BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041187
(189 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P51949|MAT1_MOUSE CDK-activating kinase assembly factor MAT1 OS=Mus musculus GN=Mnat1
PE=2 SV=2
Length = 309
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 56/71 (78%)
Query: 10 NRELAIRKRIASIYNKREEDFPSLKEYNDYLEEVEDMIFNLVEGVNVHEFEEKIQEYQKE 69
++E+ IRK++ IYNKREEDFPSL+EYND+LEEVE+++FNL V++ ++K++ YQKE
Sbjct: 69 DKEVEIRKKVLKIYNKREEDFPSLREYNDFLEEVEEIVFNLTNNVDLENTKKKMEIYQKE 128
Query: 70 NAEQIMINQAR 80
N + I N+ +
Sbjct: 129 NKDVIQKNKLK 139
>sp|P51948|MAT1_HUMAN CDK-activating kinase assembly factor MAT1 OS=Homo sapiens GN=MNAT1
PE=1 SV=1
Length = 309
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 56/71 (78%)
Query: 10 NRELAIRKRIASIYNKREEDFPSLKEYNDYLEEVEDMIFNLVEGVNVHEFEEKIQEYQKE 69
++E+ IRK++ IYNKREEDFPSL+EYND+LEEVE+++FNL V++ ++K++ YQKE
Sbjct: 69 DKEVEIRKKVLKIYNKREEDFPSLREYNDFLEEVEEIVFNLTNNVDLDNTKKKMEIYQKE 128
Query: 70 NAEQIMINQAR 80
N + I N+ +
Sbjct: 129 NKDVIQKNKLK 139
>sp|P51951|MAT1_XENLA CDK-activating kinase assembly factor MAT1 OS=Xenopus laevis
GN=mnat1 PE=2 SV=1
Length = 309
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 52/71 (73%)
Query: 10 NRELAIRKRIASIYNKREEDFPSLKEYNDYLEEVEDMIFNLVEGVNVHEFEEKIQEYQKE 69
++E+ IRK+I IYNKREEDFPSL+EYND+LEE+E+++ NL V++ KI YQKE
Sbjct: 69 DKEVEIRKKILKIYNKREEDFPSLREYNDFLEEIEEIVLNLTNNVDLDNTRRKIDMYQKE 128
Query: 70 NAEQIMINQAR 80
N + I N+ +
Sbjct: 129 NKDTIQRNKIK 139
>sp|P51950|MAT1_MARGL CDK-activating kinase assembly factor MAT1 OS=Marthasterias
glacialis PE=1 SV=1
Length = 324
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 56/76 (73%)
Query: 11 RELAIRKRIASIYNKREEDFPSLKEYNDYLEEVEDMIFNLVEGVNVHEFEEKIQEYQKEN 70
+E+ IRKRI +NK+EE+FP+LK+YNDYLEE+E +IFNL G + + K+ +Y+K N
Sbjct: 71 KEVDIRKRILKDFNKQEEEFPALKDYNDYLEEIETIIFNLANGTELEATKRKVDQYRKNN 130
Query: 71 AEQIMINQARKAEELA 86
E IM N+++++ + A
Sbjct: 131 RESIMKNRSKQSSDQA 146
>sp|O94684|TFB3_SCHPO RNA polymerase II transcription factor B subunit 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pmh1 PE=1 SV=1
Length = 318
Score = 73.6 bits (179), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 49/60 (81%)
Query: 11 RELAIRKRIASIYNKREEDFPSLKEYNDYLEEVEDMIFNLVEGVNVHEFEEKIQEYQKEN 70
RE+ +RKRI+ I+NK +++F SL+ YNDYLEEVE + FNL+ ++V E EEK+++Y+K+N
Sbjct: 80 REVDVRKRISRIFNKGQQEFDSLQAYNDYLEEVEILTFNLIYKIDVEETEEKVKQYEKQN 139
>sp|Q6BP96|TFB3_DEBHA RNA polymerase II transcription factor B subunit 3 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=TFB3 PE=3 SV=2
Length = 340
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 53/74 (71%)
Query: 11 RELAIRKRIASIYNKREEDFPSLKEYNDYLEEVEDMIFNLVEGVNVHEFEEKIQEYQKEN 70
+E+ IRKR++ IYNK EEDF LK+YN YLE VE++IFNL G+++ E E + +Y+ E+
Sbjct: 79 KEIDIRKRVSGIYNKTEEDFDDLKDYNKYLESVENIIFNLNNGIDIEETESNLVKYENEH 138
Query: 71 AEQIMINQARKAEE 84
+I+ R++++
Sbjct: 139 KIEILEKNMRESQK 152
>sp|Q6FMP4|TFB3_CANGA RNA polymerase II transcription factor B subunit 3 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=TFB3 PE=3 SV=1
Length = 330
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 11 RELAIRKRIASIYNKREEDFPS-LKEYNDYLEEVEDMIFNLVEGVNVHEFEEKIQEYQKE 69
+E+ IRKR+ +++NK EDF + L+ YN YLEEVED+++ L ++V E EEK++ Y++
Sbjct: 90 KEVDIRKRVFNVFNKTLEDFDNDLEAYNKYLEEVEDIVYKLDNKIDVVETEEKLRTYEEL 149
Query: 70 NAEQIMINQARKAEEL 85
N + IM N R ++L
Sbjct: 150 NKQLIMNNMERSKKDL 165
>sp|Q03290|TFB3_YEAST RNA polymerase II transcription factor B subunit 3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TFB3 PE=1
SV=1
Length = 321
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 11 RELAIRKRIASIYNKREEDFP-SLKEYNDYLEEVEDMIFNLVEGVNVHEFEEKIQEYQKE 69
+E+ IRKR+ +++NK +DF L EYN YLEEVED+I+ L G++V + EEK++ Y++
Sbjct: 80 KEVDIRKRVFNVFNKTIDDFNGDLVEYNKYLEEVEDIIYKLDHGIDVAKTEEKLRTYEEL 139
Query: 70 NAEQIMINQARKAEELAA 87
N + IM N R E+ +
Sbjct: 140 NKQLIMNNLERSRTEIES 157
>sp|Q6CT73|TFB3_KLULA RNA polymerase II transcription factor B subunit 3 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=TFB3 PE=3 SV=1
Length = 318
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 11 RELAIRKRIASIYNKREEDFPSLKE-YNDYLEEVEDMIFNLVEGVNVHEFEEKIQEYQKE 69
+E+ IRKR+ +++NK EDF + ++ Y+ YLEEVED+I+NL G+++ + EE+++ Y++
Sbjct: 77 KEVDIRKRVFNVFNKTLEDFDNNQDDYDKYLEEVEDIIYNLDHGIDMEKTEERLRTYEEL 136
Query: 70 NAEQIMINQARKAEELA 86
N + IM N R +++A
Sbjct: 137 NKQLIMANLERSKQDVA 153
>sp|Q6C7D0|TFB3_YARLI RNA polymerase II transcription factor B subunit 3 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TFB3 PE=3 SV=1
Length = 346
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 11 RELAIRKRIASIYNKREEDFPSLKEYNDYLEEVEDMIFNLVEGVNVHE--FEEKIQEYQK 68
+E+ +R+R+ S+ NKRE++F +L +YN YLE++ED IF L+ G + ++I+ Y+K
Sbjct: 75 KEVDVRQRVMSVMNKREDEFDTLNDYNAYLEKIEDSIFTLLNGTADEKDALTKEIEAYEK 134
Query: 69 ENAEQIMINQARKAEE 84
E+ +I+ N + EE
Sbjct: 135 EHKAEIIANNKLRDEE 150
>sp|Q75D20|TFB3_ASHGO RNA polymerase II transcription factor B subunit 3 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=TFB3 PE=3 SV=1
Length = 318
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 11 RELAIRKRIASIYNKREEDFP-SLKEYNDYLEEVEDMIFNLVEGVNVHEFEEKIQEYQKE 69
RE+ IRKR+ +++NK EDF Y+ YLEEVED+++ L G++V + EEK++ Y++
Sbjct: 77 REVDIRKRVFNVFNKTIEDFDGDTAAYDQYLEEVEDIVYGLDNGIDVAKNEEKLRTYEEL 136
Query: 70 NAEQIMINQARKAEEL 85
N + I+ N R + L
Sbjct: 137 NKQLILANMERNKQTL 152
>sp|Q54I56|SMC6_DICDI Structural maintenance of chromosomes protein 6 OS=Dictyostelium
discoideum GN=smc6 PE=3 SV=1
Length = 1185
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 53/91 (58%), Gaps = 8/91 (8%)
Query: 3 ISSSNPQNRELAIRKRIASIYNKREEDFPSLKEYNDYLEEVEDMIFNLVEGVNVHEFEEK 62
++S+ PQ++ + +A+ +K +D+ +++E+ +++++DM+ V V + E E+K
Sbjct: 298 LNSAGPQDKYKSFL--MATQLDKMTKDYTTIREH---IDKIKDMLSQKV--VVIQELEKK 350
Query: 63 IQEYQKENAE-QIMINQARKAEELAAALAAS 92
++EY KE + Q M+ RK E LA S
Sbjct: 351 VREYNKEYKDLQQMVGLERKISEFKNQLAWS 381
>sp|Q28XQ5|ASPG2_DROPS L-asparaginase-like protein GA18140 OS=Drosophila pseudoobscura
pseudoobscura GN=GA18140 PE=3 SV=2
Length = 457
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 40 LEEVEDMIFNLVEGVNVHEFEEKIQEYQKENAEQIMINQARKAEELAAALAASKG 94
++ VE + N EGV+ EFEE EY ++ A +I +++ KAEE+ + L S G
Sbjct: 386 VQRVEKITLN--EGVDSREFEE---EYVEDKAAEIDVDEGEKAEEVRSLLDESPG 435
>sp|Q5UQU8|YL357_MIMIV Uncharacterized protein L357 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L357 PE=4 SV=1
Length = 496
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 15/92 (16%)
Query: 55 NVHEFEEKIQEYQKENAEQIMINQARK--------------AEELAAALAASKGISAQDD 100
N +FE ++Q+Y E + NQ E+L + A G++ DD
Sbjct: 185 NTSDFESRLQQYMNERDYDLPRNQPPPEIDFTLDHSGEKVMKEKLMRKMGAQSGMNGMDD 244
Query: 101 TNGDPSQSALGGI-GVGGTQGQYVPTLAGGQP 131
G + + G+ GVGG Y L G P
Sbjct: 245 MGGVCGFNGMSGMNGVGGMDDFYASILGQGSP 276
>sp|B0TZY8|SYA_FRAP2 Alanine--tRNA ligase OS=Francisella philomiragia subsp.
philomiragia (strain ATCC 25017) GN=alaS PE=3 SV=1
Length = 865
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 46 MIFNLVEGVNVHEFEEKIQEYQKENAEQIMINQARKAEELAAALAASKGISAQDDTNGDP 105
+I +EGV++ EKI +Y+ +N + + + A+++ + SK I++ GD
Sbjct: 761 LIIANLEGVDIKTLREKIDDYKSKNDKMVAVLSTINADKVQFVIGVSKSITSLIKA-GDI 819
Query: 106 SQSALGGI-GVGGTQGQYVPTLA-GGQPRPTGIPQPIA 141
++ G I G GG + P +A GG T I + ++
Sbjct: 820 AKEFSGYIDGKGGGR----PDMAQGGGNNSTNIDKALS 853
>sp|Q9C019|TRI15_HUMAN Tripartite motif-containing protein 15 OS=Homo sapiens GN=TRIM15
PE=2 SV=1
Length = 465
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 34 KEYNDYLEEVEDMIFNLVEGVNVHEFEEKIQEYQKENAEQIMINQAR 80
KE ++Y+ +V + + L G V E EEK Q+ E + + +NQ+R
Sbjct: 200 KERDEYITKVSEEVTRL--GAQVKELEEKCQQPASELLQDVRVNQSR 244
>sp|Q5TM55|TRI15_MACMU Tripartite motif-containing protein 15 OS=Macaca mulatta GN=TRIM15
PE=3 SV=1
Length = 465
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 34 KEYNDYLEEVEDMIFNLVEGVNVHEFEEKIQEYQKENAEQIMINQAR 80
KE ++Y+ +V + + L G V E EEK Q+ E + I +NQ+R
Sbjct: 200 KERDEYITKVSEEVSRL--GAQVKELEEKCQQPASELLQDIRVNQSR 244
>sp|A1CIL1|CREB_ASPCL Probable ubiquitin carboxyl-terminal hydrolase creB OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=creB PE=3 SV=2
Length = 760
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 58 EFEEKIQEYQKENAEQIMI---------NQARKAEELAAALAASKGISAQDDTNGDPS-- 106
E E K E ++E AE++ NQ R+ EL AAL ASK AQ+D P
Sbjct: 588 EKERKAAEKEREKAEKLRRKEQEARAKENQRREEAELKAALEASKASKAQEDRRQSPDHG 647
Query: 107 QSALGG 112
+ LGG
Sbjct: 648 KDKLGG 653
>sp|Q7YR33|TRI15_PANTR Tripartite motif-containing protein 15 OS=Pan troglodytes GN=TRIM15
PE=3 SV=1
Length = 465
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 34 KEYNDYLEEVEDMIFNLVEGVNVHEFEEKIQEYQKENAEQIMINQAR 80
KE ++Y+ +V + + L G V E EEK Q+ E + + +NQ+R
Sbjct: 200 KERDEYITKVSEEVTRL--GAQVKELEEKCQQPASELLQDVRVNQSR 244
>sp|B4GHE3|ASPG2_DROPE L-asparaginase-like protein GL17509 OS=Drosophila persimilis
GN=GL17509 PE=3 SV=1
Length = 457
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 40 LEEVEDMIFNLVEGVNVHEFEEKIQEYQKENAEQIMINQARKAEELAAALAASKG 94
++ VE + N EGV+ EFEE EY ++ +I +++ KAEE+ + L S G
Sbjct: 386 VQRVEKITLN--EGVDSREFEE---EYLEDKDAEIDVDEGEKAEEVRSLLDESPG 435
>sp|A2Q9N1|CREB_ASPNC Probable ubiquitin carboxyl-terminal hydrolase creB OS=Aspergillus
niger (strain CBS 513.88 / FGSC A1513) GN=creB PE=3 SV=2
Length = 758
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 64 QEYQKENAEQIMINQARKAEELAAALAASKGISAQDD--------TNGDPSQSALG 111
++ +KE ++ NQ R+ EL AAL ASK A +D +GDP +S+ G
Sbjct: 599 KQRRKEQEARVKENQRREEAELKAALEASKASKADEDRRNPTENGKDGDPKRSSNG 654
>sp|Q6PCZ4|MAGE1_MOUSE Melanoma-associated antigen E1 OS=Mus musculus GN=Magee1 PE=1 SV=1
Length = 918
Score = 30.0 bits (66), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 9 QNRELAIRKRIASIYNKREEDFPSLKEYNDYLEEVEDMI 47
+ ++ I K +A IYNK D+P+L YN+ LEE D +
Sbjct: 630 ETTKMKILKFMAKIYNKDPMDWPAL--YNEALEEDADRV 666
>sp|Q8BW86|ARG33_MOUSE Rho guanine nucleotide exchange factor 33 OS=Mus musculus
GN=Arhgef33 PE=2 SV=3
Length = 850
Score = 30.0 bits (66), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 9 QNRELAIRKRIASIYNKREEDFPSLKEYNDYLEEVEDMIFNLVEGVNV--HEFEEKIQEY 66
Q+ E A+ +++ S EE +K +Y +E ++++ + E ++KI++
Sbjct: 48 QHGEYALEEKVKSCRCSMEEKVTEMKNSLNYFKEELSNAMSMIQAITSKQEEMQQKIEQL 107
Query: 67 QKEN---AEQIMINQARKAEELAAALAASKGISAQDDTNGDPSQS 108
Q+E + ++ +A+K E A A AS T G P +S
Sbjct: 108 QQEKRRESRKVKAKKAQKEEHGAQAGPASAPAPGSAPTQGSPFRS 152
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,520,168
Number of Sequences: 539616
Number of extensions: 3361876
Number of successful extensions: 12151
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 123
Number of HSP's that attempted gapping in prelim test: 11911
Number of HSP's gapped (non-prelim): 357
length of query: 189
length of database: 191,569,459
effective HSP length: 111
effective length of query: 78
effective length of database: 131,672,083
effective search space: 10270422474
effective search space used: 10270422474
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)