Query 041189
Match_columns 635
No_of_seqs 235 out of 491
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 04:39:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041189.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041189hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2344 Exocyst component prot 100.0 2E-116 5E-121 986.3 58.0 599 11-629 6-621 (623)
2 PF03081 Exo70: Exo70 exocyst 100.0 3.6E-78 7.8E-83 652.5 26.2 356 261-619 1-371 (371)
3 PF06419 COG6: Conserved oligo 99.2 9E-07 2E-11 102.0 45.8 510 13-616 35-618 (618)
4 KOG1961 Vacuolar sorting prote 98.3 0.0033 7.2E-08 69.6 34.0 377 23-485 82-550 (683)
5 PF04129 Vps52: Vps52 / Sac2 f 98.2 0.0047 1E-07 70.0 33.8 383 16-486 14-485 (508)
6 KOG3758 Uncharacterized conser 98.2 0.023 5.1E-07 63.5 44.5 501 14-616 90-651 (655)
7 PF09763 Sec3_C: Exocyst compl 95.9 5.2 0.00011 47.4 35.9 216 355-588 438-692 (701)
8 PF10191 COG7: Golgi complex c 91.7 36 0.00078 40.9 28.0 131 202-349 201-335 (766)
9 KOG2148 Exocyst protein Sec3 [ 88.4 55 0.0012 37.8 34.2 211 358-593 607-840 (867)
10 PF07393 Sec10: Exocyst comple 87.1 73 0.0016 37.9 21.9 212 34-314 3-246 (710)
11 PF08385 DHC_N1: Dynein heavy 71.4 1E+02 0.0022 35.3 15.6 90 321-417 326-419 (579)
12 KOG1916 Nuclear protein, conta 61.1 45 0.00098 40.0 9.5 51 537-589 1014-1065(1283)
13 PF04136 Sec34: Sec34-like fam 55.6 35 0.00075 32.5 6.5 77 61-137 63-150 (157)
14 COG2733 Predicted membrane pro 55.6 97 0.0021 33.8 10.3 89 508-618 291-383 (415)
15 KOG3821 Heparin sulfate cell s 48.9 35 0.00077 38.6 6.0 71 537-621 97-168 (563)
16 PHA01746 hypothetical protein 45.4 10 0.00022 33.5 1.0 23 583-611 75-97 (131)
17 PF15264 TSSC4: Tumour suppres 45.4 6.3 0.00014 35.5 -0.3 24 590-613 50-73 (115)
18 KOG4514 Uncharacterized conser 37.7 3.1E+02 0.0068 26.7 9.6 23 191-213 117-139 (222)
19 KOG0994 Extracellular matrix g 24.4 2.3E+02 0.005 35.3 7.6 44 84-127 1665-1711(1758)
20 PRK05590 hypothetical protein; 24.2 2.9E+02 0.0062 26.6 7.0 75 274-350 26-124 (166)
21 PF08069 Ribosomal_S13_N: Ribo 24.2 66 0.0014 25.6 2.3 25 597-621 18-42 (60)
22 PF01153 Glypican: Glypican; 24.1 1.9E+02 0.0041 33.4 7.0 70 538-621 90-160 (557)
23 PF15335 CAAP1: Caspase activi 22.2 72 0.0016 25.7 2.2 23 221-243 5-27 (64)
24 TIGR02553 SipD_IpaD_SspD type 21.6 3.4E+02 0.0074 28.7 7.5 35 490-526 115-149 (308)
25 PRK00083 frr ribosome recyclin 20.9 7.9E+02 0.017 24.0 10.5 82 192-283 101-183 (185)
26 KOG4344 Uncharacterized conser 20.4 2.7E+02 0.006 32.3 6.9 66 469-556 968-1037(1121)
No 1
>KOG2344 consensus Exocyst component protein and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-116 Score=986.34 Aligned_cols=599 Identities=46% Similarity=0.740 Sum_probs=504.5
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHHhhhhhhhhhcccccCCCCCCCccHHHHHHHHHhhcCCC--------C-CC-
Q 041189 11 EDRVLATAQQIVKSLNTPKEVREDMLLIFSSFDNRLSNIGELINGDSSGPHSFESAEKIILRHDSNS--------N-WD- 80 (635)
Q Consensus 11 ~~~~~a~~~~i~~sL~~s~~lt~~m~~iL~~fd~rls~l~~~~~~~~~~e~~l~~~e~vi~~~~~~~--------i-~~- 80 (635)
.+..+.....+...+.+.++.+.+ .+++.++..-+.. .+. +.++..++++|.+|+.+. | |.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~s~~~~-----~~~~~~~~~s~~~-~~~---~~~i~~~~~~i~~~~~~~~~~~~~~~i~~~~ 76 (623)
T KOG2344|consen 6 MEKRIFSLNSDVLPLSQEKSQAKN-----LNLDASSNQSEEK-SPK---EATIEQAEEIIEKFLTALNLRSSSKIISFLE 76 (623)
T ss_pred hhhhhhhhhhcccccccccccccc-----cCCCcchhhhcch-hHH---HhhhhhHHHHHHHHhhhcccchhhhhhhccC
Confidence 455556666666666665555555 4455431111100 011 667888888999888743 2 33
Q ss_pred ChhhHHHHHHHHHHHHHHHhhccCCC-C-chHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccccccc
Q 041189 81 SPEEFNEFIGAVDDILRLIDNLSVGS-D-NEVM--DRAETAIQAAMSRLEDDFRHLLISNTIPLDADGLYGSMRRVSLSF 156 (635)
Q Consensus 81 ~~~~~~~yL~av~~l~~~~~~~~~~~-~-~~~l--~~a~~Ll~~am~~Le~EF~~lL~~~s~~~~p~~l~~~~~~~s~~~ 156 (635)
++.++..|+.+|++|+++++++.... . +..+ .++..+++.||.+||+||++||..++.+.+|+.+...++..
T Consensus 77 ~~~e~~~~~~~v~~l~~~l~~l~s~~~~~~~~~~~~~~d~l~~~am~~le~EF~~il~~~r~~~~~~~~~~~~~~~---- 152 (623)
T KOG2344|consen 77 SREEAKNFLSAVNTLQETLQFLVSQNGLQSSKLLKAQADSLLQIAMSRLEKEFRQILENNREELDPERLSVRLRSS---- 152 (623)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHhHHHHHHHHHHHHHHHHHHHHHhcccccchHhhhhccccc----
Confidence 88999999999999999999996322 2 3343 44444999999999999999999999999998876554431
Q ss_pred ccCCCCCCcccccccccCCCCccccccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHCCCchHHHHHHHHhhHHHHHHHH
Q 041189 157 AANDGEIDGEFESFGEVSDGSVRFHERGASLGEEASVDLIEPAAVDDLKQIADRMIRSGYEKECFQVYSNIRRGALDECL 236 (635)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~L~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l~~sL 236 (635)
+...+++ .+............+.. .......++.+|+.++.+|+.||++|+++||.++|+++|..+|+++++++|
T Consensus 153 ---~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~dLk~Ia~~mi~~gy~~eC~~~Y~~vrk~i~~e~l 227 (623)
T KOG2344|consen 153 ---LNSKDEE-ASLNSDSKYSALSDEES-FGDDEIEPDLFPPDVMTDLKAIAQRMIAAGYEKECFKVYKSIRKSILDESL 227 (623)
T ss_pred ---ccccccc-cccccCccccccccccc-ccCceeeccCCCchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 1110000 00000001111111111 234556789999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCChHHhhhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccchhhHHHhhhhhhHHHHHHHHHH
Q 041189 237 AILGVEKLSMEEVQKVEWSSLDEKMKKWIQAVKIAGKLLLSGEKKLCDHIFSEAETLGDDCFNETAKGCVKPLLIFAEAV 316 (635)
Q Consensus 237 ~~L~~e~~s~~~v~k~~w~~le~~i~~wi~a~~~~vk~L~~~Er~L~~~vf~~~~~~~~~~F~~i~~~~~~~Ll~f~~av 316 (635)
..||++++++++|++|+|+.++.+|++|++++++++++||++|+.||++||++.++....||.+|++.++++||+||++|
T Consensus 228 ~~L~~e~ls~~~vq~~~we~le~~I~~Wi~~~kv~v~~lf~~E~~Lcd~If~~~~~~~~~cF~eI~~~~~~~ll~F~eav 307 (623)
T KOG2344|consen 228 VNLGVEKLSIEDVQRMDWEVLEGKIKKWIKAVKVAVSVLFEGEKKLCDQIFSDLESIVESCFPEIVKEAALQLLSFPEAV 307 (623)
T ss_pred HhcCeeeccHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhccchhe
Confidence 99999999999999999999999999999999999999999999999999998865322899999999999999999999
Q ss_pred HhccCChhHHHHHHHHHHHHHhhhHhHHHhhhch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCccc
Q 041189 317 AIGKRSSEKLFRILDMYDALADVLPNLEAMITSE---LVCSEVWGVLNALGEAAKGTFAEFENAVQSETSKKPMQGGEIH 393 (635)
Q Consensus 317 a~~~rspeklf~lLdmye~L~~l~p~~~~lf~~~---~v~~~~~~~l~~L~~~~~~~~~ef~~~I~~~~sk~~~~dG~VH 393 (635)
++++|+|||+|++||||+++.+++|+++.+|.++ .+|.++..++++|+++++++|.||++.|++|++++|++|||||
T Consensus 308 a~~kr~pEklf~iLd~y~~i~~l~p~ie~lF~~~~~s~vr~~~~~~~~rL~~~~~~~~~efe~~I~~d~sk~pv~gG~VH 387 (623)
T KOG2344|consen 308 AISKRSPEKLFKLLDLYETIVELRPDIERLFSDASCSEVRSQALSLLKRLGEGVRSIFVEFESAIRKDSSKTPVPGGGVH 387 (623)
T ss_pred eeccCCHHHHHHHHHHHHHHHHHHHHHHHhccCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcC
Confidence 9999999999999999999999999999999966 9999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhhHHHHHHhhccCCCCCCCccCCcCCcCCCChHHHHHHHHHHHHHHHHHHhhhhcCCccchhhHhh
Q 041189 394 PLTRYVMNYVKLLVDYSDTLNKLLEHDEIDTGSLQIDADSLESMSPIARRLLLLITCLESNIEEKSRLYDDSAMQYIFLM 473 (635)
Q Consensus 394 ~lT~~vmnyl~~L~~y~~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ii~~L~~nLe~KSk~ykd~aL~~iFLm 473 (635)
|||+||||||+.|++|+++|.++|...+.+..-....+++....++++.++.|||..|++||++||+.|+|++|+|||||
T Consensus 388 pLTryvmnyl~~L~dy~~tL~~il~~~~~~~~~~~~~~~~~~~~s~l~~~~~~ii~~L~~nLd~Ks~~Y~D~aL~~lFlm 467 (623)
T KOG2344|consen 388 PLTRYVMNYLNFLADYKDTLEQLLMEDPVDTSLPKSESEDESSNSLLAVHIARIILALECNLDTKSKLYKDPALSYLFLM 467 (623)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccccccccCcccccccccccHHHHHHHHHHHHHHhhhHHHHhhccchhhHHHHHH
Confidence 99999999999999999999999997641110011111222345899999999999999999999999999999999999
Q ss_pred ccHHHHHHhhccchhhhhhccHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccCCCCCCCccchHHHHHHHHHHHHHHHH
Q 041189 474 NNILYIVQKVKDSELGKLLGDNWVRKRRGQVRQYATSYLRASWSKALACLKDEGIGGGSTNASKVTLKERFRSFNLCFEE 553 (635)
Q Consensus 474 NN~~yI~~~v~~s~L~~lLG~~w~~~~~~~i~~~~~~Y~~~sW~~vl~~L~~~~~~~~~~~~~r~~lKerfk~FN~~FeE 553 (635)
||+|||+++|++++|+.+||++|+++|..+++||++.|++++|++|+++|.+++..+| ++++|+.+||||++||++|||
T Consensus 468 NN~~yiv~kvkss~L~~llGd~wl~kh~~~~~qy~~~Y~r~sW~~vl~~L~~~~s~~~-~~~~~~~~Kerfk~FN~~FeE 546 (623)
T KOG2344|consen 468 NNLHYIVQKVKSSELRLLLGDDWLRKHEEKLRQYATSYERESWGKVLSLLTDEGSSSG-GKKSKEVLKERFKLFNEQFEE 546 (623)
T ss_pred hhHHHHHHHHhcchHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-cccCHHHHHHHHHHHHHHHHH
Confidence 9999999999988999999999999999999999999999999999999999884433 358899999999999999999
Q ss_pred HHHhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcccccCHHHHHHHHHhhhCCCCCCCCC
Q 041189 554 IYRVQTAWKVPDPQLREELRISISEKVIPAYRSFMGRFRSQLESGRHAGKYIKYTPEDLESYLLDLFEGSPGVLHH 629 (635)
Q Consensus 554 ~~~~Q~~w~VpD~~LRe~Lr~~i~~~v~PaY~~F~~r~~~~~~~~k~~~KyiKYtpe~le~~L~~LF~g~~~~~~~ 629 (635)
+|++|++|+||||+||++||.+|+++|+|+|++||+||+..+ .+|||+|||||||||||++|++||+|++.+...
T Consensus 547 v~k~Qs~wvV~D~~Lr~eLk~si~~~v~P~Yr~F~~r~~~~~-~~k~~~kyikYtpedlE~~L~dLF~g~~~~~s~ 621 (623)
T KOG2344|consen 547 VYKKQSQWVVPDPKLREELKISISEKVVPAYRSFYGRYRNSV-SGKNPEKYIKYTPEDLENYLSDLFEGSPSSPSG 621 (623)
T ss_pred HHHhhCceecccHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCCCCcccccCHHHHHHHHHHHhCCCCCCCCC
Confidence 999999999999999999999999999999999999999877 599999999999999999999999999955433
No 2
>PF03081 Exo70: Exo70 exocyst complex subunit; InterPro: IPR004140 The Exo70 protein forms one subunit of the exocyst complex. First discovered in Saccharomyces cerevisiae [], Exo70 and other exocyst proteins have been observed in several other eukaryotes, including humans. In S. cerevisiae, the exocyst complex is involved in the late stages of exocytosis, and is localized at the tip of the bud, the major site of exocytosis in yeast []. Exo70 interacts with the Rho3 GTPase []. This interaction mediates one of the three known functions of Rho3 in cell polarity: vesicle docking and fusion with the plasma membrane (the other two functions are regulation of actin polarity and transport of exocytic vesicles from the mother cell to the bud) []. In humans, the functions of Exo70 and the exocyst complex are less well characterised: Exo70 is expressed in several tissues and is thought to also be involved in exocytosis [].; GO: 0006887 exocytosis, 0000145 exocyst; PDB: 2PFV_A 2B7M_B 2B1E_A 2PFT_A.
Probab=100.00 E-value=3.6e-78 Score=652.54 Aligned_cols=356 Identities=46% Similarity=0.800 Sum_probs=313.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccchhhHHHhhhhhhHHHHHHHHHHH---hccCChhHHHHHHHHHHHHH
Q 041189 261 MKKWIQAVKIAGKLLLSGEKKLCDHIFSEAETLGDDCFNETAKGCVKPLLIFAEAVA---IGKRSSEKLFRILDMYDALA 337 (635)
Q Consensus 261 i~~wi~a~~~~vk~L~~~Er~L~~~vf~~~~~~~~~~F~~i~~~~~~~Ll~f~~ava---~~~rspeklf~lLdmye~L~ 337 (635)
|++|+++++++++.|+++|++||++||+..++....||.+++++++..|++||++|+ ...++|+++|.+||||++|.
T Consensus 1 ~~~wi~~~~~~~~~l~~~E~~L~~~vf~~~~~~~~~~f~~i~~~~~~~ll~~~~~v~~~~~~~~~~~~lf~ll~~~~~l~ 80 (371)
T PF03081_consen 1 IKRWIQAYKVALKKLFQSERRLCDQVFPESSSIADECFAEIAKPPLLQLLNFADAVASVRNSQRSPEKLFELLDMYEALS 80 (371)
T ss_dssp T-SHHHHHHHHHHHHHHHHHHHHHHHSSCCCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHTCCCCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHH
Confidence 578999999999999999999999999998777899999999999999999999999 88899999999999999999
Q ss_pred hhhHhHHHhhhch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCCCCCCCccccchHHHHHHHHHHHhhHHH
Q 041189 338 DVLPNLEAMITSE---LVCSEVWGVLNALGEAAKGTFAEFENAVQS--ETSKKPMQGGEIHPLTRYVMNYVKLLVDYSDT 412 (635)
Q Consensus 338 ~l~p~~~~lf~~~---~v~~~~~~~l~~L~~~~~~~~~ef~~~I~~--~~sk~~~~dG~VH~lT~~vmnyl~~L~~y~~~ 412 (635)
+++|+++.+|.++ .++.++.+++++|+++++++|.+|.+.|+. ++.+.+|+||||||+|+||||||+.|++|+++
T Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~~~~i~~~~~~~~~~p~dg~Vh~lT~~vm~yl~~L~~y~~~ 160 (371)
T PF03081_consen 81 ELLPDLDSLFSGESCESIRQEFDELLKKLREAIRKILEEFEESIKNDSDSSSSVPSDGGVHPLTSYVMNYLKRLAEYRDT 160 (371)
T ss_dssp HHHCCCHHCTCC-S-HHHHTHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGCS-TTS---HHHHHHHHHHHHHHCTHHH
T ss_pred HHhHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 9999999999985 778899999999999999999999999999 77788889999999999999999999999999
Q ss_pred HHHhhccCCC-CCCCccCCc----CCcCCCChHHHHHHHHHHHHHHHHHHhhhhcCCccchhhHhhccHHHHHHhhccch
Q 041189 413 LNKLLEHDEI-DTGSLQIDA----DSLESMSPIARRLLLLITCLESNIEEKSRLYDDSAMQYIFLMNNILYIVQKVKDSE 487 (635)
Q Consensus 413 L~~lL~~~~~-~~~~~~~~~----~~~~~~~~l~~~i~~ii~~L~~nLe~KSk~ykd~aL~~iFLmNN~~yI~~~v~~s~ 487 (635)
|+.+|..... ++...+..+ ..+.+.++++.|+.++|++|+.|||+||+.|+|++|++||||||+|||++++++|+
T Consensus 161 l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~ks~~y~d~~l~~iFLlNN~~yI~~~~~~s~ 240 (371)
T PF03081_consen 161 LESILQSDGDGNWLSESGPPSESSSSTDSQSSLSSYIADIISALESNLEAKSKSYKDPALRYIFLLNNYHYILKKLKRSE 240 (371)
T ss_dssp HHHCCCTT-GGGGS-SS--GGGS---CCHHHHHHHHHHHHHHHHHHHHHHHHCCHCTHHHHHHHHHHHHHHHHCCCCTSH
T ss_pred HHHHHHhccccccccccccccccccccCccchHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999987532 111100000 00124578999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccCCC--CCCCccchHHHHHHHHHHHHHHHHHHHhccccccCC
Q 041189 488 LGKLLGDNWVRKRRGQVRQYATSYLRASWSKALACLKDEGIG--GGSTNASKVTLKERFRSFNLCFEEIYRVQTAWKVPD 565 (635)
Q Consensus 488 L~~lLG~~w~~~~~~~i~~~~~~Y~~~sW~~vl~~L~~~~~~--~~~~~~~r~~lKerfk~FN~~FeE~~~~Q~~w~VpD 565 (635)
|..++|++|++++..++++|.+.|++++|+||+++|.+++.. ++.++++|+.+|+||++||.+|||+|+.|+.|+|||
T Consensus 241 l~~~lg~~~~~~~~~~~~~~~~~Y~~~sW~~v~~~L~~~~~~~~~~~~~~~~~~~ke~f~~Fn~~fee~~~~q~~~~vpD 320 (371)
T PF03081_consen 241 LKDLLGDDWEQRLSSKIEQYIKSYLRSSWGPVLSCLSDDSSSSGGKLSSKERELLKEKFKKFNSAFEEIYKAQKTWKVPD 320 (371)
T ss_dssp HHHCCTTCHHHHHHHHHHHHHHHHHCHHHHHHHCTCCHHCC-T-SSS-HHHHHHHHHHHHHHHHHHHHHHHHHTT---S-
T ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCccHHHHHHHHHHHHHHHHHHHHcCcceecCC
Confidence 999999999999999999999999999999999999985322 223678899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcccccCHHHHHHHHHhh
Q 041189 566 PQLREELRISISEKVIPAYRSFMGRFRSQLESGRHAGKYIKYTPEDLESYLLDL 619 (635)
Q Consensus 566 ~~LRe~Lr~~i~~~v~PaY~~F~~r~~~~~~~~k~~~KyiKYtpe~le~~L~~L 619 (635)
|+||++||.+|+++|+|+|++||+||+... | ||+|||||||++||++|++|
T Consensus 321 ~~LR~~Lr~~i~~~v~p~Y~~F~~~~~~~~-~--~~~Kyikyt~~~le~~l~~L 371 (371)
T PF03081_consen 321 PELREELRREIKEKVVPAYRRFYERYRNSQ-F--NPEKYIKYTPEDLENMLNEL 371 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-S--SHCCC-SS-HHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc-c--CCCCCCccCHHHHHHHHHcC
Confidence 999999999999999999999999999854 4 99999999999999999986
No 3
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=99.20 E-value=9e-07 Score=101.97 Aligned_cols=510 Identities=16% Similarity=0.229 Sum_probs=265.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHhhhhhhhhhcccccCCCCCC-----------CccHHHHHHHHHhhcCCC----
Q 041189 13 RVLATAQQIVKSLNTPKEVREDMLLIFSSFDNRLSNIGELINGDSSG-----------PHSFESAEKIILRHDSNS---- 77 (635)
Q Consensus 13 ~~~a~~~~i~~sL~~s~~lt~~m~~iL~~fd~rls~l~~~~~~~~~~-----------e~~l~~~e~vi~~~~~~~---- 77 (635)
..+..-+-+.+.|.+-.+--+.|-.......++|..-...-.+.... +..-+.+...+.+|--++
T Consensus 35 ~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f~Ls~~E~~ 114 (618)
T PF06419_consen 35 EFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERFTLSEEEED 114 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 34555555556666555556666666666666655433221111111 222345566667776665
Q ss_pred CCC-Chhh-HHHHHHHHHHHHHHHhhc----cCCCC---chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccc
Q 041189 78 NWD-SPEE-FNEFIGAVDDILRLIDNL----SVGSD---NEVMDRAETAIQAAMSRLEDDFRHLLISNTIPLDADGLYGS 148 (635)
Q Consensus 78 i~~-~~~~-~~~yL~av~~l~~~~~~~----~~~~~---~~~l~~a~~Ll~~am~~Le~EF~~lL~~~s~~~~p~~l~~~ 148 (635)
+.. ...+ -++|..|++++++.-+.- ..++. -+.++.....++.|..||=. .+..+.+.. .
T Consensus 115 ~L~~~~~~v~~~FF~~L~r~~~I~~~c~~LL~~~~~~ag~~iM~~~~~~~e~a~erl~~---w~q~e~~~l-~------- 183 (618)
T PF06419_consen 115 ALTSGEEPVDDEFFDALDRVQKIHEDCKILLSTENQRAGLEIMEQMSKYLERAYERLYR---WVQRECRSL-N------- 183 (618)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhh-h-------
Confidence 333 3224 379999999998876532 23332 34567777777777777622 211111110 0
Q ss_pred ccccccccccCCCCCCcccccccccCCCCccccccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHCCCchHHHHHHHHhh
Q 041189 149 MRRVSLSFAANDGEIDGEFESFGEVSDGSVRFHERGASLGEEASVDLIEPAAVDDLKQIADRMIRSGYEKECFQVYSNIR 228 (635)
Q Consensus 149 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~L~~Ia~~m~~~g~~~e~~~~Y~~~R 228 (635)
.+ -+.+++..-.-|+.+.++. -+-+.|++.|+..|
T Consensus 184 ----------~~--------------------------------~~~~~~~l~~al~~L~~rp---~lf~~~l~~~~~~R 218 (618)
T PF06419_consen 184 ----------LD--------------------------------NPEVSPLLRRALRYLRERP---VLFNYCLDEFAEAR 218 (618)
T ss_pred ----------hc--------------------------------CcccchHHHHHHHHHhcCh---HHHHHHHHHHHHHH
Confidence 00 0011222223344444433 35689999999999
Q ss_pred HHHHH-HHHHhhCCCCC------ChHHhhhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc-cch---hh
Q 041189 229 RGALD-ECLAILGVEKL------SMEEVQKVEWSSLDEKMKKWIQAVKIAGKLLLSGEKKLCDHIFSEAET-LGD---DC 297 (635)
Q Consensus 229 ~~~l~-~sL~~L~~e~~------s~~~v~k~~w~~le~~i~~wi~a~~~~vk~L~~~Er~L~~~vf~~~~~-~~~---~~ 297 (635)
+..|- +.+..|....- +|+-- .=+.---=+-|=.|++.+ .++|+.+...+|...+. ... ..
T Consensus 219 ~~~l~~~F~~aLt~g~~~~~~~rPIel~-AhDP~RYvGDmLAwvHq~-------~a~E~E~l~~Lf~~~~~~~~~~~~~~ 290 (618)
T PF06419_consen 219 SKALLRRFLDALTRGGPGGSPSRPIELH-AHDPLRYVGDMLAWVHQA-------IASEREFLESLFKFDEDEIAEGSSSG 290 (618)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCchhhh-ccChHHHHHHHHHHHHHH-------hhhHHHHHHHHhcccccccccccccc
Confidence 88775 45567743321 22210 000000012355677654 68999999999986432 100 11
Q ss_pred HHHhh--hhhhHHHH-HHHHHHH-----------hccCChh---HHHHHHHHHHHHHhhhHhHHHhhhchhHHHHHHHHH
Q 041189 298 FNETA--KGCVKPLL-IFAEAVA-----------IGKRSSE---KLFRILDMYDALADVLPNLEAMITSELVCSEVWGVL 360 (635)
Q Consensus 298 F~~i~--~~~~~~Ll-~f~~ava-----------~~~rspe---klf~lLdmye~L~~l~p~~~~lf~~~~v~~~~~~~l 360 (635)
|.+-. ...+..++ .--++++ .+...|- |++.+|.-|..+ |..++... +.+...+
T Consensus 291 ~~~~~~~~~~~~~lld~i~~~l~rplk~RvEQvi~se~~~i~~yki~~LL~fY~~~------~~k~i~~~---s~L~~tl 361 (618)
T PF06419_consen 291 FDSNPWSEELINELLDRILEGLCRPLKIRVEQVISSEEDPITLYKIANLLSFYQMT------FSKLIGED---SSLIETL 361 (618)
T ss_pred cccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH------HHHHcCCC---chHHHHH
Confidence 11000 01111122 1112222 1222232 567777777665 23333332 1233344
Q ss_pred HHHHHHHHHH----HHHHHHHHhcccCCCCCCCCccccchHHHHHHHHHHHhhHHHHHHhhccCCCCCCCccCCcCCcCC
Q 041189 361 NALGEAAKGT----FAEFENAVQSETSKKPMQGGEIHPLTRYVMNYVKLLVDYSDTLNKLLEHDEIDTGSLQIDADSLES 436 (635)
Q Consensus 361 ~~L~~~~~~~----~~ef~~~I~~~~sk~~~~dG~VH~lT~~vmnyl~~L~~y~~~L~~lL~~~~~~~~~~~~~~~~~~~ 436 (635)
..|.+.+.+. +......+.......|++|=...+ .+..|+..|. .|+..+++ +..+.+.. ..
T Consensus 362 ~~L~~~a~~~f~~~l~~~~~~l~~~~~~~~~~DL~PP~---~l~d~l~~L~-------~il~~~~~---s~~~~~~~-~~ 427 (618)
T PF06419_consen 362 KELQDLAQKKFFSSLRDHVAKLLRSAPEPPPADLSPPE---WLIDFLSLLR-------EILDVYDS---SLSPDDDR-EN 427 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCH---HHHHHHHHHH-------HHHHHhhc---ccCCccch-hh
Confidence 4444444443 444444555542233444544433 3444444433 33333221 11111100 11
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhhhcCCccchhhHhhccHHHHHHhhccchhhhhhccHHHHHHHHHHHHHHH-------
Q 041189 437 MSPIARRLLLLITCLESNIEEKSRLYDDSAMQYIFLMNNILYIVQKVKDSELGKLLGDNWVRKRRGQVRQYAT------- 509 (635)
Q Consensus 437 ~~~l~~~i~~ii~~L~~nLe~KSk~ykd~aL~~iFLmNN~~yI~~~v~~s~L~~lLG~~w~~~~~~~i~~~~~------- 509 (635)
...+...+..+|+-+....+..+....++.-..||++|.+.+|...+..-+.. .+|..+...+++.+..
T Consensus 428 ~~~~~~Il~~~idpll~~c~~~a~~L~~~~~~~if~iNCl~~i~s~L~~~~~~----~~~~e~L~~~id~~~~~Lv~~Q~ 503 (618)
T PF06419_consen 428 DNDFKPILDEPIDPLLQMCQKSASPLAPKDDRAIFMINCLDLIQSTLSPFEFT----SERVEELQDQIDAHVDTLVEEQA 503 (618)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHhhccCChhhhHHHHHHhHHHHHHHccChHhH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 26788888889998888888888877776668999999999999998764322 2555555555554432
Q ss_pred -HHH-HHhHHHHHHhhc----ccCCCC---CCCccchHHHHHHHHHHHHHHHHH-HHhccc-cccCChHHHHHHHHHHHH
Q 041189 510 -SYL-RASWSKALACLK----DEGIGG---GSTNASKVTLKERFRSFNLCFEEI-YRVQTA-WKVPDPQLREELRISISE 578 (635)
Q Consensus 510 -~Y~-~~sW~~vl~~L~----~~~~~~---~~~~~~r~~lKerfk~FN~~FeE~-~~~Q~~-w~VpD~~LRe~Lr~~i~~ 578 (635)
.++ +..-+++...+. +....+ .....+...++.-..+|+.-+--. .-.|.. -.+.+|.+|+.++.....
T Consensus 504 ~~lL~~sGL~~~~~~l~~i~~~~~~~~pls~~p~~~~~~l~~a~~kld~fL~sa~~d~~~~L~~L~Sp~l~~~I~~~a~~ 583 (618)
T PF06419_consen 504 SFLLERSGLGDLYNALNMIFFDYDMYGPLSENPGMDPDSLSNALQKLDDFLPSALTDAQPNLFKLQSPKLRDDIRERAFE 583 (618)
T ss_pred HHHHHHCCcHHHHHHHHhhccCCcccCCcccCccCCHHHHHHHHHHHHHHHcccchhhhHHHHHhcCHHHHHHHHHHHHH
Confidence 222 222335555554 211111 113344555554444444443221 123333 447899999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccCCCCCcccccCHHHHHHHH
Q 041189 579 KVIPAYRSFMGRFRSQLESGRHAGKYIKYTPEDLESYL 616 (635)
Q Consensus 579 ~v~PaY~~F~~r~~~~~~~~k~~~KyiKYtpe~le~~L 616 (635)
.++-+|..||+...+.. .+ -+.-..+||++|..+|
T Consensus 584 ~f~~~Y~~v~~~v~d~~-n~--y~sl~~~tpeeI~~LL 618 (618)
T PF06419_consen 584 RFCKAYEKVYEAVMDPD-NG--YESLFPRTPEEIRTLL 618 (618)
T ss_pred HHHHHHHHHHHHHhChh-cc--cccccCCCHHHHhhcC
Confidence 99999999999976521 11 1134689999998764
No 4
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.31 E-value=0.0033 Score=69.61 Aligned_cols=377 Identities=15% Similarity=0.148 Sum_probs=196.0
Q ss_pred HHhcCChhhHHHHHHHHhhhhhhhhhcccccCCCCCC-------CccHHHHHHHHHhhcCCC---------CCCChhhHH
Q 041189 23 KSLNTPKEVREDMLLIFSSFDNRLSNIGELINGDSSG-------PHSFESAEKIILRHDSNS---------NWDSPEEFN 86 (635)
Q Consensus 23 ~sL~~s~~lt~~m~~iL~~fd~rls~l~~~~~~~~~~-------e~~l~~~e~vi~~~~~~~---------i~~~~~~~~ 86 (635)
..+..=+.+=.+|...|++|.++|+.+..-+.-.+.. =+...+++..|+++.-.- |.+++-+=.
T Consensus 82 Nqi~~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~~L~Nrq~v~s~Ls~fVdd~iVpp~lI~~I~~g~vne~ 161 (683)
T KOG1961|consen 82 NQIRACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQLRLENRQAVESKLSQFVDDLIVPPELIKTIVDGDVNEP 161 (683)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHhccccCCHHHHHHHHcCCCCch
Confidence 3344556777899999999999999987755433333 223456777777776533 333333334
Q ss_pred HHHHHHHHHHHHHhhccCC---CC----chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccccC
Q 041189 87 EFIGAVDDILRLIDNLSVG---SD----NEVMDRAETAIQAAMSRLEDDFRHLLISNTIPLDADGLYGSMRRVSLSFAAN 159 (635)
Q Consensus 87 ~yL~av~~l~~~~~~~~~~---~~----~~~l~~a~~Ll~~am~~Le~EF~~lL~~~s~~~~p~~l~~~~~~~s~~~~~~ 159 (635)
+|++++.+|..-+...... .+ +..-.-.+.|-.+|+.+.-+---+-+..-++|.+-
T Consensus 162 ~f~~~LeeL~~Kl~~v~~dq~~k~a~a~~Dv~~lLdkLR~KAi~kir~~IlqkI~~fRkp~tn----------------- 224 (683)
T KOG1961|consen 162 EFLEALEELSHKLKLVELDQSNKDAKALKDVEPLLDKLRLKAIEKIREFILQKIKAFRKPMTN----------------- 224 (683)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----------------
Confidence 8999999998777655411 12 33444556777888888866666666665665431
Q ss_pred CCCCCcccccccccCCCCccccccCCCCCCCcccCCCC-HHHHHHHHHHHHHHHHCCC--chHHHHHHHHhhHHHH----
Q 041189 160 DGEIDGEFESFGEVSDGSVRFHERGASLGEEASVDLIE-PAAVDDLKQIADRMIRSGY--EKECFQVYSNIRRGAL---- 232 (635)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~v~~L~~Ia~~m~~~g~--~~e~~~~Y~~~R~~~l---- 232 (635)
..+| ..++-.-+-|..++...|. ..|..++|++-=+.+.
T Consensus 225 ----------------------------------~qi~~Q~~LLK~k~~y~FL~~n~r~~A~Elr~aYIdTM~k~y~~yF 270 (683)
T KOG1961|consen 225 ----------------------------------YQIPQQHALLKYKFFYEFLLENNRELALELRDAYIDTMNKIYLSYF 270 (683)
T ss_pred ----------------------------------cchHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122 4455566666666665542 2355566654332222
Q ss_pred HHHHH---h------------hCCC-CCChH----------Hhhhh-------------c---------------hhhhh
Q 041189 233 DECLA---I------------LGVE-KLSME----------EVQKV-------------E---------------WSSLD 258 (635)
Q Consensus 233 ~~sL~---~------------L~~e-~~s~~----------~v~k~-------------~---------------w~~le 258 (635)
..... . +|++ ..|.. .+.+. . -.-.|
T Consensus 271 ~sY~~~L~klq~~~iat~~D~~Gi~fn~skGl~~~fsk~~~~l~~r~tvF~ig~R~~Iltq~d~p~lvphiae~~k~~~E 350 (683)
T KOG1961|consen 271 KSYIRRLTKLQFEEIATKEDLMGIEFNASKGLFFFFSKLPEPLKNRSTVFTIGKRLQILTQLDAPILVPHIAEANKYYIE 350 (683)
T ss_pred HHHHHHHHHHHHHHHhccccccccccccCccHHHHhccCcchhhcccceeehhhhhhhhhhccccchhhhHHhcCCCcHH
Confidence 11111 1 1221 10100 00000 0 01134
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccchhhHHHhhhhhhHHHHHHHHH-HHhccCChh---HHHHHHHHHH
Q 041189 259 EKMKKWIQAVKIAGKLLLSGEKKLCDHIFSEAETLGDDCFNETAKGCVKPLLIFAEA-VAIGKRSSE---KLFRILDMYD 334 (635)
Q Consensus 259 ~~i~~wi~a~~~~vk~L~~~Er~L~~~vf~~~~~~~~~~F~~i~~~~~~~Ll~f~~a-va~~~rspe---klf~lLdmye 334 (635)
..+..|-.++.-- ..+||-.|...|.-.++..+.+|.+|-.+++...+..-+. |+.+ ...- ...++.+-|.
T Consensus 351 ~lfrs~~~al~dn----~tsEYlFl~efF~~~gd~~~~if~aIf~~tls~~~k~~~~~Is~~-~DaIgvll~Iri~~k~q 425 (683)
T KOG1961|consen 351 ALFRSLHLALLDN----ATSEYLFLEEFFAVSGDQAEDIFYAIFGKTLSVILKYLESLISDC-YDAIGVLLCIRIIHKLQ 425 (683)
T ss_pred HHHHHHHHHHHhc----chhHHHHHHHHHhhcCchHHHHHHHHhcccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4555665554322 3589999999996555456678888765554443333332 2211 0000 0011111111
Q ss_pred HH--HhhhHhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-CC-CCCccccchHHHHHHHHHHHhhH
Q 041189 335 AL--ADVLPNLEAMITSELVCSEVWGVLNALGEAAKGTFAEFENAVQSETSKK-PM-QGGEIHPLTRYVMNYVKLLVDYS 410 (635)
Q Consensus 335 ~L--~~l~p~~~~lf~~~~v~~~~~~~l~~L~~~~~~~~~ef~~~I~~~~sk~-~~-~dG~VH~lT~~vmnyl~~L~~y~ 410 (635)
-+ +...|.+++-..+- ..-++-|+. -+|.-=...+++-..++ +- +|.+.|++|+-.-.|+..+.
T Consensus 426 l~~~rR~VP~ld~y~n~v-----~~~LWPRFq----~V~d~h~eSlR~~di~~~~~~~d~rPHyitrRyAEf~ss~~--- 493 (683)
T KOG1961|consen 426 LIAARRRVPALDSYWNSV-----LIFLWPRFQ----LVMDMHCESLRKADITTLWEKLDTRPHYITRRYAEFLSSFL--- 493 (683)
T ss_pred HHHHhcCCcchhhHHHHH-----HHHHHHHHH----HHHHHHHHHHHhcChhhcccccCCCchHHHHHHHHHHHHHH---
Confidence 11 12233333322111 111111111 01111112233222223 32 78899999987655544442
Q ss_pred HHHHHhhccCCCCCCCccCCcCCcCCCChHHHHHHHHHHHHHHHHHHhhhhcCCccchhhHhhccHHHHHHhhcc
Q 041189 411 DTLNKLLEHDEIDTGSLQIDADSLESMSPIARRLLLLITCLESNIEEKSRLYDDSAMQYIFLMNNILYIVQKVKD 485 (635)
Q Consensus 411 ~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ii~~L~~nLe~KSk~ykd~aL~~iFLmNN~~yI~~~v~~ 485 (635)
.+=...+ + ..++...+.++....++-+..-+|.++++--+.+||.||+-||..-+..
T Consensus 494 ----~l~v~~~--------~------~~~~~~ll~~l~~~ve~fl~rmak~~~~~K~q~vFLiNNYdlil~vL~e 550 (683)
T KOG1961|consen 494 ----MLNVTYG--------N------EQDVERLLERLQMEVESFLLRMAKLFPTRKQQLVFLINNYDLILGVLME 550 (683)
T ss_pred ----HHHHhcc--------c------cchHHHHHHHHHHHHHHHHHHHHHhcCCcccceeeeeccHHHHHHHHHh
Confidence 2211111 0 1124555566666667777778899999999999999999999977764
No 5
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=98.20 E-value=0.0047 Score=69.96 Aligned_cols=383 Identities=17% Similarity=0.169 Sum_probs=212.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhhhhhhhhcccccCCCCCC-----------CccHHHHHHHHHhhcCCC-----CC
Q 041189 16 ATAQQIVKSLNTPKEVREDMLLIFSSFDNRLSNIGELINGDSSG-----------PHSFESAEKIILRHDSNS-----NW 79 (635)
Q Consensus 16 a~~~~i~~sL~~s~~lt~~m~~iL~~fd~rls~l~~~~~~~~~~-----------e~~l~~~e~vi~~~~~~~-----i~ 79 (635)
.....+...+...+++=..|-..|.+|.+.|+.+...+.-.+.. ....+.+..+|..--..+ |.
T Consensus 14 ~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~ipP~lI~~I~ 93 (508)
T PF04129_consen 14 ENFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIVIPPDLIRSIC 93 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCHHHHHhHh
Confidence 34556677888889999999999999999999998876665554 222333333444433333 33
Q ss_pred C-ChhhHHHHHHHHHHHHHH-HhhccCC--CC----chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccc
Q 041189 80 D-SPEEFNEFIGAVDDILRL-IDNLSVG--SD----NEVMDRAETAIQAAMSRLEDDFRHLLISNTIPLDADGLYGSMRR 151 (635)
Q Consensus 80 ~-~~~~~~~yL~av~~l~~~-~~~~~~~--~~----~~~l~~a~~Ll~~am~~Le~EF~~lL~~~s~~~~p~~l~~~~~~ 151 (635)
+ +-++ .|+..+-++..- ..+.... .+ .+.......|-.+|+.|+=+-|-..+..-++|..+..
T Consensus 94 ~~~v~e--~~~~~~~~~~~k~~~~~~~~~~~~~~a~~d~~~~Le~L~~ka~~rir~fl~~kI~~lr~~~tn~q------- 164 (508)
T PF04129_consen 94 EGPVNE--QYIEELLELLKKKIFFSKDQSFKDSKAIKDVKPELEKLKNKAVERIRDFLLKKIKSLRKPKTNSQ------- 164 (508)
T ss_pred cCCCCH--HHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchH-------
Confidence 3 2222 566665444433 3332211 11 4455777788889999999888888877666542111
Q ss_pred cccccccCCCCCCcccccccccCCCCccccccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHCC--CchHHHHHHHHhhH
Q 041189 152 VSLSFAANDGEIDGEFESFGEVSDGSVRFHERGASLGEEASVDLIEPAAVDDLKQIADRMIRSG--YEKECFQVYSNIRR 229 (635)
Q Consensus 152 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~L~~Ia~~m~~~g--~~~e~~~~Y~~~R~ 229 (635)
+....+-.-+.+..+|.... ...|+.++|++.=+
T Consensus 165 --------------------------------------------~iQ~~LLk~~~~~~FL~~~~~~~a~El~~~Yv~tM~ 200 (508)
T PF04129_consen 165 --------------------------------------------IIQQVLLKYKELFQFLKKHSPELAKELRQAYVETMS 200 (508)
T ss_pred --------------------------------------------HHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 11223444555666665533 23456666654322
Q ss_pred HHH-------HHHHHhhCCCCC-------------------------------ChH---Hhhh--hchh-----------
Q 041189 230 GAL-------DECLAILGVEKL-------------------------------SME---EVQK--VEWS----------- 255 (635)
Q Consensus 230 ~~l-------~~sL~~L~~e~~-------------------------------s~~---~v~k--~~w~----------- 255 (635)
.+. ..+|..|..... +++ ++.+ .+-.
T Consensus 201 ~~Y~~~F~~Y~~~L~kl~~~~~~~~~dL~g~~~~~~~~~~s~~~~~~~~~~~Fslg~R~~iL~~~~~~p~i~~~~a~~~~ 280 (508)
T PF04129_consen 201 WYYSSYFKRYIRSLEKLQLRIIDSKDDLIGVEDSSKGGFFSSKSSLKNRSSVFSLGRRIDILNSELDAPIIVPQIAEDNS 280 (508)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccCCCccccccccCCCcccccchhhhhhhHHHHHHhhcccCCccccchhhccc
Confidence 222 122333311100 000 1111 0000
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccchhhHHHhhhhhhHHHHHHHHHHHhccCChhHHHHHHHH
Q 041189 256 ---SLDEKMKKWIQAVKIAGKLLLSGEKKLCDHIFSEAETLGDDCFNETAKGCVKPLLIFAEAVAIGKRSSEKLFRILDM 332 (635)
Q Consensus 256 ---~le~~i~~wi~a~~~~vk~L~~~Er~L~~~vf~~~~~~~~~~F~~i~~~~~~~Ll~f~~ava~~~rspeklf~lLdm 332 (635)
..|...+.|..++-=. ..+|+..|...|.......+.+|.+|-.+++..+..|-+.......++--++-++-+
T Consensus 281 ~k~~~E~iFRS~~~~L~Dn----~t~Ey~F~~~FF~~~~~~~~~if~~If~~t~~~~~~~~~~~l~~~~D~iglll~Irl 356 (508)
T PF04129_consen 281 QKYPIEEIFRSLNKALIDN----ATSEYLFISEFFSGSGDAAEDIFNQIFEPTFSLLQEFTEQLLSNSYDAIGLLLCIRL 356 (508)
T ss_pred ccCCHHHHHHHHHHHHHHh----hhHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 1244445554444222 468999999999885545567888888777777777777643222333233333332
Q ss_pred HHHHHh-----hhHhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-CCCCCccccchHHHHHHHHHH
Q 041189 333 YDALAD-----VLPNLEAMITSELVCSEVWGVLNALGEAAKGTFAEFENAVQSETSKK-PMQGGEIHPLTRYVMNYVKLL 406 (635)
Q Consensus 333 ye~L~~-----l~p~~~~lf~~~~v~~~~~~~l~~L~~~~~~~~~ef~~~I~~~~sk~-~~~dG~VH~lT~~vmnyl~~L 406 (635)
-..... -.|.++.- +.++...|=-....++..=.++|++-..+. ...+.+.|++|+---.|+..|
T Consensus 357 ~~~~~~~~~~R~ip~ld~y---------~~~~~~~LWprF~~i~d~nieSlk~~~~~~~~~~~~~PH~itrRyaef~~sl 427 (508)
T PF04129_consen 357 NQRYQFEMQRRRIPVLDSY---------LNSLLMLLWPRFQKIMDANIESLKKADPKKLGSIDTRPHYITRRYAEFLSSL 427 (508)
T ss_pred HHHHHHHHHhCCCCchHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCccCChHHHHHHHHHHHHH
Confidence 222221 12333322 223333333334445555555666544333 336788898888655554444
Q ss_pred HhhHHHHHHhhccCCCCCCCccCCcCCcCCCChHHHHHHHHHHHHHHHHHHhhhhcCCccchhhHhhccHHHHHHhhccc
Q 041189 407 VDYSDTLNKLLEHDEIDTGSLQIDADSLESMSPIARRLLLLITCLESNIEEKSRLYDDSAMQYIFLMNNILYIVQKVKDS 486 (635)
Q Consensus 407 ~~y~~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ii~~L~~nLe~KSk~ykd~aL~~iFLmNN~~yI~~~v~~s 486 (635)
. .+-... +...+...+.++-..++.-|..-|+..+++..+.+||.||+.+|+..+...
T Consensus 428 l-------~L~~~~---------------~~~~~~~~l~~L~~~~~~ll~~~s~~~~~~k~~~iFLiNNY~lIl~iL~~~ 485 (508)
T PF04129_consen 428 L-------KLSSEH---------------PDEQLEPSLNRLRREVEDLLTRLSKEFKDRKEREIFLINNYDLILSILSER 485 (508)
T ss_pred H-------HHhccC---------------chhhHHHHHHHHHHHHHHHHHHHHHhcccccccceehHHHHHHHHHHHHhc
Confidence 3 332111 112255566666666666666678888899899999999999999998765
No 6
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.023 Score=63.46 Aligned_cols=501 Identities=16% Similarity=0.211 Sum_probs=237.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhhhhhhhhcccccCCCCCCCccHHHHHHHHHhhcCCC----CCCChhhH-HHH
Q 041189 14 VLATAQQIVKSLNTPKEVREDMLLIFSSFDNRLSNIGELINGDSSGPHSFESAEKIILRHDSNS----NWDSPEEF-NEF 88 (635)
Q Consensus 14 ~~a~~~~i~~sL~~s~~lt~~m~~iL~~fd~rls~l~~~~~~~~~~e~~l~~~e~vi~~~~~~~----i~~~~~~~-~~y 88 (635)
+--..+-+...|.+++..|.|++.--.+|-.....+ |...+.++..+.+|--.. .....+.+ +.|
T Consensus 90 m~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~l----------e~r~kii~~Fl~~fqLs~~E~~~L~~~g~i~e~F 159 (655)
T KOG3758|consen 90 MANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQL----------ELRKKIINAFLDNFQLSSEELDLLTESGPIDEDF 159 (655)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhcccChHHHHHHhcCCcchHHH
Confidence 334445555555555555555555555544444333 345777888888887766 12222443 577
Q ss_pred HHHHHHHHHHHh---hc-cCCCC---chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccccCCC
Q 041189 89 IGAVDDILRLID---NL-SVGSD---NEVMDRAETAIQAAMSRLEDDFRHLLISNTIPLDADGLYGSMRRVSLSFAANDG 161 (635)
Q Consensus 89 L~av~~l~~~~~---~~-~~~~~---~~~l~~a~~Ll~~am~~Le~EF~~lL~~~s~~~~p~~l~~~~~~~s~~~~~~~~ 161 (635)
..++++++..-+ .+ +.++. -+.....+...+.|-++| |+ |.... . .++ ..
T Consensus 160 F~vL~rvqeIh~~~~~Ll~~~~~~Ag~eime~M~~~~E~a~erl---~r----~~qs~----e----~~~--------l~ 216 (655)
T KOG3758|consen 160 FKVLDRVQEIHDNCRLLLQTPNQTAGLEIMEKMALIQEGAYERL---FR----WSQSS----E----CRN--------LT 216 (655)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH---HH----HhhhH----h----hcC--------Cc
Confidence 788887776544 22 22221 233445555555555554 22 32110 0 000 00
Q ss_pred CCCcccccccccCCCCccccccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHC-CCchHHHHHHHHhhHHHH-HHHHHhh
Q 041189 162 EIDGEFESFGEVSDGSVRFHERGASLGEEASVDLIEPAAVDDLKQIADRMIRS-GYEKECFQVYSNIRRGAL-DECLAIL 239 (635)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~L~~Ia~~m~~~-g~~~e~~~~Y~~~R~~~l-~~sL~~L 239 (635)
.. =.+++-+-|++-..++... -.-+.|++-|+..|+..| .+.+..|
T Consensus 217 ~t--------------------------------~~~E~~~il~kA~~~L~~~p~lfk~~ide~~~aR~~~L~~~Fisal 264 (655)
T KOG3758|consen 217 GT--------------------------------DSQEVSPILRKAFVFLSSRPVLFKYLIDEVGTARSQSLLRQFISAL 264 (655)
T ss_pred cc--------------------------------cchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0133445555544444332 234689999999998765 7778888
Q ss_pred --CC-CCCC--hHHhhhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc-ccchh-----hHHHhhhhhhHH
Q 041189 240 --GV-EKLS--MEEVQKVEWSSLDEKMKKWIQAVKIAGKLLLSGEKKLCDHIFSEAE-TLGDD-----CFNETAKGCVKP 308 (635)
Q Consensus 240 --~~-e~~s--~~~v~k~~w~~le~~i~~wi~a~~~~vk~L~~~Er~L~~~vf~~~~-~~~~~-----~F~~i~~~~~~~ 308 (635)
|. ...+ |+- +.-+.-.-=+.|-.|++.. .++|+++...+|.-.. ...+. =...+..+....
T Consensus 265 trg~~~~~PrpIel-~ahDPlRyIGDmLawlHq~-------ia~Ekelv~aLfd~~~~d~q~n~~~~en~~~vl~~~dn~ 336 (655)
T KOG3758|consen 265 TRGGPGGMPRPIEL-HAHDPLRYIGDMLAWLHQA-------IANEKELVEALFDFKKEDLQDNISISENLPNVLGGIDNK 336 (655)
T ss_pred ccCCCCCCCCCccc-cCCChHHHHHHHHHHHHHH-------hhhHHHHHHHHhcchhhhhccCCCchhHhHHHHhchhhh
Confidence 32 1111 221 0000000012345677654 6899999999983211 00000 001111112222
Q ss_pred HH-HHHHHHH-----------hccCChh---HHHHHHHHHHHHHhhhHhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 041189 309 LL-IFAEAVA-----------IGKRSSE---KLFRILDMYDALADVLPNLEAMITSELVCSEVWGVLNALGEAAKGTFAE 373 (635)
Q Consensus 309 Ll-~f~~ava-----------~~~rspe---klf~lLdmye~L~~l~p~~~~lf~~~~v~~~~~~~l~~L~~~~~~~~~e 373 (635)
|| ...+.|+ ..-.++- |+..+|.-|... |..+..++ .-+...++.|...++.+|-.
T Consensus 337 lld~i~~gvcrPlkvRvEqil~~e~~~Iilfki~nlL~FY~~~------fs~~v~~d---s~l~~~l~~L~d~s~q~~~~ 407 (655)
T KOG3758|consen 337 LLDDILEGVCRPLKVRVEQILQAEKNAIILFKISNLLKFYRVT------FSKLVQDD---SALLNTLKELEDISKQRFIG 407 (655)
T ss_pred HHHHHHHHhcchhHHHHHHHHHcCcCceeehhHHHHHHHHHHH------HHHHhccc---HHHHHHHHHHHHHHHHHHHH
Confidence 22 1222222 1222232 334444444332 33333333 23445677777777776544
Q ss_pred HHH-HHhcccCC-CCCC-CCc-cccchHHHHHHHHHHHhhHHHHHHhhccCCCCCCCccCCcCCcCCCChHHHHHHHHHH
Q 041189 374 FEN-AVQSETSK-KPMQ-GGE-IHPLTRYVMNYVKLLVDYSDTLNKLLEHDEIDTGSLQIDADSLESMSPIARRLLLLIT 449 (635)
Q Consensus 374 f~~-~I~~~~sk-~~~~-dG~-VH~lT~~vmnyl~~L~~y~~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ii~ 449 (635)
..+ .+++-.-+ .+|+ |=. +..++.+++++...+.-|..++..... ...+....++..+.-|+.
T Consensus 408 ~l~~~~~~l~~~~l~p~~DLlPpp~v~~~l~ll~ei~~~~~a~~~~~d~-------------~~~df~~l~s~vldpilq 474 (655)
T KOG3758|consen 408 YLEDHVKKLMRKELSPPSDLLPPPAVREYLNLLVEIFEIYEASHTAEDG-------------EQLDFKLLLSCVLDPILQ 474 (655)
T ss_pred HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHHHHHHHHhhhhhccccc-------------cccchHHHHHHHHHHHHH
Confidence 433 23221111 2333 433 334555555555555555444322211 111122344555555555
Q ss_pred HHHHHHHHhhhhcCCccchhhHhhccHHHHHHhhccchhhhhhccHHHHHHHHHHHHHHHHHH---------HHhHHHHH
Q 041189 450 CLESNIEEKSRLYDDSAMQYIFLMNNILYIVQKVKDSELGKLLGDNWVRKRRGQVRQYATSYL---------RASWSKAL 520 (635)
Q Consensus 450 ~L~~nLe~KSk~ykd~aL~~iFLmNN~~yI~~~v~~s~L~~lLG~~w~~~~~~~i~~~~~~Y~---------~~sW~~vl 520 (635)
.-+..-+.+-. =+|.+. -+||+|-.+.|.+.+-.-+.. +.-+.....+++.|...-. +..-+.+.
T Consensus 475 ~c~~sae~~lp-~~d~~~-~if~iNcL~~iks~l~~~e~~----~~~~e~lq~~ie~~~d~L~t~q~s~ll~~~GLs~~~ 548 (655)
T KOG3758|consen 475 MCQKSAEAHLP-TSDKGS-LIFMINCLDLIKSRLARYEFL----DERVEMLQAKIEAYLDTLVTLQVSFLLENTGLSDLY 548 (655)
T ss_pred HHHHHHHhcCC-Cccccc-ceehhhhHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHH
Confidence 44444444421 012221 599999999998877653211 1112222333333332221 12222333
Q ss_pred HhhcccCCCCC--C--CccchHHHHHH---HHHHHHHHHHHHHhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 041189 521 ACLKDEGIGGG--S--TNASKVTLKER---FRSFNLCFEEIYRVQTAWKVPDPQLREELRISISEKVIPAYRSFMGRFRS 593 (635)
Q Consensus 521 ~~L~~~~~~~~--~--~~~~r~~lKer---fk~FN~~FeE~~~~Q~~w~VpD~~LRe~Lr~~i~~~v~PaY~~F~~r~~~ 593 (635)
+.+.......+ + .+.+-..+++- |..|+.+=.+.+=-|-. .+.-|.+|++++......++-+|..+|++-.+
T Consensus 549 q~~~~~~p~~~~ls~~~~l~s~~~~~~i~~fd~~l~~~~~~~lpq~q-~l~sp~~r~~i~kr~~~~~~~aY~~i~~al~~ 627 (655)
T KOG3758|consen 549 QKFNMITPEDSVLSLDPDLESALLDEAIVKFDMFLHAPLNLTLPQLQ-QLTSPMVRDEICKRSAKKFVLAYEIIYKALIN 627 (655)
T ss_pred HHHHhcCcchhhhhccccccHHHHHHHHHHHHHHhcccccccchHHH-HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33322111111 0 22222333433 44442221111100101 34579999999999999999999999999877
Q ss_pred hhccCCCC-CcccccCHHHHHHHH
Q 041189 594 QLESGRHA-GKYIKYTPEDLESYL 616 (635)
Q Consensus 594 ~~~~~k~~-~KyiKYtpe~le~~L 616 (635)
....-+.| +--++++|+++...+
T Consensus 628 ~~ngy~dPve~ll~~~~dq~~tll 651 (655)
T KOG3758|consen 628 PYNGYKDPVESLLHFSPDQVDTLL 651 (655)
T ss_pred cCCCCCChHHHHhcCCHHHhcccc
Confidence 44334556 566888998887665
No 7
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=95.94 E-value=5.2 Score=47.43 Aligned_cols=216 Identities=15% Similarity=0.252 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc--CCCCCC-CCccccchHHHHHHHHHHHhhHHHHHHhhccCCCCCCCccCCc
Q 041189 355 EVWGVLNALGEAAKGTFAEFENAVQSET--SKKPMQ-GGEIHPLTRYVMNYVKLLVDYSDTLNKLLEHDEIDTGSLQIDA 431 (635)
Q Consensus 355 ~~~~~l~~L~~~~~~~~~ef~~~I~~~~--sk~~~~-dG~VH~lT~~vmnyl~~L~~y~~~L~~lL~~~~~~~~~~~~~~ 431 (635)
=+..++.++...+++.|..|.+.--..- ++.... -.|| +-|++.+..|-..++.++...+..
T Consensus 438 fl~~~L~~l~~~~k~~f~~fv~~Qi~~ie~~k~~~k~r~GV-------l~~i~~fp~f~~~~E~~~~~~~~~-------- 502 (701)
T PF09763_consen 438 FLSNLLQKLQVRLKRLFDKFVDEQIKSIEETKVSKKKRKGV-------LPFIKKFPEFVKRVESMFSGAERA-------- 502 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcc-------chHHHHHHHHHHHHHHHHcccccc--------
Confidence 4556788888888889888876422111 222221 2244 556666677777777777643210
Q ss_pred CCcCCCChHHHHHHHHHHHHHHHHHHhhhhcC-----------CccchhhHhhccHHHHHHhhccchhhhhhccHHHHHH
Q 041189 432 DSLESMSPIARRLLLLITCLESNIEEKSRLYD-----------DSAMQYIFLMNNILYIVQKVKDSELGKLLGDNWVRKR 500 (635)
Q Consensus 432 ~~~~~~~~l~~~i~~ii~~L~~nLe~KSk~yk-----------d~aL~~iFLmNN~~yI~~~v~~s~L~~lLG~~w~~~~ 500 (635)
......+......++.++...|+..++.-+ ...-.+|.++=|+||+...+..-.....| +.|.++-
T Consensus 503 --~~~r~~vd~aY~kl~~a~~~~l~~~a~~~~~~~~~~~~~dk~~~~~~v~~leN~~~~~e~l~~~~~~~~l-~~~~~~A 579 (701)
T PF09763_consen 503 --REDRSLVDKAYEKLVRAMFDSLERIAKLSPKNSGSQDPEDKEKLNYHVVLLENYHHFYEELSQLKINSVL-EEFRKEA 579 (701)
T ss_pred --chHHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCccccccchhhHHHHHHHHHHHHHHhhccchhhH-HHHHHHH
Confidence 012345778889999999999999997433 13457999999999999999765441222 4566655
Q ss_pred HHHHHHHHHHHH----HHhHHHHHHhhccc-----CCCC----CCCccchHHHHHHHHH-----HHHHHHHHHH-hcccc
Q 041189 501 RGQVRQYATSYL----RASWSKALACLKDE-----GIGG----GSTNASKVTLKERFRS-----FNLCFEEIYR-VQTAW 561 (635)
Q Consensus 501 ~~~i~~~~~~Y~----~~sW~~vl~~L~~~-----~~~~----~~~~~~r~~lKerfk~-----FN~~FeE~~~-~Q~~w 561 (635)
....+++...|. +-.+++++.+.... ..+. ....-+|+.+|.-++. .-...+.+|+ .++.+
T Consensus 580 ~~~~~~~~~~Y~~~~l~r~~~kL~~F~~gve~l~~~~~~~ei~~~~~ySk~~l~kvl~~y~~kev~k~i~~l~krveKHf 659 (701)
T PF09763_consen 580 KQIYDEHLEAYVTFLLRRPFGKLLDFFEGVEALLQTVSPEEISYQAAYSKQELKKVLKSYPSKEVRKGIEALYKRVEKHF 659 (701)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccCchhcccchhccHHHHHHHHHhCChHHHHHHHHHHHHHHHHHc
Confidence 555555555554 44556666655221 1110 0134456666666555 4566888884 44444
Q ss_pred --c----cCChHHHHHHHHHHHHHHHHHHHHHH
Q 041189 562 --K----VPDPQLREELRISISEKVIPAYRSFM 588 (635)
Q Consensus 562 --~----VpD~~LRe~Lr~~i~~~v~PaY~~F~ 588 (635)
. ..+..|-+.+=.++.+..+--|.+|.
T Consensus 660 ~~~~~~~~~~~~Ll~~vW~~~q~~~i~~~~~l~ 692 (701)
T PF09763_consen 660 SRDADDPSFEEDLLQVVWSAMQEEFIRQYERLE 692 (701)
T ss_pred CCccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 23455555555555555555555444
No 8
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=91.72 E-value=36 Score=40.86 Aligned_cols=131 Identities=21% Similarity=0.323 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHhhHHHHHHHHHhhCCCCCChHHhhhhchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041189 202 DDLKQIADRMIRSGYEKECFQVYSNIRRGALDECLAILGVEKLSMEEVQKVEWSSLDEKMKKWIQAVKIAGKLLLSGEKK 281 (635)
Q Consensus 202 ~~L~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l~~sL~~L~~e~~s~~~v~k~~w~~le~~i~~wi~a~~~~vk~L~~~Er~ 281 (635)
...+...+.+..-|...++.+-|..+|+..|.+.=........ ......|+..+--.+-.++..|.+
T Consensus 201 ~~~~~~~~if~~i~R~~~l~~~Y~~~r~~~l~~~W~~~~~~~~-------------~~~~~~~L~~fyd~ll~~l~~E~~ 267 (766)
T PF10191_consen 201 DAAKEYVKIFSSIGREPQLEQYYCKCRKAPLQRLWQEYCQSDQ-------------SQSFAEWLPSFYDELLSLLHQELK 267 (766)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------------chhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666889999999999999877543222211100 023556776665555557889999
Q ss_pred HHhhhcCCCcccchhhHHHhhhhhhHHHH-HHHHHHHh-ccCC-hh-HHHHHHHHHHHHHhhhHhHHHhhhc
Q 041189 282 LCDHIFSEAETLGDDCFNETAKGCVKPLL-IFAEAVAI-GKRS-SE-KLFRILDMYDALADVLPNLEAMITS 349 (635)
Q Consensus 282 L~~~vf~~~~~~~~~~F~~i~~~~~~~Ll-~f~~ava~-~~rs-pe-klf~lLdmye~L~~l~p~~~~lf~~ 349 (635)
-|.+|||.... +...+....+..|- .|..-|.. .+++ |+ ++..++++|.+-.+..-.++.+|..
T Consensus 268 w~~~vF~~~~~----~~~~ll~~~L~~L~PS~~~~l~~al~~~~~~~~L~~L~~l~~~t~~Fa~~l~~~l~~ 335 (766)
T PF10191_consen 268 WCSQVFPDESP----VLPKLLAETLSALQPSFPSRLSSALKRAGPETKLETLIELYQATEHFARNLEHLLSS 335 (766)
T ss_pred HHHHHcCCchh----HHHHHHHHHHHhcCccHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999998643 22222222222232 34443321 1233 33 5889999998888877777777765
No 9
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.36 E-value=55 Score=37.85 Aligned_cols=211 Identities=18% Similarity=0.216 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCC---CCCCCccccchHHHHHHHHHHHhhHHHHHHhhccCCCCCCCccCCcCCc
Q 041189 358 GVLNALGEAAKGTFAEFENAVQSETSKK---PMQGGEIHPLTRYVMNYVKLLVDYSDTLNKLLEHDEIDTGSLQIDADSL 434 (635)
Q Consensus 358 ~~l~~L~~~~~~~~~ef~~~I~~~~sk~---~~~dG~VH~lT~~vmnyl~~L~~y~~~L~~lL~~~~~~~~~~~~~~~~~ 434 (635)
-.+..|.-.+++-|..|...-...-... .-.-|||-| |+-+...+-...+.+++..+
T Consensus 607 ~tlgsllv~VkrqFdrfiq~qc~qieevki~kksk~gILP-------yv~rFenfa~raE~if~nae------------- 666 (867)
T KOG2148|consen 607 LTLGSLLVRVKRQFDRFIQNQCSQIEEVKIAKKSKIGILP-------YVFRFENFARRAEIIFENAE------------- 666 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-------cHHHHHHHHHHHHHHHhhhh-------------
Confidence 3455666666777777765432222111 112345655 66667777778889987532
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhhhhcCCccchhhHhhccHHHHHHhhccchhhhhhccHHHHH-HHHHHHHHHHHHHH
Q 041189 435 ESMSPIARRLLLLITCLESNIEEKSRLYDDSAMQYIFLMNNILYIVQKVKDSELGKLLGDNWVRK-RRGQVRQYATSYLR 513 (635)
Q Consensus 435 ~~~~~l~~~i~~ii~~L~~nLe~KSk~ykd~aL~~iFLmNN~~yI~~~v~~s~L~~lLG~~w~~~-~~~~i~~~~~~Y~~ 513 (635)
..+.+......++.+...+++.-|..|.. .-..|-+|-|+|++...+- +|+ +-+-+..++ +...-..+.+.|..
T Consensus 667 -rRtdlekaYtklvravfvgiek~Aqq~pK-tp~dVv~mENyh~~y~tLs--~Lk-is~lda~kkeaka~~~dhl~ayV~ 741 (867)
T KOG2148|consen 667 -RRTDLEKAYTKLVRAVFVGIEKIAQQDPK-TPADVVLMENYHHFYATLS--DLK-ISCLDAAKKEAKALYADHLAAYVK 741 (867)
T ss_pred -hcchHHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHhhHHHHHHHHH--HHh-ccchhHHHHHHHHHHHHHHHHHHH
Confidence 45678888889999999999998888764 4567789999999987763 333 334344443 44555666788888
Q ss_pred HhHHHHHHhhcc--cCCC----CCC--------CccchHH----HHHHHHH-HHHHHHHHHHhccccccCChHHHHHHHH
Q 041189 514 ASWSKALACLKD--EGIG----GGS--------TNASKVT----LKERFRS-FNLCFEEIYRVQTAWKVPDPQLREELRI 574 (635)
Q Consensus 514 ~sW~~vl~~L~~--~~~~----~~~--------~~~~r~~----lKerfk~-FN~~FeE~~~~Q~~w~VpD~~LRe~Lr~ 574 (635)
.+.|.-+..|.. +|.. .|- -.-+|.. +++--.+ --..+|.+|++=..--+....|-..+=.
T Consensus 742 ~~~GrPLekln~Ffe~v~~~vaqGirpeeiSYQ~aFsk~elrkvi~qypgkEVkKglenlYKKveKnL~aeenLLqvvW~ 821 (867)
T KOG2148|consen 742 ESMGRPLEKLNTFFEGVNNKVAQGIRPEEISYQLAFSKQELRKVIKQYPGKEVKKGLENLYKKVEKNLLAEENLLQVVWH 821 (867)
T ss_pred HHhcChHHHHHHHHHhhHHHHhcCCChhhhhHHHHhhHHHHHHHHHHcchhhHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 788877666632 2211 010 0111222 2221112 4567888886544444556777777777
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 041189 575 SISEKVIPAYRSFMGRFRS 593 (635)
Q Consensus 575 ~i~~~v~PaY~~F~~r~~~ 593 (635)
+..+-.+--|..|-+.-..
T Consensus 822 ~mqeeFi~qy~~f~~lIak 840 (867)
T KOG2148|consen 822 KMQEEFIDQYESFEQLIAK 840 (867)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7778788888877766443
No 10
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=87.10 E-value=73 Score=37.88 Aligned_cols=212 Identities=17% Similarity=0.217 Sum_probs=111.6
Q ss_pred HHHHHHhhhhhhhhhcccccCCCCCC-------CccHHHHHHHHHhhcC-CC---------CCCChhhHHHHHHHHHHHH
Q 041189 34 DMLLIFSSFDNRLSNIGELINGDSSG-------PHSFESAEKIILRHDS-NS---------NWDSPEEFNEFIGAVDDIL 96 (635)
Q Consensus 34 ~m~~iL~~fd~rls~l~~~~~~~~~~-------e~~l~~~e~vi~~~~~-~~---------i~~~~~~~~~yL~av~~l~ 96 (635)
+...-+..+|+|++.+-..+.|+... ..+-..+..+|.+|.. .. ++....+-+.-.+|..-++
T Consensus 3 ~~~~~f~~Ld~~i~~v~~~~~~iG~~Le~~~~~r~ra~~a~~Li~~y~ef~~~~~~~~l~~l~~~~~~~~~~~~~A~il~ 82 (710)
T PF07393_consen 3 EAIDSFQQLDERISEVSQKAVHIGDQLESADRQRSRAIEAIELIPYYNEFLSKGSYSNLEKLFRTFTDPEDPEEAAKILR 82 (710)
T ss_pred HHHHHHHHHHHHHhHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCccchHHHhhcccCccchHHHHHHHH
Confidence 44556778888888877766665444 1122223345666653 10 1110011112255555555
Q ss_pred HHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccccCCCCCCcccccccccCCC
Q 041189 97 RLIDNLSVGSDNEVMDRAETAIQAAMSRLEDDFRHLLISNTIPLDADGLYGSMRRVSLSFAANDGEIDGEFESFGEVSDG 176 (635)
Q Consensus 97 ~~~~~~~~~~~~~~l~~a~~Ll~~am~~Le~EF~~lL~~~s~~~~p~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 176 (635)
++..+-+...+.+....+..-++.....+|+..-+-...+-. .
T Consensus 83 ~L~~ls~~~~~~~~~~~~~~~I~~~~e~fE~~LL~eFe~ay~---------------------~---------------- 125 (710)
T PF07393_consen 83 NLLRLSKELSDIPGFEEARENIEKYCEIFENALLREFEIAYR---------------------E---------------- 125 (710)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------c----------------
Confidence 554443322134445566666777777776655443332110 0
Q ss_pred CccccccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHCCCchHHHHHHHHhhHHHHHHHHHhhCC-CCCChHHhhhhchh
Q 041189 177 SVRFHERGASLGEEASVDLIEPAAVDDLKQIADRMIRSGYEKECFQVYSNIRRGALDECLAILGV-EKLSMEEVQKVEWS 255 (635)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~i~~~~v~~L~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l~~sL~~L~~-e~~s~~~v~k~~w~ 255 (635)
.-...++.+|..|...+-+..|++.|.+.+.-+.+. ..++- +...-+. .|+
T Consensus 126 ----------------------~d~~~M~~~A~vL~~fngg~~~i~~fi~k~~~f~~~--~~~~~~~~~~~~~----~~~ 177 (710)
T PF07393_consen 126 ----------------------GDYERMKEFAKVLLEFNGGSSCIDFFINKHEFFIDE--DQLDESNGFEDEE----IWE 177 (710)
T ss_pred ----------------------CCHHHHHHHHHHHHHcCCCcHHHHHHHHhChhhhhh--hhhccccccchhH----HHH
Confidence 013678899999998777779999999988655522 11110 1100000 121
Q ss_pred hh----------hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccc----chhhHHHhhhhhhHHHHHHHH
Q 041189 256 SL----------DEKMKKWIQAVKIAGKLLLSGEKKLCDHIFSEAETL----GDDCFNETAKGCVKPLLIFAE 314 (635)
Q Consensus 256 ~l----------e~~i~~wi~a~~~~vk~L~~~Er~L~~~vf~~~~~~----~~~~F~~i~~~~~~~Ll~f~~ 314 (635)
.+ ..........+ +..+..|.++.+.|||...++ -..+|.++...-+..+|+-+.
T Consensus 178 ~l~d~~~~~~~~~~~l~~~~~~i----~~~i~~e~~iI~~VFp~~~~Vm~~fiervf~~~I~~~i~~lL~~a~ 246 (710)
T PF07393_consen 178 KLSDPDSHPPINEESLDAFFEDI----RDVINEESKIIDRVFPNPEPVMQKFIERVFEQVIQEYIESLLEEAS 246 (710)
T ss_pred hccCcccccccchHHHHHHHHHH----HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 11 12233333333 335789999999999886542 234566665555555555443
No 11
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=71.42 E-value=1e+02 Score=35.26 Aligned_cols=90 Identities=19% Similarity=0.313 Sum_probs=50.9
Q ss_pred CChhHHHHHHHHHHHHHhhhHhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCccccchHHHH
Q 041189 321 RSSEKLFRILDMYDALADVLPNLEAMITSELVCSEVWGVLNALGEAAKGTFAEFENAVQSETSKKPMQGGEIHPLTRYVM 400 (635)
Q Consensus 321 rspeklf~lLdmye~L~~l~p~~~~lf~~~~v~~~~~~~l~~L~~~~~~~~~ef~~~I~~~~sk~~~~dG~VH~lT~~vm 400 (635)
++++..|.+|+.|..|. ..|.+...+ ......++..+.+-+..+-..|...-.......|+..-..+|++. .+
T Consensus 326 ~s~~~~~~ll~~f~~L~-~Rp~I~~~l-----~~~~~~ll~~~~~ei~~~~~~f~~~~~~~~~~~~~~~~~~Ppvag-~i 398 (579)
T PF08385_consen 326 SSPEEAFRLLQKFKSLL-NRPRIRKAL-----QEKYEQLLQQFKEEIDQLKKIFDNQKEKSETDNPPLPRNLPPVAG-AI 398 (579)
T ss_pred CCHHHHHHHHHHHHhHh-cchHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCCcHHHH-HH
Confidence 67888999999999997 566665544 344555666666555555555554432111223444555555444 44
Q ss_pred HHHHHHH----hhHHHHHHhh
Q 041189 401 NYVKLLV----DYSDTLNKLL 417 (635)
Q Consensus 401 nyl~~L~----~y~~~L~~lL 417 (635)
.+.+.|. .+...+..++
T Consensus 399 ~w~r~L~~ri~~~~~~~~~~~ 419 (579)
T PF08385_consen 399 IWARQLERRIKEPMQRLKSLL 419 (579)
T ss_pred HHHHHHHHHHhHHHHHHHHhc
Confidence 4444443 4444555444
No 12
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=61.12 E-value=45 Score=39.95 Aligned_cols=51 Identities=27% Similarity=0.350 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccccC-ChHHHHHHHHHHHHHHHHHHHHHHH
Q 041189 537 KVTLKERFRSFNLCFEEIYRVQTAWKVP-DPQLREELRISISEKVIPAYRSFMG 589 (635)
Q Consensus 537 r~~lKerfk~FN~~FeE~~~~Q~~w~Vp-D~~LRe~Lr~~i~~~v~PaY~~F~~ 589 (635)
|+.|-..+|.=| |++++.+|-.-.+. ...|.+.+|.+....|||+|.+=.+
T Consensus 1014 kenI~ql~KSkn--l~dtvar~i~~~~Qtsg~lQ~a~resm~SsviPafEKScq 1065 (1283)
T KOG1916|consen 1014 KENINQLLKSKN--LEDTVARQIQAQFQTSGPLQEALRESMESSVIPAFEKSCQ 1065 (1283)
T ss_pred HHHHHHHHhhcc--HHHHHHHHHHHHHhccchHHHHHHHHhhhhccHHHHHHHH
Confidence 445555566666 77777666555542 2239999999999999999987544
No 13
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=55.61 E-value=35 Score=32.54 Aligned_cols=77 Identities=10% Similarity=0.083 Sum_probs=58.6
Q ss_pred ccHHHHHHHHHhhcCCC-C---CC-C--hhhHHHHHHHHHHHHHHHhhccCCCC----chHHHHHHHHHHHHHHHHHHHH
Q 041189 61 HSFESAEKIILRHDSNS-N---WD-S--PEEFNEFIGAVDDILRLIDNLSVGSD----NEVMDRAETAIQAAMSRLEDDF 129 (635)
Q Consensus 61 ~~l~~~e~vi~~~~~~~-i---~~-~--~~~~~~yL~av~~l~~~~~~~~~~~~----~~~l~~a~~Ll~~am~~Le~EF 129 (635)
..-+.+...+.+|+.-. | +. | .-.-+.|+.-+.+|-..++|+..+++ ...+.|-+.++.+||.-+-.-|
T Consensus 63 ~~ae~I~~~L~yF~~Ld~itr~Ln~p~~sV~~~~F~~~L~~LD~cl~Fl~~h~~fkea~~Y~~rf~q~ltRAl~lIk~y~ 142 (157)
T PF04136_consen 63 ELAEEISEKLQYFEELDPITRRLNSPGSSVNSDSFKPMLSRLDECLEFLEEHPNFKEAEVYLIRFRQCLTRALTLIKNYV 142 (157)
T ss_pred HHHHHHHHHhHHHhhHHHHHHHHcCCCCcccchHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777655 1 22 2 23468999999999999999986554 5578899999999999999999
Q ss_pred HHHHHhcC
Q 041189 130 RHLLISNT 137 (635)
Q Consensus 130 ~~lL~~~s 137 (635)
...|..-+
T Consensus 143 ~~~l~~~~ 150 (157)
T PF04136_consen 143 VNTLRSAT 150 (157)
T ss_pred HHHHHHHH
Confidence 88887654
No 14
>COG2733 Predicted membrane protein [Function unknown]
Probab=55.59 E-value=97 Score=33.83 Aligned_cols=89 Identities=17% Similarity=0.223 Sum_probs=57.8
Q ss_pred HHHHHHHhHHHHHHhhcccCCCCCCCccchHHHHH-HHHHHHHHHHHHHHhccccccCChHHHHHHHHHHH---HHHHHH
Q 041189 508 ATSYLRASWSKALACLKDEGIGGGSTNASKVTLKE-RFRSFNLCFEEIYRVQTAWKVPDPQLREELRISIS---EKVIPA 583 (635)
Q Consensus 508 ~~~Y~~~sW~~vl~~L~~~~~~~~~~~~~r~~lKe-rfk~FN~~FeE~~~~Q~~w~VpD~~LRe~Lr~~i~---~~v~Pa 583 (635)
...|....|+..-.++..+--.. -..++. -++.|+.-++++ +.|++||.+|..-+. +.+++-
T Consensus 291 i~~~~~~~w~~~~~~l~~D~e~~------~s~l~~~l~~~~~~~Ge~l--------~~D~~lr~kln~~~~~aa~~l~e~ 356 (415)
T COG2733 291 IATAAGDMWTSLSEWLKEDYESE------DSMLRKRLARAVQSVGEEL--------IADDALRAKLNEHLVQAAERLAEE 356 (415)
T ss_pred HHHHHHHHHHHHHHHHHhcccCc------hhHHHHHHHHHHHHHHHHH--------hccHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999987653211 123433 467788777776 359999999876543 345555
Q ss_pred HHHHHHHhhhhhccCCCCCcccccCHHHHHHHHHh
Q 041189 584 YRSFMGRFRSQLESGRHAGKYIKYTPEDLESYLLD 618 (635)
Q Consensus 584 Y~~F~~r~~~~~~~~k~~~KyiKYtpe~le~~L~~ 618 (635)
|..++.++-. +.-=+|+.+++.++|..
T Consensus 357 ~~~~it~~I~--------dTv~~wD~~elsr~iel 383 (415)
T COG2733 357 KHAEITKHIS--------DTVKRWDAEELSRQIEL 383 (415)
T ss_pred HhHHHHHHHH--------HHHhhcCHHHHHHHHHH
Confidence 5555555532 11225899998888764
No 15
>KOG3821 consensus Heparin sulfate cell surface proteoglycan [Signal transduction mechanisms]
Probab=48.85 E-value=35 Score=38.57 Aligned_cols=71 Identities=20% Similarity=0.227 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccCCCCCcccccCHHHHHHH
Q 041189 537 KVTLKERFRSFNLCFEEIYRVQTAWKVPDPQLREELRISISEKVIPAYRSFMGRFRSQL-ESGRHAGKYIKYTPEDLESY 615 (635)
Q Consensus 537 r~~lKerfk~FN~~FeE~~~~Q~~w~VpD~~LRe~Lr~~i~~~v~PaY~~F~~r~~~~~-~~~k~~~KyiKYtpe~le~~ 615 (635)
|..+-.+.+.|++.|+|+.+.= .+....+..-.|+++|-.....+ ++-+.-.-|+-++-+.+|++
T Consensus 97 r~~l~s~~r~F~E~f~ell~~a--------------e~~l~~mF~~tYg~ly~qn~~~~~dlFtel~~y~~~~~~nlee~ 162 (563)
T KOG3821|consen 97 RFVLASNARKFDEFFLELLRNA--------------ENSLNAMFSKTYGSLYPQNAELFNDLFTELKLYYVGSNVNLEET 162 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 5667778999999999998752 33455677788998887765433 22222446888999999999
Q ss_pred HHhhhC
Q 041189 616 LLDLFE 621 (635)
Q Consensus 616 L~~LF~ 621 (635)
|++||.
T Consensus 163 l~eff~ 168 (563)
T KOG3821|consen 163 LNEFFA 168 (563)
T ss_pred HHHHHH
Confidence 999985
No 16
>PHA01746 hypothetical protein
Probab=45.45 E-value=10 Score=33.55 Aligned_cols=23 Identities=26% Similarity=0.720 Sum_probs=16.6
Q ss_pred HHHHHHHHhhhhhccCCCCCcccccCHHH
Q 041189 583 AYRSFMGRFRSQLESGRHAGKYIKYTPED 611 (635)
Q Consensus 583 aY~~F~~r~~~~~~~~k~~~KyiKYtpe~ 611 (635)
+-..|+++|.+.+ .|||||||.+
T Consensus 75 lIa~FLeKYS~~L------nkYVkFs~~n 97 (131)
T PHA01746 75 LIAEFLEKYSDFL------NEYVKFTPRN 97 (131)
T ss_pred HHHHHHHHHHHHH------HHHeeeccCC
Confidence 4456888888754 5888888854
No 17
>PF15264 TSSC4: Tumour suppressing sub-chromosomal transferable candidate 4
Probab=45.44 E-value=6.3 Score=35.54 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=19.4
Q ss_pred HhhhhhccCCCCCcccccCHHHHH
Q 041189 590 RFRSQLESGRHAGKYIKYTPEDLE 613 (635)
Q Consensus 590 r~~~~~~~~k~~~KyiKYtpe~le 613 (635)
+-..+.++-+||+||.|||-+++.
T Consensus 50 ~~~~vPDYv~nP~KwTkYSL~dv~ 73 (115)
T PF15264_consen 50 RSPGVPDYVRNPEKWTKYSLDDVS 73 (115)
T ss_pred cCCCCCCCcCCcccceeeecCCCc
Confidence 334456888999999999999983
No 18
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.68 E-value=3.1e+02 Score=26.73 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=19.2
Q ss_pred cccCCCCHHHHHHHHHHHHHHHH
Q 041189 191 ASVDLIEPAAVDDLKQIADRMIR 213 (635)
Q Consensus 191 ~~~~~i~~~~v~~L~~Ia~~m~~ 213 (635)
..++.+.|.++.||...++.+..
T Consensus 117 ~~ip~vDp~VL~DlE~~~~el~~ 139 (222)
T KOG4514|consen 117 RNIPEVDPSVLSDLELEAQELAS 139 (222)
T ss_pred CCCCCCChHHHHHHHHHHHHHHH
Confidence 45788999999999988887764
No 19
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=24.35 E-value=2.3e+02 Score=35.25 Aligned_cols=44 Identities=18% Similarity=0.219 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHhhccCCCC---chHHHHHHHHHHHHHHHHHH
Q 041189 84 EFNEFIGAVDDILRLIDNLSVGSD---NEVMDRAETAIQAAMSRLED 127 (635)
Q Consensus 84 ~~~~yL~av~~l~~~~~~~~~~~~---~~~l~~a~~Ll~~am~~Le~ 127 (635)
.+..|.+.+++|..--..-+.... ....++|..|+..|+.+|.+
T Consensus 1665 ~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~ 1711 (1758)
T KOG0994|consen 1665 ILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDR 1711 (1758)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777543222111111 34667888888888888753
No 20
>PRK05590 hypothetical protein; Provisional
Probab=24.21 E-value=2.9e+02 Score=26.63 Aligned_cols=75 Identities=28% Similarity=0.363 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhhcCCCcccchhhHHHhhhh---hhHHHHHHHHHHHhccC------------------ChhHHHHHHHH
Q 041189 274 LLLSGEKKLCDHIFSEAETLGDDCFNETAKG---CVKPLLIFAEAVAIGKR------------------SSEKLFRILDM 332 (635)
Q Consensus 274 ~L~~~Er~L~~~vf~~~~~~~~~~F~~i~~~---~~~~Ll~f~~ava~~~r------------------speklf~lLdm 332 (635)
-+|..|+.+..++......+-...+.++|.. .+..+..|-+.|.-+-. .+|||+ ..|
T Consensus 26 ~y~~~ek~iy~~iL~~~~~~~~gtv~ela~k~~~~~~~~~GfldGin~sl~~~~~le~~~edt~v~l~id~ekLy--~nM 103 (166)
T PRK05590 26 EYGSVEKNIYTQILANHKEVVEGTVKELAEKFGTSVVFFMGFLDGINDSLKEPLDLEKLEEDTEVSLDIDFEKLY--YNM 103 (166)
T ss_pred HHHHHHHHHHHHHHcCCCceeeeeHHHHHHHhCCChhhhhhhhhcchhhhCCCCCccccccCceEEEeeCHHHHH--HHH
Confidence 3678899999999988765555555666633 33446677777643221 246764 245
Q ss_pred HHHHHh---hhHhHHHhhhch
Q 041189 333 YDALAD---VLPNLEAMITSE 350 (635)
Q Consensus 333 ye~L~~---l~p~~~~lf~~~ 350 (635)
+++-++ -+|.++.+|+++
T Consensus 104 ~~aka~~lY~l~~w~~i~~~e 124 (166)
T PRK05590 104 LDAKADWLYNLPQWEAIFSEE 124 (166)
T ss_pred HHHHHHHHhccHhHHhhccHH
Confidence 556655 478999999986
No 21
>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.
Probab=24.21 E-value=66 Score=25.60 Aligned_cols=25 Identities=28% Similarity=0.631 Sum_probs=15.6
Q ss_pred cCCCCCcccccCHHHHHHHHHhhhC
Q 041189 597 SGRHAGKYIKYTPEDLESYLLDLFE 621 (635)
Q Consensus 597 ~~k~~~KyiKYtpe~le~~L~~LF~ 621 (635)
+.+.+-.++++++|+||++|-+|-.
T Consensus 18 ~~~~~P~W~~~~~~eVe~~I~klak 42 (60)
T PF08069_consen 18 YRRSPPSWLKYSPEEVEELIVKLAK 42 (60)
T ss_dssp S-SS--TT--S-HHHHHHHHHHHCC
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHH
Confidence 3455668999999999999998853
No 22
>PF01153 Glypican: Glypican; InterPro: IPR001863 Glypicans [, ] are a family of heparan sulphate proteoglycans which are anchored to cell membranes by a glycosylphosphatidylinositol (GPI) linkage. Six members (GPC1-6) are known in vertebrates []. Structurally, these proteins consist of three separate domains: A signal sequence; An extracellular domain of about 500 residues that contains 12 conserved cysteines probably involved in disulphide bonds and which also contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A C-terminal hydrophobic region which is post-translationally removed after formation of the GPI-anchor. ; GO: 0043395 heparan sulfate proteoglycan binding, 0005578 proteinaceous extracellular matrix, 0016020 membrane; PDB: 3ODN_A 4AD7_A 4ACR_C.
Probab=24.10 E-value=1.9e+02 Score=33.42 Aligned_cols=70 Identities=23% Similarity=0.295 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccCCCCCcccccCHHHHHHHH
Q 041189 538 VTLKERFRSFNLCFEEIYRVQTAWKVPDPQLREELRISISEKVIPAYRSFMGRFRSQL-ESGRHAGKYIKYTPEDLESYL 616 (635)
Q Consensus 538 ~~lKerfk~FN~~FeE~~~~Q~~w~VpD~~LRe~Lr~~i~~~v~PaY~~F~~r~~~~~-~~~k~~~KyiKYtpe~le~~L 616 (635)
..+..+.+.|.+.|+++.+.= .+....+..-.|+.+|....... ++-..-..|+..+.-.|+.++
T Consensus 90 ~~l~~~~~~F~~~f~~ll~~s--------------e~~~~~~F~~~Y~~ly~~~~~~~~~lf~~l~~y~~g~~~~l~~~l 155 (557)
T PF01153_consen 90 HLLSTRARKFDEFFRELLRQS--------------ENSLHSMFSRTYGSLYPQNRPIFQDLFTDLRRYYLGSNVNLEEAL 155 (557)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHTTHHHHCTHHHHHHHHHHHHHHHCCS-S-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHH
Confidence 356667888999998887542 23344555667777666654432 111223457778888999999
Q ss_pred HhhhC
Q 041189 617 LDLFE 621 (635)
Q Consensus 617 ~~LF~ 621 (635)
+++|.
T Consensus 156 ~~Ff~ 160 (557)
T PF01153_consen 156 NEFFD 160 (557)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99885
No 23
>PF15335 CAAP1: Caspase activity and apoptosis inhibitor 1
Probab=22.23 E-value=72 Score=25.71 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=20.0
Q ss_pred HHHHHHhhHHHHHHHHHhhCCCC
Q 041189 221 FQVYSNIRRGALDECLAILGVEK 243 (635)
Q Consensus 221 ~~~Y~~~R~~~l~~sL~~L~~e~ 243 (635)
+..|.+-|.+.+++++..+|..+
T Consensus 5 is~Yi~Dr~Eml~Q~F~~l~~kk 27 (64)
T PF15335_consen 5 ISFYIDDRKEMLRQCFSVLKEKK 27 (64)
T ss_pred HHHHHccHHHHHHHHHHHcCHHH
Confidence 56899999999999999998653
No 24
>TIGR02553 SipD_IpaD_SspD type III effector protein IpaD/SipD/SspD. These proteins are found within type III secretion operons and have been shown to be secreted by that system.
Probab=21.62 E-value=3.4e+02 Score=28.73 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=27.1
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Q 041189 490 KLLGDNWVRKRRGQVRQYATSYLRASWSKALACLKDE 526 (635)
Q Consensus 490 ~lLG~~w~~~~~~~i~~~~~~Y~~~sW~~vl~~L~~~ 526 (635)
.-++++.+..+...+++|..-|+ +.+.+++-+.+-
T Consensus 115 ~~Ik~dYldvYa~lvk~YTd~yQ--~fn~~lSkls~~ 149 (308)
T TIGR02553 115 GKIGDSYLGVYENVVEGYTDFYQ--AFSDILSKMQDW 149 (308)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHHhhh
Confidence 34567788889999999988776 477898888553
No 25
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=20.90 E-value=7.9e+02 Score=24.01 Aligned_cols=82 Identities=20% Similarity=0.266 Sum_probs=55.2
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHCCCchHHHHHHHHhhHHHHHHHHHhhCCC-CCChHHhhhhchhhhhHHHHHHHHHHHH
Q 041189 192 SVDLIEPAAVDDLKQIADRMIRSGYEKECFQVYSNIRRGALDECLAILGVE-KLSMEEVQKVEWSSLDEKMKKWIQAVKI 270 (635)
Q Consensus 192 ~~~~i~~~~v~~L~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l~~sL~~L~~e-~~s~~~v~k~~w~~le~~i~~wi~a~~~ 270 (635)
++|.+..+.-.+|-..|..+.. ++-..-..+|+.+++. ++.+..+ .+|-+++.+. -+.++...+.|+..+.-
T Consensus 101 ~iP~lT~E~R~elvK~~k~~~E-----~aKv~iRniRr~~~~~-iKk~~k~~~iseD~~k~~-e~eiQkltd~~i~~id~ 173 (185)
T PRK00083 101 PIPPLTEERRKELVKQVKKEAE-----EAKVAIRNIRRDANDK-LKKLEKDKEISEDELKRA-EDEIQKLTDKYIKKIDE 173 (185)
T ss_pred cCCCCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH-HHHHhhcCCCChHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4677778888888888887765 4555678899998877 5555433 3455555544 34567778888888775
Q ss_pred HHHHHHHHHHHHH
Q 041189 271 AGKLLLSGEKKLC 283 (635)
Q Consensus 271 ~vk~L~~~Er~L~ 283 (635)
++ -.-|+.|+
T Consensus 174 ~~---~~Kekeim 183 (185)
T PRK00083 174 LL---AAKEKEIM 183 (185)
T ss_pred HH---HHHHHHHh
Confidence 53 35666654
No 26
>KOG4344 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.44 E-value=2.7e+02 Score=32.32 Aligned_cols=66 Identities=20% Similarity=0.379 Sum_probs=35.7
Q ss_pred hhHhhccHH-HHHHhhccc-hh--hhhhccHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccCCCCCCCccchHHHHHHH
Q 041189 469 YIFLMNNIL-YIVQKVKDS-EL--GKLLGDNWVRKRRGQVRQYATSYLRASWSKALACLKDEGIGGGSTNASKVTLKERF 544 (635)
Q Consensus 469 ~iFLmNN~~-yI~~~v~~s-~L--~~lLG~~w~~~~~~~i~~~~~~Y~~~sW~~vl~~L~~~~~~~~~~~~~r~~lKerf 544 (635)
-||+.||.| ||...+-.| ++ ..-+|+. +.-..+..-...|+ +|-+- +-.++++|
T Consensus 968 LiffiNnLHahIMeailhStgleFehqieEa---KdldeLiiiHdehL--atihd-----------------hClLrdef 1025 (1121)
T KOG4344|consen 968 LIFFINNLHAHIMEAILHSTGLEFEHQIEEA---KDLDELIIIHDEHL--ATIHD-----------------HCLLRDEF 1025 (1121)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHhhh---cCHHHHHHHHHHHH--HHHHH-----------------hhhHHHHH
Confidence 389999987 777777544 32 2222211 11111222223333 45432 34567789
Q ss_pred HHHHHHHHHHHH
Q 041189 545 RSFNLCFEEIYR 556 (635)
Q Consensus 545 k~FN~~FeE~~~ 556 (635)
|.|-.+.+.++.
T Consensus 1026 kafkeAidkifh 1037 (1121)
T KOG4344|consen 1026 KAFKEAIDKIFH 1037 (1121)
T ss_pred HHHHHHHHHHHH
Confidence 999888887754
Done!