Query 041188
Match_columns 409
No_of_seqs 232 out of 745
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 07:22:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041188.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041188hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o70_A Fasciclin I, FAS I, FCN 100.0 1.2E-35 4.3E-40 293.7 8.4 254 62-367 7-314 (324)
2 1w7d_A Fasciclin-like protein; 99.9 1.3E-23 4.5E-28 183.8 1.1 119 62-194 4-136 (137)
3 2vxp_A Transforming growth fac 99.8 3.7E-22 1.3E-26 173.6 5.7 118 62-192 3-132 (132)
4 1nyo_A Immunogenic protein MPT 99.8 1.3E-21 4.3E-26 176.5 6.5 120 60-194 27-162 (163)
5 2vxp_A Transforming growth fac 99.8 1.5E-19 5.2E-24 157.0 7.3 114 237-361 4-131 (132)
6 1w7d_A Fasciclin-like protein; 99.8 8.2E-20 2.8E-24 159.7 2.6 114 238-363 6-136 (137)
7 1nyo_A Immunogenic protein MPT 99.7 1.2E-18 4.2E-23 156.9 5.8 115 235-363 28-162 (163)
8 1o70_A Fasciclin I, FAS I, FCN 99.7 2E-17 7E-22 163.2 7.3 134 55-196 153-312 (324)
9 2rdd_B UPF0092 membrane protei 8.8 1.8E+02 0.0061 19.0 2.0 19 6-24 5-23 (37)
10 4egx_A Kinesin-like protein KI 8.7 2.1E+02 0.0074 25.2 3.1 106 76-184 43-162 (184)
No 1
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1
Probab=100.00 E-value=1.2e-35 Score=293.73 Aligned_cols=254 Identities=16% Similarity=0.173 Sum_probs=175.9
Q ss_pred hHHHHHH-------hcCcHHHHHHhhccC--cccccccCCCCeEEEeeCChhhhcCCC-------CChhHHhhhcccCCc
Q 041188 62 MLAPILS-------HLGFNELATAAPSLS--NDAVATSWSGPSTLFAPSDSSLHTCFS-------CSVPSLLREHLVPGL 125 (409)
Q Consensus 62 ~l~~~L~-------~~Gft~la~lL~~~~--~~~~~l~~~g~~TIFAPtD~AF~~l~~-------~~L~~LL~yHVvpg~ 125 (409)
++.++|+ ...|++|+.+|+.++ +. +.+.+.+++|||||+|+||.+... ..++++|+|||++|+
T Consensus 7 ~i~~~L~~~~~~~~~~~~s~~~~~l~~ag~~l~-~~L~~~~~~TvFAPtn~Af~~~~~~~l~~~~~~l~~iL~yHvv~g~ 85 (324)
T 1o70_A 7 TVTQFLQSFKENAENGALRKFYEVIMDNGGAVL-DDINSLTEVTILAPSNEAWNSSNINNVLRDRNKMRQILNMHIIKDR 85 (324)
T ss_dssp ------------CCHHHHHHHHHHHHHTCSHHH-HHHHTCSSEEEEEECHHHHHHTCTHHHHTCHHHHHHHHHHTEESSC
T ss_pred hHHHHHHHHHhhhcCCcHHHHHHHHHHHhHHHH-HHHcCCCCeEEEEEChHhhhcccHhhhhCCHHHHHHHHHhcEeCCe
Confidence 5677777 334999999999987 44 445667999999999999987532 357899999999999
Q ss_pred cchHHHhcccCC--CeeeccCCCceEEEeeCCCCccccceEEEcc----EEEeCcccc-cCCceEEEEecCccCCCCCCc
Q 041188 126 FTIDYLRKLAFG--TKIESLSPGRCITITSSKSENDTVSKVFIGG----VEITHPDLF-NNGIIIIHGIQGYISPLSPLS 198 (409)
Q Consensus 126 ~~~~~L~~l~~g--~~i~Tll~g~~L~Vt~~~~~~~~~~~v~Vng----a~Vt~~Di~-~ng~~VIH~ID~VL~P~~~~~ 198 (409)
++.++|.+...+ ..++|+..+..+.++..+. ..++.+++|| ++|+.+|+. .|| |||+||+||.|+..
T Consensus 86 ~~~~~l~~~~~~~~~~~~Tl~g~~~l~~~v~~~--~~~~~v~v~~g~~~a~v~~~di~~~NG--vIhvID~VL~pp~~-- 159 (324)
T 1o70_A 86 LNVDKIRQKNANLIAQVPTVNNNTFLYFNVRGE--GSDTVITVEGGGVNATVIQADVAQTNG--YVHIIDHVLGVPYT-- 159 (324)
T ss_dssp CCHHHHHHHTSSSCCCEEBSSTTCEEEEEEESC--GGGCEEEEEETTEEEEEEEEEEECSSE--EEEEESSCTTSCCS--
T ss_pred ecHHHHhhccCCCceEEEcCCCCceEEEEEeec--CCceEEEEcCCceeEEEEeccccccCc--EEEEEchhhhhchh--
Confidence 999999875321 1678875443355543321 0134688885 899999986 455 99999999999632
Q ss_pred ccccccccccCCCCCCCCCCcccccccchhHHHHHHHHHHHHHHh-cChhHHHHHHHH-hH-HHHh-ccCCcEEEecCcc
Q 041188 199 CDVERMTSLSFPFQPSDRGHHHQQIQTQQPIMRLMLRDAMLRLRN-NGYSILSLAMKV-KY-QELI-NLANMTVFALDDV 274 (409)
Q Consensus 199 ~~~~~~~sl~~p~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~L~~-~gfs~~a~lL~~-~l-~~l~-~~~~~TVFAPtD~ 274 (409)
++.+.++. ..|+.|..+++. .+ +.+. ..+++|||||+|+
T Consensus 160 -------------------------------------ti~~~l~~~~~fs~~~~~l~~~gl~~~L~~~~~~~TvFAPtd~ 202 (324)
T 1o70_A 160 -------------------------------------TVLGKLESDPMMSDTYKMGKFSHFNDQLNNTQRRFTYFVPRDK 202 (324)
T ss_dssp -------------------------------------CHHHHHHHCGGGHHHHHHTTTTTTTGGGGCSSSEEEEEEECHH
T ss_pred -------------------------------------hHHHHhhcCchHHHHHHHHHhhCHHHHhCCCCCCeEEEEeChH
Confidence 02333443 457888777764 34 3455 3578999999999
Q ss_pred ccccCC------------c---ccc-ccceeeeecC-cccChhhhccCCC-C--cccccccCCceEEEEE--cCCccccc
Q 041188 275 SIFSGS------------Y---TYI-SNVRFHIIPN-RYLTIGDLERLPV-G--TTLPTLARGQSLTVTT--AGGASVTA 332 (409)
Q Consensus 275 Af~~~~------------~---~~l-~iL~yHVVpg-~~L~~~dL~~l~~-g--~~l~TLl~g~~L~vt~--~~g~~~~~ 332 (409)
||.... . +.+ ++|+|||||+ ++++.++|..... + ..++|+. ..+.|+. .+|.
T Consensus 203 Af~~l~~~~~~~~~~~l~~~~~~~l~~iL~yHvv~~~~~~~~~~l~~~~~~~~~~~~~Tl~--~~l~v~~~~~~~~---- 276 (324)
T 1o70_A 203 GWQKTELDYPSAHKKLFMADFSYHSKSILERHLAISDKEYTMKDLVKFSQESGSVILPTFR--DSLSIRVEEEAGR---- 276 (324)
T ss_dssp HHHHHHHHCHHHHHHHTSGGGHHHHHHHHHTTEEEESSCCCHHHHHHHHHHSSSEEEECSS--SEEEEEEEEETTE----
T ss_pred HHHhhhhhchhHHHHHhccCcHHHHHHHHHhcEeCCcceEcHHHHhhhccCCCeeeeeccC--CcEEEEEEecCCE----
Confidence 996431 1 245 8999999998 2357788864211 1 1488985 5677765 4666
Q ss_pred ceEEc----cEEEecCceeecCCeEEEEec-CcCCCCCCC
Q 041188 333 PLRIN----YVRVKVPDVMKNLKIVVHGIY-LPFPHLHPA 367 (409)
Q Consensus 333 ~l~VN----~a~Vv~pDi~~~~~~VVHgId-~l~p~~~~~ 367 (409)
++|| +++|+.+|+.+.| ||||.|| +++|+....
T Consensus 277 -v~v~~~~~~a~v~~~di~~~N-GvIHvID~VL~P~~~~~ 314 (324)
T 1o70_A 277 -YVIIWNYKKINVYRPDVECTN-GIIHVIDYPLLEEKDVV 314 (324)
T ss_dssp -EEEEETTEEEEEEEEEEEETT-EEEEEESSCSCCTTTTC
T ss_pred -EEEEecCceeEEEEcccccCC-CeEEEeceeecCCcccc
Confidence 8888 7999999998866 6899999 666765433
No 2
>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A
Probab=99.87 E-value=1.3e-23 Score=183.81 Aligned_cols=119 Identities=29% Similarity=0.430 Sum_probs=98.7
Q ss_pred hHHHHHHhc-CcHHHHHHhhccCcccccccCCCCeEEEeeCChhhhcCCCC------------ChhHHhhhcccCCccch
Q 041188 62 MLAPILSHL-GFNELATAAPSLSNDAVATSWSGPSTLFAPSDSSLHTCFSC------------SVPSLLREHLVPGLFTI 128 (409)
Q Consensus 62 ~l~~~L~~~-Gft~la~lL~~~~~~~~~l~~~g~~TIFAPtD~AF~~l~~~------------~L~~LL~yHVvpg~~~~ 128 (409)
++.++|++. .|++|+.+|+++++. +.+.+.+++|||||+|+||++++.. .++++|+|||+||++..
T Consensus 4 ~i~~~l~~~~~~s~f~~~l~~agl~-~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~~~l~~lL~yHvv~~~~~~ 82 (137)
T 1w7d_A 4 DIVETATGAGSFTTLLTAAEAAGLV-DTLKGDGPFTVFAPTDAAFAALPEGTVEDLLKPENKEKLTEILTYHVVPGEVMS 82 (137)
T ss_dssp TTGGGGGSCSSSTTTTHHHHHTTTH-HHHTSSSCEEEECCCHHHHTTSTTTHHHHTTSHHHHHHHHHHHHHHEEESCCCT
T ss_pred CHHHHHHhCCCHHHHHHHHHHcCCH-HHHcCCCCEEEEEECHHHHHHcCHhHHHHHhCcCCHHHHHHHHHhhEeCcEEcH
Confidence 456667654 499999999999844 5566679999999999999998642 36789999999999999
Q ss_pred HHHhcccCCCeeeccCCCceEEEeeCCCCccccceEEEccEEEeCcccc-cCCceEEEEecCccCCC
Q 041188 129 DYLRKLAFGTKIESLSPGRCITITSSKSENDTVSKVFIGGVEITHPDLF-NNGIIIIHGIQGYISPL 194 (409)
Q Consensus 129 ~~L~~l~~g~~i~Tll~g~~L~Vt~~~~~~~~~~~v~Vnga~Vt~~Di~-~ng~~VIH~ID~VL~P~ 194 (409)
++|.+ +..++|+ .|..+.|+..+ + ++|||++|+.+|+. .|| |||+||+||.|+
T Consensus 83 ~~l~~---~~~~~tl-~G~~l~v~~~~------g-v~vn~a~v~~~di~~~NG--vIHvID~VL~P~ 136 (137)
T 1w7d_A 83 SDLTE---GMTAETV-EGGALTVTLEG------G-PKVNGVSISQPDVDASNG--VIHVIDGVLMPG 136 (137)
T ss_dssp TTSCS---SEEEECT-TSCEEEEECTT------S-CEETTEECSBCCCBCSSS--EEEBCSSCCSSC
T ss_pred HHhcC---CCeeecc-CCceEEEEecC------C-EEEeCcEEEECCeecCCe--EEEEECeeeCCC
Confidence 99975 5567775 68889998764 5 99999999999996 566 999999999997
No 3
>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A
Probab=99.85 E-value=3.7e-22 Score=173.56 Aligned_cols=118 Identities=19% Similarity=0.321 Sum_probs=98.2
Q ss_pred hHHHHHHhcC-cHHHHHHhhccCcccccccCCCCeEEEeeCChhhhcCCC----------CChhHHhhhcccCCccchHH
Q 041188 62 MLAPILSHLG-FNELATAAPSLSNDAVATSWSGPSTLFAPSDSSLHTCFS----------CSVPSLLREHLVPGLFTIDY 130 (409)
Q Consensus 62 ~l~~~L~~~G-ft~la~lL~~~~~~~~~l~~~g~~TIFAPtD~AF~~l~~----------~~L~~LL~yHVvpg~~~~~~ 130 (409)
++.++|++.+ |++|+.+++++++. +.+.+.+++|||||+|+||++++. ..++++|+|||+|+.+..++
T Consensus 3 ti~~~l~~~~~fs~~~~~l~~agl~-~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~l~~iL~yHvv~~~~~~~~ 81 (132)
T 2vxp_A 3 TVMDVLKGDNRFSMLVAAIQSAGLT-ETLNREGVYTVFAPTNEAFRALPPRERSRLLGDAKELANILKYHIGDEILVSGG 81 (132)
T ss_dssp CHHHHHTTSTTCHHHHHHHHHHTCH-HHHHSSCCEEEEEECHHHHHHSCHHHHHHHHTCHHHHHHHHHHSBBSSCCCSTT
T ss_pred cHHHHHHcCCCHHHHHHHHHHcCcH-HHHcCCCCEEEEeECHHHHHhhCHHHHHHHhcCHHHHHHHHHhcCcCceeehhh
Confidence 5778888754 99999999999955 556678999999999999999863 24789999999999998888
Q ss_pred HhcccCCCeeeccCCCceEEEeeCCCCccccceEEEccEEEeCcccc-cCCceEEEEecCccC
Q 041188 131 LRKLAFGTKIESLSPGRCITITSSKSENDTVSKVFIGGVEITHPDLF-NNGIIIIHGIQGYIS 192 (409)
Q Consensus 131 L~~l~~g~~i~Tll~g~~L~Vt~~~~~~~~~~~v~Vnga~Vt~~Di~-~ng~~VIH~ID~VL~ 192 (409)
|.. +..++|+ .|..+.|+..+ +.++||+++|+.+|+. .|| |||+||+||.
T Consensus 82 l~~---~~~~~tl-~G~~l~v~~~~------~~v~vn~a~v~~~di~a~NG--vIHvID~VLl 132 (132)
T 2vxp_A 82 IGA---LVRLKSL-QGDKLEVSLKN------NVVSVNKEPVAEPDIMATNG--VVHVITNVLQ 132 (132)
T ss_dssp CSS---CEEEEBT-TSSEEEEEEET------TEEEESSCBEEEEEEEETTE--EEEEESSCC-
T ss_pred ccC---CceEecC-CCCEEEEEEeC------CEEEEeccEEEEcceecCCE--EEEEECcEeC
Confidence 864 5577886 68889998765 5799999999999996 455 9999999984
No 4
>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1
Probab=99.84 E-value=1.3e-21 Score=176.54 Aligned_cols=120 Identities=18% Similarity=0.228 Sum_probs=100.4
Q ss_pred hhhHHHHHHhcC-cHHHHHHhh-----ccCcccccccCCCCeEEEeeCChhhhcCCC----------CChhHHhhhcccC
Q 041188 60 TAMLAPILSHLG-FNELATAAP-----SLSNDAVATSWSGPSTLFAPSDSSLHTCFS----------CSVPSLLREHLVP 123 (409)
Q Consensus 60 ~~~l~~~L~~~G-ft~la~lL~-----~~~~~~~~l~~~g~~TIFAPtD~AF~~l~~----------~~L~~LL~yHVvp 123 (409)
..++.++|++.+ |++|+.+|+ .+++. +.+...+ +|||||+|+||++++. ..|+++|+|||++
T Consensus 27 ~~~i~~~l~~~~~~s~f~~~l~~~~~~~agl~-~~L~~~g-~TvFAPtn~AF~~l~~~~~~~L~~~~~~L~~iL~yHvv~ 104 (163)
T 1nyo_A 27 QDPVAVAASNNPELTTLTAALSGQLNPQVNLV-DTLNSGQ-YTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVVA 104 (163)
T ss_dssp HSCHHHHHTTSTTTHHHHHHHHSSSCTTCCCH-HHHTSSS-EEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHHHTEEE
T ss_pred CcCHHHHHHhCCCHHHHHHHHHhccccccCHH-HHhCCCC-cEEEEECHHHHHhccHHHHHHHhcCHHHHHHHHHhceEC
Confidence 456888888765 999999999 88854 4566667 9999999999998852 4578999999999
Q ss_pred CccchHHHhcccCCCeeeccCCCceEEEeeCCCCccccceEEEccEEEeCcccccCCceEEEEecCccCCC
Q 041188 124 GLFTIDYLRKLAFGTKIESLSPGRCITITSSKSENDTVSKVFIGGVEITHPDLFNNGIIIIHGIQGYISPL 194 (409)
Q Consensus 124 g~~~~~~L~~l~~g~~i~Tll~g~~L~Vt~~~~~~~~~~~v~Vnga~Vt~~Di~~ng~~VIH~ID~VL~P~ 194 (409)
+++..++|. | .++|+ .|+.|+|+..+ +.++||+++|+.+|+.. .++|||+||+||.|+
T Consensus 105 g~~~~~~l~----g-~~~Tl-~G~~l~v~~~~------~~v~vn~a~V~~~di~a-~NGvIHvID~VL~P~ 162 (163)
T 1nyo_A 105 GQTSPANVV----G-TRQTL-QGASVTVTGQG------NSLKVGNADVVCGGVST-ANATVYMIDSVLMPP 162 (163)
T ss_dssp SCCCTTTSC----E-EEECT-TSSEEEEEECS------SCEEETTEECSSBCCCC-SSEEEBCBSSCCCCC
T ss_pred CEEcHHHhC----C-ccccC-CCCEEEEEEEC------CEEEEeccEEEECceEc-CCEEEEEECcEeCCC
Confidence 999999996 2 67886 68889998765 57999999999999963 334999999999996
No 5
>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A
Probab=99.78 E-value=1.5e-19 Score=156.99 Aligned_cols=114 Identities=25% Similarity=0.289 Sum_probs=91.2
Q ss_pred HHHHHHh-cChhHHHHHHHH-hH-HHHhccCCcEEEecCccccccCC----------cccc-ccceeeeecCcccChhhh
Q 041188 237 AMLRLRN-NGYSILSLAMKV-KY-QELINLANMTVFALDDVSIFSGS----------YTYI-SNVRFHIIPNRYLTIGDL 302 (409)
Q Consensus 237 ~~~~L~~-~gfs~~a~lL~~-~l-~~l~~~~~~TVFAPtD~Af~~~~----------~~~l-~iL~yHVVpg~~L~~~dL 302 (409)
+++.|+. ..|+.|..+++. .+ +.+...++||||||+|+||..+. .+.+ ++|+|||+|+. ++.+++
T Consensus 4 i~~~l~~~~~fs~~~~~l~~agl~~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~l~~iL~yHvv~~~-~~~~~l 82 (132)
T 2vxp_A 4 VMDVLKGDNRFSMLVAAIQSAGLTETLNREGVYTVFAPTNEAFRALPPRERSRLLGDAKELANILKYHIGDEI-LVSGGI 82 (132)
T ss_dssp HHHHHTTSTTCHHHHHHHHHHTCHHHHHSSCCEEEEEECHHHHHHSCHHHHHHHHTCHHHHHHHHHHSBBSSC-CCSTTC
T ss_pred HHHHHHcCCCHHHHHHHHHHcCcHHHHcCCCCEEEEeECHHHHHhhCHHHHHHHhcCHHHHHHHHHhcCcCce-eehhhc
Confidence 5666665 569999999975 35 55777789999999999996652 2344 78999999998 466665
Q ss_pred ccCCCCcccccccCCceEEEEEcCCcccccceEEccEEEecCceeecCCeEEEEecCcC
Q 041188 303 ERLPVGTTLPTLARGQSLTVTTAGGASVTAPLRINYVRVKVPDVMKNLKIVVHGIYLPF 361 (409)
Q Consensus 303 ~~l~~g~~l~TLl~g~~L~vt~~~g~~~~~~l~VN~a~Vv~pDi~~~~~~VVHgId~l~ 361 (409)
..+..++|+ .|+.|.|+..+|. ++||+++|+.+|+..+| ||||+||.++
T Consensus 83 ---~~~~~~~tl-~G~~l~v~~~~~~-----v~vn~a~v~~~di~a~N-GvIHvID~VL 131 (132)
T 2vxp_A 83 ---GALVRLKSL-QGDKLEVSLKNNV-----VSVNKEPVAEPDIMATN-GVVHVITNVL 131 (132)
T ss_dssp ---SSCEEEEBT-TSSEEEEEEETTE-----EEESSCBEEEEEEEETT-EEEEEESSCC
T ss_pred ---cCCceEecC-CCCEEEEEEeCCE-----EEEeccEEEEcceecCC-EEEEEECcEe
Confidence 456788998 6788999988777 99999999999998765 6899999664
No 6
>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A
Probab=99.76 E-value=8.2e-20 Score=159.65 Aligned_cols=114 Identities=26% Similarity=0.349 Sum_probs=87.9
Q ss_pred HHHHH-hcChhHHHHHHHH-hH-HHHhccCCcEEEecCccccccCC------------cccc-ccceeeeecCcccChhh
Q 041188 238 MLRLR-NNGYSILSLAMKV-KY-QELINLANMTVFALDDVSIFSGS------------YTYI-SNVRFHIIPNRYLTIGD 301 (409)
Q Consensus 238 ~~~L~-~~gfs~~a~lL~~-~l-~~l~~~~~~TVFAPtD~Af~~~~------------~~~l-~iL~yHVVpg~~L~~~d 301 (409)
++.|+ ..+|+.|..+++. .+ +.+...+++|||||+|+||.... .+.+ ++|+|||+|++ ++.++
T Consensus 6 ~~~l~~~~~~s~f~~~l~~agl~~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~~~l~~lL~yHvv~~~-~~~~~ 84 (137)
T 1w7d_A 6 VETATGAGSFTTLLTAAEAAGLVDTLKGDGPFTVFAPTDAAFAALPEGTVEDLLKPENKEKLTEILTYHVVPGE-VMSSD 84 (137)
T ss_dssp GGGGGSCSSSTTTTHHHHHTTTHHHHTSSSCEEEECCCHHHHTTSTTTHHHHTTSHHHHHHHHHHHHHHEEESC-CCTTT
T ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHcCCCCEEEEEECHHHHHHcCHhHHHHHhCcCCHHHHHHHHHhhEeCcE-EcHHH
Confidence 34444 3468888888875 35 55777789999999999997652 2334 78999999999 57777
Q ss_pred hccCCCCcccccccCCceEEEEEcCCcccccceEEccEEEecCceeecCCeEEEEec-CcCCC
Q 041188 302 LERLPVGTTLPTLARGQSLTVTTAGGASVTAPLRINYVRVKVPDVMKNLKIVVHGIY-LPFPH 363 (409)
Q Consensus 302 L~~l~~g~~l~TLl~g~~L~vt~~~g~~~~~~l~VN~a~Vv~pDi~~~~~~VVHgId-~l~p~ 363 (409)
|. .|..++|+ .|+.|.|+..+ + ++||+++|+.+|+..+| ||||+|| +++|+
T Consensus 85 l~---~~~~~~tl-~G~~l~v~~~~-g-----v~vn~a~v~~~di~~~N-GvIHvID~VL~P~ 136 (137)
T 1w7d_A 85 LT---EGMTAETV-EGGALTVTLEG-G-----PKVNGVSISQPDVDASN-GVIHVIDGVLMPG 136 (137)
T ss_dssp SC---SSEEEECT-TSCEEEEECTT-S-----CEETTEECSBCCCBCSS-SEEEBCSSCCSSC
T ss_pred hc---CCCeeecc-CCceEEEEecC-C-----EEEeCcEEEECCeecCC-eEEEEECeeeCCC
Confidence 74 57788898 67889998653 2 89999999999998776 5899999 66675
No 7
>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1
Probab=99.74 E-value=1.2e-18 Score=156.94 Aligned_cols=115 Identities=23% Similarity=0.279 Sum_probs=92.2
Q ss_pred HHHHHHHHh-cChhHHHHHHH-----H-hH-HHHhccCCcEEEecCccccccCC----------cccc-ccceeeeecCc
Q 041188 235 RDAMLRLRN-NGYSILSLAMK-----V-KY-QELINLANMTVFALDDVSIFSGS----------YTYI-SNVRFHIIPNR 295 (409)
Q Consensus 235 ~~~~~~L~~-~gfs~~a~lL~-----~-~l-~~l~~~~~~TVFAPtD~Af~~~~----------~~~l-~iL~yHVVpg~ 295 (409)
+++++.|++ ..|+.|..+|+ . .+ +.+...+ +|||||+|+||..+. .+.+ ++|+|||||++
T Consensus 28 ~~i~~~l~~~~~~s~f~~~l~~~~~~~agl~~~L~~~g-~TvFAPtn~AF~~l~~~~~~~L~~~~~~L~~iL~yHvv~g~ 106 (163)
T 1nyo_A 28 DPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLNSGQ-YTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVVAGQ 106 (163)
T ss_dssp SCHHHHHTTSTTTHHHHHHHHSSSCTTCCCHHHHTSSS-EEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHHHTEEESC
T ss_pred cCHHHHHHhCCCHHHHHHHHHhccccccCHHHHhCCCC-cEEEEECHHHHHhccHHHHHHHhcCHHHHHHHHHhceECCE
Confidence 456777765 56999999998 5 34 5577667 999999999996652 2444 79999999999
Q ss_pred ccChhhhccCCCCcccccccCCceEEEEEcCCcccccceEEccEEEecCceeecCCeEEEEec-CcCCC
Q 041188 296 YLTIGDLERLPVGTTLPTLARGQSLTVTTAGGASVTAPLRINYVRVKVPDVMKNLKIVVHGIY-LPFPH 363 (409)
Q Consensus 296 ~L~~~dL~~l~~g~~l~TLl~g~~L~vt~~~g~~~~~~l~VN~a~Vv~pDi~~~~~~VVHgId-~l~p~ 363 (409)
++.++|. | .++|+ .|+.|.|+..++. ++||+++|+.+|+...| ||||.|| +++|+
T Consensus 107 -~~~~~l~----g-~~~Tl-~G~~l~v~~~~~~-----v~vn~a~V~~~di~a~N-GvIHvID~VL~P~ 162 (163)
T 1nyo_A 107 -TSPANVV----G-TRQTL-QGASVTVTGQGNS-----LKVGNADVVCGGVSTAN-ATVYMIDSVLMPP 162 (163)
T ss_dssp -CCTTTSC----E-EEECT-TSSEEEEEECSSC-----EEETTEECSSBCCCCSS-EEEBCBSSCCCCC
T ss_pred -EcHHHhC----C-ccccC-CCCEEEEEEECCE-----EEEeccEEEECceEcCC-EEEEEECcEeCCC
Confidence 5878873 4 68898 6888999988777 99999999999998754 6999999 55575
No 8
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1
Probab=99.69 E-value=2e-17 Score=163.18 Aligned_cols=134 Identities=17% Similarity=0.174 Sum_probs=101.9
Q ss_pred cCCchhhhHHHHHHhcC-cHHHHHHhhccCcccccccCCCCeEEEeeCChhhhcCC------------C---CChhHHhh
Q 041188 55 SFFSHTAMLAPILSHLG-FNELATAAPSLSNDAVATSWSGPSTLFAPSDSSLHTCF------------S---CSVPSLLR 118 (409)
Q Consensus 55 ~~~s~~~~l~~~L~~~G-ft~la~lL~~~~~~~~~l~~~g~~TIFAPtD~AF~~l~------------~---~~L~~LL~ 118 (409)
.+.++..++.+.|++.+ |+.|..+++.+++.+.+....+++|||||+|+||+++. . +.++++|+
T Consensus 153 VL~pp~~ti~~~l~~~~~fs~~~~~l~~~gl~~~L~~~~~~~TvFAPtd~Af~~l~~~~~~~~~~~l~~~~~~~l~~iL~ 232 (324)
T 1o70_A 153 VLGVPYTTVLGKLESDPMMSDTYKMGKFSHFNDQLNNTQRRFTYFVPRDKGWQKTELDYPSAHKKLFMADFSYHSKSILE 232 (324)
T ss_dssp CTTSCCSCHHHHHHHCGGGHHHHHHTTTTTTTGGGGCSSSEEEEEEECHHHHHHHHHHCHHHHHHHTSGGGHHHHHHHHH
T ss_pred hhhhchhhHHHHhhcCchHHHHHHHHHhhCHHHHhCCCCCCeEEEEeChHHHHhhhhhchhHHHHHhccCcHHHHHHHHH
Confidence 34454557899998865 99999999999965443335789999999999999862 1 25789999
Q ss_pred hcccCC--ccchHHHhcccC--C-CeeeccCCCceEEEeeCCCCccccceEEEc----cEEEeCcccc-cCCceEEEEec
Q 041188 119 EHLVPG--LFTIDYLRKLAF--G-TKIESLSPGRCITITSSKSENDTVSKVFIG----GVEITHPDLF-NNGIIIIHGIQ 188 (409)
Q Consensus 119 yHVvpg--~~~~~~L~~l~~--g-~~i~Tll~g~~L~Vt~~~~~~~~~~~v~Vn----ga~Vt~~Di~-~ng~~VIH~ID 188 (409)
|||+|+ .|+.++|.+... + ..++|+. ..+.|+... .++.++|| +++|+.+|+. .|| |||+||
T Consensus 233 yHvv~~~~~~~~~~l~~~~~~~~~~~~~Tl~--~~l~v~~~~----~~~~v~v~~~~~~a~v~~~di~~~NG--vIHvID 304 (324)
T 1o70_A 233 RHLAISDKEYTMKDLVKFSQESGSVILPTFR--DSLSIRVEE----EAGRYVIIWNYKKINVYRPDVECTNG--IIHVID 304 (324)
T ss_dssp TTEEEESSCCCHHHHHHHHHHSSSEEEECSS--SEEEEEEEE----ETTEEEEEETTEEEEEEEEEEEETTE--EEEEES
T ss_pred hcEeCCcceEcHHHHhhhccCCCeeeeeccC--CcEEEEEEe----cCCEEEEEecCceeEEEEcccccCCC--eEEEec
Confidence 999999 999899986421 1 1478875 567776431 02568887 7999999997 465 999999
Q ss_pred CccCCCCC
Q 041188 189 GYISPLSP 196 (409)
Q Consensus 189 ~VL~P~~~ 196 (409)
+||.|+..
T Consensus 305 ~VL~P~~~ 312 (324)
T 1o70_A 305 YPLLEEKD 312 (324)
T ss_dssp SCSCCTTT
T ss_pred eeecCCcc
Confidence 99999853
No 9
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=8.76 E-value=1.8e+02 Score=18.96 Aligned_cols=19 Identities=16% Similarity=0.314 Sum_probs=12.0
Q ss_pred chhhHHHHHHHHHHHHhhc
Q 041188 6 TSLRFLTILAIYLLIITKS 24 (409)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (409)
.-++++++++++...|+++
T Consensus 5 ~~l~~v~~~~ifYFl~iRP 23 (37)
T 2rdd_B 5 LILMLVVFGLIFYFMILRP 23 (37)
T ss_dssp HHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3456777777766666654
No 10
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=8.73 E-value=2.1e+02 Score=25.19 Aligned_cols=106 Identities=14% Similarity=0.196 Sum_probs=53.2
Q ss_pred HHHhhccCcccccccCCCCeEEEeeCChh-hhcCCC-CChhHHhhhcccCCccchHHHhcccCCCeee----ccCCCceE
Q 041188 76 ATAAPSLSNDAVATSWSGPSTLFAPSDSS-LHTCFS-CSVPSLLREHLVPGLFTIDYLRKLAFGTKIE----SLSPGRCI 149 (409)
Q Consensus 76 a~lL~~~~~~~~~l~~~g~~TIFAPtD~A-F~~l~~-~~L~~LL~yHVvpg~~~~~~L~~l~~g~~i~----Tll~g~~L 149 (409)
-.+|+..|+. +....+.+-|+.|.+.- |-++.. +.+...|.|++-+|......-..-+ ...+. ...+.++.
T Consensus 43 ~~~l~~~gi~--~~~~~~~~gv~~~~~~PhLvnLn~Dp~ls~~l~y~L~~g~t~VGr~~~~~-~~dI~L~G~~I~~~Hc~ 119 (184)
T 4egx_A 43 EALLAEMGVA--MREDGGTLGVFSPKKTPHLVNLNEDPLMSECLLYYIKDGITRVGREDGER-RQDIVLSGHFIKEEHCV 119 (184)
T ss_dssp HHHHHHTTEE--EETTTEEEEEECCSSSCEEEECCCCTTCSSCSEEECCSEEEEEECSSSSS-CCSEECCSTTCCSEEEE
T ss_pred HHHHHHcCcc--hhhcccccceecCCCCceEEeccCCcccCceEEEEECCCcCcCCCCCcCC-CCeEEECccccccccEE
Confidence 3445555522 12222346788888765 456654 4567899999988765443211000 00011 01122332
Q ss_pred -EEeeCCC----Cc---cccceEEEccEEEeCcccccCCceEE
Q 041188 150 -TITSSKS----EN---DTVSKVFIGGVEITHPDLFNNGIIII 184 (409)
Q Consensus 150 -~Vt~~~~----~~---~~~~~v~Vnga~Vt~~Di~~ng~~VI 184 (409)
+....++ +. ..+..++|||..|+.+-....|+.|+
T Consensus 120 i~~~~~~~~~~~vtl~p~~~a~t~VNG~~I~~~~~L~~GDrI~ 162 (184)
T 4egx_A 120 FRSDSRGGSEAVVTLEPCEGADTYVNGKKVTEPSILRSGNRII 162 (184)
T ss_dssp EEEECCSSCSCEEEEEECTTCCEEETTEECCSCEECCTTCEEE
T ss_pred EEEcCCCCceEEEEEeeCCCCeEEEcCEEccccEEcCCCCEEE
Confidence 1111111 00 11347999999998875556775454
Done!