Query 041187
Match_columns 189
No_of_seqs 120 out of 189
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 07:21:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041187.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041187hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1s35a1 a.7.1.1 (A:1063-1168) 42.2 12 0.00086 24.0 3.6 46 32-78 7-52 (106)
2 d1u5pa1 a.7.1.1 (A:1662-1771) 33.6 46 0.0033 21.1 5.6 46 32-78 10-55 (110)
3 d1u5pa2 a.7.1.1 (A:1772-1872) 19.1 52 0.0038 20.4 3.5 39 32-70 6-44 (101)
4 d1wb8a2 d.44.1.1 (A:93-208) Fe 15.3 38 0.0028 23.4 2.2 31 36-66 85-115 (116)
5 d2gtaa1 a.204.1.2 (A:1-98) Hyp 15.3 50 0.0037 21.7 2.8 31 37-67 61-97 (98)
6 d1cf7b_ a.4.5.17 (B:) Cell cyc 11.9 50 0.0036 22.1 1.9 14 11-24 48-61 (82)
7 d1s35a2 a.7.1.1 (A:1169-1273) 10.4 1.6E+02 0.012 18.1 4.1 44 34-78 10-53 (105)
8 d1cuna2 a.7.1.1 (A:116-219) Sp 9.7 1.3E+02 0.0098 18.5 3.5 39 33-71 6-44 (104)
9 d2fgea3 d.185.1.1 (A:272-539) 9.3 1.8E+02 0.013 21.8 4.6 30 38-67 100-134 (268)
10 d1a6qa1 a.159.1.1 (A:297-368) 9.1 1E+02 0.0073 19.9 2.6 23 12-34 13-35 (72)
No 1
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.18 E-value=12 Score=23.97 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=36.4
Q ss_pred ChHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhHHHHHHHH
Q 041187 32 SLKEYNDYLEEVEDMIFNLVEGVNVHEFEEKIQEYQKENAEQIMINQ 78 (189)
Q Consensus 32 ~l~~YNdYLE~vEdiifnL~~g~d~~~te~~l~~y~~~n~~~I~~n~ 78 (189)
++.+..+.|.+.|..+-+.-.+.|++.++..+++++.-..+ |..++
T Consensus 7 ~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~h~~l~~e-i~~~~ 52 (106)
T d1s35a1 7 DLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDE-IDGHQ 52 (106)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH-HHHHH
Confidence 67788888999998887777899999999999998875444 44443
No 2
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=33.60 E-value=46 Score=21.06 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhHHHHHHHH
Q 041187 32 SLKEYNDYLEEVEDMIFNLVEGVNVHEFEEKIQEYQKENAEQIMINQ 78 (189)
Q Consensus 32 ~l~~YNdYLE~vEdiifnL~~g~d~~~te~~l~~y~~~n~~~I~~n~ 78 (189)
++.+.-.+|.+.|.++-.-..|.|++.++..+.+++.- ...|....
T Consensus 10 ~~~el~~Wl~e~e~~l~~~~~g~d~~~~~~~~~~h~~~-~~ei~~~~ 55 (110)
T d1u5pa1 10 GIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLL-EADISAHE 55 (110)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH-HHHHHHhh
Confidence 46677888999999888888899999999999998764 44455443
No 3
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=19.06 E-value=52 Score=20.38 Aligned_cols=39 Identities=5% Similarity=0.143 Sum_probs=30.3
Q ss_pred ChHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 041187 32 SLKEYNDYLEEVEDMIFNLVEGVNVHEFEEKIQEYQKEN 70 (189)
Q Consensus 32 ~l~~YNdYLE~vEdiifnL~~g~d~~~te~~l~~y~~~n 70 (189)
++.+...+|.+.|.++-+--.|.|++.++..+++|+.-.
T Consensus 6 ~~~el~~Wl~e~~~~l~s~~~g~d~~~~~~ll~~h~~~~ 44 (101)
T d1u5pa2 6 DMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLE 44 (101)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHH
Confidence 455667788888887766667889999999999998743
No 4
>d1wb8a2 d.44.1.1 (A:93-208) Fe superoxide dismutase (FeSOD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=15.33 E-value=38 Score=23.41 Aligned_cols=31 Identities=29% Similarity=0.380 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 041187 36 YNDYLEEVEDMIFNLVEGVNVHEFEEKIQEY 66 (189)
Q Consensus 36 YNdYLE~vEdiifnL~~g~d~~~te~~l~~y 66 (189)
|-||.-...+-|-+..+-||.+.++++++++
T Consensus 85 yldY~n~r~~Yi~~~~~~iNW~~ve~rl~~~ 115 (116)
T d1wb8a2 85 YLQYKNKRADYVNAWWNVVNWDAAEKKLQKY 115 (116)
T ss_dssp HHHHTTCHHHHHHHHGGGBCHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHcCHHHHHHHHHHh
Confidence 7888888899999999999999999998874
No 5
>d2gtaa1 a.204.1.2 (A:1-98) Hypothetical protein YpjD {Bacillus subtilis [TaxId: 1423]}
Probab=15.31 E-value=50 Score=21.72 Aligned_cols=31 Identities=23% Similarity=0.519 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhc-----cCCCHHH-HHHHHHHHH
Q 041187 37 NDYLEEVEDMIFNLV-----EGVNVHE-FEEKIQEYQ 67 (189)
Q Consensus 37 NdYLE~vEdiifnL~-----~g~d~~~-te~~l~~y~ 67 (189)
.+--+++=|+.|-|+ .|+|+++ ...++++|+
T Consensus 61 ~~l~~ElaDVl~yl~~LA~~l~iDL~~a~~~k~~K~~ 97 (98)
T d2gtaa1 61 KSMEEEIGDVLFVLVCLANSLDISLEEAHDRVMHKFN 97 (98)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHhhc
Confidence 456678888888876 7888855 577777763
No 6
>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.94 E-value=50 Score=22.05 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhc
Q 041187 11 RELAIRKRIASIYN 24 (189)
Q Consensus 11 kEv~iRkrv~~ifN 24 (189)
-|-.|||||..++|
T Consensus 48 d~KNIRRRVYDALN 61 (82)
T d1cf7b_ 48 DQKNIRRRVYDALN 61 (82)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHH
Confidence 46889999999887
No 7
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.36 E-value=1.6e+02 Score=18.09 Aligned_cols=44 Identities=16% Similarity=0.158 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhHHHHHHHH
Q 041187 34 KEYNDYLEEVEDMIFNLVEGVNVHEFEEKIQEYQKENAEQIMINQ 78 (189)
Q Consensus 34 ~~YNdYLE~vEdiifnL~~g~d~~~te~~l~~y~~~n~~~I~~n~ 78 (189)
.+-...|.+.|.++-.-..|.|+..++..+++|+. -...|....
T Consensus 10 ~~~~~Wi~~~e~~l~~~~~g~dl~~v~~l~k~h~~-l~~~l~~~~ 53 (105)
T d1s35a2 10 KQAEAILSNQEYTLAHLEPPDSLEAAEAGIRKFED-FLGSMENNR 53 (105)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-HHHHHHHhH
Confidence 34456677777777666678899999999998876 334444443
No 8
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=9.68 E-value=1.3e+02 Score=18.46 Aligned_cols=39 Identities=8% Similarity=0.135 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhH
Q 041187 33 LKEYNDYLEEVEDMIFNLVEGVNVHEFEEKIQEYQKENA 71 (189)
Q Consensus 33 l~~YNdYLE~vEdiifnL~~g~d~~~te~~l~~y~~~n~ 71 (189)
+++.-..|++.+.++-.---|.|+..++..+++++.-..
T Consensus 6 ~~e~~~Wl~e~~~~l~~~~~g~d~~~v~~ll~~h~~~~~ 44 (104)
T d1cuna2 6 VEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFET 44 (104)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 444555566666655444567788999998887766543
No 9
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=9.32 E-value=1.8e+02 Score=21.81 Aligned_cols=30 Identities=20% Similarity=0.505 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHH
Q 041187 38 DYLEEVEDMIFNLV-----EGVNVHEFEEKIQEYQ 67 (189)
Q Consensus 38 dYLE~vEdiifnL~-----~g~d~~~te~~l~~y~ 67 (189)
+.+++|+.+|++++ +|+|.+..++-|.+++
T Consensus 100 ~~~~~~~~~i~~~l~~~~~~g~d~~~i~~~l~~~E 134 (268)
T d2fgea3 100 ENVQKVEELIMDTLKKLAEEGFDNDAVEASMNTIE 134 (268)
T ss_dssp GGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 34556666666554 6788777777666544
No 10
>d1a6qa1 a.159.1.1 (A:297-368) Protein serine/threonine phosphatase 2C, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.14 E-value=1e+02 Score=19.87 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhcccCCCCCChH
Q 041187 12 ELAIRKRIASIYNKREEDFPSLK 34 (189)
Q Consensus 12 Ev~iRkrv~~ifNk~e~DF~~l~ 34 (189)
|..|.+||..|.++..+++++|.
T Consensus 13 d~~Le~~v~eii~~~~~~~~dl~ 35 (72)
T d1a6qa1 13 DKYLECRVEEIIKKQGEGVPDLV 35 (72)
T ss_dssp HHHHHHHHHHHCC----CCCCHH
T ss_pred HHHHHHHHHHHHHHcccCCchHH
Confidence 44689999999999887776654
Done!