BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041189
(635 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PFT|A Chain A, The Crystal Structure Of Mouse Exo70 Reveals Unique
Features Of The Mammalian Exocyst
Length = 571
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 105/482 (21%), Positives = 207/482 (42%), Gaps = 60/482 (12%)
Query: 189 EEASVDLIEPAAVDDLKQIADRMIRSGYEKECFQVYSNIRRGALDECLAILGVEKLSMEE 248
E+ ++ + + + D+ +I+ ++ G ++ VY IR LD + L
Sbjct: 102 EDVVLEHLPESVLRDVVRISRWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRKSSS 161
Query: 249 VQKVEWSS-----------------------LDEKMKKWIQAVKIAGKLLLSGEKKLCDH 285
V +S LD + +I V KL S E +L
Sbjct: 162 SSGVPYSPAIPNKRKDTPTKKPIKRPGRDDMLDVETDAYIHCVSAFVKLAQS-EYRLLME 220
Query: 286 IFSEAETLGDDCFNETAKGCVKPLLIFAEAV------AIGKRSSEKLFRILDMYDALADV 339
I E F+ + + L++ E + AI + + + + L
Sbjct: 221 IIPEHHQ--KKTFDSLIQDALDGLMLEGENIVSAARKAIIRHDFSTVLTVFPILRHLKQT 278
Query: 340 LPNLEAMI--TSELVCSEVWGVLNALGEAAKGTFAEFENAVQSETSKK---PMQGGEIHP 394
P + ++ T+ +++ G++ ++ +F + ++++ K+ P + G +H
Sbjct: 279 KPEFDQVLQGTAASTKNKLPGLITSMETIGAKALEDFADNIKNDPDKEYNMP-KDGTVHE 337
Query: 395 LTRYVMNYVKLLVDYSDTLNKLLEHDEIDTGSLQIDADSLESMSPIARRLLLLITC---- 450
LT + +++ L+D+ +T +L S + + + S ++RLL C
Sbjct: 338 LTSNAILFLQQLLDFQETAGAML-------ASQETSSSATSYSSEFSKRLLSTYICKVLG 390
Query: 451 -LESNIEEKSRLYDDSAMQYIFLMNNILYIVQKVKDSELGKLLG---DNWVRKRRGQVRQ 506
L+ N+ KS++Y+D A+ IFL NN YI++ ++ SEL +L+ R R + Q
Sbjct: 391 NLQLNLLSKSKVYEDPALSAIFLHNNYNYILKSLEKSELIQLVAVTQKTAERSYREHIEQ 450
Query: 507 YATSYLRASWSKALACLKDEGI-----GGGSTNASKVTLKERFRSFNLCFEEIYRVQTAW 561
+Y R SW K + ++ + G + + +KERF+ FN EE+ ++Q W
Sbjct: 451 QIQTYQR-SWLKVTDYIAEKNLPVFQPGVKLRDKERQMIKERFKGFNDGLEELCKIQKVW 509
Query: 562 KVPDPQLREELRISISEKVIPAYRSFMGRFRSQLESGRHAGKYIKYTPEDLESYLLDLFE 621
+PD + R+++R + + V Y +F+ R+ S + ++ KYIKY E + + LF+
Sbjct: 510 AIPDTEQRDKIRQAQKDIVKETYGAFLHRYGS-VPFTKNPEKYIKYRVEQVGDMIDRLFD 568
Query: 622 GS 623
S
Sbjct: 569 TS 570
>pdb|2B1E|A Chain A, The Structures Of Exocyst Subunit Exo70p And The Exo84p C-
Terminal Domains Reveal A Common Motif
Length = 564
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 8/153 (5%)
Query: 470 IFLMNNILYIVQKVKDSELGKLL-GDNWVRKRRGQVRQYATSYLRASWSKALACLKDEGI 528
F++ N+ + Q V+ SEL +L G+ R R +++ SY+ + W A L D
Sbjct: 415 FFILMNLTLVEQIVEKSELNLMLAGEGHSRLER--LKKRYISYMVSDWRDLTANLMDSVF 472
Query: 529 --GGGSTNASKVTLKERFRSFNLCFEEIYRVQTAWKVPDPQLREELRISISEKVIPAYRS 586
G + K +KE+FR FN FE++ +K+ DP L+ L+ I V+P Y
Sbjct: 473 IDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYER 532
Query: 587 FMGRFRSQLESGRHAGKYIKYTPEDLESYLLDL 619
F R++ ++ R K+IKYTP++L + L L
Sbjct: 533 FYSRYKDSFKNPR---KHIKYTPDELTTVLNQL 562
>pdb|2PFV|A Chain A, S. Cerevisiae Exo70 With Additional Residues To 2.1
Angrstrom Resolution
Length = 563
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 8/153 (5%)
Query: 470 IFLMNNILYIVQKVKDSELGKLL-GDNWVRKRRGQVRQYATSYLRASWSKALACLKDEGI 528
F++ N+ + Q V+ SEL +L G+ R R +++ SY+ + W A L D
Sbjct: 414 FFILMNLTLVEQIVEKSELNLMLAGEGHSRLER--LKKRYISYMVSDWRDLTANLMDSVF 471
Query: 529 --GGGSTNASKVTLKERFRSFNLCFEEIYRVQTAWKVPDPQLREELRISISEKVIPAYRS 586
G + K +KE+FR FN FE++ +K+ DP L+ L+ I V+P Y
Sbjct: 472 IDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYER 531
Query: 587 FMGRFRSQLESGRHAGKYIKYTPEDLESYLLDL 619
F R++ ++ R K+IKYTP++L + L L
Sbjct: 532 FYSRYKDSFKNPR---KHIKYTPDELTTVLNQL 561
>pdb|2B7M|A Chain A, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|B Chain B, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|C Chain C, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|D Chain D, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
Length = 566
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 8/153 (5%)
Query: 470 IFLMNNILYIVQKVKDSELG-KLLGDNWVRKRRGQVRQYATSYLRASWSKALACLKDEGI 528
F++ N+ + Q V+ SEL L G+ R R +++ SY + W A L D
Sbjct: 417 FFILXNLTLVEQIVEKSELNLXLAGEGHSRLER--LKKRYISYXVSDWRDLTANLXDSVF 474
Query: 529 --GGGSTNASKVTLKERFRSFNLCFEEIYRVQTAWKVPDPQLREELRISISEKVIPAYRS 586
G + K +KE+FR FN FE++ +K+ DP L+ L+ I V P Y
Sbjct: 475 IDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVXPXYER 534
Query: 587 FMGRFRSQLESGRHAGKYIKYTPEDLESYLLDL 619
F R++ ++ R K+IKYTP++L + L L
Sbjct: 535 FYSRYKDSFKNPR---KHIKYTPDELTTVLNQL 564
>pdb|2OHH|A Chain A, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Active Oxidized State
pdb|2OHH|B Chain B, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Active Oxidized State
pdb|2OHH|D Chain D, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Active Oxidized State
pdb|2OHH|E Chain E, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Active Oxidized State
pdb|2OHI|A Chain A, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Reduced State
pdb|2OHI|B Chain B, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Reduced State
pdb|2OHI|D Chain D, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Reduced State
pdb|2OHI|E Chain E, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Reduced State
pdb|2OHI|G Chain G, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Reduced State
pdb|2OHI|H Chain H, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Reduced State
pdb|2OHI|I Chain I, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Reduced State
pdb|2OHI|J Chain J, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Reduced State
pdb|2OHJ|A Chain A, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Inactive Oxidized State
pdb|2OHJ|B Chain B, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Inactive Oxidized State
pdb|2OHJ|D Chain D, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Inactive Oxidized State
pdb|2OHJ|E Chain E, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Inactive Oxidized State
Length = 404
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 85 FNEFIGAVDDILRLIDNLSVGSDNEVMDRAETAI-QAAMSRLEDDFRHLLISNTIPLDAD 143
+N ++ D+ + LIDN G+ +E+M R E A+ Q M R++ +I N + D
Sbjct: 35 YNAYLVCGDEGVALIDNSYPGTFDELMARVEDALQQVGMERVD-----YIIQNHVEKDHS 89
Query: 144 GLYGSMRR 151
G+ + R
Sbjct: 90 GVLVELHR 97
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 16/113 (14%)
Query: 188 GEEASVDLIEPAAVDDLKQIADRMIRSG---------YEKECFQVYSNIRRGAL------ 232
GEE +D+++ A ++D I D RSG E E F + R L
Sbjct: 52 GEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEE 111
Query: 233 DECLAILGVEKLSMEEVQKVEWSSLDEKMKKW-IQAVKIAGKLLLSGEKKLCD 284
D+ ++ K +EE ++V K ++W +Q V+ + K + +K D
Sbjct: 112 DKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFD 164
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 16/113 (14%)
Query: 188 GEEASVDLIEPAAVDDLKQIADRMIRSG---------YEKECFQVYSNIRRGAL------ 232
GEE +D+++ A ++D I D RSG E E F + R L
Sbjct: 48 GEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEE 107
Query: 233 DECLAILGVEKLSMEEVQKVEWSSLDEKMKKW-IQAVKIAGKLLLSGEKKLCD 284
D+ ++ K +EE ++V K ++W +Q V+ + K + +K D
Sbjct: 108 DKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFD 160
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 188 GEEASVDLIEPAAVDDLKQIADRMIRSG---------YEKECFQVYSNIRRGAL----DE 234
GEE +D+++ A ++D I D RSG E E F ++ R L DE
Sbjct: 51 GEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE 110
Query: 235 CLAILGV-EKLSMEEVQKVEWSSLDEKMKKW-IQAVKIAGKLLLSGEKKLCD 284
+ L V K +E+ ++V + ++W + V+ + K + +K D
Sbjct: 111 NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD 162
>pdb|3L6B|A Chain A, X-Ray Crystal Structure Of Human Serine Racemase In
Complex Malonate A Potent Inhibitor
Length = 346
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 286 IFSEAETLGDDCFNETAKGCVKPLLIFAEAVAIGKRSSEKLFRILDMYDALADVLPNLEA 345
+++ + DDC+ KG + P L E +A G +SS L+ + + D++ ++
Sbjct: 206 VYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSSIG----LNTWPIIRDLVDDIFT 261
Query: 346 MITSELVCSE--VWGVLNALGEAAKG 369
+ E+ C+ VW + L E G
Sbjct: 262 VTEDEIKCATQLVWERMKLLIEPTAG 287
>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|F Chain F, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|I Chain I, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|L Chain L, Structure Of The Haptoglobin-Haemoglobin Complex
Length = 347
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 232 LDECLAILGVEKLSMEEVQKVEWSSLDEKMKKWIQAVKIAGKLLLSG 278
L EC A+ G K +++VQ++ SLD K QA I+ L SG
Sbjct: 83 LPECEAVCGKPKNPVDQVQRIMGGSLDAKGSFPWQAKMISHHNLTSG 129
>pdb|3L6R|A Chain A, The Structure Of Mammalian Serine Racemase: Evidence For
Conformational Changes Upon Inhibitor Binding
Length = 346
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 286 IFSEAETLGDDCFNETAKGCVKPLLIFAEAVAIGKRSSEKLFRILDMYDALADVLPNLEA 345
+++ + DDC+ KG + P L E +A G +SS L+ + + D++ ++
Sbjct: 206 VYAAEPSNADDCYQSKLKGKLXPNLYPPETIADGVKSSIG----LNTWPIIRDLVDDIFT 261
Query: 346 MITSELVCSE--VWGVLNALGEAAKG 369
+ E+ C+ VW L E G
Sbjct: 262 VTEDEIKCATQLVWERXKLLIEPTAG 287
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,523,120
Number of Sequences: 62578
Number of extensions: 767533
Number of successful extensions: 2095
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2081
Number of HSP's gapped (non-prelim): 21
length of query: 635
length of database: 14,973,337
effective HSP length: 105
effective length of query: 530
effective length of database: 8,402,647
effective search space: 4453402910
effective search space used: 4453402910
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)