555555555555555555555555555555544
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=1.4e-18 Score=173.46 Aligned_cols=367 Identities=13% Similarity=0.117 Sum_probs=173.1
Q ss_pred cCCChHHHHHHHhcCCCCCeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHH
Q 041183 323 KCGQVNDARSIFDYLIFKDSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSH 402 (760)
Q Consensus 323 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 402 (760)
+.|++++|.++++++..| .+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 567788888888888555 4888888999999999999888865 25777888888888888999999887777
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 041183 403 IIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKKNAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFS 482 (760)
Q Consensus 403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 482 (760)
..+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 6663 4457778888889999999988887775 366678888999999999999999999876 4788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHH
Q 041183 483 IVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHE 562 (760)
Q Consensus 483 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 562 (760)
.+..++.+.|+++.|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 8888999999999998888877 367888899999999999999977666554 344445568888999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHh--ccCcHHHHHHHHHHhhhhcCCCC------ChhHHHHHHHHhhhcCChHH
Q 041183 563 VSNLFNKMSKFGVKP-DEITYLAVLTSCC--HAGLVREARTYLSCMSDLHGLIP------QLEHYACIVDLLGRVGLLEG 633 (760)
Q Consensus 563 a~~~~~~m~~~g~~p-~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~ 633 (760)
|+.+++.... ..+ -...|+.|.-+++ +.+++.+.++.|. ..-+++| +...|..++..|...++++.
T Consensus 226 ai~lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 226 LITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 9999988876 334 3344554444444 3444444444444 3234555 46788999999999999998
Q ss_pred HHHHHHhCC--------------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh--ccCCCCchhHHHHHHHHHhcCCh
Q 041183 634 AKMTIDQMP--------------IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLL--ELQPDNESTYVLLSNLYASAGMW 697 (760)
Q Consensus 634 A~~~~~~~~--------------~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~ 697 (760)
|...+-+-+ ...+...|...+.-|. +....++.-+..++ +++| ...+..+.+.|..
T Consensus 301 A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~------~r~v~~~~~~~~l 372 (449)
T 1b89_A 301 AIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDH------TRAVNYFSKVKQL 372 (449)
T ss_dssp HHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCH------HHHHHHHHHTTCT
T ss_pred HHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCc------HHHHHHHHHcCCc
Confidence 887665543 1234455555555554 22223333333333 2222 3444555666666
Q ss_pred hHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHhhhc
Q 041183 698 NDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYKELIKLYEHMVATAK 759 (760)
Q Consensus 698 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (760)
.-...+++.+. +-+.+.+...|-.+|.+.+|.+.
T Consensus 373 ~l~~~yl~~v~----------------------------~~n~~~vnealn~l~ieeed~~~ 406 (449)
T 1b89_A 373 PLVKPYLRSVQ----------------------------NHNNKSVNESLNNLFITEEDYQA 406 (449)
T ss_dssp TTTHHHHHHHH----------------------------TTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH----------------------------HhhHHHHHHHHHHHHHhhhhHHH
Confidence 66666666555 33567888888888888887664
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=3.3e-17 Score=165.91 Aligned_cols=264 Identities=13% Similarity=0.040 Sum_probs=207.6
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHH
Q 041183 441 KNAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVI 520 (760)
Q Consensus 441 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 520 (760)
.++..+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|+++.|..+++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 356677778888888888888888888887764 2344556667777788888888888888888765 35677888888
Q ss_pred HHHHhcC-CHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcH
Q 041183 521 DMYCKCG-TIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPD-EITYLAVLTSCCHAGLV 595 (760)
Q Consensus 521 ~~~~~~~-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~ 595 (760)
..+...| ++++|...|++.. +.+...|..+...+...|++++|+..|+++.+. .|+ ...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhhH
Confidence 8888888 8888888888764 335567888888888888888888888888874 443 46666677888888888
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcCChh
Q 041183 596 REARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP-----------IPPDAHIWQSLLSACTIYGNID 664 (760)
Q Consensus 596 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~p~~~~~~~l~~~~~~~~~~~ 664 (760)
++|...++.+.+ ..+.+...+..++..+...|++++|...++++. .+....+|..+...+...|+++
T Consensus 176 ~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 888888888877 234456788888888888888888888887661 1344668888888888888888
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 665 LGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 665 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
+|+..+++++++.|+++.++..++.+|...|++++|...+++..+.
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 8888888888888888888888888888888888888888876654
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=1.4e-17 Score=171.47 Aligned_cols=263 Identities=13% Similarity=0.039 Sum_probs=190.9
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHH
Q 041183 479 STFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYA 555 (760)
Q Consensus 479 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 555 (760)
..+..+...+...|+++.|...++++.+.. +.+...+..+...+...|++++|...|+++. +.+..++..+...+.
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 143 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 344455555555666666666666655543 2345566666666666666666666666542 335556667777777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHH-HHHH---------------HHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHH
Q 041183 556 QHGCYHEVSNLFNKMSKFGVKPDEI-TYLA---------------VLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYA 619 (760)
Q Consensus 556 ~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~---------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 619 (760)
..|++++|...++++.+. .|+.. .+.. .+..+...|++++|...++.+.+.....++..++.
T Consensus 144 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 221 (368)
T 1fch_A 144 NESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 221 (368)
T ss_dssp HTTCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 777777777777777763 34321 1110 23333488999999999999988322222578899
Q ss_pred HHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCh
Q 041183 620 CIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMW 697 (760)
Q Consensus 620 ~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 697 (760)
.++.++.+.|++++|...++++. .+.+..+|..++..+...|++++|+..+++++++.|+++.++..++.+|.+.|++
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH 301 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999872 4556889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHhhhc
Q 041183 698 NDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYKELIKLYEHMVATAK 759 (760)
Q Consensus 698 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (760)
++|...++++.+........ ....+|....++..++.+|.++|+.++
T Consensus 302 ~~A~~~~~~al~~~~~~~~~---------------~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 302 REAVEHFLEALNMQRKSRGP---------------RGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHHHHTC---------------------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHHhCCCCCCc---------------cccccchhhHHHHHHHHHHHHhCChHh
Confidence 99999999987643211000 012367789999999999999998764
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=5.5e-17 Score=167.10 Aligned_cols=279 Identities=10% Similarity=-0.030 Sum_probs=223.4
Q ss_pred HhcCChHHHHH-HHhhcCCC-------CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCH
Q 041183 423 GKCNALNESKR-VLSEIDKK-------NAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDL 494 (760)
Q Consensus 423 ~~~~~~~~A~~-~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 494 (760)
.-.|++++|.. .+++.... +...+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34577888887 77755431 34568888889999999999999999988764 34566788888889999999
Q ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-ChHhHHH---------------HHHHHHH
Q 041183 495 EQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC--RD-SLAGWNA---------------MMMGYAQ 556 (760)
Q Consensus 495 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~---------------l~~~~~~ 556 (760)
+.|...++++.+.. +.+..++..+...|...|++++|...++++. .| +...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 99999999998876 4578888899999999999999999998774 22 2222221 1333448
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHH
Q 041183 557 HGCYHEVSNLFNKMSKFGVKPD---EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEG 633 (760)
Q Consensus 557 ~~~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 633 (760)
.|++++|...|+++.+. .|+ ...+..+...+...|++++|...++.+.+ ..+.+...+..++.++...|++++
T Consensus 194 ~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHcCCHHH
Confidence 89999999999999984 554 68888899999999999999999999988 234457889999999999999999
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-----------chhHHHHHHHHHhcCChhHH
Q 041183 634 AKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDN-----------ESTYVLLSNLYASAGMWNDV 700 (760)
Q Consensus 634 A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A 700 (760)
|.+.++++. .+.+..++..+...+...|++++|...+++++++.|++ ..++..++.+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 999999882 45668899999999999999999999999999998877 79999999999999999999
Q ss_pred HHHHHHH
Q 041183 701 GKLRKEM 707 (760)
Q Consensus 701 ~~~~~~~ 707 (760)
..++++.
T Consensus 350 ~~~~~~~ 356 (368)
T 1fch_A 350 GAADARD 356 (368)
T ss_dssp HHHHTTC
T ss_pred HHhHHHH
Confidence 9988753
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=1.4e-15 Score=162.64 Aligned_cols=365 Identities=10% Similarity=-0.031 Sum_probs=288.6
Q ss_pred CchhHhHHHHhhhc----CCChHHHHHHHhcCCC-CCeeeHHHHHHHHHh----cCCccHHHHHHHHHHHCCCCCCHhhH
Q 041183 310 VVSIGNALISMYGK----CGQVNDARSIFDYLIF-KDSVSWNSMIAGYSE----NGFFNQALDMFCHMLEFSLIPNGYTM 380 (760)
Q Consensus 310 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~ 380 (760)
++..+..+...|.. .+++++|...|++..+ .+...+..|...|.. .+++++|.+.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44555556666665 7888888888887633 366677778888888 888999999999988764 55566
Q ss_pred HHHHHHhcC----cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChHHHHHHHhhcCC-CCcccHHHHHH
Q 041183 381 ASILEAVSN----SKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGK----CNALNESKRVLSEIDK-KNAVHINALAS 451 (760)
Q Consensus 381 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~ 451 (760)
..+...+.. .+++++|...|+...+.| +...+..|...|.. .++.++|.+.|++..+ .++..+..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666666 779999999999988876 56677778888877 7889999999987654 46677888888
Q ss_pred HHHh----cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Q 041183 452 VLVY----ASCHAEALELYRTIWGSCREVNGSTFSIVLKACAA----MTDLEQGKAIHCLALKARYDQDIFVESAVIDMY 523 (760)
Q Consensus 452 ~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 523 (760)
.|.. .++.++|++.|++..+.| +...+..+...+.. .++.++|..++++..+.+ +...+..+...|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 8887 889999999999988765 45666677776664 789999999999988764 456677788888
Q ss_pred Hh----cCCHHHHHHHHHhcCC-CChHhHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 041183 524 CK----CGTIEDAKRAFRKICR-DSLAGWNAMMMGYAQH-----GCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAG 593 (760)
Q Consensus 524 ~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 593 (760)
.. .+++++|..+|++..+ .+...+..+...|... +++++|+..|++..+.| +...+..+...+...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 87 8999999999998754 4566788888888887 89999999999999864 3455666666666656
Q ss_pred ---cHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 041183 594 ---LVREARTYLSCMSDLHGLIPQLEHYACIVDLLGR----VGLLEGAKMTIDQMPIPPDAHIWQSLLSACTI----YGN 662 (760)
Q Consensus 594 ---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~ 662 (760)
++++|.+.|+...+ . .++..+..|...|.. .+++++|.++|++.-...++..+..|...+.. .+|
T Consensus 343 ~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAA-K---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp CHHHHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred CcccHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCC
Confidence 88999999999988 3 457788889999988 89999999999988434568888889999888 899
Q ss_pred hhHHHHHHHHHhccCCC---CchhHHHHHHHHHh
Q 041183 663 IDLGLLAGSKLLELQPD---NESTYVLLSNLYAS 693 (760)
Q Consensus 663 ~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 693 (760)
+++|...|+++.+.+|+ ++.+...++.++..
T Consensus 419 ~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 419 YVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99999999999999854 77777777776654
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=6.9e-16 Score=151.69 Aligned_cols=270 Identities=10% Similarity=-0.028 Sum_probs=214.0
Q ss_pred HHHHhcCChHHHHHHHhhcCCCCcc----cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHH
Q 041183 420 TTYGKCNALNESKRVLSEIDKKNAV----HINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLE 495 (760)
Q Consensus 420 ~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 495 (760)
+-....|++..|+..++.....++. ....+..+|...|++++|+..++.. -.|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 3345678888888888877654432 3345678888999998888766542 3566678888888999999999
Q ss_pred HHHHHHHHHHHcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 041183 496 QGKAIHCLALKARYDQ-DIFVESAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFG 574 (760)
Q Consensus 496 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 574 (760)
.|.+.++++...+..| ++..+..+...+...|++++|.+.+++ ..+...+..++..+.+.|++++|.+.|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 9999999998876434 566777888999999999999999998 567788999999999999999999999999984
Q ss_pred CCCCHHHHH---HHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHH
Q 041183 575 VKPDEITYL---AVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM-P-IPPDAHI 649 (760)
Q Consensus 575 ~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~ 649 (760)
.|+..... .++..+...|++++|..+|+++.+ ..+.+...++.++.++.+.|++++|.+.++++ . .+.++.+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD--KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 57653222 223444566999999999999998 35667889999999999999999999999987 2 4557889
Q ss_pred HHHHHHHHHhcCChhH-HHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHH
Q 041183 650 WQSLLSACTIYGNIDL-GLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKL 703 (760)
Q Consensus 650 ~~~l~~~~~~~~~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 703 (760)
+..++..+...|+.++ +.+++++++++.|+++.+.. ...+.+.+++|..-
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHH
Confidence 9999999999999875 67899999999998887654 34455555555443
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.75 E-value=1.3e-14 Score=155.18 Aligned_cols=352 Identities=11% Similarity=-0.027 Sum_probs=295.6
Q ss_pred CCeeeHHHHHHHHHh----cCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcC----cCCHHHHHHHHHHHHHhCCCCC
Q 041183 340 KDSVSWNSMIAGYSE----NGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSN----SKSLKQAMQVHSHIIKSGFLLD 411 (760)
Q Consensus 340 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 411 (760)
.+...+..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...|+...+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 466677777778877 899999999999998864 55677777777777 899999999999998876 6
Q ss_pred hhHHHHHHHHHHh----cCChHHHHHHHhhcCCC-CcccHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChhHHH
Q 041183 412 DSMISCLITTYGK----CNALNESKRVLSEIDKK-NAVHINALASVLVY----ASCHAEALELYRTIWGSCREVNGSTFS 482 (760)
Q Consensus 412 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~ 482 (760)
...+..|...|.. .+++++|...|++..+. ++..+..+...|.. .++.++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6777788888888 88999999999987654 56778888888887 789999999999998865 567777
Q ss_pred HHHHHHhc----cCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh----cCCHHHHHHHHHhcC-CCChHhHHHHHHH
Q 041183 483 IVLKACAA----MTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCK----CGTIEDAKRAFRKIC-RDSLAGWNAMMMG 553 (760)
Q Consensus 483 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~l~~~ 553 (760)
.+...+.. .++.++|..++++..+.+ ++..+..+...|.. .+++++|..+|++.. ..+...+..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 78777776 899999999999998865 56678888888886 889999999999875 4456678888888
Q ss_pred HHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 041183 554 YAQ----HGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHA-----GLVREARTYLSCMSDLHGLIPQLEHYACIVDL 624 (760)
Q Consensus 554 ~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 624 (760)
|.. .+++++|+..|++..+.| +...+..+...+... +++++|...|+...+ .+ +...+..|...
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-QG---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-cC---CHHHHHHHHHH
Confidence 888 899999999999998764 445666677777776 899999999999988 32 45677888888
Q ss_pred hhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCchhHHHHHHHHHh----
Q 041183 625 LGRVG---LLEGAKMTIDQMPIPPDAHIWQSLLSACTI----YGNIDLGLLAGSKLLELQPDNESTYVLLSNLYAS---- 693 (760)
Q Consensus 625 ~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 693 (760)
|...| ++++|+++|++.-...++..+..|...+.. .+++++|...++++.+.. ++.++..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 88766 889999999988434678899999999988 899999999999999864 68899999999999
Q ss_pred cCChhHHHHHHHHHHhCCC
Q 041183 694 AGMWNDVGKLRKEMKEKFL 712 (760)
Q Consensus 694 ~g~~~~A~~~~~~~~~~~~ 712 (760)
.+++++|...|++..+.+.
T Consensus 416 ~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 8999999999999988763
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=1.6e-16 Score=163.39 Aligned_cols=262 Identities=12% Similarity=-0.003 Sum_probs=186.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHH
Q 041183 480 TFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQ 556 (760)
Q Consensus 480 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 556 (760)
.+..+...+...|+++.|..+++.+.+.. +.+..++..+...|...|++++|...|+++. +.+..+|..+..+|..
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 35555555555566666666666555544 3456666677777777777777777776653 3445677778888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHh
Q 041183 557 HGCYHEVSNLFNKMSKFGVKPDE-----------ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLL 625 (760)
Q Consensus 557 ~~~~~~a~~~~~~m~~~g~~p~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 625 (760)
.|++++|...|+++.+ ..|+. ..+..+...+...|++++|...++++.+.....++...+..++..|
T Consensus 146 ~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 146 TSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp TTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 8888888888888877 34432 2233446788899999999999999988322223678899999999
Q ss_pred hhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHH
Q 041183 626 GRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKL 703 (760)
Q Consensus 626 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 703 (760)
.+.|++++|.+.++++. .+.+..+|..++..+...|++++|+..+++++++.|+++.++..++.+|.+.|++++|+..
T Consensus 224 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999872 4567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHhhh
Q 041183 704 RKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYKELIKLYEHMVATA 758 (760)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (760)
++++.+......... ..........++..+++.+..+++.+
T Consensus 304 ~~~al~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~g~~~ 344 (365)
T 4eqf_A 304 FLTALSLQRKSRNQQ--------------QVPHPAISGNIWAALRIALSLMDQPE 344 (365)
T ss_dssp HHHHHHHHHCC--------------------------CHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCcccCCCc--------------ccchhhhHHHHHHHHHHHHHHcCcHH
Confidence 999886432111000 00011224678888999888887654
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=8.3e-15 Score=158.45 Aligned_cols=411 Identities=7% Similarity=0.003 Sum_probs=254.1
Q ss_pred CcchHHHHHHhhcCCCcchHHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcCCC--CCeeeHHHHHHHH
Q 041183 275 NEYTMINLLSSVGGERILRAGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYLIF--KDSVSWNSMIAGY 352 (760)
Q Consensus 275 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~ 352 (760)
|...|..++.. .+.|+++.|..+++.+++. .+.+...|..++..+.+.|++++|..+|++... |+...|...+...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 34455555553 4456666666666666543 233445566666666666666666666666532 3434444444322
Q ss_pred -HhcCCccHHHH----HHHHHHHC-CCCC-CHhhHHHHHHHhcC---------cCCHHHHHHHHHHHHHhCCCCChhHHH
Q 041183 353 -SENGFFNQALD----MFCHMLEF-SLIP-NGYTMASILEAVSN---------SKSLKQAMQVHSHIIKSGFLLDDSMIS 416 (760)
Q Consensus 353 -~~~g~~~~a~~----~~~~m~~~-~~~p-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 416 (760)
...|+.+.|.+ +|+..... |..| +...|...+..... .|+++.|..+|+..++....+....|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 23455555544 44444332 3333 23334444433322 455556666665555411000011222
Q ss_pred HHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCChhHHHHHHHHH------HhCC---CCCCh--------h
Q 041183 417 CLITTYGKCNALNESKRVLSEIDKKNAVHINALASVLVYASCHAEALELYRTI------WGSC---REVNG--------S 479 (760)
Q Consensus 417 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m------~~~~---~~~~~--------~ 479 (760)
.........|. ..+..++. .+.+++.+|..++.++ .+.. +.|+. .
T Consensus 170 ~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 170 DYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 11111000000 00111110 0234455666666552 2211 23331 3
Q ss_pred HHHHHHHHHhc----cCCH----HHHHHHHHHHHHcCCCCCchHHHHHHHHHHh-------cCCHH-------HHHHHHH
Q 041183 480 TFSIVLKACAA----MTDL----EQGKAIHCLALKARYDQDIFVESAVIDMYCK-------CGTIE-------DAKRAFR 537 (760)
Q Consensus 480 ~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~ 537 (760)
.|...+..... .++. ..+..+|+++.... +.++..|..++..+.+ .|+++ +|..+|+
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~ 310 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE 310 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH
Confidence 44444432221 1232 46778888888864 4578888888888876 68887 8999999
Q ss_pred hcCC---C-ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCC
Q 041183 538 KICR---D-SLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDE--ITYLAVLTSCCHAGLVREARTYLSCMSDLHGL 611 (760)
Q Consensus 538 ~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 611 (760)
+... | +...|..++..+.+.|++++|..+|+++.+ +.|+. ..|..++..+.+.|+++.|+++|+.+.+ .
T Consensus 311 ~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~ 385 (530)
T 2ooe_A 311 RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---D 385 (530)
T ss_dssp HHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---C
T ss_pred HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---c
Confidence 8753 3 566899999999999999999999999998 56753 4788888888899999999999999987 2
Q ss_pred CC-ChhHHHHHHHH-hhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch----h
Q 041183 612 IP-QLEHYACIVDL-LGRVGLLEGAKMTIDQM-P-IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNES----T 683 (760)
Q Consensus 612 ~~-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~ 683 (760)
+| +...|...+.. +...|++++|..+|++. . .+.++..|..++..+...|+.++|..+|++++...|.++. .
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 33 33444333322 34689999999999987 2 3456889999999999999999999999999998776655 7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 041183 684 YVLLSNLYASAGMWNDVGKLRKEMKEKF 711 (760)
Q Consensus 684 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (760)
|...+......|+.+.+..+.+++.+..
T Consensus 466 w~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 466 WARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 7788888889999999999999987643
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=8.9e-17 Score=165.25 Aligned_cols=259 Identities=9% Similarity=-0.053 Sum_probs=215.1
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHH
Q 041183 442 NAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVID 521 (760)
Q Consensus 442 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 521 (760)
+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|...++++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44568888899999999999999999998764 3466788899999999999999999999998875 356888999999
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC-------------hHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHH
Q 041183 522 MYCKCGTIEDAKRAFRKICRDS-------------LAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP---DEITYLAV 585 (760)
Q Consensus 522 ~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~l 585 (760)
.|...|++++|...|+++...+ ...+..+...+...|++++|...|+++.+. .| +...+..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHH
Confidence 9999999999999998874221 123344578899999999999999999984 45 46888899
Q ss_pred HHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCh
Q 041183 586 LTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNI 663 (760)
Q Consensus 586 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~ 663 (760)
...+...|++++|...|+.+.+ ..+.+..+|..++.+|...|++++|.+.++++- .+.+..+|..+...+...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 9999999999999999999988 244568899999999999999999999999882 345688999999999999999
Q ss_pred hHHHHHHHHHhccCCC------------CchhHHHHHHHHHhcCChhHHHHHHHH
Q 041183 664 DLGLLAGSKLLELQPD------------NESTYVLLSNLYASAGMWNDVGKLRKE 706 (760)
Q Consensus 664 ~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 706 (760)
++|...+++++++.|+ +..++..++.++...|+.+.|....++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999998876 378899999999999999999888765
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=3.2e-16 Score=154.04 Aligned_cols=248 Identities=10% Similarity=-0.014 Sum_probs=203.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCH
Q 041183 450 ASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTI 529 (760)
Q Consensus 450 ~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 529 (760)
+......|+++.|+..++........+.......+..++...|+++.|...++. .-+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 345667899999999998875433222223556678899999999999986654 2356778888999999999999
Q ss_pred HHHHHHHHhcC----CC-ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 041183 530 EDAKRAFRKIC----RD-SLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSC 604 (760)
Q Consensus 530 ~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 604 (760)
++|.+.++++. .| +...+..+...+.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.|+.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999863 24 556778888999999999999999987 35678888899999999999999999999
Q ss_pred hhhhcCCCCChhH---HHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 041183 605 MSDLHGLIPQLEH---YACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPD 679 (760)
Q Consensus 605 ~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 679 (760)
+.+ ..|+... ...++..+...|++++|..+|+++. .+.++..|+.+..++...|++++|+..++++++++|+
T Consensus 156 ~~~---~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 156 MQD---QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHH---HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHh---hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 988 2455321 1234455556699999999999983 5678899999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhcCChhH-HHHHHHHHHhC
Q 041183 680 NESTYVLLSNLYASAGMWND-VGKLRKEMKEK 710 (760)
Q Consensus 680 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~ 710 (760)
++.++..++.++...|++++ +.++++++.+.
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999999999986 57899998866
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=5.5e-16 Score=156.58 Aligned_cols=259 Identities=11% Similarity=-0.037 Sum_probs=200.3
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Q 041183 444 VHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMY 523 (760)
Q Consensus 444 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 523 (760)
..+..+...+...|++++|...|+++.+.. +.+...+..+..++...|+++.|...++++.+.. +.+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345556666677777777777777766643 2245566667777777777777777777777754 34566777777777
Q ss_pred HhcCCHHHHHHHHHhcC---CCChHhHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 041183 524 CKCGTIEDAKRAFRKIC---RDSLAGWNAM--------------MM-GYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLA 584 (760)
Q Consensus 524 ~~~~~~~~A~~~~~~~~---~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ 584 (760)
...|++++|...++++. +.+...+..+ .. .+...|++++|...++++.+. .| +...+..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHHHHH
Confidence 77888888877777663 1222233222 22 367788999999999999884 45 5678888
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC
Q 041183 585 VLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGN 662 (760)
Q Consensus 585 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~ 662 (760)
+...+...|++++|...++.+.+ ..+.+...+..++..+...|++++|.+.++++. .+.+..+|..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVE--LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 88999999999999999999987 234467889999999999999999999999872 45568899999999999999
Q ss_pred hhHHHHHHHHHhccCCC------------CchhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041183 663 IDLGLLAGSKLLELQPD------------NESTYVLLSNLYASAGMWNDVGKLRKEMK 708 (760)
Q Consensus 663 ~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (760)
+++|...++++++..|+ ++.++..++.++...|++++|..++++..
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999999998 78999999999999999999999987543
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=1.7e-15 Score=151.38 Aligned_cols=280 Identities=9% Similarity=0.074 Sum_probs=123.3
Q ss_pred hcCCHHHHHHHhccCCCCCcchHHHHHHhhc---ChhHHHHHHHHHhhCCccCCcchHHHHHHhhcCCCcchHHHHHHHH
Q 041183 225 RCGQKLDAVKMFDEITEPDVVSWSERIAAAC---DGVEAFGLFKDLRFNDFQINEYTMINLLSSVGGERILRAGKQIQAF 301 (760)
Q Consensus 225 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 301 (760)
+.|+.++|.++++++..|+ .|..+..++. +.++|++.|.+ .+|..+|..++.++...|++++|...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6688999999999997665 7888888877 88888888864 36778999999999999999999998877
Q ss_pred HHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcCCCCCeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHH
Q 041183 302 CYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYLIFKDSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMA 381 (760)
Q Consensus 302 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 381 (760)
..+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 7764 45577888999999999999998888864 67779999999999999999999999976 4788
Q ss_pred HHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCChhH
Q 041183 382 SILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKKNAVHINALASVLVYASCHAE 461 (760)
Q Consensus 382 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 461 (760)
.+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 8999999999999999988877 278889999999999999999977776654 444445567788888888999
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHhc--cCCHHHHHHHHHHHHHcCCCC------CchHHHHHHHHHHhcCCHHHHH
Q 041183 462 ALELYRTIWGSCREVNGSTFSIVLKACAA--MTDLEQGKAIHCLALKARYDQ------DIFVESAVIDMYCKCGTIEDAK 533 (760)
Q Consensus 462 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~ 533 (760)
|+.+++...... +.....|+-+..++++ .+++.+..+.|.. +.+++| +...|.-++..|...++++.|.
T Consensus 226 ai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 226 LITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 888888876544 3344455555444443 3333333333321 122222 4566777777777777777776
Q ss_pred HHH
Q 041183 534 RAF 536 (760)
Q Consensus 534 ~~~ 536 (760)
.+.
T Consensus 303 ~tm 305 (449)
T 1b89_A 303 ITM 305 (449)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=1.4e-15 Score=153.52 Aligned_cols=263 Identities=11% Similarity=0.004 Sum_probs=214.9
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHH
Q 041183 477 NGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMG 553 (760)
Q Consensus 477 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~ 553 (760)
+...+..+...+...|+++.|..+++++.+.. +.+...+..+...+...|++++|...++++. +.+...+..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 33456777888899999999999999999876 3578888999999999999999999999874 4567789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH--------------HH-HHhccCcHHHHHHHHHHhhhhcCCCCChhH
Q 041183 554 YAQHGCYHEVSNLFNKMSKFGVKPDEI-TYLAV--------------LT-SCCHAGLVREARTYLSCMSDLHGLIPQLEH 617 (760)
Q Consensus 554 ~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 617 (760)
+...|++++|.+.++++.+. .|+.. .+..+ .. .+...|++++|...++.+.+ ..+.+...
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ 174 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE--MNPNDAQL 174 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHH--HSTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh--hCCCCHHH
Confidence 99999999999999999984 45432 22222 22 37888999999999999988 23446788
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcC
Q 041183 618 YACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAG 695 (760)
Q Consensus 618 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 695 (760)
+..++..+.+.|++++|.+.++++. .+.+..+|..+...+...|++++|+..++++++..|+++.++..++.+|...|
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999882 45568899999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHhhh
Q 041183 696 MWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYKELIKLYEHMVATA 758 (760)
Q Consensus 696 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (760)
++++|...++++.+........ .++.++......+..++.+|.++|+.+
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTP--------------TGEASREATRSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-------------------CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHHHHhCCccccc--------------cccchhhcCHHHHHHHHHHHHhcCCHH
Confidence 9999999999988653221110 011112337888999999999988765
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=7e-15 Score=156.99 Aligned_cols=327 Identities=11% Similarity=-0.054 Sum_probs=169.0
Q ss_pred hHHHHHHHhcCcCCHHHHHHHHHHHHHhC------CC-CChhHHHHHHHHHHhc--CChHHHHHHHhhcCC--C-CcccH
Q 041183 379 TMASILEAVSNSKSLKQAMQVHSHIIKSG------FL-LDDSMISCLITTYGKC--NALNESKRVLSEIDK--K-NAVHI 446 (760)
Q Consensus 379 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~-~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~--~-~~~~~ 446 (760)
+|..+..++...|++++|...++...+.. .. ....++..+..++... +++++|...|++..+ | ++..+
T Consensus 96 ~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~ 175 (472)
T 4g1t_A 96 TWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFT 175 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHH
Confidence 44445555555555555555554443210 00 1122333333333332 245555555554432 1 22233
Q ss_pred HHHHHH---HHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHh----ccCCHHHHHHHHHHHHHcCCCCCchHHHHH
Q 041183 447 NALASV---LVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACA----AMTDLEQGKAIHCLALKARYDQDIFVESAV 519 (760)
Q Consensus 447 ~~l~~~---~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 519 (760)
..+..+ +...++.++|++.+++..+.. +.+...+..+...+. ..++.+.|.+.+++..... +.+..++..+
T Consensus 176 ~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~l 253 (472)
T 4g1t_A 176 SGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSA 253 (472)
T ss_dssp HHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHH
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHH
Confidence 333222 233455555666665555432 112233333332222 2345556666666665544 2445556666
Q ss_pred HHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHH-------------------cCCHHHHHHHHHHHHHCCCCC
Q 041183 520 IDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQ-------------------HGCYHEVSNLFNKMSKFGVKP 577 (760)
Q Consensus 520 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~m~~~g~~p 577 (760)
...|...|++++|...+++.. +.+..++..+..+|.. .+.++.|...+++..+ ..|
T Consensus 254 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~ 331 (472)
T 4g1t_A 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--AND 331 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCT
T ss_pred HHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCC
Confidence 666666666666666666542 2233344444444322 2345678888888777 445
Q ss_pred -CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChh----HHHHHHHH-hhhcCChHHHHHHHHhC-CCCCCHHHH
Q 041183 578 -DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLE----HYACIVDL-LGRVGLLEGAKMTIDQM-PIPPDAHIW 650 (760)
Q Consensus 578 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p~~~~~ 650 (760)
+...+..+...+...|++++|...|+++.+ ..|+.. .+..+... +...|++++|++.+++. .+.|+...+
T Consensus 332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~ 408 (472)
T 4g1t_A 332 NLFRVCSILASLHALADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK 408 (472)
T ss_dssp TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH
T ss_pred chhhhhhhHHHHHHHhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH
Confidence 346677788889999999999999999887 233322 23333332 34678999999998876 355654333
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEE
Q 041183 651 QSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWI 721 (760)
Q Consensus 651 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 721 (760)
.. ....+..+++++++.+|+++.++..++.+|...|++++|++.|++..+.+.....+.+|+
T Consensus 409 ~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 409 EK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 22 234456678888889999999999999999999999999999999988776555555554
No 33
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.66 E-value=1.6e-13 Score=148.38 Aligned_cols=404 Identities=11% Similarity=0.057 Sum_probs=274.8
Q ss_pred CcchHHHHHHhhc--ChhHHHHHHHHHhhCCccCCcchHHHHHHhhcCCCcchHHHHHHHHHHHHcCCCCchhHhHHHHh
Q 041183 243 DVVSWSERIAAAC--DGVEAFGLFKDLRFNDFQINEYTMINLLSSVGGERILRAGKQIQAFCYKVGFMEVVSIGNALISM 320 (760)
Q Consensus 243 ~~~~~~~ll~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 320 (760)
+...|..++.... +.++|..+|+.+.... +-+...|...+..+.+.|+.+.|..+|+..++.. |+...|..++..
T Consensus 12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIREAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHH
Confidence 5567887777432 8999999999998742 4455678888999999999999999999998765 567777777653
Q ss_pred h-hcCCChHHHHH----HHhcCC------CCCeeeHHHHHHHHHh---------cCCccHHHHHHHHHHHCCCCCCH---
Q 041183 321 Y-GKCGQVNDARS----IFDYLI------FKDSVSWNSMIAGYSE---------NGFFNQALDMFCHMLEFSLIPNG--- 377 (760)
Q Consensus 321 ~-~~~g~~~~A~~----~~~~~~------~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~~~~p~~--- 377 (760)
. ...|+.+.|.+ +|+... .++...|...+..... .|+++.|..+|++..+. |+.
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~~ 165 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINIE 165 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhHH
Confidence 3 34677777665 666541 2355677777776554 68899999999999873 432
Q ss_pred hhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhh-------cCC------CC--
Q 041183 378 YTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSE-------IDK------KN-- 442 (760)
Q Consensus 378 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-------~~~------~~-- 442 (760)
..|..........+ ...+..++. .+.+++..|..++.. +.. |+
T Consensus 166 ~~~~~~~~~e~~~~-~~~~~~~l~---------------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~ 223 (530)
T 2ooe_A 166 QLWRDYNKYEEGIN-IHLAKKMIE---------------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNT 223 (530)
T ss_dssp HHHHHHHHHHHHHC-HHHHHHHHH---------------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--
T ss_pred HHHHHHHHHHHhhc-hhHHHHHHH---------------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCC
Confidence 23322221110000 001111110 012223333333322 111 11
Q ss_pred ------cccHHHHHHHHHhc----CCh----hHHHHHHHHHHhCCCCCChhHHHHHHHHHhc-------cCCHH------
Q 041183 443 ------AVHINALASVLVYA----SCH----AEALELYRTIWGSCREVNGSTFSIVLKACAA-------MTDLE------ 495 (760)
Q Consensus 443 ------~~~~~~l~~~~~~~----~~~----~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------~~~~~------ 495 (760)
...|...+...... ++. .++..+|++..... +.+...|......+.. .|+++
T Consensus 224 ~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~ 302 (530)
T 2ooe_A 224 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 302 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhh
Confidence 12333333222221 222 36777888877652 3355667777666654 68876
Q ss_pred -HHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-Ch-HhHHHHHHHHHHcCCHHHHHHHHHHH
Q 041183 496 -QGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC--RD-SL-AGWNAMMMGYAQHGCYHEVSNLFNKM 570 (760)
Q Consensus 496 -~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~-~~~~~l~~~~~~~~~~~~a~~~~~~m 570 (760)
.|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++. .| +. ..|..++..+.+.|++++|.++|++.
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 889999998863234568888999999999999999999999874 33 33 47888999999999999999999999
Q ss_pred HHCCCCCC-HHHHHHHHHH-HhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC----CC
Q 041183 571 SKFGVKPD-EITYLAVLTS-CCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP----IP 644 (760)
Q Consensus 571 ~~~g~~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~ 644 (760)
.+. .|+ ...|...... +...|++++|..+|+...+. .+.+...|..++..+.+.|+.++|..+|+++- ..
T Consensus 383 l~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 383 RED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred Hhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 884 443 2333322222 33689999999999999882 33457889999999999999999999999872 23
Q ss_pred CC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 041183 645 PD--AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPD 679 (760)
Q Consensus 645 p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 679 (760)
|+ ...|...+......|+.+.+..+.+++.+..|+
T Consensus 459 ~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 459 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp GGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 32 558888888888999999999999999998884
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=7.5e-15 Score=142.46 Aligned_cols=218 Identities=10% Similarity=-0.013 Sum_probs=165.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCC------CC----hHhHHH
Q 041183 480 TFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICR------DS----LAGWNA 549 (760)
Q Consensus 480 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~----~~~~~~ 549 (760)
.+..+...+...|+++.|...++++.+.. .+...+..+...+...|++++|...+++... ++ ...|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444455555555555555555555554 4555666666666666666666666655421 11 356777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcC
Q 041183 550 MMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVG 629 (760)
Q Consensus 550 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 629 (760)
+...+...|++++|...|+++.+ ..|+. ..+...|++++|...++.+.. ..+.+...+..++..+...|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhc
Confidence 88888888888888888888888 45663 335566888999999998887 23335677888889999999
Q ss_pred ChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHH
Q 041183 630 LLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEM 707 (760)
Q Consensus 630 ~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (760)
++++|.+.++++. .+.+..+|..+...+...|++++|+..++++++..|+++.++..++.++...|++++|...+++.
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999998872 45568889999999999999999999999999999999999999999999999999999999998
Q ss_pred HhC
Q 041183 708 KEK 710 (760)
Q Consensus 708 ~~~ 710 (760)
.+.
T Consensus 234 ~~~ 236 (258)
T 3uq3_A 234 RTK 236 (258)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=8e-14 Score=148.76 Aligned_cols=363 Identities=11% Similarity=-0.033 Sum_probs=201.6
Q ss_pred chhHhHHHHhhhcCCChHHHHHHHhcCC-----------CC-CeeeHHHHHHHHHhcCCccHHHHHHHHHHHC-----C-
Q 041183 311 VSIGNALISMYGKCGQVNDARSIFDYLI-----------FK-DSVSWNSMIAGYSENGFFNQALDMFCHMLEF-----S- 372 (760)
Q Consensus 311 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~- 372 (760)
..+||.|...+...|+.++|++.|++.. .+ ...+|+.+...|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4456666666666666666666665431 11 2345666677777777777777766665431 0
Q ss_pred CCC-CHhhHHHHHHHhc--CcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHH---HHhcCChHHHHHHHhhcCC---CCc
Q 041183 373 LIP-NGYTMASILEAVS--NSKSLKQAMQVHSHIIKSGFLLDDSMISCLITT---YGKCNALNESKRVLSEIDK---KNA 443 (760)
Q Consensus 373 ~~p-~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~A~~~~~~~~~---~~~ 443 (760)
..+ ...++.....++. ..+++++|...|+...+.... ++..+..+..+ +...++.++|++.+++..+ .+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 011 2233443333333 234567777777776665422 33344433333 3344555666666655432 233
Q ss_pred ccHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHH
Q 041183 444 VHINALASVLVY----ASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAV 519 (760)
Q Consensus 444 ~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 519 (760)
..+..+...+.. .++.++|.+.+++..... +.+...+..+...+...|+++.|...++++.+.. +.+..++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 344444444433 345667777777766543 2344566677777777778888877777777754 2345555555
Q ss_pred HHHHHh-------------------cCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 041183 520 IDMYCK-------------------CGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP 577 (760)
Q Consensus 520 ~~~~~~-------------------~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 577 (760)
...|.. .+..+.|...+++.. +.+...+..+...+...|++++|+..|++..+....|
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence 555432 223566777776653 4456688999999999999999999999999854333
Q ss_pred CHH--HHHHHHH-HHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHH
Q 041183 578 DEI--TYLAVLT-SCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM-P-IPPDAHIWQS 652 (760)
Q Consensus 578 ~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ 652 (760)
... .+..+.. .....|++++|+..|++..+ +.|+........ ..+.++++.. . .+.++.+|..
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~ 435 (472)
T 4g1t_A 368 VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHV 435 (472)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHH
Confidence 221 2222222 34578999999999999987 666643332222 2333444433 1 4567789999
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHH
Q 041183 653 LLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLS 688 (760)
Q Consensus 653 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 688 (760)
+...+...|++++|++.|+++++++|.+|.+...+|
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHCC------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 999999999999999999999999998888776655
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=7.6e-15 Score=137.71 Aligned_cols=193 Identities=12% Similarity=0.040 Sum_probs=154.7
Q ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 041183 510 DQDIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPD-EITYLAV 585 (760)
Q Consensus 510 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l 585 (760)
+++...+..+...+...|++++|...|++.. +.+...|..+...+.+.|++++|+..|++..+ ..|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 4667788888888889999999999888764 34566888888999999999999999999988 5674 5677778
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHH
Q 041183 586 LTSCCHA-----------GLVREARTYLSCMSDLHGLIP-QLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQ 651 (760)
Q Consensus 586 ~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~ 651 (760)
..++... |++++|+..++.+.+ ..| +...+..+..++...|++++|+..|+++- . .++..+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHH
Confidence 8888888 999999999999988 344 57888999999999999999999999872 4 7889999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041183 652 SLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMK 708 (760)
Q Consensus 652 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (760)
.+..++...|++++|+..+++++++.|+++.++..++.++...|++++|+..+++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999998754
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=3.2e-14 Score=137.93 Aligned_cols=233 Identities=11% Similarity=-0.016 Sum_probs=190.0
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC--CC----chHHHH
Q 041183 445 HINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYD--QD----IFVESA 518 (760)
Q Consensus 445 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 518 (760)
.+..+...+...|++++|+..|++..+.. .+...+..+..++...|+++.|...+.++.+.... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45666777788888888888888887776 67778888888888888999998888888774421 12 577888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC--CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcH
Q 041183 519 VIDMYCKCGTIEDAKRAFRKIC--RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPD-EITYLAVLTSCCHAGLV 595 (760)
Q Consensus 519 l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~ 595 (760)
+...+...|++++|...|++.. .++ ...+...|++++|...++++.. ..|+ ...+..+...+...|++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCH
Confidence 8899999999999999998774 333 2456677889999999999988 4564 46777888899999999
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041183 596 REARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKL 673 (760)
Q Consensus 596 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 673 (760)
++|...++.+.+ ..+.+...+..++.++.+.|++++|.+.++++. .+.+..+|..+...+...|++++|...++++
T Consensus 156 ~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999988 234467889999999999999999999999882 4556888999999999999999999999999
Q ss_pred hccC------CCCchhHHHHHHH
Q 041183 674 LELQ------PDNESTYVLLSNL 690 (760)
Q Consensus 674 ~~~~------p~~~~~~~~l~~~ 690 (760)
+++. |++..++..+..+
T Consensus 234 ~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 234 RTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHhChhhcCCCchHHHHHHHHHh
Confidence 9998 8777777766543
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=1.1e-13 Score=135.80 Aligned_cols=241 Identities=9% Similarity=-0.120 Sum_probs=192.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCC---ChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHH
Q 041183 455 YASCHAEALELYRTIWGSCREV---NGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIED 531 (760)
Q Consensus 455 ~~~~~~~A~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 531 (760)
..|++++|+..|+++.+..... +..++..+...+...|+++.|...++++.+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 3567888888888888764221 34567788888899999999999999998876 3568889999999999999999
Q ss_pred HHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhh
Q 041183 532 AKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDL 608 (760)
Q Consensus 532 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 608 (760)
|...|++.. +.+...|..+...+.+.|++++|...|+++.+ ..|+.......+..+...|++++|...++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~- 172 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE- 172 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh-
Confidence 999998874 44677899999999999999999999999998 567665555555666778999999999988877
Q ss_pred cCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch
Q 041183 609 HGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP-IPPD-----AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNES 682 (760)
Q Consensus 609 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 682 (760)
..+++...+ .++..+...++.++|.+.++++- ..|+ ...|..+...+...|++++|...+++++++.|++..
T Consensus 173 -~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 173 -KSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp -HSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred -cCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 234444444 47777888889999999998873 2332 578889999999999999999999999999997755
Q ss_pred hHHHHHHHHHhcCChhHHHHHH
Q 041183 683 TYVLLSNLYASAGMWNDVGKLR 704 (760)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~ 704 (760)
.+ +.++...|++++|++.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 66788899999998876
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=1.7e-13 Score=133.99 Aligned_cols=245 Identities=10% Similarity=-0.044 Sum_probs=142.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--chHHHHHHHHHH
Q 041183 447 NALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQD--IFVESAVIDMYC 524 (760)
Q Consensus 447 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 524 (760)
......+...|++++|+..|++..+... .+...+..+..++...|+++.|...++++.+....++ ...|..+...+.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 3344455555555555555555554321 1223455555555556666666666655555221111 122555666666
Q ss_pred hcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHH
Q 041183 525 KCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREART 600 (760)
Q Consensus 525 ~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~ 600 (760)
..|++++|...|++.. +.+...|..+...|...|++++|+..|++..+. .| +...+..+...+...+++++|..
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666542 334456666666666677777777777666653 44 33444444423334457777777
Q ss_pred HHHHhhhhcCCCCChhHHHHHHHHhhhcCC---hHHHHHHHHhCC----CCCC------HHHHHHHHHHHHhcCChhHHH
Q 041183 601 YLSCMSDLHGLIPQLEHYACIVDLLGRVGL---LEGAKMTIDQMP----IPPD------AHIWQSLLSACTIYGNIDLGL 667 (760)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----~~p~------~~~~~~l~~~~~~~~~~~~A~ 667 (760)
.|+.+.+ ..+.+...+..+..++...|+ +++|...++++. ..|+ ..+|..+...+...|++++|.
T Consensus 164 ~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 164 SFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7777766 122235556666666666666 666666665551 1233 256777888889999999999
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHHhcCC
Q 041183 668 LAGSKLLELQPDNESTYVLLSNLYASAGM 696 (760)
Q Consensus 668 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 696 (760)
..++++++++|+++.+...+..+....+.
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC--------
T ss_pred HHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 99999999999999888888777665543
No 40
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.57 E-value=2.8e-15 Score=161.73 Aligned_cols=110 Identities=13% Similarity=0.158 Sum_probs=55.3
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHH---cCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChHhHHHHH
Q 041183 479 STFSIVLKACAAMTDLEQGKAIHCLALK---ARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC----RDSLAGWNAMM 551 (760)
Q Consensus 479 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~ 551 (760)
.||+++|++||+.|++++|.++|.+|.+ .|+.||..+||+||++||+.|++++|.++|++|. .||+.|||++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3555555555555555555555544432 3445555555555555555555555555555442 44555555555
Q ss_pred HHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041183 552 MGYAQHGCY-HEVSNLFNKMSKFGVKPDEITYLAVLTS 588 (760)
Q Consensus 552 ~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 588 (760)
.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~ 245 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccCh
Confidence 555554442 3444555555555555555555544433
No 41
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.57 E-value=1.2e-15 Score=164.56 Aligned_cols=148 Identities=12% Similarity=0.146 Sum_probs=120.6
Q ss_pred CchhHhHHHHhhhcCCChHHHHHHHhcC-------CCCCeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHH
Q 041183 310 VVSIGNALISMYGKCGQVNDARSIFDYL-------IFKDSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMAS 382 (760)
Q Consensus 310 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 382 (760)
-..+||+||++|++.|++++|.++|+.| ..||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 3457899999999999999999999665 478999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcCC-HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC-----CcccHHHHHHHHHhc
Q 041183 383 ILEAVSNSKS-LKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKK-----NAVHINALASVLVYA 456 (760)
Q Consensus 383 ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~ 456 (760)
+|.++|+.|+ .+.|.+++++|.+.|+.||..+|++++....+.+-++.+.++...+..+ ...+...|...|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 9999999997 5789999999999999999999999988777665555444443333321 123344455556554
Q ss_pred C
Q 041183 457 S 457 (760)
Q Consensus 457 ~ 457 (760)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 4
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.54 E-value=6.9e-13 Score=129.71 Aligned_cols=227 Identities=7% Similarity=-0.079 Sum_probs=188.4
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChH----hHHHHHH
Q 041183 479 STFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICR--DSLA----GWNAMMM 552 (760)
Q Consensus 479 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~----~~~~l~~ 552 (760)
..+......+...|+++.|...++.+.+.. +.+...+..+...|...|++++|...+++... ++.. .|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345556678889999999999999999876 34566888999999999999999999998743 2322 4889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCCh
Q 041183 553 GYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLL 631 (760)
Q Consensus 553 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 631 (760)
.+...|++++|+..|++..+ ..| +...+..+...+...|++++|...++++.+ ..+.+...+..+...+...+++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVD--RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcccHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 455 457888899999999999999999999987 2334567777787344445699
Q ss_pred HHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhccC---CCC-----chhHHHHHHHHHhcCChh
Q 041183 632 EGAKMTIDQMP--IPPDAHIWQSLLSACTIYGN---IDLGLLAGSKLLELQ---PDN-----ESTYVLLSNLYASAGMWN 698 (760)
Q Consensus 632 ~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~ 698 (760)
++|.+.++++. .+.+...+..+...+...|+ +++|...+++++++. |+. ..++..++.+|...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 99999999883 34557888888899988888 889999999999975 532 268889999999999999
Q ss_pred HHHHHHHHHHhC
Q 041183 699 DVGKLRKEMKEK 710 (760)
Q Consensus 699 ~A~~~~~~~~~~ 710 (760)
+|+.++++..+.
T Consensus 239 ~A~~~~~~al~~ 250 (272)
T 3u4t_A 239 KADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999999876
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.54 E-value=2.3e-13 Score=127.60 Aligned_cols=187 Identities=16% Similarity=0.116 Sum_probs=162.1
Q ss_pred CChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHH
Q 041183 542 DSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYAC 620 (760)
Q Consensus 542 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 620 (760)
++...+..+...+.+.|++++|+..|++..+ ..| +...+..+..++.+.|++++|...++++.+ -.+.+...+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~ 78 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALK--ENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMV 78 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHH
Confidence 4666788899999999999999999999998 567 557788888999999999999999999998 23335788999
Q ss_pred HHHHhhhc-----------CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHH
Q 041183 621 IVDLLGRV-----------GLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLL 687 (760)
Q Consensus 621 l~~~~~~~-----------g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 687 (760)
+..++... |++++|+..+++.. .+.+...|..+...+...|++++|+..++++++++ +++.++..+
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~l 157 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHH
Confidence 99999999 99999999999883 44568899999999999999999999999999999 899999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHhhhc
Q 041183 688 SNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYKELIKLYEHMVATAK 759 (760)
Q Consensus 688 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (760)
+.+|...|++++|+..+++..+. +|+..+.+..++.++.+.|+.++
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~--------------------------~P~~~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQ--------------------------APKDLDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHTC------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCChHHHHHHHHHHHHccCHHH
Confidence 99999999999999999999876 78888999999999988887754
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.54 E-value=5.3e-13 Score=135.50 Aligned_cols=243 Identities=10% Similarity=0.035 Sum_probs=191.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCC-HHHHHHHHHhcC---CCChHhHHHHHHHHH
Q 041183 480 TFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGT-IEDAKRAFRKIC---RDSLAGWNAMMMGYA 555 (760)
Q Consensus 480 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 555 (760)
.|..+...+...|+++.|...++++++.. +-+..+|..+..++...|+ +++|+..|+++. ..+...|..+..++.
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 45555556666677777777777777655 3456777778888888886 888888888764 446668888888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhh-cCChHH
Q 041183 556 QHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGR-VGLLEG 633 (760)
Q Consensus 556 ~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 633 (760)
..|++++|+..|+++.+ +.| +...|..+..++...|++++|+..++++.+ -.+-+...|..+..++.+ .|..++
T Consensus 178 ~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 178 WLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcchH
Confidence 89999999999999988 567 557788888888899999999999999988 233357888888888888 666577
Q ss_pred H-----HHHHHhC-C-CCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcC---------
Q 041183 634 A-----KMTIDQM-P-IPPDAHIWQSLLSACTIYG--NIDLGLLAGSKLLELQPDNESTYVLLSNLYASAG--------- 695 (760)
Q Consensus 634 A-----~~~~~~~-~-~~p~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------- 695 (760)
| ++.++++ . .+.+...|..+...+...| ++++|++.++++ +..|+++.++..++.+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 4667666 2 3456788999999988888 689999999998 899999999999999999985
Q ss_pred ChhHHHHHHHHH-HhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHHHHHHHHHHH
Q 041183 696 MWNDVGKLRKEM-KEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYKELIKLYEHM 754 (760)
Q Consensus 696 ~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (760)
.+++|+++++++ .+. +|...+.+..+++.+..+
T Consensus 333 ~~~~A~~~~~~l~~~~--------------------------DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 333 ILNKALELCEILAKEK--------------------------DTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHTT--------------------------CGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--------------------------CchhHHHHHHHHHHHHHH
Confidence 358999999998 655 688888888887777655
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=1.6e-13 Score=131.68 Aligned_cols=195 Identities=10% Similarity=0.059 Sum_probs=120.5
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 041183 512 DIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLT 587 (760)
Q Consensus 512 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~ 587 (760)
....+..+...+...|++++|...|+++. +.+...+..+...+...|++++|+..++++.+. .| +...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHHH
Confidence 34445555556666666666666666553 224456666666677777777777777776663 33 4456666666
Q ss_pred HHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhH
Q 041183 588 SCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDL 665 (760)
Q Consensus 588 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~ 665 (760)
.+...|++++|...++.+.+ ..+.+...+..++..+.+.|++++|.++++++. .+.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALR--AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 77777777777777777766 123355666677777777777777777777662 34456677777777777777777
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 666 GLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 666 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
|+..++++++..|+++.++..++.+|...|++++|...++++.+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 777777777777777777777777777778888787777777654
No 46
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.53 E-value=1.1e-12 Score=137.81 Aligned_cols=373 Identities=7% Similarity=-0.056 Sum_probs=196.0
Q ss_pred HHhhcCCCcchHHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCCh---HHHHHHHhcCCCCCeeeHHHHHHHHHhcC---
Q 041183 283 LSSVGGERILRAGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQV---NDARSIFDYLIFKDSVSWNSMIAGYSENG--- 356 (760)
Q Consensus 283 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g--- 356 (760)
...+.+.|++++|.+.+....+.| ++..+..|...+...|+. ++|...|++..+.+...+..+...+...+
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Confidence 334455677888888888777765 333444555556666666 77888887776556666666666455444
Q ss_pred --CccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCH---HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh---
Q 041183 357 --FFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSL---KQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNAL--- 428 (760)
Q Consensus 357 --~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--- 428 (760)
++++|+..|++..+.|... .+..+...|...+.. ..+.+.+......| ++.....|...|...+.+
T Consensus 87 ~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGG
T ss_pred CcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccC
Confidence 5667777777777654322 344444444433322 22333333333333 233334444444444422
Q ss_pred -HHHHHHHhhcCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccC---CHHHHHHHHHHH
Q 041183 429 -NESKRVLSEIDKKNAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMT---DLEQGKAIHCLA 504 (760)
Q Consensus 429 -~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~ 504 (760)
+.+..++......++. .+..+...+...| +.++|..+|++.
T Consensus 161 ~~~a~~~~~~a~~~~~~-----------------------------------a~~~Lg~~~~~~g~~~~~~~A~~~~~~a 205 (452)
T 3e4b_A 161 LDDVERICKAALNTTDI-----------------------------------CYVELATVYQKKQQPEQQAELLKQMEAG 205 (452)
T ss_dssp HHHHHHHHHHHTTTCTT-----------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHH-----------------------------------HHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 2233333333333333 4444444554555 555555555555
Q ss_pred HHcCCCCCchHHHHHHHHHHhc----CCHHHHHHHHHhcCCCChHhHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCC
Q 041183 505 LKARYDQDIFVESAVIDMYCKC----GTIEDAKRAFRKICRDSLAGWNAMMMG-Y--AQHGCYHEVSNLFNKMSKFGVKP 577 (760)
Q Consensus 505 ~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~g~~p 577 (760)
.+.| +++...+..+...|... +++++|..+|++....+...+..+... + ...+++++|+..|++..+.|
T Consensus 206 a~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--- 281 (452)
T 3e4b_A 206 VSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--- 281 (452)
T ss_dssp HHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---
T ss_pred HHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---
Confidence 5555 23344334455555443 566677777766652244455555555 3 35678888888888877765
Q ss_pred CHHHHHHHHHHHhccC-----cHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhh----cCChHHHHHHHHhCCCCCCHH
Q 041183 578 DEITYLAVLTSCCHAG-----LVREARTYLSCMSDLHGLIPQLEHYACIVDLLGR----VGLLEGAKMTIDQMPIPPDAH 648 (760)
Q Consensus 578 ~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~ 648 (760)
+...+..|...|. .| ++++|...|+... +-++..+..|...|.. ..++++|..+|++.-..-++.
T Consensus 282 ~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~ 355 (452)
T 3e4b_A 282 QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNS 355 (452)
T ss_dssp CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTT
T ss_pred CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHH
Confidence 4455555555555 44 7888888887664 3355666667766655 337888888888773334455
Q ss_pred HHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 649 IWQSLLSACTI----YGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 649 ~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
....|...|.. ..|.++|...++++.+.++.+.......+......++..+|..+.++..+
T Consensus 356 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 356 ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 56666666653 45888999999998887753333333332222334566778888777665
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.52 E-value=5.2e-12 Score=123.46 Aligned_cols=214 Identities=13% Similarity=-0.018 Sum_probs=116.5
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh----cCCHHHHHHHHHhcC-CCChHhHHHHHHHHHH----
Q 041183 486 KACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCK----CGTIEDAKRAFRKIC-RDSLAGWNAMMMGYAQ---- 556 (760)
Q Consensus 486 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~---- 556 (760)
..+...|++++|...+++..+. .+...+..+...|.. .+++++|...|++.. ..+...+..+...|..
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~ 90 (273)
T 1ouv_A 14 AKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGV 90 (273)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCc
Confidence 3333344444444444444331 122334444444444 445555554444432 1233444555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhh----c
Q 041183 557 HGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCH----AGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGR----V 628 (760)
Q Consensus 557 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 628 (760)
.+++++|+..|++..+.+ +...+..+...+.. .+++++|...|+...+ .+ +...+..+...|.. .
T Consensus 91 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~ 163 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTP 163 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSC
T ss_pred ccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCC
Confidence 556666666666555543 44455555555555 5666666666666655 22 34445555555555 5
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCchhHHHHHHHHHh----cCChhHH
Q 041183 629 GLLEGAKMTIDQMPIPPDAHIWQSLLSACTI----YGNIDLGLLAGSKLLELQPDNESTYVLLSNLYAS----AGMWNDV 700 (760)
Q Consensus 629 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A 700 (760)
+++++|...+++.....++..+..+...+.. .+++++|+..++++.+.+| +.++..++.+|.. .|++++|
T Consensus 164 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A 241 (273)
T 1ouv_A 164 KDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQA 241 (273)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHH
Confidence 6666666666655222345556666666666 6677777777777766654 5666667777776 6777777
Q ss_pred HHHHHHHHhCC
Q 041183 701 GKLRKEMKEKF 711 (760)
Q Consensus 701 ~~~~~~~~~~~ 711 (760)
..++++..+.+
T Consensus 242 ~~~~~~a~~~~ 252 (273)
T 1ouv_A 242 IENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHcC
Confidence 77777665544
No 48
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.52 E-value=2e-12 Score=135.89 Aligned_cols=341 Identities=10% Similarity=-0.039 Sum_probs=210.2
Q ss_pred HHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCH---HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 041183 349 IAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSL---KQAMQVHSHIIKSGFLLDDSMISCLITTYGKC 425 (760)
Q Consensus 349 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 425 (760)
...+.+.|++++|.+.|++..+.|. ...+..+...+...|+. ++|...|+...+. ++..+..|...+...
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 3344455555555555555554431 11222222333334444 5555555555433 333334444433333
Q ss_pred C-----ChHHHHHHHhhcCCC-CcccHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHH
Q 041183 426 N-----ALNESKRVLSEIDKK-NAVHINALASVLVYASCHA---EALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQ 496 (760)
Q Consensus 426 ~-----~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~---~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 496 (760)
+ ++++|...|++..++ ++..+..+...|...+... ++.+.+......| +......+...+...+.++.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 3 455566655554433 3445556666665554432 3455555554444 23455556666666665544
Q ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHhcC---CHHHHHHHHHhcC---CCChHhHHHHHHHHHHc----CCHHHHHHH
Q 041183 497 GKAIHCLALKARYDQDIFVESAVIDMYCKCG---TIEDAKRAFRKIC---RDSLAGWNAMMMGYAQH----GCYHEVSNL 566 (760)
Q Consensus 497 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~----~~~~~a~~~ 566 (760)
+......+.+.....++..+..|...|...| +.++|...|++.. .++...+..+...|... +++++|+..
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 4444333333222344458889999999999 9999999998774 33344446777777655 799999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHH-H--hccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcC-----ChHHHHHHH
Q 041183 567 FNKMSKFGVKPDEITYLAVLTS-C--CHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVG-----LLEGAKMTI 638 (760)
Q Consensus 567 ~~~m~~~g~~p~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~ 638 (760)
|++.. .| +...+..|... + ...+++++|...|++..+ .| +...+..|...|. .| ++++|.++|
T Consensus 240 ~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 240 LEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 99987 33 33444555544 3 568999999999999987 44 6677778888887 55 999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCchhHHHHHHHHHh----cCChhHHHHHHHHHHhC
Q 041183 639 DQMPIPPDAHIWQSLLSACTI----YGNIDLGLLAGSKLLELQPDNESTYVLLSNLYAS----AGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 639 ~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 710 (760)
++.- +.++..+..|...|.. ..|+++|...++++.+. .++.+...|+.+|.. ..+.++|..++++..+.
T Consensus 311 ~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 311 EKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 9998 7788889888887776 34999999999999874 468889999999985 56899999999998877
Q ss_pred C
Q 041183 711 F 711 (760)
Q Consensus 711 ~ 711 (760)
|
T Consensus 388 g 388 (452)
T 3e4b_A 388 D 388 (452)
T ss_dssp C
T ss_pred C
Confidence 6
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.51 E-value=5e-13 Score=128.18 Aligned_cols=212 Identities=15% Similarity=0.087 Sum_probs=150.0
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHH
Q 041183 479 STFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYA 555 (760)
Q Consensus 479 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 555 (760)
..+..+...+...|+++.|...++++.+.. +.+...+..+...+...|++++|...++++. +.+...+..+...+.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 344455555566666666666666666543 2356666667777777777777777777653 345567778888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHH
Q 041183 556 QHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGA 634 (760)
Q Consensus 556 ~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 634 (760)
..|++++|.+.++++.+. .| +...+..+...+...|++++|...++.+.+ ..+.+...+..++..+.+.|++++|
T Consensus 103 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE--LNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHcCCHHHH
Confidence 888999999999888874 34 567777788888999999999999999887 2344677888899999999999999
Q ss_pred HHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcC
Q 041183 635 KMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAG 695 (760)
Q Consensus 635 ~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 695 (760)
.+.++++. .+.+..++..+...+...|++++|...+++++++.|+++.++..++.+....|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 99998872 45568889999999999999999999999999999999998888776655444
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.50 E-value=2.1e-12 Score=124.59 Aligned_cols=194 Identities=11% Similarity=-0.059 Sum_probs=133.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 041183 514 FVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSC 589 (760)
Q Consensus 514 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~ 589 (760)
..+..+...+...|++++|...|+++. +.+...+..+...+...|++++|.+.++++.+. .| +...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHH
Confidence 344555555566666666666665542 234455666666677777777777777776663 34 445666666777
Q ss_pred hccCcHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHH
Q 041183 590 CHAGLVREARTYLSCMSDLHGLIP-QLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLG 666 (760)
Q Consensus 590 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A 666 (760)
...|++++|..+++.+.+ .+..| +...+..++.++...|++++|.+.++++. .+.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777765 33334 34566667777777777777777777662 334567777777888888888888
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 667 LLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 667 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
...++++++..|++...+..++.++...|++++|..+++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888888888878888888888888888888888888887765
No 51
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.50 E-value=1.2e-12 Score=119.29 Aligned_cols=164 Identities=16% Similarity=0.108 Sum_probs=139.7
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHH
Q 041183 543 SLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACI 621 (760)
Q Consensus 543 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 621 (760)
+...|..+...|.+.|++++|++.|++..+ +.| +...+..+..++.+.|++++|...+..+.. ..+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHH
Confidence 456788888888888999999999998888 566 457778888888899999999999888877 234456777778
Q ss_pred HHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhH
Q 041183 622 VDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWND 699 (760)
Q Consensus 622 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 699 (760)
...+...++++.|.+.+.+.. .+.+...+..+...+...|++++|++.++++++++|+++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 888888999999999888773 455678889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 041183 700 VGKLRKEMKEK 710 (760)
Q Consensus 700 A~~~~~~~~~~ 710 (760)
|+..|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999998765
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.50 E-value=2.5e-12 Score=121.48 Aligned_cols=195 Identities=10% Similarity=0.015 Sum_probs=139.9
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 041183 513 IFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTS 588 (760)
Q Consensus 513 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~ 588 (760)
...+..+...+...|++++|...|+.+. +.+...|..+...+...|++++|.+.++++.+. .| +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHHHH
Confidence 4455556666666666666666666542 334556666777777777777777777777763 34 45666667777
Q ss_pred Hhcc-CcHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChh
Q 041183 589 CCHA-GLVREARTYLSCMSDLHGLIPQ-LEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNID 664 (760)
Q Consensus 589 ~~~~-g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~ 664 (760)
+... |++++|...++.+.+ .+..|+ ...+..++.++...|++++|.+.++++. .+.+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 7777 888888888877776 333333 5667777777788888888888777762 3445777788888888888888
Q ss_pred HHHHHHHHHhccCC-CCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 665 LGLLAGSKLLELQP-DNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 665 ~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
+|...++++++..| +++..+..++.++...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888888888888 88888888888888888888888888887654
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.50 E-value=1.7e-12 Score=131.74 Aligned_cols=244 Identities=10% Similarity=0.034 Sum_probs=196.7
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCCchHHHHHHHH
Q 041183 444 VHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTD-LEQGKAIHCLALKARYDQDIFVESAVIDM 522 (760)
Q Consensus 444 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 522 (760)
..|..+...+...|++++|+..+++..... +-+...|..+..++...|+ ++.|...++++++.. +.+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 346667777778888888888888887753 2245677788888888886 999999999988876 3568888899999
Q ss_pred HHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc-cCcHHH
Q 041183 523 YCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCH-AGLVRE 597 (760)
Q Consensus 523 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~-~g~~~~ 597 (760)
+...|++++|+..|+++. ..+...|..+..++.+.|++++|+..|+++.+ +.| +...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcchH
Confidence 999999999999998774 45677899999999999999999999999998 567 45788888888888 666577
Q ss_pred H-----HHHHHHhhhhcCCCC-ChhHHHHHHHHhhhcC--ChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcC-------
Q 041183 598 A-----RTYLSCMSDLHGLIP-QLEHYACIVDLLGRVG--LLEGAKMTIDQMP-IPPDAHIWQSLLSACTIYG------- 661 (760)
Q Consensus 598 A-----~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~------- 661 (760)
| +..++.+.+ +.| +...|..+..++...| ++++|.+.+.++. .+.+...+..++..+.+.|
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 7 588888877 445 5678888999998888 6899999988875 3445778888998888764
Q ss_pred --ChhHHHHHHHHH-hccCCCCchhHHHHHHHHHhc
Q 041183 662 --NIDLGLLAGSKL-LELQPDNESTYVLLSNLYASA 694 (760)
Q Consensus 662 --~~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 694 (760)
..++|+.+++++ .+++|.....|..++..+..+
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 258999999999 999999999999888776654
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.50 E-value=5e-12 Score=121.93 Aligned_cols=204 Identities=14% Similarity=0.023 Sum_probs=147.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHH
Q 041183 480 TFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQ 556 (760)
Q Consensus 480 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 556 (760)
.+..+...+...|+++.|...++++.+.. +.+...+..+...|...|++++|.+.++++. +.+...+..+...+..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH
Confidence 34444445555555555555555555543 2345566666666666777777777666552 3355567777778888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHH
Q 041183 557 HGCYHEVSNLFNKMSKFGVKPD-EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAK 635 (760)
Q Consensus 557 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 635 (760)
.|++++|.+.++++.+.+..|+ ...+..+...+...|++++|...++.+.+. .+.+...+..++..+...|++++|.
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888877434553 466777778888889999999988888772 3345777888888899999999999
Q ss_pred HHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHH
Q 041183 636 MTIDQM-P-IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVL 686 (760)
Q Consensus 636 ~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 686 (760)
..++++ . .+.+...+..+...+...|++++|...++++.+..|+++.....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 988887 2 44567788888888999999999999999999999987766543
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=3.6e-13 Score=140.49 Aligned_cols=291 Identities=12% Similarity=0.037 Sum_probs=190.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---hhHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC-CCchHHHH
Q 041183 447 NALASVLVYASCHAEALELYRTIWGSCREVN---GSTFSIVLKACAAMTDLEQGKAIHCLALKA----RYD-QDIFVESA 518 (760)
Q Consensus 447 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 518 (760)
......+...|++++|...|++..+.+.... ...+..+...+...|+++.|...++++.+. +.. ....++..
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3344455555666666666665555421110 134555556666666666666666655442 111 12445566
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CC----hHhHHHHHHHHHHcCC--------------------HHHHHHHHHH
Q 041183 519 VIDMYCKCGTIEDAKRAFRKICR-----DS----LAGWNAMMMGYAQHGC--------------------YHEVSNLFNK 569 (760)
Q Consensus 519 l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~ 569 (760)
+...|...|++++|...+++... ++ ..++..+...+...|+ +++|...+++
T Consensus 93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 66777777777777777765521 12 2356777777777787 8888887776
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHhhhcCChHHHHHHHHh
Q 041183 570 MSKF----GVKPD-EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQ----LEHYACIVDLLGRVGLLEGAKMTIDQ 640 (760)
Q Consensus 570 m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 640 (760)
..+. +..|. ..++..+...+...|++++|...++++.+...-.++ ...+..++..|...|++++|...+++
T Consensus 173 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (406)
T 3sf4_A 173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 6542 11221 245677777888888999988888887752111122 24778888888889999999888887
Q ss_pred CC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------chhHHHHHHHHHhcCChhHHHHHHHH
Q 041183 641 MP----IPPD----AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDN------ESTYVLLSNLYASAGMWNDVGKLRKE 706 (760)
Q Consensus 641 ~~----~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 706 (760)
.. ..++ ..++..+...+...|++++|...+++++++.|.. ..++..++.+|...|++++|..++++
T Consensus 253 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 61 1112 4567788888899999999999999998865432 66888999999999999999999998
Q ss_pred HHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHhh
Q 041183 707 MKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYKELIKLYEHMVAT 757 (760)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 757 (760)
..+.... ....|.....+..++++|..+|+.
T Consensus 333 al~~~~~--------------------~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 333 HLEISRE--------------------VGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHH--------------------TTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH--------------------hcCCcchhHHHHHHHHHHHHhhHh
Confidence 7653110 012456677888888888888876
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=1.2e-11 Score=120.84 Aligned_cols=226 Identities=9% Similarity=-0.032 Sum_probs=176.7
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCCchHHH
Q 041183 442 NAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAA----MTDLEQGKAIHCLALKARYDQDIFVES 517 (760)
Q Consensus 442 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 517 (760)
++.++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...+++..+.+ ++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3445556666677777777777777777662 244566667777777 888888888888887765 567777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhcC-CCChHhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041183 518 AVIDMYCK----CGTIEDAKRAFRKIC-RDSLAGWNAMMMGYAQ----HGCYHEVSNLFNKMSKFGVKPDEITYLAVLTS 588 (760)
Q Consensus 518 ~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 588 (760)
.+...|.. .+++++|...|++.. ..+...+..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 88888888 888888888888764 3356678888888888 899999999999998865 45566667777
Q ss_pred Hhc----cCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 041183 589 CCH----AGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGR----VGLLEGAKMTIDQMPIPPDAHIWQSLLSACTI- 659 (760)
Q Consensus 589 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~- 659 (760)
+.. .+++++|...|+...+ . .+...+..+..+|.. .+++++|.+.+++.....+...+..+...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACD-L---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 777 8999999999999887 2 245777888889988 99999999999887322337788888889988
Q ss_pred ---cCChhHHHHHHHHHhccCCCC
Q 041183 660 ---YGNIDLGLLAGSKLLELQPDN 680 (760)
Q Consensus 660 ---~~~~~~A~~~~~~~~~~~p~~ 680 (760)
.+++++|...++++.+++|++
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHH
Confidence 899999999999999999843
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.47 E-value=1e-11 Score=117.24 Aligned_cols=206 Identities=16% Similarity=0.039 Sum_probs=156.1
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHH
Q 041183 479 STFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYA 555 (760)
Q Consensus 479 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 555 (760)
..+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...++++. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 345555566666666666666666666644 2345666777777777777777777777653 345567778888888
Q ss_pred Hc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHH
Q 041183 556 QH-GCYHEVSNLFNKMSKFGVKPD-EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEG 633 (760)
Q Consensus 556 ~~-~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 633 (760)
.. |++++|...++++.+.+..|+ ...+..+...+...|++++|...++.+.+ ..+.+...+..++.++.+.|++++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA--AQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHcCCHHH
Confidence 88 899999999988887434454 46677788888999999999999999887 233457788889999999999999
Q ss_pred HHHHHHhCC--CC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHH
Q 041183 634 AKMTIDQMP--IP-PDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLL 687 (760)
Q Consensus 634 A~~~~~~~~--~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 687 (760)
|.++++++. .+ .+...+..+...+...|+.+.|...++.+.+..|+++.....+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 999998872 34 5677787778888899999999999999999999887766544
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=9.5e-13 Score=139.25 Aligned_cols=208 Identities=8% Similarity=-0.024 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCH-HHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHH
Q 041183 494 LEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTI-EDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNK 569 (760)
Q Consensus 494 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 569 (760)
++.+...++...... +.+...+..+...+...|++ ++|...|++.. +.+...|..+..+|.+.|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444443322 34566777777777777787 88877777653 34566788888899999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhc--------CChH
Q 041183 570 MSKFGVKPDEITYLAVLTSCCHA---------GLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRV--------GLLE 632 (760)
Q Consensus 570 m~~~g~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 632 (760)
..+ ..|+...+..+...+... |++++|...++++.+ -.+.+...|..+..+|... |+++
T Consensus 163 al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 988 568878888888889998 999999999999988 2344578889999999988 9999
Q ss_pred HHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHH
Q 041183 633 GAKMTIDQMP-IPP----DAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKE 706 (760)
Q Consensus 633 ~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 706 (760)
+|++.|+++. ..| +...|..+...+...|++++|++.++++++++|+++.++..++.++...|++++|+..+++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999883 344 7889999999999999999999999999999999999999999999999999999976544
No 59
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.44 E-value=3.7e-12 Score=124.69 Aligned_cols=217 Identities=15% Similarity=0.015 Sum_probs=180.3
Q ss_pred HhccCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHH
Q 041183 488 CAAMTDLEQGKAIHCLALKARY---DQDIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYH 561 (760)
Q Consensus 488 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 561 (760)
....|+++.|...++.+.+... +.+..++..+...+...|++++|...|+++. +.+...|..+...+...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 3456889999999999998642 1246788889999999999999999999874 456789999999999999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHh
Q 041183 562 EVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQ 640 (760)
Q Consensus 562 ~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 640 (760)
+|...|+++.+ ..| +...+..+...+...|++++|...++.+.+ ..|+......+...+...|++++|...+++
T Consensus 95 ~A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 95 AAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999998 455 567888899999999999999999999988 445554555555666788999999999976
Q ss_pred C-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC----CchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 641 M-P-IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPD----NESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 641 ~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
. . .+++...+. ++..+...++.++|...++++++..|. ++.++..++.+|...|++++|...+++..+.
T Consensus 170 ~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 170 HFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 6 2 344444444 667778888999999999999997763 3789999999999999999999999999865
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.44 E-value=7.6e-13 Score=138.29 Aligned_cols=260 Identities=11% Similarity=0.026 Sum_probs=174.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHHHHcC-----CCCCchHHHHH
Q 041183 449 LASVLVYASCHAEALELYRTIWGSCREVNG----STFSIVLKACAAMTDLEQGKAIHCLALKAR-----YDQDIFVESAV 519 (760)
Q Consensus 449 l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l 519 (760)
+...+...|++++|+..|++..+.... +. ..+..+...+...|+++.|...+++..+.. .+.....+..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 344455556666666666655554221 11 245555566666666666666666655421 11224556666
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---------CChHhHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHC
Q 041183 520 IDMYCKCGTIEDAKRAFRKICR---------DSLAGWNAMMMGYAQHGC-----------------YHEVSNLFNKMSKF 573 (760)
Q Consensus 520 ~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~m~~~ 573 (760)
...|...|++++|...+++... ....++..+...|...|+ +++|++.+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 7777777777777777765421 112356777777778888 88888877776542
Q ss_pred ----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhCC--
Q 041183 574 ----GVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQ----LEHYACIVDLLGRVGLLEGAKMTIDQMP-- 642 (760)
Q Consensus 574 ----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 642 (760)
+-.| ....+..+...+...|++++|...+++..+...-.++ ...+..++.+|...|++++|...++++.
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1112 2246677778888899999999888888762111112 2367888888999999999998888762
Q ss_pred --CCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC------CchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 643 --IPP----DAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPD------NESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 643 --~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
... ...++..+...+...|++++|...+++++++.+. ...++..++.+|...|++++|..++++..+
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111 2457788888899999999999999999986543 245888999999999999999999998765
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.42 E-value=5.5e-12 Score=127.48 Aligned_cols=262 Identities=12% Similarity=0.055 Sum_probs=181.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCC---hhHHHHHHHHHhccCCHHHHHHHHHHHHHc----CC-CCCchHHHHHH
Q 041183 449 LASVLVYASCHAEALELYRTIWGSCREVN---GSTFSIVLKACAAMTDLEQGKAIHCLALKA----RY-DQDIFVESAVI 520 (760)
Q Consensus 449 l~~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~ 520 (760)
....+...|++++|...|+++.+...... ...+..+...+...|+++.|...+++..+. +. +....++..+.
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 34455566666666666666655432111 234556666666777777777776665442 11 11245666777
Q ss_pred HHHHhcCCHHHHHHHHHhcC-----CCC----hHhHHHHHHHHHHcCC--------------------HHHHHHHHHHHH
Q 041183 521 DMYCKCGTIEDAKRAFRKIC-----RDS----LAGWNAMMMGYAQHGC--------------------YHEVSNLFNKMS 571 (760)
Q Consensus 521 ~~~~~~~~~~~A~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~m~ 571 (760)
..|...|++++|...+++.. .++ ..++..+...+...|+ +++|...+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 77778888888887776652 122 2267777778888888 888888887765
Q ss_pred HC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhCC
Q 041183 572 KF----GVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQ----LEHYACIVDLLGRVGLLEGAKMTIDQMP 642 (760)
Q Consensus 572 ~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 642 (760)
+. +..| ....+..+...+...|++++|...++.+.+.....++ ...+..++..+...|++++|.+.+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 1112 1346777778888999999999999888752111112 3477888899999999999999988762
Q ss_pred ----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------chhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041183 643 ----IPPD----AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDN------ESTYVLLSNLYASAGMWNDVGKLRKEMK 708 (760)
Q Consensus 643 ----~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (760)
..++ ..++..+...+...|++++|...+++++++.|.. ..++..++.+|...|++++|..++++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 1122 5577888889999999999999999999875432 4588899999999999999999999987
Q ss_pred hC
Q 041183 709 EK 710 (760)
Q Consensus 709 ~~ 710 (760)
+.
T Consensus 331 ~~ 332 (338)
T 3ro2_A 331 EI 332 (338)
T ss_dssp HC
T ss_pred HH
Confidence 64
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.40 E-value=6.5e-12 Score=132.82 Aligned_cols=199 Identities=12% Similarity=0.023 Sum_probs=175.1
Q ss_pred HHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHH
Q 041183 529 IEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCY-HEVSNLFNKMSKFGVKPD-EITYLAVLTSCCHAGLVREARTYLS 603 (760)
Q Consensus 529 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 603 (760)
++++...++... ..+...|..+...+...|++ ++|++.|++..+ ..|+ ...+..+..++...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666666553 34667899999999999999 999999999998 5674 6889999999999999999999999
Q ss_pred HhhhhcCCCCChhHHHHHHHHhhhc---------CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc--------CChh
Q 041183 604 CMSDLHGLIPQLEHYACIVDLLGRV---------GLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIY--------GNID 664 (760)
Q Consensus 604 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~--------~~~~ 664 (760)
.+.+ ..|+...+..+..+|... |++++|++.++++- .+.+...|..+..++... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9988 567788999999999999 99999999999882 455688999999999998 9999
Q ss_pred HHHHHHHHHhccCC---CCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChH
Q 041183 665 LGLLAGSKLLELQP---DNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSK 741 (760)
Q Consensus 665 ~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (760)
+|+..++++++++| +++.++..++.+|...|++++|+..|++..+. +|+..
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------------------------~p~~~ 292 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--------------------------DPAWP 292 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CTTCH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCCH
Confidence 99999999999999 99999999999999999999999999998876 67778
Q ss_pred HHHHHHHHHHHHHHhhh
Q 041183 742 EIYKELIKLYEHMVATA 758 (760)
Q Consensus 742 ~~~~~~~~~~~~~~~~~ 758 (760)
+.+..+++++..+++.+
T Consensus 293 ~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 293 EPQQREQQLLEFLSRLT 309 (474)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888887754
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=1.9e-12 Score=134.89 Aligned_cols=298 Identities=13% Similarity=0.036 Sum_probs=190.3
Q ss_pred CCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHH
Q 041183 375 PNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLD---DSMISCLITTYGKCNALNESKRVLSEIDKKNAVHINALAS 451 (760)
Q Consensus 375 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~ 451 (760)
+....+......+...|++++|...++.+.+.+.... ..++..+...+...|++++|...+++...
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----------- 75 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT----------- 75 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----------
Confidence 3444555666677777888888888877777632211 23555666666666776666666654321
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CC----chHHHHHHHHHHh
Q 041183 452 VLVYASCHAEALELYRTIWGSCREV-NGSTFSIVLKACAAMTDLEQGKAIHCLALKARYD-QD----IFVESAVIDMYCK 525 (760)
Q Consensus 452 ~~~~~~~~~~A~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~ 525 (760)
+... .+..| ...++..+...+...|+++.|...+++..+.... ++ ..++..+...|..
T Consensus 76 -------------~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (406)
T 3sf4_A 76 -------------LART---IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 139 (406)
T ss_dssp -------------HHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHh---ccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 0000 01011 1223444444555555555555555554432100 11 3355566666666
Q ss_pred cCC--------------------HHHHHHHHHhcC-----CCC----hHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-
Q 041183 526 CGT--------------------IEDAKRAFRKIC-----RDS----LAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGV- 575 (760)
Q Consensus 526 ~~~--------------------~~~A~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~- 575 (760)
.|+ +++|...+.+.. ..+ ..++..+...+...|++++|...+++..+...
T Consensus 140 ~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 676 666666665542 111 23577788888888899998888888765210
Q ss_pred CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhCC----C
Q 041183 576 KPD----EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQ----LEHYACIVDLLGRVGLLEGAKMTIDQMP----I 643 (760)
Q Consensus 576 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~ 643 (760)
.++ ..++..+...+...|++++|...++...+...-.++ ..++..++..|...|++++|.+.+++.. .
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 112 236777788888999999999999887752111111 5677888999999999999999988762 1
Q ss_pred CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccC------CCCchhHHHHHHHHHhcCChhH
Q 041183 644 PPD----AHIWQSLLSACTIYGNIDLGLLAGSKLLELQ------PDNESTYVLLSNLYASAGMWND 699 (760)
Q Consensus 644 ~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~ 699 (760)
.++ ..++..+...+...|++++|...+++++++. |....++..++.++...|+...
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 222 5577888899999999999999999999863 3346788899999999988743
No 64
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.36 E-value=2e-11 Score=115.52 Aligned_cols=204 Identities=12% Similarity=-0.014 Sum_probs=115.3
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHhcC---C-CChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 041183 512 DIFVESAVIDMYCKCGTIEDAKRAFRKIC---R-DSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDE-ITYLAVL 586 (760)
Q Consensus 512 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~ 586 (760)
++..+......+...|++++|...|++.. + ++...+..+..++...|++++|+..|++..+ ..|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 44556666666666666666666666542 2 4455555566666666666666666666665 34533 4555555
Q ss_pred HHHhccCcHHHHHHHHHHhhhhcCCCC-Ch-------hHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC---HHHHHHHH
Q 041183 587 TSCCHAGLVREARTYLSCMSDLHGLIP-QL-------EHYACIVDLLGRVGLLEGAKMTIDQM-PIPPD---AHIWQSLL 654 (760)
Q Consensus 587 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~ 654 (760)
..+...|++++|...++.+.+ ..| +. ..|..+...+...|++++|++.++++ ...|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIK---AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 666666666666666666665 222 22 33555555555555666665555554 23333 33444444
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCC
Q 041183 655 SACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGD 734 (760)
Q Consensus 655 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (760)
..+... +...++++..+.+.++..+... .....|.+++|+.++++..+.
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l------------------------ 209 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL------------------------ 209 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc------------------------
Confidence 444332 2333445555544443333222 233445559999999998876
Q ss_pred CCCCChHHHHHHHHHHHHH
Q 041183 735 SSHSQSKEIYKELIKLYEH 753 (760)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~ 753 (760)
.|+..++...+.++...
T Consensus 210 --~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 210 --SPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp --CTTCHHHHHHHHHHHTT
T ss_pred --CCCCHHHHHHHHHHHHh
Confidence 67777777777766543
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.35 E-value=2.9e-11 Score=110.07 Aligned_cols=166 Identities=14% Similarity=0.055 Sum_probs=137.4
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 041183 512 DIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLT 587 (760)
Q Consensus 512 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~ 587 (760)
++.+|..+...|...|++++|...|++.. +.+..+|..+..+|.+.|++++|+..+.+.... .| +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 56678888888888888888888888763 446668888888899999999999999988873 45 4466666777
Q ss_pred HHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhH
Q 041183 588 SCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDL 665 (760)
Q Consensus 588 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~ 665 (760)
.+...++++.|...+..+.+ ..+.+...+..++.+|.+.|++++|++.|++.- .+.+..+|..+..++...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88889999999999999887 234457788889999999999999999998872 45678899999999999999999
Q ss_pred HHHHHHHHhccCCCCc
Q 041183 666 GLLAGSKLLELQPDNE 681 (760)
Q Consensus 666 A~~~~~~~~~~~p~~~ 681 (760)
|+..++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999653
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.34 E-value=2.1e-11 Score=133.95 Aligned_cols=161 Identities=19% Similarity=0.207 Sum_probs=141.1
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC-ChhHHHHH
Q 041183 544 LAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPD-EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIP-QLEHYACI 621 (760)
Q Consensus 544 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l 621 (760)
...|+.|...|.+.|++++|++.|++..+ +.|+ ...+..+..++.+.|++++|++.|+++.+ +.| +...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 45688888888899999999999998888 5674 57788888889999999999999999887 445 46788899
Q ss_pred HHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhH
Q 041183 622 VDLLGRVGLLEGAKMTIDQM-P-IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWND 699 (760)
Q Consensus 622 ~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 699 (760)
+.+|.+.|++++|++.|++. . .+.+..+|..+...+...|++++|++.|+++++++|+++.++..++.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999887 2 345678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 041183 700 VGKLRKEMKE 709 (760)
Q Consensus 700 A~~~~~~~~~ 709 (760)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=4e-10 Score=112.00 Aligned_cols=177 Identities=8% Similarity=0.040 Sum_probs=86.0
Q ss_pred HHHHHHHHhcCC---C-ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHhccCcHHHHHHHHH
Q 041183 530 EDAKRAFRKICR---D-SLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDE-I-TYLAVLTSCCHAGLVREARTYLS 603 (760)
Q Consensus 530 ~~A~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~-~~~~l~~~~~~~g~~~~A~~~~~ 603 (760)
++|..+|++... | +...|..++..+.+.|++++|.++|+++.+ +.|+. . .|..+...+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 555555554321 1 233455555555555555555555555555 34432 1 44555555555555555555555
Q ss_pred HhhhhcCCCCChhHHHHHHHHhh-hcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc---C
Q 041183 604 CMSDLHGLIPQLEHYACIVDLLG-RVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLEL---Q 677 (760)
Q Consensus 604 ~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~ 677 (760)
++.+ ..+++...|...+.... ..|++++|.++|+++- .+.++..|..++..+...|++++|..+|+++++. .
T Consensus 159 ~a~~--~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 159 KARE--DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHT--STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHh--cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 5554 11222333322222211 1455555555555541 2234455555555555555555555555555553 3
Q ss_pred CC-CchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 678 PD-NESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 678 p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
|+ ....|..++..+.+.|+.++|..+++++.+.
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 32 3445555555555555555555555555543
No 68
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.32 E-value=7.7e-12 Score=130.59 Aligned_cols=271 Identities=12% Similarity=0.012 Sum_probs=173.3
Q ss_pred HHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHh
Q 041183 380 MASILEAVSNSKSLKQAMQVHSHIIKSGFLLDD----SMISCLITTYGKCNALNESKRVLSEIDKKNAVHINALASVLVY 455 (760)
Q Consensus 380 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 455 (760)
+..+...+...|++++|...++.+.+.+.. +. ..+..+...|...|++++|...+++..+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------------- 114 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT--------------- 114 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------------
Confidence 444555666777777777777777765322 22 3455566666666666666666554321
Q ss_pred cCChhHHHHHHHHHHhCCC-CCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcC-----CCCCchHHHHHHHHHHhcCC-
Q 041183 456 ASCHAEALELYRTIWGSCR-EVNGSTFSIVLKACAAMTDLEQGKAIHCLALKAR-----YDQDIFVESAVIDMYCKCGT- 528 (760)
Q Consensus 456 ~~~~~~A~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~- 528 (760)
+.+. .+. ......+..+...+...|+++.|...+.++.+.. .+....++..+...|...|+
T Consensus 115 ---------~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 182 (411)
T 4a1s_A 115 ---------LAKS---MNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKH 182 (411)
T ss_dssp ---------HHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHH---ccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcc
Confidence 0000 000 1112234444455555555555555555544421 11123455666667777777
Q ss_pred ----------------HHHHHHHHHhcCC-----C----ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----
Q 041183 529 ----------------IEDAKRAFRKICR-----D----SLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGV-KPD---- 578 (760)
Q Consensus 529 ----------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~---- 578 (760)
+++|...+++... . ....+..+...+...|++++|...+++..+... .++
T Consensus 183 ~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 262 (411)
T 4a1s_A 183 LGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAE 262 (411)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHH
Confidence 7777766665421 1 123677788888889999999998888776210 011
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC----ChhHHHHHHHHhhhcCChHHHHHHHHhCC----CCC----C
Q 041183 579 EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIP----QLEHYACIVDLLGRVGLLEGAKMTIDQMP----IPP----D 646 (760)
Q Consensus 579 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p----~ 646 (760)
...+..+...+...|++++|...++++.+...-.. ....+..+..+|...|++++|.+++++.. ..+ .
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 342 (411)
T 4a1s_A 263 RRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGE 342 (411)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHH
Confidence 23677788889999999999999988876211111 14678889999999999999999998772 111 1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 041183 647 AHIWQSLLSACTIYGNIDLGLLAGSKLLELQP 678 (760)
Q Consensus 647 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 678 (760)
..++..+...+...|++++|...+++++++.+
T Consensus 343 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 343 ARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 44778888999999999999999999999876
No 69
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.31 E-value=4.1e-09 Score=114.27 Aligned_cols=403 Identities=9% Similarity=-0.002 Sum_probs=268.4
Q ss_pred cCCcchHHHHHHhhcCCCcchHHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCC---hHHHHHHHhcCCC-----CCeee
Q 041183 273 QINEYTMINLLSSVGGERILRAGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQ---VNDARSIFDYLIF-----KDSVS 344 (760)
Q Consensus 273 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~-----~~~~~ 344 (760)
+-|..+|..++..+.+.+.++.+..+++.+... ++.....|...+..-.+.++ ++.+..+|++... +++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 357778888888888888999999999998876 56677788888888888888 9999999998732 66777
Q ss_pred HHHHHHHHHhcCCc--------cHHHHHHHHHHH-CCC-CCC-HhhHHHHHHHhcC---------cCCHHHHHHHHHHHH
Q 041183 345 WNSMIAGYSENGFF--------NQALDMFCHMLE-FSL-IPN-GYTMASILEAVSN---------SKSLKQAMQVHSHII 404 (760)
Q Consensus 345 ~~~li~~~~~~g~~--------~~a~~~~~~m~~-~~~-~p~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~ 404 (760)
|...+.-..+.++. +...++|+.... .|. .|+ ...|...+..... .++++.+..+|+.++
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 77777665555543 233466766554 455 554 3456555554332 235677888888877
Q ss_pred HhCCCCChhHHHHHHHHHHh-------------cCChHHHHHHHhhc-------CCC--C--------------------
Q 041183 405 KSGFLLDDSMISCLITTYGK-------------CNALNESKRVLSEI-------DKK--N-------------------- 442 (760)
Q Consensus 405 ~~~~~~~~~~~~~l~~~~~~-------------~~~~~~A~~~~~~~-------~~~--~-------------------- 442 (760)
......-..+|......-.. ..+++.|...+.++ .+. .
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 42221112233221111101 11233344444331 110 0
Q ss_pred cccHHHHHHHHHhcC-------ChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHH-HHHHHHHHcCCCCCch
Q 041183 443 AVHINALASVLVYAS-------CHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGK-AIHCLALKARYDQDIF 514 (760)
Q Consensus 443 ~~~~~~l~~~~~~~~-------~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~ 514 (760)
...|...+.---..+ ..+.+..+|++....- .-....|...+.-+...|+.+.|. .++++..... +.+..
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~ 379 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAV 379 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHH
Confidence 012333333222222 1234556777776652 346667777777777888888896 9999998754 45666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-------------CC------------hHhHHHHHHHHHHcCCHHHHHHHHHH
Q 041183 515 VESAVIDMYCKCGTIEDAKRAFRKICR-------------DS------------LAGWNAMMMGYAQHGCYHEVSNLFNK 569 (760)
Q Consensus 515 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~ 569 (760)
.+...+....+.|+++.|.++|+++.. |+ ...|...+....+.|..+.|..+|.+
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777888888999999999999987742 31 23688888888888999999999999
Q ss_pred HHHC-CCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-
Q 041183 570 MSKF-GVKPDEITYLAVLTSCCH-AGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP-IPP- 645 (760)
Q Consensus 570 m~~~-g~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p- 645 (760)
+.+. +. +....|...+..-.+ .++.+.|.++|+...+. ++-+...+...++.....|+.+.|..+|++.- ..|
T Consensus 460 A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 460 CRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 9885 21 122333322222223 35589999999999983 45566777888888889999999999999873 233
Q ss_pred ---CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 041183 646 ---DAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNE 681 (760)
Q Consensus 646 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 681 (760)
....|...+..-.+.|+.+.+..+.+++.+..|+++
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 356788888888899999999999999999999764
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.31 E-value=4.5e-12 Score=126.61 Aligned_cols=164 Identities=13% Similarity=0.080 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhc-----CCCC
Q 041183 546 GWNAMMMGYAQHGCYHEVSNLFNKMSKF------GVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLH-----GLIP 613 (760)
Q Consensus 546 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~ 613 (760)
.+..+...+...|++++|...++++.+. +-.| ....+..+...+...|++++|..+++.+.+.. +..|
T Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 192 (311)
T 3nf1_A 113 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDP 192 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 4555555555666666666666555542 1122 22445555666666677777766666665510 1122
Q ss_pred -ChhHHHHHHHHhhhcCChHHHHHHHHhCC----------CCC-------CHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 041183 614 -QLEHYACIVDLLGRVGLLEGAKMTIDQMP----------IPP-------DAHIWQSLLSACTIYGNIDLGLLAGSKLLE 675 (760)
Q Consensus 614 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 675 (760)
....+..++.+|...|++++|.++++++. ..+ ....+..+...+...+.+.+|...++++..
T Consensus 193 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 272 (311)
T 3nf1_A 193 NVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV 272 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC
Confidence 23456666666677777777766666541 011 112223333444556677788888888888
Q ss_pred cCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 676 LQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 676 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
..|..+.++..++.+|.+.|++++|..++++..+
T Consensus 273 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 273 DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888889999999999999999999999988765
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.30 E-value=7.6e-11 Score=107.27 Aligned_cols=162 Identities=14% Similarity=0.059 Sum_probs=120.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 041183 546 GWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDL 624 (760)
Q Consensus 546 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 624 (760)
.|..+...+...|++++|...++++.+. .| +...+..+...+...|++++|...++.+.+ ..+.+...+..++..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLA--DAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHH
Confidence 3455566666667777777777666552 33 445566666677777777777777777766 133355667777777
Q ss_pred hhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHH
Q 041183 625 LGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGK 702 (760)
Q Consensus 625 ~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 702 (760)
+...|++++|.+.++++. .+.+...+..+...+...|++++|...++++++..|+++.++..++.++...|++++|..
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777777662 345677888888888999999999999999999999899999999999999999999999
Q ss_pred HHHHHHhCC
Q 041183 703 LRKEMKEKF 711 (760)
Q Consensus 703 ~~~~~~~~~ 711 (760)
++++..+..
T Consensus 166 ~~~~~~~~~ 174 (186)
T 3as5_A 166 HFKKANELD 174 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHcC
Confidence 999877643
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.30 E-value=7.1e-11 Score=121.78 Aligned_cols=222 Identities=9% Similarity=-0.027 Sum_probs=140.1
Q ss_pred HHhccCCHHHHHHHHHHHHHcCC-CC----CchHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCC-----hHhHHHHH
Q 041183 487 ACAAMTDLEQGKAIHCLALKARY-DQ----DIFVESAVIDMYCKCGTIEDAKRAFRKIC-----RDS-----LAGWNAMM 551 (760)
Q Consensus 487 ~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~-----~~~~~~l~ 551 (760)
.+...|+++.|...+++..+.-. .+ ...++..+...|...|++++|...+.+.. .++ ..+++.+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 34445555555555555544200 01 13455556666666666666666665442 111 23566677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhhhh---cCC-CCChhHHHHHH
Q 041183 552 MGYAQHGCYHEVSNLFNKMSKFGV-KPD----EITYLAVLTSCCHAGLVREARTYLSCMSDL---HGL-IPQLEHYACIV 622 (760)
Q Consensus 552 ~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~-~~~~~~~~~l~ 622 (760)
..|...|++++|+..|++..+... .++ ..++..+...+...|++++|...+++..+- .+. +....++..++
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 777777777777777777664210 011 135666777788888888888888777651 123 22356677788
Q ss_pred HHhhhcCChHHHHHHHHhCC------CCCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 041183 623 DLLGRVGLLEGAKMTIDQMP------IPPD-AHIWQSLLSACTIYGN---IDLGLLAGSKLLELQPDNESTYVLLSNLYA 692 (760)
Q Consensus 623 ~~~~~~g~~~~A~~~~~~~~------~~p~-~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 692 (760)
.+|.+.|++++|.+.+++.- ..|. ...+..+...+...|+ +++|+..+++. ...|....++..++.+|.
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHH
Confidence 88888888888888887661 1222 2234556666777787 77777777776 333446678888999999
Q ss_pred hcCChhHHHHHHHHHHh
Q 041183 693 SAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 693 ~~g~~~~A~~~~~~~~~ 709 (760)
..|++++|..++++..+
T Consensus 351 ~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 99999999999998765
No 73
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.29 E-value=9.3e-11 Score=118.37 Aligned_cols=134 Identities=15% Similarity=0.035 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCC----hh
Q 041183 546 GWNAMMMGYAQHGCYHEVSNLFNKMSKFGV-KPD----EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQ----LE 616 (760)
Q Consensus 546 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~ 616 (760)
.+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+...-..+ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 566677777888888888888877665210 011 236677777888888899888888887652111111 45
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 041183 617 HYACIVDLLGRVGLLEGAKMTIDQMP----IPPD----AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPD 679 (760)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 679 (760)
++..+...+...|++++|...++++. ..++ ..++..+...+...|++++|...+++++++.+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 67788888889999999988888761 1111 446778888999999999999999999998763
No 74
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.28 E-value=2.6e-08 Score=108.02 Aligned_cols=417 Identities=9% Similarity=-0.070 Sum_probs=282.3
Q ss_pred HHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcCC---CCCeeeHHHHHHHHHhcCC---ccHHHHHHHH
Q 041183 294 AGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYLI---FKDSVSWNSMIAGYSENGF---FNQALDMFCH 367 (760)
Q Consensus 294 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~---~~~a~~~~~~ 367 (760)
.....++..+... +-|...|..++..+.+.+.++.+..+|+++. ..+...|...+..-.+.|+ .+.+.++|++
T Consensus 50 d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp CHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 3344455555544 4688999999999999999999999999883 3356678888888888888 9999999999
Q ss_pred HHHCC-CCCCHhhHHHHHHHhcCcCC--------HHHHHHHHHHHHH-hCC-CCC-hhHHHHHHHHHHh---------cC
Q 041183 368 MLEFS-LIPNGYTMASILEAVSNSKS--------LKQAMQVHSHIIK-SGF-LLD-DSMISCLITTYGK---------CN 426 (760)
Q Consensus 368 m~~~~-~~p~~~~~~~ll~~~~~~~~--------~~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~---------~~ 426 (760)
..... ..|+...|..-+....+.++ .+.+.++|+..+. .|. .++ ...|...+..... .+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 98763 13777777666655444333 2445577777665 466 443 4677777765442 34
Q ss_pred ChHHHHHHHhhcCCCCcccHHHHHHHHH---h--------------cCChhHHHHHHHHHHh--CCCC------------
Q 041183 427 ALNESKRVLSEIDKKNAVHINALASVLV---Y--------------ASCHAEALELYRTIWG--SCRE------------ 475 (760)
Q Consensus 427 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~---~--------------~~~~~~A~~~~~~m~~--~~~~------------ 475 (760)
+++.+..+|++...-....+..+-..|. + ..+++.|...+.++.. .++.
T Consensus 209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence 5778899999887521111111111111 0 1122334444444321 1110
Q ss_pred ---C--C------hhHHHHHHHHHhccC-------CHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHH-HHH
Q 041183 476 ---V--N------GSTFSIVLKACAAMT-------DLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAK-RAF 536 (760)
Q Consensus 476 ---~--~------~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~ 536 (760)
| + ...|...+.---..+ ...++..+|++++... +.....|...+..+...|+.++|. .+|
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1 0 023333333222222 1345667788888764 457888888888888999999996 999
Q ss_pred HhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHHHhcc
Q 041183 537 RKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFG---------VKPD------------EITYLAVLTSCCHA 592 (760)
Q Consensus 537 ~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---------~~p~------------~~~~~~l~~~~~~~ 592 (760)
++.. +.+...|...+....+.|+++.|.++|+++.+.. -.|+ ...|...+....+.
T Consensus 368 ~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~ 447 (679)
T 4e6h_A 368 KLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI 447 (679)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc
Confidence 8763 4566678888888999999999999999988631 0142 23566667777788
Q ss_pred CcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhc-CChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 041183 593 GLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRV-GLLEGAKMTIDQM--PIPPDAHIWQSLLSACTIYGNIDLGLLA 669 (760)
Q Consensus 593 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 669 (760)
|..+.|+.+|..+.+. ...+....|...+..-.+. ++++.|.++|+.. ..+.++..|...+......|+.+.|..+
T Consensus 448 ~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~l 526 (679)
T 4e6h_A 448 QGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSL 526 (679)
T ss_dssp HCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999999872 1122334454444333444 4599999999987 2445677788888888889999999999
Q ss_pred HHHHhccCCC---CchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 041183 670 GSKLLELQPD---NESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLC 713 (760)
Q Consensus 670 ~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 713 (760)
|++++...|+ ....|...+..-.+.|+.+.+.++.+++.+....
T Consensus 527 feral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 527 FESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999998873 4567888888888999999999999999876543
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.26 E-value=4.4e-10 Score=115.78 Aligned_cols=229 Identities=11% Similarity=0.035 Sum_probs=173.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC-CCC----hhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-C-----CchHHH
Q 041183 449 LASVLVYASCHAEALELYRTIWGSCR-EVN----GSTFSIVLKACAAMTDLEQGKAIHCLALKARYD-Q-----DIFVES 517 (760)
Q Consensus 449 l~~~~~~~~~~~~A~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 517 (760)
....+...|++++|+..|++....-. .++ ..++..+...+...|+++.|...+.+..+.... + ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 45566778888888888888765311 122 246777778888889999998888888763211 1 135778
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC-----CCCh----HhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHH
Q 041183 518 AVIDMYCKCGTIEDAKRAFRKIC-----RDSL----AGWNAMMMGYAQHGCYHEVSNLFNKMSKF----GVKP-DEITYL 583 (760)
Q Consensus 518 ~l~~~~~~~~~~~~A~~~~~~~~-----~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~ 583 (760)
.+...|...|++++|...|++.. .++. .++..+...|...|++++|+..+++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 88899999999999999988763 1222 36888999999999999999999988762 2324 346788
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhhc---CCCCChhHHHHHHHHhhhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 041183 584 AVLTSCCHAGLVREARTYLSCMSDLH---GLIPQLEHYACIVDLLGRVGL---LEGAKMTIDQMPIPPD-AHIWQSLLSA 656 (760)
Q Consensus 584 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~ 656 (760)
.+...+.+.|++++|...+++..+.. +.+.....+..+...+...|+ +++|..++++....|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 88899999999999999999987621 112223346778889999999 9999999999864444 3467788899
Q ss_pred HHhcCChhHHHHHHHHHhccC
Q 041183 657 CTIYGNIDLGLLAGSKLLELQ 677 (760)
Q Consensus 657 ~~~~~~~~~A~~~~~~~~~~~ 677 (760)
+...|++++|...+++++++.
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999854
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.26 E-value=2.2e-09 Score=110.18 Aligned_cols=258 Identities=13% Similarity=0.023 Sum_probs=150.3
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChh----HHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CC----chHHHHHHHH
Q 041183 452 VLVYASCHAEALELYRTIWGSCREVNGS----TFSIVLKACAAMTDLEQGKAIHCLALKARYD-QD----IFVESAVIDM 522 (760)
Q Consensus 452 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~ 522 (760)
.+...|++++|...+++........+.. .+..+...+...|+++.|...+++..+.... .+ ..++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3445566666666666554433222211 3344445555666777666666665542111 11 1224456666
Q ss_pred HHhcCCHHHHHHHHHhcC-------C---C-ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--C--CHHHHHHHHH
Q 041183 523 YCKCGTIEDAKRAFRKIC-------R---D-SLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVK--P--DEITYLAVLT 587 (760)
Q Consensus 523 ~~~~~~~~~A~~~~~~~~-------~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~~~~~l~~ 587 (760)
+...|++++|...+++.. . + ....+..+...+...|++++|...+++..+.... | ...++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 677777777777766542 1 1 1124555666777778888887777776653211 1 1245556666
Q ss_pred HHhccCcHHHHHHHHHHhhhhcCCCCChhHHH-----HHHHHhhhcCChHHHHHHHHhCC-CCC-----CHHHHHHHHHH
Q 041183 588 SCCHAGLVREARTYLSCMSDLHGLIPQLEHYA-----CIVDLLGRVGLLEGAKMTIDQMP-IPP-----DAHIWQSLLSA 656 (760)
Q Consensus 588 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p-----~~~~~~~l~~~ 656 (760)
.+...|++++|...+++.............+. ..+..+...|++++|..++++.. ..| ....+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 77777888888888777765211111111111 23344667788888888887763 111 12345666777
Q ss_pred HHhcCChhHHHHHHHHHhccCCC------CchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 657 CTIYGNIDLGLLAGSKLLELQPD------NESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 657 ~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
+...|++++|...++++.+..+. ...++..++.++...|++++|...+++..+
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77788888888888887765321 123666777888888888888888877654
No 77
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.26 E-value=1.1e-09 Score=108.69 Aligned_cols=218 Identities=11% Similarity=0.064 Sum_probs=162.6
Q ss_pred hHHHHHHHHHHhCCCCCChhHHHHHHHHHh-------ccCCH-------HHHHHHHHHHHHcCCCCCchHHHHHHHHHHh
Q 041183 460 AEALELYRTIWGSCREVNGSTFSIVLKACA-------AMTDL-------EQGKAIHCLALKARYDQDIFVESAVIDMYCK 525 (760)
Q Consensus 460 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 525 (760)
++|...|++..... +.+...|..+...+. ..|++ +.|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777776642 234455655555554 34665 7888888888873223456688888888888
Q ss_pred cCCHHHHHHHHHhcC--CC-ChH-hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-hccCcHHHHH
Q 041183 526 CGTIEDAKRAFRKIC--RD-SLA-GWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSC-CHAGLVREAR 599 (760)
Q Consensus 526 ~~~~~~A~~~~~~~~--~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~-~~~g~~~~A~ 599 (760)
.|++++|..+|++.. .| +.. .|..++..+.+.|++++|..+|++..+. .| +...|....... ...|+++.|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999998774 23 343 7888888888999999999999999884 34 334443333222 2369999999
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041183 600 TYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP----IPP--DAHIWQSLLSACTIYGNIDLGLLAGSKL 673 (760)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 673 (760)
.+|+.+.+. .+-+...|..++..+.+.|++++|..+|+++- .+| ....|..++......|+.+.|..+++++
T Consensus 190 ~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999872 33467888899999999999999999999872 254 4678899999999999999999999999
Q ss_pred hccCCCCch
Q 041183 674 LELQPDNES 682 (760)
Q Consensus 674 ~~~~p~~~~ 682 (760)
++..|++..
T Consensus 268 ~~~~p~~~~ 276 (308)
T 2ond_A 268 FTAFREEYE 276 (308)
T ss_dssp HHHTTTTTS
T ss_pred HHHcccccc
Confidence 999997553
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.25 E-value=4.7e-10 Score=106.00 Aligned_cols=205 Identities=11% Similarity=0.035 Sum_probs=163.3
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHH
Q 041183 476 VNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMM 552 (760)
Q Consensus 476 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~ 552 (760)
.++..+......+...|+++.|...|+...+...+++...+..+..++...|++++|...|++.. +.+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 45678888888999999999999999999998754777888889999999999999999999874 334568999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCC---hhHHHHH
Q 041183 553 GYAQHGCYHEVSNLFNKMSKFGVKPD-E-------ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQ---LEHYACI 621 (760)
Q Consensus 553 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l 621 (760)
++...|++++|+..|++..+ ..|+ . ..|..+...+...|++++|...|+.+.+ ..|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 99999999999999999998 5564 3 3466777888999999999999999987 4554 5778888
Q ss_pred HHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 041183 622 VDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYA 692 (760)
Q Consensus 622 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 692 (760)
..+|...|+. .++++. ...+...+.... ....+.+++|+..+++++++.|+++.+...+..+..
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 8888766543 233321 123344444433 334567999999999999999999988888776643
No 79
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.22 E-value=4e-10 Score=109.02 Aligned_cols=205 Identities=9% Similarity=0.007 Sum_probs=139.0
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-C---hHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHH
Q 041183 512 DIFVESAVIDMYCKCGTIEDAKRAFRKIC--RD-S---LAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPD----EIT 581 (760)
Q Consensus 512 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~ 581 (760)
+...+..+...+.+.|++++|...|+.+. .| + ...+..+..+|.+.|++++|+..|++..+. .|+ ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHH
Confidence 45555666667777777777777777664 22 2 345666677777777777777777777763 332 234
Q ss_pred HHHHHHHHhc--------cCcHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 041183 582 YLAVLTSCCH--------AGLVREARTYLSCMSDLHGLIPQ-LEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQS 652 (760)
Q Consensus 582 ~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 652 (760)
+..+..++.. .|++++|...|+.+.+. .|+ ......+.......++. ...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHH
Confidence 4555556666 77777777777777662 232 22222211111000000 112466
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCC---chhHHHHHHHHHhc----------CChhHHHHHHHHHHhCCCCCCCcee
Q 041183 653 LLSACTIYGNIDLGLLAGSKLLELQPDN---ESTYVLLSNLYASA----------GMWNDVGKLRKEMKEKFLCKEPGYS 719 (760)
Q Consensus 653 l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~ 719 (760)
+...+...|++++|+..++++++..|++ +.++..++.+|... |++++|+..++++.+...
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p------- 226 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP------- 226 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-------
Confidence 7888999999999999999999999974 45899999999977 999999999999987631
Q ss_pred EEEECCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHhhhc
Q 041183 720 WIHVGGYTHHFYAGDSSHSQSKEIYKELIKLYEHMVATAK 759 (760)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (760)
.+|...+....+++++.++++.++
T Consensus 227 ----------------~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 227 ----------------DSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp ----------------TCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----------------CChHHHHHHHHHHHHHHHHHHhhh
Confidence 256668889999999999988764
No 80
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.22 E-value=2.1e-11 Score=121.64 Aligned_cols=201 Identities=10% Similarity=0.048 Sum_probs=121.5
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHHc------CC-CCCchHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C--
Q 041183 479 STFSIVLKACAAMTDLEQGKAIHCLALKA------RY-DQDIFVESAVIDMYCKCGTIEDAKRAFRKICR-------D-- 542 (760)
Q Consensus 479 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~-- 542 (760)
..+..+...+...|+++.|...++++.+. +. +....++..+...|...|++++|...+++... +
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 149 (311)
T 3nf1_A 70 TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH 149 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555555666666666666666665543 11 12345566667777777777777777765521 1
Q ss_pred --ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhhc----
Q 041183 543 --SLAGWNAMMMGYAQHGCYHEVSNLFNKMSKF------GVKPD-EITYLAVLTSCCHAGLVREARTYLSCMSDLH---- 609 (760)
Q Consensus 543 --~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---- 609 (760)
....+..+...+...|++++|++.++++.+. +..|+ ..++..+...+...|++++|...++++.+..
T Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 229 (311)
T 3nf1_A 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE 229 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 2235777778888888888888888887763 22343 3567777888888999999998888887510
Q ss_pred --CCCCCh-h------HHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 041183 610 --GLIPQL-E------HYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQP 678 (760)
Q Consensus 610 --~~~~~~-~------~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 678 (760)
...+.. . .+..+...+...+.+.+|...++... .+....++..+...+...|++++|...+++++++.|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 230 FGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred CCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 122221 1 22223333344455556666666653 233456788999999999999999999999999877
Q ss_pred C
Q 041183 679 D 679 (760)
Q Consensus 679 ~ 679 (760)
+
T Consensus 310 ~ 310 (311)
T 3nf1_A 310 Q 310 (311)
T ss_dssp -
T ss_pred c
Confidence 4
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.18 E-value=8.7e-10 Score=100.14 Aligned_cols=167 Identities=11% Similarity=0.020 Sum_probs=141.8
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 041183 513 IFVESAVIDMYCKCGTIEDAKRAFRKICR---DSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTS 588 (760)
Q Consensus 513 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~ 588 (760)
...+..+...+...|++++|...++++.. .+...+..+...+...|++++|...++++.+. .| +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 34566778888899999999999988753 35667888999999999999999999999884 45 56778888889
Q ss_pred HhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHH
Q 041183 589 CCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLG 666 (760)
Q Consensus 589 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A 666 (760)
+...|++++|.+.++.+.+ ..+.+...+..++..+...|++++|.+.++++. .+.+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAE--ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHh--cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999987 244567888899999999999999999999872 455678899999999999999999
Q ss_pred HHHHHHHhccCCCCchh
Q 041183 667 LLAGSKLLELQPDNEST 683 (760)
Q Consensus 667 ~~~~~~~~~~~p~~~~~ 683 (760)
...++++++..|+++..
T Consensus 164 ~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 164 LPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHcCCCchhh
Confidence 99999999998876543
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.17 E-value=7.9e-09 Score=106.08 Aligned_cols=163 Identities=11% Similarity=-0.004 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhh---cCCCCChhH
Q 041183 546 GWNAMMMGYAQHGCYHEVSNLFNKMSKF----GVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDL---HGLIPQLEH 617 (760)
Q Consensus 546 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~ 617 (760)
+++.+...|...|++++|.+.|++..+. +-.+ ...++..+...+...|++++|...+++..+. .+.+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 3444455555555555555555544331 1001 1134444555555556666665555555431 012222445
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC----C--CCCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCchhHHHH
Q 041183 618 YACIVDLLGRVGLLEGAKMTIDQM----P--IPPD-AHIWQSLLSACTIYGN---IDLGLLAGSKLLELQPDNESTYVLL 687 (760)
Q Consensus 618 ~~~l~~~~~~~g~~~~A~~~~~~~----~--~~p~-~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l 687 (760)
+..++.++.+.|++++|..++++. + ..|. ...+..+...+...++ +.+|+..+++. ...|+....+..+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~l 342 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHH
Confidence 555566666666666666655544 1 1122 2233334444444555 55555555552 1223344566677
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 041183 688 SNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 688 ~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
+.+|...|++++|..++++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777776543
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.16 E-value=1.9e-09 Score=110.68 Aligned_cols=304 Identities=13% Similarity=0.025 Sum_probs=215.8
Q ss_pred CCCCHhhHHHHHHHh--cCcCCHHHHHHHHHHHHHhC--CCCCh--hHHHHHHHHH--HhcCChHHHH---------HHH
Q 041183 373 LIPNGYTMASILEAV--SNSKSLKQAMQVHSHIIKSG--FLLDD--SMISCLITTY--GKCNALNESK---------RVL 435 (760)
Q Consensus 373 ~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~--~~~~~--~~~~~l~~~~--~~~~~~~~A~---------~~~ 435 (760)
..|+...-..+-..+ ...+++++|..+++++.+.. +..+. ..|-.++..- .-.+.+..+. ..+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 456666666666666 78899999999999987642 22233 3334444321 1112222222 444
Q ss_pred hhcCC---CCc--c---cHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----hhHHHHHHHHHhccCCHHHHHHHHH
Q 041183 436 SEIDK---KNA--V---HINALASVLVYASCHAEALELYRTIWGSCR-EVN----GSTFSIVLKACAAMTDLEQGKAIHC 502 (760)
Q Consensus 436 ~~~~~---~~~--~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~ 502 (760)
+.+.. +.. . .+......+...|++++|+..|++...... .++ ..++..+...+...|+++.|...+.
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 44432 211 1 223345567889999999999999876421 123 2367788889999999999999999
Q ss_pred HHHHcCCC-C-----CchHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hHhHHHHHHHHHHcCCHHHHHHHH
Q 041183 503 LALKARYD-Q-----DIFVESAVIDMYCKCGTIEDAKRAFRKICR-----DS----LAGWNAMMMGYAQHGCYHEVSNLF 567 (760)
Q Consensus 503 ~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~ 567 (760)
+..+.... + ...+++.+...|...|++++|.+.|.+... ++ ..++..+..+|...|++++|+..+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 98873211 1 245778899999999999999999987631 22 236888999999999999999999
Q ss_pred HHHHH-----CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCC---CCChhHHHHHHHHhhhcCC---hHHHHH
Q 041183 568 NKMSK-----FGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGL---IPQLEHYACIVDLLGRVGL---LEGAKM 636 (760)
Q Consensus 568 ~~m~~-----~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~ 636 (760)
++..+ .. +....++..+...+.+.|++++|...+++..+...- +.....+..+...+...|+ +++|+.
T Consensus 246 ~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 246 QKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99887 32 223567888889999999999999999998873222 1123456777778888888 999999
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 041183 637 TIDQMPIPPD-AHIWQSLLSACTIYGNIDLGLLAGSKLLELQ 677 (760)
Q Consensus 637 ~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 677 (760)
++++....|+ ...+..+...+...|++++|...++++++..
T Consensus 325 ~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 325 YFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9998764444 3466778888999999999999999988753
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.15 E-value=3.9e-10 Score=123.88 Aligned_cols=155 Identities=12% Similarity=0.107 Sum_probs=137.7
Q ss_pred CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHH
Q 041183 575 VKPD-EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIP-QLEHYACIVDLLGRVGLLEGAKMTIDQM-P-IPPDAHIW 650 (760)
Q Consensus 575 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~ 650 (760)
-.|+ ...|+.|...+.+.|++++|++.|+++.+ +.| +...|..|..+|.+.|++++|++.|+++ . .+.+..+|
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~---l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~ 80 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 80 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4564 47899999999999999999999999998 455 4788999999999999999999999988 3 34568899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEE
Q 041183 651 QSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHF 730 (760)
Q Consensus 651 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (760)
..+..++...|++++|++.|+++++++|+++.++..++.+|.+.|++++|+..+++..+.
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-------------------- 140 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL-------------------- 140 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------
Confidence 999999999999999999999999999999999999999999999999999999998875
Q ss_pred EcCCCCCCChHHHHHHHHHHHHHHHhhh
Q 041183 731 YAGDSSHSQSKEIYKELIKLYEHMVATA 758 (760)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (760)
+|+..+.+..++.+|.++++.+
T Consensus 141 ------~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 141 ------KPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp ------CSCCHHHHHHHHHHHHHTTCCT
T ss_pred ------CCCChHHHhhhhhHHHhcccHH
Confidence 6778888888888888777654
No 85
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.15 E-value=5.7e-09 Score=99.95 Aligned_cols=39 Identities=8% Similarity=-0.079 Sum_probs=19.7
Q ss_pred HHhcCChHHHHHHHhhcCCCCcc-cHHHHHHHHHhcCChh
Q 041183 422 YGKCNALNESKRVLSEIDKKNAV-HINALASVLVYASCHA 460 (760)
Q Consensus 422 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~ 460 (760)
..-.|.+..++.-...+...+.. ....+.++|...|++.
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~ 62 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQ 62 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCC
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCc
Confidence 44467777777655555433222 1222335565555554
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.14 E-value=7.3e-11 Score=102.80 Aligned_cols=120 Identities=12% Similarity=-0.014 Sum_probs=67.4
Q ss_pred HHhccCcHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChh
Q 041183 588 SCCHAGLVREARTYLSCMSDLHGLIP-QLEHYACIVDLLGRVGLLEGAKMTIDQM-P-IPPDAHIWQSLLSACTIYGNID 664 (760)
Q Consensus 588 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~ 664 (760)
.+...|++++|+..++.... ..| +...+..+..+|.+.|++++|++.|++. . .+.++.+|..+...+...|+++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 34445555666555555543 222 2334445555666666666666666555 1 2334556666666666666666
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHH-HHHHHhC
Q 041183 665 LGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKL-RKEMKEK 710 (760)
Q Consensus 665 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~ 710 (760)
+|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 666666666666666666666666666666666554443 3555443
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.11 E-value=1.1e-09 Score=107.84 Aligned_cols=185 Identities=7% Similarity=-0.074 Sum_probs=123.9
Q ss_pred HHHhcCCHHHHHHHHHhcCC-----CC----hHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---C----HHHHHHH
Q 041183 522 MYCKCGTIEDAKRAFRKICR-----DS----LAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP---D----EITYLAV 585 (760)
Q Consensus 522 ~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p---~----~~~~~~l 585 (760)
.|...|++++|...|.+... .+ ..+|+.+..+|.+.|++++|+..|++..+. .| + ..++..+
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI--FTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHH
Confidence 45556666666666654421 11 235677777777788888888877776652 22 1 3467777
Q ss_pred HHHHhcc-CcHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC---H-----HHHH
Q 041183 586 LTSCCHA-GLVREARTYLSCMSDLHGLIPQ----LEHYACIVDLLGRVGLLEGAKMTIDQMP-IPPD---A-----HIWQ 651 (760)
Q Consensus 586 ~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~-----~~~~ 651 (760)
...|... |++++|+..|++..+...-..+ ..++..++..+.+.|++++|+..+++.. ..|+ . ..|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 7888886 9999999999888762110111 3567888999999999999999998772 2222 1 2567
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCchh-----HHHHHHHHH--hcCChhHHHHHHHHHH
Q 041183 652 SLLSACTIYGNIDLGLLAGSKLLELQPDNEST-----YVLLSNLYA--SAGMWNDVGKLRKEMK 708 (760)
Q Consensus 652 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~~~ 708 (760)
.+..++...|++++|+..+++++++.|+.... +..++.++. ..+++++|+..++++.
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 78888889999999999999999999875543 445566665 4577888888887554
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.08 E-value=1.2e-09 Score=107.03 Aligned_cols=221 Identities=13% Similarity=0.095 Sum_probs=156.0
Q ss_pred hccCCHHHHHHHHHHHHHc-------CCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----ChHhHHHH
Q 041183 489 AAMTDLEQGKAIHCLALKA-------RYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICR-------D----SLAGWNAM 550 (760)
Q Consensus 489 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l 550 (760)
...|+++.|...+++..+. ..+....++..+...|...|++++|...+++... + ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777888777777652 2223467788899999999999999999987631 1 23478889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhc-----CCCC-ChhH
Q 041183 551 MMGYAQHGCYHEVSNLFNKMSKF------GVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLH-----GLIP-QLEH 617 (760)
Q Consensus 551 ~~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~-~~~~ 617 (760)
...|...|++++|.+.|+++.+. .-.| ....+..+...+...|++++|...++++.+.. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998774 1124 34677888889999999999999999988720 1123 3567
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHhcCC------hhHHHHHHHHHhccCCCC
Q 041183 618 YACIVDLLGRVGLLEGAKMTIDQMP----------IPPD-AHIWQSLLSACTIYGN------IDLGLLAGSKLLELQPDN 680 (760)
Q Consensus 618 ~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~-~~~~~~l~~~~~~~~~------~~~A~~~~~~~~~~~p~~ 680 (760)
+..++.+|.+.|++++|.++++++. ..+. ...|..+.......+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8889999999999999999998761 1222 2234444333333332 334444444444445667
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 681 ESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 681 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
..++..++.+|...|++++|..++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78999999999999999999999998765
No 89
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.05 E-value=1.8e-09 Score=119.41 Aligned_cols=167 Identities=12% Similarity=0.025 Sum_probs=88.4
Q ss_pred hccCCHHHHHHHHHHHH--------HcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHc
Q 041183 489 AAMTDLEQGKAIHCLAL--------KARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQH 557 (760)
Q Consensus 489 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 557 (760)
...|++++|.+.++++. +.. +.+...+..+...|...|++++|...|++.. ..+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 55666666666666665 222 2344555555666666666666666665543 23444555555566666
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHH
Q 041183 558 GCYHEVSNLFNKMSKFGVKPD-EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKM 636 (760)
Q Consensus 558 ~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 636 (760)
|++++|++.|++..+ ..|+ ...+..+..++.+.|++++ .+.|+++.+ -.+.+...|..+..++.+.|++++|++
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666555 3442 3445555555556666666 666665554 112234555555555666666666666
Q ss_pred HHHhCC-CCCC-HHHHHHHHHHHHhcC
Q 041183 637 TIDQMP-IPPD-AHIWQSLLSACTIYG 661 (760)
Q Consensus 637 ~~~~~~-~~p~-~~~~~~l~~~~~~~~ 661 (760)
.|+++. ..|+ ...|..+..++...+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccC
Confidence 665552 3333 334444544444433
No 90
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.05 E-value=4.1e-10 Score=97.99 Aligned_cols=141 Identities=10% Similarity=-0.035 Sum_probs=108.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHhhhc
Q 041183 551 MMGYAQHGCYHEVSNLFNKMSKFGVKPD-EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIP-QLEHYACIVDLLGRV 628 (760)
Q Consensus 551 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 628 (760)
...+...|++++|++.+++... ..|+ ...+..+...|.+.|++++|++.|+++.+ +.| +...|..+..+|.+.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHc
Confidence 3444556777888887777665 3453 34455667778888888888888888877 334 567788888888888
Q ss_pred CChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHH-HHHHHhccCCCCchhHHHHHHHHHhcCC
Q 041183 629 GLLEGAKMTIDQM-P-IPPDAHIWQSLLSACTIYGNIDLGLL-AGSKLLELQPDNESTYVLLSNLYASAGM 696 (760)
Q Consensus 629 g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 696 (760)
|++++|+..|++. . .+.++.+|..+...+.+.|++++|.. .++++++++|+++.+|.....++...|+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888888877 2 34467889999999999999977665 5699999999999999999999998885
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.04 E-value=3.6e-09 Score=104.04 Aligned_cols=222 Identities=9% Similarity=-0.050 Sum_probs=133.8
Q ss_pred ChHHHHHHHhhcCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-hhHHHHHHHHHhccCCHHHHHHHH
Q 041183 427 ALNESKRVLSEIDKKNAVHINALASVLVYASCHAEALELYRTIWGS----CREVN-GSTFSIVLKACAAMTDLEQGKAIH 501 (760)
Q Consensus 427 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~ 501 (760)
++++|...|.+. ...|...|++++|+..|.+.... |..++ ..+|..+..++...|+++.|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467777766553 55666777777777777665432 11111 224444444455555555555554
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCC--
Q 041183 502 CLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQH-GCYHEVSNLFNKMSKFGVKPD-- 578 (760)
Q Consensus 502 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~g~~p~-- 578 (760)
++..+.. ...|+...+ ..+++.+...|... |++++|+..|++..+ +.|+
T Consensus 101 ~~Al~l~---------------~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~~~~~~ 152 (292)
T 1qqe_A 101 ENAIQIF---------------THRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGE--WYAQDQ 152 (292)
T ss_dssp HHHHHHH---------------HHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HHHHTT
T ss_pred HHHHHHH---------------HHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--HHHhCC
Confidence 4443311 111222111 22566777788885 888888888888776 2231
Q ss_pred -----HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCCh-----hHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH
Q 041183 579 -----EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQL-----EHYACIVDLLGRVGLLEGAKMTIDQM-PIPPDA 647 (760)
Q Consensus 579 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 647 (760)
..++..+...+.+.|++++|+..|+.+.+...-.+.. ..|..++.++...|++++|...+++. ...|+.
T Consensus 153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 2457777888888999999999999888721111121 15677788888899999999999887 334432
Q ss_pred H------HHHHHHHHHH--hcCChhHHHHHHHHHhccCCCCchhHHHH
Q 041183 648 H------IWQSLLSACT--IYGNIDLGLLAGSKLLELQPDNESTYVLL 687 (760)
Q Consensus 648 ~------~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 687 (760)
. .+..++.++. ..+++++|+..|+++..++|.....+..+
T Consensus 233 ~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~ 280 (292)
T 1qqe_A 233 ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKI 280 (292)
T ss_dssp -----HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 1 3444555554 35678889999988888888554444333
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.03 E-value=2.5e-08 Score=95.52 Aligned_cols=168 Identities=8% Similarity=0.015 Sum_probs=99.4
Q ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CHH
Q 041183 511 QDIFVESAVIDMYCKCGTIEDAKRAFRKICR-----DSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-----DEI 580 (760)
Q Consensus 511 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-----~~~ 580 (760)
++...+..+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+ ..| +..
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~d~~~~~d~ 175 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIEDTVSGDNE 175 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccccccchH
Confidence 3334444555666666666666666665522 1333555666777777777777777777766 456 244
Q ss_pred HHHHHHHHH--hccC--cHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-C-----------C
Q 041183 581 TYLAVLTSC--CHAG--LVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP-I-----------P 644 (760)
Q Consensus 581 ~~~~l~~~~--~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-----------~ 644 (760)
+...|..++ ...| ++..|..+|+++.+ ..|+...-..+..++.+.|++++|.+.++.+. . +
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p 252 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQ---TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVL 252 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHS
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCC
Confidence 555555442 2223 67777777777755 23442222333336777777777777776542 1 3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHH
Q 041183 645 PDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYV 685 (760)
Q Consensus 645 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 685 (760)
.++.++..++......|+ +|.++++++.+..|+++.+..
T Consensus 253 ~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 253 YKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp SHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred CCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 355566555555555565 777888888888887765554
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.03 E-value=9.3e-09 Score=96.65 Aligned_cols=183 Identities=13% Similarity=0.006 Sum_probs=122.8
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHhcC--CCC----hHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HH
Q 041183 513 IFVESAVIDMYCKCGTIEDAKRAFRKIC--RDS----LAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEI----TY 582 (760)
Q Consensus 513 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~ 582 (760)
...+..+...+...|++++|...|+.+. .|+ ...+..+..++.+.|++++|+..|+++.+ ..|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHHH
Confidence 3455566777888888888888888774 232 23567777888888888888888888887 345432 33
Q ss_pred HHHHHHHhc------------------cCcHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhCCC
Q 041183 583 LAVLTSCCH------------------AGLVREARTYLSCMSDLHGLIPQ-LEHYACIVDLLGRVGLLEGAKMTIDQMPI 643 (760)
Q Consensus 583 ~~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 643 (760)
..+..++.. .|++++|...|+.+.+ ..|+ ...+........ ....
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~P~~~~a~~a~~~l~~----~~~~--------- 145 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR---GYPNSQYTTDATKRLVF----LKDR--------- 145 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT---TCTTCTTHHHHHHHHHH----HHHH---------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH---HCcCChhHHHHHHHHHH----HHHH---------
Confidence 334444433 4567777777777765 2232 222221111000 0000
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc---hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 041183 644 PPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNE---STYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKE 715 (760)
Q Consensus 644 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 715 (760)
.......+...+.+.|++++|+..++++++..|+++ .++..++.+|.+.|++++|++.++++...+....
T Consensus 146 --~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 146 --LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp --HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred --HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 001123456778899999999999999999999876 6799999999999999999999999988765433
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.02 E-value=5.2e-09 Score=89.10 Aligned_cols=126 Identities=20% Similarity=0.183 Sum_probs=83.8
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc
Q 041183 583 LAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIY 660 (760)
Q Consensus 583 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~ 660 (760)
..+...+...|++++|..+++.+.+. .+.+...+..++..+...|++++|..+++++. .+.+...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 33444455555555555555555441 22234445555555555566666665555541 234556677777778888
Q ss_pred CChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 661 GNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 661 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
|++++|...++++.+..|+++.++..++.++...|++++|...++++.+.
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 88888888888888888888888888888888888888888888887654
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.01 E-value=7.6e-09 Score=101.26 Aligned_cols=174 Identities=11% Similarity=-0.006 Sum_probs=139.7
Q ss_pred HHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhh
Q 041183 530 EDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDL 608 (760)
Q Consensus 530 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 608 (760)
+.....+....+.+...+..+...+.+.|++++|...|++..+ ..| +...+..+...+...|++++|...++.+..
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~- 179 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL- 179 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch-
Confidence 3444444444444555677788888899999999999999988 567 456777888899999999999999998876
Q ss_pred cCCCCChhHHHH-HHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC--chh
Q 041183 609 HGLIPQLEHYAC-IVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDN--EST 683 (760)
Q Consensus 609 ~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~ 683 (760)
..|+...... ....+.+.++.++|...+++.- .+.+...+..+...+...|++++|+..++++++.+|++ ..+
T Consensus 180 --~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 180 --QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp --GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred --hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 3455433322 3334667788888888888772 45678899999999999999999999999999999987 889
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 041183 684 YVLLSNLYASAGMWNDVGKLRKEMK 708 (760)
Q Consensus 684 ~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (760)
+..++.++...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999999988754
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.01 E-value=6.1e-09 Score=100.66 Aligned_cols=202 Identities=10% Similarity=0.004 Sum_probs=144.7
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC---chHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-C---hHh
Q 041183 476 VNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQD---IFVESAVIDMYCKCGTIEDAKRAFRKIC--RD-S---LAG 546 (760)
Q Consensus 476 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~---~~~ 546 (760)
.+...+..+...+...|+++.|...|+.+.+... .+ ...+..+..+|.+.|++++|...|++.. .| + ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3456677778888999999999999999998652 23 5778889999999999999999999874 22 1 336
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhH
Q 041183 547 WNAMMMGYAQ--------HGCYHEVSNLFNKMSKFGVKPDEI-TYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEH 617 (760)
Q Consensus 547 ~~~l~~~~~~--------~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 617 (760)
+..+..++.. .|++++|+..|+++.+ ..|+.. ....+ ..+..+... -...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 7778888888 9999999999999998 456542 22111 111111110 0112
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhc----------CChhHHHHHHHHHhccCCCCch
Q 041183 618 YACIVDLLGRVGLLEGAKMTIDQMP-IPP----DAHIWQSLLSACTIY----------GNIDLGLLAGSKLLELQPDNES 682 (760)
Q Consensus 618 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~~~ 682 (760)
+..++..|.+.|++++|+..|+++- ..| ....+..+..++... |++++|+..++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 4567778888888888888888761 222 345677777777765 8899999999999999998754
Q ss_pred ---hHHHHHHHHHhcCChhH
Q 041183 683 ---TYVLLSNLYASAGMWND 699 (760)
Q Consensus 683 ---~~~~l~~~~~~~g~~~~ 699 (760)
+...+..++.+.|++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 44455555555555444
No 97
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.01 E-value=1.2e-07 Score=96.98 Aligned_cols=88 Identities=9% Similarity=-0.133 Sum_probs=40.6
Q ss_pred HHHHhcCCccHHHHHHHHHHHCCCCCCHh----hHHHHHHHhcCcCCHHHHHHHHHHHHHhCCC-CC----hhHHHHHHH
Q 041183 350 AGYSENGFFNQALDMFCHMLEFSLIPNGY----TMASILEAVSNSKSLKQAMQVHSHIIKSGFL-LD----DSMISCLIT 420 (760)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~ 420 (760)
..+...|++++|...+++........+.. .+..+...+...|++++|...+++....... .+ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445566666666666655532111111 2333444455556666666666555432110 01 112334444
Q ss_pred HHHhcCChHHHHHHHhh
Q 041183 421 TYGKCNALNESKRVLSE 437 (760)
Q Consensus 421 ~~~~~~~~~~A~~~~~~ 437 (760)
.+...|++++|...+++
T Consensus 102 ~~~~~G~~~~A~~~~~~ 118 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEK 118 (373)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 55555555555555543
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.96 E-value=1.4e-08 Score=93.94 Aligned_cols=156 Identities=9% Similarity=0.006 Sum_probs=81.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---ChHhHHH----------------HHHHHHHcCCHHHHHHHHHHHHHCCCCC-
Q 041183 518 AVIDMYCKCGTIEDAKRAFRKICRD---SLAGWNA----------------MMMGYAQHGCYHEVSNLFNKMSKFGVKP- 577 (760)
Q Consensus 518 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~m~~~g~~p- 577 (760)
.....+...|++++|...|+..... +...|.. +..+|.+.|++++|+..|++..+ ..|
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~ 86 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAPN 86 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCC
Confidence 3444556667777777777665422 2234444 55566666666666666666665 344
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHhhhcCC--hHHHHHHHHhCC-CCCCHHHHHHH
Q 041183 578 DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIP-QLEHYACIVDLLGRVGL--LEGAKMTIDQMP-IPPDAHIWQSL 653 (760)
Q Consensus 578 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~-~~p~~~~~~~l 653 (760)
+...+..+...+...|++++|...|+++.+ ..| +...+..+..+|...|+ .+.+...++... ..|....+..+
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 163 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRD 163 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 335555555566666666666666666655 223 34555555555544432 233444444442 11122233334
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCC
Q 041183 654 LSACTIYGNIDLGLLAGSKLLELQP 678 (760)
Q Consensus 654 ~~~~~~~~~~~~A~~~~~~~~~~~p 678 (760)
..++...|++++|+..|++++++.|
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCC
Confidence 4445555666666666666666666
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.96 E-value=1.4e-08 Score=99.44 Aligned_cols=153 Identities=8% Similarity=-0.038 Sum_probs=129.6
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHH-
Q 041183 578 DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP-IPPDAHIWQSLLS- 655 (760)
Q Consensus 578 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~- 655 (760)
+...+..+...+...|++++|...|+.+.+ ..+-+...+..++.++.+.|++++|...++++. ..|+.........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 446677778889999999999999999988 233467889999999999999999999999984 5566554433333
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCC
Q 041183 656 ACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDS 735 (760)
Q Consensus 656 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (760)
.+...++.+.|+..++++++.+|+++..+..++.+|...|++++|+..++++.+.
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~------------------------- 248 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX------------------------- 248 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-------------------------
Confidence 3677889999999999999999999999999999999999999999999999876
Q ss_pred CCCCh--HHHHHHHHHHHHHHHhhh
Q 041183 736 SHSQS--KEIYKELIKLYEHMVATA 758 (760)
Q Consensus 736 ~~~~~--~~~~~~~~~~~~~~~~~~ 758 (760)
+|+. .+.+..+..+|..+|+.+
T Consensus 249 -~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 249 -DLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp -CTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred -ccccccchHHHHHHHHHHHcCCCC
Confidence 5666 788889999998887643
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.95 E-value=5.8e-08 Score=90.03 Aligned_cols=171 Identities=6% Similarity=-0.110 Sum_probs=133.0
Q ss_pred HHHHHHhcC-CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHhh
Q 041183 532 AKRAFRKIC-RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAG----LVREARTYLSCMS 606 (760)
Q Consensus 532 A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~ 606 (760)
|.+.|++.. ..++..+..+...|...+++++|+..|++..+.| +...+..|...|.. + ++++|...|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344444432 3455667777777778888888888888888764 45566666667776 6 8899999999887
Q ss_pred hhcCCCCChhHHHHHHHHhhh----cCChHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh----cCChhHHHHHHHHHh
Q 041183 607 DLHGLIPQLEHYACIVDLLGR----VGLLEGAKMTIDQMP-IPPD---AHIWQSLLSACTI----YGNIDLGLLAGSKLL 674 (760)
Q Consensus 607 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~----~~~~~~A~~~~~~~~ 674 (760)
+ . -++..+..|...|.. .+++++|+++|++.- ..|. +..+..|...|.. .+++++|+..++++.
T Consensus 81 ~-~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 E-A---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp H-T---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred H-C---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 6 2 256677778888876 789999999998874 3443 7888889888888 789999999999999
Q ss_pred ccCCCCchhHHHHHHHHHhc-C-----ChhHHHHHHHHHHhCC
Q 041183 675 ELQPDNESTYVLLSNLYASA-G-----MWNDVGKLRKEMKEKF 711 (760)
Q Consensus 675 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 711 (760)
+. |+++.++..|+.+|... | ++++|+.++++..+.|
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 98 66888999999999865 3 8999999999988776
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.95 E-value=6.9e-09 Score=93.21 Aligned_cols=158 Identities=12% Similarity=0.022 Sum_probs=106.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHH-
Q 041183 547 WNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDL- 624 (760)
Q Consensus 547 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~- 624 (760)
+..+...+.+.|++++|...|++..+ ..| +...+..+...+...|++++|...++.+.+ ..|+...+..+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPL---EYQDNSYKSLIAKLE 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG---GGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh---ccCChHHHHHHHHHH
Confidence 34445556666666666666666655 344 335556666666677777777777766655 22233322222211
Q ss_pred hhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC--chhHHHHHHHHHhcCChhHH
Q 041183 625 LGRVGLLEGAKMTIDQM-P-IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDN--ESTYVLLSNLYASAGMWNDV 700 (760)
Q Consensus 625 ~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A 700 (760)
+...+...+|...+++. . .+.++..+..+...+...|++++|+..++++++.+|+. +..+..++.++...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 11222333456666665 2 34468889999999999999999999999999999864 56999999999999999999
Q ss_pred HHHHHHHHh
Q 041183 701 GKLRKEMKE 709 (760)
Q Consensus 701 ~~~~~~~~~ 709 (760)
...+++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988653
No 102
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.93 E-value=1.2e-08 Score=85.35 Aligned_cols=95 Identities=9% Similarity=0.056 Sum_probs=65.5
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 041183 616 EHYACIVDLLGRVGLLEGAKMTIDQM-P-IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYAS 693 (760)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 693 (760)
..+...+..|.+.|++++|++.|++. . .+.++.+|..+..++...|++++|+..++++++++|+++.+|..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 44555666666666666666666655 1 344566677777777777777777777777777777777777777777777
Q ss_pred cCChhHHHHHHHHHHhC
Q 041183 694 AGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 694 ~g~~~~A~~~~~~~~~~ 710 (760)
.|++++|+..|++..+.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 77777777777776654
No 103
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.92 E-value=1.5e-08 Score=99.12 Aligned_cols=200 Identities=10% Similarity=0.034 Sum_probs=131.9
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHHHHc------CC-CCCchHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C-
Q 041183 478 GSTFSIVLKACAAMTDLEQGKAIHCLALKA------RY-DQDIFVESAVIDMYCKCGTIEDAKRAFRKICR-------D- 542 (760)
Q Consensus 478 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~- 542 (760)
..++..+...+...|+++.|...++++.+. +- +....++..+...|...|++++|...+.+... +
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 445666777777777777777777776653 11 22355677778888888888888888776521 1
Q ss_pred ---ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhhc---
Q 041183 543 ---SLAGWNAMMMGYAQHGCYHEVSNLFNKMSKF------GVKPD-EITYLAVLTSCCHAGLVREARTYLSCMSDLH--- 609 (760)
Q Consensus 543 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--- 609 (760)
...++..+...+...|++++|...++++.+. +-.|+ ..++..+...+...|++++|...++++.+..
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 2346778888888999999999999888763 11343 4677788889999999999999999887620
Q ss_pred ---CCCCC-hhHHHHHHHHhhhcCC------hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 041183 610 ---GLIPQ-LEHYACIVDLLGRVGL------LEGAKMTIDQMP-IPP-DAHIWQSLLSACTIYGNIDLGLLAGSKLLELQ 677 (760)
Q Consensus 610 ---~~~~~-~~~~~~l~~~~~~~g~------~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 677 (760)
...+. ...+..+...+...+. +.++...++... ..| ...++..+...+...|++++|...++++++..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 12232 3344444444433332 444445555543 223 34578889999999999999999999998753
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.91 E-value=5.4e-09 Score=115.70 Aligned_cols=169 Identities=8% Similarity=-0.092 Sum_probs=111.9
Q ss_pred HhcCCHHHHHHHHHhcC-----------CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 041183 524 CKCGTIEDAKRAFRKIC-----------RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCH 591 (760)
Q Consensus 524 ~~~~~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~ 591 (760)
...|++++|.+.+++.. ..+...|..+...+.+.|++++|+..|+++.+ ..| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 56677777777776654 33445666777777777777777777777776 345 34566666667777
Q ss_pred cCcHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHH
Q 041183 592 AGLVREARTYLSCMSDLHGLIP-QLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLL 668 (760)
Q Consensus 592 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~ 668 (760)
.|++++|...|+++.+ ..| +...+..+..+|.+.|++++ ++.|+++- .+.+...|..+..++...|++++|++
T Consensus 480 ~g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777766 333 45666777777777777777 77776652 34456667777777777777777777
Q ss_pred HHHHHhccCCCCchhHHHHHHHHHhcCChh
Q 041183 669 AGSKLLELQPDNESTYVLLSNLYASAGMWN 698 (760)
Q Consensus 669 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 698 (760)
.++++++++|++..++..++.++...|+.+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~ 585 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTS 585 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC------
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCC
Confidence 777777777777777777777776666533
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.90 E-value=3.3e-08 Score=91.43 Aligned_cols=156 Identities=6% Similarity=-0.084 Sum_probs=90.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHH----------------HHHHHhccCcHHHHHHHHHHhhhhcCCC
Q 041183 550 MMMGYAQHGCYHEVSNLFNKMSKFGVKPDE-ITYLA----------------VLTSCCHAGLVREARTYLSCMSDLHGLI 612 (760)
Q Consensus 550 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 612 (760)
....+...|++++|+..|++..+ ..|+. ..+.. +..++.+.|++++|...|+.+.+ -.+
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p 85 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAP 85 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCC
Confidence 34455566777777777777666 44533 34444 56666677777777777777666 122
Q ss_pred CChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHhccCCCCchhHHHHH
Q 041183 613 PQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGN--IDLGLLAGSKLLELQPDNESTYVLLS 688 (760)
Q Consensus 613 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~ 688 (760)
-+...+..++.++...|++++|+..|+++- .+.++.+|..+...+...|+ .+.+...++++....| ....+..++
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g 164 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDG 164 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHH
Confidence 345666667777777777777777776662 33445666666666544432 3444555555543333 223455566
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 041183 689 NLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 689 ~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
.++...|++++|+..|++..+.
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 6666677777777777766544
No 106
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.89 E-value=3.7e-08 Score=83.69 Aligned_cols=131 Identities=19% Similarity=0.207 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHh
Q 041183 546 GWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLL 625 (760)
Q Consensus 546 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 625 (760)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++.+.+ ..+.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH--HCCCchHHHHHHHHHH
Confidence 45667777788888888888888887642 22456677777778888888888888888876 2344566777888888
Q ss_pred hhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 041183 626 GRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPD 679 (760)
Q Consensus 626 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 679 (760)
...|++++|.++++++. .+.+...+..++..+...|++++|...++++++..|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 88888888888888772 3456778888888999999999999999999988884
No 107
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.88 E-value=5.8e-09 Score=90.31 Aligned_cols=97 Identities=13% Similarity=0.012 Sum_probs=83.2
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHH
Q 041183 614 QLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLY 691 (760)
Q Consensus 614 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 691 (760)
+...+..+...+.+.|++++|...|++.- .+.+...|..+..++...|++++|+..++++++++|+++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 45666777888888888888888888762 4557888888999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 041183 692 ASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 692 ~~~g~~~~A~~~~~~~~~~ 710 (760)
...|++++|+..|++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.87 E-value=2.1e-08 Score=109.05 Aligned_cols=159 Identities=13% Similarity=0.031 Sum_probs=123.9
Q ss_pred cCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHH
Q 041183 526 CGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTY 601 (760)
Q Consensus 526 ~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 601 (760)
.|++++|...|++.. +.+...|..+...+.+.|++++|.+.|++..+ ..| +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999998875 33566889999999999999999999999998 566 467888888999999999999999
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHhcc
Q 041183 602 LSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIY---GNIDLGLLAGSKLLEL 676 (760)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~ 676 (760)
++++.+ -.+.+...+..+..+|.+.|++++|.+.+++.- .+.+...+..+...+... |++++|.+.++++++.
T Consensus 80 ~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASD--AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999988 233457889999999999999999999999872 345678889999999999 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 041183 677 QPDNESTYVLLS 688 (760)
Q Consensus 677 ~p~~~~~~~~l~ 688 (760)
+|++...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 998888888776
No 109
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.86 E-value=1.3e-08 Score=87.90 Aligned_cols=100 Identities=6% Similarity=-0.101 Sum_probs=86.7
Q ss_pred CCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHH
Q 041183 611 LIP-QLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLL 687 (760)
Q Consensus 611 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 687 (760)
+.| +...+..+...+.+.|++++|...|+++- .+.++..|..+..++...|++++|+..|+++++++|+++.++..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 444 34667777888888888888888888772 455788999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 041183 688 SNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 688 ~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
+.+|...|++++|+..|++..+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999998875
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.86 E-value=2.6e-08 Score=89.36 Aligned_cols=150 Identities=15% Similarity=0.079 Sum_probs=118.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHH-HH
Q 041183 581 TYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP-IPPDAHIWQSLLSA-CT 658 (760)
Q Consensus 581 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~-~~ 658 (760)
.+..+...+...|++++|...|+.+.+ ..+.+...+..+..++.+.|++++|...++++. ..|++..+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHH
Confidence 345566778899999999999999887 233457889999999999999999999999984 44555444333222 22
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCC
Q 041183 659 IYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHS 738 (760)
Q Consensus 659 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (760)
..++...|+..++++++.+|+++..+..++.++...|++++|...++++.+. +|
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------------------------~p 139 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKV--------------------------NL 139 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------------------------CT
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------------------------Cc
Confidence 3344556899999999999999999999999999999999999999999876 44
Q ss_pred Ch--HHHHHHHHHHHHHHHhhh
Q 041183 739 QS--KEIYKELIKLYEHMVATA 758 (760)
Q Consensus 739 ~~--~~~~~~~~~~~~~~~~~~ 758 (760)
+. .+.+..++.+|..+|+.+
T Consensus 140 ~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 140 GAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp TTTTTHHHHHHHHHHHHHCSSC
T ss_pred ccChHHHHHHHHHHHHHhCCCC
Confidence 33 457778888888877654
No 111
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.83 E-value=2.6e-08 Score=83.33 Aligned_cols=114 Identities=11% Similarity=-0.054 Sum_probs=94.4
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHH
Q 041183 575 VKPDE-ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQ 651 (760)
Q Consensus 575 ~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~ 651 (760)
+.|+. ..+......+.+.|++++|++.|+++.+ -.+.+...|..+..+|.+.|++++|++.+++.- .+.+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 55643 5666677788888888888888888877 234457788888888888899999988888772 456688999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 041183 652 SLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNL 690 (760)
Q Consensus 652 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 690 (760)
.+..++...|++++|++.++++++++|+++.++..++.+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999999999999888765
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.82 E-value=3.4e-08 Score=97.85 Aligned_cols=218 Identities=12% Similarity=-0.018 Sum_probs=145.5
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhc-cCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHH
Q 041183 456 ASCHAEALELYRTIWGSCREVNGSTFSIVLKACAA-MTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKR 534 (760)
Q Consensus 456 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 534 (760)
.|++++|.+++++..+.... . +.. .++++.|...|..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 45566666666665442111 0 111 35666666665544 345666777777777
Q ss_pred HHHhcCC-----CC----hHhHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCcHHHHHH
Q 041183 535 AFRKICR-----DS----LAGWNAMMMGYAQHGCYHEVSNLFNKMSKFG---VKPD--EITYLAVLTSCCHAGLVREART 600 (760)
Q Consensus 535 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---~~p~--~~~~~~l~~~~~~~g~~~~A~~ 600 (760)
.|.+... .+ ..+|+.+...|.+.|++++|+..|++..+.- -.|. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7765421 11 2367788888888899999999888876521 1122 3567777788888 99999999
Q ss_pred HHHHhhhhcC---CCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHH
Q 041183 601 YLSCMSDLHG---LIP-QLEHYACIVDLLGRVGLLEGAKMTIDQMP----IPPD----AHIWQSLLSACTIYGNIDLGLL 668 (760)
Q Consensus 601 ~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~A~~ 668 (760)
.|++..+... ..+ ...++..+..+|.+.|++++|++.+++.- ..++ ...+..++..+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998876211 111 14678889999999999999999998772 1122 2356667777788899999999
Q ss_pred HHHHHhccCCCCch-----hHHHHHHHHHhcCChhHHHH
Q 041183 669 AGSKLLELQPDNES-----TYVLLSNLYASAGMWNDVGK 702 (760)
Q Consensus 669 ~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~ 702 (760)
.+++++ +.|.... ....++.++ ..|+.+.+..
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 9886443 244555555 5677766655
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.80 E-value=1.2e-06 Score=85.07 Aligned_cols=210 Identities=10% Similarity=0.075 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcC--CHHHHHHHHHhcC---CCChHhHHHHHHHH----HHc---CCHHH
Q 041183 495 EQGKAIHCLALKARYDQDIFVESAVIDMYCKCG--TIEDAKRAFRKIC---RDSLAGWNAMMMGY----AQH---GCYHE 562 (760)
Q Consensus 495 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~---~~~~~~~~~l~~~~----~~~---~~~~~ 562 (760)
++|....+.++..+ +-+..+|+.-...+...| +++++++.++.+. +.+..+|+.-...+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 44555555555544 223444444445555555 5666666665553 23333444433333 333 56667
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHH--HHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCC------hHH
Q 041183 563 VSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVR--EARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGL------LEG 633 (760)
Q Consensus 563 a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~ 633 (760)
++.+++++.+ ..| +...++.-...+.+.|.++ ++++.++.+.+ ..+-|...|+.-..++.+.|+ +++
T Consensus 129 EL~~~~~~l~--~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 129 EFDILEAMLS--SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 7777777766 344 4455555555555556665 67777777766 233345555555555555554 666
Q ss_pred HHHHHHhC--CCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHhccC---CCCchhHHHHHHHHHhcCChhHHHHHHHHH
Q 041183 634 AKMTIDQM--PIPPDAHIWQSLLSACTIYGNI-DLGLLAGSKLLELQ---PDNESTYVLLSNLYASAGMWNDVGKLRKEM 707 (760)
Q Consensus 634 A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (760)
+++.++++ ..+-|...|+.+...+.+.|+. +.+..+.+++.+++ |.++.++..++.+|.+.|+.++|+++++++
T Consensus 205 El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 77776665 2455677777777777666663 33556666666665 667777777777777777888888777777
Q ss_pred Hh
Q 041183 708 KE 709 (760)
Q Consensus 708 ~~ 709 (760)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 114
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.78 E-value=2.1e-08 Score=86.26 Aligned_cols=96 Identities=11% Similarity=-0.047 Sum_probs=83.3
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 041183 615 LEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYA 692 (760)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 692 (760)
...+..+...+.+.|++++|...|++.- .+.+...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4556667777888888888888888772 45578888999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 041183 693 SAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 693 ~~g~~~~A~~~~~~~~~~ 710 (760)
..|++++|+..+++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 115
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.78 E-value=4.4e-08 Score=82.20 Aligned_cols=119 Identities=13% Similarity=0.024 Sum_probs=96.2
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 041183 615 LEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYA 692 (760)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 692 (760)
...+..++..+.+.|++++|+..|++.- .+.+...|..+..++...|++++|+..++++++++|+++.++..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3456677777888888888888888762 45567889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHHHHHHHHHH
Q 041183 693 SAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYKELIKLYEH 753 (760)
Q Consensus 693 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (760)
..|++++|+..+++..+.... ....|+..++...+.++..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~--------------------~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAE--------------------VNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH--------------------HHTTTTHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcc--------------------cCCchhHHHHHHHHHHHHHh
Confidence 999999999999998765210 01237788888888777654
No 116
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.78 E-value=2e-07 Score=91.65 Aligned_cols=164 Identities=11% Similarity=-0.047 Sum_probs=122.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCC----hh
Q 041183 546 GWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPD-E----ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQ----LE 616 (760)
Q Consensus 546 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~ 616 (760)
.+...+..+...|++++|.+.+++..+.....+ . ..+..+...+...|++++|...++.+.+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344566778888999999999988877432211 1 22334555677888999999999988752111112 35
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC------Cc
Q 041183 617 HYACIVDLLGRVGLLEGAKMTIDQMP----IPPD-----AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPD------NE 681 (760)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~ 681 (760)
+++.++..|...|++++|..+++++. ..|+ ..++..++..|...|++++|+..+++++++.++ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78889999999999999999998762 1222 258889999999999999999999999986532 26
Q ss_pred hhHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 041183 682 STYVLLSNLYASAGMWNDV-GKLRKEMKE 709 (760)
Q Consensus 682 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 709 (760)
.+|..++.+|...|++++| ..++++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7899999999999999999 777887653
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.77 E-value=7.7e-07 Score=87.39 Aligned_cols=161 Identities=11% Similarity=-0.005 Sum_probs=121.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCC----hhHHH
Q 041183 549 AMMMGYAQHGCYHEVSNLFNKMSKFGV-KPDEI----TYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQ----LEHYA 619 (760)
Q Consensus 549 ~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ 619 (760)
..+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...++.+.+...-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888999999999998877321 22211 2334566677788999999999998872112223 23688
Q ss_pred HHHHHhhhcCChHHHHHHHHhCC-----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------chhH
Q 041183 620 CIVDLLGRVGLLEGAKMTIDQMP-----IPPD----AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDN------ESTY 684 (760)
Q Consensus 620 ~l~~~~~~~g~~~~A~~~~~~~~-----~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~ 684 (760)
.++.+|...|++++|..+++++- .+.+ ..++..+...|...|++++|+..+++++++.+.. +.+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999998888762 1112 3377889999999999999999999999865432 6789
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHh
Q 041183 685 VLLSNLYASAGM-WNDVGKLRKEMKE 709 (760)
Q Consensus 685 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 709 (760)
..++.+|.+.|+ +++|...+++..+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999998754
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.77 E-value=1.1e-07 Score=88.54 Aligned_cols=126 Identities=6% Similarity=-0.096 Sum_probs=77.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhh
Q 041183 547 WNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLG 626 (760)
Q Consensus 547 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 626 (760)
+..+...+...|++++|+..|++.. .|+...+..+...+...|++++|...++.+.+. .+.+...+..++.+|.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHH
Confidence 4455566666777777777776552 456666666666677777777777777776651 2334556666666666
Q ss_pred hcCChHHHHHHHHhCC--CCCC----------------HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 041183 627 RVGLLEGAKMTIDQMP--IPPD----------------AHIWQSLLSACTIYGNIDLGLLAGSKLLELQP 678 (760)
Q Consensus 627 ~~g~~~~A~~~~~~~~--~~p~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 678 (760)
..|++++|.+.++++. .+.+ ...+..+...+...|++++|...+++++++.|
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 6666666666666551 1111 24556666666666666666666666666666
No 119
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.76 E-value=3.3e-08 Score=97.91 Aligned_cols=196 Identities=11% Similarity=-0.016 Sum_probs=150.3
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh-cCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHH
Q 041183 490 AMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCK-CGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFN 568 (760)
Q Consensus 490 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 568 (760)
..|++++|.+++++..+... .. +.+ .+++++|...|.. ....|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence 35778889999988876432 11 122 5788888888765 4667888999999999999
Q ss_pred HHHHCCC---CC-C-HHHHHHHHHHHhccCcHHHHHHHHHHhhhhc---CCCC-ChhHHHHHHHHhhhcCChHHHHHHHH
Q 041183 569 KMSKFGV---KP-D-EITYLAVLTSCCHAGLVREARTYLSCMSDLH---GLIP-QLEHYACIVDLLGRVGLLEGAKMTID 639 (760)
Q Consensus 569 ~m~~~g~---~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 639 (760)
+..+... .+ . ..+|..+...|...|++++|+..|++..+-. +... ...++..+..+|.. |++++|++.++
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 8776311 11 1 3578888889999999999999999887621 1111 14678889999988 99999999998
Q ss_pred hCC----C--CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc------hhHHHHHHHHHhcCChhHHHHHHH
Q 041183 640 QMP----I--PP--DAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNE------STYVLLSNLYASAGMWNDVGKLRK 705 (760)
Q Consensus 640 ~~~----~--~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~ 705 (760)
+.- . .+ ...++..+...+...|++++|+..+++++++.|++. ..+..++.++...|++++|+..++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 772 1 11 145788899999999999999999999999866442 377788889999999999999999
Q ss_pred HHH
Q 041183 706 EMK 708 (760)
Q Consensus 706 ~~~ 708 (760)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 887
No 120
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.76 E-value=7.9e-08 Score=81.39 Aligned_cols=96 Identities=11% Similarity=0.044 Sum_probs=57.3
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 041183 615 LEHYACIVDLLGRVGLLEGAKMTIDQM-P-IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYA 692 (760)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 692 (760)
...+..++..+.+.|++++|...+++. . .+.+..++..+...+...|++++|+..++++++..|+++.++..++.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 344555555555566666666555554 2 22345556666666666666666666666666666666666666666666
Q ss_pred hcCChhHHHHHHHHHHhC
Q 041183 693 SAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 693 ~~g~~~~A~~~~~~~~~~ 710 (760)
..|++++|...+++..+.
T Consensus 96 ~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHh
Confidence 666666666666665543
No 121
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.76 E-value=6.7e-08 Score=86.82 Aligned_cols=144 Identities=8% Similarity=-0.031 Sum_probs=108.1
Q ss_pred HhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH-HHhcCCh--
Q 041183 589 CCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSA-CTIYGNI-- 663 (760)
Q Consensus 589 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~-~~~~~~~-- 663 (760)
+...|++++|...++...+ ..+.+...+..++.+|...|++++|...++++- .+.+...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 3456778888888887776 234456778888888888888888888888762 34567778888888 7788998
Q ss_pred hHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHH
Q 041183 664 DLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEI 743 (760)
Q Consensus 664 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (760)
++|+..++++++..|+++.++..++.+|...|++++|...+++..+... .++....+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----------------------~~~~~~~~ 154 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS-----------------------PRINRTQL 154 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-----------------------TTSCHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC-----------------------CCccHHHH
Confidence 9999999999999999999999999999999999999999999876532 24566677
Q ss_pred HHHHHHHHHHHHhh
Q 041183 744 YKELIKLYEHMVAT 757 (760)
Q Consensus 744 ~~~~~~~~~~~~~~ 757 (760)
...+.+..+..+.+
T Consensus 155 ~~~i~~~~~~~~~~ 168 (177)
T 2e2e_A 155 VESINMAKLLQRRS 168 (177)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC
Confidence 77777766655543
No 122
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.73 E-value=2.1e-07 Score=101.24 Aligned_cols=147 Identities=12% Similarity=-0.023 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHH
Q 041183 558 GCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKM 636 (760)
Q Consensus 558 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 636 (760)
|++++|.+.|++..+ ..| +...+..+...+...|++++|.+.+++..+ -.+.+...+..+..+|...|++++|.+
T Consensus 3 g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 3 ADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 344444444444443 233 233444444444444444444444444443 111223444444444444444444444
Q ss_pred HHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhc---CChhHHHHHHHHHH
Q 041183 637 TIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASA---GMWNDVGKLRKEMK 708 (760)
Q Consensus 637 ~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~ 708 (760)
.+++.- .+.+...+..+...+...|++++|.+.+++++++.|+++.++..++.++... |++++|...+++..
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 444431 2223444444444444444444444444444444444444444444444444 44444444444443
No 123
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.72 E-value=8.9e-08 Score=80.72 Aligned_cols=115 Identities=14% Similarity=0.020 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 041183 580 ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSAC 657 (760)
Q Consensus 580 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 657 (760)
..+..+...+...|+++.|...++.+.+. .+.+...+..++.++...|++++|.+.+++.. .+.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34444445555555555555555555541 22234444444555555555555555544441 222344444444445
Q ss_pred HhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCC
Q 041183 658 TIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGM 696 (760)
Q Consensus 658 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 696 (760)
...|++++|...++++++..|+++.++..++.++...|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 555555555555555555555444455555554444444
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.72 E-value=4.3e-08 Score=95.49 Aligned_cols=191 Identities=10% Similarity=-0.016 Sum_probs=126.9
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 041183 512 DIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLT 587 (760)
Q Consensus 512 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~ 587 (760)
+...+..+...+...|++++|...|+... +.+...|..+..+|.+.|++++|+..+++..+ ..| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 34556666777777777777777777653 33566777788888888888888888888877 456 4567777778
Q ss_pred HHhccCcHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 041183 588 SCCHAGLVREARTYLSCMSDLHGLIPQ-LEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQSLLSACTIYGNIDLG 666 (760)
Q Consensus 588 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 666 (760)
++...|++++|...|+.+.+ ..|+ ...+...+....+..+...... ......+++......+... ..|++++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS---LAKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HHHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 88888888888888888776 2221 1111112222222111111111 2222334444444444332 36899999
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHHhc-CChhHHHHHHHHHHhC
Q 041183 667 LLAGSKLLELQPDNESTYVLLSNLYASA-GMWNDVGKLRKEMKEK 710 (760)
Q Consensus 667 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 710 (760)
++.++++++++|++......+...+.+. +.+++|.++|++..+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999998888888888777777 7799999999987653
No 125
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.70 E-value=6e-07 Score=84.13 Aligned_cols=184 Identities=9% Similarity=-0.077 Sum_probs=131.1
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--CchHHHHHHHHHHhcCCHHHHHHHHHhcC--CCC-hH---hHH
Q 041183 477 NGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQ--DIFVESAVIDMYCKCGTIEDAKRAFRKIC--RDS-LA---GWN 548 (760)
Q Consensus 477 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~---~~~ 548 (760)
+...+..+...+...|+++.|...|+.+.+..... ....+..+..+|.+.|++++|...|+++. .|+ .. .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34455666778899999999999999999865321 13577888999999999999999999874 232 21 455
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHhhhhc
Q 041183 549 AMMMGYAQ------------------HGCYHEVSNLFNKMSKFGVKPDEIT-YLAVLTSCCHAGLVREARTYLSCMSDLH 609 (760)
Q Consensus 549 ~l~~~~~~------------------~~~~~~a~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 609 (760)
.+..++.. .|++++|+..|+++.+ ..|+... ...... ...+...+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~----------l~~~~~~~~~-- 148 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKR----------LVFLKDRLAK-- 148 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHH----------HHHHHHHHHH--
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHH----------HHHHHHHHHH--
Confidence 55556554 5789999999999998 5676532 211110 0011111111
Q ss_pred CCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 041183 610 GLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP-IPPD----AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNE 681 (760)
Q Consensus 610 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 681 (760)
....++..|.+.|++++|+..|+++- ..|+ ...+..+..++.+.|++++|.+.++.+....|++.
T Consensus 149 -------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 149 -------YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -------HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 12356778889999999999999872 2333 25688889999999999999999999999888654
No 126
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.69 E-value=1.5e-05 Score=83.87 Aligned_cols=338 Identities=9% Similarity=-0.020 Sum_probs=182.3
Q ss_pred CChHHHHHHHhcCCC--CCeeeHHHHHHHHHhcCC-ccHHHHHHHHHHHC-CCCC-CHhhHHHHHHHhcC----cCCHHH
Q 041183 325 GQVNDARSIFDYLIF--KDSVSWNSMIAGYSENGF-FNQALDMFCHMLEF-SLIP-NGYTMASILEAVSN----SKSLKQ 395 (760)
Q Consensus 325 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~-~~~p-~~~~~~~ll~~~~~----~~~~~~ 395 (760)
|+++.+..+|++... |++..|...+.-..+.++ .+....+|+..... |..| +...|...+..+.. .++.+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 667777777776632 566666666665555542 34555666665543 3323 44555555555432 345667
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHh-------------cCChHHHHHHHhhcCC----CCcccHHHHHHHHHhcC-
Q 041183 396 AMQVHSHIIKSGFLLDDSMISCLITTYGK-------------CNALNESKRVLSEIDK----KNAVHINALASVLVYAS- 457 (760)
Q Consensus 396 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~- 457 (760)
+..+|+..+......-...|......-.. .+.+..|..+++.+.. .+...|...+.--...+
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 77777777653211111122111111000 0112222322222211 12224444333322211
Q ss_pred -C-----hhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHH
Q 041183 458 -C-----HAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIED 531 (760)
Q Consensus 458 -~-----~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 531 (760)
- .+.+..+|+++.... +.+...|...+.-+...|+.+.|..++++.... +.+...+.. |....+.++
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~ 260 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEA 260 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTH
T ss_pred cCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhH
Confidence 1 234567888877653 344666777777777888999999999988887 344433332 222211111
Q ss_pred H-HHHHHhcC--C-------C---ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCcHHH
Q 041183 532 A-KRAFRKIC--R-------D---SLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCC-HAGLVRE 597 (760)
Q Consensus 532 A-~~~~~~~~--~-------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~g~~~~ 597 (760)
. ..+.+... . + ....|...+..+.+.+..+.|..+|+++ .. ..++...|......-. ..++.+.
T Consensus 261 ~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ 338 (493)
T 2uy1_A 261 VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRAT 338 (493)
T ss_dssp HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHH
Confidence 1 11111110 0 0 1134666666666777788888888888 31 1123333332121111 1236888
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 041183 598 ARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLE 675 (760)
Q Consensus 598 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 675 (760)
|..+|+...+. .+-++..+...++...+.|+.+.|..+|+++. .....|...+.--...|+.+.+..+++++..
T Consensus 339 ar~ife~al~~--~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 339 PYNIFSSGLLK--HPDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888773 22234556667777778888888888888874 3567788777777778888888888887775
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.69 E-value=2e-07 Score=82.57 Aligned_cols=127 Identities=7% Similarity=-0.070 Sum_probs=97.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 041183 581 TYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACT 658 (760)
Q Consensus 581 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 658 (760)
.+..+...+...|+++.|...|+...+ ..+.+...+..++.++...|++++|.+.+++.- .+.+...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 445555666677777777777777766 123356667777777777778888777777662 3456778888999999
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHHHHHHH--HHhcCChhHHHHHHHHHHh
Q 041183 659 IYGNIDLGLLAGSKLLELQPDNESTYVLLSNL--YASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 659 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 709 (760)
..|++++|...+++++++.|++...+..+..+ +...|++++|+..+++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999998888555544 8889999999999887654
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.68 E-value=2.3e-07 Score=77.31 Aligned_cols=112 Identities=21% Similarity=0.165 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 041183 580 ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSAC 657 (760)
Q Consensus 580 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 657 (760)
..+..+...+...|+++.|...++.+.+. .+.+...+..++..+.+.|++++|..+++++. .+.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 44555555666666666666666666551 22334455555555555556655555555541 233445555555555
Q ss_pred HhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 041183 658 TIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYAS 693 (760)
Q Consensus 658 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 693 (760)
...|++++|...++++++..|+++..+..++.++..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 555555555555555555555555555555555444
No 129
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.66 E-value=8.6e-08 Score=90.56 Aligned_cols=123 Identities=9% Similarity=-0.124 Sum_probs=77.0
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCH----HHHHHHHHHHHhc
Q 041183 585 VLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDA----HIWQSLLSACTIY 660 (760)
Q Consensus 585 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~ 660 (760)
+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|++ .++..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 34456666777777777766654 2233224455555666777777777777655322322 3566666677777
Q ss_pred CChhHHHHHHHHHhccC--CC-CchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 661 GNIDLGLLAGSKLLELQ--PD-NESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 661 ~~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
|++++|+..|+++.... |. .+.....++.++.+.|+.++|...|+++...
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 77777777777776432 43 3446677777777777777777777777665
No 130
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.66 E-value=1.9e-06 Score=79.75 Aligned_cols=172 Identities=10% Similarity=-0.103 Sum_probs=122.2
Q ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCC-CChHhHHHHHHHHHHcC----CHHHHHHHHHHHH
Q 041183 497 GKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICR-DSLAGWNAMMMGYAQHG----CYHEVSNLFNKMS 571 (760)
Q Consensus 497 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~ 571 (760)
|.++|++..+.| ++..+..+...|...+++++|..+|++... .+...+..|...|.. + ++++|++.|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 445555555543 455666666777777777777777776643 345566666666666 5 7888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhhhhcCCCCC---hhHHHHHHHHhhh----cCChHHHHHHHHh
Q 041183 572 KFGVKPDEITYLAVLTSCCH----AGLVREARTYLSCMSDLHGLIPQ---LEHYACIVDLLGR----VGLLEGAKMTIDQ 640 (760)
Q Consensus 572 ~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 640 (760)
+.| +...+..|...|.. .+++++|..+|+...+ ..|+ +..+..|...|.. .+++++|+.+|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 754 45566666667766 7888899998888876 3332 6677788888877 7789999999888
Q ss_pred CC-CCCCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHhccCC
Q 041183 641 MP-IPPDAHIWQSLLSACTIY-G-----NIDLGLLAGSKLLELQP 678 (760)
Q Consensus 641 ~~-~~p~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~~~~~~p 678 (760)
.- .++++..+..|...|... | +.++|...++++.+..+
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 73 335666777787777653 3 89999999999988764
No 131
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.66 E-value=1.2e-07 Score=83.89 Aligned_cols=108 Identities=11% Similarity=-0.090 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 041183 579 EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSA 656 (760)
Q Consensus 579 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 656 (760)
...+..+...+...|++++|+..|+.+.+ -.+.+...|..+..+|.+.|++++|+..+++.- .+.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34555566666667777777777776665 122245566666666666666666666666551 23345566666666
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCchhHHHHH
Q 041183 657 CTIYGNIDLGLLAGSKLLELQPDNESTYVLLS 688 (760)
Q Consensus 657 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 688 (760)
+...|++++|+..+++++++.|+++..+...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 66666666666666666666666665544443
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.65 E-value=1.3e-07 Score=94.73 Aligned_cols=94 Identities=14% Similarity=0.007 Sum_probs=80.9
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 041183 615 LEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYA 692 (760)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 692 (760)
...|..+..+|.+.|++++|+..++++- .+.+...|..+..++...|++++|+..|+++++++|++..++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3567778888888888888888888772 45578889999999999999999999999999999999999999999999
Q ss_pred hcCChhHH-HHHHHHHH
Q 041183 693 SAGMWNDV-GKLRKEMK 708 (760)
Q Consensus 693 ~~g~~~~A-~~~~~~~~ 708 (760)
..|++++| ...+++|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 45666654
No 133
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.65 E-value=2.6e-07 Score=78.76 Aligned_cols=98 Identities=10% Similarity=-0.035 Sum_probs=84.5
Q ss_pred CChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 041183 613 PQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNL 690 (760)
Q Consensus 613 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 690 (760)
.+...+..++..+...|++++|...|++.- .+.+...|..+...+...|++++|+..+++++++.|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 456677778888888888888888887762 345678889999999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 041183 691 YASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 691 ~~~~g~~~~A~~~~~~~~~~ 710 (760)
|...|++++|+..+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999998765
No 134
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.64 E-value=3.2e-07 Score=76.42 Aligned_cols=95 Identities=22% Similarity=0.255 Sum_probs=59.5
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 041183 616 EHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYAS 693 (760)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 693 (760)
..+..++..+...|++++|.+.++++. .+.+..++..+...+...|++++|+..++++.+..|+++.++..++.+|..
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 455556666666666666666666552 233455666666666666666666666666666666666666666666666
Q ss_pred cCChhHHHHHHHHHHhC
Q 041183 694 AGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 694 ~g~~~~A~~~~~~~~~~ 710 (760)
.|++++|...++++.+.
T Consensus 90 ~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 90 QGDYDEAIEYYQKALEL 106 (125)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh
Confidence 66666666666665543
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.64 E-value=2.9e-07 Score=77.49 Aligned_cols=93 Identities=14% Similarity=0.062 Sum_probs=43.4
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhc
Q 041183 617 HYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASA 694 (760)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 694 (760)
.+..++..+...|++++|...+++.. .+.+...+..+...+...|++++|+..++++++..|+++.++..++.++...
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSL 93 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHh
Confidence 34444444444444444444444431 2223444444444444444444555444444444444444444444444444
Q ss_pred CChhHHHHHHHHHHh
Q 041183 695 GMWNDVGKLRKEMKE 709 (760)
Q Consensus 695 g~~~~A~~~~~~~~~ 709 (760)
|++++|...+++..+
T Consensus 94 ~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 94 NKHVEAVAYYKKALE 108 (131)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 555554444444433
No 136
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.64 E-value=6.2e-07 Score=83.27 Aligned_cols=127 Identities=10% Similarity=-0.077 Sum_probs=82.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCc
Q 041183 516 ESAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGL 594 (760)
Q Consensus 516 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~ 594 (760)
+..+...+...|++++|...|++...++...|..+...+.+.|++++|+..|++..+. .| +...+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHccc
Confidence 3445566667777777777777776666667777777777777777777777776663 34 34566666667777777
Q ss_pred HHHHHHHHHHhhhhcCCCCCh----------------hHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC
Q 041183 595 VREARTYLSCMSDLHGLIPQL----------------EHYACIVDLLGRVGLLEGAKMTIDQM-PIPPD 646 (760)
Q Consensus 595 ~~~A~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 646 (760)
+++|...|+.+.+. .+.+. ..+..++.+|.+.|++++|.+.++++ ...|+
T Consensus 87 ~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 87 YDLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 77777777777661 11122 56666777777777777777777665 33443
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.64 E-value=3e-07 Score=77.72 Aligned_cols=116 Identities=9% Similarity=-0.054 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 041183 579 EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSA 656 (760)
Q Consensus 579 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 656 (760)
...+..+...+...|++++|...|+.+.+ ..+.+...+..++.++...|++++|.+.++++. .+.+...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 45566666777777777777777777766 223356677777777777888888887777662 34567788889999
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCC
Q 041183 657 CTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGM 696 (760)
Q Consensus 657 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 696 (760)
+...|++++|...++++++..|.+...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999988764
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.62 E-value=5.5e-08 Score=89.24 Aligned_cols=148 Identities=9% Similarity=-0.063 Sum_probs=80.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCC--------------hh
Q 041183 552 MGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQ--------------LE 616 (760)
Q Consensus 552 ~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------------~~ 616 (760)
......|+++++.+.|+.-.+ ..+ ....+..+...+...|++++|...|+.+.+.....|+ ..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDE--EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ----------CCCSGGGCCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHH--HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 334444555555555543222 112 2244555666777778888888888777762111111 14
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhc
Q 041183 617 HYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASA 694 (760)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 694 (760)
.+..+..+|.+.|++++|+..+++.- .+.+...+..+..++...|++++|+..+++++++.|+++.++..++.++...
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 55666666666666666666666551 3344556666666666666666666666666666666666666666666666
Q ss_pred CChhHHH
Q 041183 695 GMWNDVG 701 (760)
Q Consensus 695 g~~~~A~ 701 (760)
|+.+++.
T Consensus 170 ~~~~~~~ 176 (198)
T 2fbn_A 170 KEARKKD 176 (198)
T ss_dssp HHHHC--
T ss_pred HHHHHHH
Confidence 6655555
No 139
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.62 E-value=2.2e-05 Score=76.04 Aligned_cols=225 Identities=6% Similarity=-0.079 Sum_probs=168.1
Q ss_pred ChhHHHHHHHHHHhCCCCCCh-hHHHHHHHHHhccC--CHHHHHHHHHHHHHcCCCCCchHHHHHHHHH----Hhc---C
Q 041183 458 CHAEALELYRTIWGSCREVNG-STFSIVLKACAAMT--DLEQGKAIHCLALKARYDQDIFVESAVIDMY----CKC---G 527 (760)
Q Consensus 458 ~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~ 527 (760)
..++|++.++.+...+ |+. ..|+.--..+...+ +++.+.++++.+.... +-+..+|+.-...+ ... +
T Consensus 48 ~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 3357888888877653 433 34666666666667 8888888888888866 34555665544444 444 7
Q ss_pred CHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCc------H
Q 041183 528 TIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYH--EVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGL------V 595 (760)
Q Consensus 528 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~------~ 595 (760)
++++++.+++.+. +.+..+|+.-...+.+.|.++ ++++.++++.+. .| |...++.-...+...|. +
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhH
Confidence 8899999998874 556678888888888888888 999999999984 55 55666665555666666 8
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHH-HHHHHHhCC-----CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 041183 596 REARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEG-AKMTIDQMP-----IPPDAHIWQSLLSACTIYGNIDLGLLA 669 (760)
Q Consensus 596 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~A~~~ 669 (760)
+++++.++.+.. ..+-|...|+.+...+.+.|+..+ +.++..+.- ...++..+..++..+.+.|+.++|+++
T Consensus 203 ~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 899999999887 345577888888888888888554 555666652 145788999999999999999999999
Q ss_pred HHHHhc-cCCCCchhHHHHHH
Q 041183 670 GSKLLE-LQPDNESTYVLLSN 689 (760)
Q Consensus 670 ~~~~~~-~~p~~~~~~~~l~~ 689 (760)
++.+.+ .+|.....|...+.
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHHh
Confidence 999997 89988777776654
No 140
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.60 E-value=3e-07 Score=81.06 Aligned_cols=87 Identities=11% Similarity=0.126 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECC
Q 041183 646 DAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGG 725 (760)
Q Consensus 646 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (760)
+..+|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|+..+++..+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------------- 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------------- 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc---------------
Confidence 34678888889999999999999999999999999999999999999999999999999998866
Q ss_pred EEEEEEcCCCCCCChH-HHHHHHHHHHHHHHhhh
Q 041183 726 YTHHFYAGDSSHSQSK-EIYKELIKLYEHMVATA 758 (760)
Q Consensus 726 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 758 (760)
+|+.. .+...+.++..+++...
T Consensus 127 -----------~p~~~~~~~~~l~~~~~~~~~~~ 149 (162)
T 3rkv_A 127 -----------HPAAASVVAREMKIVTERRAEKK 149 (162)
T ss_dssp -----------CGGGHHHHHHHHHHHHHHHHHHT
T ss_pred -----------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 67766 77888888887776543
No 141
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.59 E-value=6.8e-07 Score=73.53 Aligned_cols=95 Identities=14% Similarity=0.125 Sum_probs=61.0
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 041183 616 EHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYAS 693 (760)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 693 (760)
..+..++..+...|++++|...+++.. .+.+...+..+...+...|++++|...++++++..|+++..+..++.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 344555555566666666666665551 233555666666666667777777777777777777667777777777777
Q ss_pred cCChhHHHHHHHHHHhC
Q 041183 694 AGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 694 ~g~~~~A~~~~~~~~~~ 710 (760)
.|++++|...+++..+.
T Consensus 85 ~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHc
Confidence 77777777777766544
No 142
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.56 E-value=4.3e-07 Score=73.90 Aligned_cols=99 Identities=11% Similarity=0.026 Sum_probs=85.2
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--CchhHHHHHH
Q 041183 614 QLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPD--NESTYVLLSN 689 (760)
Q Consensus 614 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 689 (760)
+...+..++..+...|++++|...++++. .+.+...|..+...+...|++++|+..++++++..|+ +..++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 45667777888888888888888888762 3456778888999999999999999999999999999 9999999999
Q ss_pred HHHhc-CChhHHHHHHHHHHhCCC
Q 041183 690 LYASA-GMWNDVGKLRKEMKEKFL 712 (760)
Q Consensus 690 ~~~~~-g~~~~A~~~~~~~~~~~~ 712 (760)
++... |++++|.+.+++..+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999999887654
No 143
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.56 E-value=4.9e-07 Score=77.87 Aligned_cols=105 Identities=7% Similarity=-0.112 Sum_probs=88.8
Q ss_pred CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHH
Q 041183 575 VKPD-EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQ 651 (760)
Q Consensus 575 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~ 651 (760)
+.|+ ...+..+...+.+.|++++|...|+.+.+ -.+.+...|..+..+|...|++++|+..|+++- .+.++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 4564 35677777889999999999999999988 234467889999999999999999999999882 445678899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 041183 652 SLLSACTIYGNIDLGLLAGSKLLELQPDNE 681 (760)
Q Consensus 652 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 681 (760)
.+..++...|++++|+..|++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999543
No 144
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.55 E-value=2.4e-07 Score=76.73 Aligned_cols=94 Identities=13% Similarity=0.010 Sum_probs=83.2
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhc
Q 041183 617 HYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASA 694 (760)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 694 (760)
.+..++..+.+.|++++|+..++++- .+.+...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45567778888999999999988872 4557888999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhC
Q 041183 695 GMWNDVGKLRKEMKEK 710 (760)
Q Consensus 695 g~~~~A~~~~~~~~~~ 710 (760)
|++++|+..+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998764
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.55 E-value=1.5e-07 Score=81.30 Aligned_cols=117 Identities=8% Similarity=-0.054 Sum_probs=91.0
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--
Q 041183 566 LFNKMSKFGVKPD-EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP-- 642 (760)
Q Consensus 566 ~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 642 (760)
.|+++.. +.|+ ...+..+...+...|++++|...|+.+.. ..+.+...|..+..+|...|++++|++.|+++-
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3444444 4553 35566677788888999999998888877 234467778888888889999999998888872
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHH
Q 041183 643 IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVL 686 (760)
Q Consensus 643 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 686 (760)
.+.++..|..+..++...|++++|+..+++++++.|+++.....
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 34567888899999999999999999999999999987766443
No 146
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=1.2e-06 Score=75.56 Aligned_cols=96 Identities=14% Similarity=0.018 Sum_probs=61.8
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHH
Q 041183 615 LEHYACIVDLLGRVGLLEGAKMTIDQM-PIPPD----AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSN 689 (760)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 689 (760)
...+..++..+...|++++|.+.+++. ...|+ ...|..+...+...|++++|+..++++++..|+++.++..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 445555555666666666666666555 23444 4556666666666777777777777777777766677777777
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 041183 690 LYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 690 ~~~~~g~~~~A~~~~~~~~~~ 710 (760)
+|...|++++|...+++..+.
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHc
Confidence 777777777777777766554
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.54 E-value=3.9e-07 Score=91.20 Aligned_cols=86 Identities=10% Similarity=0.002 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCE
Q 041183 647 AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGY 726 (760)
Q Consensus 647 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (760)
..+|..+..++.+.|++++|+..++++++++|+++.++..++.+|...|++++|+..|++..+.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---------------- 259 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---------------- 259 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------
Confidence 5788999999999999999999999999999999999999999999999999999999999876
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHHHHhhh
Q 041183 727 THHFYAGDSSHSQSKEIYKELIKLYEHMVATA 758 (760)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (760)
+|+..+.+..++.+|.++++.+
T Consensus 260 ----------~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 260 ----------YPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp ----------CSSCHHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCCHHHHHHHHHHHHHHHHHH
Confidence 6777888999999998888765
No 148
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.54 E-value=4.2e-07 Score=76.06 Aligned_cols=95 Identities=7% Similarity=-0.033 Sum_probs=80.2
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc-------hhHHH
Q 041183 616 EHYACIVDLLGRVGLLEGAKMTIDQM-P-IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNE-------STYVL 686 (760)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~ 686 (760)
..+..++..+.+.|++++|++.|+++ . .+.+..+|..+..++...|++++|++.+++++++.|++. .+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667888888888888888888877 2 345678899999999999999999999999999888654 47888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 041183 687 LSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 687 l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
++.++...|++++|++.|++..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999987754
No 149
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.52 E-value=6.7e-07 Score=75.24 Aligned_cols=117 Identities=11% Similarity=0.083 Sum_probs=95.1
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-------chhHHH
Q 041183 616 EHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDN-------ESTYVL 686 (760)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~ 686 (760)
..+..++..+...|++++|...+++.- .+.+...+..+...+...|++++|...++++++..|++ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 456667777778888888888887762 34567788888999999999999999999999988766 889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHhhhc
Q 041183 687 LSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYKELIKLYEHMVATAK 759 (760)
Q Consensus 687 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (760)
++.++...|++++|...+++..+. .| ..+....+.+++..++..+|
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--------------------------~~-~~~~~~~l~~~~~~~~~~~~ 130 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--------------------------HR-TPDVLKKCQQAEKILKEQER 130 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--------------------------CC-CHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--------------------------CC-CHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999998865 44 36777888888888877665
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.52 E-value=1.6e-06 Score=81.98 Aligned_cols=193 Identities=8% Similarity=-0.093 Sum_probs=130.7
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCchHHHHH-------HHHHHhcCCHHHHHHHHHhcCC--C-------C----------
Q 041183 490 AMTDLEQGKAIHCLALKARYDQDIFVESAV-------IDMYCKCGTIEDAKRAFRKICR--D-------S---------- 543 (760)
Q Consensus 490 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~--~-------~---------- 543 (760)
..++...|.+.|.++.+.. +-....|..+ ...+.+.++..++...+..-.. | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 3566677777777776654 2334555544 3444444444444444433321 1 1
Q ss_pred -----hHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCC--hh
Q 041183 544 -----LAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQ--LE 616 (760)
Q Consensus 544 -----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ 616 (760)
...+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+.... .. .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHH
Confidence 012344667788889999999999888763 46554555555678899999999999986654 11 121 34
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHH
Q 041183 617 HYACIVDLLGRVGLLEGAKMTIDQMP---IPP--DAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLS 688 (760)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 688 (760)
.+..+..++.+.|++++|+..|++.. ..| ....+..+..++.+.|+.++|...|+++...+|+ +.+...|.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 67788899999999999999999872 214 3447778888899999999999999999999996 66555553
No 151
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.51 E-value=1.4e-06 Score=76.88 Aligned_cols=96 Identities=13% Similarity=-0.003 Sum_probs=87.5
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 041183 615 LEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYA 692 (760)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 692 (760)
...+..++..+...|++++|...+++.. .+.+..++..+...+...|++++|+..++++++..|+++.++..++.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3457778889999999999999999872 45578899999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 041183 693 SAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 693 ~~g~~~~A~~~~~~~~~~ 710 (760)
..|++++|...+++..+.
T Consensus 93 ~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh
Confidence 999999999999998876
No 152
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.49 E-value=1e-05 Score=79.19 Aligned_cols=158 Identities=8% Similarity=-0.116 Sum_probs=120.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---ChH------hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 041183 519 VIDMYCKCGTIEDAKRAFRKICRD---SLA------GWNAMMMGYAQHGCYHEVSNLFNKMSKFGVK-PD----EITYLA 584 (760)
Q Consensus 519 l~~~~~~~~~~~~A~~~~~~~~~~---~~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~ 584 (760)
.+..+...|++++|...+++.... +.. .+..+...+...+++++|+..|+++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 366788899999999999876421 111 2334666777788999999999999884322 22 236888
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhhc----CCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhCC-------CCCC-HHHHH
Q 041183 585 VLTSCCHAGLVREARTYLSCMSDLH----GLIPQ-LEHYACIVDLLGRVGLLEGAKMTIDQMP-------IPPD-AHIWQ 651 (760)
Q Consensus 585 l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~ 651 (760)
+...|...|+++.|...++.+.+.. +..+. ..++..++.+|.+.|++++|.+++++.- ..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8899999999999999999988411 12222 3578899999999999999999998761 2222 67889
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHhcc
Q 041183 652 SLLSACTIYGN-IDLGLLAGSKLLEL 676 (760)
Q Consensus 652 ~l~~~~~~~~~-~~~A~~~~~~~~~~ 676 (760)
.+..++...|+ +++|++.+++++.+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999995 69999999999874
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.47 E-value=1e-06 Score=80.71 Aligned_cols=149 Identities=12% Similarity=-0.054 Sum_probs=97.7
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-H----------------HHH
Q 041183 523 YCKCGTIEDAKRAFRKICR---DSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPD-E----------------ITY 582 (760)
Q Consensus 523 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~----------------~~~ 582 (760)
....|+++++.+.++.-.. .....+..+...+...|++++|+..|++..+. .|+ . ..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHHHHHHHHHH
Confidence 3445566666665543321 13346777888888999999999999998883 342 2 567
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc
Q 041183 583 LAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIY 660 (760)
Q Consensus 583 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~ 660 (760)
..+..++...|++++|+..++.+.+ -.+.+...+..++.+|...|++++|.+.|++.. .+.+..++..+...+...
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 7777888899999999999999887 234467788889999999999999999998872 344566777777777766
Q ss_pred CChhHHH-HHHHHHhc
Q 041183 661 GNIDLGL-LAGSKLLE 675 (760)
Q Consensus 661 ~~~~~A~-~~~~~~~~ 675 (760)
++.+++. ..+..++.
T Consensus 170 ~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 170 KEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHC-----------
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6666555 44444443
No 154
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.47 E-value=1.6e-07 Score=79.82 Aligned_cols=64 Identities=17% Similarity=0.070 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcc-------CCCCchhH----HHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 647 AHIWQSLLSACTIYGNIDLGLLAGSKLLEL-------QPDNESTY----VLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 647 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
...|..+..++.+.|++++|+..+++++++ +|++..+| +..+.++...|++++|+..|++..+-
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 348888889999999999999999999999 99999999 99999999999999999999998763
No 155
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.46 E-value=1.4e-06 Score=73.11 Aligned_cols=92 Identities=11% Similarity=0.006 Sum_probs=65.7
Q ss_pred HHHHHHhhhcCChHHHHHHHHhCC-CCC-CH---HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---chhHHHHHHH
Q 041183 619 ACIVDLLGRVGLLEGAKMTIDQMP-IPP-DA---HIWQSLLSACTIYGNIDLGLLAGSKLLELQPDN---ESTYVLLSNL 690 (760)
Q Consensus 619 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~ 690 (760)
..++..+...|++++|.+.|+++. ..| +. ..+..+..++...|++++|+..++++++..|++ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 344555666677777776666651 122 22 466677777788888888888888888888877 6678888888
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 041183 691 YASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 691 ~~~~g~~~~A~~~~~~~~~~ 710 (760)
+...|++++|...++++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888887765
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.46 E-value=4.2e-07 Score=77.97 Aligned_cols=114 Identities=11% Similarity=-0.035 Sum_probs=87.1
Q ss_pred CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHH
Q 041183 575 VKPD-EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQ 651 (760)
Q Consensus 575 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~ 651 (760)
..|+ ...+..+...+.+.|++++|...|+.+.. ..+.+...|..+..+|.+.|++++|+..|+++- .+.++..+.
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 90 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPF 90 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence 3453 34455566677888888888888888876 233456777888888888888888888888772 345677888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 041183 652 SLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNL 690 (760)
Q Consensus 652 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 690 (760)
.+..++...|++++|+..+++++++.|+++........+
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 899999999999999999999999999887766554433
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.45 E-value=2.4e-06 Score=70.16 Aligned_cols=110 Identities=11% Similarity=-0.074 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 041183 580 ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSAC 657 (760)
Q Consensus 580 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 657 (760)
..+..+...+...|++++|...++.+.. ..+.+...+..++.++...|++++|...+++.- .+.+...+..+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4455566666777777777777777766 123356667777777777778888777777662 344677888889999
Q ss_pred HhcCChhHHHHHHHHHhccCCCCchhHHHHHHHH
Q 041183 658 TIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLY 691 (760)
Q Consensus 658 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 691 (760)
...|++++|...++++++..|+++..+..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999888888877664
No 158
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.45 E-value=1.9e-05 Score=83.05 Aligned_cols=357 Identities=9% Similarity=-0.043 Sum_probs=200.6
Q ss_pred CC-ChHHHHHHHhcCCCCCeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcC-CHHHHHHHHH
Q 041183 324 CG-QVNDARSIFDYLIFKDSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSK-SLKQAMQVHS 401 (760)
Q Consensus 324 ~g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~ 401 (760)
.| +++.|..+|+.+ +..+-. |+++.+..+|+..... .|+...|...+....+.+ ..+....+|+
T Consensus 7 ~~~~i~~aR~vyer~-----------l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 7 MGVELSSPSAIMEHA-----------RRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -----CCHHHHHHHH-----------HHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred cCcchHHHHHHHHHH-----------HHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 45 366666666554 222222 8999999999999874 578888877777666555 3456677888
Q ss_pred HHHHh-CC-CCChhHHHHHHHHHH----hcCChHHHHHHHhhcCCCCcccHHHHHHHHHh---cC--------------C
Q 041183 402 HIIKS-GF-LLDDSMISCLITTYG----KCNALNESKRVLSEIDKKNAVHINALASVLVY---AS--------------C 458 (760)
Q Consensus 402 ~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~---~~--------------~ 458 (760)
..+.. |. ..+...|...+..+. ..++.+.+.++|++...-....+..+-..|.. .. .
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~ 152 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPI 152 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHH
Confidence 77764 53 336677777776654 24678889999988865222222333222221 11 1
Q ss_pred hhHHHHHHHHHHhCCCCCChhHHHHHHHHHhcc--C--C---HHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHH
Q 041183 459 HAEALELYRTIWGSCREVNGSTFSIVLKACAAM--T--D---LEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIED 531 (760)
Q Consensus 459 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--~--~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 531 (760)
+..|..+++++...-...+...|...+.--... + + .+.+..+|++++... +.++..|...+..+.+.|+.+.
T Consensus 153 y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ 231 (493)
T 2uy1_A 153 FQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEK 231 (493)
T ss_dssp HHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 222333344333210011223444433332221 1 1 345667777777754 4557777777777788888888
Q ss_pred HHHHHHhcCC-C-ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCC---------CCCC---HHHHHHHHHHHhccCcHHH
Q 041183 532 AKRAFRKICR-D-SLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFG---------VKPD---EITYLAVLTSCCHAGLVRE 597 (760)
Q Consensus 532 A~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---------~~p~---~~~~~~l~~~~~~~g~~~~ 597 (760)
|..++++... | +...|. .|....+.++. ++.+.+.- ..+. ...|...+....+.+..+.
T Consensus 232 ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~ 304 (493)
T 2uy1_A 232 AKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLEL 304 (493)
T ss_dssp HHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHH
Confidence 8888876532 2 222222 12221111111 22222210 0111 1334445555556677888
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHhhhcC-ChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 041183 598 ARTYLSCMSDLHGLIPQLEHYACIVDLLGRVG-LLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLL 674 (760)
Q Consensus 598 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 674 (760)
|..+|+.+ ... ..+...|...+..-...+ +.+.|..+|+..- .+.++..|...+.-....|+.+.|..+++++
T Consensus 305 AR~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~- 380 (493)
T 2uy1_A 305 FRKLFIEL-GNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL- 380 (493)
T ss_dssp HHHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS-
T ss_pred HHHHHHHh-hCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-
Confidence 88888888 411 123444443333223333 6888888888761 2233556666777777788888888888887
Q ss_pred ccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 675 ELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 675 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
+.....+...+..-...|+.+.+..+++++.+
T Consensus 381 ---~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 381 ---EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp ---CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33556677777666777888888888877664
No 159
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.41 E-value=3.9e-06 Score=77.00 Aligned_cols=93 Identities=11% Similarity=0.068 Sum_probs=52.7
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC-----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC--CC----c
Q 041183 617 HYACIVDLLGRVGLLEGAKMTIDQMP-----IPPD----AHIWQSLLSACTIYGNIDLGLLAGSKLLELQP--DN----E 681 (760)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p--~~----~ 681 (760)
.+..+...+...|++++|.+.+++.. ...+ ...+..+...+...|++++|...+++++++.+ ++ .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 34444444455555555544444331 1111 23455666666777777777777777765421 11 2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 682 STYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 682 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
.++..++.++...|++++|...+++..+
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2356777777777887777777776554
No 160
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.40 E-value=5.9e-06 Score=81.01 Aligned_cols=162 Identities=7% Similarity=-0.113 Sum_probs=119.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC---CCCh------HhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 041183 515 VESAVIDMYCKCGTIEDAKRAFRKIC---RDSL------AGWNAMMMGYAQHGCYHEVSNLFNKMSKFGV---KPD--EI 580 (760)
Q Consensus 515 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~ 580 (760)
.+...+..+...|++++|.+.+.+.. +... ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 44456677888899999988887542 1111 1244466667788899999999999876321 122 34
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCC-----hhHHHHHHHHhhhcCChHHHHHHHHhCC-------CCC-CH
Q 041183 581 TYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQ-----LEHYACIVDLLGRVGLLEGAKMTIDQMP-------IPP-DA 647 (760)
Q Consensus 581 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p-~~ 647 (760)
+++.+...|...|++++|...++++.+.....|+ ..++..++.+|.+.|++++|..++++.- ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888999999999999999998731111222 2588899999999999999999998761 111 26
Q ss_pred HHHHHHHHHHHhcCChhHH-HHHHHHHhcc
Q 041183 648 HIWQSLLSACTIYGNIDLG-LLAGSKLLEL 676 (760)
Q Consensus 648 ~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~ 676 (760)
.+|..+...+...|++++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788999999999999999 8889988864
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.40 E-value=2e-06 Score=71.79 Aligned_cols=111 Identities=8% Similarity=-0.121 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 041183 580 ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSAC 657 (760)
Q Consensus 580 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 657 (760)
..+..+...+.+.|++++|...|+...+ -.+.+...|..++.++.+.|++++|+..+++.- .+.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3455555666777777777777777766 123346677777777777777777777777662 345577888888999
Q ss_pred HhcCChhHHHHHHHHHhccC------CCCchhHHHHHHHHH
Q 041183 658 TIYGNIDLGLLAGSKLLELQ------PDNESTYVLLSNLYA 692 (760)
Q Consensus 658 ~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 692 (760)
...|++++|+..++++++++ |+++.+...+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99999999999999999998 877777777766554
No 162
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.39 E-value=1.4e-06 Score=77.96 Aligned_cols=127 Identities=10% Similarity=0.011 Sum_probs=97.8
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHH-hhhcCCh-
Q 041183 555 AQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDL-LGRVGLL- 631 (760)
Q Consensus 555 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 631 (760)
...|++++|...+++..+. .| +...+..+...+...|++++|...|+.+.+. .+.+...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 3467788888888887773 45 5577778888888999999999999988872 23356777788888 7788888
Q ss_pred -HHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHH
Q 041183 632 -EGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYV 685 (760)
Q Consensus 632 -~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 685 (760)
++|...++++- .+.+...+..+...+...|++++|...+++++++.|+++....
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 99999988872 3456788889999999999999999999999999998765443
No 163
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.39 E-value=3.5e-07 Score=75.33 Aligned_cols=83 Identities=13% Similarity=0.089 Sum_probs=53.4
Q ss_pred cCChHHHHHHHHhC-CC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHH
Q 041183 628 VGLLEGAKMTIDQM-PI----PPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGK 702 (760)
Q Consensus 628 ~g~~~~A~~~~~~~-~~----~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 702 (760)
.|++++|+..|++. .. +.+..+|..+...+...|++++|+..+++++++.|+++.++..++.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 35555555555554 22 22344566667777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhC
Q 041183 703 LRKEMKEK 710 (760)
Q Consensus 703 ~~~~~~~~ 710 (760)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77776654
No 164
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.37 E-value=5.6e-05 Score=73.99 Aligned_cols=211 Identities=10% Similarity=0.030 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcC-CHHHHHHHHHhcC---CCChHhHHHHHHHHHHc-C-CHHHHHHHHH
Q 041183 495 EQGKAIHCLALKARYDQDIFVESAVIDMYCKCG-TIEDAKRAFRKIC---RDSLAGWNAMMMGYAQH-G-CYHEVSNLFN 568 (760)
Q Consensus 495 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~ 568 (760)
++|.++++.++..+ +-+..+|+.-...+...| .+++++.+++.+. ..+..+|+.-...+.+. + ++++++++++
T Consensus 71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 34444555554443 123344444444444444 3555555555543 23334455544444444 4 5566666666
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHhccCcHH--------HHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCC-------hH
Q 041183 569 KMSKFGVKP-DEITYLAVLTSCCHAGLVR--------EARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGL-------LE 632 (760)
Q Consensus 569 ~m~~~g~~p-~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~ 632 (760)
++.+ ..| |...++.-...+.+.|.++ ++++.++.+.+ ..+-|...|+....++.+.++ ++
T Consensus 150 k~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 150 GSLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHH--hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccccchHHHH
Confidence 6655 334 3344433333333333333 66666666665 233355556666666655554 46
Q ss_pred HHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCh--------------------hHHHHHHHHHhccC------CCCchhH
Q 041183 633 GAKMTIDQM--PIPPDAHIWQSLLSACTIYGNI--------------------DLGLLAGSKLLELQ------PDNESTY 684 (760)
Q Consensus 633 ~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~--------------------~~A~~~~~~~~~~~------p~~~~~~ 684 (760)
+++++++++ ..+-|...|+-+-..+.+.|+. ....+....+.... +.++.++
T Consensus 226 eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 226 DELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 666666655 1445666676666666555543 22222222222222 4578888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 685 VLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 685 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
..|+.+|...|+.++|.++++.+.++
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999998643
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=4.7e-06 Score=71.76 Aligned_cols=112 Identities=13% Similarity=-0.024 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHH
Q 041183 579 EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQ----LEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQS 652 (760)
Q Consensus 579 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ 652 (760)
...+..+...+...|++++|...|+.+.+ ..|+ ...+..+..+|...|++++|...+++.. .+.+...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 44555556666666677777776666665 3344 4566667777777777777777776652 3446778888
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 041183 653 LLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYAS 693 (760)
Q Consensus 653 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 693 (760)
+...+...|++++|...+++++++.|++..++..+..+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 88899999999999999999999999888888777766543
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.37 E-value=2.7e-06 Score=75.02 Aligned_cols=95 Identities=8% Similarity=-0.041 Sum_probs=60.9
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 041183 615 LEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYA 692 (760)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 692 (760)
...+..+...+.+.|++++|++.|++.- .+.+...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4455566666666666666666666652 23355566666666666666666666666666666666666666666666
Q ss_pred hcCChhHHHHHHHHHHh
Q 041183 693 SAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 693 ~~g~~~~A~~~~~~~~~ 709 (760)
..|++++|+..|++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 66666666666666554
No 167
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.33 E-value=2.6e-06 Score=82.73 Aligned_cols=177 Identities=8% Similarity=-0.070 Sum_probs=124.0
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHH
Q 041183 543 SLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACI 621 (760)
Q Consensus 543 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 621 (760)
+...+..+...+.+.|++++|+..|++..+ ..| +...+..+..++.+.|++++|...++.+.+ ..+.+...+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 445677888899999999999999999988 466 567788888899999999999999999987 233457888999
Q ss_pred HHHhhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhH
Q 041183 622 VDLLGRVGLLEGAKMTIDQMP-IPPDA-HIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWND 699 (760)
Q Consensus 622 ~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 699 (760)
+.+|...|++++|...|+++- ..|+. ..+...+..... ...+...........|+++.+...++..+ .|++++
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHH
Confidence 999999999999999998762 11211 011111111111 11222223333346677888888887654 689999
Q ss_pred HHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHHHHHHHHHHH
Q 041183 700 VGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYKELIKLYEHM 754 (760)
Q Consensus 700 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (760)
|++.+++..+. +|+...+...+.+++.+.
T Consensus 154 A~~~~~~al~~--------------------------~p~~~~~~~~l~~~~~~~ 182 (281)
T 2c2l_A 154 ELEECQRNHEG--------------------------HEDDGHIRAQQACIEAKH 182 (281)
T ss_dssp HHTTTSGGGTT--------------------------TSCHHHHTHHHHHHHHHH
T ss_pred HHHHHHhhhcc--------------------------ccchhhhhhHHHHHHHHH
Confidence 99888876643 566666666666665554
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.32 E-value=4.4e-06 Score=87.44 Aligned_cols=146 Identities=12% Similarity=0.045 Sum_probs=110.3
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCC----------------hhHHHHH
Q 041183 559 CYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQ----------------LEHYACI 621 (760)
Q Consensus 559 ~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~~l 621 (760)
++++|...|+...+ ..| ....+..+...+.+.|++++|...|+++.+ +.|+ ...|..+
T Consensus 249 ~~~~A~~~~~~~~~--~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~~~~~~~~~~~~~~~~~~nl 323 (457)
T 1kt0_A 249 SFEKAKESWEMDTK--EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS---WLEMEYGLSEKESKASESFLLAAFLNL 323 (457)
T ss_dssp EEECCCCGGGSCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHTTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---HhcccccCChHHHHHHHHHHHHHHHHH
Confidence 33444444433333 234 346777788899999999999999999987 2333 4788889
Q ss_pred HHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhH
Q 041183 622 VDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWND 699 (760)
Q Consensus 622 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 699 (760)
..+|.+.|++++|+..++++- .+.+...|..+..++...|++++|+..|+++++++|++..++..++.++.+.|++++
T Consensus 324 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 324 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998872 455688889999999999999999999999999999999999999999999999988
Q ss_pred HHH-HHHHHHh
Q 041183 700 VGK-LRKEMKE 709 (760)
Q Consensus 700 A~~-~~~~~~~ 709 (760)
|.+ .+++|..
T Consensus 404 a~~~~~~~~f~ 414 (457)
T 1kt0_A 404 RDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHh
Confidence 764 4555543
No 169
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.30 E-value=1e-06 Score=73.70 Aligned_cols=93 Identities=12% Similarity=0.041 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCE
Q 041183 647 AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGY 726 (760)
Q Consensus 647 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (760)
..++..++..+.+.|++++|+..|+++++++|+++.+|..++.+|...|++++|+..+++..+.......
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~---------- 77 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA---------- 77 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch----------
Confidence 3467889999999999999999999999999999999999999999999999999999998764321111
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHHHHhhh
Q 041183 727 THHFYAGDSSHSQSKEIYKELIKLYEHMVATA 758 (760)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (760)
.++....++..++..|..+++.+
T Consensus 78 ---------~~~~~a~~~~~lg~~~~~~~~~~ 100 (127)
T 4gcn_A 78 ---------DYKLIAKAMSRAGNAFQKQNDLS 100 (127)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ---------hhHHHHHHHHHHHHHHHHcCCHH
Confidence 13445667777777777776654
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.30 E-value=1.6e-06 Score=91.16 Aligned_cols=118 Identities=8% Similarity=-0.061 Sum_probs=92.2
Q ss_pred HHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChh
Q 041183 587 TSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM-P-IPPDAHIWQSLLSACTIYGNID 664 (760)
Q Consensus 587 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~ 664 (760)
..+.+.|++++|.+.++++.+ -.+.+...|..+..+|.+.|++++|++.++++ . .+.+..+|..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 345677888888888888877 12334677788888888888888888888776 2 3456778899999999999999
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHH--HHhcCChhHHHHHHHH
Q 041183 665 LGLLAGSKLLELQPDNESTYVLLSNL--YASAGMWNDVGKLRKE 706 (760)
Q Consensus 665 ~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 706 (760)
+|++.+++++++.|++..++..++.+ +.+.|++++|++.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999988 8899999999999884
No 171
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.29 E-value=3e-06 Score=88.77 Aligned_cols=128 Identities=9% Similarity=-0.073 Sum_probs=103.7
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 041183 544 LAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPD----------------EITYLAVLTSCCHAGLVREARTYLSCMSD 607 (760)
Q Consensus 544 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (760)
...|..+...+.+.|++++|+..|++..+ +.|+ ...|..+..++.+.|++++|+..++.+.+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 44788899999999999999999999998 4554 47788888999999999999999999998
Q ss_pred hcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHH-HHHHHHhc
Q 041183 608 LHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM-PIPP-DAHIWQSLLSACTIYGNIDLGL-LAGSKLLE 675 (760)
Q Consensus 608 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~ 675 (760)
-.+.+...|..+..+|...|++++|...|+++ ...| +..++..+...+...++.++|. ..+.+++.
T Consensus 346 --~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 346 --LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp --HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred --cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23446788999999999999999999999988 3444 4567888888888888888776 44555544
No 172
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.28 E-value=3.8e-06 Score=84.95 Aligned_cols=135 Identities=10% Similarity=0.016 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041183 579 EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQSLLSACT 658 (760)
Q Consensus 579 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 658 (760)
...+..+...+.+.|++++|+..|+++.+. .+.. ......+++.+ . .+.+..+|..+..++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~----------~~~~~~~~~~~----~-~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGS----------RAAAEDADGAK----L-QPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHH----------HHHSCHHHHGG----G-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcC----------ccccChHHHHH----H-HHHHHHHHHHHHHHHH
Confidence 345667777888888899988888888761 0000 00000000000 0 1123455666666777
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCC
Q 041183 659 IYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHS 738 (760)
Q Consensus 659 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (760)
+.|++++|+..++++++++|+++.++..++.+|...|++++|+..+++..+. .|
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------------------------~P 338 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------------------------AP 338 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CT
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------------------CC
Confidence 7777777777777777777777777777777777777777777777776654 45
Q ss_pred ChHHHHHHHHHHHHHHHhh
Q 041183 739 QSKEIYKELIKLYEHMVAT 757 (760)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~ 757 (760)
+..++...+++++.++++.
T Consensus 339 ~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 339 EDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 5566666666666666554
No 173
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.28 E-value=0.00029 Score=68.64 Aligned_cols=177 Identities=11% Similarity=0.052 Sum_probs=94.4
Q ss_pred HHHHHHHHhcC---CCChHhHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCc-HHHHHHHH
Q 041183 530 EDAKRAFRKIC---RDSLAGWNAMMMGYAQHG--CYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGL-VREARTYL 602 (760)
Q Consensus 530 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~-~~~A~~~~ 602 (760)
++++.+++.+. +.+..+|+.-...+.+.+ .+++++.+++++.+ ..| |...|+.-...+...|. ++++++.+
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~--~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 44444444432 334445555444444444 25566666666655 334 33444444444444454 35566666
Q ss_pred HHhhhhcCCCCChhHHHHHHHHhhhc--------------CChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc------
Q 041183 603 SCMSDLHGLIPQLEHYACIVDLLGRV--------------GLLEGAKMTIDQM--PIPPDAHIWQSLLSACTIY------ 660 (760)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~------ 660 (760)
+.+.+ ..+-|...|+....++.+. +.++++++.+... ..+-|...|+-+-..+...
T Consensus 169 ~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHH--HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHH--HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 65555 1233444444444444333 3355666666655 1445566666554444443
Q ss_pred -----CChhHHHHHHHHHhccCCCCchhHHHHHHHHH---hcCChhHHHHHHHHHHhC
Q 041183 661 -----GNIDLGLLAGSKLLELQPDNESTYVLLSNLYA---SAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 661 -----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~ 710 (760)
+.++++++.+++++++.|++.-++..++.... ..|..++....+.++.+-
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 34677888888888888877555444443222 356677777777777755
No 174
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.27 E-value=3.9e-06 Score=71.26 Aligned_cols=113 Identities=8% Similarity=-0.161 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHH
Q 041183 578 DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLS 655 (760)
Q Consensus 578 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~ 655 (760)
+...+..+...+...|++++|...|+.+.+ ..+.+...+..++.++...|++++|...+++.. .+.+...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 456666677777777777777777777766 123346677777777777888888877777662 3456778888888
Q ss_pred HHHhcCChhHHHHHHHHHhccCCC-----CchhHHHHHHHHH
Q 041183 656 ACTIYGNIDLGLLAGSKLLELQPD-----NESTYVLLSNLYA 692 (760)
Q Consensus 656 ~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~ 692 (760)
.+...|++++|+..+++++++.|+ +..+...+..+..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998886 5555555554433
No 175
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.21 E-value=9.7e-06 Score=65.64 Aligned_cols=61 Identities=11% Similarity=0.031 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041183 648 HIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMK 708 (760)
Q Consensus 648 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (760)
..|..+...+...|++++|+..+++++++.|+++.++..++.+|...|++++|+..+++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3444444444555555555555555555555555555555555555555555555555444
No 176
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.20 E-value=2.8e-06 Score=84.99 Aligned_cols=148 Identities=10% Similarity=-0.026 Sum_probs=84.9
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 041183 544 LAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVD 623 (760)
Q Consensus 544 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 623 (760)
...+..+...+.+.|++++|+..|++... ..|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 34567777788888889999998888877 4565442 233444444433221 136788899
Q ss_pred HhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHH-HHhcCChhHH
Q 041183 624 LLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNL-YASAGMWNDV 700 (760)
Q Consensus 624 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A 700 (760)
+|.+.|++++|+..+++.- .+.+...|..+..++...|++++|+..|+++++++|+++.++..+..+ ....+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998872 345788899999999999999999999999999999999999999888 4456777888
Q ss_pred HHHHHHHHhCC
Q 041183 701 GKLRKEMKEKF 711 (760)
Q Consensus 701 ~~~~~~~~~~~ 711 (760)
...+++|.+..
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88888876543
No 177
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.20 E-value=0.00068 Score=66.36 Aligned_cols=230 Identities=10% Similarity=0.003 Sum_probs=157.9
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhc-C-CHH
Q 041183 454 VYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMT-DLEQGKAIHCLALKARYDQDIFVESAVIDMYCKC-G-TIE 530 (760)
Q Consensus 454 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 530 (760)
...+..++|+++++++...+.. +..+|+.--..+...| +++.+..+++.+.... +-+..+|+.-...+.+. + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 3444556788888888775422 3334565555555666 5888888888888766 35667777766666666 6 788
Q ss_pred HHHHHHHhcCCC---ChHhHHHHHHHHHHcCCHH--------HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCc----
Q 041183 531 DAKRAFRKICRD---SLAGWNAMMMGYAQHGCYH--------EVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGL---- 594 (760)
Q Consensus 531 ~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~---- 594 (760)
+++++++.+... |...|+--...+.+.|.++ ++++.++++.+. .| |...++.....+.+.+.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccc
Confidence 999999888644 4456666555555555555 899999999884 55 55677777667777665
Q ss_pred ---HHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCCh--------------------HHHHHHHHhCC-C-------
Q 041183 595 ---VREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLL--------------------EGAKMTIDQMP-I------- 643 (760)
Q Consensus 595 ---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~-~------- 643 (760)
++++++.++.+.. -.+-|...|+.+-..+.+.|+. .+..+...++. .
T Consensus 221 ~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 221 SRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp HHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred hHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 6888888888887 2444667777777777766654 33444444442 1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHh-ccCCCCchhHHHHHH
Q 041183 644 PPDAHIWQSLLSACTIYGNIDLGLLAGSKLL-ELQPDNESTYVLLSN 689 (760)
Q Consensus 644 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~l~~ 689 (760)
.+++..+..|+..|...|+.++|.++++.+. +.+|-....|...+.
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 4678889999999999999999999999987 678866666655543
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.16 E-value=1.2e-05 Score=66.37 Aligned_cols=85 Identities=9% Similarity=-0.100 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEE
Q 041183 649 IWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTH 728 (760)
Q Consensus 649 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (760)
.+..+...+...|++++|+..++++++.+|+++.++..++.++...|++++|+..+++..+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------------------ 80 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML------------------ 80 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------
Confidence 45667788899999999999999999999999999999999999999999999999999876
Q ss_pred EEEcCCCCCCChHHHHHHHHHHHHHHHhhhc
Q 041183 729 HFYAGDSSHSQSKEIYKELIKLYEHMVATAK 759 (760)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (760)
.|+..+.+..++.+|.+.|+.++
T Consensus 81 --------~P~~~~~~~~la~~~~~~g~~~~ 103 (121)
T 1hxi_A 81 --------DPKDIAVHAALAVSHTNEHNANA 103 (121)
T ss_dssp --------CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred --------CCCCHHHHHHHHHHHHHcCCHHH
Confidence 68888899999999999988753
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.16 E-value=2.9e-06 Score=89.16 Aligned_cols=116 Identities=11% Similarity=0.000 Sum_probs=97.8
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcC
Q 041183 618 YACIVDLLGRVGLLEGAKMTIDQM-P-IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAG 695 (760)
Q Consensus 618 ~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 695 (760)
+..++..+.+.|++++|.+.++++ . .+.+..+|..+..++...|++++|+..++++++++|+++.++..++.+|...|
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 344556678899999999999988 2 34568899999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHHHHHHH--HHHHHhhhc
Q 041183 696 MWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYKELIKL--YEHMVATAK 759 (760)
Q Consensus 696 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 759 (760)
++++|+..+++..+. +|+..+.+..++.+ +.+.++.++
T Consensus 89 ~~~eA~~~~~~al~~--------------------------~p~~~~~~~~l~~~~~~~~~g~~~~ 128 (477)
T 1wao_1 89 KFRAALRDYETVVKV--------------------------KPHDKDAKMKYQECNKIVKQKAFER 128 (477)
T ss_dssp CHHHHHHHHHHHHHH--------------------------STTCTTHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998875 45555566666666 666666554
No 180
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.16 E-value=1.2e-05 Score=65.00 Aligned_cols=100 Identities=12% Similarity=-0.004 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCC--CHHHHHHHHH
Q 041183 580 ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM-P-IPP--DAHIWQSLLS 655 (760)
Q Consensus 580 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p--~~~~~~~l~~ 655 (760)
..+..+...+...|++++|...++.+.+ ..+.+...+..++.++...|++++|.+.+++. . .+. +...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQ--LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3444455556666666666666666655 12234555666666666666777776666655 1 223 4677777778
Q ss_pred HHHhc-CChhHHHHHHHHHhccCCCCc
Q 041183 656 ACTIY-GNIDLGLLAGSKLLELQPDNE 681 (760)
Q Consensus 656 ~~~~~-~~~~~A~~~~~~~~~~~p~~~ 681 (760)
.+... |++++|++.+++++...|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888 888888888888888877543
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.15 E-value=8.5e-06 Score=71.36 Aligned_cols=128 Identities=15% Similarity=0.053 Sum_probs=80.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhCC----CCCC----HHH
Q 041183 582 YLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQ----LEHYACIVDLLGRVGLLEGAKMTIDQMP----IPPD----AHI 649 (760)
Q Consensus 582 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~ 649 (760)
+..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+++.. ..++ ..+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444455555555555555554431100011 1345556666666666666666665541 1111 345
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCC------CCchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 650 WQSLLSACTIYGNIDLGLLAGSKLLELQP------DNESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 650 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
+..+...+...|++++|...+++++++.+ ....++..++.++...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 67777788888899999988888887532 1356788899999999999999999988765
No 182
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.15 E-value=2.5e-05 Score=71.50 Aligned_cols=96 Identities=16% Similarity=0.014 Sum_probs=46.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhh---cCCCC--ChhHHHHHHHHhhhcCChHHHHHHHHhCC----CCCC----H
Q 041183 581 TYLAVLTSCCHAGLVREARTYLSCMSDL---HGLIP--QLEHYACIVDLLGRVGLLEGAKMTIDQMP----IPPD----A 647 (760)
Q Consensus 581 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~ 647 (760)
.+..+...+...|++++|...+++..+. .+..| ....+..+...+...|++++|...+++.. ..++ .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444444445555555555554444331 11111 12334445555555555555555554431 1111 1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 041183 648 HIWQSLLSACTIYGNIDLGLLAGSKLLEL 676 (760)
Q Consensus 648 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 676 (760)
.++..+...+...|++++|...+++++++
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 23455566666667777777777666664
No 183
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.14 E-value=8.2e-06 Score=68.33 Aligned_cols=111 Identities=5% Similarity=-0.139 Sum_probs=71.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-----CCCC----HHHHH
Q 041183 581 TYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP-----IPPD----AHIWQ 651 (760)
Q Consensus 581 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~----~~~~~ 651 (760)
.+..+...+...|+++.|...|+.+.+ ..+.+...+..++.++...|++++|...++++. ..++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 344445555556666666666665555 123344555556666666666666666665551 1222 56778
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhc
Q 041183 652 SLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASA 694 (760)
Q Consensus 652 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 694 (760)
.+...+...|++++|...++++++..| ++.....+..+....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 888888899999999999999999888 677777776665443
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.13 E-value=2.9e-05 Score=64.82 Aligned_cols=106 Identities=11% Similarity=-0.003 Sum_probs=70.4
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhhcCCCCCh---hHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-C---HHHHHHHHHH
Q 041183 585 VLTSCCHAGLVREARTYLSCMSDLHGLIPQL---EHYACIVDLLGRVGLLEGAKMTIDQMP-IPP-D---AHIWQSLLSA 656 (760)
Q Consensus 585 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~---~~~~~~l~~~ 656 (760)
+...+...|++++|...|+.+.+. .+.+. ..+..++.++.+.|++++|...++++- ..| + +..+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 344555666667776666666651 11122 355666666777777777777776651 122 2 5667788888
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 041183 657 CTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYA 692 (760)
Q Consensus 657 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 692 (760)
+...|++++|...++++++..|+++........+-.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 889999999999999999999987766655544433
No 185
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.13 E-value=2.6e-06 Score=72.32 Aligned_cols=73 Identities=15% Similarity=0.115 Sum_probs=55.5
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CC-------CCC-HHHH----HHHHHHHHhcCChhHHHHHHHHHhccCCCCchh
Q 041183 617 HYACIVDLLGRVGLLEGAKMTIDQM-PI-------PPD-AHIW----QSLLSACTIYGNIDLGLLAGSKLLELQPDNEST 683 (760)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~p~-~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 683 (760)
.|..+..++.+.|++++|+..+++. .. .|+ ...| .....++...|++++|+..|++++++.|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666666677777777766666654 22 565 5578 899999999999999999999999999988766
Q ss_pred HHHHHH
Q 041183 684 YVLLSN 689 (760)
Q Consensus 684 ~~~l~~ 689 (760)
+..+..
T Consensus 139 ~~~~~~ 144 (159)
T 2hr2_A 139 TPGKER 144 (159)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 655443
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=2.7e-05 Score=81.29 Aligned_cols=163 Identities=6% Similarity=-0.104 Sum_probs=114.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhhhh---cCCCC-ChhH
Q 041183 547 WNAMMMGYAQHGCYHEVSNLFNKMSKFG-VKPDE----ITYLAVLTSCCHAGLVREARTYLSCMSDL---HGLIP-QLEH 617 (760)
Q Consensus 547 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~-~~~~ 617 (760)
+..++..|...|++++|.+.+.++.+.- ..++. ...+.+-..+...|+++.|..+++..... .+..+ ...+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5667778888888888888887765521 11221 12233334455678888888888776541 12222 2467
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccC---CCC----ch
Q 041183 618 YACIVDLLGRVGLLEGAKMTIDQMP-------IPP-DAHIWQSLLSACTIYGNIDLGLLAGSKLLELQ---PDN----ES 682 (760)
Q Consensus 618 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~----~~ 682 (760)
+..++..|...|++++|..++++.. .++ ...++..++..|...|++++|...++++.... |++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 7888999999999999998888661 122 24577888889999999999999999988753 322 34
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 683 TYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 667788888999999999988887654
No 187
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.11 E-value=1.4e-05 Score=61.86 Aligned_cols=64 Identities=27% Similarity=0.350 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 647 AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 647 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
...+..+...+...|++++|+..++++++..|+++.++..++.++...|++++|+..+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455556666666666666666666666666666666666666666666666666666666544
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.11 E-value=6.3e-06 Score=72.42 Aligned_cols=79 Identities=14% Similarity=0.013 Sum_probs=64.4
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc-hhHHHHHHHH
Q 041183 615 LEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNE-STYVLLSNLY 691 (760)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~ 691 (760)
...|..+..+|.+.|++++|+..++++- .+.+...|..+..++...|++++|+..++++++++|+++ .+...+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4677888888889999999998888772 455688999999999999999999999999999999887 5555555444
Q ss_pred Hh
Q 041183 692 AS 693 (760)
Q Consensus 692 ~~ 693 (760)
..
T Consensus 143 ~~ 144 (162)
T 3rkv_A 143 ER 144 (162)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.11 E-value=8.7e-05 Score=79.38 Aligned_cols=167 Identities=9% Similarity=-0.031 Sum_probs=130.6
Q ss_pred HHHHHHHHHhcC---CCChHhHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC-
Q 041183 529 IEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGC----------YHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAG- 593 (760)
Q Consensus 529 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g- 593 (760)
.++|.+.++.+. +.+...|+.--.++...|+ ++++++.++++.+ ..| +...|..-...+.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccc
Confidence 456677776663 3344566666666666666 8899999999988 567 4567777777777888
Q ss_pred -cHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcC-ChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhc---------
Q 041183 594 -LVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVG-LLEGAKMTIDQM-P-IPPDAHIWQSLLSACTIY--------- 660 (760)
Q Consensus 594 -~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~--------- 660 (760)
+++++++.++.+.+ -.+-+...|+.-..++.+.| .++++++.++++ . .+-+..+|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 77999999999988 23446778888888888888 889999999888 2 556788898888877663
Q ss_pred -----CChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhH
Q 041183 661 -----GNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWND 699 (760)
Q Consensus 661 -----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 699 (760)
+.++++++.+++++.++|++..+|..+..++.+.|++++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999999999999999999999999998655
No 190
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.10 E-value=0.00055 Score=66.69 Aligned_cols=193 Identities=9% Similarity=-0.034 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcC--CHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCC-HHHHHHHH
Q 041183 494 LEQGKAIHCLALKARYDQDIFVESAVIDMYCKCG--TIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGC-YHEVSNLF 567 (760)
Q Consensus 494 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~~a~~~~ 567 (760)
++.+..+++.+.... +-+..+|+.-.-.+.+.+ .++++..+++.+. ..|...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 455666666666654 345666665555555666 3677777777664 4455667666666666676 57788888
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHhcc--------------CcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhc----
Q 041183 568 NKMSKFGVKP-DEITYLAVLTSCCHA--------------GLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRV---- 628 (760)
Q Consensus 568 ~~m~~~g~~p-~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 628 (760)
+++.+ ..| |...|+.....+.+. +.++++++.+..... -.+-|...|+.+-..+.+.
T Consensus 169 ~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHH--HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHH--HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCcc
Confidence 88777 345 444444443333322 457778888887776 2333556665555555444
Q ss_pred -------CChHHHHHHHHhC-CCCCCHHHHHHHHHHH-----HhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 041183 629 -------GLLEGAKMTIDQM-PIPPDAHIWQSLLSAC-----TIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYA 692 (760)
Q Consensus 629 -------g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~-----~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 692 (760)
+.++++++.++++ ...|+. .|..+..++ ...|..+++...+.++.+++|....-|..+...+.
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~~ 320 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 320 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 4567888888877 344553 343322222 23577789999999999999988887777765543
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.10 E-value=1.5e-06 Score=70.58 Aligned_cols=94 Identities=16% Similarity=0.037 Sum_probs=79.1
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------chhHH
Q 041183 614 QLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDN------ESTYV 685 (760)
Q Consensus 614 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~ 685 (760)
+...+..++..+.+.|++++|++.+++.- .+.+...|..+..++...|++++|+..+++++++.|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 34567777888888888888888888772 44567889999999999999999999999999999988 88899
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 041183 686 LLSNLYASAGMWNDVGKLRKEM 707 (760)
Q Consensus 686 ~l~~~~~~~g~~~~A~~~~~~~ 707 (760)
.++.++...|++++|+..++++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 9999999999988887766644
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.09 E-value=3.1e-06 Score=69.53 Aligned_cols=95 Identities=16% Similarity=0.120 Sum_probs=68.6
Q ss_pred ccCcHHHHHHHHHHhhhhcC--CCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHH
Q 041183 591 HAGLVREARTYLSCMSDLHG--LIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLG 666 (760)
Q Consensus 591 ~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A 666 (760)
..|++++|+..|+++.+ .+ .+.+...+..++.+|...|++++|+..++++- .+.+..++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 35677777788877776 21 12245667778888888888888888887772 345677888888999999999999
Q ss_pred HHHHHHHhccCCCCchhHHH
Q 041183 667 LLAGSKLLELQPDNESTYVL 686 (760)
Q Consensus 667 ~~~~~~~~~~~p~~~~~~~~ 686 (760)
+..++++++..|+++.....
T Consensus 81 ~~~~~~al~~~p~~~~~~~~ 100 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQSY 100 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHH
Confidence 99999999999988765543
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.08 E-value=5.7e-06 Score=82.72 Aligned_cols=116 Identities=8% Similarity=-0.052 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041183 579 EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQSLLSACT 658 (760)
Q Consensus 579 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 658 (760)
...+..+...+.+.|++++|...|+.+.. ..|+... +...|+.+++...+. ..+|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---Hhccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHH
Confidence 45566777788888999999999988876 3343221 233444455544332 247888999999
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 041183 659 IYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKF 711 (760)
Q Consensus 659 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (760)
+.|++++|+..++++++++|++..++..++.+|...|++++|+..|++..+..
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~ 294 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999886543
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.08 E-value=1.2e-05 Score=81.18 Aligned_cols=139 Identities=12% Similarity=0.012 Sum_probs=106.9
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 041183 544 LAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVD 623 (760)
Q Consensus 544 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 623 (760)
...|..+...+.+.|++++|+..|++..+. .|+.. .... .+...+ ..+.+...|..+..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~~--~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGAK--LQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHGG--GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHHH--HHHHHHHHHHHHHH
Confidence 346888889999999999999999998872 22110 0001 111111 01123567788888
Q ss_pred HhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHH
Q 041183 624 LLGRVGLLEGAKMTIDQM-PI-PPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVG 701 (760)
Q Consensus 624 ~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 701 (760)
+|.+.|++++|++.++++ .. +.+...|..+..++...|++++|+..+++++++.|++..++..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999888877 33 4467889999999999999999999999999999999999999999999999888876
Q ss_pred HH
Q 041183 702 KL 703 (760)
Q Consensus 702 ~~ 703 (760)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 54
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.07 E-value=1.5e-05 Score=63.08 Aligned_cols=67 Identities=24% Similarity=0.194 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 644 PPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 644 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
+.++..|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|+..+++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4567889999999999999999999999999999999999999999999999999999999987753
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.99 E-value=2.6e-05 Score=81.18 Aligned_cols=128 Identities=15% Similarity=0.064 Sum_probs=93.2
Q ss_pred HhccCcHHHHHHHHHHhhhhc--CCCC----ChhHHHHHHHHhhhcCChHHHHHHHHhC---------CCCCCH-HHHHH
Q 041183 589 CCHAGLVREARTYLSCMSDLH--GLIP----QLEHYACIVDLLGRVGLLEGAKMTIDQM---------PIPPDA-HIWQS 652 (760)
Q Consensus 589 ~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ 652 (760)
+...|++++|+.++++..+.. -+-| ...+++.|+.+|...|++++|..++++. +..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456777777777776665421 1112 2466777888888888888888777765 134443 46888
Q ss_pred HHHHHHhcCChhHHHHHHHHHhc-----cCCCCchhH---HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC
Q 041183 653 LLSACTIYGNIDLGLLAGSKLLE-----LQPDNESTY---VLLSNLYASAGMWNDVGKLRKEMKEKFLCKEP 716 (760)
Q Consensus 653 l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 716 (760)
|...|...|++++|+.+++++++ ++|+++.+- ..+..++..+|++++|...+++++++-.+..|
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998 577765544 57888899999999999999999885544333
No 197
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.98 E-value=4.5e-05 Score=58.81 Aligned_cols=69 Identities=14% Similarity=0.002 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 041183 644 PPDAHIWQSLLSACTIYGN---IDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFL 712 (760)
Q Consensus 644 ~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 712 (760)
++++..+..+..++...++ .++|..+++++++++|+++.+...++..+.+.|++++|+.+|+++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5678888888888865554 79999999999999999999999999999999999999999999998754
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.94 E-value=2.5e-05 Score=63.72 Aligned_cols=78 Identities=10% Similarity=0.060 Sum_probs=64.6
Q ss_pred HHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 633 GAKMTIDQM-P-IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 633 ~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
+|++.+++. . .+.+...|..+...+...|++++|+..++++++++|+++.++..++.+|...|++++|+..+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555544 2 34567788888889999999999999999999999999999999999999999999999999987754
No 199
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=0.00011 Score=76.74 Aligned_cols=158 Identities=10% Similarity=0.019 Sum_probs=118.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCCh
Q 041183 552 MGYAQHGCYHEVSNLFNKMSKFGVKPD----------------EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQL 615 (760)
Q Consensus 552 ~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 615 (760)
..+.+.|++++|++.|.++.+..-... ...+..+...|...|++++|.+.+..+.+..+..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 445677888888888888877422111 1236778899999999999999999987633222222
Q ss_pred ----hHHHHHHHHhhhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc------C
Q 041183 616 ----EHYACIVDLLGRVGLLEGAKMTIDQM-------PIPPD-AHIWQSLLSACTIYGNIDLGLLAGSKLLEL------Q 677 (760)
Q Consensus 616 ----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~ 677 (760)
.+.+.+...+...|++++|.++++.. ...+. ..++..+...+...|++++|...++++... .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 23444555667789999999988765 22333 567888999999999999999999998873 2
Q ss_pred CCCchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 678 PDNESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 678 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
|....++..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 33456899999999999999999999998765
No 200
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.89 E-value=5e-05 Score=66.27 Aligned_cols=133 Identities=15% Similarity=0.051 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCC----hh
Q 041183 546 GWNAMMMGYAQHGCYHEVSNLFNKMSKFGVK-PD----EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQ----LE 616 (760)
Q Consensus 546 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~ 616 (760)
++..+...+...|++++|+..+++..+.... ++ ...+..+...+...|++++|...++...+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3445555566666666666666655442100 11 134555666667777777777777766541111111 34
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC----CCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 041183 617 HYACIVDLLGRVGLLEGAKMTIDQMP----IPP----DAHIWQSLLSACTIYGNIDLGLLAGSKLLELQP 678 (760)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 678 (760)
.+..+...+...|++++|.+.+++.- ... ...++..+...+...|++++|...+++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 56667777777777777777776551 111 134567778888889999999999998887543
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.89 E-value=4.3e-05 Score=58.99 Aligned_cols=81 Identities=23% Similarity=0.225 Sum_probs=67.5
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 041183 615 LEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYA 692 (760)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 692 (760)
...+..+...+...|++++|...+++.- .+.+...+..+...+...|++++|...+++++++.|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4566677777778888888888887762 34567788899999999999999999999999999999999999999887
Q ss_pred hcC
Q 041183 693 SAG 695 (760)
Q Consensus 693 ~~g 695 (760)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 765
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.87 E-value=1.1e-05 Score=68.25 Aligned_cols=84 Identities=13% Similarity=0.124 Sum_probs=63.4
Q ss_pred cCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHhccCCCCchhHHHHHHHHHhcC
Q 041183 628 VGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGN----------IDLGLLAGSKLLELQPDNESTYVLLSNLYASAG 695 (760)
Q Consensus 628 ~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 695 (760)
.+.+++|.+.++..- .+.+...|..+..++...++ +++|+..|+++++++|++..+|+.++.+|...|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 344555555555441 33455556656555555544 569999999999999999999999999999885
Q ss_pred -----------ChhHHHHHHHHHHhCC
Q 041183 696 -----------MWNDVGKLRKEMKEKF 711 (760)
Q Consensus 696 -----------~~~~A~~~~~~~~~~~ 711 (760)
++++|+..|++..+..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 8999999999988763
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.86 E-value=9.2e-05 Score=77.11 Aligned_cols=116 Identities=8% Similarity=-0.040 Sum_probs=92.1
Q ss_pred HhhhcCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhc-----cCCCC---chhHH
Q 041183 624 LLGRVGLLEGAKMTIDQM---------PIPPD-AHIWQSLLSACTIYGNIDLGLLAGSKLLE-----LQPDN---ESTYV 685 (760)
Q Consensus 624 ~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~---~~~~~ 685 (760)
.+..+|++++|..++++. +..|+ ..+++.|..+|...|++++|+.+++++++ +.|++ ..++.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988766 13343 34789999999999999999999999998 45554 45788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHhh
Q 041183 686 LLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYKELIKLYEHMVAT 757 (760)
Q Consensus 686 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 757 (760)
.|+.+|..+|++++|..++++..+-.. ..-+..||..+++...+.+.+.+++..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~~~ 451 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILL------------------VTHGPSHPITKDLEAMRMQTEMELRMF 451 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH------------------HHhCCCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999765210 011245999999999999999887754
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.73 E-value=0.00033 Score=74.93 Aligned_cols=151 Identities=13% Similarity=-0.021 Sum_probs=124.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCc----------HHHHHHHHHHhhhhcCCCCChhHHHHHHHHhh
Q 041183 558 GCYHEVSNLFNKMSKFGVKPDE-ITYLAVLTSCCHAGL----------VREARTYLSCMSDLHGLIPQLEHYACIVDLLG 626 (760)
Q Consensus 558 ~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 626 (760)
...++|++.++++.+ ..|+. ..|+.--.++...|+ ++++++.++.+.+ ..+-+...|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 345788999999999 67865 455555555555565 8999999999998 34446778888888888
Q ss_pred hcC--ChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHhccCCCCchhHHHHHHHHHhc-------
Q 041183 627 RVG--LLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYG-NIDLGLLAGSKLLELQPDNESTYVLLSNLYASA------- 694 (760)
Q Consensus 627 ~~g--~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 694 (760)
+.| +++++.+.++++- .+.+..+|+.-...+...| .++++++.++++++.+|.|..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 889 6799999999982 5678899999999999989 899999999999999999999999999999884
Q ss_pred -------CChhHHHHHHHHHHhCCC
Q 041183 695 -------GMWNDVGKLRKEMKEKFL 712 (760)
Q Consensus 695 -------g~~~~A~~~~~~~~~~~~ 712 (760)
+++++|++++++......
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCC
Confidence 567899998888776443
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.71 E-value=0.0004 Score=58.55 Aligned_cols=110 Identities=7% Similarity=-0.172 Sum_probs=72.1
Q ss_pred cHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHH
Q 041183 594 LVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQSLLSACTI----YGNIDLGLLA 669 (760)
Q Consensus 594 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~ 669 (760)
++++|...|++..+ .+ .|+.. |...|...+.+++|.++|++.-...++..+..|...|.. .+|+++|...
T Consensus 10 d~~~A~~~~~~aa~-~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACE-LN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHH-TT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHc-CC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 45556666666555 22 22221 555555555666666666655333556666667666666 6778888888
Q ss_pred HHHHhccCCCCchhHHHHHHHHHh----cCChhHHHHHHHHHHhCC
Q 041183 670 GSKLLELQPDNESTYVLLSNLYAS----AGMWNDVGKLRKEMKEKF 711 (760)
Q Consensus 670 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 711 (760)
++++.+. .++.++..|+.+|.. .+++++|..++++..+.|
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 8888776 367778888888887 788888888888777665
No 206
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.58 E-value=4.5e-05 Score=75.50 Aligned_cols=130 Identities=13% Similarity=0.144 Sum_probs=63.7
Q ss_pred ChhHHHHhhhcCCCCCcchHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCcccHHHHHHHhcCCCchhHHHHHHHHhcC
Q 041183 30 DFRRAFRFLFDTQNRDIITYNALISGLARFCQSGPALKLFDRLRYQGLRPDAFTFSSLVKACGSLQENEIVHGVCLKLGF 109 (760)
Q Consensus 30 ~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 109 (760)
++++|.++-++...|.+ |..|..+....+...+|++.|=+ .-|...|..++.++.+.|..+.+...+....-
T Consensus 40 ~ldRa~eyA~~~n~p~V--Ws~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk 111 (624)
T 3lvg_A 40 NLDRAYEFAERCNEPAV--WSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARK 111 (624)
T ss_dssp CSTTTTTSSSSCCCCCC--SSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTST
T ss_pred ccHHHHHHHHHhCCccH--HHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 44444444444443333 34445555555555554332211 12344455555555555555544333322211
Q ss_pred -CCCchhhhHHHHHHHhcCChhhHHHHhhhcCCCCceeHHHHHHHHHhcCChhHHHHHHHHH
Q 041183 110 -SSRVYLVSGFIENYAKSGEIVSAEMCFRDCLDLDNVAYTAMVCGYVWNGEFDKSKEVFVEM 170 (760)
Q Consensus 110 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 170 (760)
.-++.+=+.|+-+|++.|+..+-++++. .||+.-...+.+-|...|.++.|.-+|..+
T Consensus 112 ~~ke~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 112 KARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp TCCSTTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred HhcccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 2233444566666777766655443322 256666666667777777777666665543
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.56 E-value=0.0002 Score=56.20 Aligned_cols=63 Identities=19% Similarity=0.216 Sum_probs=33.5
Q ss_pred HHHhhhcCChHHHHHHHHhCC--CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhH
Q 041183 622 VDLLGRVGLLEGAKMTIDQMP--IPPDAH-IWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTY 684 (760)
Q Consensus 622 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 684 (760)
+..+.+.|++++|.+.++++. .+.+.. .|..+..++...|++++|+..++++++++|+++.++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 344455555555555555541 223344 555555555555555555555555555555555444
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.53 E-value=0.00011 Score=62.17 Aligned_cols=110 Identities=16% Similarity=0.080 Sum_probs=63.2
Q ss_pred CcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCC----------hHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhc
Q 041183 593 GLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGL----------LEGAKMTIDQM-P-IPPDAHIWQSLLSACTIY 660 (760)
Q Consensus 593 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~ 660 (760)
+.+++|.+.++...+ --+.+...|..+..++...++ +++|+..|++. . .+.+..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344455555555544 112234444444444444443 34666666655 2 233456677777777655
Q ss_pred -----------CChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 041183 661 -----------GNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKF 711 (760)
Q Consensus 661 -----------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (760)
|++++|++.|+++++++|++......+- ..++|-++.-.+...+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTAKAPQLHAEAYKQG 148 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHTHHHHHHHHHHSS
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHhCHhccCcccccc
Confidence 5899999999999999997653333322 2345566655555543
No 209
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.48 E-value=0.00023 Score=57.89 Aligned_cols=81 Identities=11% Similarity=-0.045 Sum_probs=57.9
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 041183 597 EARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLL 674 (760)
Q Consensus 597 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 674 (760)
.|+..|+.+.+ ..+.+...+..++..|...|++++|...+++.- .+.+...|..+..++...|++++|...+++++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666655 223345667777777777777777777777662 34456778888888888888999999988888
Q ss_pred ccCCC
Q 041183 675 ELQPD 679 (760)
Q Consensus 675 ~~~p~ 679 (760)
++.|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 87763
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.46 E-value=0.00041 Score=71.11 Aligned_cols=114 Identities=15% Similarity=0.135 Sum_probs=80.8
Q ss_pred hhhcCChHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhc-----cCCCC---chhHHH
Q 041183 625 LGRVGLLEGAKMTIDQMP---------IPPD-AHIWQSLLSACTIYGNIDLGLLAGSKLLE-----LQPDN---ESTYVL 686 (760)
Q Consensus 625 ~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~---~~~~~~ 686 (760)
+.+.|++++|.+++++.- ..|+ ..+++.|..+|...|++++|+.+++++++ +.|++ ...+..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 344556666665555430 1222 34677888888888999999988888887 34544 456888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHh
Q 041183 687 LSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYKELIKLYEHMVA 756 (760)
Q Consensus 687 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 756 (760)
|+.+|..+|++++|..++++..+--. ..-+..||..++++..|++...+++.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~~ 428 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDANIRA 428 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998765210 01124599999999999999888763
No 211
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.36 E-value=5.5e-05 Score=74.89 Aligned_cols=261 Identities=12% Similarity=0.065 Sum_probs=171.4
Q ss_pred CchhhhHHHHHHHhcCChhhHHHHhhhcCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHhccC
Q 041183 112 RVYLVSGFIENYAKSGEIVSAEMCFRDCLDLDNVAYTAMVCGYVWNGEFDKSKEVFVEMRSLGLELNEFSLTAVLGASFD 191 (760)
Q Consensus 112 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 191 (760)
.+.+|+.|.++..+.|.+.+|.+.|-. ..|...|..+|....+.|.++.-+..+...++.--.|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~-------------- 116 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-------------- 116 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--------------
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--------------
Confidence 456788888888888888888764433 3566778889999999999999888887665543223
Q ss_pred ccchhhHHHHHHhhccCCCcchhHHHHHHHHhHhcCCHHHHHHHhccCCCCCcchHHHHHHhhcChhHHHHHHHHHhhCC
Q 041183 192 VKEGEQIHGFGVKVGFLSGVCNHLNNAIMNLYVRCGQKLDAVKMFDEITEPDVVSWSERIAAACDGVEAFGLFKDLRFND 271 (760)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~~ 271 (760)
.+=+.|+-+|++.++..+-.+++..
T Consensus 117 ----------------------~IDteLi~ayAk~~rL~elEefl~~--------------------------------- 141 (624)
T 3lvg_A 117 ----------------------YVETELIFALAKTNRLAELEEFING--------------------------------- 141 (624)
T ss_dssp ----------------------TTTHHHHHHHHTSCSSSTTTSTTSC---------------------------------
T ss_pred ----------------------ccHHHHHHHHHhhCcHHHHHHHHcC---------------------------------
Confidence 2226788889998887664443332
Q ss_pred ccCCcchHHHHHHhhcCCCcchHHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcCCCCCeeeHHHHHHH
Q 041183 272 FQINEYTMINLLSSVGGERILRAGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYLIFKDSVSWNSMIAG 351 (760)
Q Consensus 272 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 351 (760)
|+......+-.-|-..|..+.|+-+|. +..-|..|..++.+.|++..|.+.-++. .++.+|..+-.+
T Consensus 142 --~N~A~iq~VGDrcf~e~lYeAAKilys---------~isN~akLAstLV~L~~yq~AVdaArKA--ns~ktWKeV~~A 208 (624)
T 3lvg_A 142 --PNNAHIQQVGDRCYDEKMYDAAKLLYN---------NVSNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFA 208 (624)
T ss_dssp --CSSSCTHHHHHHHHHSCCSTTSSTTGG---------GSCCCTTTSSSSSSCSGGGSSTTTTTTC--CSSCSHHHHTHH
T ss_pred --CCcccHHHHHHHHHHccCHHHHHHHHH---------hCccHHHHHHHHHHHHHHHHHHHHHHhc--CChhHHHHHHHH
Confidence 333344445555555666666655553 3445667777788888887775544333 477899999999
Q ss_pred HHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 041183 352 YSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNES 431 (760)
Q Consensus 352 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 431 (760)
|...+.+.-|.-.--.++- ...-...++..|...|-+++...+++..... -.....+|+-|.-.|++- ++++.
T Consensus 209 Cvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKl 281 (624)
T 3lvg_A 209 CVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKM 281 (624)
T ss_dssp HHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHH
T ss_pred HhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHH
Confidence 9999988877655444332 1122334556677888888888777765521 123556777777777765 44555
Q ss_pred HHHHhhcCC----C-------CcccHHHHHHHHHhcCChhHHH
Q 041183 432 KRVLSEIDK----K-------NAVHINALASVLVYASCHAEAL 463 (760)
Q Consensus 432 ~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~A~ 463 (760)
.+.++..-. | ....|..++..|..-.+++.|.
T Consensus 282 mEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 282 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 555443322 1 4567888888888888888665
No 212
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.29 E-value=0.0026 Score=53.42 Aligned_cols=112 Identities=11% Similarity=-0.106 Sum_probs=91.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhh----cCChHH
Q 041183 558 GCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGR----VGLLEG 633 (760)
Q Consensus 558 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 633 (760)
+++++|++.|++..+.| .|+.. |...|...+.++.|.+.|+...+ . -++..+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999999887 44444 66677777888889999999987 3 456777888888887 789999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCC
Q 041183 634 AKMTIDQMPIPPDAHIWQSLLSACTI----YGNIDLGLLAGSKLLELQP 678 (760)
Q Consensus 634 A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p 678 (760)
|.++|++.-..-++..+..|...|.. .+|.++|...++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988545678888889999888 8999999999999998864
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.28 E-value=0.0049 Score=60.20 Aligned_cols=137 Identities=12% Similarity=-0.013 Sum_probs=74.1
Q ss_pred CChHhHHHHHHHHH--HcC---CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhc---cC-----cHHHHHHHHHHhhh
Q 041183 542 DSLAGWNAMMMGYA--QHG---CYHEVSNLFNKMSKFGVKPDE-ITYLAVLTSCCH---AG-----LVREARTYLSCMSD 607 (760)
Q Consensus 542 ~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~---~g-----~~~~A~~~~~~~~~ 607 (760)
.+...|...+.+.. ..+ ...+|..+|++..+ ..|+. ..+..+..++.. .+ ........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 34455555554432 222 34678888888887 57753 444433333320 00 01111111221111
Q ss_pred hcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 041183 608 LHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP-IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDN 680 (760)
Q Consensus 608 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 680 (760)
....+.+..+|..+...+...|++++|...++++. ..|+...|..+...+.-.|++++|.+.+++++.++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 01224456666666666666677777777777662 34666666666666777777777777777777777743
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.26 E-value=0.00047 Score=70.50 Aligned_cols=103 Identities=16% Similarity=0.087 Sum_probs=69.3
Q ss_pred cCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhc-----cCCCC---chhHHHHHH
Q 041183 628 VGLLEGAKMTIDQM---------PIPPD-AHIWQSLLSACTIYGNIDLGLLAGSKLLE-----LQPDN---ESTYVLLSN 689 (760)
Q Consensus 628 ~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~---~~~~~~l~~ 689 (760)
.|++++|..++++. +..|+ ..+++.|..+|...|++++|+.+++++++ +.|++ ...+..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35556666555543 12333 34677888888888888888888888887 34544 456788889
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHHHHH
Q 041183 690 LYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYKELI 748 (760)
Q Consensus 690 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (760)
+|..+|++++|..++++..+-.. ..-+..||..++++..|.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIME------------------VAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHH------------------HHcCCCChHHHHHHHHHh
Confidence 99999999999998888665210 001235888888777665
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.25 E-value=0.00039 Score=54.53 Aligned_cols=56 Identities=23% Similarity=0.344 Sum_probs=29.5
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCch-hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 655 SACTIYGNIDLGLLAGSKLLELQPDNES-TYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 655 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
..+...|++++|+..++++++..|+++. ++..++.+|...|++++|+..+++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3344455555555555555555555555 5555555555555555555555554443
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.13 E-value=0.0024 Score=53.29 Aligned_cols=65 Identities=9% Similarity=-0.025 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhccC-C-CCchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 645 PDAHIWQSLLSACTIYG---NIDLGLLAGSKLLELQ-P-DNESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 645 p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
++..+...+.+++.+.+ +.++++.+++..++.+ | ++...++.|+.+|.+.|++++|+++++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444444444444444 3334444444444444 3 2344444444444444444444444444443
No 217
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.08 E-value=0.00081 Score=52.85 Aligned_cols=65 Identities=8% Similarity=-0.080 Sum_probs=46.7
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 041183 614 QLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQP 678 (760)
Q Consensus 614 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 678 (760)
+...+..++.+|...|++++|+..|+++- .+.+...|..+..++...|++++|++.+++++++.|
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 45566677777777777777777777662 334566777788888888888888888888887655
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.04 E-value=0.0045 Score=60.42 Aligned_cols=132 Identities=16% Similarity=0.062 Sum_probs=94.5
Q ss_pred CCCHHHHHHHHHHHh--cc---CcHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHhh---hcC-C-------hHHHHHHH
Q 041183 576 KPDEITYLAVLTSCC--HA---GLVREARTYLSCMSDLHGLIPQ-LEHYACIVDLLG---RVG-L-------LEGAKMTI 638 (760)
Q Consensus 576 ~p~~~~~~~l~~~~~--~~---g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~---~~g-~-------~~~A~~~~ 638 (760)
+.+...|...+++.. .. .+..+|..+|+++.+ ..|+ ...|..+.-+|. ..+ . ...+.+..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 346667777775533 32 346889999999998 5665 345554444442 111 1 11222222
Q ss_pred HhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 041183 639 DQMP-IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKF 711 (760)
Q Consensus 639 ~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (760)
..+. .+.++.+|..+...+...|++++|...++++++++| +...|..++.++.-.|++++|.+.+++.....
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 2332 466788888888888888999999999999999998 68888999999999999999999999987654
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.99 E-value=0.0032 Score=64.30 Aligned_cols=95 Identities=14% Similarity=-0.030 Sum_probs=66.5
Q ss_pred ccCcHHHHHHHHHHhhhhc--CCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhC---------CCCCCH-HHHHHHH
Q 041183 591 HAGLVREARTYLSCMSDLH--GLIPQ----LEHYACIVDLLGRVGLLEGAKMTIDQM---------PIPPDA-HIWQSLL 654 (760)
Q Consensus 591 ~~g~~~~A~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~ 654 (760)
..|++++|..++++..+.. -+.|+ ..+++.|+.+|...|++++|..++++. +..|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3466777777776655421 11222 356777777888888888887777765 134443 3688899
Q ss_pred HHHHhcCChhHHHHHHHHHhc-----cCCCCchhHH
Q 041183 655 SACTIYGNIDLGLLAGSKLLE-----LQPDNESTYV 685 (760)
Q Consensus 655 ~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~ 685 (760)
..|...|++++|+.+++++++ ++|++|.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 999999999999999999998 5787776554
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.94 E-value=0.0066 Score=62.16 Aligned_cols=102 Identities=12% Similarity=-0.013 Sum_probs=74.2
Q ss_pred HHHHhccCcHHHHHHHHHHhhhhc--CCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhC---------CCCCCH-HH
Q 041183 586 LTSCCHAGLVREARTYLSCMSDLH--GLIPQ----LEHYACIVDLLGRVGLLEGAKMTIDQM---------PIPPDA-HI 649 (760)
Q Consensus 586 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~ 649 (760)
+..+.+.|++++|+..+++..+.. -+.|+ ..+++.|+.+|...|++++|+.+++++ +..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556778888888887776521 12222 466788888888888888888888765 134443 36
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhc-----cCCCCchhHHHH
Q 041183 650 WQSLLSACTIYGNIDLGLLAGSKLLE-----LQPDNESTYVLL 687 (760)
Q Consensus 650 ~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~~l 687 (760)
++.|...|...|++++|+.+++++++ ++|++|.+-..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 88899999999999999999999998 578777666543
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.92 E-value=0.013 Score=54.67 Aligned_cols=86 Identities=10% Similarity=0.100 Sum_probs=69.8
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHhccCCCC-chhHHHHHHHHHhc-CChhH
Q 041183 631 LEGAKMTIDQM-PIPPD---AHIWQSLLSACTI-----YGNIDLGLLAGSKLLELQPDN-ESTYVLLSNLYASA-GMWND 699 (760)
Q Consensus 631 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 699 (760)
..+|...+++. ...|+ ...|..|...|.. .|+.++|.++|+++++++|+. ..++...+..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45566666665 35565 5688888888888 499999999999999999974 99999999999884 99999
Q ss_pred HHHHHHHHHhCCCCCCC
Q 041183 700 VGKLRKEMKEKFLCKEP 716 (760)
Q Consensus 700 A~~~~~~~~~~~~~~~~ 716 (760)
|.+++++.........|
T Consensus 259 a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 259 FDEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 99999999887654334
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.68 E-value=0.17 Score=40.37 Aligned_cols=140 Identities=16% Similarity=0.009 Sum_probs=98.0
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHH
Q 041183 555 AQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGA 634 (760)
Q Consensus 555 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 634 (760)
.-.|..++..++..+.... .+..-||.++--....-+-+-..++++.+-+-+.+. .+|+....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHH
Confidence 4468888888888887763 355666777766666666777777777776522222 23444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 041183 635 KMTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLC 713 (760)
Q Consensus 635 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 713 (760)
..-+-.+. .+....+..+..+...|+-+.-..++..++.-.|.++..+..++.+|.+.|+..+|.+++++.=++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 44443332 344455666778888899999888988876666668999999999999999999999999998888864
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.64 E-value=0.01 Score=46.80 Aligned_cols=73 Identities=21% Similarity=0.167 Sum_probs=52.7
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHH
Q 041183 616 EHYACIVDLLGRVGLLEGAKMTIDQMP---------IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVL 686 (760)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 686 (760)
..+..|+..+.+.|+++.|...++.+- ..+...++..|..++.+.|+++.|...+++++++.|+++.+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 334455555555566655555555441 12456788999999999999999999999999999998877665
Q ss_pred HH
Q 041183 687 LS 688 (760)
Q Consensus 687 l~ 688 (760)
+.
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.59 E-value=0.022 Score=44.73 Aligned_cols=65 Identities=18% Similarity=-0.034 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccC-------CCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 646 DAHIWQSLLSACTIYGNIDLGLLAGSKLLELQ-------PDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 646 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
+..-...++..+...|+++.|...++++++.. +..+.++..|+.+|.+.|++++|+.++++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45556778899999999999999999999852 345778999999999999999999999998865
No 225
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.38 E-value=1.1 Score=47.63 Aligned_cols=114 Identities=8% Similarity=-0.062 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHH
Q 041183 559 CYHEVSNLFNKMSKFG-VKPDE--ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAK 635 (760)
Q Consensus 559 ~~~~a~~~~~~m~~~g-~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 635 (760)
+.+.|...|......+ +.+.. .....+.......+...++...+..... ..++.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHHH
Confidence 6677777777665432 21211 1122222233344423445555554433 2233333333444445667777777
Q ss_pred HHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 041183 636 MTIDQMPIPP--DAHIWQSLLSACTIYGNIDLGLLAGSKLLE 675 (760)
Q Consensus 636 ~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 675 (760)
..|+.|+..+ ......=+..++...|+.++|..+|+++..
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7777775222 233333345556667777777777777764
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.30 E-value=0.015 Score=48.51 Aligned_cols=90 Identities=11% Similarity=-0.016 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChhHHH
Q 041183 595 VREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVG---LLEGAKMTIDQM-PIP-P--DAHIWQSLLSACTIYGNIDLGL 667 (760)
Q Consensus 595 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~A~ 667 (760)
...+.+-|.+..+ .-+++..+.-.+..++++.+ +.++++.++++. ... | +...+..|.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~--~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 4445555555544 22356666666777777766 455777777666 222 4 3566777888889999999999
Q ss_pred HHHHHHhccCCCCchhHHH
Q 041183 668 LAGSKLLELQPDNESTYVL 686 (760)
Q Consensus 668 ~~~~~~~~~~p~~~~~~~~ 686 (760)
+.++.+++.+|+|..+...
T Consensus 92 ~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHH
Confidence 9999999999987655543
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.09 E-value=0.39 Score=54.22 Aligned_cols=167 Identities=12% Similarity=0.137 Sum_probs=105.0
Q ss_pred HHHHhcCCccHHHH-HHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 041183 350 AGYSENGFFNQALD-MFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNAL 428 (760)
Q Consensus 350 ~~~~~~g~~~~a~~-~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (760)
......+++++|.+ ++.. .|+......++..+.+.|..+.|.++.+. . ..-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~------i~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN------VEGKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG------CCCHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc------CCchHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCH
Confidence 34455677777766 4421 11122235666677777777777766532 1 1113445678899
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 041183 429 NESKRVLSEIDKKNAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKAR 508 (760)
Q Consensus 429 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 508 (760)
+.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++.+.....|
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99988877664 457888888888899999999888888743 3444555555677776666655555544
Q ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHH
Q 041183 509 YDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNK 569 (760)
Q Consensus 509 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 569 (760)
. ++.-..+|.+.|++++|.+++ .+.+++++|..+-+.
T Consensus 738 ~------~~~A~~~~~~~g~~~~a~~~~------------------~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 738 K------FNLAFNAYWIAGDIQGAKDLL------------------IKSQRFSEAAFLGST 774 (814)
T ss_dssp C------HHHHHHHHHHHTCHHHHHHHH------------------HHTTCHHHHHHHHHH
T ss_pred c------hHHHHHHHHHcCCHHHHHHHH------------------HHcCChHHHHHHHHH
Confidence 2 334445566677777777664 455777777766543
No 228
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.03 E-value=0.043 Score=41.89 Aligned_cols=68 Identities=10% Similarity=-0.015 Sum_probs=54.9
Q ss_pred CCChhHHHHHHHHhhhcCC---hHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 041183 612 IPQLEHYACIVDLLGRVGL---LEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPD 679 (760)
Q Consensus 612 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 679 (760)
+.++..+..+..++...++ .++|..++++.- .+.++..+..+...+...|++++|+..|+++++.+|+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566777788887765544 788888888872 4566778888888999999999999999999999986
No 229
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.70 E-value=0.32 Score=54.98 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=22.3
Q ss_pred HhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 041183 524 CKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKM 570 (760)
Q Consensus 524 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 570 (760)
...|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445555555554433 22344555555555555555555555544
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.59 E-value=0.072 Score=42.66 Aligned_cols=88 Identities=10% Similarity=-0.021 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHH---HHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCChhHH
Q 041183 594 LVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEG---AKMTIDQMP-IP-P--DAHIWQSLLSACTIYGNIDLG 666 (760)
Q Consensus 594 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~-~~-p--~~~~~~~l~~~~~~~~~~~~A 666 (760)
....+.+-|..... .+ .++..+--.+..++++..+... ++.++++.- .. | .......|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~-~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHH-HS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 33444444444433 11 2444444455555555554433 455555442 11 2 122333444445555555555
Q ss_pred HHHHHHHhccCCCCchh
Q 041183 667 LLAGSKLLELQPDNEST 683 (760)
Q Consensus 667 ~~~~~~~~~~~p~~~~~ 683 (760)
.+..+.+++..|+|..+
T Consensus 94 ~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhCCCCHHH
Confidence 55555555555544433
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.07 E-value=0.021 Score=53.28 Aligned_cols=105 Identities=17% Similarity=0.127 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhhhhcCCCCC---hhHHHHHHHHhhhc-----CChHHHHHHHHhC-CCCC--CHHHHHHHHHHHHh-cCC
Q 041183 595 VREARTYLSCMSDLHGLIPQ---LEHYACIVDLLGRV-----GLLEGAKMTIDQM-PIPP--DAHIWQSLLSACTI-YGN 662 (760)
Q Consensus 595 ~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~-~~~ 662 (760)
...|...++++.+ +.|+ ...|..|+..|.+. |+.++|.+.|++. .+.| +..++......++. .|+
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 3455555555555 4454 34566666666663 6777777777666 2444 25666666666666 377
Q ss_pred hhHHHHHHHHHhccCCCC-chhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041183 663 IDLGLLAGSKLLELQPDN-ESTYVLLSNLYASAGMWNDVGKLRKEMK 708 (760)
Q Consensus 663 ~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (760)
.++|.+.+++++...|.. |. ..+ ...++-++|..++.++.
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~--~~l----an~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPH--NKL----LVILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSS--CHH----HHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCCCCCCCC--hhH----HHHHHHHHHHHHHHHhH
Confidence 888888888888876632 22 122 22333456666655543
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.03 E-value=0.092 Score=56.98 Aligned_cols=55 Identities=15% Similarity=0.052 Sum_probs=51.3
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041183 654 LSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMK 708 (760)
Q Consensus 654 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (760)
..-|...|+++.|+.+.++++...|.+..+|..|+.+|...|+|+.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4557788999999999999999999999999999999999999999999999874
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.93 E-value=0.24 Score=39.62 Aligned_cols=65 Identities=9% Similarity=-0.062 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHhcCChhH---HHHHHHHHhccC-C-CCchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 645 PDAHIWQSLLSACTIYGNIDL---GLLAGSKLLELQ-P-DNESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 645 p~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
|+..+-..+.+++.+..+... ++.+++...... | ......+.|+.++.+.|+|++|+++++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444445555544443332 555555555444 3 2344455555555555555555555555443
No 234
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.76 E-value=6.5 Score=43.70 Aligned_cols=302 Identities=12% Similarity=0.024 Sum_probs=149.3
Q ss_pred HHHHHHHHhcCCccHH-HHHHH-HHHHCCCCCCHhhHHH-HHHHhcCcCCHHHHHHHHHHHHHhCCCCCh--hHHHHHHH
Q 041183 346 NSMIAGYSENGFFNQA-LDMFC-HMLEFSLIPNGYTMAS-ILEAVSNSKSLKQAMQVHSHIIKSGFLLDD--SMISCLIT 420 (760)
Q Consensus 346 ~~li~~~~~~g~~~~a-~~~~~-~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~ 420 (760)
.++.+++...|-.... +.... .+-+. -+..-+.+ .--+....|+.+++..+++.....+-..+. ..-..+.-
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~---~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaL 419 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA---QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGL 419 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC---CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc---chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHH
Confidence 3556777777754333 22221 22221 12222222 233456677777777766554432101122 22233334
Q ss_pred HHHhcCChHHHHHHHhhcCC-CC--------cc--cHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCChhHHH--HHHH
Q 041183 421 TYGKCNALNESKRVLSEIDK-KN--------AV--HINALASVLVYASC-HAEALELYRTIWGSCREVNGSTFS--IVLK 486 (760)
Q Consensus 421 ~~~~~~~~~~A~~~~~~~~~-~~--------~~--~~~~l~~~~~~~~~-~~~A~~~~~~m~~~~~~~~~~~~~--~ll~ 486 (760)
+...+|..+++..++..... .+ .. .-..+.-+++-.|. -+++.+.+..+....- +...... .+..
T Consensus 420 Gli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGl 498 (963)
T 4ady_A 420 GLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGL 498 (963)
T ss_dssp HHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhh
Confidence 45556665566665554332 12 10 11222233333333 2456666666554321 1111122 2233
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHH--HhcCCHHHHHHHHHhcC-CCChH-hHH---HHHHHHHHcCC
Q 041183 487 ACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMY--CKCGTIEDAKRAFRKIC-RDSLA-GWN---AMMMGYAQHGC 559 (760)
Q Consensus 487 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~-~~~~~-~~~---~l~~~~~~~~~ 559 (760)
.+...|+.+....++..+.+.. +..+...+..++ ...|+.+.+..+++.+. ..+.. -|. ++.-+|+..|+
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC
T ss_pred hhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC
Confidence 3557778888888887776532 333333344433 35677777777766664 23333 232 33445667778
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCCh-HHHHHHH
Q 041183 560 YHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLL-EGAKMTI 638 (760)
Q Consensus 560 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~ 638 (760)
.....++++.+.+. ...+......+.-++...|+.+.+.++++.+.+ ...|.+..-..+.-+....|.. .++++.+
T Consensus 576 ~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 576 NSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp HHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred HHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 77777788887763 122222233333345556666666777766655 2345544444444444445543 5777788
Q ss_pred HhCCCCCCHHHHHHHHHHH
Q 041183 639 DQMPIPPDAHIWQSLLSAC 657 (760)
Q Consensus 639 ~~~~~~p~~~~~~~l~~~~ 657 (760)
..+...++..+-...+.++
T Consensus 653 ~~L~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 653 DPLTKDPVDFVRQAAMIAL 671 (963)
T ss_dssp HHHHTCSSHHHHHHHHHHH
T ss_pred HHHccCCCHHHHHHHHHHH
Confidence 7775556655544444443
No 235
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.71 E-value=0.18 Score=40.43 Aligned_cols=68 Identities=7% Similarity=-0.001 Sum_probs=50.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHhccCCC-CchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 643 IPPDAHIWQSLLSACTIYGNI---DLGLLAGSKLLELQPD-NESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 643 ~~p~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
-.|++.+--.+.+++.+..+. .+++.+++.+.+..|. ....++.|+.++.+.|++++|+++.+.+.+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 356677777777777766544 4677888888877773 4677888888888888888888888887754
No 236
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.70 E-value=0.68 Score=37.75 Aligned_cols=65 Identities=8% Similarity=0.004 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHhcCCh---hHHHHHHHHHhccCC-CCchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 645 PDAHIWQSLLSACTIYGNI---DLGLLAGSKLLELQP-DNESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 645 p~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
|+..+-..+.+++.+..+. .+++.+++......| ......+.|+-.+.+.|+|++|+++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4444444444444443322 244444444444444 2334444444555555555555555554443
No 237
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.48 E-value=0.18 Score=42.40 Aligned_cols=139 Identities=17% Similarity=0.125 Sum_probs=80.1
Q ss_pred CCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCCh-------hHHHHHHHHhhhcCChHHHHHHHHhC--
Q 041183 573 FGVKPDE--ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQL-------EHYACIVDLLGRVGLLEGAKMTIDQM-- 641 (760)
Q Consensus 573 ~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-- 641 (760)
.|+.|.. .++..-+..+...|.++.|+-+.+.+....+..|+. .++..+++++...|++.+|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4566643 445555677888889999888877765522233432 35566777888888888888877764
Q ss_pred -----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC
Q 041183 642 -----PIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEP 716 (760)
Q Consensus 642 -----~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 716 (760)
...++. ..++. . ... ...-..+ +.+...-+.++.+|.+.|++++|+.+++.+..+
T Consensus 92 ~~k~l~k~~s~--~~~~~-~---~ss-------~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k------ 151 (167)
T 3ffl_A 92 QKKALSKTSKV--RPSTG-N---SAS-------TPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR------ 151 (167)
T ss_dssp HHHCC---------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG------
T ss_pred HHHHHhcCCCc--ccccc-c---cCC-------Ccccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch------
Confidence 111111 11110 0 000 0000112 335577788999999999999999999865332
Q ss_pred ceeEEEECCEEEEEEcCCCCCCChHHHHHHHHHHHH
Q 041183 717 GYSWIHVGGYTHHFYAGDSSHSQSKEIYKELIKLYE 752 (760)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (760)
-....+...|++||+
T Consensus 152 ---------------------~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 152 ---------------------QRTPKINMLLANLYK 166 (167)
T ss_dssp ---------------------GCCHHHHHHHHHHCC
T ss_pred ---------------------hcCHHHHHHHHHHhc
Confidence 234678888888875
No 238
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.47 E-value=2.1 Score=36.70 Aligned_cols=100 Identities=9% Similarity=0.055 Sum_probs=49.2
Q ss_pred HHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHH
Q 041183 422 YGKCNALNESKRVLSEIDKKNAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIH 501 (760)
Q Consensus 422 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 501 (760)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+...++-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34455555555555544 2344555555555555555555555555422 233333444455555555444
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHh
Q 041183 502 CLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRK 538 (760)
Q Consensus 502 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 538 (760)
+.....|- ++.-...+.-.|+++++.++|.+
T Consensus 84 ~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 84 NIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44443331 33334444555666665555533
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.00 E-value=1.9 Score=34.55 Aligned_cols=60 Identities=15% Similarity=0.073 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 041183 547 WNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSD 607 (760)
Q Consensus 547 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (760)
....+..+...|+-++..+++..+... ..|++.....+..||.+.|+..+|.+++.++-+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 344455556666666666666664322 455666666666666666666666666666665
No 240
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.83 E-value=10 Score=42.23 Aligned_cols=249 Identities=11% Similarity=-0.024 Sum_probs=130.9
Q ss_pred HHHhcCChHHHHHHHhhcCCC----Ccc--cHHHHHHHHHhcCChhHHHHHHHHHHhCCC--C-----CChhHHHH--HH
Q 041183 421 TYGKCNALNESKRVLSEIDKK----NAV--HINALASVLVYASCHAEALELYRTIWGSCR--E-----VNGSTFSI--VL 485 (760)
Q Consensus 421 ~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~--~-----~~~~~~~~--ll 485 (760)
+....|+.+++...++..... +.. .-..+.-+.+..|...++..++.......- . +....-.. |-
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 456678888888888877642 111 122333455666666678887777654321 0 11111122 22
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCc--hHHHHHHHHHHhcCCHHHHHHHHHhcC-CCChH--hHHHHHHHHHHcCCH
Q 041183 486 KACAAMTDLEQGKAIHCLALKARYDQDI--FVESAVIDMYCKCGTIEDAKRAFRKIC-RDSLA--GWNAMMMGYAQHGCY 560 (760)
Q Consensus 486 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~--~~~~l~~~~~~~~~~ 560 (760)
.++...++- .+.+.+..+....- +.. ..--+|...++-.|+-+....++..+. ..+.. -.-.+.-++...|+.
T Consensus 463 la~~GS~~e-ev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSANI-EVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCCH-HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCCH-HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 233334443 34444444443221 111 111233344556677776677766543 22222 233344455567888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHH---HHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHH
Q 041183 561 HEVSNLFNKMSKFGVKPDEITYL---AVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMT 637 (760)
Q Consensus 561 ~~a~~~~~~m~~~g~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 637 (760)
+.+..+.+.+... -.| ..-|. .+.-+|+..|+.....+++..+.+ ....++.-...+.-++...|+.+.+.++
T Consensus 541 e~~~~li~~L~~~-~dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 541 ELADDLITKMLAS-DES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGHHHHHHHHHC-SCH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHHhC-CCH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 8888888887763 122 22333 334578888998877778888887 2233344344444455556777667777
Q ss_pred HHhCCCCCCHHHH--HHHHHHHHhcCCh-hHHHHHHHHHhc
Q 041183 638 IDQMPIPPDAHIW--QSLLSACTIYGNI-DLGLLAGSKLLE 675 (760)
Q Consensus 638 ~~~~~~~p~~~~~--~~l~~~~~~~~~~-~~A~~~~~~~~~ 675 (760)
++.+....|+.+- ..+.-+....|.. .+|+..+..+..
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 7655323333333 3333334444443 567777777764
No 241
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.78 E-value=2.9 Score=40.11 Aligned_cols=132 Identities=19% Similarity=0.139 Sum_probs=84.3
Q ss_pred hhhhhHHHHhhccCChhHHHHhhhcCCCCCcchHHHHHHHHHhcCCcchHHHHH----HHHHhCCCCCCcccHHHHHHHh
Q 041183 16 ILSTTLISHFTKFADFRRAFRFLFDTQNRDIITYNALISGLARFCQSGPALKLF----DRLRYQGLRPDAFTFSSLVKAC 91 (760)
Q Consensus 16 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~----~~m~~~~~~p~~~~~~~ll~~~ 91 (760)
.+|.++..-|.+.+++++|++++-. -...+.+.|+...|-++- +.+.+.++++|......|+..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3677778888888888888887632 234455566665544443 5666678888888877777777
Q ss_pred cCCCchh--------HHHHHHHHhc--CCCCchhhhHHHHHHHhcCChhhHHHHhhhcCCCCceeHHHHHHHHHhcC
Q 041183 92 GSLQENE--------IVHGVCLKLG--FSSRVYLVSGFIENYAKSGEIVSAEMCFRDCLDLDNVAYTAMVCGYVWNG 158 (760)
Q Consensus 92 ~~~~~~~--------~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 158 (760)
......+ +...+-.+.| ...|+.....+...|.+.+++..|+.-|-...+++...|..++.-+...+
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 6555432 3344444445 34567888888899999999999988764322233345544444444433
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.69 E-value=0.76 Score=37.79 Aligned_cols=58 Identities=12% Similarity=-0.073 Sum_probs=35.2
Q ss_pred CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHH
Q 041183 629 GLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVL 686 (760)
Q Consensus 629 g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 686 (760)
++.++|.++|+.+. .+.=...|.....--.++|+...|..++.+++.+.|.+...+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 45555555555441 01115556666666677888888888888888888755544443
No 243
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.34 E-value=4.9 Score=34.43 Aligned_cols=43 Identities=12% Similarity=0.312 Sum_probs=18.1
Q ss_pred hcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHH
Q 041183 525 KCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNK 569 (760)
Q Consensus 525 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 569 (760)
..|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 334444444443333 2233444444444444444444444443
No 244
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.09 E-value=1.1 Score=36.81 Aligned_cols=54 Identities=9% Similarity=-0.154 Sum_probs=45.1
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 041183 659 IYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFL 712 (760)
Q Consensus 659 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 712 (760)
..+|.++|.++|+.++.+...-+.+|...+.--.++|+.+.|++++.+....+.
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 348999999999999887555577888888888899999999999998876543
No 245
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.36 E-value=13 Score=35.49 Aligned_cols=111 Identities=7% Similarity=0.022 Sum_probs=71.1
Q ss_pred hHHHHhhhcCCChHHHHHHHhcCCCCCeeeHHHHHHHHHhcCCccHHHH----HHHHHHHCCCCCCHhhHHHHHHHhcCc
Q 041183 315 NALISMYGKCGQVNDARSIFDYLIFKDSVSWNSMIAGYSENGFFNQALD----MFCHMLEFSLIPNGYTMASILEAVSNS 390 (760)
Q Consensus 315 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~~~~p~~~~~~~ll~~~~~~ 390 (760)
.++..-|.+.+++++|.+++..- ...+.+.|+...|-+ +++.+.+.+++++......++..+...
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 45555577888899988886442 334555666555444 456666678888888877777776553
Q ss_pred CCH-HHHHHHHHHHHH----hC--CCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 041183 391 KSL-KQAMQVHSHIIK----SG--FLLDDSMISCLITTYGKCNALNESKRVLS 436 (760)
Q Consensus 391 ~~~-~~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 436 (760)
..- ..-.++++.+++ .| ..-++.....+...|.+.|++.+|...|-
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 311 122344444443 22 22366777888888888888888888775
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.65 E-value=1.9 Score=36.21 Aligned_cols=28 Identities=14% Similarity=0.125 Sum_probs=18.4
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhCC
Q 041183 615 LEHYACIVDLLGRVGLLEGAKMTIDQMP 642 (760)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 642 (760)
.+.--.+..+|.+.+++++|+.+++.++
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 3444446667777777777777777765
No 247
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.04 E-value=1.8 Score=34.76 Aligned_cols=75 Identities=11% Similarity=0.010 Sum_probs=47.8
Q ss_pred CCChhHHHHHHHHhhhcCCh---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHH
Q 041183 612 IPQLEHYACIVDLLGRVGLL---EGAKMTIDQM-PIPP--DAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYV 685 (760)
Q Consensus 612 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 685 (760)
.|++.+--.+..++++..+. .+++.++++. ...| ....+.-|.-++.+.|++++|.+..+.+++..|+|..+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 34444444555555555433 3455555544 1223 2445666777888999999999999999999998765554
Q ss_pred H
Q 041183 686 L 686 (760)
Q Consensus 686 ~ 686 (760)
.
T Consensus 117 L 117 (134)
T 3o48_A 117 L 117 (134)
T ss_dssp H
T ss_pred H
Confidence 3
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.52 E-value=4.8 Score=32.83 Aligned_cols=74 Identities=9% Similarity=-0.008 Sum_probs=49.9
Q ss_pred CCChhHHHHHHHHhhhcCCh---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHH
Q 041183 612 IPQLEHYACIVDLLGRVGLL---EGAKMTIDQM-PIPP--DAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYV 685 (760)
Q Consensus 612 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 685 (760)
.|+..+--.+..++++..+. .+++.++++. ...| .......|.-++.+.|++++|.++.+.+++.+|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45555555566666655543 3455555555 1223 3445566777899999999999999999999998765544
No 249
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.43 E-value=18 Score=34.67 Aligned_cols=168 Identities=12% Similarity=0.043 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHh
Q 041183 515 VESAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNL----FNKMSKFGVKPDEITYLAVLTSCC 590 (760)
Q Consensus 515 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~~~~~l~~~~~ 590 (760)
+|.++..=|.+.+++++|.+++.. -...+.+.|+...+.++ ++-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456667778889999999987643 23445666776655444 355566778888877777777665
Q ss_pred ccCcHH-HHHHHHHHhhh---hcC--CCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 041183 591 HAGLVR-EARTYLSCMSD---LHG--LIPQLEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQSLLSACTIYGNID 664 (760)
Q Consensus 591 ~~g~~~-~A~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 664 (760)
....-+ .=..+++.+.+ +.| -.-++.....+...|.+.+++.+|...|- ....+.+..+..++..+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCCc
Confidence 544311 11222222221 123 23367788889999999999999999884 233445577777766665554322
Q ss_pred HHHHHHHHHhccCCCCchhHH-HHHHHHHhcCChhHHHHHHHHHHh
Q 041183 665 LGLLAGSKLLELQPDNESTYV-LLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 665 ~A~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
+...|. ..+--|.-.|+...|...++...+
T Consensus 185 ---------------e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 ---------------TAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ---------------GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------cHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 222222 233457778899999988777654
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.34 E-value=1.2 Score=44.62 Aligned_cols=69 Identities=14% Similarity=0.025 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCCc
Q 041183 649 IWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKE-----KFLCKEPG 717 (760)
Q Consensus 649 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 717 (760)
+...++..+...|++++|+..+..++..+|-+...+..++.+|.+.|+..+|++.|++..+ -|+.|.+.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3455677788899999999999999999999999999999999999999999999988654 46666554
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.38 E-value=3.4 Score=31.13 Aligned_cols=63 Identities=19% Similarity=0.248 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 041183 559 CYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVD 623 (760)
Q Consensus 559 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 623 (760)
+.-++.+-++.+....+.|+.......++||.+.+++..|.++|+.++.+ +.+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 44566677778888889999999999999999999999999999999874 3344556766664
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.17 E-value=5 Score=36.90 Aligned_cols=118 Identities=15% Similarity=0.143 Sum_probs=71.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCCh----hHHHHHHHHhhh
Q 041183 553 GYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQL----EHYACIVDLLGR 627 (760)
Q Consensus 553 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 627 (760)
.+.+.|+.+++++....-.+. .| |...-..|+..+|-.|++++|.+-++...+ ..|+. ..|..+|.+=
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~aE-- 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAA-- 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHH--
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHHH--
Confidence 445677888888877777663 55 556666677888888888888888777766 44543 3344443321
Q ss_pred cCChHHHH-HHHHhC--C--CCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHhccCCCCch
Q 041183 628 VGLLEGAK-MTIDQM--P--IPPDAHIWQSLLSAC--TIYGNIDLGLLAGSKLLELQPDNES 682 (760)
Q Consensus 628 ~g~~~~A~-~~~~~~--~--~~p~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~p~~~~ 682 (760)
... ++|..- + ......-...++.+. ...|+.+.|.++-.++.+..|..+.
T Consensus 79 -----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 79 -----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp -----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred -----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 111 223221 1 122223334455554 3468888888888888888775443
No 253
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.94 E-value=22 Score=36.24 Aligned_cols=185 Identities=9% Similarity=0.003 Sum_probs=117.6
Q ss_pred cCChhHHHHHHHHHHhC-----CCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHH----HHhc
Q 041183 456 ASCHAEALELYRTIWGS-----CREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDM----YCKC 526 (760)
Q Consensus 456 ~~~~~~A~~~~~~m~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~ 526 (760)
.|++++|++.+-.+.+. ...........++..|...++++...+.+..+.+..-.. ......+++. ....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 37788898888766542 234456678889999999999999988877766532222 2222333332 2223
Q ss_pred CCHH--HHHHHHHhcC---CCCh-------HhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHH
Q 041183 527 GTIE--DAKRAFRKIC---RDSL-------AGWNAMMMGYAQHGCYHEVSNLFNKMSKF--GVKPD---EITYLAVLTSC 589 (760)
Q Consensus 527 ~~~~--~A~~~~~~~~---~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~---~~~~~~l~~~~ 589 (760)
...+ .-..+.+.+. ..-+ .....|...+...|++.+|..++.++... |..+. ...+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3222 2233333332 1111 12356788899999999999999998643 32222 23455566789
Q ss_pred hccCcHHHHHHHHHHhhhh-cCCC--CC--hhHHHHHHHHhhhcCChHHHHHHHHhC
Q 041183 590 CHAGLVREARTYLSCMSDL-HGLI--PQ--LEHYACIVDLLGRVGLLEGAKMTIDQM 641 (760)
Q Consensus 590 ~~~g~~~~A~~~~~~~~~~-~~~~--~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 641 (760)
...+++..|..++..+... .... |+ ...+...+..+...+++.+|.+.|.++
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999999999987531 1122 22 245677777888889999988776554
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.65 E-value=7.8 Score=45.25 Aligned_cols=144 Identities=14% Similarity=0.111 Sum_probs=90.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCC----CC-----h--------
Q 041183 482 SIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICR----DS-----L-------- 544 (760)
Q Consensus 482 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~-----~-------- 544 (760)
..++..+...+..+.+.++... .+.++...-.+..++...|++++|.+.|.+... .+ .
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 3455566666776666554322 233444445567778888999999999987621 00 0
Q ss_pred ---------HhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCC
Q 041183 545 ---------AGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDE----ITYLAVLTSCCHAGLVREARTYLSCMSDLHGL 611 (760)
Q Consensus 545 ---------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 611 (760)
.=|..++..|.+.+.++.++++-....+..-.-+. ..|..+..++...|++++|...+-.+.. .
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd---~ 967 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST---T 967 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH---S
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC---H
Confidence 01556677777788888888777766654211111 1456677778888888888877776654 2
Q ss_pred CCChhHHHHHHHHhhhcCChHH
Q 041183 612 IPQLEHYACIVDLLGRVGLLEG 633 (760)
Q Consensus 612 ~~~~~~~~~l~~~~~~~g~~~~ 633 (760)
.--...+..|+..++..|..+.
T Consensus 968 ~~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 968 PLKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp SSCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCChhh
Confidence 2334567777777777666544
No 255
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.10 E-value=9 Score=28.72 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 041183 493 DLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSK 572 (760)
Q Consensus 493 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 572 (760)
..++|..|-+-+...+. ...+--+-+..+...|++++|..+.+.++.||+.+|-.|.. .+.|-.+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666665555442 22222223445678899999999999999999999987755 467888888888877777
Q ss_pred CCCCCCHHHHH
Q 041183 573 FGVKPDEITYL 583 (760)
Q Consensus 573 ~g~~p~~~~~~ 583 (760)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 45444443
No 256
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.09 E-value=12 Score=37.02 Aligned_cols=163 Identities=9% Similarity=-0.056 Sum_probs=82.0
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCC---CchHHHHHHHHHHhcC-CHHHHHHHHHhcC---CCChHhH---
Q 041183 479 STFSIVLKACAAMTDLEQGKAIHCLALKA-RYDQ---DIFVESAVIDMYCKCG-TIEDAKRAFRKIC---RDSLAGW--- 547 (760)
Q Consensus 479 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~---~~~~~~~--- 547 (760)
.....+...+.+.|+.++..+++...... +.-+ .......+++.+.... ..+.-.++..+.. ...-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777665441 1111 1233445555555432 2222223332221 1111122
Q ss_pred ---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHhhhhc-CCCCChhHH
Q 041183 548 ---NAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDE-----ITYLAVLTSCCHAGLVREARTYLSCMSDLH-GLIPQLEHY 618 (760)
Q Consensus 548 ---~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 618 (760)
..++..|...|++.+|.+++.++.+.--+.|. ..+..-+..|...+++..+...+....... .+.+++.+.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 24666777777777777777776653222221 223334455667777777777776665421 122332221
Q ss_pred ----HHHHHHhh-hcCChHHHHHHHHhC
Q 041183 619 ----ACIVDLLG-RVGLLEGAKMTIDQM 641 (760)
Q Consensus 619 ----~~l~~~~~-~~g~~~~A~~~~~~~ 641 (760)
..-+-.+. ..+++.+|...|-+.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 11122234 566777776666553
No 257
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.49 E-value=8.4 Score=28.83 Aligned_cols=86 Identities=13% Similarity=0.037 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 041183 493 DLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSK 572 (760)
Q Consensus 493 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 572 (760)
..++|..|-+-+...+. ...+--+-+..+...|++++|..+.+.++.||+.+|-.|.. .+.|-.+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666665555442 22222222445678899999999999999999999987755 577888888888878877
Q ss_pred CCCCCCHHHHH
Q 041183 573 FGVKPDEITYL 583 (760)
Q Consensus 573 ~g~~p~~~~~~ 583 (760)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 45444443
No 258
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=83.98 E-value=38 Score=36.23 Aligned_cols=85 Identities=12% Similarity=0.064 Sum_probs=42.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh--
Q 041183 448 ALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCK-- 525 (760)
Q Consensus 448 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 525 (760)
....++.-.|+++.|++.+... ...+.+.+...+.-+.-.+- ...++..- .+ .| ..-+..||..|.+
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSF 367 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHh
Confidence 3556667788888888877654 23444455554444332221 11111110 01 11 2235566767754
Q ss_pred -cCCHHHHHHHHHhcCCCC
Q 041183 526 -CGTIEDAKRAFRKICRDS 543 (760)
Q Consensus 526 -~~~~~~A~~~~~~~~~~~ 543 (760)
..+..+|.++|--+...+
T Consensus 368 ~~td~~~Al~Y~~li~l~~ 386 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLITLNE 386 (661)
T ss_dssp TTTCHHHHHHHHHGGGGSC
T ss_pred hcCCHHHHHHHHHHHhccC
Confidence 578888888887775443
No 259
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=83.89 E-value=30 Score=32.89 Aligned_cols=171 Identities=10% Similarity=-0.048 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHH----HHHHHHHCCCCCCHHHHHHHHHHH
Q 041183 514 FVESAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSN----LFNKMSKFGVKPDEITYLAVLTSC 589 (760)
Q Consensus 514 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~~~~~l~~~~ 589 (760)
..|.++..=|.+.+++++|.+++.. -...+.+.|++..|.+ +.+-..+.++.++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3456677778888999999988643 2345566777766555 455566678888888877777766
Q ss_pred hccCcHH-HHHHHHHHhhh---hcCC--CCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---
Q 041183 590 CHAGLVR-EARTYLSCMSD---LHGL--IPQLEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQSLLSACTIY--- 660 (760)
Q Consensus 590 ~~~g~~~-~A~~~~~~~~~---~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~--- 660 (760)
..-..-+ .=.++++.+.+ +.|- .-++.....+...|.+.|++.+|...|-... ..++..+..++.-+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHHHHHHHHHHhcCC
Confidence 5432111 11222333321 0222 2367888899999999999999998876322 22466666666665554
Q ss_pred CChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 661 GNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 661 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
|...++--.. ...+--|.-.|+...|...++...++
T Consensus 182 ~~~~e~dlf~--------------~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 182 IEDSTVAEFF--------------SRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CCHHHHHHHH--------------HHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCcchHHHHH--------------HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4333322111 12223466789999999998876543
No 260
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.75 E-value=7.2 Score=31.21 Aligned_cols=63 Identities=19% Similarity=0.248 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 041183 559 CYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVD 623 (760)
Q Consensus 559 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 623 (760)
+.-+..+-++.+....+.|+.......+.+|.+.+|+..|.++|+.++.+ ..+...+|..++.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 34456667777777889999999999999999999999999999999884 4444666776664
No 261
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.72 E-value=14 Score=40.32 Aligned_cols=53 Identities=11% Similarity=-0.103 Sum_probs=45.4
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 041183 487 ACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC 540 (760)
Q Consensus 487 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 540 (760)
-|...|+++.|.++-++.+... +.+-.+|..|..+|...|+++.|+-.++.++
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3556889999999999998875 4568899999999999999999999998774
No 262
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=81.61 E-value=10 Score=36.91 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=23.9
Q ss_pred HHHHHHhHhcCCHHHHHHHhccCCCCC
Q 041183 217 NAIMNLYVRCGQKLDAVKMFDEITEPD 243 (760)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~~~~~~ 243 (760)
+.++.-|...|+.++|.+.++++..|.
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~ 247 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPH 247 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTT
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCc
Confidence 778888999999999999999998764
No 263
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=81.24 E-value=16 Score=34.03 Aligned_cols=18 Identities=11% Similarity=0.025 Sum_probs=12.0
Q ss_pred HHHhHhcCCHHHHHHHhc
Q 041183 220 MNLYVRCGQKLDAVKMFD 237 (760)
Q Consensus 220 i~~~~~~g~~~~A~~~~~ 237 (760)
+...++.|+.+-+..+++
T Consensus 223 L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 223 LILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHh
Confidence 344556677777777776
No 264
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=79.97 E-value=8.5 Score=29.05 Aligned_cols=59 Identities=10% Similarity=0.198 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 041183 360 QALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLI 419 (760)
Q Consensus 360 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 419 (760)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++.+...- .....+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 444555566666677777777777888877788888887777766442 12234455544
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.84 E-value=15 Score=27.49 Aligned_cols=50 Identities=12% Similarity=0.024 Sum_probs=38.3
Q ss_pred HhHhcCCHHHHHHHhccCCCCCcchHHHHHHhhc-ChhHHHHHHHHHhhCC
Q 041183 222 LYVRCGQKLDAVKMFDEITEPDVVSWSERIAAAC-DGVEAFGLFKDLRFND 271 (760)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~-~~~~a~~~~~~m~~~~ 271 (760)
.+...|++++|..+.+...-||..+|-++-..-. -...+...+..+..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNPWPALEPWFALCEWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHHHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 4567899999999999999999999988877766 4444455555666655
No 266
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=79.65 E-value=9.2 Score=38.18 Aligned_cols=70 Identities=13% Similarity=0.038 Sum_probs=52.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhh----hcCCCCChhHH
Q 041183 547 WNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSD----LHGLIPQLEHY 618 (760)
Q Consensus 547 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~ 618 (760)
...++..+...|++++++..+..+.. ..| +...+..++.++.+.|+..+|++.|+.+.+ +.|+.|+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34456677778888888888888776 456 667888888888888888888888887654 34777776543
No 267
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.39 E-value=57 Score=33.08 Aligned_cols=143 Identities=11% Similarity=0.102 Sum_probs=77.4
Q ss_pred CChHHHHHHHhhcCC-----C----CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHH----hccC
Q 041183 426 NALNESKRVLSEIDK-----K----NAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKAC----AAMT 492 (760)
Q Consensus 426 ~~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~----~~~~ 492 (760)
|+++.|.+.+..+.+ . .......++..|...++++...+.+.-+....-.. ......++..+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 567777776655442 1 23345567777888888887777666554432121 12222333322 2223
Q ss_pred CHHHHHHHHHHHHH--cCCCC--------CchHHHHHHHHHHhcCCHHHHHHHHHhcC----CCC-----hHhHHHHHHH
Q 041183 493 DLEQGKAIHCLALK--ARYDQ--------DIFVESAVIDMYCKCGTIEDAKRAFRKIC----RDS-----LAGWNAMMMG 553 (760)
Q Consensus 493 ~~~~a~~~~~~~~~--~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~-----~~~~~~l~~~ 553 (760)
+.+.... ....+ ..+.. .......|...|...|++.+|..++..+. ..+ +..+...+..
T Consensus 109 ~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 109 SLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp TTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred chhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 2222111 11111 11111 11233567777888888888888887763 111 2246666777
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 041183 554 YAQHGCYHEVSNLFNKMS 571 (760)
Q Consensus 554 ~~~~~~~~~a~~~~~~m~ 571 (760)
|...+++..|..++.++.
T Consensus 187 ~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 888888888888887764
No 268
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=79.31 E-value=16 Score=27.40 Aligned_cols=50 Identities=14% Similarity=0.150 Sum_probs=37.3
Q ss_pred HhHhcCCHHHHHHHhccCCCCCcchHHHHHHhhc-ChhHHHHHHHHHhhCC
Q 041183 222 LYVRCGQKLDAVKMFDEITEPDVVSWSERIAAAC-DGVEAFGLFKDLRFND 271 (760)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~-~~~~a~~~~~~m~~~~ 271 (760)
.+...|++++|..+.+...-||..+|-++-..-. -...+...+..+..+|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALCEYRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHHHHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 4567899999999999999999999988776666 4444444555666555
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=78.51 E-value=4.2 Score=37.43 Aligned_cols=56 Identities=20% Similarity=0.164 Sum_probs=35.0
Q ss_pred HhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 041183 624 LLGRVGLLEGAKMTIDQM-P-IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPD 679 (760)
Q Consensus 624 ~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 679 (760)
.+.+.|++++|++.+..- + .+-|...-..|+..+|-.|++++|..-++.+.+++|+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 345666666666665544 2 3445555566666667777777777777777777763
No 270
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.35 E-value=14 Score=43.05 Aligned_cols=81 Identities=17% Similarity=0.005 Sum_probs=39.2
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC----C-CCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHH
Q 041183 617 HYACIVDLLGRVGLLEGAKMTIDQM----P-IPPDA--HIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSN 689 (760)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~~~~~----~-~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 689 (760)
-|..++..+.+.|.++.+.++-+.+ . ..++. ..|..+...+...|++++|...+-..-... --...+..|+.
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~-~r~~cLr~LV~ 979 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP-LKKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS-SCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH-HHHHHHHHHHH
Confidence 3455555555666665555444332 1 11111 135555566666666666655554433221 13445555555
Q ss_pred HHHhcCChh
Q 041183 690 LYASAGMWN 698 (760)
Q Consensus 690 ~~~~~g~~~ 698 (760)
..+..|..+
T Consensus 980 ~lce~~~~~ 988 (1139)
T 4fhn_B 980 QLTKQGKIN 988 (1139)
T ss_dssp HHHHHCCHH
T ss_pred HHHhCCChh
Confidence 555555443
No 271
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=77.64 E-value=53 Score=33.08 Aligned_cols=150 Identities=11% Similarity=-0.015 Sum_probs=84.2
Q ss_pred hhHHHHhhccCChhHHHHhhhcCCCCCcc--hHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCc---ccHHHHHHHhcC
Q 041183 19 TTLISHFTKFADFRRAFRFLFDTQNRDII--TYNALISGLARFCQSGPALKLFDRLRYQGLRPDA---FTFSSLVKACGS 93 (760)
Q Consensus 19 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~ 93 (760)
.+.+..-+..|+.+-+..+++.-..++.. ...+.+...++.|+.+-+. .+.+.|..++. ...+.|..+ ++
T Consensus 15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A-~~ 89 (437)
T 1n11_A 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAK----YLLQNKAKVNAKAKDDQTPLHCA-AR 89 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHH----HHHHHTCCSSCCCTTSCCHHHHH-HH
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCCCCCCCCCCCHHHHH-HH
Confidence 45667777889988888888765544432 2234455556667655443 44444544433 223333333 33
Q ss_pred CCchhHHHHHHHHhcCCCCchh--hhHHHHHHHhcCChhhHHHHhhhcCCC---CceeHHHHHHHHHhcCChhHHHHHHH
Q 041183 94 LQENEIVHGVCLKLGFSSRVYL--VSGFIENYAKSGEIVSAEMCFRDCLDL---DNVAYTAMVCGYVWNGEFDKSKEVFV 168 (760)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~ 168 (760)
.|.. ++.+.+.+.|..++... ..+.+...++.|+.+.+..+++.-... +...++ .+...+..|+.+ +++
T Consensus 90 ~g~~-~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t-~L~~A~~~g~~~----~v~ 163 (437)
T 1n11_A 90 IGHT-NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFT-PLHVAAKYGKVR----VAE 163 (437)
T ss_dssp HTCH-HHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHH----HHH
T ss_pred CCCH-HHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCC-HHHHHHHcCCHH----HHH
Confidence 4443 56677777787665322 233455667788988888888765432 222223 344456677765 444
Q ss_pred HHHHCCCCCCh
Q 041183 169 EMRSLGLELNE 179 (760)
Q Consensus 169 ~m~~~g~~p~~ 179 (760)
.+.+.|..++.
T Consensus 164 ~Ll~~g~~~~~ 174 (437)
T 1n11_A 164 LLLERDAHPNA 174 (437)
T ss_dssp HHHHTTCCTTC
T ss_pred HHHhCCCCCCC
Confidence 45556655543
No 272
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=76.09 E-value=14 Score=36.47 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=7.4
Q ss_pred HhcCCHHHHHHHhcc
Q 041183 224 VRCGQKLDAVKMFDE 238 (760)
Q Consensus 224 ~~~g~~~~A~~~~~~ 238 (760)
++.|+.+-+.-+++.
T Consensus 252 ~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 252 VRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTCCHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHc
Confidence 344555555555443
No 273
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.99 E-value=29 Score=35.11 Aligned_cols=93 Identities=11% Similarity=-0.027 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC------CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHH--H
Q 041183 515 VESAVIDMYCKCGTIEDAKRAFRKIC------RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSK---FGVKPDEITY--L 583 (760)
Q Consensus 515 ~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~--~ 583 (760)
+...+.+.|.+.|+++.|.+.|.++. ..-+..+-..+..+...+++..+...++++.. .+-.|+.... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45566666777777777777666653 11223455556666666666666666665543 2222222110 1
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhh
Q 041183 584 AVLTSCCHAGLVREARTYLSCMSD 607 (760)
Q Consensus 584 ~l~~~~~~~g~~~~A~~~~~~~~~ 607 (760)
.-...+...+++..|-..|-++..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111123445566666655555544
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.66 E-value=19 Score=36.39 Aligned_cols=58 Identities=7% Similarity=0.033 Sum_probs=27.0
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 041183 618 YACIVDLLGRVGLLEGAKMTIDQMP-----IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLE 675 (760)
Q Consensus 618 ~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 675 (760)
...++..|.+.|++++|.+.+.++. ...-...+...+..+...+|+..+...++++..
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444444445555555554444441 122233444445555555555555555555544
No 275
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=69.08 E-value=54 Score=31.55 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=33.5
Q ss_pred hhHHHHhhccCChhHHHHhhhcCCCCCcch---HHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCc
Q 041183 19 TTLISHFTKFADFRRAFRFLFDTQNRDIIT---YNALISGLARFCQSGPALKLFDRLRYQGLRPDA 81 (760)
Q Consensus 19 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 81 (760)
++++..-++.|+++-+..+++.-..++... -.+-|...++.|+.+ +.+.+.+.|..|+.
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~----iv~~Ll~~ga~~~~ 87 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVL 87 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTC
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHH----HHHHHHHcCCchhh
Confidence 455666678888888888887655444321 112334445556543 44555566655543
No 276
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=66.22 E-value=25 Score=28.25 Aligned_cols=59 Identities=10% Similarity=0.189 Sum_probs=41.0
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 041183 361 ALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLIT 420 (760)
Q Consensus 361 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 420 (760)
..+-++.+....+.|++......+++|-+.+++..|.++++-++..- .+...+|..+++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 44555666666788888888888888888888888888888776542 223445655543
No 277
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=66.16 E-value=82 Score=28.99 Aligned_cols=46 Identities=9% Similarity=-0.020 Sum_probs=22.0
Q ss_pred CcchHHHHHHHHHHHHcCCCCchh--HhHHHHhhhcCCChHHHHHHHh
Q 041183 290 RILRAGKQIQAFCYKVGFMEVVSI--GNALISMYGKCGQVNDARSIFD 335 (760)
Q Consensus 290 ~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~ 335 (760)
+.......+.+.+.+.|..++... -...+...++.|+.+-+..+++
T Consensus 193 ~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 193 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp SCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 333344555666666665544321 1233334445555555555554
No 278
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=64.63 E-value=1.2e+02 Score=30.37 Aligned_cols=110 Identities=9% Similarity=0.005 Sum_probs=57.4
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCCCCcc---cHHHHHHHhcCCCchhHHHHHHHHhcCCCCch--hhhHHHHHHHhc
Q 041183 52 LISGLARFCQSGPALKLFDRLRYQGLRPDAF---TFSSLVKACGSLQENEIVHGVCLKLGFSSRVY--LVSGFIENYAKS 126 (760)
Q Consensus 52 ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~ 126 (760)
.+...+..|+.+ +++.+.+.|..|+.. ..+.|. ..+..|.. ++.+.+.+.|..++.. ...+.+...+..
T Consensus 17 ~L~~Aa~~g~~~----~v~~Ll~~g~~~~~~~~~~~t~L~-~A~~~g~~-~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 90 (437)
T 1n11_A 17 PLHVASFMGHLP----IVKNLLQRGASPNVSNVKVETPLH-MAARAGHT-EVAKYLLQNKAKVNAKAKDDQTPLHCAARI 90 (437)
T ss_dssp HHHHHHHHTCHH----HHHHHHHTTCCSCCSSSCCCCHHH-HHHHHTCH-HHHHHHHHHTCCSSCCCTTSCCHHHHHHHH
T ss_pred HHHHHHHCCCHH----HHHHHHHcCCCCCCCCCCCCCHHH-HHHHcCCH-HHHHHHHhCCCCCCCCCCCCCCHHHHHHHC
Confidence 344455566654 344444556655543 222333 33344443 4566666777665432 223445556677
Q ss_pred CChhhHHHHhhhcCCCC---ceeHHHHHHHHHhcCChhHHHHHHH
Q 041183 127 GEIVSAEMCFRDCLDLD---NVAYTAMVCGYVWNGEFDKSKEVFV 168 (760)
Q Consensus 127 g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~ 168 (760)
|+.+-+.-+++.-..++ ...++ .+...++.|+.+-+..+++
T Consensus 91 g~~~~v~~Ll~~ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~ 134 (437)
T 1n11_A 91 GHTNMVKLLLENNANPNLATTAGHT-PLHIAAREGHVETVLALLE 134 (437)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHh
Confidence 88887777777654432 22233 3344556677665554443
No 279
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=64.30 E-value=35 Score=33.16 Aligned_cols=67 Identities=13% Similarity=0.230 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChH---hHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHH
Q 041183 516 ESAVIDMYCKCGTIEDAKRAFRKICRDSLA---GWNAMMMGYAQHGC--YHEVSNLFNKMSKFGVKPDEITY 582 (760)
Q Consensus 516 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~ 582 (760)
...++.-|...++.++|.+.++++..|... ....+..++-+.++ .+...+++..+...|+-+.....
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~ 291 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 291 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 356788899999999999999999877432 34444555554333 35677888888887765544433
No 280
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=63.74 E-value=33 Score=30.81 Aligned_cols=166 Identities=10% Similarity=0.032 Sum_probs=88.4
Q ss_pred chhhHHhhcCCCCch--hhhhHHHHhhccCChhHHHHhhhcCCCCCcch---HHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 041183 2 IYSLLIKNGHHLDPI--LSTTLISHFTKFADFRRAFRFLFDTQNRDIIT---YNALISGLARFCQSGPALKLFDRLRYQG 76 (760)
Q Consensus 2 ~~~~~~~~g~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 76 (760)
++..+.+.|..++.. .-.+.+...++.|+++-+.-+++.-..++... -.+.+...++.|+.+ +++.+.+.|
T Consensus 24 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~----~v~~Ll~~g 99 (240)
T 3eu9_A 24 RCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLS----MVVQLMKYG 99 (240)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHH----HHHHHHHTT
T ss_pred HHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHH----HHHHHHHcC
Confidence 456788888776554 33457778888999888877777655332211 223444455556543 455556666
Q ss_pred CCCCcc---cHHHHHHHhcCCCchhHHHHHHHHhcCCCCch---hhhHHHHHHHhcCC-hhhHHHHhhhcCCCCce---e
Q 041183 77 LRPDAF---TFSSLVKACGSLQENEIVHGVCLKLGFSSRVY---LVSGFIENYAKSGE-IVSAEMCFRDCLDLDNV---A 146 (760)
Q Consensus 77 ~~p~~~---~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~---~ 146 (760)
..|+.. ..+.+..++ ..+.. ++.+.+.+.|..++.. -.+.+..+ +..+. .+-..-+.+.-...+.. .
T Consensus 100 ~~~~~~~~~g~t~l~~A~-~~~~~-~~~~~Ll~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~~L~~~~~~~~~~~~~~ 176 (240)
T 3eu9_A 100 ADPSLIDGEGCSCIHLAA-QFGHT-SIVAYLIAKGQDVDMMDQNGMTPLMWA-AYRTHSVDPTRLLLTFNVSVNLGDKYH 176 (240)
T ss_dssp CCTTCCCTTSCCHHHHHH-HTTCH-HHHHHHHHTTCCTTCCCTTSCCHHHHH-HHHCCSSTTHHHHHHTTCCTTCCCTTT
T ss_pred CCCcccCCCCCCHHHHHH-HcCHH-HHHHHHHhcCCCccccCCCCCcHHHHH-HHhCChHHHHHHHHhcCCCcchhhccC
Confidence 665543 334444443 33443 5777777888766532 33444443 43444 44444444433332221 1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 041183 147 YTAMVCGYVWNGEFDKSKEVFVEMRSLGLELN 178 (760)
Q Consensus 147 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 178 (760)
-.+.+...+..|+.+-+.- +.+.|..++
T Consensus 177 g~t~L~~A~~~~~~~~v~~----Ll~~g~~~~ 204 (240)
T 3eu9_A 177 KNTALHWAVLAGNTTVISL----LLEAGANVD 204 (240)
T ss_dssp CCCHHHHHHHHTCHHHHHH----HHHHTCCTT
T ss_pred CCcHHHHHHHcCCHHHHHH----HHHcCCCCC
Confidence 1234555667777654443 344465554
No 281
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=62.84 E-value=51 Score=29.43 Aligned_cols=147 Identities=13% Similarity=0.047 Sum_probs=80.7
Q ss_pred HHHhhccCChhHHHHhhhcCCCCCcc--hHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCcc----cHHHHHHHhcCCC
Q 041183 22 ISHFTKFADFRRAFRFLFDTQNRDII--TYNALISGLARFCQSGPALKLFDRLRYQGLRPDAF----TFSSLVKACGSLQ 95 (760)
Q Consensus 22 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~ 95 (760)
+...++.|+++-...+++.-..++.. .-.+.+...++.|+.+ +++.+.+.|..++.. ..+.+..+ +..+
T Consensus 13 l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~t~L~~A-~~~~ 87 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRID----LVKYYISKGAIVDQLGGDLNSTPLHWA-TRQG 87 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTTBCHHHHH-HHHT
T ss_pred HHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHH----HHHHHHHcCCcchhhcCCcCCChhHHH-HHcC
Confidence 44456789998888888765433222 1223555666677654 455555566544432 22333333 3334
Q ss_pred chhHHHHHHHHhcCCCCch--hhhHHHHHHHhcCChhhHHHHhhhcCCC---CceeHHHHHHHHHhcCChhHHHHHHHHH
Q 041183 96 ENEIVHGVCLKLGFSSRVY--LVSGFIENYAKSGEIVSAEMCFRDCLDL---DNVAYTAMVCGYVWNGEFDKSKEVFVEM 170 (760)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m 170 (760)
+. ++.+.+.+.|..++.. .....+...+..|+.+-+..+++.-..+ +....+.+..+..+ |+.....++ +
T Consensus 88 ~~-~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~~---L 162 (240)
T 3eu9_A 88 HL-SMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYR-THSVDPTRL---L 162 (240)
T ss_dssp CH-HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-CCSSTTHHH---H
T ss_pred CH-HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHh-CChHHHHHH---H
Confidence 43 5667777888776643 2234455667789988888887765443 33344455444433 443333333 3
Q ss_pred HHCCCCCC
Q 041183 171 RSLGLELN 178 (760)
Q Consensus 171 ~~~g~~p~ 178 (760)
.+.|..++
T Consensus 163 ~~~~~~~~ 170 (240)
T 3eu9_A 163 LTFNVSVN 170 (240)
T ss_dssp HHTTCCTT
T ss_pred HhcCCCcc
Confidence 44554443
No 282
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=62.70 E-value=79 Score=27.65 Aligned_cols=153 Identities=18% Similarity=0.020 Sum_probs=74.0
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 041183 512 DIFVESAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCH 591 (760)
Q Consensus 512 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 591 (760)
+..+-...+..+.+.+..+....+.+.+..++...-...+.++.+.+..+ +...+.++.. .|+...-...+.++.+
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~ 107 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQ 107 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 33333334444444444333333344444455544444555555555432 2333333332 3555555555566666
Q ss_pred cCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 041183 592 AGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGS 671 (760)
Q Consensus 592 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 671 (760)
.|+.+ +...+..+.. .++..+-...+.++.+.|..+ +...+..+-..++...-...+.++...++ +.+...+.
T Consensus 108 ~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~ 180 (211)
T 3ltm_A 108 IGDER-AVEPLIKALK----DEDWFVRIAAAFALGEIGDER-AVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAME 180 (211)
T ss_dssp HCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHH
T ss_pred hCcHH-HHHHHHHHHh----CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHH
Confidence 55533 3333333332 355555556666666666543 33333333235666666666666666665 44555555
Q ss_pred HHhc
Q 041183 672 KLLE 675 (760)
Q Consensus 672 ~~~~ 675 (760)
++++
T Consensus 181 ~~l~ 184 (211)
T 3ltm_A 181 KLAE 184 (211)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
No 283
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=62.46 E-value=1.1e+02 Score=29.24 Aligned_cols=104 Identities=10% Similarity=0.012 Sum_probs=51.0
Q ss_pred HHHHHHHHHHcCCCCchh--HhHHHHhhhcCCChHHHHHHHhcC-C---CCCeeeHHHHHHHHHhcCCccHHHHHHHHHH
Q 041183 296 KQIQAFCYKVGFMEVVSI--GNALISMYGKCGQVNDARSIFDYL-I---FKDSVSWNSMIAGYSENGFFNQALDMFCHML 369 (760)
Q Consensus 296 ~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~-~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 369 (760)
..+.+.+++.|..++... -.+.+...+..|..+.+..+++.- . ..|..-++.|.. .+..|+. ++.+.+.
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~-A~~~g~~----~iv~~Ll 293 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL-AVELKLK----KIAELLC 293 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHH-HHHTTCH----HHHHHHH
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHH-HHHcCCH----HHHHHHH
Confidence 345555667776554322 223445556777777777776542 1 112222333332 3344553 3444555
Q ss_pred HCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCC
Q 041183 370 EFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLD 411 (760)
Q Consensus 370 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 411 (760)
+.|..+|..+ .+...++.|+.+ +.+.+++.|-.||
T Consensus 294 ~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 294 KRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKED 328 (337)
T ss_dssp TTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC-
T ss_pred HCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCC
Confidence 6676666554 223333445543 3444555665544
No 284
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.10 E-value=32 Score=35.24 Aligned_cols=65 Identities=14% Similarity=0.024 Sum_probs=40.2
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhCCCCCC----H--HHH-HHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 041183 616 EHYACIVDLLGRVGLLEGAKMTIDQMPIPPD----A--HIW-QSLLSACTIYGNIDLGLLAGSKLLELQPDN 680 (760)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~--~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 680 (760)
..++.++..|...+.++.|..++.+...+.. . ..| .-++..+.-.+++.+|.+.+..++..-|.+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 4566677777777777777777777642211 1 122 223444566777777777777777766543
No 285
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=61.12 E-value=79 Score=27.57 Aligned_cols=67 Identities=4% Similarity=-0.185 Sum_probs=43.1
Q ss_pred CCCChhHHHHHHHHhhh--cCChHHHHHHHHhC---C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 041183 611 LIPQLEHYACIVDLLGR--VGLLEGAKMTIDQM---P-IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQ 677 (760)
Q Consensus 611 ~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~---~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 677 (760)
..-|+......+..--. .+...++.++|..| + -.--...|......+...|++++|.++|+..++..
T Consensus 73 YkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 73 YRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp GTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44555444333332222 44466777777766 2 34456677777888888888888888888888854
No 286
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=60.88 E-value=15 Score=35.02 Aligned_cols=57 Identities=18% Similarity=0.040 Sum_probs=35.6
Q ss_pred hhhHHHHhhccCChhHHHHhhhcCCCCCcc--hHHHHHHHHHhcCCcc--hHHHHHHHHHh
Q 041183 18 STTLISHFTKFADFRRAFRFLFDTQNRDII--TYNALISGLARFCQSG--PALKLFDRLRY 74 (760)
Q Consensus 18 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~--~A~~~~~~m~~ 74 (760)
...++.-|-..|+.++|...++++..|.-. .-..+|......++.+ .+-.++..+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 457889999999999999999999877622 1122333233333222 25556666653
No 287
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=60.75 E-value=73 Score=29.75 Aligned_cols=63 Identities=8% Similarity=0.099 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCCCchh--hhHHHHHHHhcCChhhHHHHhhhcCC---CCceeHHHHHHHHHhcCChh
Q 041183 99 IVHGVCLKLGFSSRVYL--VSGFIENYAKSGEIVSAEMCFRDCLD---LDNVAYTAMVCGYVWNGEFD 161 (760)
Q Consensus 99 ~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 161 (760)
++.+.+.+.|..++... -.+.+...+..|+.+-+..+++.-.. .+...|.+.+...+..|+.+
T Consensus 76 ~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~ 143 (285)
T 3kea_A 76 KIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS 143 (285)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHH
T ss_pred HHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHH
Confidence 34455555565544321 12233444556666666666654333 22223334444455555543
No 288
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=58.53 E-value=1.9e+02 Score=30.69 Aligned_cols=363 Identities=9% Similarity=-0.057 Sum_probs=173.3
Q ss_pred hHHHHhhhcCCChHHHHHHHhcCCCCCeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHH
Q 041183 315 NALISMYGKCGQVNDARSIFDYLIFKDSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLK 394 (760)
Q Consensus 315 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 394 (760)
+.-+..+.+.+++......+.. +..+...-.....+....|+..+|......+-..| ...+..+..++..+.+.|.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCC
Confidence 3444556667777777776665 33344444556666667777666666665554443 223344555555555433221
Q ss_pred H--HHHHHHHHHHhC-----------CCCChh-HHHHHHHHHHhcCChHHHHHHHhhcCCCCccc---HHHHHHHHHhcC
Q 041183 395 Q--AMQVHSHIIKSG-----------FLLDDS-MISCLITTYGKCNALNESKRVLSEIDKKNAVH---INALASVLVYAS 457 (760)
Q Consensus 395 ~--a~~~~~~~~~~~-----------~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~ 457 (760)
. ...=+..+...| +.++.. ....++..+. +...+....... .++... +..-+.-+.+ .
T Consensus 154 ~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~ 228 (618)
T 1qsa_A 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTT-GATDFTRQMAAVAFASVAR-Q 228 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhcc-CCChhhHHHHHHHHHHHHh-c
Confidence 1 111111111111 111111 1112222111 122222222221 111111 1111222333 3
Q ss_pred ChhHHHHHHHHHHhCCCCCChhH----HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHH
Q 041183 458 CHAEALELYRTIWGSCREVNGST----FSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAK 533 (760)
Q Consensus 458 ~~~~A~~~~~~m~~~~~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 533 (760)
+.+.|...|....... ..+... ...+.......+....+...+...... ..+.......+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 6788888888876543 223322 222333344455355555666554432 234444455555566789999999
Q ss_pred HHHHhcCCCChH---hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcC
Q 041183 534 RAFRKICRDSLA---GWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHG 610 (760)
Q Consensus 534 ~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (760)
..|..|...... ..-=+..++...|+.++|..+|..+... . +|..++ +..+.|..-.. .. ..
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~l-Aa~~Lg~~~~~-------~~-~~ 370 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMV-AAQRIGEEYEL-------KI-DK 370 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHH-HHHHTTCCCCC-------CC-CC
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHH-HHHHcCCCCCC-------CC-CC
Confidence 999988753221 1222445667789999999999988752 1 233322 22222321000 00 00
Q ss_pred CCCC-hh-----HHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC---CCc
Q 041183 611 LIPQ-LE-----HYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQP---DNE 681 (760)
Q Consensus 611 ~~~~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~~~ 681 (760)
..+. .. .-..-+..+...|....|...+..+....+......+.......|..+.++....+....+. .-|
T Consensus 371 ~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P 450 (618)
T 1qsa_A 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFP 450 (618)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSC
T ss_pred CChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCC
Confidence 1110 00 11223455677888888887776653233444444555555677777777766654433220 012
Q ss_pred hhHHHHHHHHHhcCChhHHHH
Q 041183 682 STYVLLSNLYASAGMWNDVGK 702 (760)
Q Consensus 682 ~~~~~l~~~~~~~g~~~~A~~ 702 (760)
..|...+.-+.+.-..+.++-
T Consensus 451 ~~y~~~i~~~a~~~gv~~~ll 471 (618)
T 1qsa_A 451 LAYNDLFKRYTSGKEIPQSYA 471 (618)
T ss_dssp CTTHHHHHHHHTTSSSCHHHH
T ss_pred cchHHHHHHHHHHcCCCHHHH
Confidence 234445555555544554443
No 289
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=57.59 E-value=36 Score=30.17 Aligned_cols=165 Identities=13% Similarity=0.030 Sum_probs=90.9
Q ss_pred chhhHHhhcCCCCch---hhhhHHHHhhccCChhHHHHhhhcCCCCCcc---hHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 041183 2 IYSLLIKNGHHLDPI---LSTTLISHFTKFADFRRAFRFLFDTQNRDII---TYNALISGLARFCQSGPALKLFDRLRYQ 75 (760)
Q Consensus 2 ~~~~~~~~g~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 75 (760)
+...+.+.|..++.. .-.+.+...++.|+.+-+..+++.-..++.. .++ .+...+..|+.+- ++.+.+.
T Consensus 6 ~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~----v~~Ll~~ 80 (223)
T 2f8y_A 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT-PLHAAVSADAQGV----FQILIRN 80 (223)
T ss_dssp CEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHH----HHHHHHB
T ss_pred HHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC-HHHHHHHcCCHHH----HHHHHHc
Confidence 456677788666532 3456677778899988887777765444322 233 4444456666543 3444444
Q ss_pred CC-CC---CcccHHHHHHHhcCCCchhHHHHHHHHhcCCCCchh--hhHHHHHHHhcCChhhHHHHhhhcCCCC---cee
Q 041183 76 GL-RP---DAFTFSSLVKACGSLQENEIVHGVCLKLGFSSRVYL--VSGFIENYAKSGEIVSAEMCFRDCLDLD---NVA 146 (760)
Q Consensus 76 ~~-~p---~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~ 146 (760)
+. .+ +....+.+..++ ..+.. ++.+.+.+.|..++... -.+.+...+..|+.+-+..+++.-..++ ..-
T Consensus 81 ~~~~~~~~~~~g~t~L~~A~-~~~~~-~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 158 (223)
T 2f8y_A 81 RATDLDARMHDGTTPLILAA-RLAVE-GMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 158 (223)
T ss_dssp TTSCTTCCCTTCCCHHHHHH-HHTCH-HHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred CCCCcccCCCCCCcHHHHHH-HhCcH-HHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence 32 22 222333443333 23332 56777777887765432 2345555667888888888877644432 222
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 041183 147 YTAMVCGYVWNGEFDKSKEVFVEMRSLGLELN 178 (760)
Q Consensus 147 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 178 (760)
.+. +...++.|+.+ +++.+.+.|..++
T Consensus 159 ~t~-L~~A~~~~~~~----~v~~Ll~~ga~~~ 185 (223)
T 2f8y_A 159 ETP-LFLAAREGSYE----TAKVLLDHFANRD 185 (223)
T ss_dssp CCH-HHHHHHHTCHH----HHHHHHHTTCCTT
T ss_pred cCH-HHHHHHcCCHH----HHHHHHHcCCCCc
Confidence 333 33445566654 4444555665554
No 290
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=57.14 E-value=15 Score=34.55 Aligned_cols=161 Identities=11% Similarity=0.035 Sum_probs=94.5
Q ss_pred hHHhhcCCCCchhhhhHHHHhhccCChhHHHHhhhcCCCCCcchHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCcc--
Q 041183 5 LLIKNGHHLDPILSTTLISHFTKFADFRRAFRFLFDTQNRDIITYNALISGLARFCQSGPALKLFDRLRYQGLRPDAF-- 82 (760)
Q Consensus 5 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-- 82 (760)
.+.+.++......-.+.+...+..|+.+-+..+++.-..++...-.+.+...+..|+.+- .+.+.+.|..++..
T Consensus 18 lL~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~ga~~~~~d~ 93 (285)
T 3kea_A 18 FLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKI----VKILLFSGLDDSQFDD 93 (285)
T ss_dssp HHHSTTTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHH----HHHHHHTTCCTTCCCT
T ss_pred HHHhCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHHCCCCCCCcCC
Confidence 344444332223344567777778998888777776444333323445556666777554 44445566655443
Q ss_pred -cHHHHHHHhcCCCchhHHHHHHHHhcCCCCchhh---hHHHHHHHhcCChhhHHHHhhhcCCC-CceeHHHHHHHHHhc
Q 041183 83 -TFSSLVKACGSLQENEIVHGVCLKLGFSSRVYLV---SGFIENYAKSGEIVSAEMCFRDCLDL-DNVAYTAMVCGYVWN 157 (760)
Q Consensus 83 -~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~ 157 (760)
-.+.|..++ ..|.. ++.+.+.+.|..++.... .+.+...+..|+.+-+..+++..... +...-.+.+...+..
T Consensus 94 ~g~t~L~~A~-~~g~~-~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~ 171 (285)
T 3kea_A 94 KGNTALYYAV-DSGNM-QTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKN 171 (285)
T ss_dssp TSCCHHHHHH-HTTCH-HHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHT
T ss_pred CCCcHHHHHH-HcCCH-HHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHc
Confidence 334444443 33433 566777777876664332 45666677889988888888776553 222344556666778
Q ss_pred CChhHHHHHHHHHH
Q 041183 158 GEFDKSKEVFVEMR 171 (760)
Q Consensus 158 g~~~~A~~~~~~m~ 171 (760)
|+.+-+.-+++.-.
T Consensus 172 g~~~~v~~Ll~~ga 185 (285)
T 3kea_A 172 GHVDMMILLLDYMT 185 (285)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHcCC
Confidence 88876666666543
No 291
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=56.91 E-value=80 Score=27.54 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC
Q 041183 546 GWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPD-EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIP 613 (760)
Q Consensus 546 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 613 (760)
.|-..+..+ ..+...++..+|..|..+|+--. ...|......+...|++.+|.++|+.-.+ .+-.|
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~-~~A~P 148 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE-NNCRP 148 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBS
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCcc
Confidence 344444443 23446677888888888776554 35566667777788888888888888777 55555
No 292
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=55.54 E-value=25 Score=28.29 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=44.1
Q ss_pred hhhhHHHHhhccCChhHHHHhhhcCCCCCc---chHHHHHHHHHhcCC--cchHHHHHHHHHhCCCC
Q 041183 17 LSTTLISHFTKFADFRRAFRFLFDTQNRDI---ITYNALISGLARFCQ--SGPALKLFDRLRYQGLR 78 (760)
Q Consensus 17 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~~~--~~~A~~~~~~m~~~~~~ 78 (760)
....++.-|...|+.++|.+.++++..|.- ..+..+..++-+.++ .+.+..++..+...|+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 346789999999999999999999987732 233445555555432 35678888888876643
No 293
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=53.04 E-value=54 Score=30.11 Aligned_cols=37 Identities=14% Similarity=0.020 Sum_probs=16.4
Q ss_pred hhHHhhcCCCCch--hhhhHHHHhhccCChhHHHHhhhc
Q 041183 4 SLLIKNGHHLDPI--LSTTLISHFTKFADFRRAFRFLFD 40 (760)
Q Consensus 4 ~~~~~~g~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~ 40 (760)
..+.+.|..++.. .-.+.+...+..|+.+-+..+++.
T Consensus 20 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 58 (261)
T 2xai_A 20 RNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH 58 (261)
T ss_dssp HHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 3445555444432 122344444455555554444443
No 294
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=50.35 E-value=1.2e+02 Score=26.07 Aligned_cols=154 Identities=18% Similarity=0.022 Sum_probs=77.4
Q ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 041183 511 QDIFVESAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCC 590 (760)
Q Consensus 511 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 590 (760)
++..+-...+..+...+..+....+.+.+..++...-...+.++...+..+ +...+.++.. .|+...-...+.++.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALG 101 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 334444444444444444333344444444555555555555555555442 3333333333 356555555666666
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 041183 591 HAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAG 670 (760)
Q Consensus 591 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~ 670 (760)
+.|+.+ +...+..+.. .++..+-...+.++.+.|+.+ +...+..+-..++...-...+.++...|+ +.+...+
T Consensus 102 ~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L 174 (201)
T 3ltj_A 102 QIGDER-AVEPLIKALK----DEDWFVRIAAAFALGEIGDER-AVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAM 174 (201)
T ss_dssp HHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHH
T ss_pred HhCcHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHH
Confidence 666543 3333333332 345555566666676666643 33333333235666666666666666665 3455555
Q ss_pred HHHhc
Q 041183 671 SKLLE 675 (760)
Q Consensus 671 ~~~~~ 675 (760)
..++.
T Consensus 175 ~~~l~ 179 (201)
T 3ltj_A 175 EKLAE 179 (201)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55553
No 295
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=49.89 E-value=80 Score=25.25 Aligned_cols=64 Identities=14% Similarity=0.264 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChH---hHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCH
Q 041183 516 ESAVIDMYCKCGTIEDAKRAFRKICRDSLA---GWNAMMMGYAQHGC--YHEVSNLFNKMSKFGVKPDE 579 (760)
Q Consensus 516 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~p~~ 579 (760)
...+++-|...|+.++|.+.++++..|... ....+..++-+.+. .+.+..++..+.+.|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 356778888888888888888888766332 23444445544432 35677777777776655443
No 296
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=49.12 E-value=1.1e+02 Score=28.98 Aligned_cols=60 Identities=10% Similarity=0.067 Sum_probs=43.3
Q ss_pred HHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 637 TIDQMPIPPDA--HIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 637 ~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
+|...+..|.. .++.+.+....+.+++..|..+.++++++.|.. ...++|++++..-.+.
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~--------------~~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG--------------PRAEQARKIKNKADSM 256 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS--------------HHHHHHHHHHHHHHTS
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH--------------HHHHHHHHHHHHHhcC
Confidence 34444455543 356777888999999999999999999999842 2345677777776553
No 297
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=48.44 E-value=2.1e+02 Score=28.21 Aligned_cols=124 Identities=12% Similarity=0.076 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhcCCC--------CcccHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCChhHH--
Q 041183 413 SMISCLITTYGKCNALNESKRVLSEIDKK--------NAVHINALASVLVYAS-CHAEALELYRTIWGSCREVNGSTF-- 481 (760)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~~~~~~~~~~-- 481 (760)
.....|...|.+.|+.++..+++.....- .......++..+.... ..+.-.++..+..+..- -...+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 45567888899999999988888877541 1222334444444322 22233333333322110 011222
Q ss_pred ----HHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-----chHHHHHHHHHHhcCCHHHHHHHHH
Q 041183 482 ----SIVLKACAAMTDLEQGKAIHCLALKARYDQD-----IFVESAVIDMYCKCGTIEDAKRAFR 537 (760)
Q Consensus 482 ----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~ 537 (760)
..+...+...|++.+|.+++..+.+.--..| ..++..-++.|...+++.++...+.
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~ 163 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALT 163 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 1344555555566665555555554211111 1223333444555555555555553
No 298
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=46.71 E-value=24 Score=29.40 Aligned_cols=61 Identities=16% Similarity=0.152 Sum_probs=43.3
Q ss_pred hhhhHHHHhhccCChhHHHHhhhcCCCCCc---chHHHHHHHHHhcCC--cchHHHHHHHHHhCCC
Q 041183 17 LSTTLISHFTKFADFRRAFRFLFDTQNRDI---ITYNALISGLARFCQ--SGPALKLFDRLRYQGL 77 (760)
Q Consensus 17 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~~~--~~~A~~~~~~m~~~~~ 77 (760)
..+.++.-|...|+.++|.+.++++..|.- .++..+..++-+.++ .+.+..++..+...|+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 356789999999999999999999987732 234445555555322 3457788888887654
No 299
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=46.21 E-value=76 Score=28.32 Aligned_cols=165 Identities=14% Similarity=0.066 Sum_probs=90.9
Q ss_pred chhhHHhhcCCCCch--hhhhHHHHhhccCChhHHHHhhhcCCCC---CcchHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 041183 2 IYSLLIKNGHHLDPI--LSTTLISHFTKFADFRRAFRFLFDTQNR---DIITYNALISGLARFCQSGPALKLFDRLRYQG 76 (760)
Q Consensus 2 ~~~~~~~~g~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 76 (760)
+...+.+.|..++.. .-.+.+...+..|+.+-+.-+++.-..+ +....+ .+...+..|+. ++++.+.+.|
T Consensus 26 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~----~~~~~Ll~~~ 100 (237)
T 3b7b_A 26 ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGST-CLHLAAKKGHY----EVVQYLLSNG 100 (237)
T ss_dssp HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCC-HHHHHHHTTCH----HHHHHHHTTT
T ss_pred HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCc-HHHHHHHcCCH----HHHHHHHhCC
Confidence 456778888777653 2235666777788888777777654333 222233 34444455554 4455555555
Q ss_pred -CCCC---cccHHHHHHHhcCCCchhHHHHHHHHhcCCCCch--hhhHHHHHHHhcCChhhHHHHhhhcCCCCce---eH
Q 041183 77 -LRPD---AFTFSSLVKACGSLQENEIVHGVCLKLGFSSRVY--LVSGFIENYAKSGEIVSAEMCFRDCLDLDNV---AY 147 (760)
Q Consensus 77 -~~p~---~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~ 147 (760)
..++ ..-.+.+..++ ..++. ++.+.+.+.|..++.. ...+.+...+..|+.+-+..+++.-..++.. -.
T Consensus 101 ~~~~~~~~~~g~t~L~~A~-~~~~~-~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~ 178 (237)
T 3b7b_A 101 QMDVNCQDDGGWTPMIWAT-EYKHV-DLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGD 178 (237)
T ss_dssp CCCTTCCCTTSCCHHHHHH-HTTCH-HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCC
T ss_pred CCCcccCCCCCCCHHHHHH-HcCCH-HHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCC
Confidence 3332 22233444333 33333 5677777888766543 2334455666778888888877765543322 22
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 041183 148 TAMVCGYVWNGEFDKSKEVFVEMRSLGLELN 178 (760)
Q Consensus 148 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 178 (760)
+ .+...++.|+.+-+ +.+.+.|..++
T Consensus 179 t-~L~~A~~~~~~~~v----~~Ll~~gad~~ 204 (237)
T 3b7b_A 179 S-PLHIAARENRYDCV----VLFLSRDSDVT 204 (237)
T ss_dssp C-HHHHHHHTTCHHHH----HHHHTTTCCTT
T ss_pred C-HHHHHHHhCCHhHH----HHHHHcCCCCC
Confidence 2 34445566765533 44445565544
No 300
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.33 E-value=69 Score=32.86 Aligned_cols=63 Identities=19% Similarity=0.108 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-------chhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 041183 647 AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDN-------ESTYVLLSNLYASAGMWNDVGKLRKEMKEKF 711 (760)
Q Consensus 647 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (760)
...++.+++.|...+.++.|..+..+.. .|.+ ...++.+|.++.-+++|.+|.+.+....++-
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 4568899999999999999999999986 4432 3456778999999999999999999876654
No 301
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=42.29 E-value=1.5e+02 Score=24.57 Aligned_cols=29 Identities=7% Similarity=0.125 Sum_probs=13.8
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041183 680 NESTYVLLSNLYASAGMWNDVGKLRKEMK 708 (760)
Q Consensus 680 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (760)
-+..|...+..+...|++++|.++++.=.
T Consensus 100 ~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 100 SSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444555555555555544433
No 302
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=42.10 E-value=1.6e+02 Score=25.09 Aligned_cols=16 Identities=13% Similarity=0.185 Sum_probs=8.6
Q ss_pred HhcCChhhHHHHhhhc
Q 041183 124 AKSGEIVSAEMCFRDC 139 (760)
Q Consensus 124 ~~~g~~~~A~~~~~~~ 139 (760)
+..|+.+....++..-
T Consensus 13 ~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 13 ANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHTTCHHHHHHHHTCT
T ss_pred HHhccHHHHHHHHHcC
Confidence 3455566555555443
No 303
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=42.04 E-value=70 Score=26.52 Aligned_cols=64 Identities=14% Similarity=0.264 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChH---hHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCH
Q 041183 516 ESAVIDMYCKCGTIEDAKRAFRKICRDSLA---GWNAMMMGYAQHGC--YHEVSNLFNKMSKFGVKPDE 579 (760)
Q Consensus 516 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~p~~ 579 (760)
...++.-|...|+.++|.+.++++..|... ....+..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 356778888888888888888888766322 33444445544322 35567777777776654443
No 304
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=41.45 E-value=66 Score=30.50 Aligned_cols=200 Identities=12% Similarity=0.071 Sum_probs=99.0
Q ss_pred HHHHHHhHhcCCHHHHHHHhccCCCCCcch--HHHHHHhhc-----ChhHHHHHHHHHhhCCccCCcch---HHHHHHhh
Q 041183 217 NAIMNLYVRCGQKLDAVKMFDEITEPDVVS--WSERIAAAC-----DGVEAFGLFKDLRFNDFQINEYT---MINLLSSV 286 (760)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~ll~~~~-----~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~~ 286 (760)
..++.-|...|+.++|...++++..|.... ...+|.... ..+-+..++..+.. ++-+.... |..++..+
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~l 85 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKDL 85 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhh
Confidence 678888999999999999999998765221 112222222 44455666676653 33332222 33333333
Q ss_pred cCCC-cchHHHHHHHHHHH----HcCCCCchhHhHHHHhhhcCCC--hHHHHHHHhc------C----CCCCe-------
Q 041183 287 GGER-ILRAGKQIQAFCYK----VGFMEVVSIGNALISMYGKCGQ--VNDARSIFDY------L----IFKDS------- 342 (760)
Q Consensus 287 ~~~~-~~~~a~~~~~~~~~----~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~------~----~~~~~------- 342 (760)
.... |...|..++..++. .++-|-.......-......|. ...|..++.. + ..++.
T Consensus 86 dDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~eel 165 (307)
T 2zu6_B 86 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHL 165 (307)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHHH
T ss_pred hHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHHH
Confidence 2211 34444444444433 3333322222211111000111 2233333310 0 00110
Q ss_pred -eeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCC--HHHHHHHHHHHHHhCCCCChhHHHHH
Q 041183 343 -VSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKS--LKQAMQVHSHIIKSGFLLDDSMISCL 418 (760)
Q Consensus 343 -~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 418 (760)
...+.++.-|...|+.++|.+.++++..-... .......+..++-+.++ .+...+++..+.+.|+-+.......+
T Consensus 166 kkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf 243 (307)
T 2zu6_B 166 VKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGY 243 (307)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 12456788888889999999988887521111 12233444455555432 45666777777777766554444433
No 305
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=40.83 E-value=90 Score=30.33 Aligned_cols=40 Identities=5% Similarity=-0.153 Sum_probs=18.6
Q ss_pred HHHHHHHHhcCCCCchhhhHHHHHHHhcCChhhHHHHhhh
Q 041183 99 IVHGVCLKLGFSSRVYLVSGFIENYAKSGEIVSAEMCFRD 138 (760)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 138 (760)
++.+.+.+.|..++...-.+.+...+..|+.+-+..+++.
T Consensus 67 ~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 106 (364)
T 3ljn_A 67 DTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEG 106 (364)
T ss_dssp HHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHh
Confidence 4445555555544442233333334445555555554443
No 306
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=40.20 E-value=1.8e+02 Score=24.99 Aligned_cols=17 Identities=12% Similarity=-0.035 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHHhccCc
Q 041183 578 DEITYLAVLTSCCHAGL 594 (760)
Q Consensus 578 ~~~~~~~l~~~~~~~g~ 594 (760)
+...-...+.++.+.|.
T Consensus 151 ~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 151 DGWVRQSAADALGEIGG 167 (201)
T ss_dssp SHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33333344444444443
No 307
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=39.37 E-value=1.9e+02 Score=25.06 Aligned_cols=9 Identities=11% Similarity=0.102 Sum_probs=3.4
Q ss_pred HHHHHhccC
Q 041183 585 VLTSCCHAG 593 (760)
Q Consensus 585 l~~~~~~~g 593 (760)
.+.++.+.+
T Consensus 163 a~~aL~~~~ 171 (211)
T 3ltm_A 163 AADALGEIG 171 (211)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 333333333
No 308
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=39.08 E-value=1.8e+02 Score=24.76 Aligned_cols=151 Identities=14% Similarity=0.088 Sum_probs=82.2
Q ss_pred HHHhhccCChhHHHHhhhcCC-C---CCcchHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCcc---cHHHHHHHhcCC
Q 041183 22 ISHFTKFADFRRAFRFLFDTQ-N---RDIITYNALISGLARFCQSGPALKLFDRLRYQGLRPDAF---TFSSLVKACGSL 94 (760)
Q Consensus 22 ~~~~~~~~~~~~a~~~~~~~~-~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~ 94 (760)
+...+..|+.+....++..-. . ++..-++. +...++.|+ .++++.+.+.|..|+.. ..+.+..+ +..
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~g~t~l~~A-~~~ 82 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTP-LNIAVHNND----IEIAKALIDRGADINLQNSISDSPYLYA-GAQ 82 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCH-HHHHHHHTC----HHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCH-HHHHHHcCC----HHHHHHHHHcCCCCCCCCCCCCCHHHHH-HHc
Confidence 445566889999988887654 2 23333333 444445565 34556666667666543 23344333 334
Q ss_pred CchhHHHHHHH-HhcCCCCchh--hhHHHHHHHhcCChhhHHHHhhhc-CC---CCceeHHHHHHHHHhcCChhHHHHHH
Q 041183 95 QENEIVHGVCL-KLGFSSRVYL--VSGFIENYAKSGEIVSAEMCFRDC-LD---LDNVAYTAMVCGYVWNGEFDKSKEVF 167 (760)
Q Consensus 95 ~~~~~~~~~~~-~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~-~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 167 (760)
+..+ +.+.+. ..+..++... -.+.+...+..|+.+-+..+++.. .. +|..-++.+..+.........-.+++
T Consensus 83 ~~~~-~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v 161 (201)
T 3hra_A 83 GRTE-ILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV 161 (201)
T ss_dssp TCHH-HHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred CCHH-HHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence 4444 444444 4444443221 123345566778888888887765 22 34444445544443332234446777
Q ss_pred HHHHHCCCCCCh
Q 041183 168 VEMRSLGLELNE 179 (760)
Q Consensus 168 ~~m~~~g~~p~~ 179 (760)
+.+.+.|..++.
T Consensus 162 ~~Ll~~ga~~~~ 173 (201)
T 3hra_A 162 KLLMENGADQSI 173 (201)
T ss_dssp HHHHHTTCCTTC
T ss_pred HHHHHCCCCCCc
Confidence 777778876654
No 309
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=38.62 E-value=52 Score=24.75 Aligned_cols=62 Identities=18% Similarity=0.163 Sum_probs=39.3
Q ss_pred chhhHHhhcCCCCchhhhhHHHHhhccCChhHHHHhhhcCCCCCcchHHHHHHHHHhcCCcchH
Q 041183 2 IYSLLIKNGHHLDPILSTTLISHFTKFADFRRAFRFLFDTQNRDIITYNALISGLARFCQSGPA 65 (760)
Q Consensus 2 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 65 (760)
|+..|.+.||-. ..-... |....+....+.|.++++.++.+...+|..++.++...++..-|
T Consensus 26 vld~L~~~~vlt-~~~~e~-I~~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 26 LWDVLLSRELFR-PHMIED-IQRAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp THHHHHHTTSSC-HHHHHH-HHTSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHcCCCC-HHHHHH-HHhccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 456666666332 222121 22211225678899999999988888999999999776665444
No 310
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=38.48 E-value=2.6e+02 Score=26.44 Aligned_cols=20 Identities=5% Similarity=0.024 Sum_probs=12.3
Q ss_pred HHHHhhccCChhHHHHhhhc
Q 041183 21 LISHFTKFADFRRAFRFLFD 40 (760)
Q Consensus 21 l~~~~~~~~~~~~a~~~~~~ 40 (760)
.+...++.|+.+....++..
T Consensus 27 ~L~~A~~~g~~~~v~~ll~~ 46 (351)
T 3utm_A 27 ELLEAARSGNEEKLMALLTP 46 (351)
T ss_dssp HHHHHHHHTCHHHHHHHCCT
T ss_pred hHHHHHHcCCHHHHHHHHHh
Confidence 34455567777766666654
No 311
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=37.83 E-value=54 Score=31.73 Aligned_cols=60 Identities=17% Similarity=0.278 Sum_probs=38.9
Q ss_pred hhhHHHHhhccCChhHHHHhhhcCCCCCcc---hHHHHHHHHHhcC-CcchHHHHHHHHHhCCC
Q 041183 18 STTLISHFTKFADFRRAFRFLFDTQNRDII---TYNALISGLARFC-QSGPALKLFDRLRYQGL 77 (760)
Q Consensus 18 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~~~-~~~~A~~~~~~m~~~~~ 77 (760)
...++.-|...|+.++|.+.++++..|.-. .+..+..++-+.. .-+.+..++..+.+.|+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 467899999999999999999999877521 2222333332221 22346677777776543
No 312
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=37.52 E-value=1.3e+02 Score=28.02 Aligned_cols=116 Identities=9% Similarity=-0.025 Sum_probs=57.7
Q ss_pred hhHHHHhhccCChhHHHHhhhcCCCCC---cchHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCcc---cHHHHHHHhc
Q 041183 19 TTLISHFTKFADFRRAFRFLFDTQNRD---IITYNALISGLARFCQSGPALKLFDRLRYQGLRPDAF---TFSSLVKACG 92 (760)
Q Consensus 19 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~ 92 (760)
.+.+...+..|+.+-+..+++.-..++ ..-++ -+...+..|+.+ +.+.+.+.|..++.. -.+.|..++
T Consensus 60 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~g~~~----~v~~Ll~~ga~~~~~~~~g~t~L~~A~- 133 (285)
T 3d9h_A 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVS-PLHEACLGGHLS----CVKILLKHGAQVNGVTADWHTPLFNAC- 133 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCC-HHHHHHHTTCHH----HHHHHHHTTCCSSCCCTTCCCHHHHHH-
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCC-HHHHHHHCCcHH----HHHHHHHCCCCCCCCCCCCCCHHHHHH-
Confidence 455666666777777666666543332 22223 333344555543 344444455544432 223333332
Q ss_pred CCCchhHHHHHHHHhcCCCCchh-hhHHHHHHHhcCChhhHHHHhhhcCC
Q 041183 93 SLQENEIVHGVCLKLGFSSRVYL-VSGFIENYAKSGEIVSAEMCFRDCLD 141 (760)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~ 141 (760)
..+.. ++.+.+.+.|..++... ..+.+...+..|+.+-+..+++.-..
T Consensus 134 ~~~~~-~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 182 (285)
T 3d9h_A 134 VSGSW-DCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN 182 (285)
T ss_dssp HHTCH-HHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred HcCHH-HHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 22322 45566666665544221 23445555667777777766665443
No 313
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=37.16 E-value=1.9e+02 Score=24.31 Aligned_cols=67 Identities=6% Similarity=-0.156 Sum_probs=33.8
Q ss_pred CCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 041183 611 LIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP-IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQ 677 (760)
Q Consensus 611 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 677 (760)
..-|+......+..--..+++.+....+..-+ -.--...|......+...|++.+|.++|+..++..
T Consensus 59 YknD~RyLklWl~ya~~~~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 59 YYSDPRFLNLWLKLGRLCNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp GTTCHHHHHHHHHHHHHCSCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHhcCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44455444444433323344333333333222 23345556666666666677777777777766643
No 314
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=36.74 E-value=30 Score=23.15 Aligned_cols=48 Identities=19% Similarity=0.040 Sum_probs=28.0
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC
Q 041183 668 LAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEP 716 (760)
Q Consensus 668 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 716 (760)
+.++.+.++.| +......-.-.-...|+.+.|+..+-+|...+..++.
T Consensus 11 e~l~~L~emFP-~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 11 EDLKAIQDMFP-NMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHCS-SSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHCC-CCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 33444455566 3333333333445667788888888877766655543
No 315
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=36.52 E-value=2.2e+02 Score=24.99 Aligned_cols=155 Identities=12% Similarity=-0.057 Sum_probs=89.0
Q ss_pred hhHHHHhhccCChhHHHHhhhc-CCC---CCcchHHHHHHHHHhcCCcchHHHHHHHHHhCC----CCCCcccHHHHHHH
Q 041183 19 TTLISHFTKFADFRRAFRFLFD-TQN---RDIITYNALISGLARFCQSGPALKLFDRLRYQG----LRPDAFTFSSLVKA 90 (760)
Q Consensus 19 ~~l~~~~~~~~~~~~a~~~~~~-~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~----~~p~~~~~~~ll~~ 90 (760)
.+.+...++.|+.+-...+++. -.. ++..-++ .+...+..|+.+-+..+++.-.... ...+..-.+.|..+
T Consensus 4 ~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A 82 (232)
T 2rfa_A 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGET-ALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIA 82 (232)
T ss_dssp TCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCC-HHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHH
Confidence 3456666778888888888875 222 2333333 3444455666655544444321110 01122233444444
Q ss_pred hcCCCchhHHHHHHHHhcCCCCchh---------------hhHHHHHHHhcCChhhHHHHhhhcCCC---CceeHHHHHH
Q 041183 91 CGSLQENEIVHGVCLKLGFSSRVYL---------------VSGFIENYAKSGEIVSAEMCFRDCLDL---DNVAYTAMVC 152 (760)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~ 152 (760)
+ ..++. ++.+.+.+.|..++... -.+.+...+..|+.+-+..+++.-.++ |..-. +.+.
T Consensus 83 ~-~~~~~-~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~-t~L~ 159 (232)
T 2rfa_A 83 V-INQNV-NLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGN-TVLH 159 (232)
T ss_dssp H-HTTCH-HHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC-CHHH
T ss_pred H-HcCCH-HHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC-CHHH
Confidence 3 33333 56777778887766531 344556667788888888888765443 22233 3445
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCC
Q 041183 153 GYVWNGEFDKSKEVFVEMRSLGLEL 177 (760)
Q Consensus 153 ~~~~~g~~~~A~~~~~~m~~~g~~p 177 (760)
..+..|+.+-+..+++.+.+.|..+
T Consensus 160 ~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 160 ILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp HHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHcCChHHHHHHHHHHHhcCCch
Confidence 5667888888888888888887654
No 316
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=35.71 E-value=1.4e+02 Score=28.52 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=21.6
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041183 680 NESTYVLLSNLYASAGMWNDVGKLRKEMK 708 (760)
Q Consensus 680 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (760)
..-.|..++..+.+.+++.+|++.|-+.-
T Consensus 295 HvYPYtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 295 HIYPYTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CccchhhhhhhhhhcchHHHHHHHHHHHH
Confidence 55667777778888888888888777654
No 317
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=34.49 E-value=1.8e+02 Score=23.43 Aligned_cols=138 Identities=15% Similarity=0.028 Sum_probs=75.2
Q ss_pred hHHHHhhccCChhHHHHhhhcCC-CC---CcchHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCcc---cHHHHHHHhc
Q 041183 20 TLISHFTKFADFRRAFRFLFDTQ-NR---DIITYNALISGLARFCQSGPALKLFDRLRYQGLRPDAF---TFSSLVKACG 92 (760)
Q Consensus 20 ~l~~~~~~~~~~~~a~~~~~~~~-~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~ 92 (760)
..+...++.|+.+.+..+++... .+ +..-++ .+.. +..|+.+ +.+.+.+.|..++.. -.+.|..++
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~-~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~- 76 (156)
T 1bd8_A 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKT-ALQV-MMFGSTA----IALELLKQGASPNVQDTSGTSPVHDAA- 76 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCC-HHHH-SCTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH-
T ss_pred hHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCc-HHHH-HHcCCHH----HHHHHHHCCCCCCCcCCCCCCHHHHHH-
Confidence 44566677899999888887721 22 222333 3344 6666654 444455566655443 334444443
Q ss_pred CCCchhHHHHHHHHhcCCCCch--hhhHHHHHHHhcCChhhHHHHhhhcCCCC---ceeHHHHHHHHHhcCChhHHHHHH
Q 041183 93 SLQENEIVHGVCLKLGFSSRVY--LVSGFIENYAKSGEIVSAEMCFRDCLDLD---NVAYTAMVCGYVWNGEFDKSKEVF 167 (760)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~ 167 (760)
..|.. ++.+.+.+.|..++.. .-.+.+...+..|+.+-+.-+++. ..++ ..-.+ -+...++.|+.+-+.-++
T Consensus 77 ~~~~~-~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t-~l~~A~~~~~~~~v~~Ll 153 (156)
T 1bd8_A 77 RTGFL-DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLT-PLELALQRGAQDLVDILQ 153 (156)
T ss_dssp HTTCH-HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCC-HHHHHHHSCCHHHHHHHH
T ss_pred HcCcH-HHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCC-HHHHHHHcCcHHHHHHHH
Confidence 33333 5667777787765532 223345555677888877777766 4432 22222 333445666665544443
No 318
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=32.74 E-value=63 Score=29.43 Aligned_cols=88 Identities=13% Similarity=0.027 Sum_probs=42.8
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCCCCc-------ccHHHHHHHhcC--CCchhHHHHHHHHhcCCCCc----------
Q 041183 53 ISGLARFCQSGPALKLFDRLRYQGLRPDA-------FTFSSLVKACGS--LQENEIVHGVCLKLGFSSRV---------- 113 (760)
Q Consensus 53 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~--~~~~~~~~~~~~~~~~~~~~---------- 113 (760)
+...++.|+.+....+++.+.+.|..++. .-.+.|..++.. .|+. ++.+.+.+.|..++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~-~~v~~Ll~~g~~~~~~~~~~~~~~~ 84 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVN-ACIMPLLQIDKDSGNPKPLVNAQCT 84 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBC-TTHHHHHHHHHHTTCSSCGGGCCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchH-HHHHHHHhcCCcccchhhhcccccc
Confidence 44455566666666666666665554443 233444444322 1322 333334444332220
Q ss_pred ---hhhhHHHHHHHhcCChhhHHHHhhhcCC
Q 041183 114 ---YLVSGFIENYAKSGEIVSAEMCFRDCLD 141 (760)
Q Consensus 114 ---~~~~~li~~~~~~g~~~~A~~~~~~~~~ 141 (760)
..-.+.+...+..|+.+-+..+++.-..
T Consensus 85 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 115 (256)
T 2etb_A 85 DEFYQGHSALHIAIEKRSLQCVKLLVENGAD 115 (256)
T ss_dssp STTTTTCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cccccCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 1123334445567777777777765444
No 319
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=32.67 E-value=1.6e+02 Score=28.77 Aligned_cols=55 Identities=15% Similarity=0.214 Sum_probs=41.5
Q ss_pred CCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCC-CChHHHHHHHHHHHHHH
Q 041183 679 DNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSH-SQSKEIYKELIKLYEHM 754 (760)
Q Consensus 679 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 754 (760)
...-.|..++..+++.+++.+|++.|-+.-+- .+..++ .+..|||.++-++.+++
T Consensus 316 ~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V---------------------i~~YNY~reDeEIYKEf~eIAnel 371 (550)
T 3u84_A 316 EHIYPYMYLAGYHCRNRNVREALQAWADTATV---------------------IQDYNYCREDEEIYKEFFEVANDV 371 (550)
T ss_dssp CCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------HTTSCCCGGGHHHHHHHHHHHHTH
T ss_pred CCccceeecchhhhhcchHHHHHHHHHHHHHH---------------------HHHcCCCcchHHHHHHHHHHHHHh
Confidence 36677889999999999999999999876532 223334 67789999988877653
No 320
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.51 E-value=2.3e+02 Score=32.12 Aligned_cols=47 Identities=11% Similarity=-0.166 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhc-cCCCCch----hHHHHHHHHHhc
Q 041183 648 HIWQSLLSACTIYGNIDLGLLAGSKLLE-LQPDNES----TYVLLSNLYASA 694 (760)
Q Consensus 648 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~p~~~~----~~~~l~~~~~~~ 694 (760)
..|..++..+-+.+-++-+.++.+.+++ ..++++. .+..+..+.+..
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 3667778888888899999888888887 4455544 444444444433
No 321
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=31.82 E-value=1.2e+02 Score=31.22 Aligned_cols=71 Identities=8% Similarity=0.055 Sum_probs=32.2
Q ss_pred HHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHH
Q 041183 621 IVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLY 691 (760)
Q Consensus 621 l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 691 (760)
|++..-..+.++.|..+|..+. .+.+...|+.|.-.....|+.-.|.-.|-+++....+.+.+...+...+
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 3333333444455555555441 2333444555544444455555555555555443332444444444443
No 322
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=31.10 E-value=2.2e+02 Score=23.31 Aligned_cols=142 Identities=13% Similarity=0.060 Sum_probs=74.3
Q ss_pred HHHhhccCChhHHHHhhhcCCC---CCcchHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCcc---cHHHHHHHhcCCC
Q 041183 22 ISHFTKFADFRRAFRFLFDTQN---RDIITYNALISGLARFCQSGPALKLFDRLRYQGLRPDAF---TFSSLVKACGSLQ 95 (760)
Q Consensus 22 ~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~ 95 (760)
+...+..|+.+-...+++.-.. ++..-++. +...+..|+. ++++.+.+.|..|+.. ..+.+..++ ..+
T Consensus 7 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~-L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~ 80 (167)
T 3v31_A 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTP-LMWAAAHGQI----AVVEFLLQNGADPQLLGKGRESALSLAC-SKG 80 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCH-HHHHHHTTCH----HHHHHHHHTTCCTTCCCTTCCCHHHHHH-HHT
T ss_pred HHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCH-HHHHHHCCCH----HHHHHHHHcCCCCCCcCCCCCcHHHHHH-HcC
Confidence 4555678888888777765432 23333333 3444455553 4455555666655532 223333332 233
Q ss_pred chhHHHHHHHHhcCCCCchh--hhHHHHHHHhcCChhhHHHHhhhcCCCC---ceeHHHHHHHHHhcCChhHHHHHHHHH
Q 041183 96 ENEIVHGVCLKLGFSSRVYL--VSGFIENYAKSGEIVSAEMCFRDCLDLD---NVAYTAMVCGYVWNGEFDKSKEVFVEM 170 (760)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m 170 (760)
.. ++.+.+.+.|..++... -.+.+...+..|+.+-+..+++.-..++ ..-+ +.+...++.|+.+-+.-+++..
T Consensus 81 ~~-~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~~~~L~~~~ 158 (167)
T 3v31_A 81 YT-DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGY-NSMDLAVALGYRSVQQVIESHL 158 (167)
T ss_dssp CH-HHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHHTCHHHHHHHHHHH
T ss_pred CH-HHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHcCcHHHHHHHHHHH
Confidence 32 56666777776665432 2234445556777777777776544322 2222 2334445666666655555554
Q ss_pred H
Q 041183 171 R 171 (760)
Q Consensus 171 ~ 171 (760)
.
T Consensus 159 ~ 159 (167)
T 3v31_A 159 L 159 (167)
T ss_dssp H
T ss_pred H
Confidence 4
No 323
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=30.22 E-value=2.8e+02 Score=24.34 Aligned_cols=29 Identities=17% Similarity=0.129 Sum_probs=20.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 041183 151 VCGYVWNGEFDKSKEVFVEMRSLGLELNE 179 (760)
Q Consensus 151 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 179 (760)
+...++.|+.+-+..+++.+.+.|..++.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 41 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDI 41 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 44566778888888888877777765543
No 324
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=28.87 E-value=2.8e+02 Score=24.25 Aligned_cols=148 Identities=13% Similarity=0.031 Sum_probs=81.3
Q ss_pred hhHHHHhhccCChhHHHHhhhcCC----CCCcchHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCcc---cHHHHHHHh
Q 041183 19 TTLISHFTKFADFRRAFRFLFDTQ----NRDIITYNALISGLARFCQSGPALKLFDRLRYQGLRPDAF---TFSSLVKAC 91 (760)
Q Consensus 19 ~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~ 91 (760)
+..+...++.|+++....+++.-. .++..-++.+ ...+..|+. ++++.+.+.|..++.. ..+.|..++
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 81 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTAL-HWACSAGHT----EIVEFLLQLGVPVNDKDDAGWSPLHIAA 81 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHH-HHHHHHTCH----HHHHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred cchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHH-HHHHHcCcH----HHHHHHHHhCCCCCCcCCCCCCHHHHHH
Confidence 456777888999999988886543 2333333444 444455554 4455556667655442 233443333
Q ss_pred cCCCchhHHHHHHHHhcCCCCchh--hhHHHHHHHhcCChhhHHHHhhhcCCCCc---eeHHHHHHHHHhcCChhHHHHH
Q 041183 92 GSLQENEIVHGVCLKLGFSSRVYL--VSGFIENYAKSGEIVSAEMCFRDCLDLDN---VAYTAMVCGYVWNGEFDKSKEV 166 (760)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~ 166 (760)
..+.. ++.+.+.+.|..++... ..+.+...+..|+.+-+..+++.-..++. ...+ .+...+..|+.+ +
T Consensus 82 -~~~~~-~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~ 154 (231)
T 3aji_A 82 -SAGXD-EIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDAT-AMHRAAAKGNLK----M 154 (231)
T ss_dssp -HHTCH-HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHHTCHH----H
T ss_pred -HcCHH-HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCc-HHHHHHHcCCHH----H
Confidence 33333 56677777777665322 23445556677888887777765544322 2222 333444556654 3
Q ss_pred HHHHHHCCCCCC
Q 041183 167 FVEMRSLGLELN 178 (760)
Q Consensus 167 ~~~m~~~g~~p~ 178 (760)
++.+.+.|..++
T Consensus 155 v~~Ll~~g~~~~ 166 (231)
T 3aji_A 155 VHILLFYKASTN 166 (231)
T ss_dssp HHHHHHTTCCSC
T ss_pred HHHHHhcCCCcc
Confidence 344445565544
No 325
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=28.44 E-value=3.8e+02 Score=25.24 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=9.1
Q ss_pred hHHHHhhccCChhHHHHhhh
Q 041183 20 TLISHFTKFADFRRAFRFLF 39 (760)
Q Consensus 20 ~l~~~~~~~~~~~~a~~~~~ 39 (760)
+.+...+..|+.+-+..+++
T Consensus 60 t~L~~A~~~g~~~~v~~Ll~ 79 (351)
T 3utm_A 60 TPLHLAAGYNRVRIVQLLLQ 79 (351)
T ss_dssp CHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHH
Confidence 34444444555444444444
No 326
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=28.28 E-value=2e+02 Score=25.43 Aligned_cols=149 Identities=10% Similarity=-0.058 Sum_probs=82.2
Q ss_pred hhHHHHhhccCChhHHHHhhhcCCCCC---cchHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCcc---cHHHHHHHhc
Q 041183 19 TTLISHFTKFADFRRAFRFLFDTQNRD---IITYNALISGLARFCQSGPALKLFDRLRYQGLRPDAF---TFSSLVKACG 92 (760)
Q Consensus 19 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~ 92 (760)
.+.+...+..|+.+-+..+++.-..++ ...++ .+...+..|+.+ +++.+.+.|..++.. ..+.+..++
T Consensus 12 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~- 85 (237)
T 3b7b_A 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRT-PLMEAAENNHLE----AVKYLIKAGALVDPKDAEGSTCLHLAA- 85 (237)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHTTCHH----HHHHHHTTTCCCCCCCTTSCCHHHHHH-
T ss_pred CCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCC-HHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCcHHHHHH-
Confidence 456677778899887777776644332 22333 344445556644 455556666655432 233444333
Q ss_pred CCCchhHHHHHHHHhc-CCCCch--hhhHHHHHHHhcCChhhHHHHhhhcCCCCc---eeHHHHHHHHHhcCChhHHHHH
Q 041183 93 SLQENEIVHGVCLKLG-FSSRVY--LVSGFIENYAKSGEIVSAEMCFRDCLDLDN---VAYTAMVCGYVWNGEFDKSKEV 166 (760)
Q Consensus 93 ~~~~~~~~~~~~~~~~-~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~ 166 (760)
..+.. ++.+.+.+.| ..++.. .-.+.+...+..|+.+-+..+++....++. ...+ .+...++.|+.+ +
T Consensus 86 ~~~~~-~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~ 159 (237)
T 3b7b_A 86 KKGHY-EVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENI-CLHWAAFSGCVD----I 159 (237)
T ss_dssp HTTCH-HHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHHCCHH----H
T ss_pred HcCCH-HHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCC-HHHHHHHCCCHH----H
Confidence 34443 5666677766 444322 223445556678898888888876554322 2222 334445566654 4
Q ss_pred HHHHHHCCCCCCh
Q 041183 167 FVEMRSLGLELNE 179 (760)
Q Consensus 167 ~~~m~~~g~~p~~ 179 (760)
++.+.+.|..++.
T Consensus 160 ~~~Ll~~g~~~~~ 172 (237)
T 3b7b_A 160 AEILLAAKCDLHA 172 (237)
T ss_dssp HHHHHTTTCCTTC
T ss_pred HHHHHHcCCCCCC
Confidence 5555566665543
No 327
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=28.14 E-value=1.6e+02 Score=26.45 Aligned_cols=21 Identities=14% Similarity=0.036 Sum_probs=12.6
Q ss_pred HHHHHhcCCccHHHHHHHHHH
Q 041183 349 IAGYSENGFFNQALDMFCHML 369 (760)
Q Consensus 349 i~~~~~~g~~~~a~~~~~~m~ 369 (760)
++.+....++++|.+++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 455556666666666666554
No 328
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=27.82 E-value=1.7e+02 Score=26.38 Aligned_cols=20 Identities=0% Similarity=-0.193 Sum_probs=11.4
Q ss_pred HHhhhcCCChHHHHHHHhcC
Q 041183 318 ISMYGKCGQVNDARSIFDYL 337 (760)
Q Consensus 318 i~~~~~~g~~~~A~~~~~~~ 337 (760)
+...+..|+.+-+.-+++.-
T Consensus 97 L~~A~~~g~~~~v~~Ll~~g 116 (260)
T 3jxi_A 97 LHIAIERRCKHYVELLVEKG 116 (260)
T ss_dssp HHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhCC
Confidence 34445566666666666544
No 329
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=26.99 E-value=3.6e+02 Score=24.55 Aligned_cols=24 Identities=17% Similarity=0.036 Sum_probs=10.5
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCC
Q 041183 654 LSACTIYGNIDLGLLAGSKLLELQP 678 (760)
Q Consensus 654 ~~~~~~~~~~~~A~~~~~~~~~~~p 678 (760)
+.++...|+ ..+...+.+++...+
T Consensus 242 ~~aL~~i~~-~~~~~~L~~~l~~~~ 265 (280)
T 1oyz_A 242 IEAAGELGD-KTLLPVLDTMLYKFD 265 (280)
T ss_dssp HHHHHHHCC-GGGHHHHHHHHTTSS
T ss_pred HHHHHhcCc-hhhhHHHHHHHhcCC
Confidence 334444444 244445555544333
No 330
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=26.27 E-value=3.2e+02 Score=23.71 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=30.5
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 041183 555 AQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGL 594 (760)
Q Consensus 555 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 594 (760)
.+..+.+.|+-.+-+|.+.| .|....-..++.+...-|.
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 34578999999999999999 7777777777777766664
No 331
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=26.08 E-value=2e+02 Score=26.64 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=11.6
Q ss_pred hHHHHhhccCChhHHHHhhhcC
Q 041183 20 TLISHFTKFADFRRAFRFLFDT 41 (760)
Q Consensus 20 ~l~~~~~~~~~~~~a~~~~~~~ 41 (760)
+.+...+..|+.+.+..+++.-
T Consensus 42 t~l~~A~~~g~~~~v~~Ll~~g 63 (299)
T 1s70_B 42 AVFLAACSSGDTEEVLRLLERG 63 (299)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHC
T ss_pred cHHHHHHHcCCHHHHHHHHHcC
Confidence 3444445556666555555543
No 332
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=25.99 E-value=2.8e+02 Score=22.88 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC
Q 041183 562 EVSNLFNKMSKFGVKPD-EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIP 613 (760)
Q Consensus 562 ~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 613 (760)
++..+|..|..+|+--. ...|......+...|++.+|.++|+.-.+ .+-.|
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~-~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ-NQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCcc
Confidence 37778888888877654 35566667777888888888888888777 55555
No 333
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=25.58 E-value=2e+02 Score=21.12 Aligned_cols=60 Identities=12% Similarity=0.067 Sum_probs=37.4
Q ss_pred HHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHH
Q 041183 499 AIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHE 562 (760)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 562 (760)
.++..+.+.++ .+..-+..+.. .....+.|..+++.+...+...|..++.++.+.+...-
T Consensus 26 ~lld~L~~~~v-lt~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~L 85 (94)
T 2p1h_A 26 YIMDHMISDGF-LTISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDL 85 (94)
T ss_dssp HHHHHHHHHTS-SCHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHH
Confidence 45555555554 33333333222 24567788888888888888888888888877665443
No 334
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=25.57 E-value=2.2e+02 Score=25.66 Aligned_cols=29 Identities=7% Similarity=-0.120 Sum_probs=18.5
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041183 680 NESTYVLLSNLYASAGMWNDVGKLRKEMK 708 (760)
Q Consensus 680 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (760)
.+......+..+.+.|+-++|.++|=+..
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 45555666666777777777776665543
No 335
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=25.14 E-value=3.9e+02 Score=24.31 Aligned_cols=60 Identities=8% Similarity=-0.044 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 644 PPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 644 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
.++...-...+.++...|+.+ +...+...+.. |+ .-...+.++.+.|. .++...+.++.+
T Consensus 203 d~~~~vR~~A~~aL~~~~~~~-~~~~L~~~l~d-~~---vr~~a~~aL~~i~~-~~~~~~L~~~l~ 262 (280)
T 1oyz_A 203 DKNEEVRIEAIIGLSYRKDKR-VLSVLCDELKK-NT---VYDDIIEAAGELGD-KTLLPVLDTMLY 262 (280)
T ss_dssp CSCHHHHHHHHHHHHHTTCGG-GHHHHHHHHTS-SS---CCHHHHHHHHHHCC-GGGHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCCHh-hHHHHHHHhcC-cc---HHHHHHHHHHhcCc-hhhhHHHHHHHh
Confidence 455555555555555555433 33333333321 21 22333444555554 345555555443
No 336
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=25.11 E-value=2.1e+02 Score=28.79 Aligned_cols=70 Identities=20% Similarity=0.153 Sum_probs=36.1
Q ss_pred HhhcCCCCchhhhhHHHHhhccCChhHHHHhhhcCCC---CCcchHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 041183 7 IKNGHHLDPILSTTLISHFTKFADFRRAFRFLFDTQN---RDIITYNALISGLARFCQSGPALKLFDRLRYQG 76 (760)
Q Consensus 7 ~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 76 (760)
.+.|++--...|-...+.+...|++++|-++.-..+. ++..|.+.+-.+=...|...--+..|..+.+.|
T Consensus 353 ~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 353 VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS
T ss_pred HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC
Confidence 3444555555666666666677777777666655543 223333333333333344444555555555544
No 337
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=25.05 E-value=1.8e+02 Score=26.18 Aligned_cols=132 Identities=14% Similarity=0.062 Sum_probs=54.1
Q ss_pred hhhHHhhcCCCCc---hhhhhHHHHhhccCChhHHHHhhhcCCCCCc---chHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 041183 3 YSLLIKNGHHLDP---ILSTTLISHFTKFADFRRAFRFLFDTQNRDI---ITYNALISGLARFCQSGPALKLFDRLRYQG 76 (760)
Q Consensus 3 ~~~~~~~g~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 76 (760)
...+.+.|..++. ..-.+.+...+..|+.+-+..+++.-..++. ..++.+ ...+..|+.+ +++.+.+.|
T Consensus 39 v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~~ 113 (253)
T 1yyh_A 39 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPL-HAAVSADAQG----VFQILIRNR 113 (253)
T ss_dssp -------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHTCHH----HHHHHHHST
T ss_pred HHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHH----HHHHHHHcC
Confidence 3445556644422 2234455666667777766666665433322 222333 3333444433 333344433
Q ss_pred C-CC---CcccHHHHHHHhcCCCchhHHHHHHHHhcCCCCchh--hhHHHHHHHhcCChhhHHHHhhhcCC
Q 041183 77 L-RP---DAFTFSSLVKACGSLQENEIVHGVCLKLGFSSRVYL--VSGFIENYAKSGEIVSAEMCFRDCLD 141 (760)
Q Consensus 77 ~-~p---~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~ 141 (760)
. .+ +..-.+.|..++ ..+. .++.+.+.+.|..++... -.+.+...+..|+.+-+..+++.-..
T Consensus 114 ~~~~~~~~~~g~t~L~~A~-~~~~-~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 182 (253)
T 1yyh_A 114 ATDLDARMHDGTTPLILAA-RLAV-EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 182 (253)
T ss_dssp TSCTTCCCTTCCCHHHHHH-HHTC-SSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CCCccccCCCCCcHHHHHH-HcCh-HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 2 11 122233333332 2222 245555666666554322 23344445566777766666655433
No 338
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=24.61 E-value=1e+02 Score=30.08 Aligned_cols=121 Identities=11% Similarity=0.122 Sum_probs=0.0
Q ss_pred hhHHHHhhccCChhHHHHhhhcCCCCC----cchHHHHHHHHHhcCCcch-HHHHHHHHHhCCCCCCcccHHHHHHHhcC
Q 041183 19 TTLISHFTKFADFRRAFRFLFDTQNRD----IITYNALISGLARFCQSGP-ALKLFDRLRYQGLRPDAFTFSSLVKACGS 93 (760)
Q Consensus 19 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~-A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 93 (760)
..++.-|...|+.++|.+.++++..|+ ...+..+..++-+.....+ +..++..+...|+-+.......+...+..
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~lle~ 95 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQ 95 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh
Q ss_pred CCchh-------HHHHHHHHhcCCCCchhhhHHHHHHHhcCChhhHHHHhhhc
Q 041183 94 LQENE-------IVHGVCLKLGFSSRVYLVSGFIENYAKSGEIVSAEMCFRDC 139 (760)
Q Consensus 94 ~~~~~-------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 139 (760)
..|.. ..+..+...-+.-+....+.+-..+...+...-...++..+
T Consensus 96 l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~G~~~~l~l~vl~~~ 148 (364)
T 3l6a_A 96 CPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQL 148 (364)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGGGTTTTHHHHHHHHH
T ss_pred ChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcccchHHHHHHHHHHH
No 339
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=24.52 E-value=1.3e+02 Score=27.26 Aligned_cols=88 Identities=14% Similarity=-0.052 Sum_probs=43.4
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCCCCcc-------cHHHHHHHhc--CCCchhHHHHHHHHhcCCCCc----------
Q 041183 53 ISGLARFCQSGPALKLFDRLRYQGLRPDAF-------TFSSLVKACG--SLQENEIVHGVCLKLGFSSRV---------- 113 (760)
Q Consensus 53 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-------~~~~ll~~~~--~~~~~~~~~~~~~~~~~~~~~---------- 113 (760)
+...++.|+.+....+++.+.+.|..++.. -.+.|..++. +.|.. ++.+.+.+.|..+..
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~-~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRN-DTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBC-THHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCH-HHHHHHHHhcccccchHhhhccccc
Confidence 344456677777666666666666555532 2344444432 33333 333333333321110
Q ss_pred ---hhhhHHHHHHHhcCChhhHHHHhhhcCC
Q 041183 114 ---YLVSGFIENYAKSGEIVSAEMCFRDCLD 141 (760)
Q Consensus 114 ---~~~~~li~~~~~~g~~~~A~~~~~~~~~ 141 (760)
..-.+.+...+..|+.+-+..+++.-..
T Consensus 88 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 88 DVYYRGQTALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp CSSEESBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 1222344445566777777777765444
No 340
>3crd_A Raidd; caspase recruitment domain, apoptosis, homophilic interaction; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=23.98 E-value=1.7e+02 Score=21.97 Aligned_cols=47 Identities=11% Similarity=0.150 Sum_probs=33.5
Q ss_pred ccCChhHHHHhhhcCCCCCcchHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 041183 27 KFADFRRAFRFLFDTQNRDIITYNALISGLARFCQSGPALKLFDRLRYQG 76 (760)
Q Consensus 27 ~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 76 (760)
.....+.|.++++.++.+...+|..++.++.. .......++.....|
T Consensus 47 ~~t~~~k~~~Lld~L~~rG~~Af~~F~~aL~~---~~~La~~L~~~~~~~ 93 (100)
T 3crd_A 47 QTTGLRKTMLLLDILPSRGPKAFDTFLDSLQE---FPWVREKLKKAREEA 93 (100)
T ss_dssp CSSSHHHHHHHHHHTTTSCSSCHHHHHHHCTT---HHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHh---CHHHHHHHHhhcccc
Confidence 45567888899988888888889998888864 444445555544444
No 341
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.82 E-value=1.7e+02 Score=23.85 Aligned_cols=59 Identities=10% Similarity=0.032 Sum_probs=27.1
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCC
Q 041183 570 MSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGL 630 (760)
Q Consensus 570 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 630 (760)
+.+.|++++..-.. ++..+...+..-.|.++++.+.+ .+...+..|...-++.+...|-
T Consensus 13 l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l~~-~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKALEG-KFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHHGG-GCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHH-hCCCCChhhHHHHHHHHHHCCC
Confidence 44455555443222 22333334444555556666554 2333444444445555555553
No 342
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=23.59 E-value=2.1e+02 Score=25.18 Aligned_cols=20 Identities=15% Similarity=0.027 Sum_probs=11.0
Q ss_pred HHHhhhcCChHHHHHHHHhC
Q 041183 622 VDLLGRVGLLEGAKMTIDQM 641 (760)
Q Consensus 622 ~~~~~~~g~~~~A~~~~~~~ 641 (760)
+-.|.+.|.+++|.+++++.
T Consensus 121 V~VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHH
Confidence 33455556666666666554
No 343
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=23.49 E-value=3.7e+02 Score=23.42 Aligned_cols=54 Identities=7% Similarity=-0.046 Sum_probs=28.5
Q ss_pred HHHHhcCcCCHHHHHHHHHHHHHhCCCC---------ChhHHHHHHHHHHhcCChHHHHHHHhh
Q 041183 383 ILEAVSNSKSLKQAMQVHSHIIKSGFLL---------DDSMISCLITTYGKCNALNESKRVLSE 437 (760)
Q Consensus 383 ll~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~ 437 (760)
.+...+..|+.+.+..+++.+.+.|..+ |..- .+-+....+.|+.+-+..+++.
T Consensus 157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g-~tpl~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 157 VLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQG-LTPFKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTS-CCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCC-CCHHHHHHHcCCHHHHHHHHhc
Confidence 3444555667766666666666665433 1111 1233444556666666555554
No 344
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=22.94 E-value=1e+02 Score=22.78 Aligned_cols=34 Identities=15% Similarity=0.044 Sum_probs=26.8
Q ss_pred cCChhHHHHhhhcCCCCCcchHHHHHHHHHhcCC
Q 041183 28 FADFRRAFRFLFDTQNRDIITYNALISGLARFCQ 61 (760)
Q Consensus 28 ~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~ 61 (760)
....+.|.++++.++.+...+|..++.++...+.
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGY 82 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCH
Confidence 5667788888888888888888888888877664
No 345
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.39 E-value=3.6e+02 Score=23.33 Aligned_cols=39 Identities=8% Similarity=0.049 Sum_probs=29.9
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 041183 556 QHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGL 594 (760)
Q Consensus 556 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 594 (760)
+..+.+.|+-.+-+|.+.|-.|....-..++.+...-|.
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 457899999999999999888877766666666655553
No 346
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=21.44 E-value=4.7e+02 Score=23.83 Aligned_cols=56 Identities=11% Similarity=0.082 Sum_probs=22.9
Q ss_pred HHHHhhccCChhHHHHhhhcCC----CCCcchHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 041183 21 LISHFTKFADFRRAFRFLFDTQ----NRDIITYNALISGLARFCQSGPALKLFDRLRYQG 76 (760)
Q Consensus 21 l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 76 (760)
.+...+..|+.+-+..+++.-. ..+..-++.+..+.........-..++..+.+.|
T Consensus 114 ~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g 173 (276)
T 4hbd_A 114 ALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLG 173 (276)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcC
Confidence 3444445555555544444332 1222333334333333323333444444444444
No 347
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=21.03 E-value=5.5e+02 Score=29.01 Aligned_cols=53 Identities=9% Similarity=0.133 Sum_probs=37.6
Q ss_pred HHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 041183 417 CLITTYGKCNALNESKRVLSEIDKKNAVHINALASVLVYASCHAEALELYRTIW 470 (760)
Q Consensus 417 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 470 (760)
.++..+...|..+-|.++..-++ .++..-..+..+|...|++++|...|++..
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~~-~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhcHHHHHHHHHhhcC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 36667777888887766554444 455444567778888999999999998753
No 348
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.00 E-value=2.3e+02 Score=20.02 Aligned_cols=61 Identities=11% Similarity=0.107 Sum_probs=37.6
Q ss_pred HHHHHCCCCCCHhhHHHHHHHhcCcC-CHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 041183 366 CHMLEFSLIPNGYTMASILEAVSNSK-SLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNA 427 (760)
Q Consensus 366 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 427 (760)
+.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34556676666544 34555555544 455667777777777666666666666666666654
No 349
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=20.41 E-value=3.2e+02 Score=22.11 Aligned_cols=123 Identities=12% Similarity=0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCCCCcccHHHHHHHhcCCCchhHHHHHHHHhcCCCCchhhh--HHHHHHHhcC
Q 041183 50 NALISGLARFCQSGPALKLFDRLRYQGLRPDAFTFSSLVKACGSLQENEIVHGVCLKLGFSSRVYLVS--GFIENYAKSG 127 (760)
Q Consensus 50 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g 127 (760)
.+.+...++.|+.+....+++.-...-...+..-.+.|..++.... .++.+.+.+.|..++..... +.+...+..|
T Consensus 9 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 86 (165)
T 3twr_A 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNR--VSVVEYLLQHGADVHAKDKGGLVPLHNACSYG 86 (165)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTC--HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred hHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcCh--HHHHHHHHhcCCCCCccCCCCCCHHHHHHHcC
Q ss_pred ChhhHHHHhhhcCCCCceeHH--HHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 041183 128 EIVSAEMCFRDCLDLDNVAYT--AMVCGYVWNGEFDKSKEVFVEMRSLGLELN 178 (760)
Q Consensus 128 ~~~~A~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 178 (760)
+.+-+..+++.-..++..... +.+...+..|+.+ +++.+.+.|..++
T Consensus 87 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~ 135 (165)
T 3twr_A 87 HYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE----ICKLLLQHGADPT 135 (165)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred cHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCc
Done!