Query 041185
Match_columns 306
No_of_seqs 98 out of 109
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 04:35:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3011 Ubiquitin-conjugating 100.0 4E-103 9E-108 723.0 20.0 282 1-306 1-292 (293)
2 PF10520 Kua-UEV1_localn: Kua- 100.0 5.7E-77 1.2E-81 526.8 13.5 169 127-296 1-178 (178)
3 PLN02434 fatty acid hydroxylas 97.2 0.0053 1.2E-07 57.6 12.0 104 156-272 120-225 (237)
4 COG3000 ERG3 Sterol desaturase 94.8 0.11 2.4E-06 48.7 7.6 128 120-272 96-232 (271)
5 PLN02869 fatty aldehyde decarb 93.5 0.12 2.7E-06 54.5 5.5 43 241-284 241-285 (620)
6 PF04304 DUF454: Protein of un 73.3 7.1 0.00015 29.3 4.4 27 147-177 6-32 (71)
7 PF04116 FA_hydroxylase: Fatty 60.7 29 0.00063 26.9 5.8 19 124-142 2-20 (114)
8 KOG1362 Choline transporter-li 50.1 13 0.00027 39.5 2.7 31 114-144 504-535 (577)
9 PLN02220 delta-9 acyl-lipid de 43.9 32 0.00069 33.6 4.2 47 212-259 70-131 (299)
10 KOG1600 Fatty acid desaturase 35.5 29 0.00062 34.6 2.5 46 213-259 82-142 (321)
11 COG2832 Uncharacterized protei 34.7 20 0.00043 31.1 1.1 59 102-167 13-71 (119)
12 cd03505 Delta9-FADS-like The D 31.5 62 0.0013 29.4 3.8 43 211-254 16-67 (178)
13 PF06612 DUF1146: Protein of u 29.6 54 0.0012 23.9 2.5 15 119-133 33-47 (48)
14 TIGR00680 kdpA K+-transporting 27.7 43 0.00093 35.7 2.4 25 276-304 41-65 (563)
15 PF09125 COX2-transmemb: Cytoc 27.0 1.2E+02 0.0026 21.6 3.8 12 89-100 14-25 (38)
16 COG2060 KdpA K+-transporting A 25.8 45 0.00098 35.4 2.1 25 276-304 40-64 (560)
17 PRK00972 tetrahydromethanopter 25.4 66 0.0014 31.6 3.0 76 40-137 28-104 (292)
18 KOG0539 Sphingolipid fatty aci 24.7 98 0.0021 29.7 3.9 60 203-272 168-228 (240)
19 KOG0872 Sterol C5 desaturase [ 24.3 22 0.00048 35.1 -0.4 58 203-273 202-259 (312)
20 PF04206 MtrE: Tetrahydrometha 23.6 92 0.002 30.3 3.6 78 39-137 20-98 (269)
21 cd03508 Delta4-sphingolipid-FA 23.2 1.6E+02 0.0034 28.4 5.1 39 218-256 63-109 (289)
22 cd01060 Membrane-FADS-like The 23.1 1.3E+02 0.0028 23.4 3.8 45 213-257 14-65 (122)
23 cd03511 Rhizopine-oxygenase-li 21.8 1.9E+02 0.0042 26.9 5.3 41 215-255 59-106 (285)
24 cd03508 Delta4-sphingolipid-FA 21.8 1.2E+02 0.0027 29.1 4.1 49 77-126 3-52 (289)
25 PHA00027 lys lysis protein 21.6 25 0.00054 26.9 -0.5 20 123-142 25-44 (58)
26 PF11125 DUF2830: Protein of u 21.6 25 0.00053 26.5 -0.5 20 123-142 21-40 (54)
27 PF00487 FA_desaturase: Fatty 21.3 1.4E+02 0.003 25.3 3.9 44 211-254 17-67 (257)
28 PF14163 SieB: Superinfection 20.7 1.3E+02 0.0028 25.7 3.6 54 90-143 3-62 (151)
29 KOG0873 C-4 sterol methyl oxid 20.4 51 0.0011 32.4 1.2 34 245-279 229-262 (283)
30 PRK05482 potassium-transportin 20.3 62 0.0014 34.5 1.9 24 277-304 39-62 (559)
31 COG1398 OLE1 Fatty-acid desatu 20.2 2E+02 0.0044 28.5 5.2 42 212-254 60-110 (289)
32 PF05106 Phage_holin_3: Phage 20.1 68 0.0015 26.4 1.7 41 93-133 23-64 (100)
No 1
>KOG3011 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-103 Score=723.02 Aligned_cols=282 Identities=54% Similarity=0.956 Sum_probs=271.4
Q ss_pred CccccccCCCCCCCCC-CCCcccCCCcccceeE-EEeeeecccCCCCCCC--------CCcceecccccCCCCCcccccc
Q 041185 1 MAVLSHQHYPLKSLLH-PVPTCQHQHRSHSVRV-TTCSATSSTNLKPGSN--------PNQLVIEPRLALSSTTSTTTAA 70 (306)
Q Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 70 (306)
|+++.|+||++||++| +| +|||+++.|+ |.||.+++ +|+|| .++||+|+|+++|
T Consensus 1 m~~s~~t~yp~~p~~n~~p----~~~~~s~~r~~v~~e~~~~---~p~p~~~~~~pn~~~~lv~e~~~~~p--------- 64 (293)
T KOG3011|consen 1 MATSLQTKYPLRPITNKIP----RSHRPSPDRVPVLCEETTT---NPQPNMLEDDPNGEEKLVVEQRLWGP--------- 64 (293)
T ss_pred CcccccccCCCCcccccCc----hhcCCCCCcCccccccccc---CCCcccccCCCcchhhhhhcccccCC---------
Confidence 8999999999999998 77 9999998885 67999888 67777 3789999999998
Q ss_pred CCCCCCCCCcccchhhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhceeeeeeecCCCCCCc
Q 041185 71 KSSPPLLNDPALQSTWAHRAWVATGCSTVLVSLAKSIAAAASSHIWLEPMLAGYIGYVLADLGSGVYHWGIDNYGDESTP 150 (306)
Q Consensus 71 ~~~~p~~~~~~l~st~~~R~wv~~~~~~i~~~l~~~~~~~~~~~~wl~~i~a~~~g~llADF~SGlvHW~~Dt~Gs~~tP 150 (306)
|+.+|++|+|||.+|.|+.++|+++++++++++.+.+.++.|+++++|+++||++|||+||||||++|||||++||
T Consensus 65 ----~~s~~~~Las~~s~~~~~~~~c~~lf~~~~~~ii~~~~s~~~~~~~La~~aG~i~AD~~SGl~HWaaD~~Gsv~tP 140 (293)
T KOG3011|consen 65 ----PLSNDPTLASTWTHRLWVAAGCTTLFVSFAKSIIGGFGSHLWLEPALAAYAGYITADLGSGVYHWAADNYGSVSTP 140 (293)
T ss_pred ----CCCCCHHHHHHcCchHHHHhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhcceeEeeccccCccccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhcCcCCcchhhhhhHHhhHHHHHHHHHhhhhhhhhccCchhHHHHHHHHHHHHHHHHHHhhccCCCCCCc
Q 041185 151 IFGSQIEAFQGHHRWPRTITRRQFANNLHALARVIAFTVLPFDLLCNDSTIHGFVCMLAGCIMFSQQFHAWAHSTKSKLP 230 (306)
Q Consensus 151 i~G~~Ir~FreHH~dP~aITrhdFieni~~la~~~~~~llpl~~l~~~~~~~~F~~~f~~~v~ltnQiHkWSHt~k~~lP 230 (306)
++|+++..|||||+|||+||||||+||.+.++.+..+.++|+++++.++.+++|+++|++||.|||||||||||| ++||
T Consensus 141 ~vG~~f~rfreHH~dP~tITr~~f~~~~~ll~~a~~f~v~~~d~~~q~~~~h~fV~~~~i~v~~tnQiHkWsHTy-~gLP 219 (293)
T KOG3011|consen 141 WVGRQFERFQEHHKDPWTITRRQFANNLHLLARAYTFIVLPLDLAFQDPVFHGFVFLFAICVLFTNQIHKWSHTY-SGLP 219 (293)
T ss_pred hhHHHHHHHHhccCCcceeeHHHHhhhhHHHHHhheeEecCHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHhhh-ccCc
Confidence 999983349999999999999999999999999999999999999999999999999999999999999999988 9999
Q ss_pred HHHHHHHHcCcccCchhhhccCCCCCCCceeeecccchHhhhhhhHHHHHHHHHHHhhcCCCCCCCCCCchhhhhC
Q 041185 231 PLVVALQDAGVLVSRSQHAAHHRPPYNNNYCIVSGVWNEFLDKQKVFEALEMILFFKLGVRPRSWSEPSSKWIEEA 306 (306)
Q Consensus 231 ~~V~~LQ~~gllLsrkhH~~HH~aPhet~YCIttGwlN~~Ld~i~fwr~LE~vI~~~TG~~PRaw~e~~~~w~e~~ 306 (306)
+||.+|||+||||||+||++||++|||+||||||||||++||+|||||+||++|+.+||++|| ||++||+||+
T Consensus 220 ~wVv~LQd~hlilpRkhH~iHH~aPh~~yyCI~tGw~N~~Le~~~f~~~~E~vi~~~tG~rPR---e~~~~w~~kl 292 (293)
T KOG3011|consen 220 PWVVLLQDMHLILPRKHHRIHHVAPHNTYYCIVSGWWNWVLDESNFFKAMEMVLYFQTGVRPR---EPNLKWAEKL 292 (293)
T ss_pred hHHHHHhhcceecccccccccccCccccceEEeechhhchHHHHHHHHHHHHHHHHhhCCCCC---CcchhhHhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999 8999999985
No 2
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=100.00 E-value=5.7e-77 Score=526.78 Aligned_cols=169 Identities=42% Similarity=0.684 Sum_probs=153.2
Q ss_pred HHHHHhhhceeeeeeecCCCCCCcccccccchhhhcCcCCcchhhhhhHHhhHHHHHHHHHhhh--hhhhhccCc-----
Q 041185 127 YVLADLGSGVYHWGIDNYGDESTPIFGSQIEAFQGHHRWPRTITRRQFANNLHALARVIAFTVL--PFDLLCNDS----- 199 (306)
Q Consensus 127 ~llADF~SGlvHW~~Dt~Gs~~tPi~G~~Ir~FreHH~dP~aITrhdFieni~~la~~~~~~ll--pl~~l~~~~----- 199 (306)
|++|||+||||||++|||||++|||+|++||+|||||+||++||||||+|+.++++...+..++ +..+...++
T Consensus 1 ~~~ADf~SGvvHW~~D~~Gs~~tpi~G~~I~~Fr~HH~~P~~itr~dfie~n~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 80 (178)
T PF10520_consen 1 YLLADFISGVVHWAADNWGSPDTPIIGKFIRPFREHHVDPTAITRHDFIETNGDNCLVSAPVLALMAAAFAWNSPSAIFY 80 (178)
T ss_pred CeeehhhcceeEEEeccCCCCccchhhHHhHHHHHcccCHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCChHhhhh
Confidence 6899999999999999999999999999999999999999999999999986665544443332 223333333
Q ss_pred --hhHHHHHHHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHcCcccCchhhhccCCCCCCCceeeecccchHhhhhhhHH
Q 041185 200 --TIHGFVCMLAGCIMFSQQFHAWAHSTKSKLPPLVVALQDAGVLVSRSQHAAHHRPPYNNNYCIVSGVWNEFLDKQKVF 277 (306)
Q Consensus 200 --~~~~F~~~f~~~v~ltnQiHkWSHt~k~~lP~~V~~LQ~~gllLsrkhH~~HH~aPhet~YCIttGwlN~~Ld~i~fw 277 (306)
++++|+++|+++++||||||||||++++ +|+||++|||+||||||+||++||++|||+||||||||+|++||+++||
T Consensus 81 ~~~~~~f~~~~~~~v~~tnq~HkWsH~~~~-~P~~V~~LQ~~gillsr~~H~~HH~aPh~~~YCI~tGw~N~~Ld~~~f~ 159 (178)
T PF10520_consen 81 AYGWHCFLFSFAFFVAFTNQFHKWSHTYKS-LPPWVRFLQDAGILLSRKHHRIHHVAPHDTNYCITTGWLNPPLDKIRFW 159 (178)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCHHHHHHHHCCcccCchhhhccccCcccCCeEeecccchHHHHHhhHH
Confidence 6789999999999999999999999976 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCC
Q 041185 278 EALEMILFFKLGVRPRSWS 296 (306)
Q Consensus 278 r~LE~vI~~~TG~~PRaw~ 296 (306)
|+||++|+.+||++||+||
T Consensus 160 ~~lE~~i~~~tG~~PR~~d 178 (178)
T PF10520_consen 160 RRLERVITFLTGVKPRADD 178 (178)
T ss_pred HHHHHHHHHHhCCCCCCCC
Confidence 9999999999999999986
No 3
>PLN02434 fatty acid hydroxylase
Probab=97.20 E-value=0.0053 Score=57.65 Aligned_cols=104 Identities=17% Similarity=0.184 Sum_probs=59.8
Q ss_pred cchhhhcCcCCcchhhhhhHHhh-HHHHHHHHHhhhhhhhhcc-CchhHHHHHHHHHHHHHHHHHHhhccCCCCCCcHHH
Q 041185 156 IEAFQGHHRWPRTITRRQFANNL-HALARVIAFTVLPFDLLCN-DSTIHGFVCMLAGCIMFSQQFHAWAHSTKSKLPPLV 233 (306)
Q Consensus 156 Ir~FreHH~dP~aITrhdFieni-~~la~~~~~~llpl~~l~~-~~~~~~F~~~f~~~v~ltnQiHkWSHt~k~~lP~~V 233 (306)
.+--..||.+|.+..|-=|==.. ..++.. +. ..+.++.. ......|.+. +++-.+=.-+|-..|..+ ..+++.
T Consensus 120 fllHg~HH~~P~D~~rLv~PP~~~~~l~~~--~~-~l~~~~~~~~~a~~~~~G~-l~gYl~Yd~~Hy~lH~~~-p~~~~~ 194 (237)
T PLN02434 120 YLLHGCHHKHPMDGLRLVFPPAATAILCVP--FW-NLIALFATPATAPALFGGG-LLGYVMYDCTHYFLHHGQ-PSTDVL 194 (237)
T ss_pred HHHHHHhhcCCCCCCCeecCcHHHHHHHHH--HH-HHHHHHcchhHHHHHHHHH-HHHHHHHHHHHHHHHhcC-cchHHH
Confidence 34567899999987774221110 001111 11 11111111 1122223332 333345566799999873 446777
Q ss_pred HHHHHcCcccCchhhhccCCCCCCCceeeecccchHhhh
Q 041185 234 VALQDAGVLVSRSQHAAHHRPPYNNNYCIVSGVWNEFLD 272 (306)
Q Consensus 234 ~~LQ~~gllLsrkhH~~HH~aPhet~YCIttGwlN~~Ld 272 (306)
+.|. ++|..||-...|.+|-|||.+||.++.
T Consensus 195 r~lk--------r~H~~HHfk~~~~~fGVTs~~wD~vFG 225 (237)
T PLN02434 195 RNLK--------KYHLNHHFRDQDKGFGITSSLWDRVFG 225 (237)
T ss_pred HHHH--------HHHHHHcCCCCCCCCCcCchHHHHhcC
Confidence 7664 679999999999999999988877653
No 4
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=94.81 E-value=0.11 Score=48.69 Aligned_cols=128 Identities=20% Similarity=0.241 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHhhhceeeeeeecCCCCCCcccccccchh-hhcCcCC----cchhhhhhHHhhHHHHHHHHHhhhhhhh
Q 041185 120 MLAGYIGYVLADLGSGVYHWGIDNYGDESTPIFGSQIEAF-QGHHRWP----RTITRRQFANNLHALARVIAFTVLPFDL 194 (306)
Q Consensus 120 i~a~~~g~llADF~SGlvHW~~Dt~Gs~~tPi~G~~Ir~F-reHH~dP----~aITrhdFieni~~la~~~~~~llpl~~ 194 (306)
+++.+++.++.|+.==..|... --++..+.| +-||..+ .+-.|-...|.+ ....+..+|+.+
T Consensus 96 ~l~~~~~~~~~D~~~Y~~HR~~---------H~~~~~w~~H~~HH~~~~~~~~t~~~~hp~e~l----l~~~~~~~~~~l 162 (271)
T COG3000 96 ALQLLLAFLFLDLGYYWAHRLL---------HRVPLLWAFHKVHHSSEVPDPLTALRFHPLEIL----LLAFLGLLPLLL 162 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------hhhHHHHHHHHhhcCcccCCchhhhhcChHHHH----HHHHHHHHHHHH
Confidence 5678899999998765555432 223345544 4577644 333344444431 111223334443
Q ss_pred hccCchhHHHHHHHHHHHHHHHHHHhhccCCCCC---CcHHHHHHHHcCcccCchhhhccCCCC-CCCceeeecccchHh
Q 041185 195 LCNDSTIHGFVCMLAGCIMFSQQFHAWAHSTKSK---LPPLVVALQDAGVLVSRSQHAAHHRPP-YNNNYCIVSGVWNEF 270 (306)
Q Consensus 195 l~~~~~~~~F~~~f~~~v~ltnQiHkWSHt~k~~---lP~~V~~LQ~~gllLsrkhH~~HH~aP-het~YCIttGwlN~~ 270 (306)
+...+...+....+. +-.=-|.|.. .. .+.+.+. ++.++++|+.||..- +|+||..+.-+||.+
T Consensus 163 ~~~~~~~~~~~~~~~------~~~~~~~H~~-~~~~~~~~~~~~-----v~~~p~~H~lHH~~~~~~~Nyg~~~~~WDrl 230 (271)
T COG3000 163 LGLSPVAVALLFIFL------LFWAVLIHSN-LDLPLPLGWLRY-----VFNTPRHHRLHHSKDPYDKNYGVTLTFWDRL 230 (271)
T ss_pred hcCCHHHHHHHHHHH------HHHHHHHhcC-ccccCCccccee-----eecCchHHHHhccCCCCCCcchhhhHHHHHH
Confidence 332332222212222 1122244554 22 2233332 788999999999987 889999888888887
Q ss_pred hh
Q 041185 271 LD 272 (306)
Q Consensus 271 Ld 272 (306)
+.
T Consensus 231 FG 232 (271)
T COG3000 231 FG 232 (271)
T ss_pred cc
Confidence 76
No 5
>PLN02869 fatty aldehyde decarbonylase
Probab=93.47 E-value=0.12 Score=54.52 Aligned_cols=43 Identities=19% Similarity=0.344 Sum_probs=33.3
Q ss_pred cccCchhhhccCCCCCCCceeeecccchHhhhhh--hHHHHHHHHH
Q 041185 241 VLVSRSQHAAHHRPPYNNNYCIVSGVWNEFLDKQ--KVFEALEMIL 284 (306)
Q Consensus 241 llLsrkhH~~HH~aPhet~YCIttGwlN~~Ld~i--~fwr~LE~vI 284 (306)
++..+.+|..||.. +++|||....|||++..-. +-+..-|+..
T Consensus 241 ll~TPsfHdlHHs~-fd~NYGlfF~~WDrLFGT~d~~s~~l~e~~~ 285 (620)
T PLN02869 241 LMYTPSYHSLHHTQ-FRTNYSLFMPIYDYIYGTMDKSSDTLYEKSL 285 (620)
T ss_pred eecCchHHhHHhcc-CCcCcccchHHHHhccCCCCCCchhHHHHhh
Confidence 46789999999998 9999999999999887632 3344445444
No 6
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=73.33 E-value=7.1 Score=29.34 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=19.8
Q ss_pred CCCcccccccchhhhcCcCCcchhhhhhHHh
Q 041185 147 ESTPIFGSQIEAFQGHHRWPRTITRRQFANN 177 (306)
Q Consensus 147 ~~tPi~G~~Ir~FreHH~dP~aITrhdFien 177 (306)
.++|++|+.|++||||-. |||+.=+-.
T Consensus 6 ~~h~~~g~~I~~w~~~r~----i~~k~K~~a 32 (71)
T PF04304_consen 6 LNHRLFGPYIRNWEEHRG----IPRKAKIRA 32 (71)
T ss_pred HcCchhHHHHHHHHHCCC----cCHHHHHHH
Confidence 367999999999999864 555554443
No 7
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=60.68 E-value=29 Score=26.89 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=14.0
Q ss_pred HHHHHHHHhhhceeeeeee
Q 041185 124 YIGYVLADLGSGVYHWGID 142 (306)
Q Consensus 124 ~~g~llADF~SGlvHW~~D 142 (306)
++++++.||.-=++|...=
T Consensus 2 ~~~~l~~d~~~Y~~HRl~H 20 (114)
T PF04116_consen 2 LLGFLLWDFWEYWMHRLLH 20 (114)
T ss_pred eeeHHHHHHHHHHHHHHHh
Confidence 3577888888888887555
No 8
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism]
Probab=50.08 E-value=13 Score=39.53 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=26.6
Q ss_pred hhhHHHHHHHHHH-HHHHHhhhceeeeeeecC
Q 041185 114 HIWLEPMLAGYIG-YVLADLGSGVYHWGIDNY 144 (306)
Q Consensus 114 ~~wl~~i~a~~~g-~llADF~SGlvHW~~Dt~ 144 (306)
..|..++++.++| |+.|.++.+++++.+|++
T Consensus 504 ~~y~V~lla~iig~ylIa~~f~~v~~m~Vdtl 535 (577)
T KOG1362|consen 504 YYYVVPLLAFIIGAYLIAHIFFSVLEMCVDTL 535 (577)
T ss_pred eeEeHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444577888888 999999999999999998
No 9
>PLN02220 delta-9 acyl-lipid desaturase
Probab=43.93 E-value=32 Score=33.57 Aligned_cols=47 Identities=23% Similarity=0.338 Sum_probs=32.0
Q ss_pred HHHHHHHHh-hccCCCCCCcHHHHHHH-HcCccc---Cc----hhhhccCC------CCCCCc
Q 041185 212 IMFSQQFHA-WAHSTKSKLPPLVVALQ-DAGVLV---SR----SQHAAHHR------PPYNNN 259 (306)
Q Consensus 212 v~ltnQiHk-WSHt~k~~lP~~V~~LQ-~~gllL---sr----khH~~HH~------aPhet~ 259 (306)
...|--.|+ |||.. ++.|++++++= =+|.+. |+ +.||.||. .||+-+
T Consensus 70 lGiT~GyHRl~sHrs-fka~~~l~~~la~~g~~a~Qgs~~~Wv~~HR~HH~~sDt~~DPHsp~ 131 (299)
T PLN02220 70 LSITFSYHRNLAHRS-FKLPKWLEYPFAYSALFALQGDPIDWVSTHRFHHQFTDSDRDPHSPI 131 (299)
T ss_pred HHHHHHHHHHHHhhc-CcCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCccccc
Confidence 456777787 89999 89999997643 233322 22 68999997 466554
No 10
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=35.54 E-value=29 Score=34.59 Aligned_cols=46 Identities=24% Similarity=0.491 Sum_probs=29.7
Q ss_pred HHHHHHHh-hccCCCCCCcHHHHHH-HHcCcc------cC-chhhhccCC------CCCCCc
Q 041185 213 MFSQQFHA-WAHSTKSKLPPLVVAL-QDAGVL------VS-RSQHAAHHR------PPYNNN 259 (306)
Q Consensus 213 ~ltnQiHk-WSHt~k~~lP~~V~~L-Q~~gll------Ls-rkhH~~HH~------aPhet~ 259 (306)
..|--.|+ |||.. ++.|.+.+.. .=++.+ .. -+.||.||+ .||+..
T Consensus 82 gITag~HRlwsHRS-yKa~kpLr~fla~~~~~A~Qg~~~~WvrdHR~HHk~tdTD~DPhn~~ 142 (321)
T KOG1600|consen 82 GITAGYHRLWSHRS-YKAPKPLRYFLAYCNTLAFQGDIIDWVRDHRVHHKFTDTDADPHNPR 142 (321)
T ss_pred eeeeehhhhccccc-ccCCccHHHHHHHHHHHhccCChhHHHhhhhhhccccccCCCCCCcc
Confidence 45667786 99998 7888887743 222222 12 257999996 466654
No 11
>COG2832 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.73 E-value=20 Score=31.09 Aligned_cols=59 Identities=20% Similarity=0.245 Sum_probs=39.8
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhceeeeeeecCCCCCCcccccccchhhhcCcCCc
Q 041185 102 SLAKSIAAAASSHIWLEPMLAGYIGYVLADLGSGVYHWGIDNYGDESTPIFGSQIEAFQGHHRWPR 167 (306)
Q Consensus 102 ~l~~~~~~~~~~~~wl~~i~a~~~g~llADF~SGlvHW~~Dt~Gs~~tPi~G~~Ir~FreHH~dP~ 167 (306)
+++-.+.|.+.....-.|.+ +++++..|-=-=-+.||..+ .|.+|+-++.||||..-|.
T Consensus 13 ~l~LGIiGifLPlLPTTPFl-LLaa~cFaRsSpRf~~WLl~------~~~fg~~v~~~~e~~ai~~ 71 (119)
T COG2832 13 SLALGIIGIFLPLLPTTPFL-LLAAACFARSSPRFHAWLLR------HKYFGPYVRDWREGGAIPR 71 (119)
T ss_pred HHHHHHHHhcCcccCCcHHH-HHHHHHHHcCCcHHHHHHHc------CchhhHHHHHHHHcCCCCh
Confidence 34555566666666655544 45566666544456667654 5899999999999987766
No 12
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=31.53 E-value=62 Score=29.36 Aligned_cols=43 Identities=30% Similarity=0.483 Sum_probs=28.7
Q ss_pred HHHHHHHHHh-hccCCCCCCcHHHHHHHH-cCcc---cCc----hhhhccCCC
Q 041185 211 CIMFSQQFHA-WAHSTKSKLPPLVVALQD-AGVL---VSR----SQHAAHHRP 254 (306)
Q Consensus 211 ~v~ltnQiHk-WSHt~k~~lP~~V~~LQ~-~gll---Lsr----khH~~HH~a 254 (306)
+...|--.|+ |||.. ++.+++++.+=. +|.+ -|+ +.||.||..
T Consensus 16 ~lgit~G~HRl~aHrs-fk~~~~l~~~l~~~g~~a~qgs~~~W~~~HR~HH~~ 67 (178)
T cd03505 16 GLGITAGYHRLWAHRS-FKAPKPLRIFLAILGSLAGQGSPLWWVADHRLHHRY 67 (178)
T ss_pred HHHHHHHHHHHHhhcc-CcCcHHHHHHHHHHHHHHcCcCHHHHHHHHHHhhcc
Confidence 3455777787 89998 888888876432 2222 233 589999963
No 13
>PF06612 DUF1146: Protein of unknown function (DUF1146); InterPro: IPR009526 Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes YwzB from Bacillus subtilis.
Probab=29.57 E-value=54 Score=23.92 Aligned_cols=15 Identities=20% Similarity=0.414 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhh
Q 041185 119 PMLAGYIGYVLADLG 133 (306)
Q Consensus 119 ~i~a~~~g~llADF~ 133 (306)
+++|+.+||+.|.|+
T Consensus 33 vllsIalGylvs~Ff 47 (48)
T PF06612_consen 33 VLLSIALGYLVSSFF 47 (48)
T ss_pred HHHHHHHHHHHHhhc
Confidence 467899999999985
No 14
>TIGR00680 kdpA K+-transporting ATPase, KdpA. Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilize the complex [PubMed:9858692]. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolyzing (energy providing) subunit PubMed:9858692].
Probab=27.73 E-value=43 Score=35.71 Aligned_cols=25 Identities=28% Similarity=0.587 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCchhhh
Q 041185 276 VFEALEMILFFKLGVRPRSWSEPSSKWIE 304 (306)
Q Consensus 276 fwr~LE~vI~~~TG~~PRaw~e~~~~w~e 304 (306)
+++.+|+.+|++.|+.|+ .+++|++
T Consensus 41 ~~~pvE~~iyr~~Gvd~~----~em~Wk~ 65 (563)
T TIGR00680 41 IAGPLERVIFAGSGVTKH----PEMGWTQ 65 (563)
T ss_pred hhhhHHHHHHHHHCCCCc----ccCCHHH
Confidence 445799999999999996 5788876
No 15
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=27.04 E-value=1.2e+02 Score=21.61 Aligned_cols=12 Identities=33% Similarity=0.814 Sum_probs=8.4
Q ss_pred HHHHHhhHHHHH
Q 041185 89 RAWVATGCSTVL 100 (306)
Q Consensus 89 R~wv~~~~~~i~ 100 (306)
|.|.+.+.+||+
T Consensus 14 r~Wi~F~l~mi~ 25 (38)
T PF09125_consen 14 RGWIAFALAMIL 25 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhHHHHHHHHHH
Confidence 677777777665
No 16
>COG2060 KdpA K+-transporting ATPase, A chain [Inorganic ion transport and metabolism]
Probab=25.81 E-value=45 Score=35.39 Aligned_cols=25 Identities=28% Similarity=0.672 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCchhhh
Q 041185 276 VFEALEMILFFKLGVRPRSWSEPSSKWIE 304 (306)
Q Consensus 276 fwr~LE~vI~~~TG~~PRaw~e~~~~w~e 304 (306)
.++.+|+++|+.-|+.|| .+++|.+
T Consensus 40 v~~pvE~~~y~~~Gv~p~----~em~wk~ 64 (560)
T COG2060 40 VLGPVERLIYRLIGVDPR----HEMSWKQ 64 (560)
T ss_pred hhhHHHHHHHHhhcCCcc----ccCCHHH
Confidence 567899999999999999 4788875
No 17
>PRK00972 tetrahydromethanopterin S-methyltransferase subunit E; Provisional
Probab=25.43 E-value=66 Score=31.60 Aligned_cols=76 Identities=26% Similarity=0.392 Sum_probs=41.5
Q ss_pred ccCCCCCCCCC-cceecccccCCCCCccccccCCCCCCCCCcccchhhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhHH
Q 041185 40 STNLKPGSNPN-QLVIEPRLALSSTTSTTTAAKSSPPLLNDPALQSTWAHRAWVATGCSTVLVSLAKSIAAAASSHIWLE 118 (306)
Q Consensus 40 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~st~~~R~wv~~~~~~i~~~l~~~~~~~~~~~~wl~ 118 (306)
-+|--+|+||| |+-.-|+.-++ -. .+|..-=-+-..+-+||+.+.+.-.+-+ ..-+.
T Consensus 28 ESDvGSQSNPNSQVQLAPQmg~~----HR--------~fNKAiSGEP~aygl~~ai~g~vA~~lm----------~~~~~ 85 (292)
T PRK00972 28 ESDVGSQSNPNSQVQLAPQMGNI----HR--------IFNKAISGEPVAYGLWCAIAGAVAWALM----------AFGLN 85 (292)
T ss_pred hhccccCCCCcchhhhchhcCcH----HH--------HhhhhccCCCchhHHHHHHHHHHHHHHH----------HcCcc
Confidence 35678899999 88777876663 00 1111111122234566644433211111 11123
Q ss_pred HHHHHHHHHHHHHhhhcee
Q 041185 119 PMLAGYIGYVLADLGSGVY 137 (306)
Q Consensus 119 ~i~a~~~g~llADF~SGlv 137 (306)
+++|+.+|-.+|-|.-|+|
T Consensus 86 ~vlAi~~Ga~vaa~vhg~y 104 (292)
T PRK00972 86 PVLAIIVGAGVAALVHGVY 104 (292)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667888888888888876
No 18
>KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism]
Probab=24.71 E-value=98 Score=29.70 Aligned_cols=60 Identities=23% Similarity=0.387 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCc-HHHHHHHHcCcccCchhhhccCCCCCCCceeeecccchHhhh
Q 041185 203 GFVCMLAGCIMFSQQFHAWAHSTKSKLP-PLVVALQDAGVLVSRSQHAAHHRPPYNNNYCIVSGVWNEFLD 272 (306)
Q Consensus 203 ~F~~~f~~~v~ltnQiHkWSHt~k~~lP-~~V~~LQ~~gllLsrkhH~~HH~aPhet~YCIttGwlN~~Ld 272 (306)
.|.+.++.+ .+=..-|.+-|-.+ ..+ +..+-|. +.|..||-.-++.-|-|+|-.||++..
T Consensus 168 ~faG~l~GY-V~YDmtHYyLHhg~-p~~~~~~~~lK--------~yHl~HHfk~q~~GfGItS~lWD~VFg 228 (240)
T KOG0539|consen 168 GFAGGLLGY-VCYDMTHYYLHHGS-PPKRPYLKHLK--------KYHLNHHFKHQDLGFGITSSLWDYVFG 228 (240)
T ss_pred hhccchhhh-hhhhhhhhhhhcCC-CCCchHHHHHH--------HHHhhhhhhccccCccccHHHHHHHhc
Confidence 444444433 34566799988773 212 5555554 467799999999999999999887654
No 19
>KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism]
Probab=24.27 E-value=22 Score=35.07 Aligned_cols=58 Identities=12% Similarity=0.307 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHcCcccCchhhhccCCCCCCCceeeecccchHhhhh
Q 041185 203 GFVCMLAGCIMFSQQFHAWAHSTKSKLPPLVVALQDAGVLVSRSQHAAHHRPPYNNNYCIVSGVWNEFLDK 273 (306)
Q Consensus 203 ~F~~~f~~~v~ltnQiHkWSHt~k~~lP~~V~~LQ~~gllLsrkhH~~HH~aPhet~YCIttGwlN~~Ld~ 273 (306)
.|+.++.+-...|--||-=-|.. ..=.+-...||.+||.- +|.||--.|=|||++-..
T Consensus 202 t~L~l~~f~~iwt~~IHd~~~~~------------l~~~ingaahHtvHH~~-f~~NYG~~tilwDrmfgS 259 (312)
T KOG0872|consen 202 TYLSLFTFVNIWTISIHDGIYGS------------LNPPINGAAHHTVHHTY-FDYNYGQYTILWDRMFGS 259 (312)
T ss_pred HHHHHHHHHHhHheeeecccccc------------ccCccccccccceeeee-EecCCCcEEEeHHhccCc
Confidence 34544444344455555544433 12246678899999999 999999999999987653
No 20
>PF04206 MtrE: Tetrahydromethanopterin S-methyltransferase, subunit E ; InterPro: IPR005780 This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0006814 sodium ion transport, 0005737 cytoplasm, 0012506 vesicle membrane
Probab=23.61 E-value=92 Score=30.32 Aligned_cols=78 Identities=28% Similarity=0.389 Sum_probs=42.3
Q ss_pred cccCCCCCCCCC-cceecccccCCCCCccccccCCCCCCCCCcccchhhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhH
Q 041185 39 SSTNLKPGSNPN-QLVIEPRLALSSTTSTTTAAKSSPPLLNDPALQSTWAHRAWVATGCSTVLVSLAKSIAAAASSHIWL 117 (306)
Q Consensus 39 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~st~~~R~wv~~~~~~i~~~l~~~~~~~~~~~~wl 117 (306)
.-+|.-+|+||| |+-.-|+.-++ -. .+|..-=-+-..+-+|++.+.+. +-.+.. ..-+
T Consensus 20 lESDvGSQsNPNSQVQLAPQmg~~----HR--------~fNKAiSGEP~aygl~~ai~g~i-----A~~lm~----~~~~ 78 (269)
T PF04206_consen 20 LESDVGSQSNPNSQVQLAPQMGNI----HR--------IFNKAISGEPPAYGLWCAIAGAI-----AWALMS----AFGL 78 (269)
T ss_pred hhhccccCCCCcchhhcchhcCcH----HH--------HHhhhccCCCchhhHHHHHHHHH-----HHHHHH----HcCc
Confidence 345678899999 88778877663 00 11111111122345666433322 111111 1113
Q ss_pred HHHHHHHHHHHHHHhhhcee
Q 041185 118 EPMLAGYIGYVLADLGSGVY 137 (306)
Q Consensus 118 ~~i~a~~~g~llADF~SGlv 137 (306)
.+++|+.+|-.+|-|.-|+|
T Consensus 79 ~~i~ai~~Ga~vAa~v~g~y 98 (269)
T PF04206_consen 79 NPILAIAIGAAVAALVHGVY 98 (269)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 35678888999999888876
No 21
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=23.20 E-value=1.6e+02 Score=28.40 Aligned_cols=39 Identities=21% Similarity=0.156 Sum_probs=25.5
Q ss_pred HHhhccCCCCCCcHHHHHHHHc-Ccc------cC-chhhhccCCCCC
Q 041185 218 FHAWAHSTKSKLPPLVVALQDA-GVL------VS-RSQHAAHHRPPY 256 (306)
Q Consensus 218 iHkWSHt~k~~lP~~V~~LQ~~-gll------Ls-rkhH~~HH~aPh 256 (306)
.|--+|..-++.+.+=+++... ++. .+ |.+|..||..+=
T Consensus 63 ~Hd~~H~~~f~~~~~N~~~g~~~~~~~g~p~~~~~r~~H~~HH~~~n 109 (289)
T cd03508 63 IHEISHNLAFGKPLWNRLFGIFANLPIGVPYSISFKKYHLEHHRYLG 109 (289)
T ss_pred HHHhHHHhhcCChHHHHHHHHHHHHHhcCChhhHHHHHHHHhccCCC
Confidence 4999999866666665555432 221 12 568999999853
No 22
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=23.06 E-value=1.3e+02 Score=23.45 Aligned_cols=45 Identities=20% Similarity=0.024 Sum_probs=30.4
Q ss_pred HHHHHHHhhccCCCCCCcHHHHHHHHcC-------cccCchhhhccCCCCCC
Q 041185 213 MFSQQFHAWAHSTKSKLPPLVVALQDAG-------VLVSRSQHAAHHRPPYN 257 (306)
Q Consensus 213 ~ltnQiHkWSHt~k~~lP~~V~~LQ~~g-------llLsrkhH~~HH~aPhe 257 (306)
.+..-.|.=+|..-++.+.+-++++..- ...=+..|..||+.+-.
T Consensus 14 ~~~~~~H~~~H~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~H~~HH~~~~~ 65 (122)
T cd01060 14 GLTVLAHELGHRSFFRSRWLNRLLGALLGLALGGSYGWWRRSHRRHHRYTNT 65 (122)
T ss_pred HHHHHHHHHhhhhhhccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCcCC
Confidence 6667779999998666777777776541 11223688889987544
No 23
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=21.83 E-value=1.9e+02 Score=26.87 Aligned_cols=41 Identities=29% Similarity=0.297 Sum_probs=24.9
Q ss_pred HHHHHhhccCCCCCCcHHHHHHHHc---CcccC----chhhhccCCCC
Q 041185 215 SQQFHAWAHSTKSKLPPLVVALQDA---GVLVS----RSQHAAHHRPP 255 (306)
Q Consensus 215 tnQiHkWSHt~k~~lP~~V~~LQ~~---gllLs----rkhH~~HH~aP 255 (306)
-.-.|--+|..-++.+.+=+++... -+..| +..|..||+.+
T Consensus 59 ~~~~He~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~~~~~H~~HH~~~ 106 (285)
T cd03511 59 FARWHECVHGTAFATRWLNDAVGQIAGLMILLPPDFFRWSHARHHRYT 106 (285)
T ss_pred HHHHHHhhcccccCCchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCc
Confidence 3446999999866655544444321 11222 56788999886
No 24
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=21.80 E-value=1.2e+02 Score=29.12 Aligned_cols=49 Identities=12% Similarity=0.203 Sum_probs=22.7
Q ss_pred CCCcccchhhhHHHHHHhhHHHHH-HHHHHHHHHhhhhhhhHHHHHHHHHH
Q 041185 77 LNDPALQSTWAHRAWVATGCSTVL-VSLAKSIAAAASSHIWLEPMLAGYIG 126 (306)
Q Consensus 77 ~~~~~l~st~~~R~wv~~~~~~i~-~~l~~~~~~~~~~~~wl~~i~a~~~g 126 (306)
.+.|+++.-...+-++.....++. +.++.+. .......|+.+++|+++|
T Consensus 3 ~~~pei~~L~~~~~~~~~~~~~~v~~~~~~~~-~l~~~sw~~~ll~a~vi~ 52 (289)
T cd03508 3 AKYPEIKKLFGPDPLTKWVVLGVVLLQIITAY-LLRDSSWWKILLVAYFFG 52 (289)
T ss_pred ccchHHHHhcCCCcchHHHHHHHHHHHHHHHH-HHhcCcHHHHHHHHHHHH
Confidence 356777777666655543333333 2233222 222334554444444443
No 25
>PHA00027 lys lysis protein
Probab=21.61 E-value=25 Score=26.88 Aligned_cols=20 Identities=15% Similarity=0.117 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhhceeeeeee
Q 041185 123 GYIGYVLADLGSGVYHWGID 142 (306)
Q Consensus 123 ~~~g~llADF~SGlvHW~~D 142 (306)
|+++++++||-+-+.||..|
T Consensus 25 I~LAIfLS~FTn~~l~sil~ 44 (58)
T PHA00027 25 IALAIFLSDFTNIFLHSILE 44 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44667777777777776543
No 26
>PF11125 DUF2830: Protein of unknown function (DUF2830); InterPro: IPR022599 This entry represents putative lysis proteins from Bacteriophage MS2 and Bacteriophage BZ13. The bacteriophage MS2 lysin protein COM1L5 from SWISSPROT was identified as an overlapping cistron in the bacteriophage MS2 RNA [].
Probab=21.59 E-value=25 Score=26.51 Aligned_cols=20 Identities=10% Similarity=0.016 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhhceeeeeee
Q 041185 123 GYIGYVLADLGSGVYHWGID 142 (306)
Q Consensus 123 ~~~g~llADF~SGlvHW~~D 142 (306)
+++++++.||-+-+.||..|
T Consensus 21 I~LAI~LS~FTn~~~~~l~~ 40 (54)
T PF11125_consen 21 IALAIFLSKFTNQLLHSLWG 40 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677788888887777543
No 27
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=21.31 E-value=1.4e+02 Score=25.28 Aligned_cols=44 Identities=20% Similarity=0.010 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhccCCCCCCcHHHHHHHHcCccc---C----chhhhccCCC
Q 041185 211 CIMFSQQFHAWAHSTKSKLPPLVVALQDAGVLV---S----RSQHAAHHRP 254 (306)
Q Consensus 211 ~v~ltnQiHkWSHt~k~~lP~~V~~LQ~~gllL---s----rkhH~~HH~a 254 (306)
+..+....|--+|..-++.+.+=+++.....++ | |..|..||..
T Consensus 17 ~~~~~~~~H~~~H~~~~~~~~~n~~l~~~~~~~~~~~~~~wr~~H~~HH~~ 67 (257)
T PF00487_consen 17 FARLFGLAHDAGHGAFFRSRWLNDLLGRLLGLPIGGPYSSWRISHNRHHHY 67 (257)
T ss_pred HHHHHHHHHHHhccCCcccChHHHHHHHHHHHHhcCCHhHhheeeeccccc
Confidence 445566679999997555555555554443322 1 6688888863
No 28
>PF14163 SieB: Superinfection exclusion protein B
Probab=20.67 E-value=1.3e+02 Score=25.73 Aligned_cols=54 Identities=20% Similarity=0.298 Sum_probs=32.1
Q ss_pred HHHHhhHHHHH---HHHHHHHHH---hhhhhhhHHHHHHHHHHHHHHHhhhceeeeeeec
Q 041185 90 AWVATGCSTVL---VSLAKSIAA---AASSHIWLEPMLAGYIGYVLADLGSGVYHWGIDN 143 (306)
Q Consensus 90 ~wv~~~~~~i~---~~l~~~~~~---~~~~~~wl~~i~a~~~g~llADF~SGlvHW~~Dt 143 (306)
.|+...|++++ .++.+.+.. ...-..|+.+++-+-++|+++++++-+++|+.|.
T Consensus 3 ~~l~i~~~~llf~P~~~~~~l~l~~~~~~y~~~i~~~fl~s~s~li~~~~~~~~~~~~~~ 62 (151)
T PF14163_consen 3 LWLIIFSGLLLFLPESLLEWLNLDKFEIKYQPWIGLIFLFSVSYLIAQLLSFIYKEAKDR 62 (151)
T ss_pred HHHHHHHHHHHHCCHHHHHHhCcchHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666 233332211 1233445544444557999999999997777665
No 29
>KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism]
Probab=20.35 E-value=51 Score=32.35 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=28.0
Q ss_pred chhhhccCCCCCCCceeeecccchHhhhhhhHHHH
Q 041185 245 RSQHAAHHRPPYNNNYCIVSGVWNEFLDKQKVFEA 279 (306)
Q Consensus 245 rkhH~~HH~aPhet~YCIttGwlN~~Ld~i~fwr~ 279 (306)
-++|--||... .+|||-+-||||+++.--+-+|+
T Consensus 229 a~~HD~HH~~f-~~n~~~~f~~~D~i~GTd~~~~~ 262 (283)
T KOG0873|consen 229 AEHHDYHHLVF-IGNFASVFGYLDRIHGTDSTYRA 262 (283)
T ss_pred Ccccchhhhhc-cccccchhHHHHHHhccCccHhh
Confidence 37899999995 99999999999999985444443
No 30
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=20.31 E-value=62 Score=34.46 Aligned_cols=24 Identities=33% Similarity=0.695 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCchhhh
Q 041185 277 FEALEMILFFKLGVRPRSWSEPSSKWIE 304 (306)
Q Consensus 277 wr~LE~vI~~~TG~~PRaw~e~~~~w~e 304 (306)
++.+|+.+|++.|+.|+ .+++|++
T Consensus 39 ~~~vE~~~yr~~gvd~~----~~m~wk~ 62 (559)
T PRK05482 39 LGPVERLLYRLLGVDPR----EEMSWKQ 62 (559)
T ss_pred cchHHHHHHHHhcCCCc----ccCCHHH
Confidence 55799999999999998 4788976
No 31
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=20.24 E-value=2e+02 Score=28.47 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=27.9
Q ss_pred HHHHHHHHh-hccCCCCCCcHHHHHHHHcCccc----Cc----hhhhccCCC
Q 041185 212 IMFSQQFHA-WAHSTKSKLPPLVVALQDAGVLV----SR----SQHAAHHRP 254 (306)
Q Consensus 212 v~ltnQiHk-WSHt~k~~lP~~V~~LQ~~gllL----sr----khH~~HH~a 254 (306)
+..|--+|+ |||.. ++.|++.++.=....-+ |. .-||+||+-
T Consensus 60 igIt~G~HRl~sHRa-~~~~k~Le~~la~~g~l~~~G~~~~W~~~HR~HHr~ 110 (289)
T COG1398 60 IGITLGLHRLWSHRA-FKAHKWLEYVLAFWGALTTQGPAIEWVGIHRKHHRK 110 (289)
T ss_pred ceeeeehhhhhhhhh-cccchHHHHHHHHHHHhhcCCCceeHHHHHHHhhcc
Confidence 355667797 89998 88999887543322211 22 369999974
No 32
>PF05106 Phage_holin_3: Phage holin family (Lysis protein S); InterPro: IPR006481 This entry is represented by the Bacteriophage lambda, GpS. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=20.13 E-value=68 Score=26.41 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=22.8
Q ss_pred HhhHHHHHHHHHH-HHHHhhhhhhhHHHHHHHHHHHHHHHhh
Q 041185 93 ATGCSTVLVSLAK-SIAAAASSHIWLEPMLAGYIGYVLADLG 133 (306)
Q Consensus 93 ~~~~~~i~~~l~~-~~~~~~~~~~wl~~i~a~~~g~llADF~ 133 (306)
.+...|++.++.+ .+.+...+...++-++..++++...|..
T Consensus 23 ~~a~lA~~mA~LR~~Y~g~~~~r~llea~lCg~lal~~~~~L 64 (100)
T PF05106_consen 23 YGALLAFVMALLRGAYGGGSWRRRLLEALLCGLLALFARSLL 64 (100)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444443 3344455666666666667777777765
Done!