Query 041187
Match_columns 189
No_of_seqs 120 out of 189
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 07:21:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041187.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041187hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u43_A Colicin-E2 immunity pro 51.3 40 0.0014 24.8 6.0 50 18-70 18-78 (94)
2 4efp_A 30KDA protein; VHS doma 29.0 49 0.0017 28.2 3.8 37 42-78 9-45 (239)
3 1k8v_A Neuropeptide F; moniezi 26.5 39 0.0013 21.4 2.1 23 24-46 8-30 (40)
4 1vcs_A Vesicle transport throu 22.5 1.9E+02 0.0067 20.6 5.7 57 14-70 20-83 (102)
5 3nrk_A LIC12922; NC domain, pa 18.0 79 0.0027 26.6 3.0 44 30-73 96-155 (325)
6 2joi_A Hypothetical protein TA 15.1 66 0.0023 24.7 1.6 11 33-43 93-103 (118)
7 2p5t_A Putative transcriptiona 13.7 57 0.002 24.3 1.0 19 29-47 131-149 (158)
8 3a7p_A Autophagy protein 16; c 13.2 3.4E+02 0.012 21.4 5.4 33 56-88 112-144 (152)
9 3p0j_A Tyrosyl-tRNA synthetase 12.9 4.7E+02 0.016 25.0 7.2 45 10-54 578-643 (690)
10 2e87_A Hypothetical protein PH 12.4 1.1E+02 0.0038 25.7 2.5 45 25-69 63-115 (357)
No 1
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=51.30 E-value=40 Score=24.75 Aligned_cols=50 Identities=16% Similarity=0.245 Sum_probs=35.7
Q ss_pred HHHHHhcccCCCCCChHHHHHHHHHHHHHH-----HHhcc----CCC--HHHHHHHHHHHHHHh
Q 041187 18 RIASIYNKREEDFPSLKEYNDYLEEVEDMI-----FNLVE----GVN--VHEFEEKIQEYQKEN 70 (189)
Q Consensus 18 rv~~ifNk~e~DF~~l~~YNdYLE~vEdii-----fnL~~----g~d--~~~te~~l~~y~~~n 70 (189)
=|-+|||- +..+-.+-+++|+.++.++ -+|+. +.| .+.+=.+|++|++.|
T Consensus 18 lv~~I~~~---~~~~E~e~d~ll~~fe~iteHP~gSDLIfyP~~~~e~SPEgIv~~IKeWRa~n 78 (94)
T 3u43_A 18 FVKKICRA---EGATEEDDNKLVREFERLTEHPDGSDLIYYPRDDREDSPEGIVKEIKEWRAAN 78 (94)
T ss_dssp HHHHHHHT---CCSSHHHHHHHHHHHHHHHCCTTTTHHHHSCCTTSCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHhc---CCCCHHHHHHHHHHHHHhCCCCCccCeeeeCCCCCCCCHHHHHHHHHHHHHHc
Confidence 35566763 3456666777889999887 67773 333 477889999999887
No 2
>4efp_A 30KDA protein; VHS domain, beta-trefoil, unknown function; HET: 0AF PGE; 1.33A {Bombyx mori} PDB: 4efq_A* 4efr_A* 3pub_A
Probab=29.04 E-value=49 Score=28.16 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=33.8
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHhHHHHHHHH
Q 041187 42 EVEDMIFNLVEGVNVHEFEEKIQEYQKENAEQIMINQ 78 (189)
Q Consensus 42 ~vEdiifnL~~g~d~~~te~~l~~y~~~n~~~I~~n~ 78 (189)
.+|+.+||.|-..|-+.+-++...|+++.+..|.+|-
T Consensus 9 ~led~lynsV~tgDYd~Av~~~~~l~~~~~g~ii~~~ 45 (239)
T 4efp_A 9 ILEEQLYNSIVVADYDSAVEKSKHLYEEKKSEVITNV 45 (239)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHhcCCCchHHHH
Confidence 4688999999999999999999999999999998874
No 3
>1k8v_A Neuropeptide F; moniezia expansa, NPF, unknown function; NMR {Synthetic} SCOP: j.6.1.1
Probab=26.51 E-value=39 Score=21.38 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=18.6
Q ss_pred cccCCCCCChHHHHHHHHHHHHH
Q 041187 24 NKREEDFPSLKEYNDYLEEVEDM 46 (189)
Q Consensus 24 Nk~e~DF~~l~~YNdYLE~vEdi 46 (189)
+.+..-|.|..++.+||.++-.-
T Consensus 8 pp~p~~F~s~~~l~~YL~~LneY 30 (40)
T 1k8v_A 8 NPSDLVLDNKAALRDYLRQINEY 30 (40)
T ss_dssp CSTTCSCSSCSHHHHHHHHHHHH
T ss_pred CCChhhcCCHHHHHHHHHHHHHH
Confidence 45567899999999999987653
No 4
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=22.51 E-value=1.9e+02 Score=20.64 Aligned_cols=57 Identities=14% Similarity=0.289 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcccCCCCC-ChHHHHHHHHHHHHHHHHhc---cCCCH---HHHHHHHHHHHHHh
Q 041187 14 AIRKRIASIYNKREEDFP-SLKEYNDYLEEVEDMIFNLV---EGVNV---HEFEEKIQEYQKEN 70 (189)
Q Consensus 14 ~iRkrv~~ifNk~e~DF~-~l~~YNdYLE~vEdiifnL~---~g~d~---~~te~~l~~y~~~n 70 (189)
+|++++..+-+..-+.-. .+++--..|++.++||-.+- .+++. .....+|+.|+.+=
T Consensus 20 ~i~~kl~~i~~~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL 83 (102)
T 1vcs_A 20 EITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEM 83 (102)
T ss_dssp HHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHH
Confidence 588888888776655543 67788889999999987753 44443 45778899998773
No 5
>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid}
Probab=17.98 E-value=79 Score=26.56 Aligned_cols=44 Identities=14% Similarity=0.244 Sum_probs=28.8
Q ss_pred CCChHHHHHHHHH-------------HHHHHHHhc--cCCCHH-HHHHHHHHHHHHhHHH
Q 041187 30 FPSLKEYNDYLEE-------------VEDMIFNLV--EGVNVH-EFEEKIQEYQKENAEQ 73 (189)
Q Consensus 30 F~~l~~YNdYLE~-------------vEdiifnL~--~g~d~~-~te~~l~~y~~~n~~~ 73 (189)
+.|...|..+|+. ..+|+...+ ..+.+. -|++.|+.|=.+|+..
T Consensus 96 ~~~~~~~~~~L~~~~g~t~~~~~~~lr~~l~~~~lv~~~v~v~~Ptd~ei~~yy~~~~~~ 155 (325)
T 3nrk_A 96 ITNRKQFEKTMETSSGMPFELWVTELPYQIKKGQLLQLKIAVPPPNEQEIRSWYNQNKDK 155 (325)
T ss_dssp CCCHHHHHHHHHHHHCSCHHHHGGGHHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHCHHH
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHhhhh
Confidence 4567788888877 445554433 233321 1788999999999875
No 6
>2joi_A Hypothetical protein TA0095; structural genomics, COG4004 orthologous group, structural genomics consortium, SGC, unknown function; NMR {Thermoplasma acidophilum}
Probab=15.14 E-value=66 Score=24.70 Aligned_cols=11 Identities=36% Similarity=1.066 Sum_probs=8.7
Q ss_pred hHHHHHHHHHH
Q 041187 33 LKEYNDYLEEV 43 (189)
Q Consensus 33 l~~YNdYLE~v 43 (189)
.+-||||||++
T Consensus 93 nKrfrdFLe~a 103 (118)
T 2joi_A 93 VRTYNDFIEKL 103 (118)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35699999975
No 7
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=13.71 E-value=57 Score=24.30 Aligned_cols=19 Identities=32% Similarity=0.823 Sum_probs=14.9
Q ss_pred CCCChHHHHHHHHHHHHHH
Q 041187 29 DFPSLKEYNDYLEEVEDMI 47 (189)
Q Consensus 29 DF~~l~~YNdYLE~vEdii 47 (189)
.++++..|++||+.++.++
T Consensus 131 ~gdsi~~~~~~l~~~~~~~ 149 (158)
T 2p5t_A 131 TFDEIERYSGYLDGIERML 149 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHhHHHHHHHHH
Confidence 4458889999998887764
No 8
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=13.20 E-value=3.4e+02 Score=21.45 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 041187 56 VHEFEEKIQEYQKENAEQIMINQARKAEELAAA 88 (189)
Q Consensus 56 ~~~te~~l~~y~~~n~~~I~~n~~~~~ee~~~~ 88 (189)
....+.++.+-+++|..+|.+=-.++.++.+..
T Consensus 112 ~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~M 144 (152)
T 3a7p_A 112 NNVLQQKLSDLKKEHSQLVARWLKKTEKETEAM 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355789999999999999999987777665543
No 9
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=12.94 E-value=4.7e+02 Score=24.96 Aligned_cols=45 Identities=18% Similarity=0.356 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHhcccCCCCCChHHHHHHH---------------------HHHHHHHHHhccCC
Q 041187 10 NRELAIRKRIASIYNKREEDFPSLKEYNDYL---------------------EEVEDMIFNLVEGV 54 (189)
Q Consensus 10 ekEv~iRkrv~~ifNk~e~DF~~l~~YNdYL---------------------E~vEdiifnL~~g~ 54 (189)
+-+-+|+++|.++|+--.-+..-+-+|-.|+ +.+|+|-=.+.+|.
T Consensus 578 D~~~~i~~KI~kA~c~p~ve~np~l~~~~~~~~~~~~~~i~r~~~~Gg~~~~~~~eel~~~y~~G~ 643 (690)
T 3p0j_A 578 DNDMDIRRKIKKAYSAPNEEANPVISVAQHLLAQHGALSIERGEANGGNVSYNTPEALVADCGSGA 643 (690)
T ss_dssp CCHHHHHHHHHHSCCCTTCSCSHHHHHHHHHHHHHSCEEECCCTTTTCCEEESSHHHHHHHHHSSS
T ss_pred CCHHHHHHHHHHhcCCCCCCCChHHHHHHHHhccCCceEEechhhhCCCCCccCHHHHHHHHHcCC
Confidence 6678999999999975433444455777776 46677777777773
No 10
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=12.42 E-value=1.1e+02 Score=25.70 Aligned_cols=45 Identities=20% Similarity=0.366 Sum_probs=32.8
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHH------HhccCCCH--HHHHHHHHHHHHH
Q 041187 25 KREEDFPSLKEYNDYLEEVEDMIF------NLVEGVNV--HEFEEKIQEYQKE 69 (189)
Q Consensus 25 k~e~DF~~l~~YNdYLE~vEdiif------nL~~g~d~--~~te~~l~~y~~~ 69 (189)
.--+.|+.+.+-+.++++++++.+ -++|.+|. ..+.+.+..|.+.
T Consensus 63 ~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~ 115 (357)
T 2e87_A 63 KVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVER 115 (357)
T ss_dssp HHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333457888888999999999888 66677787 3455667777554
Done!