BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041185
(306 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6QLM0|TM189_BOVIN Transmembrane protein 189 OS=Bos taurus GN=TMEM189 PE=2 SV=1
Length = 271
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 82/185 (44%), Gaps = 11/185 (5%)
Query: 120 MLAGYIGYVLADLGSGVYHWGIDNYGDESTPIFGSQ-IEAFQGHHRWPRTITRRQF---- 174
ML G +LAD SG+ HWG D +G PI G I F+ HH P ITR F
Sbjct: 78 MLGMVAGALLADFLSGLVHWGADTWGSVELPIVGKAFIRPFREHHIDPTAITRHDFIETN 137
Query: 175 ANNLHALARVIAFTVLPF-----DLLCNDSTIHGFVCMLAGCIMFSQQFHAWAHSTKSKL 229
+N + F ++L FV L F+ Q H W+H T L
Sbjct: 138 GDNCLLTLLPLLNMAYKFRTQSPEVLEQLYPWECFVFCLIIFGTFTNQIHKWSH-TYFGL 196
Query: 230 PPLVVALQDAGVLVSRSQHAAHHRPPYNNNYCIVSGVWNEFLDKQKVFEALEMILFFKLG 289
P VV LQD V++ R H HH P+ +CI +G N L++ + LE I+ G
Sbjct: 197 PCWVVFLQDWHVILPRKHHRIHHVSPHETYFCITTGWLNYPLERMGFWRRLEDIIQALTG 256
Query: 290 VRPRS 294
+PR+
Sbjct: 257 EKPRA 261
>sp|A5PLL7|TM189_HUMAN Transmembrane protein 189 OS=Homo sapiens GN=TMEM189 PE=1 SV=3
Length = 270
Score = 81.3 bits (199), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 11/185 (5%)
Query: 120 MLAGYIGYVLADLGSGVYHWGIDNYGDESTPIFGSQ-IEAFQGHHRWPRTITRRQF--AN 176
+L G ++AD SG+ HWG D +G PI G I F+ HH P ITR F N
Sbjct: 77 ILGVVAGALIADFLSGLVHWGADTWGSVELPIVGKAFIRPFREHHIDPTAITRHDFIETN 136
Query: 177 NLHALARVIAFTVLPFDLLCND----STIHGFVCMLAGCIMF---SQQFHAWAHSTKSKL 229
+ L ++ + + + ++ + C + I+F + Q H W+H T L
Sbjct: 137 GDNCLVTLLPLLNMAYKFRTHSPEALEQLYPWECFVFCLIIFGTFTNQIHKWSH-TYFGL 195
Query: 230 PPLVVALQDAGVLVSRSQHAAHHRPPYNNNYCIVSGVWNEFLDKQKVFEALEMILFFKLG 289
P V LQD V++ R H HH P+ +CI +G N L+K + LE ++ G
Sbjct: 196 PRWVTLLQDWHVILPRKHHRIHHVSPHETYFCITTGWLNYPLEKIGFWRRLEDLIQGLTG 255
Query: 290 VRPRS 294
+PR+
Sbjct: 256 EKPRA 260
>sp|Q99LQ7|TM189_MOUSE Transmembrane protein 189 OS=Mus musculus GN=Tmem189 PE=2 SV=1
Length = 271
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 80/185 (43%), Gaps = 11/185 (5%)
Query: 120 MLAGYIGYVLADLGSGVYHWGIDNYGDESTPIFGSQ-IEAFQGHHRWPRTITRRQF--AN 176
+L G ++AD SG+ HWG D +G PI G I F+ HH P ITR F N
Sbjct: 78 ILGVVAGALVADFLSGLVHWGADTWGSVDLPIVGKAFIRPFREHHIDPTAITRHDFIETN 137
Query: 177 NLHALARVIAFTVLPFDLLCNDSTI-------HGFVCMLAGCIMFSQQFHAWAHSTKSKL 229
+ L ++ + + FV L F+ Q H W+H T L
Sbjct: 138 GDNCLVTLLPLLNMAYKFRTQSPETLEQLYPWECFVFCLTIFGTFTNQIHKWSH-TYLGL 196
Query: 230 PPLVVALQDAGVLVSRSQHAAHHRPPYNNNYCIVSGVWNEFLDKQKVFEALEMILFFKLG 289
P V LQD V++ R H HH P+ +CI +G N L+ + LE ++ G
Sbjct: 197 PYWVTVLQDWHVILPRKHHRIHHVAPHETYFCITTGWLNYPLEVIGFWRRLEDLIQGLTG 256
Query: 290 VRPRS 294
+PR+
Sbjct: 257 EKPRA 261
>sp|Q5UR78|YL630_MIMIV Uncharacterized protein L630 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L630 PE=4 SV=1
Length = 200
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 4/171 (2%)
Query: 125 IGYVLADLGSGVYHWGIDNYGDESTPIFGSQ-IEAFQGHHRWPRTITRRQFANNLHALAR 183
+GY+L+D G+YHW D Y TPI G I + HH PR + + + A+
Sbjct: 14 LGYLLSDFIMGIYHWIKDTYFSPFTPIIGKTFIWGSRLHHVRPRYVLEFTDKDLIIDSAK 73
Query: 184 VIAFTVLPFDLLCNDSTIHGFVCMLAGCIMFSQQFHAWAHSTKSKLPPLVVALQDAGVLV 243
+ P + F+ + I + H + H + P LQ G
Sbjct: 74 WTLSWIGPLFFWFGLTP---FLVTMFIMISLNDVIHKYTHEIDHERPMWATILQRIGFFQ 130
Query: 244 SRSQHAAHHRPPYNNNYCIVSGVWNEFLDKQKVFEALEMILFFKLGVRPRS 294
S +H HH P+ NYC V+ N +L+K ++ LE + + GV+PR+
Sbjct: 131 SHDEHHLHHIAPHEINYCPVTPYVNIWLEKINLWRKLESFVEYLTGVKPRA 181
>sp|B4JBN5|FICD_DROGR Adenosine monophosphate-protein transferase FICD homolog
OS=Drosophila grimshawi GN=GH10751 PE=3 SV=1
Length = 483
Score = 36.2 bits (82), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 192 FDLLCNDSTIHGFVCMLAGCIMFSQQFHAWAHST-KSKLPPLVVALQDAGVLVSRSQHAA 250
F L N+ I FV +A C + + WA S ++P L+ + GVL H A
Sbjct: 403 FLKLANEGDIRPFVRFIADCTEKTLDLYLWATSDLPQQIPMLIQTESEGGVLAQLQSHIA 462
Query: 251 HHRP-PYNNNYCIVSGV 266
P PY + + SGV
Sbjct: 463 QSAPEPYESGSGLDSGV 479
>sp|C4Z4Y1|DAPAT_EUBE2 LL-diaminopimelate aminotransferase OS=Eubacterium eligens (strain
ATCC 27750 / VPI C15-48) GN=dapL PE=3 SV=1
Length = 404
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 36/102 (35%), Gaps = 20/102 (19%)
Query: 169 ITRRQFANNLHALARVIAFTVLPFDLLCNDSTIHGFVCMLAGCIMFSQQFHAWA--HSTK 226
I R F+ N + FTV+P DL C D T+H WA H TK
Sbjct: 243 IELRSFSKNAGFTGVRLGFTVIPKDLKCGDVTLHSL----------------WARRHGTK 286
Query: 227 SKLPPLVVALQDAGVLVSRSQHAAHHRPPY--NNNYCIVSGV 266
P +V V Q + Y NN I+ G+
Sbjct: 287 FNGAPYIVQRAGEAVYSEAGQKQTGEQIAYYMNNAKTILEGL 328
>sp|Q12VB0|RIFK_METBU Riboflavin kinase OS=Methanococcoides burtonii (strain DSM 6242)
GN=ribK PE=3 SV=1
Length = 223
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 31/143 (21%)
Query: 63 TTSTTTAAKSSPPLLNDPALQSTWAHRAWVATGCSTVLVSLAKSIAAAASSHIWLEPMLA 122
T T+T +K++ +L + + +++ + I+ H WLE +
Sbjct: 28 TRYTSTGSKTAARILKQLEEEGS----------IDRLIIPEGQMISITEKGHKWLESEFS 77
Query: 123 GY-------------IGYVLADLGSGVYHWGIDNYGDESTPIFGSQIEAFQGHHRWPRTI 169
Y G V+ LG G Y+ D Y GSQ E G +P T+
Sbjct: 78 DYKHIFCGDEDKVELYGNVITGLGEGQYYIAQDGY--------GSQFEEKLGFKPYPGTL 129
Query: 170 TRRQFANNLHALARVIAFTVLPF 192
R +++ L R ++P
Sbjct: 130 NVRLTSHSADILKRKSQKNIIPI 152
>sp|Q9QZM6|NCKX1_RAT Sodium/potassium/calcium exchanger 1 OS=Rattus norvegicus
GN=Slc24a1 PE=2 SV=1
Length = 1181
Score = 33.1 bits (74), Expect = 2.7, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 10 PLKSLLHPVPTCQHQHRSHSVRVTTCSATS--STNLKPGSNPNQLVIEPRLALSSTTSTT 67
PL+++L P P + + S+R+ + AT+ ST + NP P + ++S T
Sbjct: 276 PLRAVLQPTPATSEEQVTASIRMGSTPATTEGSTAAQRIGNPLSGTSTPAVRIASVTDRE 335
Query: 68 TAAKSSPPLLNDP---ALQSTWAHRAWVATGCSTVLVSLAKSIAA 109
++ L P A+ +T HR V V ++ + S+ A
Sbjct: 336 KRPSTAHGTLVTPQVKAVLTTQVHRCVVVKPAPAVPMTPSPSMTA 380
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.131 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,658,213
Number of Sequences: 539616
Number of extensions: 4271500
Number of successful extensions: 11768
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 11635
Number of HSP's gapped (non-prelim): 128
length of query: 306
length of database: 191,569,459
effective HSP length: 117
effective length of query: 189
effective length of database: 128,434,387
effective search space: 24274099143
effective search space used: 24274099143
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)