Query 041189
Match_columns 635
No_of_seqs 235 out of 491
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 07:23:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041189.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041189hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pft_A Exocytosis protein; hel 100.0 1E-106 3E-111 917.1 36.5 521 66-624 2-571 (571)
2 2b1e_A Exocyst complex compone 100.0 1.6E-93 5.3E-98 805.9 38.3 504 60-620 6-563 (564)
3 2d2s_A Exocyst complex compone 60.9 1.1E+02 0.0039 29.6 13.1 95 201-317 91-188 (235)
4 2x5h_A ORF 131; viral protein; 51.5 4.9 0.00017 32.4 1.1 21 583-609 76-96 (97)
5 2wvq_A Small S protein; prion- 37.9 1E+02 0.0035 29.7 8.5 121 492-619 38-167 (225)
6 1zva_A E2 glycoprotein; membra 29.6 24 0.00084 27.9 1.9 36 16-51 14-50 (77)
7 4e9f_A Methyl-CPG-binding doma 28.6 44 0.0015 30.6 3.8 47 550-619 35-81 (161)
8 3nft_A Translocator protein BI 25.1 89 0.0031 31.2 5.5 44 579-623 142-191 (303)
9 2ket_A Cathelicidin-6; antimic 19.5 56 0.0019 19.9 1.7 17 543-559 2-18 (27)
10 2cqn_A Formin-binding protein 18.4 87 0.003 24.9 3.2 25 122-146 8-32 (77)
No 1
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=100.00 E-value=9.7e-107 Score=917.13 Aligned_cols=521 Identities=21% Similarity=0.391 Sum_probs=444.8
Q ss_pred HHHHHHhhcCCC-----CCC-ChhhHHHHHHHHHHHHHHHhhccC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 041189 66 AEKIILRHDSNS-----NWD-SPEEFNEFIGAVDDILRLIDNLSV-GSDNEVMDRAETAIQAAMSRLEDDFRHLLISNTI 138 (635)
Q Consensus 66 ~e~vi~~~~~~~-----i~~-~~~~~~~yL~av~~l~~~~~~~~~-~~~~~~l~~a~~Ll~~am~~Le~EF~~lL~~~s~ 138 (635)
||+||++||+.. ||+ |+++++.||+||++|++++++|.. +.++..++|+++|+++||.+||+||++||.+|+.
T Consensus 2 ae~v~~~~d~~~~~e~~i~~gp~~~l~~yL~av~~l~~a~~~~~~~~~~s~~l~~~~~Ll~~a~~~Le~eF~~lL~~~~~ 81 (571)
T 2pft_A 2 SDHVISYYHVASDTEKIIREGPTGRLEEYLGSMAKIQKAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSK 81 (571)
T ss_dssp -CTTSTHHHHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhhhhhhhcCcHhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 678999999976 777 889999999999999999999984 4457789999999999999999999999999999
Q ss_pred CCCCccccccccccccccccCCCCCCcccccccccCCCCccccccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHCCCch
Q 041189 139 PLDADGLYGSMRRVSLSFAANDGEIDGEFESFGEVSDGSVRFHERGASLGEEASVDLIEPAAVDDLKQIADRMIRSGYEK 218 (635)
Q Consensus 139 ~~~p~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~L~~Ia~~m~~~g~~~ 218 (635)
|++|+.+++++++ +++ + +..+.+.++.+||+++++|+.||++|+.+||.+
T Consensus 82 ~~~p~~ll~~~~~-------~~~-----~------------------~~~~~~~~~~~~~~~~~~L~~Ia~~m~~~g~~~ 131 (571)
T 2pft_A 82 VVSPVLLLDLISA-------DDE-----L------------------EVQEDVVLEHLPESVLRDVVRISRWLVEYGRNQ 131 (571)
T ss_dssp CCCHHHHHHHHHH-------TCC-----C------------------C--------SSCHHHHHHHHHHHHHHHHHCSCC
T ss_pred CCChHHHHhcccc-------ccc-----c------------------CccccccccCCCHHHHHHHHHHHHHHHHcCCch
Confidence 9999988765543 000 0 001122367899999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHhh------------------------CCCCCChHHhhhhchhhhhHHHHHHHHHHHHHHHH
Q 041189 219 ECFQVYSNIRRGALDECLAIL------------------------GVEKLSMEEVQKVEWSSLDEKMKKWIQAVKIAGKL 274 (635)
Q Consensus 219 e~~~~Y~~~R~~~l~~sL~~L------------------------~~e~~s~~~v~k~~w~~le~~i~~wi~a~~~~vk~ 274 (635)
+|+++|+++|+++|+++|..| |.++.+..++++ +|+.++.+|++|+++++++++
T Consensus 132 ~~~~~Y~~~R~~~l~~sL~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~i~~wi~~~~~~~~- 209 (571)
T 2pft_A 132 DFMNVYYQIRSSQLDRSIKGLKEHFRKSSSSSGVPYSPAIPNKRKDTPTKKPIKRPG-RDDMLDVETDAYIHCVSAFVK- 209 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------CHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccc-chHHHHHHHHHHHHHHHHHHH-
Confidence 999999999999999999999 444555566655 799999999999999999988
Q ss_pred HHHHHHHHHhhhcCCCcccchhhHHHhhhhhhHHHHHHHHHHH-hccCCh--hHHHHHHHHHHH---HHhhhHhHHHhhh
Q 041189 275 LLSGEKKLCDHIFSEAETLGDDCFNETAKGCVKPLLIFAEAVA-IGKRSS--EKLFRILDMYDA---LADVLPNLEAMIT 348 (635)
Q Consensus 275 L~~~Er~L~~~vf~~~~~~~~~~F~~i~~~~~~~Ll~f~~ava-~~~rsp--eklf~lLdmye~---L~~l~p~~~~lf~ 348 (635)
||++||+||++||++. .+..||.+||++++.+|++||++|+ .++|+| +++|.+++||+. |.+++|+|+.+|.
T Consensus 210 l~~~Er~L~~~vf~~~--~~~~~F~~i~~~~~~~ll~f~e~v~~~~kr~~~~~~~~~~l~l~~~l~~l~~l~p~~~~~f~ 287 (571)
T 2pft_A 210 LAQSEYRLLMEIIPEH--HQKKTFDSLIQDALDGLMLEGENIVSAARKAIIRHDFSTVLTVFPILRHLKQTKPEFDQVLQ 287 (571)
T ss_dssp HHHHHHHHHHHHSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTTTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8999999999999873 6789999999999999999999997 578888 666555555554 9999999999999
Q ss_pred ch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCCCCC-CCccccchHHHHHHHHHHHhhHHHHHHhhccCCCCC
Q 041189 349 SE--LVCSEVWGVLNALGEAAKGTFAEFENAVQSET-SKKPMQ-GGEIHPLTRYVMNYVKLLVDYSDTLNKLLEHDEIDT 424 (635)
Q Consensus 349 ~~--~v~~~~~~~l~~L~~~~~~~~~ef~~~I~~~~-sk~~~~-dG~VH~lT~~vmnyl~~L~~y~~~L~~lL~~~~~~~ 424 (635)
|+ .++.++.+++++|+++++++|.||.+.|++++ ++.++| ||+|||+|+||||||+.|++|+++|..+|.+.++++
T Consensus 288 g~~~~~~~~~~~~l~~L~~~~~~~f~ef~~~i~~~~~s~~~vp~dg~Vh~lT~~vmnyl~~L~~y~~~l~~il~~~~~~~ 367 (571)
T 2pft_A 288 GTAASTKNKLPGLITSMETIGAKALEDFADNIKNDPDKEYNMPKDGTVHELTSNAILFLQQLLDFQETAGAMLASQETSS 367 (571)
T ss_dssp TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSGGGSCTTCCCCHHHHHHHHHHHHHHHTHHHHHHHHHTTC---
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCccchHHHHHHHHHHHHHhhHHHHHHHHhccCCCc
Confidence 87 67899999999999999999999999999997 777666 999999999999999999999999999998764321
Q ss_pred CCccCCcCCcCCCChHHHHHHHHHHHHHHHHHHhhhhcCCccchhhHhhccHHHHHHhhccchhhhhhc---cHHHHHHH
Q 041189 425 GSLQIDADSLESMSPIARRLLLLITCLESNIEEKSRLYDDSAMQYIFLMNNILYIVQKVKDSELGKLLG---DNWVRKRR 501 (635)
Q Consensus 425 ~~~~~~~~~~~~~~~l~~~i~~ii~~L~~nLe~KSk~ykd~aL~~iFLmNN~~yI~~~v~~s~L~~lLG---~~w~~~~~ 501 (635)
.. .+..+..+.++|+.++.+||++|+.|||.|||.|+|++|++||||||+|||+++|++|+|..+|| ++|+++|+
T Consensus 368 ~~--~~~~~~~~~~~l~~~i~~ii~~L~~~Le~ksk~y~d~~l~~iFLmNN~~yI~~~v~~s~l~~llg~~~~~~~~~~~ 445 (571)
T 2pft_A 368 SA--TSYSSEFSKRLLSTYICKVLGNLQLNLLSKSKVYEDPALSAIFLHNNYNYILKSLEKSELIQLVAVTQKTAERSYR 445 (571)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHTTTTTSTHHHHHHTTCTTHHHHHH
T ss_pred cc--ccCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHhhHHHHHHHHhccchHHHhCcchhHHHHHHH
Confidence 10 00001124578999999999999999999999999999999999999999999999999999999 68999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhcccCCCC---C--CCccchHHHHHHHHHHHHHHHHHHHhccccccCChHHHHHHHHHH
Q 041189 502 GQVRQYATSYLRASWSKALACLKDEGIGG---G--STNASKVTLKERFRSFNLCFEEIYRVQTAWKVPDPQLREELRISI 576 (635)
Q Consensus 502 ~~i~~~~~~Y~~~sW~~vl~~L~~~~~~~---~--~~~~~r~~lKerfk~FN~~FeE~~~~Q~~w~VpD~~LRe~Lr~~i 576 (635)
.+++||++.| +.+|++|++||.+++.+. | .++++|+.+||||++||.+|||+|++|+.|+||||+||++||.+|
T Consensus 446 ~~i~~~~~~Y-~~sW~~v~~~L~~~~~~~~~~g~~ls~~~r~~iKe~fk~Fn~~Fee~~~~q~~w~VpD~~LR~~Lr~~i 524 (571)
T 2pft_A 446 EHIEQQIQTY-QRSWLKVTDYIAEKNLPVFQPGVKLRDKERQMIKERFKGFNDGLEELCKIQKVWAIPDTEQRDKIRQAQ 524 (571)
T ss_dssp HHHHHHHHHH-HGGGHHHHTTTSGGGSCSSCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHhhhccCCcCCCCCCcCcccHHHHHHHHHHHHHHHHHHHHhCCcccCcCHHHHHHHHHHH
Confidence 9999999999 899999999999876442 2 246789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhccCCCCCcccccCHHHHHHHHHhhhCCCC
Q 041189 577 SEKVIPAYRSFMGRFRSQLESGRHAGKYIKYTPEDLESYLLDLFEGSP 624 (635)
Q Consensus 577 ~~~v~PaY~~F~~r~~~~~~~~k~~~KyiKYtpe~le~~L~~LF~g~~ 624 (635)
+++|+|+|++||+||++ ++|+|||+|||||||||||++|++||+|++
T Consensus 525 ~~~v~paY~~F~~r~~~-~~~~k~~~KyiKytpe~le~~L~~LFeg~a 571 (571)
T 2pft_A 525 KDIVKETYGAFLHRYGS-VPFTKNPEKYIKYRVEQVGDMIDRLFDTSA 571 (571)
T ss_dssp HHHHHHHHHHHHHHHHS-SCCCSCHHHHCCCCHHHHHHHHHTSSSCC-
T ss_pred HHHHHHHHHHHHHHhCc-CcccCCCCCccccCHHHHHHHHHHHhCCCC
Confidence 99999999999999999 689999999999999999999999999974
No 2
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=100.00 E-value=1.6e-93 Score=805.91 Aligned_cols=504 Identities=17% Similarity=0.253 Sum_probs=420.5
Q ss_pred CccHHHHHHHHHhhcCCC-----CCC-Ch-hhHHHHHHHHHHHHHHHhhccCCC-C-------chHHHHHHHHHHHHHHH
Q 041189 60 PHSFESAEKIILRHDSNS-----NWD-SP-EEFNEFIGAVDDILRLIDNLSVGS-D-------NEVMDRAETAIQAAMSR 124 (635)
Q Consensus 60 e~~l~~~e~vi~~~~~~~-----i~~-~~-~~~~~yL~av~~l~~~~~~~~~~~-~-------~~~l~~a~~Ll~~am~~ 124 (635)
|++|+++++|..+++... |.. |. ++++.||+||++|+++++||+.++ + .+.+.++.+|+++|+.+
T Consensus 6 d~~l~~i~~v~~~~~~~~~~e~iI~~Gp~~~~l~~Yl~al~rl~~al~~~~~~n~~s~e~~~f~g~l~~~~~L~~~g~~~ 85 (564)
T 2b1e_A 6 ESTLNSVASVKDLANEASKYEIILQKGINQVGLKQYTQVVHKLDDMLEDIQSGQANREENSEFHGILTHLEQLIKRSEAQ 85 (564)
T ss_dssp --CCGGGCCHHHHHHHHHHHHHHHHTCHHHHCHHHHHHHHHHHHHHHHHHHC----CCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhHHHHHHHHHHHHHHHHH
Confidence 678888999999998766 445 44 799999999999999999998544 2 23699999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCccccccccccccccccCCCCCCcccccccccCCCCccccccCCCCCCCcccCCCCHHHHHHH
Q 041189 125 LEDDFRHLLISNTIPLDADGLYGSMRRVSLSFAANDGEIDGEFESFGEVSDGSVRFHERGASLGEEASVDLIEPAAVDDL 204 (635)
Q Consensus 125 Le~EF~~lL~~~s~~~~p~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~L 204 (635)
||.||+.||. ++.|+||..+ +. ...+++.+||+++.+|
T Consensus 86 L~~~F~~lL~-~s~p~~p~~~---i~--------------------------------------k~~p~p~l~~~~l~~L 123 (564)
T 2b1e_A 86 LRVYFISILN-SIKPFDPQIN---IT--------------------------------------KKMPFPYYEDQQLGAL 123 (564)
T ss_dssp HHHHHHHHHT-TSCCCCHHHH---HH--------------------------------------HTCCCCCCCHHHHHHH
T ss_pred HHHHHHHHHH-hCCCCCHHHh---hc--------------------------------------cCCCCCCCCHHHHHHH
Confidence 9999999999 5899998764 11 1244778999999999
Q ss_pred HHHHHHHHHCCCchHHHHHHHHhhHHHHHHHHHhhCCCCCChHHhhhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041189 205 KQIADRMIRSGYEKECFQVYSNIRRGALDECLAILGVEKLSMEEVQKVEWSSLDEKMKKWIQAVKIAGKLLLSGEKKLCD 284 (635)
Q Consensus 205 ~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l~~sL~~L~~e~~s~~~v~k~~w~~le~~i~~wi~a~~~~vk~L~~~Er~L~~ 284 (635)
+.||+||+.+||.++|+++|+++|+.+|++||+.|.....++...++++|+.++++|..|+.++ ..|+++|++||+
T Consensus 124 ~~Ia~~m~~~g~~~~~~~iY~~~R~~~l~~sL~~L~~~~k~~~~~~~~~~e~~~~~i~~~~~a~----~~l~~~E~~L~~ 199 (564)
T 2b1e_A 124 SWILDYFHGNSEGSIIQDILVGERSKLILKCMAFLEPFAKEISTAKNAPYEKGSSGMNSYTEAL----LGFIANEKSLVD 199 (564)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTTSTTCC------------CCSTHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCchhhhccHHHHHHHHH----HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999966544566678899999999999999998 457999999999
Q ss_pred hhcCCCcccchhhHHHhhhhhhHH---HHHHHHHHHhccCCh-hHHHHHHHHHHHHHhhhHhHHHhhhch--hHHHHHHH
Q 041189 285 HIFSEAETLGDDCFNETAKGCVKP---LLIFAEAVAIGKRSS-EKLFRILDMYDALADVLPNLEAMITSE--LVCSEVWG 358 (635)
Q Consensus 285 ~vf~~~~~~~~~~F~~i~~~~~~~---Ll~f~~ava~~~rsp-eklf~lLdmye~L~~l~p~~~~lf~~~--~v~~~~~~ 358 (635)
+||+.+++.+..||.+|+++++.. ++.|..+ .++++| +++|.+|+||++|.++. .+|.|. ....++.+
T Consensus 200 ~vf~~~~~~~~~~f~~i~~~~l~~~~~~l~~~~~--~~k~~~~~~~f~~l~~~~~l~~~~----~~~~~~~~~~~~~~~~ 273 (564)
T 2b1e_A 200 DLYSQYTESKPHVLSQILSPLISAYAKLFGANLK--IVRSNLENFGFFSFELVESINDVK----KSLRGKELQNYNLLQD 273 (564)
T ss_dssp HHSCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH--CCC-----CCTHHHHHHHHHHHHH----HHTTTCCCTTHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH--HHhcChhhcchhHHHHHHHHHHHH----HHHcccccchHHHHHH
Confidence 999987668899999999999884 4555443 457888 89999999999997754 778765 44589999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCC-C-CCCCccccchHHHHHHHHHHHhhHHHHHHhhccCC-CCCCCcc------C
Q 041189 359 VLNALGEAAKGTFAEFENAVQSETSKK-P-MQGGEIHPLTRYVMNYVKLLVDYSDTLNKLLEHDE-IDTGSLQ------I 429 (635)
Q Consensus 359 ~l~~L~~~~~~~~~ef~~~I~~~~sk~-~-~~dG~VH~lT~~vmnyl~~L~~y~~~L~~lL~~~~-~~~~~~~------~ 429 (635)
++++|+++++++|.||++.|+.++++. + |+||||||+|+||||||+.|++|+++|..+|.+.. ++|.+.. .
T Consensus 274 ~l~~L~~~~~~~~~ef~~~i~~~~~~~~~~p~dG~Vh~lT~~vmnyl~~l~~y~~~l~~~l~~~~~~~~~~~~~~~~~~~ 353 (564)
T 2b1e_A 274 CTQEVRQVTQSLFRDAIDRIIKKANSISTIPSNNGVTEATVDTMSRLRKFSEYKNGCLGAMDNITRENWLPSNYKEKEYT 353 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCTTCCCCHHHHHHHHHHHHHGGGHHHHHHHTTTCCGGGTSCTTCCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcccHHHHHHHHHHHHHHhhHHHHHHHHHhccccCCCcccccccccc
Confidence 999999999999999999999987653 3 58999999999999999999999999999997642 2221100 0
Q ss_pred ----CcCCcCCCChHHHHHHHHHHHHHHHHHHh------------------hhhcCCccchhhHhhccHHHHHHhhccch
Q 041189 430 ----DADSLESMSPIARRLLLLITCLESNIEEK------------------SRLYDDSAMQYIFLMNNILYIVQKVKDSE 487 (635)
Q Consensus 430 ----~~~~~~~~~~l~~~i~~ii~~L~~nLe~K------------------Sk~ykd~aL~~iFLmNN~~yI~~~v~~s~ 487 (635)
...++++.++|+.++.++|++|+.|||+| |+.|+|++++ +|||||+|||+++|++|+
T Consensus 354 ~~~~~~~~~~~~~~l~~~i~~~i~~L~~~Le~ka~~~~~~~~~~~l~~~~ss~~~~d~~l~-~FllNN~~yI~~~v~~Se 432 (564)
T 2b1e_A 354 LQNEALNWEDHNVLLSCFISDCIDTLAVNLERKAQIALMPNQEPDVANPNSSKNKHKQRIG-FFILMNLTLVEQIVEKSE 432 (564)
T ss_dssp CCC----CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCSCTTCSSCTTHHHHH-HHHHHHHHHHHHHHHTST
T ss_pred cccccccCCCccchHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhcCHHHHH-HHHHHhHHHHHHHHhhhh
Confidence 00112245689999999999999999999 5679999995 599999999999999999
Q ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccCCCC--CCCccchHHHHHHHHHHHHHHHHHHHhccccccCC
Q 041189 488 LGKLLGDNWVRKRRGQVRQYATSYLRASWSKALACLKDEGIGG--GSTNASKVTLKERFRSFNLCFEEIYRVQTAWKVPD 565 (635)
Q Consensus 488 L~~lLG~~w~~~~~~~i~~~~~~Y~~~sW~~vl~~L~~~~~~~--~~~~~~r~~lKerfk~FN~~FeE~~~~Q~~w~VpD 565 (635)
|..+||++|+++|+.++++| +.|++++|++|++||.+++... |.++++|+.+||||++||++|||+|++|++|+|||
T Consensus 433 L~~lLg~~~~~~~~~~~~~~-~~y~~~sW~~v~~~L~~~~~~~~~~ks~~~k~~iKe~fk~FN~~Fee~~~~q~~w~vpD 511 (564)
T 2b1e_A 433 LNLMLAGEGHSRLERLKKRY-ISYMVSDWRDLTANLMDSVFIDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSD 511 (564)
T ss_dssp HHHHTTTHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred hHhHhcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccccCCCCCCccccHHHHHHHHHHHHHHHHHHHHhcCcccCcC
Confidence 99999999999999999999 5999999999999999876332 11468899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcccccCHHHHHHHHHhhh
Q 041189 566 PQLREELRISISEKVIPAYRSFMGRFRSQLESGRHAGKYIKYTPEDLESYLLDLF 620 (635)
Q Consensus 566 ~~LRe~Lr~~i~~~v~PaY~~F~~r~~~~~~~~k~~~KyiKYtpe~le~~L~~LF 620 (635)
|+||++||.+|+++|+|+|++||+||+. |+|||+|||||||+|||++|++|+
T Consensus 512 ~~LR~~Lr~~i~~~v~P~Y~~F~~ry~~---~~k~~~KyiKytpe~le~~l~~L~ 563 (564)
T 2b1e_A 512 PSLKVTLKSEIISLVMPMYERFYSRYKD---SFKNPRKHIKYTPDELTTVLNQLV 563 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGG---GSSSGGGTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccCCCCCcccCCHHHHHHHHHHhc
Confidence 9999999999999999999999999997 789999999999999999999997
No 3
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=60.91 E-value=1.1e+02 Score=29.59 Aligned_cols=95 Identities=14% Similarity=0.230 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHhhHHHHHHHHHhhCCCCCChHHhhhhchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041189 201 VDDLKQIADRMIRSGYEKECFQVYSNIRRGALDECLAILGVEKLSMEEVQKVEWSSLDEKMKKWIQAVKIAGKLLLSGEK 280 (635)
Q Consensus 201 v~~L~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l~~sL~~L~~e~~s~~~v~k~~w~~le~~i~~wi~a~~~~vk~L~~~Er 280 (635)
...++....+|++-|.....+..|=+.|+..+...+..++.+. ....|+..+..+ .|..=+
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~g----------------d~~~Yi~~Ls~i---~Fs~I~ 151 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIGSVD----------------NPTNYLTQLAVI---RFQTIK 151 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC--CC----------------SHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHhcccC----------------CHHHHHHHHHHH---HHHHHH
Confidence 5788999999999999999999999999999999998875431 123455544333 233222
Q ss_pred HH---HhhhcCCCcccchhhHHHhhhhhhHHHHHHHHHHH
Q 041189 281 KL---CDHIFSEAETLGDDCFNETAKGCVKPLLIFAEAVA 317 (635)
Q Consensus 281 ~L---~~~vf~~~~~~~~~~F~~i~~~~~~~Ll~f~~ava 317 (635)
+- ...+|+..+ ..|+..++.=+...+-.|+..+.
T Consensus 152 ~t~~~f~~~F~~~~---~~~~S~lV~Wa~~eve~f~~l~~ 188 (235)
T 2d2s_A 152 KTVEDFQDIFKELG---AKISSILVDWCSDEVDNHFKLID 188 (235)
T ss_dssp HHHHHHHHHSTTCC---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC---cccccHHHHHHHHHHHHHHHHHH
Confidence 22 234787632 24666666656666667777665
No 4
>2x5h_A ORF 131; viral protein; 1.80A {Sulfolobus islandicus rudivirus 1} PDB: 2x5g_A* 2x5t_A
Probab=51.53 E-value=4.9 Score=32.45 Aligned_cols=21 Identities=29% Similarity=0.748 Sum_probs=13.1
Q ss_pred HHHHHHHHhhhhhccCCCCCcccccCH
Q 041189 583 AYRSFMGRFRSQLESGRHAGKYIKYTP 609 (635)
Q Consensus 583 aY~~F~~r~~~~~~~~k~~~KyiKYtp 609 (635)
+-..|+++|.+.+ .|||||||
T Consensus 76 lIa~FLeKYS~~L------nkYVkF~~ 96 (97)
T 2x5h_A 76 LIAEFLEKYSDFL------NEYVKFTP 96 (97)
T ss_dssp HHHHHHHHTHHHH------HHHC----
T ss_pred HHHHHHHHHHHHH------HHhhcccc
Confidence 4457999998865 58999987
No 5
>2wvq_A Small S protein; prion-binding protein, prion, prion regulatory domain, heter incompatibility, prion- binding protein; 2.00A {Podospora anserina} PDB: 2wvn_A 2wvo_A
Probab=37.90 E-value=1e+02 Score=29.75 Aligned_cols=121 Identities=16% Similarity=0.230 Sum_probs=66.3
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccCCCCC-CCccchHHHHHHHHHHHHHHHHHHHhcccccc--CChHH
Q 041189 492 LGDNWVRKRRGQVRQYATSYLRASWSKALACLKDEGIGGG-STNASKVTLKERFRSFNLCFEEIYRVQTAWKV--PDPQL 568 (635)
Q Consensus 492 LG~~w~~~~~~~i~~~~~~Y~~~sW~~vl~~L~~~~~~~~-~~~~~r~~lKerfk~FN~~FeE~~~~Q~~w~V--pD~~L 568 (635)
+|.++.. +.-+++=.....+ .|+..+....+...... ......+.+++-+..--..|++.-+.|..|.. |++++
T Consensus 38 f~~D~~~-l~lkLdve~~RL~--~WG~avGL~~~~~~~~~l~~~~~~~~v~~iL~~I~~lf~~~~~l~~Ry~~~~~~~~~ 114 (225)
T 2wvq_A 38 FGRDYER-CQLRLDIAKARLS--RWGEAVKINDDPRFHSDAPTDKSVQLAKSIVEEILLLFESAQKTSKRYELVADQQDL 114 (225)
T ss_dssp GGGGHHH-HHHHHHHHHHHHH--HHHHHTTTTTCGGGGCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGG
T ss_pred hhHHHHH-HHHHHHHHHHHHH--HHHHHhCCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccc
Confidence 4555543 3334433334444 69999988765433221 12233567788788888888888877777776 33322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh------ccCCCCCcccccCHHHHHHHHHhh
Q 041189 569 REELRISISEKVIPAYRSFMGRFRSQL------ESGRHAGKYIKYTPEDLESYLLDL 619 (635)
Q Consensus 569 Re~Lr~~i~~~v~PaY~~F~~r~~~~~------~~~k~~~KyiKYtpe~le~~L~~L 619 (635)
-. + . ..-+-|+++..+++.+... ......-+++-|+.+.++.+|.++
T Consensus 115 ~~-~--~-~~~l~~~~~~~~~~~r~~~~~rq~~~s~~~r~~Wai~Dk~~F~~LV~~i 167 (225)
T 2wvq_A 115 VV-F--E-DKDMKPIGRALHRRLNDLVSRRQKQTSLAKKTAWALYDGKSLEKIVDQV 167 (225)
T ss_dssp CB-C--C-GGGSCHHHHHHHHHHHHHHHHHSCCCCSCCCCCEEECSHHHHHHHHHHH
T ss_pred cc-c--C-hhhHHHHHHHHHHHHHHHHHhccccCCccceeeeeeechHHHHHHHHHH
Confidence 10 0 0 1223344444444332221 122334577889999999887765
No 6
>1zva_A E2 glycoprotein; membrane fusion, virus entry, coiled C conformational change, viral protein; 1.50A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_B
Probab=29.63 E-value=24 Score=27.90 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCC-hhhHHHHHHHHhhhhhhhhhccc
Q 041189 16 ATAQQIVKSLNTP-KEVREDMLLIFSSFDNRLSNIGE 51 (635)
Q Consensus 16 a~~~~i~~sL~~s-~~lt~~m~~iL~~fd~rls~l~~ 51 (635)
++..++...|.++ ..++-.+-.|.+++|+||+.|..
T Consensus 14 ~aL~~L~~qL~~NFgAISSsi~dIy~rLdGRlaaLna 50 (77)
T 1zva_A 14 QALNTLVKQLSSNFGAISSVLNDISGGRGGDISGINA 50 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcchHHHHHH
Confidence 4567777788777 66888889999999999988764
No 7
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=28.60 E-value=44 Score=30.64 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=37.1
Q ss_pred HHHHHHHhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcccccCHHHHHHHHHhh
Q 041189 550 CFEEIYRVQTAWKVPDPQLREELRISISEKVIPAYRSFMGRFRSQLESGRHAGKYIKYTPEDLESYLLDL 619 (635)
Q Consensus 550 ~FeE~~~~Q~~w~VpD~~LRe~Lr~~i~~~v~PaY~~F~~r~~~~~~~~k~~~KyiKYtpe~le~~L~~L 619 (635)
-.-++.-.|++|. .|.|+|.+|+++|.. ++...+-++++|+.+|..+
T Consensus 35 LVs~ILsqQT~~~----------------~v~~~~~~l~~~~pt-------~~~la~a~~~el~~~i~~l 81 (161)
T 4e9f_A 35 LIATIFLNRTSGK----------------MAIPVLWKFLEKYPS-------AEVARTADWRDVSELLKPL 81 (161)
T ss_dssp HHHHHHTTTSCHH----------------HHHHHHHHHHHHSCS-------HHHHTTSCHHHHHHHHGGG
T ss_pred HHHHHHHhhCcHH----------------HHHHHHHHHHHHCCC-------HHHHhccChHhHHhHhhhc
Confidence 3346777777765 588999999999864 5667888999999998865
No 8
>3nft_A Translocator protein BIPD; virulence, translocation, transport protein; 1.51A {Burkholderia pseudomallei} PDB: 2ixr_A 2j9t_A* 2izp_A
Probab=25.10 E-value=89 Score=31.23 Aligned_cols=44 Identities=7% Similarity=0.232 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhhhhhc------cCCCCCcccccCHHHHHHHHHhhhCCC
Q 041189 579 KVIPAYRSFMGRFRSQLE------SGRHAGKYIKYTPEDLESYLLDLFEGS 623 (635)
Q Consensus 579 ~v~PaY~~F~~r~~~~~~------~~k~~~KyiKYtpe~le~~L~~LF~g~ 623 (635)
.|+..|..||+-|...+. .. +-.|.||+.+..+.+-|+++.+.-
T Consensus 142 ~IVk~YTdyyQdfNe~LSKlSd~IsA-kDGN~IKFD~~sfk~~l~~l~~kY 191 (303)
T 3nft_A 142 TIVEGLTKYFQSVADVMSKLQDYISA-KDDKNMKIDGGKIKALIQQVIDHL 191 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGEEE-ETTTEEEECHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-cCCCeeeecHHHHHHHHHHHHHhc
Confidence 467777778777765331 12 456789999999999999887654
No 9
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=19.52 E-value=56 Score=19.94 Aligned_cols=17 Identities=24% Similarity=0.682 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhcc
Q 041189 543 RFRSFNLCFEEIYRVQT 559 (635)
Q Consensus 543 rfk~FN~~FeE~~~~Q~ 559 (635)
||++|-..|..++++-+
T Consensus 2 rfkrfrkkfkklfkkls 18 (27)
T 2ket_A 2 RFKRFRKKFKKLFKKLS 18 (27)
T ss_dssp CHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHhcC
Confidence 58889999988887643
No 10
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=18.43 E-value=87 Score=24.92 Aligned_cols=25 Identities=28% Similarity=0.612 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcccc
Q 041189 122 MSRLEDDFRHLLISNTIPLDADGLY 146 (635)
Q Consensus 122 m~~Le~EF~~lL~~~s~~~~p~~l~ 146 (635)
+.+|+++|+.+|....+|+++..-|
T Consensus 8 ~rrl~~~F~~mLk~~~p~I~~~s~W 32 (77)
T 2cqn_A 8 MKRKESAFKSMLKQAAPPIELDAVW 32 (77)
T ss_dssp HHHHHHHHHHHHHTCSSCCCTTCCH
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCH
Confidence 5789999999999998888876544
Done!