BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041190
         (261 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
           Domain
 pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
           Domain
 pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
           Domain
 pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
           Domain
 pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
           Domain
 pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
           Domain
          Length = 543

 Score = 28.5 bits (62), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 126 LVDEEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVK 184
           L+DEE  +G EK KE I+  L    L       ++ + G  G+GKT+LA+ +    G K
Sbjct: 78  LLDEEH-HGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK 135


>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
           Asymmetry Of Eukaryotic Cytosolic Chaperonins
 pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
           Asymmetry Of Eukaryotic Cytosolic Chaperonins
 pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
           Asymmetry Of Eukaryotic Cytosolic Chaperonins
 pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
           Asymmetry Of Eukaryotic Cytosolic Chaperonins
 pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
           TricCCT DERIVED By A Combination Of Chemical
           Crosslinking And Mass-Spectrometry, Xl- Ms
 pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
           TricCCT DERIVED By A Combination Of Chemical
           Crosslinking And Mass-Spectrometry, Xl- Ms
 pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
           TricCCT DERIVED By A Combination Of Chemical
           Crosslinking And Mass-Spectrometry, Xl- Ms
 pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
           TricCCT DERIVED By A Combination Of Chemical
           Crosslinking And Mass-Spectrometry, Xl- Ms
          Length = 568

 Score = 27.3 bits (59), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 14/144 (9%)

Query: 1   MSITGEAILTVTVEMLVEKL-ALEVIQLFARQEQIEADLKKWEELLVI-IKVVLDDAEEK 58
           M + GE +L V+ +++   L A+E+IQ +    +    LK+ +E++V  I    D  E  
Sbjct: 104 MILAGE-LLNVSEKLISMGLSAVEIIQGYNMARKF--TLKELDEMVVGEITDKNDKNELL 160

Query: 59  QITKPLTKKWLGKLQNLAYDAEDMLDEFATEAFRRKLLLLEQADRQPTATA-RLRYGRVQ 117
           ++ KP+       + +  Y +ED+L E  +EA    L + +QA   P      +R  ++ 
Sbjct: 161 KMIKPV-------ISSKKYGSEDILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIM 213

Query: 118 ERPLSTPSLVDEEEVYGREKDKEV 141
              LS  +++ +  V+ RE +  V
Sbjct: 214 GGSLSNSTVI-KGMVFNREPEGHV 236


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.135    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,076,664
Number of Sequences: 62578
Number of extensions: 270693
Number of successful extensions: 924
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 923
Number of HSP's gapped (non-prelim): 11
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)