Query 041185
Match_columns 306
No_of_seqs 98 out of 109
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 07:18:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041185.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041185hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a73a_ d.4.1.3 (A:) Intron-en 36.9 2 0.00015 34.8 -1.4 38 9-60 81-118 (162)
2 d1mm0a_ g.3.7.4 (A:) Antimicro 29.7 4.8 0.00035 25.6 -0.2 16 20-36 10-25 (36)
3 d1imta2 g.3.10.1 (A:37-80) Int 15.4 31 0.0022 22.6 1.5 18 145-167 8-25 (44)
4 d1z7aa1 c.6.2.6 (A:4-304) Hypo 8.3 1.7E+02 0.012 24.5 4.5 58 229-298 106-163 (301)
5 d1nera_ a.35.1.2 (A:) Ner {Bac 7.9 61 0.0045 23.1 1.1 24 267-292 39-62 (74)
6 d1udza_ b.51.1.1 (A:) Isoleucy 7.9 20 0.0014 28.4 -1.9 16 125-140 104-119 (179)
7 d1cxqa_ c.55.3.2 (A:) Retrovir 7.9 93 0.0067 22.4 2.2 58 231-304 79-136 (147)
8 d1e6ya1 a.89.1.1 (A:1284-1569) 7.1 1.5E+02 0.011 25.7 3.5 33 86-118 135-167 (286)
9 d1ffya2 b.51.1.1 (A:201-394) I 6.7 17 0.0013 28.7 -2.8 16 125-140 112-127 (194)
10 d2iw0a1 c.6.2.3 (A:29-248) Chi 6.3 2.4E+02 0.018 21.6 4.3 52 230-293 60-111 (220)
No 1
>d1a73a_ d.4.1.3 (A:) Intron-encoded homing endonuclease I-PpoI {Physarum polycephalum [TaxId: 5791]}
Probab=36.88 E-value=2 Score=34.79 Aligned_cols=38 Identities=29% Similarity=0.360 Sum_probs=29.7
Q ss_pred CCCCCCCCCCCcccCCCcccceeEEEeeeecccCCCCCCCCCcceecccccC
Q 041185 9 YPLKSLLHPVPTCQHQHRSHSVRVTTCSATSSTNLKPGSNPNQLVIEPRLAL 60 (306)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (306)
+++.|-+-..+||+-||+-|+.| | -||+-|++|++.+|
T Consensus 81 fllepdning~t~tvSHLCHNg~---C-----------~NP~HLvvE~~~vN 118 (162)
T d1a73a_ 81 FLLEPDNINGKTCTASHLCHNTR---C-----------HNPLHLCWESLDDN 118 (162)
T ss_dssp GTTSCSEETTEEEEEEETTCCTT---B-----------CCGGGEEEEEHHHH
T ss_pred eEeCcccCCCceeEEEeeecCCc---c-----------cCcceEEEeechhh
Confidence 45555555568999999999887 2 47889999999885
No 2
>d1mm0a_ g.3.7.4 (A:) Antimicrobial peptide termicin {Termite (Pseudacanthotermes spiniger) [TaxId: 115113]}
Probab=29.70 E-value=4.8 Score=25.57 Aligned_cols=16 Identities=44% Similarity=0.640 Sum_probs=13.7
Q ss_pred cccCCCcccceeEEEee
Q 041185 20 TCQHQHRSHSVRVTTCS 36 (306)
Q Consensus 20 ~~~~~~~~~~~~~~~~~ 36 (306)
+||++|.....| -.|-
T Consensus 10 ~Cq~qh~IyFrr-A~Cd 25 (36)
T d1mm0a_ 10 TCQAQHSIYFRR-AFCD 25 (36)
T ss_dssp HHHHHSCTTEEE-EEEE
T ss_pred HHHhhccEEEEe-eeec
Confidence 799999999999 6664
No 3
>d1imta2 g.3.10.1 (A:37-80) Intestinal toxin 1 {Black mamba (Dendroaspis polylepis polylepis) [TaxId: 8620]}
Probab=15.44 E-value=31 Score=22.58 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=14.8
Q ss_pred CCCCCcccccccchhhhcCcCCc
Q 041185 145 GDESTPIFGSQIEAFQGHHRWPR 167 (306)
Q Consensus 145 Gs~~tPi~G~~Ir~FreHH~dP~ 167 (306)
+|...|++|+ |.||.-|-
T Consensus 8 ~ShKVPf~gk-----R~HHtCPC 25 (44)
T d1imta2 8 ASHKIPFSGQ-----RMHHTCPC 25 (44)
T ss_dssp TCCCSSCCSC-----CCSSCCCB
T ss_pred ccccCCcCcc-----cccccCCc
Confidence 6778999998 78998773
No 4
>d1z7aa1 c.6.2.6 (A:4-304) Hypothetical protein PA1517 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=8.33 E-value=1.7e+02 Score=24.46 Aligned_cols=58 Identities=19% Similarity=0.194 Sum_probs=37.7
Q ss_pred CcHHHHHHHHcCcccCchhhhccCCCCCCCceeeecccchHhhhhhhHHHHHHHHHHHhhcCCCCCCCCC
Q 041185 229 LPPLVVALQDAGVLVSRSQHAAHHRPPYNNNYCIVSGVWNEFLDKQKVFEALEMILFFKLGVRPRSWSEP 298 (306)
Q Consensus 229 lP~~V~~LQ~~gllLsrkhH~~HH~aPhet~YCIttGwlN~~Ld~i~fwr~LE~vI~~~TG~~PRaw~e~ 298 (306)
-|..|+.+++.|-=+ ..|+-.|..+.. +++- +.-..-++--.++++.||.+|+.|--|
T Consensus 106 ~P~~v~~i~~~GhEi--~~HG~~h~~~~~---------l~~~-~e~~~i~~~~~~l~~~tG~~p~G~~~p 163 (301)
T d1z7aa1 106 NPEVIRAMVADGHEI--CSHGYRWIDYQY---------MDEA-QEREHMLEAIRILTELTGQRPVGWYTG 163 (301)
T ss_dssp CHHHHHHHHHTTCEE--EECCSSSSCCTT---------CCHH-HHHHHHHHHHHHHHHHHSSCCCEECCS
T ss_pred ChHHHHHHHHcCcee--ecCccccccccc---------CCHH-HHHHHHHHHHHHHHHhccCCcccccCC
Confidence 689999999988411 246666654221 2232 223345566678899999999998644
No 5
>d1nera_ a.35.1.2 (A:) Ner {Bacteriophage mu [TaxId: 10677]}
Probab=7.91 E-value=61 Score=23.05 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=19.4
Q ss_pred chHhhhhhhHHHHHHHHHHHhhcCCC
Q 041185 267 WNEFLDKQKVFEALEMILFFKLGVRP 292 (306)
Q Consensus 267 lN~~Ld~i~fwr~LE~vI~~~TG~~P 292 (306)
++-.|++ =|.+.|++|-...|+.|
T Consensus 39 l~naL~r--p~pKgEriIA~aLg~~P 62 (74)
T d1nera_ 39 LANALER--HWPKGEQIIANALETKP 62 (74)
T ss_dssp HHHTTTS--SCHHHHHHHHHHTTSCH
T ss_pred HHHHHcC--CChHHHHHHHHHHCcCH
Confidence 4445554 59999999999999998
No 6
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}
Probab=7.91 E-value=20 Score=28.41 Aligned_cols=16 Identities=31% Similarity=0.571 Sum_probs=13.9
Q ss_pred HHHHHHHhhhceeeee
Q 041185 125 IGYVLADLGSGVYHWG 140 (306)
Q Consensus 125 ~g~llADF~SGlvHW~ 140 (306)
.-|++.|.++|+||.+
T Consensus 104 ad~V~~~~GTG~Vh~a 119 (179)
T d1udza_ 104 ADYVSQEDGTGIVHQA 119 (179)
T ss_dssp CTTCCSSSSCSEEEEC
T ss_pred ccccCccccCcceeee
Confidence 4788999999999985
No 7
>d1cxqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous sarcoma virus RSV [TaxId: 11886]}
Probab=7.90 E-value=93 Score=22.36 Aligned_cols=58 Identities=14% Similarity=-0.048 Sum_probs=37.2
Q ss_pred HHHHHHHHcCcccCchhhhccCCCCCCCceeeecccchHhhhhhhHHHHHHHHHHHhhcCCCCCCCCCCchhhh
Q 041185 231 PLVVALQDAGVLVSRSQHAAHHRPPYNNNYCIVSGVWNEFLDKQKVFEALEMILFFKLGVRPRSWSEPSSKWIE 304 (306)
Q Consensus 231 ~~V~~LQ~~gllLsrkhH~~HH~aPhet~YCIttGwlN~~Ld~i~fwr~LE~vI~~~TG~~PRaw~e~~~~w~e 304 (306)
.+..+|++.||-.. +..|| +.+-|...|+ |++.|++.+........-.+..+...|.|
T Consensus 79 ~~~~~~~~~gI~~~-------~~~p~-------~P~~ng~vER--~~~tlk~~~~~~~~~~~~~~~~~~~~w~~ 136 (147)
T d1cxqa_ 79 STREWLARWGIAHT-------TGIPG-------NSQGQAMVER--ANRLLKDKIRVLAEGDGFMKRIPTSKQGE 136 (147)
T ss_dssp HHHHHHHHHTCEEE-------CCCCC-----------CHHHHH--HHHHHHHHHHHHHHHTTCSSSCCHHHHHH
T ss_pred hhhhhhhheeEEee-------eeccc-------hhhcCceeeh--hhHHHHHHHHHHHhcccchhhCCcccHHH
Confidence 45678888888542 23343 4567899998 99999988877766544334446677765
No 8
>d1e6ya1 a.89.1.1 (A:1284-1569) Alpha chain {Archaeon Methanosarcina barkeri [TaxId: 2208]}
Probab=7.07 E-value=1.5e+02 Score=25.67 Aligned_cols=33 Identities=33% Similarity=0.248 Sum_probs=25.1
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhHH
Q 041185 86 WAHRAWVATGCSTVLVSLAKSIAAAASSHIWLE 118 (306)
Q Consensus 86 ~~~R~wv~~~~~~i~~~l~~~~~~~~~~~~wl~ 118 (306)
+.||+-|.+.++.+.+++++.-+......++|+
T Consensus 135 GSQRAaVlAAasGis~a~ATGNsnaGLngWYLS 167 (286)
T d1e6ya1 135 GSQRATVLAAAAGVACSLATGNANAGLSGWYLS 167 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred ccccchhhcccccceeeecccccccccchhhee
Confidence 478999999999998888876666666555553
No 9
>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=6.70 E-value=17 Score=28.65 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=14.0
Q ss_pred HHHHHHHhhhceeeee
Q 041185 125 IGYVLADLGSGVYHWG 140 (306)
Q Consensus 125 ~g~llADF~SGlvHW~ 140 (306)
.-|+..|+++|+||.+
T Consensus 112 ~d~V~~~~GTGiVh~a 127 (194)
T d1ffya2 112 GDHVTTDAGTGCVHTA 127 (194)
T ss_dssp CCSSCCSSSCSCCCBC
T ss_pred cceeecccCCcceeee
Confidence 4788999999999985
No 10
>d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose fungus (Colletotrichum lindemuthianum) [TaxId: 290576]}
Probab=6.30 E-value=2.4e+02 Score=21.61 Aligned_cols=52 Identities=19% Similarity=0.183 Sum_probs=0.0
Q ss_pred cHHHHHHHHcCcccCchhhhccCCCCCCCceeeecccchHhhhhhhHHHHHHHHHHHhhcCCCC
Q 041185 230 PPLVVALQDAGVLVSRSQHAAHHRPPYNNNYCIVSGVWNEFLDKQKVFEALEMILFFKLGVRPR 293 (306)
Q Consensus 230 P~~V~~LQ~~gllLsrkhH~~HH~aPhet~YCIttGwlN~~Ld~i~fwr~LE~vI~~~TG~~PR 293 (306)
|..++.+++.|--+.- |.-.|.. .+.+.+.=+.+ -.++.|++|+..+|.+||
T Consensus 60 p~~~~~~~~~GheIgn--Ht~~H~~--------~~~ls~~~~~~--ei~~~~~~i~~~~g~~~~ 111 (220)
T d2iw0a1 60 PDTIRRMRADGHLVGS--HTYAHPD--------LNTLSSADRIS--QMRQLEEATRRIDGFAPK 111 (220)
T ss_dssp HHHHHHHHHTTCEEEE--CCSSCCC--------GGGSCHHHHHH--HHHHHHHHHHHHHSCEES
T ss_pred HHHHHHHHhcCcEEec--ccccccc--------hhhhchHHHHH--HHHHHHHHHHHhhCCCCc
Done!