Query 041185
Match_columns 306
No_of_seqs 98 out of 109
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 07:18:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041185.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041185hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p06_A Hypothetical protein AF 27.9 19 0.00066 28.9 1.1 42 246-297 4-55 (114)
2 3nk4_C ZONA pellucida 3; ferti 19.3 30 0.001 22.2 0.5 12 241-252 19-30 (30)
3 3tu8_A Burkholderia lethal fac 16.5 47 0.0016 28.9 1.3 14 267-280 106-119 (210)
4 1mm0_A Termicin; termite, cyte 15.5 30 0.001 23.4 -0.2 17 20-37 10-26 (36)
5 2fsu_A Protein PHNH; C-P lyase 15.2 47 0.0016 29.8 1.0 39 246-285 4-42 (210)
6 4ao9_A Beta-phenylalanine amin 13.7 2.2E+02 0.0076 27.4 5.3 51 232-295 404-454 (454)
7 1zch_A Hypothetical oxidoreduc 13.4 1.3E+02 0.0044 26.2 3.2 24 228-252 232-255 (255)
8 2pq4_B Periplasmic nitrate red 12.5 1.2E+02 0.0042 19.8 2.1 10 168-177 2-11 (35)
9 4esf_A PADR-like transcription 12.5 1.6E+02 0.0054 23.0 3.3 64 228-293 46-109 (117)
10 1q90_R Cytochrome B6-F complex 12.2 2.1E+02 0.007 20.2 3.4 31 166-196 6-38 (49)
No 1
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=27.85 E-value=19 Score=28.93 Aligned_cols=42 Identities=31% Similarity=0.499 Sum_probs=16.4
Q ss_pred hhhhccCCCCCCCceeeecccchHhhhhhhHHHHHHHHHHH----------hhcCCCCCCCC
Q 041185 246 SQHAAHHRPPYNNNYCIVSGVWNEFLDKQKVFEALEMILFF----------KLGVRPRSWSE 297 (306)
Q Consensus 246 khH~~HH~aPhet~YCIttGwlN~~Ld~i~fwr~LE~vI~~----------~TG~~PRaw~e 297 (306)
.||..||.+--++-| .....+||..|+.+.. .-|-.||.|-+
T Consensus 4 shhhhhhssgrenly----------fqgmdyfrlaekflremhakymkrvsrpgntprpwfd 55 (114)
T 2p06_A 4 SHHHHHHSSGRENLY----------FQGMDYFRLAEKFLREMHAKYMKRVSRPGNTPRPWFD 55 (114)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHHHHHHHHTSTTCCSCHHHH
T ss_pred ccccccccccccchh----------ccchhHHHHHHHHHHHHHHHHHHHccCCCCCCCCccc
Confidence 467677776444444 4455678888877654 34778887743
No 2
>3nk4_C ZONA pellucida 3; fertilization, oocyte, egg coat, vitelline E ZP domain, ZP module, egg-sperm interaction, species-specif recognition, speciation; HET: A2G FLC; 2.00A {Gallus gallus} PDB: 3nk3_C*
Probab=19.27 E-value=30 Score=22.17 Aligned_cols=12 Identities=50% Similarity=0.803 Sum_probs=8.6
Q ss_pred cccCchhhhccC
Q 041185 241 VLVSRSQHAAHH 252 (306)
Q Consensus 241 llLsrkhH~~HH 252 (306)
++||-.||..||
T Consensus 19 vllsadhhhhhh 30 (30)
T 3nk4_C 19 VLLSADHHHHHH 30 (30)
T ss_dssp EEBCSCTTCCCC
T ss_pred EEecccccccCC
Confidence 567878876665
No 3
>3tu8_A Burkholderia lethal factor 1 (BLF1); toxin, unknown function; 1.04A {Burkholderia pseudomallei} PDB: 3tua_A
Probab=16.51 E-value=47 Score=28.94 Aligned_cols=14 Identities=0% Similarity=0.221 Sum_probs=12.4
Q ss_pred chHhhhhhhHHHHH
Q 041185 267 WNEFLDKQKVFEAL 280 (306)
Q Consensus 267 lN~~Ld~i~fwr~L 280 (306)
.+.|.|.-.|||+|
T Consensus 106 idapveanqfwrrm 119 (210)
T 3tu8_A 106 IDAPVEANQFWRRM 119 (210)
T ss_dssp ECTTSCHHHHHHHH
T ss_pred EcCchhHhHHHHHh
Confidence 47889999999999
No 4
>1mm0_A Termicin; termite, cytein-rich, antimicrobial peptide, insect defensin, CSAB motif, antimicrobial protein; NMR {Pseudacanthotermes spiniger} SCOP: g.3.7.4
Probab=15.47 E-value=30 Score=23.40 Aligned_cols=17 Identities=41% Similarity=0.591 Sum_probs=14.1
Q ss_pred cccCCCcccceeEEEeee
Q 041185 20 TCQHQHRSHSVRVTTCSA 37 (306)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~ 37 (306)
+||++|.....| -.|-.
T Consensus 10 ~Cqa~h~iyFRR-AyCdg 26 (36)
T 1mm0_A 10 TCQAQHSIYFRR-AFCDR 26 (36)
T ss_dssp HHHHHSCTTEEE-EEEET
T ss_pred HHHHhhCeeeee-eeecC
Confidence 699999999999 66643
No 5
>2fsu_A Protein PHNH; C-P lyase, phosphonate metabolism, structural genomics montreal-kingston bacterial structural genomics initiative; HET: MSE; 1.70A {Escherichia coli} SCOP: c.67.2.1
Probab=15.21 E-value=47 Score=29.76 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=12.2
Q ss_pred hhhhccCCCCCCCceeeecccchHhhhhhhHHHHHHHHHH
Q 041185 246 SQHAAHHRPPYNNNYCIVSGVWNEFLDKQKVFEALEMILF 285 (306)
Q Consensus 246 khH~~HH~aPhet~YCIttGwlN~~Ld~i~fwr~LE~vI~ 285 (306)
.||..||-+ -...--+..|+-|++.|.-+.||++=+...
T Consensus 4 ~~~~~~~~~-~~~~~~l~~gF~dpv~daQ~~FR~lL~Ams 42 (210)
T 2fsu_A 4 SHHHHHHGS-GSMGMTLETAFMLPVQDAQHSFRRLLKAMS 42 (210)
T ss_dssp -------------------------CCHHHHHHHHHHHHH
T ss_pred cccccccCC-cccceecccccCCcHHHHHHHHHHHHHHhC
Confidence 356566655 455566778999999999999999865543
No 6
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=13.71 E-value=2.2e+02 Score=27.36 Aligned_cols=51 Identities=14% Similarity=0.080 Sum_probs=35.7
Q ss_pred HHHHHHHcCcccCchhhhccCCCCCCCceeeecccchHhhhhhhHHHHHHHHHHHhhcCCCCCC
Q 041185 232 LVVALQDAGVLVSRSQHAAHHRPPYNNNYCIVSGVWNEFLDKQKVFEALEMILFFKLGVRPRSW 295 (306)
Q Consensus 232 ~V~~LQ~~gllLsrkhH~~HH~aPhet~YCIttGwlN~~Ld~i~fwr~LE~vI~~~TG~~PRaw 295 (306)
+...|.+.||++.|.. +.++..-....=+|+ +-.++|+++.+..+..|||+
T Consensus 404 ~~~~ll~~Gv~~~p~~-----------~~~~s~~~T~~dId~--~l~al~~~l~~~~a~lPra~ 454 (454)
T 4ao9_A 404 LFFHLLNEDIYSSPRG-----------FVVLSLPLTDADIDR--YVAAIGSFIGGHGALLPRAN 454 (454)
T ss_dssp HHHHHHHTTEECCTTC-----------EEECCTTCCHHHHHH--HHHHHHHHHHHSGGGSCBCC
T ss_pred HHHHHHHCCEEEcCCC-----------CEEEeCCCCHHHHHH--HHHHHHHHHHhccccCCCCC
Confidence 4556778899987643 122222334555665 78899999999999999984
No 7
>1zch_A Hypothetical oxidoreductase YCND; nitroreductase, NADH-oxidase; HET: FMN; 1.85A {Bacillus subtilis} SCOP: d.90.1.1
Probab=13.42 E-value=1.3e+02 Score=26.17 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=16.1
Q ss_pred CCcHHHHHHHHcCcccCchhhhccC
Q 041185 228 KLPPLVVALQDAGVLVSRSQHAAHH 252 (306)
Q Consensus 228 ~lP~~V~~LQ~~gllLsrkhH~~HH 252 (306)
.+|....+|++.|+.+-+.|| .||
T Consensus 232 ~~~~~~~~l~~~gf~~~~~~~-~~~ 255 (255)
T 1zch_A 232 YYPHIREMLEKQGFKVEKHHH-HHH 255 (255)
T ss_dssp SCTTHHHHHHHTTCCCCC-------
T ss_pred ccHHHHHHHHHCCCCcccccc-cCC
Confidence 589999999999998766554 444
No 8
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=12.55 E-value=1.2e+02 Score=19.80 Aligned_cols=10 Identities=30% Similarity=0.693 Sum_probs=8.7
Q ss_pred chhhhhhHHh
Q 041185 168 TITRRQFANN 177 (306)
Q Consensus 168 aITrhdFien 177 (306)
.++||||+..
T Consensus 2 ~lsRR~FLK~ 11 (35)
T 2pq4_B 2 KLSRRSFMKA 11 (35)
T ss_dssp CCCSHHHHHH
T ss_pred CCcHHHHHHH
Confidence 5899999986
No 9
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=12.48 E-value=1.6e+02 Score=23.03 Aligned_cols=64 Identities=11% Similarity=0.077 Sum_probs=44.6
Q ss_pred CCcHHHHHHHHcCcccCchhhhccCCCCCCCceeeecccchHhhhhhhHHHHHHHHHHHhhcCCCC
Q 041185 228 KLPPLVVALQDAGVLVSRSQHAAHHRPPYNNNYCIVSGVWNEFLDKQKVFEALEMILFFKLGVRPR 293 (306)
Q Consensus 228 ~lP~~V~~LQ~~gllLsrkhH~~HH~aPhet~YCIttGwlN~~Ld~i~fwr~LE~vI~~~TG~~PR 293 (306)
.+=+.++.|.+.|+|-+...-. ...|--++|.||--=-..+-+...-|..+...|....|...|
T Consensus 46 tlY~~L~rLe~~GlI~~~~~~~--~~g~~rk~Y~LT~~G~~~l~~~~~~~~~~~~~i~~il~~~~~ 109 (117)
T 4esf_A 46 TVYTILVRLEKKKLVNIEKKPS--DMGPPRKFYSLNEAGRQELELFWKKWDFVSSKINVLKSSNSR 109 (117)
T ss_dssp HHHHHHHHHHHTTCEEEEEEC-------CEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHCCCEEEEeecC--CCCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 3667889999999998875421 123556789998743455566677899999999999987766
No 10
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=12.23 E-value=2.1e+02 Score=20.16 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=18.6
Q ss_pred CcchhhhhhHHhh--HHHHHHHHHhhhhhhhhc
Q 041185 166 PRTITRRQFANNL--HALARVIAFTVLPFDLLC 196 (306)
Q Consensus 166 P~aITrhdFieni--~~la~~~~~~llpl~~l~ 196 (306)
.-.+.||+|.|.+ ...+..+...+.|...++
T Consensus 6 ~pdm~RRqfln~l~~G~~a~~a~~~~~P~v~ff 38 (49)
T 1q90_R 6 VPDMNKRNIMNLILAGGAGLPITTLALGYGAFF 38 (49)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence 4568999999973 334444444455554333
Done!