Query 041190
Match_columns 261
No_of_seqs 140 out of 1890
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:39:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041190.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041190hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.3E-29 2.9E-34 242.5 22.6 237 16-261 8-285 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.8 1.6E-20 3.5E-25 160.7 11.1 120 135-260 1-124 (287)
3 PLN03210 Resistant to P. syrin 99.5 7.5E-14 1.6E-18 139.8 12.6 121 128-258 182-317 (1153)
4 TIGR02928 orc1/cdc6 family rep 99.1 3.3E-10 7.2E-15 100.3 11.2 121 125-247 10-141 (365)
5 PRK00411 cdc6 cell division co 99.1 3.4E-10 7.5E-15 101.3 11.4 120 126-247 26-150 (394)
6 TIGR03015 pepcterm_ATPase puta 99.0 1.7E-08 3.7E-13 85.6 13.7 97 157-256 43-144 (269)
7 PF13401 AAA_22: AAA domain; P 99.0 1.4E-09 2.9E-14 82.0 6.1 101 157-257 4-110 (131)
8 COG1474 CDC6 Cdc6-related prot 98.9 1.8E-08 4E-13 88.8 11.1 119 128-248 15-136 (366)
9 cd01128 rho_factor Transcripti 98.8 8.2E-09 1.8E-13 86.3 6.1 90 157-247 16-115 (249)
10 PRK09376 rho transcription ter 98.8 2E-08 4.3E-13 88.1 7.5 87 158-247 170-268 (416)
11 PF13191 AAA_16: AAA ATPase do 98.8 1.8E-08 4E-13 80.2 6.8 51 131-184 1-51 (185)
12 PTZ00202 tuzin; Provisional 98.7 2.7E-06 5.9E-11 75.7 17.9 108 122-241 254-367 (550)
13 cd00009 AAA The AAA+ (ATPases 98.6 3.2E-07 7E-12 69.5 9.7 95 134-247 2-96 (151)
14 PTZ00112 origin recognition co 98.6 2.4E-07 5.3E-12 88.1 10.5 121 127-248 752-882 (1164)
15 TIGR00767 rho transcription te 98.6 2.8E-07 6.1E-12 81.3 9.2 90 157-247 168-267 (415)
16 PF01637 Arch_ATPase: Archaeal 98.5 1.9E-07 4.1E-12 76.9 6.3 44 132-181 1-44 (234)
17 PRK13342 recombination factor 98.4 9.7E-07 2.1E-11 79.6 8.1 99 131-257 13-114 (413)
18 KOG2543 Origin recognition com 98.4 2.9E-06 6.2E-11 73.6 10.3 112 129-248 5-128 (438)
19 PF05729 NACHT: NACHT domain 98.4 8E-07 1.7E-11 69.2 6.4 86 158-248 1-94 (166)
20 COG2256 MGS1 ATPase related to 98.2 5.3E-06 1.1E-10 72.5 8.7 99 127-256 27-125 (436)
21 TIGR02903 spore_lon_C ATP-depe 98.2 4.9E-05 1.1E-09 71.8 15.9 124 130-259 154-316 (615)
22 PF05496 RuvB_N: Holliday junc 98.2 4.4E-06 9.6E-11 68.1 7.6 52 129-181 23-74 (233)
23 TIGR00635 ruvB Holliday juncti 98.2 3E-06 6.5E-11 73.3 6.3 51 130-181 4-54 (305)
24 PRK04195 replication factor C 98.2 1E-05 2.2E-10 74.5 9.6 98 130-248 14-111 (482)
25 PRK11331 5-methylcytosine-spec 98.2 7E-06 1.5E-10 73.6 8.2 108 130-249 175-286 (459)
26 KOG2227 Pre-initiation complex 98.2 1.5E-05 3.2E-10 70.9 10.0 119 127-247 147-268 (529)
27 PF13173 AAA_14: AAA domain 98.2 4.1E-06 8.9E-11 62.9 5.6 76 158-254 3-78 (128)
28 PRK00080 ruvB Holliday junctio 98.1 6E-06 1.3E-10 72.2 6.6 51 130-181 25-75 (328)
29 KOG2028 ATPase related to the 98.1 7.5E-06 1.6E-10 70.8 6.6 95 126-247 140-234 (554)
30 smart00382 AAA ATPases associa 98.1 2.6E-05 5.6E-10 58.3 8.2 88 158-248 3-91 (148)
31 PF05621 TniB: Bacterial TniB 98.0 6.5E-05 1.4E-09 63.9 10.6 108 137-247 44-157 (302)
32 PRK12402 replication factor C 98.0 3.9E-05 8.4E-10 67.1 9.6 45 130-180 15-59 (337)
33 PRK13341 recombination factor 98.0 2.5E-05 5.5E-10 74.7 8.8 45 130-180 28-75 (725)
34 PRK08118 topology modulation p 98.0 4.5E-06 9.7E-11 65.8 2.8 34 159-192 3-37 (167)
35 PLN03025 replication factor C 97.9 7.4E-05 1.6E-09 65.1 10.0 45 130-180 13-57 (319)
36 PF00004 AAA: ATPase family as 97.9 1.7E-05 3.7E-10 59.3 4.8 22 160-181 1-22 (132)
37 PRK04841 transcriptional regul 97.9 0.00014 3E-09 72.0 12.4 87 156-248 31-134 (903)
38 PRK00440 rfc replication facto 97.9 0.00014 3.1E-09 63.0 10.8 45 130-180 17-61 (319)
39 PRK06893 DNA replication initi 97.9 1.9E-05 4.2E-10 65.4 5.0 38 157-196 39-76 (229)
40 PRK14963 DNA polymerase III su 97.9 9.1E-06 2E-10 74.8 3.2 47 130-181 14-60 (504)
41 PRK14949 DNA polymerase III su 97.9 0.0001 2.2E-09 71.2 10.3 47 130-181 16-62 (944)
42 PRK14961 DNA polymerase III su 97.8 7E-05 1.5E-09 66.4 8.4 47 130-181 16-62 (363)
43 PRK06645 DNA polymerase III su 97.8 7.2E-05 1.6E-09 68.8 8.1 47 130-181 21-67 (507)
44 PRK05564 DNA polymerase III su 97.8 0.00017 3.6E-09 62.7 9.9 107 130-257 4-115 (313)
45 PRK14957 DNA polymerase III su 97.8 0.00017 3.8E-09 66.8 10.3 46 130-180 16-61 (546)
46 PRK07003 DNA polymerase III su 97.8 7.1E-05 1.5E-09 71.0 7.7 46 130-180 16-61 (830)
47 TIGR03420 DnaA_homol_Hda DnaA 97.8 4.9E-05 1.1E-09 62.6 6.0 54 136-197 23-76 (226)
48 PF05673 DUF815: Protein of un 97.8 7.6E-05 1.6E-09 61.7 6.8 110 124-259 21-131 (249)
49 PF04665 Pox_A32: Poxvirus A32 97.8 0.0001 2.2E-09 61.1 7.6 35 158-194 14-48 (241)
50 PRK14956 DNA polymerase III su 97.8 0.00012 2.6E-09 66.5 8.4 121 130-258 18-144 (484)
51 PRK09361 radB DNA repair and r 97.8 0.00017 3.7E-09 59.5 8.8 88 154-245 20-117 (225)
52 PRK07261 topology modulation p 97.8 9.8E-05 2.1E-09 58.4 7.0 35 159-193 2-37 (171)
53 PRK08116 hypothetical protein; 97.7 0.00011 2.4E-09 62.3 7.5 82 158-253 115-196 (268)
54 TIGR01242 26Sp45 26S proteasom 97.7 3.7E-05 8.1E-10 68.2 4.8 53 128-180 120-179 (364)
55 PRK14962 DNA polymerase III su 97.7 0.00019 4.2E-09 65.6 9.3 46 130-180 14-59 (472)
56 PRK03992 proteasome-activating 97.7 7E-05 1.5E-09 67.0 6.2 53 128-180 129-188 (389)
57 TIGR02237 recomb_radB DNA repa 97.7 0.00015 3.2E-09 59.1 7.7 89 154-246 9-108 (209)
58 PHA02544 44 clamp loader, smal 97.7 0.00029 6.3E-09 61.2 9.9 46 130-180 21-66 (316)
59 TIGR00763 lon ATP-dependent pr 97.7 0.0023 5.1E-08 62.3 16.9 51 130-180 320-370 (775)
60 PRK12608 transcription termina 97.7 0.00029 6.3E-09 62.0 9.5 104 138-247 119-232 (380)
61 PRK12377 putative replication 97.7 0.00017 3.7E-09 60.4 7.8 80 158-253 102-181 (248)
62 PF07728 AAA_5: AAA domain (dy 97.7 1.9E-05 4.2E-10 60.0 2.0 87 160-259 2-89 (139)
63 PRK08727 hypothetical protein; 97.7 0.00016 3.5E-09 60.1 7.5 38 158-197 42-79 (233)
64 cd01123 Rad51_DMC1_radA Rad51_ 97.7 0.00031 6.7E-09 58.2 9.2 92 154-246 16-126 (235)
65 PRK14960 DNA polymerase III su 97.7 0.00037 7.9E-09 65.5 10.2 46 130-180 15-60 (702)
66 TIGR03689 pup_AAA proteasome A 97.6 0.00012 2.5E-09 67.3 6.7 52 130-181 182-240 (512)
67 PRK12323 DNA polymerase III su 97.6 0.00042 9E-09 65.0 10.1 46 130-180 16-61 (700)
68 TIGR02639 ClpA ATP-dependent C 97.6 0.00024 5.1E-09 68.8 8.8 44 131-180 183-226 (731)
69 TIGR02881 spore_V_K stage V sp 97.6 0.00028 6.1E-09 59.7 8.2 50 131-180 7-65 (261)
70 PRK14969 DNA polymerase III su 97.6 0.00057 1.2E-08 63.5 10.7 46 130-180 16-61 (527)
71 PRK14958 DNA polymerase III su 97.6 0.00049 1.1E-08 63.6 10.2 46 130-180 16-61 (509)
72 PRK12727 flagellar biosynthesi 97.6 0.0037 7.9E-08 57.6 15.6 25 156-180 349-373 (559)
73 COG0466 Lon ATP-dependent Lon 97.6 0.00016 3.5E-09 67.6 6.8 107 130-248 323-430 (782)
74 PRK14951 DNA polymerase III su 97.6 0.00045 9.7E-09 65.0 9.9 46 130-180 16-61 (618)
75 PF13207 AAA_17: AAA domain; P 97.6 5.7E-05 1.2E-09 55.8 3.2 23 159-181 1-23 (121)
76 PRK08691 DNA polymerase III su 97.6 0.00026 5.7E-09 66.9 8.1 46 130-180 16-61 (709)
77 PRK14955 DNA polymerase III su 97.6 0.00055 1.2E-08 61.5 9.8 47 130-181 16-62 (397)
78 CHL00095 clpC Clp protease ATP 97.5 0.00027 5.9E-09 69.2 8.0 45 130-180 179-223 (821)
79 PF01695 IstB_IS21: IstB-like 97.5 0.00028 6E-09 56.2 6.6 80 157-253 47-126 (178)
80 PRK05896 DNA polymerase III su 97.5 0.00063 1.4E-08 63.6 9.8 46 130-180 16-61 (605)
81 smart00763 AAA_PrkA PrkA AAA d 97.5 8.8E-05 1.9E-09 64.9 3.9 53 129-181 50-102 (361)
82 cd01393 recA_like RecA is a b 97.5 0.0012 2.5E-08 54.4 10.5 91 154-247 16-126 (226)
83 TIGR00602 rad24 checkpoint pro 97.5 0.00016 3.6E-09 68.1 5.4 50 130-180 84-133 (637)
84 PRK07994 DNA polymerase III su 97.5 0.00078 1.7E-08 63.6 9.9 46 130-180 16-61 (647)
85 PTZ00454 26S protease regulato 97.5 0.00044 9.5E-09 62.0 7.8 51 130-180 145-202 (398)
86 PRK08939 primosomal protein Dn 97.5 0.0004 8.7E-09 60.0 7.3 101 134-253 135-235 (306)
87 KOG2004 Mitochondrial ATP-depe 97.5 0.0035 7.7E-08 58.9 13.6 108 130-248 411-518 (906)
88 TIGR02639 ClpA ATP-dependent C 97.4 0.00065 1.4E-08 65.7 9.0 118 130-259 454-577 (731)
89 PRK07952 DNA replication prote 97.4 0.00086 1.9E-08 56.0 8.5 83 157-254 99-181 (244)
90 PRK08084 DNA replication initi 97.4 0.00046 9.9E-09 57.4 6.8 24 157-180 45-68 (235)
91 PRK05541 adenylylsulfate kinas 97.4 0.00024 5.1E-09 56.3 4.8 26 155-180 5-30 (176)
92 COG1484 DnaC DNA replication p 97.4 0.0006 1.3E-08 57.4 7.5 82 156-253 104-185 (254)
93 TIGR02397 dnaX_nterm DNA polym 97.4 0.0018 3.8E-08 57.1 10.7 46 130-180 14-59 (355)
94 PRK14952 DNA polymerase III su 97.4 0.0018 3.9E-08 60.7 11.1 46 130-180 13-58 (584)
95 PRK04301 radA DNA repair and r 97.4 0.0012 2.5E-08 57.5 9.4 92 154-246 99-209 (317)
96 PF00308 Bac_DnaA: Bacterial d 97.4 0.0014 2.9E-08 54.0 9.2 50 129-181 8-58 (219)
97 PRK06696 uridine kinase; Valid 97.4 0.00023 4.9E-09 58.8 4.5 43 135-180 3-45 (223)
98 PRK07764 DNA polymerase III su 97.4 0.0012 2.5E-08 64.4 9.9 47 130-181 15-61 (824)
99 PRK10787 DNA-binding ATP-depen 97.4 0.0052 1.1E-07 59.8 14.3 51 130-180 322-372 (784)
100 PRK08181 transposase; Validate 97.4 0.00045 9.7E-09 58.6 6.3 23 158-180 107-129 (269)
101 KOG0991 Replication factor C, 97.4 0.00082 1.8E-08 55.0 7.4 108 130-257 27-135 (333)
102 PRK09111 DNA polymerase III su 97.4 0.0014 3E-08 61.8 10.0 46 130-180 24-69 (598)
103 CHL00095 clpC Clp protease ATP 97.4 0.00053 1.1E-08 67.2 7.5 123 130-259 509-635 (821)
104 cd01394 radB RadB. The archaea 97.4 0.0014 3E-08 53.7 9.0 90 154-247 16-115 (218)
105 PRK14964 DNA polymerase III su 97.3 0.0015 3.2E-08 59.9 9.8 45 130-179 13-57 (491)
106 KOG0733 Nuclear AAA ATPase (VC 97.3 0.0012 2.7E-08 60.8 9.1 101 129-248 189-295 (802)
107 KOG0989 Replication factor C, 97.3 0.00043 9.3E-09 58.7 5.7 113 130-258 36-152 (346)
108 PRK05642 DNA replication initi 97.3 0.00074 1.6E-08 56.2 7.2 24 157-180 45-68 (234)
109 PRK10865 protein disaggregatio 97.3 0.0008 1.7E-08 66.1 8.5 45 130-180 178-222 (857)
110 PRK14950 DNA polymerase III su 97.3 0.00052 1.1E-08 64.7 7.0 46 130-180 16-61 (585)
111 PRK08903 DnaA regulatory inact 97.3 0.00071 1.5E-08 55.9 7.0 25 156-180 41-65 (227)
112 TIGR00362 DnaA chromosomal rep 97.3 0.0024 5.2E-08 57.5 10.9 76 157-247 136-211 (405)
113 cd01133 F1-ATPase_beta F1 ATP 97.3 0.0014 3E-08 55.5 8.7 88 158-247 70-175 (274)
114 COG2255 RuvB Holliday junction 97.3 0.00018 4E-09 60.3 3.3 53 130-183 26-78 (332)
115 TIGR03346 chaperone_ClpB ATP-d 97.3 0.001 2.3E-08 65.4 9.1 123 130-259 565-691 (852)
116 TIGR03345 VI_ClpV1 type VI sec 97.3 0.00061 1.3E-08 66.8 7.4 121 130-259 566-692 (852)
117 CHL00181 cbbX CbbX; Provisiona 97.3 0.0011 2.4E-08 56.8 8.1 50 131-180 24-82 (287)
118 PRK14970 DNA polymerase III su 97.3 0.0019 4.2E-08 57.3 9.9 46 130-180 17-62 (367)
119 COG0468 RecA RecA/RadA recombi 97.3 0.0024 5.3E-08 54.2 9.8 93 153-248 56-154 (279)
120 PRK05703 flhF flagellar biosyn 97.3 0.011 2.4E-07 53.6 14.6 24 157-180 221-244 (424)
121 PRK10865 protein disaggregatio 97.3 0.00089 1.9E-08 65.8 8.2 121 130-259 568-694 (857)
122 PLN00020 ribulose bisphosphate 97.3 0.0012 2.6E-08 58.0 8.0 28 155-182 146-173 (413)
123 TIGR03345 VI_ClpV1 type VI sec 97.3 0.00028 6E-09 69.2 4.5 45 130-180 187-231 (852)
124 PRK14088 dnaA chromosomal repl 97.3 0.00077 1.7E-08 61.3 7.1 25 157-181 130-154 (440)
125 COG2909 MalT ATP-dependent tra 97.3 0.0054 1.2E-07 58.7 12.6 102 139-248 24-142 (894)
126 PRK10867 signal recognition pa 97.3 0.0027 5.9E-08 57.4 10.4 25 155-179 98-122 (433)
127 TIGR00959 ffh signal recogniti 97.3 0.0027 5.9E-08 57.3 10.3 25 156-180 98-122 (428)
128 TIGR03346 chaperone_ClpB ATP-d 97.2 0.001 2.2E-08 65.5 8.0 44 131-180 174-217 (852)
129 PF07724 AAA_2: AAA domain (Cd 97.2 0.00027 5.8E-09 55.9 3.2 88 156-259 2-103 (171)
130 COG0542 clpA ATP-binding subun 97.2 0.00099 2.1E-08 63.7 7.4 123 130-259 491-617 (786)
131 PF00448 SRP54: SRP54-type pro 97.2 0.0022 4.7E-08 51.9 8.5 24 157-180 1-24 (196)
132 PRK13531 regulatory ATPase Rav 97.2 0.00053 1.2E-08 62.3 5.4 44 130-181 20-63 (498)
133 PRK07940 DNA polymerase III su 97.2 0.0025 5.5E-08 57.0 9.7 51 130-180 5-59 (394)
134 TIGR03499 FlhF flagellar biosy 97.2 0.0018 3.9E-08 55.4 8.4 85 156-243 193-280 (282)
135 PRK14959 DNA polymerase III su 97.2 0.0031 6.6E-08 59.3 10.4 47 130-181 16-62 (624)
136 TIGR02236 recomb_radA DNA repa 97.2 0.0029 6.2E-08 54.9 9.7 93 154-247 92-204 (310)
137 COG1222 RPT1 ATP-dependent 26S 97.2 0.0021 4.6E-08 55.7 8.5 98 130-247 151-256 (406)
138 PRK11034 clpA ATP-dependent Cl 97.2 0.00033 7.2E-09 67.5 4.0 44 131-180 187-230 (758)
139 PRK00771 signal recognition pa 97.2 0.0039 8.4E-08 56.5 10.6 27 155-181 93-119 (437)
140 PRK14954 DNA polymerase III su 97.2 0.0032 7E-08 59.5 10.4 46 130-180 16-61 (620)
141 PRK00149 dnaA chromosomal repl 97.2 0.0033 7.1E-08 57.5 10.2 26 156-181 147-172 (450)
142 TIGR00678 holB DNA polymerase 97.2 0.0055 1.2E-07 49.0 10.3 24 157-180 14-37 (188)
143 KOG1969 DNA replication checkp 97.2 0.0019 4.1E-08 60.8 8.4 76 154-248 323-400 (877)
144 PRK06526 transposase; Provisio 97.1 0.00055 1.2E-08 57.6 4.4 23 158-180 99-121 (254)
145 PRK06921 hypothetical protein; 97.1 0.0034 7.4E-08 53.2 9.3 37 157-195 117-154 (266)
146 PRK14953 DNA polymerase III su 97.1 0.005 1.1E-07 56.7 10.9 46 130-180 16-61 (486)
147 TIGR02012 tigrfam_recA protein 97.1 0.0016 3.4E-08 56.5 7.2 98 140-247 41-145 (321)
148 PRK14965 DNA polymerase III su 97.1 0.0038 8.3E-08 58.7 10.3 46 130-180 16-61 (576)
149 PTZ00361 26 proteosome regulat 97.1 0.00074 1.6E-08 61.1 5.3 51 130-180 183-240 (438)
150 PRK12726 flagellar biosynthesi 97.1 0.051 1.1E-06 48.2 16.5 25 156-180 205-229 (407)
151 COG2607 Predicted ATPase (AAA+ 97.1 0.0016 3.6E-08 53.5 6.7 108 126-259 56-164 (287)
152 PRK07667 uridine kinase; Provi 97.1 0.00077 1.7E-08 54.3 4.9 38 139-180 3-40 (193)
153 TIGR01241 FtsH_fam ATP-depende 97.1 0.00092 2E-08 61.8 6.0 52 129-180 54-111 (495)
154 PF13238 AAA_18: AAA domain; P 97.1 0.0004 8.6E-09 51.5 2.9 21 160-180 1-21 (129)
155 TIGR02640 gas_vesic_GvpN gas v 97.1 0.0033 7.2E-08 53.2 8.9 95 159-259 23-129 (262)
156 PF00485 PRK: Phosphoribulokin 97.1 0.00044 9.5E-09 55.8 3.2 23 159-181 1-23 (194)
157 PF08423 Rad51: Rad51; InterP 97.1 0.003 6.5E-08 53.3 8.4 102 140-246 25-144 (256)
158 PRK11034 clpA ATP-dependent Cl 97.1 0.0013 2.7E-08 63.6 6.7 117 131-259 459-581 (758)
159 PRK12422 chromosomal replicati 97.1 0.0056 1.2E-07 55.7 10.5 26 156-181 140-165 (445)
160 cd00983 recA RecA is a bacter 97.1 0.0013 2.9E-08 57.1 6.1 98 140-247 41-145 (325)
161 PRK05480 uridine/cytidine kina 97.1 0.00054 1.2E-08 55.9 3.6 25 156-180 5-29 (209)
162 CHL00176 ftsH cell division pr 97.1 0.001 2.2E-08 63.1 5.8 99 130-247 183-287 (638)
163 cd01120 RecA-like_NTPases RecA 97.1 0.0039 8.4E-08 47.9 8.3 40 159-200 1-40 (165)
164 PRK09354 recA recombinase A; P 97.1 0.0025 5.5E-08 55.8 7.7 99 139-247 45-150 (349)
165 PRK06647 DNA polymerase III su 97.0 0.0056 1.2E-07 57.4 10.5 46 130-180 16-61 (563)
166 TIGR01243 CDC48 AAA family ATP 97.0 0.0013 2.8E-08 63.7 6.6 53 128-180 176-235 (733)
167 TIGR02238 recomb_DMC1 meiotic 97.0 0.003 6.5E-08 54.8 8.1 103 140-247 83-203 (313)
168 PTZ00301 uridine kinase; Provi 97.0 0.00078 1.7E-08 55.0 4.2 24 157-180 3-26 (210)
169 KOG0735 AAA+-type ATPase [Post 97.0 0.002 4.4E-08 60.5 7.2 75 156-247 430-506 (952)
170 PRK09183 transposase/IS protei 97.0 0.0021 4.5E-08 54.3 6.8 23 158-180 103-125 (259)
171 TIGR02239 recomb_RAD51 DNA rep 97.0 0.0047 1E-07 53.7 9.1 103 140-247 83-203 (316)
172 TIGR03877 thermo_KaiC_1 KaiC d 97.0 0.0069 1.5E-07 50.4 9.6 98 140-246 8-137 (237)
173 TIGR00235 udk uridine kinase. 97.0 0.00073 1.6E-08 55.0 3.6 26 155-180 4-29 (207)
174 PRK08233 hypothetical protein; 97.0 0.00066 1.4E-08 53.8 3.3 25 157-181 3-27 (182)
175 KOG0736 Peroxisome assembly fa 97.0 0.0029 6.2E-08 59.9 7.7 101 130-249 672-778 (953)
176 cd03115 SRP The signal recogni 97.0 0.0033 7.1E-08 49.5 7.2 22 159-180 2-23 (173)
177 COG0572 Udk Uridine kinase [Nu 97.0 0.0021 4.5E-08 52.4 6.0 27 155-181 6-32 (218)
178 PF12775 AAA_7: P-loop contain 97.0 0.00076 1.6E-08 57.4 3.6 96 140-253 23-118 (272)
179 COG1618 Predicted nucleotide k 96.9 0.00083 1.8E-08 51.8 3.4 25 157-181 5-29 (179)
180 PRK15455 PrkA family serine pr 96.9 0.00058 1.3E-08 63.1 3.0 50 131-180 77-126 (644)
181 PF13671 AAA_33: AAA domain; P 96.9 0.00076 1.6E-08 51.2 3.2 22 159-180 1-22 (143)
182 cd02025 PanK Pantothenate kina 96.9 0.0047 1E-07 50.9 8.1 22 159-180 1-22 (220)
183 KOG0733 Nuclear AAA ATPase (VC 96.9 0.0015 3.3E-08 60.2 5.5 73 157-248 545-617 (802)
184 PLN03187 meiotic recombination 96.9 0.0044 9.5E-08 54.4 8.2 102 140-246 113-232 (344)
185 PRK14087 dnaA chromosomal repl 96.9 0.0024 5.2E-08 58.3 6.7 80 156-248 140-219 (450)
186 PRK14948 DNA polymerase III su 96.9 0.0081 1.8E-07 57.0 10.4 47 130-181 16-62 (620)
187 PRK06835 DNA replication prote 96.9 0.0033 7.2E-08 54.9 7.2 24 158-181 184-207 (329)
188 COG1102 Cmk Cytidylate kinase 96.9 0.0012 2.5E-08 51.1 3.8 42 159-213 2-43 (179)
189 PLN03186 DNA repair protein RA 96.9 0.012 2.7E-07 51.6 10.7 103 139-246 109-229 (342)
190 PRK06762 hypothetical protein; 96.9 0.00089 1.9E-08 52.4 3.1 23 158-180 3-25 (166)
191 PRK00625 shikimate kinase; Pro 96.9 0.0027 5.9E-08 50.2 5.8 22 159-180 2-23 (173)
192 PRK07133 DNA polymerase III su 96.9 0.0088 1.9E-07 57.2 10.2 46 130-180 18-63 (725)
193 COG0593 DnaA ATPase involved i 96.9 0.0035 7.5E-08 56.0 7.0 66 128-197 86-151 (408)
194 PF12061 DUF3542: Protein of u 96.9 0.0022 4.7E-08 54.5 5.4 82 11-92 296-378 (402)
195 PRK05563 DNA polymerase III su 96.8 0.0055 1.2E-07 57.5 8.5 46 130-180 16-61 (559)
196 PRK09112 DNA polymerase III su 96.8 0.0049 1.1E-07 54.4 7.7 48 128-180 21-68 (351)
197 PRK06305 DNA polymerase III su 96.8 0.01 2.2E-07 54.3 9.9 46 130-180 17-62 (451)
198 TIGR02880 cbbX_cfxQ probable R 96.8 0.0038 8.3E-08 53.5 6.8 22 159-180 60-81 (284)
199 TIGR00554 panK_bact pantothena 96.8 0.0082 1.8E-07 51.5 8.8 24 155-178 60-83 (290)
200 KOG0744 AAA+-type ATPase [Post 96.8 0.0043 9.3E-08 53.3 6.8 82 157-247 177-262 (423)
201 PRK14722 flhF flagellar biosyn 96.8 0.0054 1.2E-07 54.4 7.7 25 156-180 136-160 (374)
202 PRK08451 DNA polymerase III su 96.8 0.017 3.7E-07 53.6 11.3 46 130-180 14-59 (535)
203 PRK11889 flhF flagellar biosyn 96.8 0.01 2.2E-07 52.9 9.3 25 156-180 240-264 (436)
204 PRK06067 flagellar accessory p 96.8 0.0099 2.1E-07 49.3 8.9 98 139-245 11-130 (234)
205 PRK06547 hypothetical protein; 96.8 0.0014 3E-08 51.8 3.5 27 155-181 13-39 (172)
206 PF00006 ATP-synt_ab: ATP synt 96.8 0.0051 1.1E-07 50.4 6.9 83 158-246 16-116 (215)
207 cd02019 NK Nucleoside/nucleoti 96.8 0.0012 2.5E-08 43.9 2.6 22 159-180 1-22 (69)
208 PF00910 RNA_helicase: RNA hel 96.8 0.00091 2E-08 48.5 2.2 21 160-180 1-21 (107)
209 PRK14971 DNA polymerase III su 96.7 0.015 3.3E-07 55.1 10.8 46 130-180 17-62 (614)
210 cd01131 PilT Pilus retraction 96.7 0.0026 5.7E-08 51.4 5.0 23 158-180 2-24 (198)
211 TIGR01360 aden_kin_iso1 adenyl 96.7 0.0013 2.9E-08 52.3 3.1 25 156-180 2-26 (188)
212 PRK12724 flagellar biosynthesi 96.7 0.0056 1.2E-07 54.9 7.1 25 156-180 222-246 (432)
213 PRK14974 cell division protein 96.7 0.01 2.2E-07 52.0 8.6 25 156-180 139-163 (336)
214 PF00158 Sigma54_activat: Sigm 96.7 0.0066 1.4E-07 47.8 6.9 45 132-180 1-45 (168)
215 PRK04328 hypothetical protein; 96.7 0.01 2.3E-07 49.8 8.4 52 141-198 11-62 (249)
216 PRK05439 pantothenate kinase; 96.7 0.015 3.3E-07 50.3 9.5 27 154-180 83-109 (311)
217 PF01583 APS_kinase: Adenylyls 96.7 0.0017 3.8E-08 50.3 3.3 25 157-181 2-26 (156)
218 PRK04296 thymidine kinase; Pro 96.7 0.0021 4.5E-08 51.7 3.9 85 158-247 3-90 (190)
219 cd02023 UMPK Uridine monophosp 96.7 0.0012 2.6E-08 53.3 2.5 22 159-180 1-22 (198)
220 PRK09270 nucleoside triphospha 96.7 0.002 4.3E-08 53.4 3.8 27 154-180 30-56 (229)
221 PRK03839 putative kinase; Prov 96.6 0.0014 3.1E-08 52.0 2.8 23 159-181 2-24 (180)
222 PRK00131 aroK shikimate kinase 96.6 0.0016 3.5E-08 51.0 3.1 26 156-181 3-28 (175)
223 KOG1532 GTPase XAB1, interacts 96.6 0.013 2.9E-07 49.2 8.4 27 155-181 17-43 (366)
224 COG1419 FlhF Flagellar GTP-bin 96.6 0.009 2E-07 53.0 7.9 25 156-180 202-227 (407)
225 PRK04040 adenylate kinase; Pro 96.6 0.0018 3.9E-08 52.0 3.2 24 157-180 2-25 (188)
226 PRK08972 fliI flagellum-specif 96.6 0.0083 1.8E-07 54.1 7.7 87 157-247 162-264 (444)
227 PF00154 RecA: recA bacterial 96.6 0.0098 2.1E-07 51.6 7.9 100 139-248 38-144 (322)
228 PRK14086 dnaA chromosomal repl 96.6 0.017 3.8E-07 54.2 10.0 24 157-180 314-337 (617)
229 COG4608 AppF ABC-type oligopep 96.6 0.014 3.1E-07 48.9 8.4 90 157-247 39-139 (268)
230 COG0470 HolB ATPase involved i 96.6 0.017 3.7E-07 50.0 9.5 46 131-180 2-47 (325)
231 TIGR01243 CDC48 AAA family ATP 96.6 0.01 2.2E-07 57.7 8.7 51 130-180 453-510 (733)
232 PTZ00035 Rad51 protein; Provis 96.6 0.02 4.4E-07 50.2 9.9 103 139-246 104-224 (337)
233 COG0563 Adk Adenylate kinase a 96.6 0.0054 1.2E-07 48.8 5.6 23 159-181 2-24 (178)
234 PRK00279 adk adenylate kinase; 96.6 0.015 3.2E-07 47.7 8.4 22 159-180 2-23 (215)
235 PTZ00088 adenylate kinase 1; P 96.6 0.0034 7.3E-08 52.0 4.5 23 159-181 8-30 (229)
236 TIGR00064 ftsY signal recognit 96.5 0.019 4.1E-07 48.8 9.1 25 156-180 71-95 (272)
237 PRK06002 fliI flagellum-specif 96.5 0.016 3.5E-07 52.4 9.0 87 157-246 165-265 (450)
238 PRK07471 DNA polymerase III su 96.5 0.0046 9.9E-08 54.9 5.5 46 130-180 19-64 (365)
239 PRK12597 F0F1 ATP synthase sub 96.5 0.012 2.5E-07 53.6 8.2 88 158-246 144-248 (461)
240 TIGR01425 SRP54_euk signal rec 96.5 0.021 4.6E-07 51.5 9.7 26 155-180 98-123 (429)
241 PRK08927 fliI flagellum-specif 96.5 0.015 3.2E-07 52.6 8.5 87 157-247 158-260 (442)
242 PF08433 KTI12: Chromatin asso 96.5 0.0065 1.4E-07 51.6 6.0 23 158-180 2-24 (270)
243 TIGR02322 phosphon_PhnN phosph 96.5 0.0022 4.8E-08 50.8 3.0 23 158-180 2-24 (179)
244 cd02027 APSK Adenosine 5'-phos 96.5 0.0059 1.3E-07 47.0 5.2 22 159-180 1-22 (149)
245 COG0714 MoxR-like ATPases [Gen 96.5 0.0066 1.4E-07 53.1 6.1 112 131-259 25-136 (329)
246 TIGR00390 hslU ATP-dependent p 96.5 0.0088 1.9E-07 53.6 6.9 52 130-181 12-71 (441)
247 cd02024 NRK1 Nicotinamide ribo 96.5 0.0019 4.1E-08 51.7 2.5 23 159-181 1-23 (187)
248 PRK09280 F0F1 ATP synthase sub 96.5 0.014 3.1E-07 53.0 8.3 88 158-246 145-249 (463)
249 PRK12723 flagellar biosynthesi 96.5 0.013 2.8E-07 52.3 7.9 25 156-180 173-197 (388)
250 COG1373 Predicted ATPase (AAA+ 96.5 0.015 3.4E-07 52.2 8.5 73 159-254 39-111 (398)
251 KOG0735 AAA+-type ATPase [Post 96.5 0.061 1.3E-06 51.0 12.4 103 128-249 665-774 (952)
252 PRK10751 molybdopterin-guanine 96.5 0.0029 6.3E-08 49.9 3.4 26 156-181 5-30 (173)
253 PF03215 Rad17: Rad17 cell cyc 96.5 0.004 8.6E-08 57.7 4.8 55 136-195 25-79 (519)
254 KOG0729 26S proteasome regulat 96.5 0.011 2.3E-07 49.6 6.8 96 131-246 178-281 (435)
255 TIGR01359 UMP_CMP_kin_fam UMP- 96.4 0.002 4.3E-08 51.2 2.5 22 159-180 1-22 (183)
256 cd02028 UMPK_like Uridine mono 96.4 0.0021 4.6E-08 51.2 2.6 22 159-180 1-22 (179)
257 TIGR03263 guanyl_kin guanylate 96.4 0.0024 5.1E-08 50.6 2.9 23 158-180 2-24 (180)
258 COG0464 SpoVK ATPases of the A 96.4 0.0052 1.1E-07 56.8 5.5 74 155-247 274-347 (494)
259 cd01135 V_A-ATPase_B V/A-type 96.4 0.021 4.6E-07 48.3 8.6 90 158-247 70-178 (276)
260 PF00025 Arf: ADP-ribosylation 96.4 0.011 2.4E-07 46.7 6.6 100 156-256 13-137 (175)
261 PRK00889 adenylylsulfate kinas 96.4 0.0031 6.8E-08 49.8 3.4 26 156-181 3-28 (175)
262 PRK08149 ATP synthase SpaL; Va 96.4 0.02 4.3E-07 51.7 8.9 87 157-247 151-253 (428)
263 PRK11608 pspF phage shock prot 96.4 0.0066 1.4E-07 53.1 5.7 46 131-180 7-52 (326)
264 cd01121 Sms Sms (bacterial rad 96.4 0.009 1.9E-07 53.1 6.5 96 139-246 68-169 (372)
265 TIGR03881 KaiC_arch_4 KaiC dom 96.4 0.039 8.5E-07 45.5 10.0 41 155-197 18-58 (229)
266 COG0467 RAD55 RecA-superfamily 96.4 0.0079 1.7E-07 50.8 5.9 87 154-245 20-134 (260)
267 COG0541 Ffh Signal recognition 96.4 0.22 4.8E-06 44.7 14.9 72 139-213 79-155 (451)
268 cd00227 CPT Chloramphenicol (C 96.4 0.0027 5.9E-08 50.2 2.9 23 158-180 3-25 (175)
269 cd04159 Arl10_like Arl10-like 96.4 0.016 3.6E-07 43.9 7.2 21 160-180 2-22 (159)
270 cd02020 CMPK Cytidine monophos 96.4 0.0024 5.3E-08 48.5 2.5 22 159-180 1-22 (147)
271 cd02021 GntK Gluconate kinase 96.4 0.0025 5.5E-08 48.9 2.6 22 159-180 1-22 (150)
272 PF03205 MobB: Molybdopterin g 96.4 0.0035 7.5E-08 47.8 3.2 39 158-197 1-39 (140)
273 PRK14721 flhF flagellar biosyn 96.4 0.026 5.6E-07 50.9 9.2 24 156-179 190-213 (420)
274 PF14516 AAA_35: AAA-like doma 96.4 0.077 1.7E-06 46.5 12.1 112 128-248 9-140 (331)
275 TIGR03878 thermo_KaiC_2 KaiC d 96.3 0.033 7.2E-07 47.0 9.4 42 154-197 33-74 (259)
276 PRK05201 hslU ATP-dependent pr 96.3 0.011 2.4E-07 53.0 6.7 51 130-180 15-73 (443)
277 KOG0734 AAA+-type ATPase conta 96.3 0.012 2.6E-07 53.8 6.9 47 137-183 314-363 (752)
278 PRK00300 gmk guanylate kinase; 96.3 0.0033 7.2E-08 50.9 3.2 24 157-180 5-28 (205)
279 COG4088 Predicted nucleotide k 96.3 0.0018 3.9E-08 52.1 1.5 23 158-180 2-24 (261)
280 PRK14723 flhF flagellar biosyn 96.3 0.02 4.4E-07 55.1 8.7 24 157-180 185-208 (767)
281 PRK03846 adenylylsulfate kinas 96.3 0.004 8.6E-08 50.3 3.6 26 155-180 22-47 (198)
282 PRK06936 type III secretion sy 96.3 0.019 4.1E-07 51.9 8.0 84 157-246 162-263 (439)
283 PRK06995 flhF flagellar biosyn 96.3 0.022 4.8E-07 52.2 8.5 24 157-180 256-279 (484)
284 PF13177 DNA_pol3_delta2: DNA 96.3 0.054 1.2E-06 42.3 9.7 42 134-180 1-42 (162)
285 TIGR03305 alt_F1F0_F1_bet alte 96.3 0.015 3.3E-07 52.7 7.3 89 158-247 139-244 (449)
286 COG1936 Predicted nucleotide k 96.3 0.0031 6.8E-08 49.3 2.5 20 159-178 2-21 (180)
287 TIGR02655 circ_KaiC circadian 96.3 0.023 5E-07 52.4 8.6 101 137-246 247-364 (484)
288 PRK06620 hypothetical protein; 96.3 0.0035 7.5E-08 51.4 2.9 52 128-181 15-68 (214)
289 TIGR01351 adk adenylate kinase 96.2 0.027 5.9E-07 45.9 8.1 21 160-180 2-22 (210)
290 TIGR00150 HI0065_YjeE ATPase, 96.2 0.0068 1.5E-07 45.7 4.2 27 157-183 22-48 (133)
291 PHA00729 NTP-binding motif con 96.2 0.0045 9.7E-08 50.9 3.4 24 157-180 17-40 (226)
292 KOG2228 Origin recognition com 96.2 0.014 3E-07 50.5 6.4 113 130-247 24-149 (408)
293 PF08298 AAA_PrkA: PrkA AAA do 96.2 0.0063 1.4E-07 53.1 4.5 53 128-180 59-111 (358)
294 PTZ00494 tuzin-like protein; P 96.2 0.48 1E-05 43.1 16.1 80 123-213 364-443 (664)
295 PF03266 NTPase_1: NTPase; In 96.2 0.0036 7.8E-08 49.3 2.8 22 160-181 2-23 (168)
296 PRK08533 flagellar accessory p 96.2 0.025 5.5E-07 46.8 8.0 50 155-208 22-71 (230)
297 PF11868 DUF3388: Protein of u 96.2 0.017 3.7E-07 44.4 6.2 50 138-198 37-88 (192)
298 TIGR02902 spore_lonB ATP-depen 96.2 0.0073 1.6E-07 56.3 5.1 45 130-180 65-109 (531)
299 COG1428 Deoxynucleoside kinase 96.2 0.0046 9.9E-08 49.9 3.2 27 156-182 3-29 (216)
300 cd00071 GMPK Guanosine monopho 96.2 0.0036 7.9E-08 47.5 2.5 22 159-180 1-22 (137)
301 TIGR00382 clpX endopeptidase C 96.2 0.02 4.3E-07 51.5 7.5 51 129-180 76-139 (413)
302 PF08477 Miro: Miro-like prote 96.2 0.0047 1E-07 45.1 3.0 22 160-181 2-23 (119)
303 PRK07594 type III secretion sy 96.2 0.029 6.2E-07 50.7 8.5 86 157-246 155-256 (433)
304 PF07693 KAP_NTPase: KAP famil 96.2 0.023 5E-07 49.3 7.8 75 136-213 2-81 (325)
305 PRK06217 hypothetical protein; 96.2 0.0039 8.5E-08 49.7 2.7 25 159-183 3-27 (183)
306 PRK10078 ribose 1,5-bisphospho 96.2 0.0043 9.2E-08 49.6 2.9 23 158-180 3-25 (186)
307 PRK05688 fliI flagellum-specif 96.1 0.037 8E-07 50.3 9.1 87 157-247 168-270 (451)
308 PF03193 DUF258: Protein of un 96.1 0.0095 2.1E-07 46.4 4.7 37 136-181 23-59 (161)
309 KOG0730 AAA+-type ATPase [Post 96.1 0.015 3.3E-07 54.3 6.7 58 128-187 432-496 (693)
310 PF00625 Guanylate_kin: Guanyl 96.1 0.0079 1.7E-07 47.9 4.4 34 157-192 2-35 (183)
311 KOG0727 26S proteasome regulat 96.1 0.031 6.6E-07 46.6 7.8 51 130-180 155-212 (408)
312 PRK13949 shikimate kinase; Pro 96.1 0.0042 9E-08 49.0 2.7 23 159-181 3-25 (169)
313 COG3640 CooC CO dehydrogenase 96.1 0.0081 1.8E-07 49.3 4.3 22 159-180 2-23 (255)
314 COG1124 DppF ABC-type dipeptid 96.1 0.0044 9.5E-08 51.1 2.8 22 157-178 33-54 (252)
315 CHL00195 ycf46 Ycf46; Provisio 96.1 0.018 3.8E-07 53.1 7.1 52 130-181 228-283 (489)
316 TIGR03498 FliI_clade3 flagella 96.1 0.028 6E-07 50.7 8.1 87 157-247 140-242 (418)
317 PRK05922 type III secretion sy 96.1 0.04 8.7E-07 49.8 9.1 85 158-246 158-258 (434)
318 PTZ00185 ATPase alpha subunit; 96.1 0.028 6.1E-07 51.6 8.1 95 158-255 190-308 (574)
319 cd01134 V_A-ATPase_A V/A-type 96.1 0.049 1.1E-06 47.7 9.3 47 158-208 158-205 (369)
320 PF03308 ArgK: ArgK protein; 96.1 0.0082 1.8E-07 50.1 4.4 39 138-180 14-52 (266)
321 KOG0651 26S proteasome regulat 96.1 0.019 4.2E-07 49.1 6.6 27 156-182 165-191 (388)
322 cd00544 CobU Adenosylcobinamid 96.1 0.024 5.2E-07 44.6 6.9 79 160-244 2-82 (169)
323 PRK14527 adenylate kinase; Pro 96.1 0.0055 1.2E-07 49.2 3.3 26 156-181 5-30 (191)
324 PRK14738 gmk guanylate kinase; 96.1 0.0066 1.4E-07 49.4 3.7 26 155-180 11-36 (206)
325 PRK14530 adenylate kinase; Pro 96.1 0.0048 1E-07 50.5 2.9 22 159-180 5-26 (215)
326 PRK12339 2-phosphoglycerate ki 96.1 0.0056 1.2E-07 49.5 3.3 24 157-180 3-26 (197)
327 cd01136 ATPase_flagellum-secre 96.1 0.054 1.2E-06 47.2 9.4 84 158-247 70-171 (326)
328 TIGR01313 therm_gnt_kin carboh 96.1 0.004 8.7E-08 48.5 2.3 21 160-180 1-21 (163)
329 PRK15429 formate hydrogenlyase 96.1 0.025 5.3E-07 54.6 8.1 118 130-258 376-493 (686)
330 PRK10536 hypothetical protein; 96.1 0.015 3.4E-07 48.7 5.8 44 129-180 54-97 (262)
331 KOG1514 Origin recognition com 96.0 0.048 1E-06 51.4 9.4 117 129-247 395-520 (767)
332 PF06309 Torsin: Torsin; Inte 96.0 0.012 2.6E-07 43.7 4.6 51 130-180 25-76 (127)
333 TIGR01817 nifA Nif-specific re 96.0 0.017 3.6E-07 54.1 6.6 50 127-180 193-242 (534)
334 PRK10416 signal recognition pa 96.0 0.049 1.1E-06 47.4 9.1 25 156-180 113-137 (318)
335 cd00464 SK Shikimate kinase (S 96.0 0.0052 1.1E-07 47.2 2.8 22 160-181 2-23 (154)
336 cd01672 TMPK Thymidine monopho 96.0 0.014 3.1E-07 46.5 5.4 23 159-181 2-24 (200)
337 COG0194 Gmk Guanylate kinase [ 96.0 0.0093 2E-07 47.2 4.1 25 157-181 4-28 (191)
338 COG2842 Uncharacterized ATPase 96.0 0.04 8.7E-07 46.8 8.1 93 157-257 94-187 (297)
339 TIGR00073 hypB hydrogenase acc 96.0 0.0063 1.4E-07 49.5 3.3 27 154-180 19-45 (207)
340 TIGR02974 phageshock_pspF psp 96.0 0.015 3.2E-07 50.9 5.8 45 132-180 1-45 (329)
341 COG1116 TauB ABC-type nitrate/ 96.0 0.0054 1.2E-07 50.8 2.8 22 157-178 29-50 (248)
342 PRK14737 gmk guanylate kinase; 96.0 0.0083 1.8E-07 48.0 3.9 25 156-180 3-27 (186)
343 PF00005 ABC_tran: ABC transpo 96.0 0.0064 1.4E-07 45.7 3.1 23 158-180 12-34 (137)
344 COG1223 Predicted ATPase (AAA+ 96.0 0.0074 1.6E-07 50.4 3.6 57 127-183 118-177 (368)
345 COG1703 ArgK Putative periplas 96.0 0.0099 2.2E-07 50.5 4.4 64 140-207 38-101 (323)
346 PRK13947 shikimate kinase; Pro 96.0 0.0055 1.2E-07 48.1 2.7 23 159-181 3-25 (171)
347 KOG0726 26S proteasome regulat 96.0 0.041 9E-07 46.8 7.9 51 130-180 185-242 (440)
348 PF13481 AAA_25: AAA domain; P 96.0 0.05 1.1E-06 43.4 8.4 41 158-198 33-81 (193)
349 PRK09519 recA DNA recombinatio 96.0 0.052 1.1E-06 52.5 9.6 99 139-247 45-150 (790)
350 PRK13975 thymidylate kinase; P 96.0 0.0063 1.4E-07 48.8 3.1 24 158-181 3-26 (196)
351 PRK09087 hypothetical protein; 96.0 0.0065 1.4E-07 50.3 3.2 24 157-180 44-67 (226)
352 PLN02200 adenylate kinase fami 96.0 0.0073 1.6E-07 50.2 3.5 25 156-180 42-66 (234)
353 TIGR03496 FliI_clade1 flagella 96.0 0.038 8.1E-07 49.8 8.2 86 157-246 137-238 (411)
354 CHL00081 chlI Mg-protoporyphyr 95.9 0.0085 1.8E-07 52.7 3.9 49 126-180 13-61 (350)
355 PLN02348 phosphoribulokinase 95.9 0.011 2.3E-07 52.6 4.6 27 154-180 46-72 (395)
356 cd00820 PEPCK_HprK Phosphoenol 95.9 0.0072 1.6E-07 43.7 2.9 21 158-178 16-36 (107)
357 PRK08356 hypothetical protein; 95.9 0.0075 1.6E-07 48.6 3.4 20 158-177 6-25 (195)
358 TIGR01039 atpD ATP synthase, F 95.9 0.044 9.6E-07 49.8 8.5 89 158-247 144-249 (461)
359 PRK12678 transcription termina 95.9 0.028 6.1E-07 52.3 7.3 86 158-247 417-515 (672)
360 TIGR00416 sms DNA repair prote 95.9 0.034 7.3E-07 50.9 7.8 100 136-247 77-182 (454)
361 PRK05057 aroK shikimate kinase 95.9 0.0068 1.5E-07 47.9 3.0 23 158-180 5-27 (172)
362 cd01132 F1_ATPase_alpha F1 ATP 95.9 0.063 1.4E-06 45.5 8.8 92 158-256 70-181 (274)
363 KOG2170 ATPase of the AAA+ sup 95.9 0.036 7.8E-07 47.2 7.2 114 130-259 82-202 (344)
364 COG0529 CysC Adenylylsulfate k 95.9 0.0089 1.9E-07 47.0 3.4 26 155-180 21-46 (197)
365 PRK05800 cobU adenosylcobinami 95.9 0.045 9.9E-07 43.1 7.5 23 158-180 2-24 (170)
366 TIGR01420 pilT_fam pilus retra 95.8 0.019 4.1E-07 50.6 5.7 85 158-247 123-207 (343)
367 COG3899 Predicted ATPase [Gene 95.8 0.031 6.7E-07 55.0 7.7 46 132-180 2-47 (849)
368 TIGR00176 mobB molybdopterin-g 95.8 0.0067 1.4E-07 47.1 2.5 23 159-181 1-23 (155)
369 PRK11823 DNA repair protein Ra 95.8 0.02 4.3E-07 52.3 6.0 97 138-246 65-167 (446)
370 PRK09825 idnK D-gluconate kina 95.8 0.0077 1.7E-07 47.8 2.9 24 158-181 4-27 (176)
371 PRK13695 putative NTPase; Prov 95.8 0.0094 2E-07 47.0 3.4 23 159-181 2-24 (174)
372 TIGR01041 ATP_syn_B_arch ATP s 95.8 0.033 7.1E-07 50.8 7.2 89 158-246 142-249 (458)
373 PRK04182 cytidylate kinase; Pr 95.8 0.0079 1.7E-07 47.4 2.9 23 159-181 2-24 (180)
374 KOG0739 AAA+-type ATPase [Post 95.8 0.011 2.4E-07 50.3 3.8 51 130-181 133-190 (439)
375 cd01124 KaiC KaiC is a circadi 95.8 0.02 4.4E-07 45.4 5.2 36 160-197 2-37 (187)
376 TIGR00041 DTMP_kinase thymidyl 95.8 0.024 5.1E-07 45.4 5.7 24 158-181 4-27 (195)
377 PRK10733 hflB ATP-dependent me 95.8 0.018 4E-07 55.0 5.7 23 158-180 186-208 (644)
378 PRK05022 anaerobic nitric oxid 95.8 0.027 5.8E-07 52.4 6.7 49 128-180 185-233 (509)
379 KOG0728 26S proteasome regulat 95.8 0.052 1.1E-06 45.2 7.5 59 132-197 148-214 (404)
380 PRK09099 type III secretion sy 95.7 0.048 1E-06 49.5 8.0 86 157-246 163-264 (441)
381 COG1126 GlnQ ABC-type polar am 95.7 0.0086 1.9E-07 48.6 2.9 24 157-180 28-51 (240)
382 PLN02796 D-glycerate 3-kinase 95.7 0.0095 2.1E-07 52.1 3.4 25 156-180 99-123 (347)
383 TIGR00017 cmk cytidylate kinas 95.7 0.033 7.1E-07 45.8 6.4 23 158-180 3-25 (217)
384 cd01122 GP4d_helicase GP4d_hel 95.7 0.13 2.8E-06 43.5 10.2 50 157-209 30-79 (271)
385 COG1136 SalX ABC-type antimicr 95.7 0.0087 1.9E-07 49.2 2.8 22 158-179 32-53 (226)
386 PLN02318 phosphoribulokinase/u 95.7 0.014 3.1E-07 54.4 4.5 26 155-180 63-88 (656)
387 cd01428 ADK Adenylate kinase ( 95.7 0.0084 1.8E-07 47.9 2.7 21 160-180 2-22 (194)
388 PF13521 AAA_28: AAA domain; P 95.7 0.0074 1.6E-07 47.0 2.3 21 160-180 2-22 (163)
389 COG1763 MobB Molybdopterin-gua 95.7 0.0089 1.9E-07 46.6 2.7 25 157-181 2-26 (161)
390 PRK09435 membrane ATPase/prote 95.7 0.11 2.4E-06 45.4 9.7 26 155-180 54-79 (332)
391 COG1066 Sms Predicted ATP-depe 95.7 0.032 6.8E-07 49.6 6.3 100 135-247 75-180 (456)
392 cd04155 Arl3 Arl3 subfamily. 95.7 0.01 2.2E-07 46.4 3.0 24 157-180 14-37 (173)
393 TIGR02173 cyt_kin_arch cytidyl 95.7 0.0099 2.1E-07 46.4 3.0 22 159-180 2-23 (171)
394 PF07726 AAA_3: ATPase family 95.6 0.011 2.4E-07 44.1 3.0 26 160-187 2-27 (131)
395 PRK15453 phosphoribulokinase; 95.6 0.011 2.4E-07 50.2 3.4 25 156-180 4-28 (290)
396 KOG0731 AAA+-type ATPase conta 95.6 0.054 1.2E-06 51.9 8.2 97 131-247 312-415 (774)
397 PRK06761 hypothetical protein; 95.6 0.021 4.6E-07 48.6 5.1 24 158-181 4-27 (282)
398 PF01926 MMR_HSR1: 50S ribosom 95.6 0.011 2.5E-07 43.1 3.0 21 160-180 2-22 (116)
399 PRK10463 hydrogenase nickel in 95.6 0.022 4.7E-07 48.7 5.1 26 155-180 102-127 (290)
400 PRK08472 fliI flagellum-specif 95.6 0.064 1.4E-06 48.6 8.3 24 157-180 157-180 (434)
401 PRK14532 adenylate kinase; Pro 95.6 0.0091 2E-07 47.7 2.7 21 160-180 3-23 (188)
402 COG2019 AdkA Archaeal adenylat 95.6 0.011 2.3E-07 46.0 2.9 24 157-180 4-27 (189)
403 COG1120 FepC ABC-type cobalami 95.6 0.011 2.3E-07 49.7 3.1 24 156-179 27-50 (258)
404 PRK06820 type III secretion sy 95.6 0.08 1.7E-06 48.0 8.9 83 158-247 164-265 (440)
405 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.6 0.01 2.2E-07 48.6 2.9 24 157-180 30-53 (218)
406 PF13086 AAA_11: AAA domain; P 95.6 0.017 3.7E-07 47.2 4.3 52 159-210 19-75 (236)
407 PF02562 PhoH: PhoH-like prote 95.6 0.02 4.3E-07 46.5 4.5 116 133-256 3-140 (205)
408 PRK13948 shikimate kinase; Pro 95.6 0.013 2.8E-07 46.8 3.4 25 156-180 9-33 (182)
409 TIGR03574 selen_PSTK L-seryl-t 95.6 0.0088 1.9E-07 50.1 2.5 22 159-180 1-22 (249)
410 cd00984 DnaB_C DnaB helicase C 95.6 0.1 2.2E-06 43.2 9.0 41 156-197 12-52 (242)
411 COG0237 CoaE Dephospho-CoA kin 95.6 0.011 2.5E-07 47.8 3.0 23 157-179 2-24 (201)
412 PRK07721 fliI flagellum-specif 95.6 0.072 1.6E-06 48.4 8.5 25 156-180 157-181 (438)
413 TIGR01040 V-ATPase_V1_B V-type 95.6 0.077 1.7E-06 48.2 8.5 89 158-247 142-259 (466)
414 PHA02530 pseT polynucleotide k 95.6 0.011 2.4E-07 50.9 3.1 23 158-180 3-25 (300)
415 TIGR03497 FliI_clade2 flagella 95.5 0.073 1.6E-06 48.0 8.4 87 157-247 137-239 (413)
416 cd03116 MobB Molybdenum is an 95.5 0.012 2.7E-07 45.8 3.1 23 158-180 2-24 (159)
417 PRK06793 fliI flagellum-specif 95.5 0.073 1.6E-06 48.1 8.4 87 157-247 156-258 (432)
418 TIGR00764 lon_rel lon-related 95.5 0.037 8E-07 52.5 6.9 73 130-213 18-91 (608)
419 cd03225 ABC_cobalt_CbiO_domain 95.5 0.011 2.3E-07 48.1 2.9 24 157-180 27-50 (211)
420 PRK13946 shikimate kinase; Pro 95.5 0.01 2.3E-07 47.3 2.8 25 157-181 10-34 (184)
421 cd01130 VirB11-like_ATPase Typ 95.5 0.019 4.2E-07 45.8 4.3 23 158-180 26-48 (186)
422 PRK01184 hypothetical protein; 95.5 0.0097 2.1E-07 47.3 2.5 22 158-180 2-23 (184)
423 cd02029 PRK_like Phosphoribulo 95.5 0.061 1.3E-06 45.4 7.3 22 159-180 1-22 (277)
424 TIGR00960 3a0501s02 Type II (G 95.5 0.011 2.4E-07 48.3 2.9 24 157-180 29-52 (216)
425 PLN02165 adenylate isopentenyl 95.5 0.012 2.7E-07 51.1 3.2 25 156-180 42-66 (334)
426 PF10443 RNA12: RNA12 protein; 95.5 0.033 7.1E-07 49.9 5.8 67 135-213 1-71 (431)
427 PF13245 AAA_19: Part of AAA d 95.5 0.014 3.1E-07 39.5 2.8 23 158-180 11-34 (76)
428 cd03238 ABC_UvrA The excision 95.5 0.012 2.6E-07 46.7 2.8 23 157-179 21-43 (176)
429 TIGR01166 cbiO cobalt transpor 95.5 0.012 2.6E-07 47.1 2.9 23 158-180 19-41 (190)
430 PF03029 ATP_bind_1: Conserved 95.5 0.015 3.3E-07 48.5 3.6 20 162-181 1-20 (238)
431 cd03297 ABC_ModC_molybdenum_tr 95.4 0.013 2.9E-07 47.8 3.1 25 155-180 22-46 (214)
432 PF13604 AAA_30: AAA domain; P 95.4 0.024 5.3E-07 45.7 4.6 23 158-180 19-41 (196)
433 PRK03731 aroL shikimate kinase 95.4 0.012 2.7E-07 46.1 2.8 22 159-180 4-25 (171)
434 PF14532 Sigma54_activ_2: Sigm 95.4 0.0083 1.8E-07 45.5 1.8 45 133-181 1-45 (138)
435 cd02022 DPCK Dephospho-coenzym 95.4 0.011 2.4E-07 46.9 2.5 21 159-179 1-21 (179)
436 PRK14531 adenylate kinase; Pro 95.4 0.013 2.8E-07 46.7 2.9 22 159-180 4-25 (183)
437 cd03261 ABC_Org_Solvent_Resist 95.4 0.013 2.7E-07 48.7 2.9 23 158-180 27-49 (235)
438 cd03229 ABC_Class3 This class 95.4 0.013 2.9E-07 46.4 2.9 24 157-180 26-49 (178)
439 PRK07196 fliI flagellum-specif 95.4 0.061 1.3E-06 48.7 7.3 24 157-180 155-178 (434)
440 cd03293 ABC_NrtD_SsuB_transpor 95.4 0.013 2.9E-07 48.0 2.9 23 158-180 31-53 (220)
441 COG4240 Predicted kinase [Gene 95.4 0.071 1.5E-06 43.8 6.9 79 156-235 49-133 (300)
442 CHL00059 atpA ATP synthase CF1 95.4 0.11 2.4E-06 47.5 8.9 92 158-256 142-253 (485)
443 TIGR00455 apsK adenylylsulfate 95.4 0.018 3.9E-07 45.9 3.5 25 156-180 17-41 (184)
444 cd02026 PRK Phosphoribulokinas 95.3 0.012 2.5E-07 50.2 2.5 22 159-180 1-22 (273)
445 COG1100 GTPase SAR1 and relate 95.3 0.012 2.7E-07 47.8 2.6 24 158-181 6-29 (219)
446 cd04139 RalA_RalB RalA/RalB su 95.3 0.014 2.9E-07 44.9 2.7 22 159-180 2-23 (164)
447 PRK14493 putative bifunctional 95.3 0.014 3E-07 49.7 3.0 25 158-182 2-26 (274)
448 cd03269 ABC_putative_ATPase Th 95.3 0.014 3E-07 47.5 2.9 24 157-180 26-49 (210)
449 cd04163 Era Era subfamily. Er 95.3 0.016 3.5E-07 44.3 3.1 24 157-180 3-26 (168)
450 cd03263 ABC_subfamily_A The AB 95.3 0.014 3E-07 47.8 2.9 23 158-180 29-51 (220)
451 cd03222 ABC_RNaseL_inhibitor T 95.3 0.013 2.9E-07 46.5 2.7 24 157-180 25-48 (177)
452 TIGR02315 ABC_phnC phosphonate 95.3 0.014 3E-07 48.6 2.9 24 157-180 28-51 (243)
453 PRK05537 bifunctional sulfate 95.3 0.026 5.7E-07 53.0 5.0 46 132-181 371-416 (568)
454 cd03256 ABC_PhnC_transporter A 95.3 0.014 3E-07 48.5 2.9 24 157-180 27-50 (241)
455 TIGR02546 III_secr_ATP type II 95.3 0.16 3.4E-06 46.1 9.8 87 157-247 145-247 (422)
456 PF05970 PIF1: PIF1-like helic 95.3 0.047 1E-06 48.5 6.4 26 156-181 21-46 (364)
457 KOG1051 Chaperone HSP104 and r 95.3 0.1 2.2E-06 51.1 8.9 117 132-258 564-683 (898)
458 cd03226 ABC_cobalt_CbiO_domain 95.3 0.015 3.1E-07 47.2 2.9 24 157-180 26-49 (205)
459 cd03281 ABC_MSH5_euk MutS5 hom 95.3 0.012 2.6E-07 48.2 2.4 23 157-179 29-51 (213)
460 TIGR02673 FtsE cell division A 95.3 0.015 3.2E-07 47.5 2.9 23 158-180 29-51 (214)
461 cd03235 ABC_Metallic_Cations A 95.3 0.014 3E-07 47.6 2.8 24 157-180 25-48 (213)
462 PLN03046 D-glycerate 3-kinase; 95.3 0.019 4.1E-07 51.5 3.7 26 155-180 210-235 (460)
463 cd03260 ABC_PstB_phosphate_tra 95.3 0.015 3.3E-07 47.9 2.9 24 157-180 26-49 (227)
464 cd03292 ABC_FtsE_transporter F 95.3 0.015 3.3E-07 47.3 2.9 24 157-180 27-50 (214)
465 cd03264 ABC_drug_resistance_li 95.3 0.014 2.9E-07 47.6 2.6 22 159-180 27-48 (211)
466 KOG3347 Predicted nucleotide k 95.3 0.015 3.3E-07 44.4 2.6 24 157-180 7-30 (176)
467 PRK10584 putative ABC transpor 95.2 0.015 3.3E-07 47.9 2.9 24 157-180 36-59 (228)
468 cd03259 ABC_Carb_Solutes_like 95.2 0.015 3.4E-07 47.3 2.9 24 157-180 26-49 (213)
469 PF00406 ADK: Adenylate kinase 95.2 0.014 3E-07 44.9 2.5 19 162-180 1-19 (151)
470 PRK14528 adenylate kinase; Pro 95.2 0.016 3.5E-07 46.3 2.9 23 158-180 2-24 (186)
471 COG0542 clpA ATP-binding subun 95.2 0.017 3.8E-07 55.4 3.5 43 131-179 171-213 (786)
472 smart00072 GuKc Guanylate kina 95.2 0.022 4.7E-07 45.4 3.7 23 158-180 3-25 (184)
473 CHL00060 atpB ATP synthase CF1 95.2 0.072 1.6E-06 48.8 7.3 89 158-247 162-274 (494)
474 PRK00698 tmk thymidylate kinas 95.2 0.017 3.7E-07 46.5 3.1 23 158-180 4-26 (205)
475 PLN02674 adenylate kinase 95.2 0.07 1.5E-06 44.6 6.7 25 157-181 31-55 (244)
476 cd03296 ABC_CysA_sulfate_impor 95.2 0.016 3.4E-07 48.2 2.9 24 157-180 28-51 (239)
477 cd03265 ABC_DrrA DrrA is the A 95.2 0.016 3.5E-07 47.5 2.9 24 157-180 26-49 (220)
478 TIGR02211 LolD_lipo_ex lipopro 95.2 0.016 3.5E-07 47.5 2.9 24 157-180 31-54 (221)
479 PRK13541 cytochrome c biogenes 95.2 0.017 3.6E-07 46.5 2.9 23 158-180 27-49 (195)
480 PF12780 AAA_8: P-loop contain 95.2 0.19 4.1E-06 42.7 9.4 94 138-258 19-112 (268)
481 PRK15177 Vi polysaccharide exp 95.2 0.017 3.8E-07 47.2 3.0 24 157-180 13-36 (213)
482 PF05659 RPW8: Arabidopsis bro 95.2 0.49 1.1E-05 36.3 10.8 84 6-89 4-88 (147)
483 cd01862 Rab7 Rab7 subfamily. 95.2 0.016 3.5E-07 45.0 2.7 21 160-180 3-23 (172)
484 TIGR03864 PQQ_ABC_ATP ABC tran 95.2 0.016 3.6E-07 48.0 2.9 24 157-180 27-50 (236)
485 TIGR03608 L_ocin_972_ABC putat 95.2 0.017 3.7E-07 46.8 2.9 23 158-180 25-47 (206)
486 cd03224 ABC_TM1139_LivF_branch 95.2 0.017 3.7E-07 47.3 3.0 24 157-180 26-49 (222)
487 TIGR01618 phage_P_loop phage n 95.2 0.017 3.6E-07 47.5 2.8 22 157-178 12-33 (220)
488 PRK02496 adk adenylate kinase; 95.2 0.019 4.1E-07 45.7 3.1 22 159-180 3-24 (184)
489 PRK11629 lolD lipoprotein tran 95.2 0.017 3.6E-07 47.9 2.9 23 158-180 36-58 (233)
490 cd03258 ABC_MetN_methionine_tr 95.2 0.017 3.6E-07 47.8 2.9 24 157-180 31-54 (233)
491 smart00173 RAS Ras subfamily o 95.2 0.017 3.6E-07 44.6 2.8 22 159-180 2-23 (164)
492 PRK00023 cmk cytidylate kinase 95.2 0.069 1.5E-06 44.1 6.5 24 158-181 5-28 (225)
493 PRK08058 DNA polymerase III su 95.2 0.17 3.8E-06 44.2 9.4 45 131-180 6-51 (329)
494 PRK13538 cytochrome c biogenes 95.1 0.017 3.8E-07 46.8 2.9 24 157-180 27-50 (204)
495 cd01129 PulE-GspE PulE/GspE Th 95.1 0.076 1.6E-06 45.0 6.8 79 158-247 81-161 (264)
496 PF01078 Mg_chelatase: Magnesi 95.1 0.034 7.3E-07 45.1 4.4 42 130-179 3-44 (206)
497 PRK09302 circadian clock prote 95.1 0.14 3.1E-06 47.5 9.3 100 138-246 258-374 (509)
498 cd03257 ABC_NikE_OppD_transpor 95.1 0.017 3.7E-07 47.5 2.9 24 157-180 31-54 (228)
499 PRK11248 tauB taurine transpor 95.1 0.017 3.7E-07 48.6 2.9 24 157-180 27-50 (255)
500 cd01983 Fer4_NifH The Fer4_Nif 95.1 0.018 3.8E-07 40.0 2.5 23 159-181 1-23 (99)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.97 E-value=1.3e-29 Score=242.52 Aligned_cols=237 Identities=28% Similarity=0.363 Sum_probs=188.2
Q ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhccccChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHH
Q 041190 16 LVEKLALEVIQLFARQEQIEADLKKWEELLVIIKVVLDDAEEKQITKPLTKKWLGKLQNLAYDAEDMLDEFATEAFRRKL 95 (261)
Q Consensus 16 l~~~l~~~~~~~~~~~~~v~~~i~~L~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~lr~~ayd~ed~ld~~~~~~~~~~~ 95 (261)
.++++.+.+..++..+.++++.+..|++.|..++.++++++..+........|...++++.|++||+++.+.......+.
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~ 87 (889)
T KOG4658|consen 8 GVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKA 87 (889)
T ss_pred ehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777788899999999999999999999999999999888999999999999999999999999988865433
Q ss_pred Hhhcc------------cCCC----------hhHH------hhcccC----CCC-----CCCcCCCCCCCCCccccccch
Q 041190 96 LLLEQ------------ADRQ----------PTAT------ARLRYG----RVQ-----ERPLSTPSLVDEEEVYGREKD 138 (261)
Q Consensus 96 ~~~~~------------~~~~----------~~~~------~rl~~~----~~~-----~~~~~~~~~~~~~~~~gr~~~ 138 (261)
.+... ...+ +++. +.+... ... .....+.+..+... +|.+..
T Consensus 88 ~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~ 166 (889)
T KOG4658|consen 88 NDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETM 166 (889)
T ss_pred hHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHH
Confidence 22111 0000 1111 222211 111 11123333334444 999999
Q ss_pred HHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccc-cccccceeEEEeeCCCCCHHHHHHHHHHHhcC-C-
Q 041190 139 KEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAG-VKKYFSFRACAYVSEDFDAVGVTKVILQAAAG-S- 215 (261)
Q Consensus 139 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~-~- 215 (261)
++++.+.|..++ ..+++|+||||+||||||++++|+.. +.++|+.++||.||++++...++.+|+..++. .
T Consensus 167 ~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~ 240 (889)
T KOG4658|consen 167 LEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDE 240 (889)
T ss_pred HHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCc
Confidence 999999998753 28999999999999999999999987 89999999999999999999999999999983 2
Q ss_pred -CCCCCHHHHHHHHHHHhCCCeEEEEEeCCCCCChhhHHHhhcccCC
Q 041190 216 -ADVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVWTNLCKPFKA 261 (261)
Q Consensus 216 -~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~~~~~w~~l~~~l~~ 261 (261)
......++++..|.+.|++|||||||||||+.. +|+.|..|||.
T Consensus 241 ~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~--dw~~I~~~~p~ 285 (889)
T KOG4658|consen 241 EWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEV--DWDKIGVPFPS 285 (889)
T ss_pred ccchhhHHHHHHHHHHHhccCceEEEEecccccc--cHHhcCCCCCC
Confidence 223345789999999999999999999999984 89999999984
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.84 E-value=1.6e-20 Score=160.72 Aligned_cols=120 Identities=37% Similarity=0.515 Sum_probs=98.4
Q ss_pred ccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcC
Q 041190 135 REKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAG 214 (261)
Q Consensus 135 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~ 214 (261)
|+.++++|.+.|... .++.++|+|+||||+||||||+.+|++..++.+|+.++|+++++..+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~----~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDN----SNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTT----TTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCC----CCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 678899999999873 2578999999999999999999999987788999999999999999999999999999993
Q ss_pred C---C-CCCCHHHHHHHHHHHhCCCeEEEEEeCCCCCChhhHHHhhcccC
Q 041190 215 S---A-DVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVWTNLCKPFK 260 (261)
Q Consensus 215 ~---~-~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~~~~~w~~l~~~l~ 260 (261)
. . ...+...+...+++.|.++++||||||||+. ..|+.+...++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~ 124 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLP 124 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------H
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccc
Confidence 3 2 4567888999999999999999999999997 48988876664
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.52 E-value=7.5e-14 Score=139.76 Aligned_cols=121 Identities=24% Similarity=0.396 Sum_probs=86.2
Q ss_pred CCCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEe---eCCC------
Q 041190 128 DEEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAY---VSED------ 198 (261)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~---v~~~------ 198 (261)
....++|++.+++++..+|... ...+++++|+||||+||||||+.+|+. +..+|+..+|+. ++..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~~--l~~~F~g~vfv~~~~v~~~~~~~~~ 255 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFSR--LSRQFQSSVFIDRAFISKSMEIYSS 255 (1153)
T ss_pred ccccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHHH--HhhcCCeEEEeeccccccchhhccc
Confidence 4456999999999999988542 346899999999999999999999997 677898887764 1111
Q ss_pred -----CC-HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCeEEEEEeCCCCCChhhHHHhhcc
Q 041190 199 -----FD-AVGVTKVILQAAAGSADVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVWTNLCKP 258 (261)
Q Consensus 199 -----~~-~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~~~~~w~~l~~~ 258 (261)
++ ...+...++.++....+. .... ...+++.+.+||+||||||||+. +.|+.+...
T Consensus 256 ~~~~~~~~~~~l~~~~l~~il~~~~~-~~~~-~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~ 317 (1153)
T PLN03210 256 ANPDDYNMKLHLQRAFLSEILDKKDI-KIYH-LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQ 317 (1153)
T ss_pred ccccccchhHHHHHHHHHHHhCCCCc-ccCC-HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhh
Confidence 11 123445555555422111 1111 14578889999999999999986 588887654
No 4
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.15 E-value=3.3e-10 Score=100.33 Aligned_cols=121 Identities=15% Similarity=0.073 Sum_probs=86.2
Q ss_pred CCCCCCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccc-ccc---ceeEEEeeCCCCC
Q 041190 125 SLVDEEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVK-KYF---SFRACAYVSEDFD 200 (261)
Q Consensus 125 ~~~~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f---~~~~wv~v~~~~~ 200 (261)
+.+.+..++||+.+.+.|..+|.... .+.....+.|+|++|+|||++++.++++.... ... -..+|+++....+
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~--~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~ 87 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPIL--RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDT 87 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCC
Confidence 34455689999999999999987521 12344678999999999999999999863211 111 1346788887777
Q ss_pred HHHHHHHHHHHh---cC--CCCCCCHHHHHHHHHHHh--CCCeEEEEEeCCCCC
Q 041190 201 AVGVTKVILQAA---AG--SADVNDLNLLQLQLENQL--KNKKFLLVLDDMWSE 247 (261)
Q Consensus 201 ~~~i~~~i~~~l---~~--~~~~~~~~~~~~~l~~~l--~~kr~LiVlDdvw~~ 247 (261)
...++..|++++ +. +....+..++...+.+.+ .+++++||||+++..
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 88 LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 888999999988 31 112234555556666666 366899999999987
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.15 E-value=3.4e-10 Score=101.26 Aligned_cols=120 Identities=19% Similarity=0.112 Sum_probs=87.8
Q ss_pred CCCCCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHH
Q 041190 126 LVDEEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVT 205 (261)
Q Consensus 126 ~~~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~ 205 (261)
...+..++||+++.+.|...|...- .+.....+.|+|++|+|||++++.++++.......-..+++++....+...++
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~--~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~ 103 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPAL--RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIF 103 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHh--CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHH
Confidence 3456779999999999999985421 12334557899999999999999999874332212235677777777888899
Q ss_pred HHHHHHhcC-C--CCCCCHHHHHHHHHHHhC--CCeEEEEEeCCCCC
Q 041190 206 KVILQAAAG-S--ADVNDLNLLQLQLENQLK--NKKFLLVLDDMWSE 247 (261)
Q Consensus 206 ~~i~~~l~~-~--~~~~~~~~~~~~l~~~l~--~kr~LiVlDdvw~~ 247 (261)
..|+.++.. . ....+..++...+.+.+. ++..+||||+++..
T Consensus 104 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l 150 (394)
T PRK00411 104 SEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYL 150 (394)
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHh
Confidence 999999873 2 123356677777777775 45689999999875
No 6
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.96 E-value=1.7e-08 Score=85.57 Aligned_cols=97 Identities=25% Similarity=0.238 Sum_probs=65.8
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-----
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGSADVNDLNLLQLQLENQ----- 231 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~----- 231 (261)
.+++.|+|++|+|||||++.+++..... .+ ..+|+ +....+..+++..|+..++......+...+...+...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~ 119 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQF 119 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4588999999999999999999874321 11 12333 2334577788888988887332333333333333332
Q ss_pred hCCCeEEEEEeCCCCCChhhHHHhh
Q 041190 232 LKNKKFLLVLDDMWSENYDVWTNLC 256 (261)
Q Consensus 232 l~~kr~LiVlDdvw~~~~~~w~~l~ 256 (261)
..+++++||+||+|...+..|+.++
T Consensus 120 ~~~~~~vliiDe~~~l~~~~~~~l~ 144 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPELLEELR 144 (269)
T ss_pred hCCCCeEEEEECcccCCHHHHHHHH
Confidence 2688899999999999877777665
No 7
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.96 E-value=1.4e-09 Score=81.97 Aligned_cols=101 Identities=20% Similarity=0.162 Sum_probs=71.8
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccc---cccceeEEEeeCCCCCHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHh
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVK---KYFSFRACAYVSEDFDAVGVTKVILQAAA-GSADVNDLNLLQLQLENQL 232 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~wv~v~~~~~~~~i~~~i~~~l~-~~~~~~~~~~~~~~l~~~l 232 (261)
-+++.|+|.+|+|||++++.+.+..... ..-...+|++++...+...+...|+..++ ......+..++...+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4689999999999999999998863210 00123569999888899999999999999 3333467777778888888
Q ss_pred CCC-eEEEEEeCCCCC-ChhhHHHhhc
Q 041190 233 KNK-KFLLVLDDMWSE-NYDVWTNLCK 257 (261)
Q Consensus 233 ~~k-r~LiVlDdvw~~-~~~~w~~l~~ 257 (261)
... ..+||+||+... ..+.++.|+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~ 110 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRS 110 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHH
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHH
Confidence 654 459999999876 5555555543
No 8
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.8e-08 Score=88.80 Aligned_cols=119 Identities=20% Similarity=0.121 Sum_probs=90.8
Q ss_pred CCCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHH
Q 041190 128 DEEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKV 207 (261)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~ 207 (261)
-+..+.+|+.+.+++...|...- .+....-+.|+|.+|+|||+.++.|.+..+....=...++|++-...+...++..
T Consensus 15 iP~~l~~Re~ei~~l~~~l~~~~--~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 15 IPEELPHREEEINQLASFLAPAL--RGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred CcccccccHHHHHHHHHHHHHHh--cCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHH
Confidence 34448999999999999887643 2333344999999999999999999987432211111789999999999999999
Q ss_pred HHHHhc-CCCCCCCHHHHHHHHHHHhC--CCeEEEEEeCCCCCC
Q 041190 208 ILQAAA-GSADVNDLNLLQLQLENQLK--NKKFLLVLDDMWSEN 248 (261)
Q Consensus 208 i~~~l~-~~~~~~~~~~~~~~l~~~l~--~kr~LiVlDdvw~~~ 248 (261)
|++.++ .+....+..+....+.+.+. ++.++||||++....
T Consensus 93 i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~ 136 (366)
T COG1474 93 ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALV 136 (366)
T ss_pred HHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhc
Confidence 999997 44445566667777777774 689999999998764
No 9
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.81 E-value=8.2e-09 Score=86.30 Aligned_cols=90 Identities=13% Similarity=0.053 Sum_probs=63.4
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCC--CCHHHHHHHHHHHhc-CCCCCCCHH------HHHHH
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSED--FDAVGVTKVILQAAA-GSADVNDLN------LLQLQ 227 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~--~~~~~i~~~i~~~l~-~~~~~~~~~------~~~~~ 227 (261)
-..+.|+|++|+|||||++.+|++.... +|+..+|+.+++. ++..++++.+...+- ...+..... .....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999985444 8999999997776 788888888844333 222222211 12222
Q ss_pred HHHH-hCCCeEEEEEeCCCCC
Q 041190 228 LENQ-LKNKKFLLVLDDMWSE 247 (261)
Q Consensus 228 l~~~-l~~kr~LiVlDdvw~~ 247 (261)
...+ -.+++.++++|++-.-
T Consensus 95 a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHCCCCEEEEEECHHHh
Confidence 2222 2589999999999765
No 10
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.77 E-value=2e-08 Score=88.06 Aligned_cols=87 Identities=14% Similarity=0.076 Sum_probs=61.6
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCC--CHHHHHHHHHHHhc-CCCCCCCHHH---------HH
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDF--DAVGVTKVILQAAA-GSADVNDLNL---------LQ 225 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~--~~~~i~~~i~~~l~-~~~~~~~~~~---------~~ 225 (261)
.-..|+|++|+|||||++.||++.... +|++++||.+++.. .+.++++.+...+- ...+.....+ ..
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 357889999999999999999985444 89999999998887 67777777764332 2222222211 11
Q ss_pred HHHHHHhCCCeEEEEEeCCCCC
Q 041190 226 LQLENQLKNKKFLLVLDDMWSE 247 (261)
Q Consensus 226 ~~l~~~l~~kr~LiVlDdvw~~ 247 (261)
..++ ..++++||++|++-.-
T Consensus 249 e~~~--e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 249 KRLV--EHGKDVVILLDSITRL 268 (416)
T ss_pred HHHH--HcCCCEEEEEEChHHH
Confidence 2222 3689999999999654
No 11
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.77 E-value=1.8e-08 Score=80.22 Aligned_cols=51 Identities=25% Similarity=0.363 Sum_probs=34.3
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccc
Q 041190 131 EVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVK 184 (261)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 184 (261)
.|+||+++.+.+...|.. . .....+++.|+|++|+|||+|.+.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~-~--~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDA-A--QSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGG-T--SS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH-H--HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 379999999999999952 1 34456899999999999999999998874433
No 12
>PTZ00202 tuzin; Provisional
Probab=98.67 E-value=2.7e-06 Score=75.65 Aligned_cols=108 Identities=18% Similarity=0.169 Sum_probs=73.0
Q ss_pred CCCCCCCCCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCH
Q 041190 122 STPSLVDEEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDA 201 (261)
Q Consensus 122 ~~~~~~~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 201 (261)
....+.+...|+||+.+...|...|...+ .....++.|.|++|+|||||++.+..... + ...+++.. +.
T Consensus 254 ~~~lPa~~~~FVGReaEla~Lr~VL~~~d---~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~ 322 (550)
T PTZ00202 254 LQSAPAVIRQFVSREAEESWVRQVLRRLD---TAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GT 322 (550)
T ss_pred ccCCCCCccCCCCcHHHHHHHHHHHhccC---CCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CH
Confidence 34445667889999999999999996533 22346999999999999999999987633 1 12223333 67
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHh-----C-CCeEEEEE
Q 041190 202 VGVTKVILQAAAGSADVNDLNLLQLQLENQL-----K-NKKFLLVL 241 (261)
Q Consensus 202 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l-----~-~kr~LiVl 241 (261)
.++++.++.+|+... .....++...|.+.+ . +++.+||+
T Consensus 323 eElLr~LL~ALGV~p-~~~k~dLLrqIqeaLl~~~~e~GrtPVLII 367 (550)
T PTZ00202 323 EDTLRSVVKALGVPN-VEACGDLLDFISEACRRAKKMNGETPLLVL 367 (550)
T ss_pred HHHHHHHHHHcCCCC-cccHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 899999999999321 122233333333333 2 67777776
No 13
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.63 E-value=3.2e-07 Score=69.47 Aligned_cols=95 Identities=24% Similarity=0.167 Sum_probs=56.5
Q ss_pred cccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhc
Q 041190 134 GREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAA 213 (261)
Q Consensus 134 gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~ 213 (261)
|++.....+...+... ....+.|+|++|+|||++++.+++... ..-...+++..++..........+...
T Consensus 2 ~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~-- 71 (151)
T cd00009 2 GQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF-- 71 (151)
T ss_pred chHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh--
Confidence 5677778888877542 346788999999999999999998742 111234566655533322211111000
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCeEEEEEeCCCCC
Q 041190 214 GSADVNDLNLLQLQLENQLKNKKFLLVLDDMWSE 247 (261)
Q Consensus 214 ~~~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~ 247 (261)
............+..+|++||++..
T Consensus 72 ---------~~~~~~~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 72 ---------LVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred ---------hHhHHHHhhccCCCeEEEEeChhhh
Confidence 0011112223456789999999975
No 14
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.62 E-value=2.4e-07 Score=88.11 Aligned_cols=121 Identities=18% Similarity=0.092 Sum_probs=82.7
Q ss_pred CCCCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcccc---ccccc--eeEEEeeCCCCCH
Q 041190 127 VDEEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGV---KKYFS--FRACAYVSEDFDA 201 (261)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~f~--~~~wv~v~~~~~~ 201 (261)
+-+..+.||+++.++|...|...-. +.....++.|+|++|+|||++++.|.+.... +.... ..++|++..-.+.
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp 830 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHP 830 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCH
Confidence 4456789999999999998876321 1223468899999999999999999876321 11222 2467888776778
Q ss_pred HHHHHHHHHHhc--CCCCCCCHHHHHHHHHHHhC---CCeEEEEEeCCCCCC
Q 041190 202 VGVTKVILQAAA--GSADVNDLNLLQLQLENQLK---NKKFLLVLDDMWSEN 248 (261)
Q Consensus 202 ~~i~~~i~~~l~--~~~~~~~~~~~~~~l~~~l~---~kr~LiVlDdvw~~~ 248 (261)
..++..|..++. .+.......+....+...+. ....+||||||....
T Consensus 831 ~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~ 882 (1164)
T PTZ00112 831 NAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLI 882 (1164)
T ss_pred HHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhC
Confidence 888999998885 22223334445555555442 234699999998764
No 15
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.58 E-value=2.8e-07 Score=81.26 Aligned_cols=90 Identities=11% Similarity=0.047 Sum_probs=63.0
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCC--CCHHHHHHHHHHHhc-CCCCCCCHH------HHHHH
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSED--FDAVGVTKVILQAAA-GSADVNDLN------LLQLQ 227 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~--~~~~~i~~~i~~~l~-~~~~~~~~~------~~~~~ 227 (261)
-..+.|+|++|+|||||++.+++.... ++|+..+|+.+.+. .++.++++.++..+- ...+..... .+...
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 346899999999999999999998543 37999999998865 688888888865544 222221111 11122
Q ss_pred HHHH-hCCCeEEEEEeCCCCC
Q 041190 228 LENQ-LKNKKFLLVLDDMWSE 247 (261)
Q Consensus 228 l~~~-l~~kr~LiVlDdvw~~ 247 (261)
...+ -.+++.+|++|++-.-
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHH
Confidence 2222 3689999999999654
No 16
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.52 E-value=1.9e-07 Score=76.87 Aligned_cols=44 Identities=34% Similarity=0.437 Sum_probs=36.1
Q ss_pred cccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 132 VYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 132 ~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
|+||+++.+.|.+++... ....+.|+|+.|+|||+|++.+.+..
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 689999999999998653 34789999999999999999999874
No 17
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.40 E-value=9.7e-07 Score=79.59 Aligned_cols=99 Identities=21% Similarity=0.261 Sum_probs=58.2
Q ss_pred ccccccchHHH---HHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHH
Q 041190 131 EVYGREKDKEV---IVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKV 207 (261)
Q Consensus 131 ~~~gr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~ 207 (261)
+++|.+..+.. |..++... ....+.++|++|+||||||+.+.+.. ...| +.++.......-++.
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~~--~~~~-----~~l~a~~~~~~~ir~ 79 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGAT--DAPF-----EALSAVTSGVKDLRE 79 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHHh--CCCE-----EEEecccccHHHHHH
Confidence 47777666444 77776432 34567889999999999999998863 2222 222222111111222
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHhCCCeEEEEEeCCCCCChhhHHHhhc
Q 041190 208 ILQAAAGSADVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVWTNLCK 257 (261)
Q Consensus 208 i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~~~~~w~~l~~ 257 (261)
+++.+. .....+++.+|+||+++......++.|..
T Consensus 80 ii~~~~---------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~ 114 (413)
T PRK13342 80 VIEEAR---------------QRRSAGRRTILFIDEIHRFNKAQQDALLP 114 (413)
T ss_pred HHHHHH---------------HhhhcCCceEEEEechhhhCHHHHHHHHH
Confidence 222221 00114578899999999887555555543
No 18
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.39 E-value=2.9e-06 Score=73.57 Aligned_cols=112 Identities=21% Similarity=0.195 Sum_probs=81.9
Q ss_pred CCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHH
Q 041190 129 EEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVI 208 (261)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i 208 (261)
++.+.+|+.+...+..++...+ ..-++.+-|+|-.|+|||.+.+.+++.... ..+|+++-+.++...++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHH
Confidence 4678899999999999997753 234667799999999999999999997522 36899999999999999999
Q ss_pred HHHhc-CCCCCCC----HHHHHHHHHHHh-------CCCeEEEEEeCCCCCC
Q 041190 209 LQAAA-GSADVND----LNLLQLQLENQL-------KNKKFLLVLDDMWSEN 248 (261)
Q Consensus 209 ~~~l~-~~~~~~~----~~~~~~~l~~~l-------~~kr~LiVlDdvw~~~ 248 (261)
+.+.+ .+.++.. .+.+...+..+- +++.++||||++....
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr 128 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR 128 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh
Confidence 99985 2222211 121222222111 2578999999997653
No 19
>PF05729 NACHT: NACHT domain
Probab=98.39 E-value=8e-07 Score=69.23 Aligned_cols=86 Identities=22% Similarity=0.300 Sum_probs=50.8
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccc----cceeEEEeeCCCCCHH---HHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKY----FSFRACAYVSEDFDAV---GVTKVILQAAAGSADVNDLNLLQLQLEN 230 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~---~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 230 (261)
+++.|+|.+|+||||+++.++........ +...+|++........ .+...|..+.... ...... .+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~---~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES--IAPIEE---LLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc--hhhhHH---HHHH
Confidence 47899999999999999999887543332 3345566665533322 2333333332211 111111 1212
Q ss_pred H-hCCCeEEEEEeCCCCCC
Q 041190 231 Q-LKNKKFLLVLDDMWSEN 248 (261)
Q Consensus 231 ~-l~~kr~LiVlDdvw~~~ 248 (261)
. ...++++||||++....
T Consensus 76 ~~~~~~~~llilDglDE~~ 94 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELE 94 (166)
T ss_pred HHHcCCceEEEEechHhcc
Confidence 2 25789999999998765
No 20
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.25 E-value=5.3e-06 Score=72.46 Aligned_cols=99 Identities=25% Similarity=0.293 Sum_probs=59.5
Q ss_pred CCCCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHH
Q 041190 127 VDEEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTK 206 (261)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~ 206 (261)
+.+..++|....+.. ++. ..++.-.-.||++|+||||||+.+... ...+| ..+|...+-.+=++
T Consensus 27 vGQ~HLlg~~~~lrr---~v~------~~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f-----~~~sAv~~gvkdlr 90 (436)
T COG2256 27 VGQEHLLGEGKPLRR---AVE------AGHLHSMILWGPPGTGKTTLARLIAGT--TNAAF-----EALSAVTSGVKDLR 90 (436)
T ss_pred cChHhhhCCCchHHH---HHh------cCCCceeEEECCCCCCHHHHHHHHHHh--hCCce-----EEeccccccHHHHH
Confidence 445555665544444 332 235677788999999999999999886 44444 33343333222233
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHhCCCeEEEEEeCCCCCChhhHHHhh
Q 041190 207 VILQAAAGSADVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVWTNLC 256 (261)
Q Consensus 207 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~~~~~w~~l~ 256 (261)
.++++.. +....+++.+|++|+|-.-+....+.+.
T Consensus 91 ~i~e~a~---------------~~~~~gr~tiLflDEIHRfnK~QQD~lL 125 (436)
T COG2256 91 EIIEEAR---------------KNRLLGRRTILFLDEIHRFNKAQQDALL 125 (436)
T ss_pred HHHHHHH---------------HHHhcCCceEEEEehhhhcChhhhhhhh
Confidence 3333321 2233589999999999876644444443
No 21
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.24 E-value=4.9e-05 Score=71.84 Aligned_cols=124 Identities=23% Similarity=0.255 Sum_probs=76.4
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccc---eeEEEeeCCC---CCHHH
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFS---FRACAYVSED---FDAVG 203 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~---~~~wv~v~~~---~~~~~ 203 (261)
+.++|++..+..+...+.. +....+.|+|++|+||||||+.+++..+....+. ...|+.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 3588999888888877743 2345799999999999999999988743333331 2345554321 12222
Q ss_pred HHHHH---------------HHHhc-CCC----------------CCCC-HHHHHHHHHHHhCCCeEEEEEeCCCCCChh
Q 041190 204 VTKVI---------------LQAAA-GSA----------------DVND-LNLLQLQLENQLKNKKFLLVLDDMWSENYD 250 (261)
Q Consensus 204 i~~~i---------------~~~l~-~~~----------------~~~~-~~~~~~~l~~~l~~kr~LiVlDdvw~~~~~ 250 (261)
+...+ +...+ ... +... ....+..+...+++++++++.|+.|..++.
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 21111 11111 000 0111 123577889999999999999988887766
Q ss_pred hHHHhhccc
Q 041190 251 VWTNLCKPF 259 (261)
Q Consensus 251 ~w~~l~~~l 259 (261)
.|+.++..|
T Consensus 308 ~~~~ik~~~ 316 (615)
T TIGR02903 308 VPKYIKKLF 316 (615)
T ss_pred cchhhhhhc
Confidence 787765443
No 22
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.24 E-value=4.4e-06 Score=68.05 Aligned_cols=52 Identities=31% Similarity=0.400 Sum_probs=35.6
Q ss_pred CCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 129 EEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
-.+++|.+.-++++.-++..... .+..+.-+-.||++|+||||||+.+.+..
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHHC
T ss_pred HHHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhcc
Confidence 35789998888887665543111 23467788999999999999999999983
No 23
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.20 E-value=3e-06 Score=73.25 Aligned_cols=51 Identities=31% Similarity=0.448 Sum_probs=39.9
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.+++|++..++.|..++..... ....+..+.++|++|+|||+||+.+.+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999998864221 12345567899999999999999998873
No 24
>PRK04195 replication factor C large subunit; Provisional
Probab=98.18 E-value=1e-05 Score=74.46 Aligned_cols=98 Identities=27% Similarity=0.291 Sum_probs=61.8
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHH
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVIL 209 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~ 209 (261)
.+++|.+..++.|.+|+.... .+...+.+.|+|++|+||||+|+.+.+... |+ .+-++.+...+.. .+..++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~--~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~-~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWL--KGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTAD-VIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHH-HHHHHH
Confidence 468999999999999987532 122367899999999999999999998732 22 2334555433332 233333
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHhCCCeEEEEEeCCCCCC
Q 041190 210 QAAAGSADVNDLNLLQLQLENQLKNKKFLLVLDDMWSEN 248 (261)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~~ 248 (261)
....... ..+..++-+||||++....
T Consensus 86 ~~~~~~~-------------sl~~~~~kvIiIDEaD~L~ 111 (482)
T PRK04195 86 GEAATSG-------------SLFGARRKLILLDEVDGIH 111 (482)
T ss_pred HHhhccC-------------cccCCCCeEEEEecCcccc
Confidence 3222100 0011366788888887764
No 25
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.17 E-value=7e-06 Score=73.64 Aligned_cols=108 Identities=15% Similarity=0.105 Sum_probs=71.7
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHH
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVIL 209 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~ 209 (261)
.++++.+...+.+...|... +.+.++|++|+|||++|+.+++.......|+...||++++.++..+++..+
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~- 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY- 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc-
Confidence 45777888899999988753 467889999999999999999875444567778899999887765544311
Q ss_pred HHhcCCCCCCC--HHHHHHHHHHHhC--CCeEEEEEeCCCCCCh
Q 041190 210 QAAAGSADVND--LNLLQLQLENQLK--NKKFLLVLDDMWSENY 249 (261)
Q Consensus 210 ~~l~~~~~~~~--~~~~~~~l~~~l~--~kr~LiVlDdvw~~~~ 249 (261)
.+....-. ..-....+..... +++|++|+|++-..+.
T Consensus 246 ---rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani 286 (459)
T PRK11331 246 ---RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL 286 (459)
T ss_pred ---CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH
Confidence 11100000 0111222333322 4689999999987763
No 26
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.17 E-value=1.5e-05 Score=70.95 Aligned_cols=119 Identities=18% Similarity=0.138 Sum_probs=84.7
Q ss_pred CCCCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHH
Q 041190 127 VDEEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTK 206 (261)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~ 206 (261)
..+..+.||+.++..+.+|+..-- +.+..+-+.|.|.+|.|||.+...|+.+......--+++++++..-.....++.
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hl--e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHL--ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhh--hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 456779999999999999987632 345667899999999999999999998843221212457888777667888899
Q ss_pred HHHHHhcC-CCCCCCHHHHHHHHHHHhCCC--eEEEEEeCCCCC
Q 041190 207 VILQAAAG-SADVNDLNLLQLQLENQLKNK--KFLLVLDDMWSE 247 (261)
Q Consensus 207 ~i~~~l~~-~~~~~~~~~~~~~l~~~l~~k--r~LiVlDdvw~~ 247 (261)
.|...+.+ ...+....+....+.+..... -||+|||++...
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L 268 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHL 268 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHH
Confidence 99988841 112222244555565555433 599999998654
No 27
>PF13173 AAA_14: AAA domain
Probab=98.16 E-value=4.1e-06 Score=62.94 Aligned_cols=76 Identities=21% Similarity=0.179 Sum_probs=48.6
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCeE
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGSADVNDLNLLQLQLENQLKNKKF 237 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~ 237 (261)
+++.|.|+.|+|||||+++++++.. .....++++........... .+ +...+.+...+++.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~---------------~~-~~~~~~~~~~~~~~ 63 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD---------------PD-LLEYFLELIKPGKK 63 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh---------------hh-hHHHHHHhhccCCc
Confidence 6899999999999999999988733 22345667765532211000 00 22334444445788
Q ss_pred EEEEeCCCCCChhhHHH
Q 041190 238 LLVLDDMWSENYDVWTN 254 (261)
Q Consensus 238 LiVlDdvw~~~~~~w~~ 254 (261)
+|+||++.... .|..
T Consensus 64 ~i~iDEiq~~~--~~~~ 78 (128)
T PF13173_consen 64 YIFIDEIQYLP--DWED 78 (128)
T ss_pred EEEEehhhhhc--cHHH
Confidence 89999998874 4543
No 28
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.12 E-value=6e-06 Score=72.20 Aligned_cols=51 Identities=33% Similarity=0.475 Sum_probs=40.2
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.+++|++..++.+..++..... .+.....+.++|++|+||||||+.+.+..
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 4699999999999888764211 12345678899999999999999999874
No 29
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.10 E-value=7.5e-06 Score=70.76 Aligned_cols=95 Identities=21% Similarity=0.279 Sum_probs=59.2
Q ss_pred CCCCCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHH
Q 041190 126 LVDEEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVT 205 (261)
Q Consensus 126 ~~~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~ 205 (261)
.+.+..++|.+.- |.+++.. +.+.-+-+||++|+||||||+.+.+..+... ..+|..|....-..=.
T Consensus 140 yvGQ~hlv~q~gl---lrs~ieq------~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dv 206 (554)
T KOG2028|consen 140 YVGQSHLVGQDGL---LRSLIEQ------NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDV 206 (554)
T ss_pred hcchhhhcCcchH---HHHHHHc------CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHH
Confidence 3445556665433 3444433 3567788999999999999999998755443 3356666554433334
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHhCCCeEEEEEeCCCCC
Q 041190 206 KVILQAAAGSADVNDLNLLQLQLENQLKNKKFLLVLDDMWSE 247 (261)
Q Consensus 206 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~ 247 (261)
++|+++... -..+..+|-+|++|+|-.-
T Consensus 207 R~ife~aq~--------------~~~l~krkTilFiDEiHRF 234 (554)
T KOG2028|consen 207 RDIFEQAQN--------------EKSLTKRKTILFIDEIHRF 234 (554)
T ss_pred HHHHHHHHH--------------HHhhhcceeEEEeHHhhhh
Confidence 455554331 1124578899999998654
No 30
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.05 E-value=2.6e-05 Score=58.28 Aligned_cols=88 Identities=23% Similarity=0.110 Sum_probs=47.6
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhCCC-e
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGSADVNDLNLLQLQLENQLKNK-K 236 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k-r 236 (261)
..+.|+|++|+||||+++.+....... .....++..+........... ...................+....+.. .
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP--GGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC--CCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 578999999999999999998873322 112344444332221111111 011111112222222333444444444 4
Q ss_pred EEEEEeCCCCCC
Q 041190 237 FLLVLDDMWSEN 248 (261)
Q Consensus 237 ~LiVlDdvw~~~ 248 (261)
.+|++|++....
T Consensus 80 ~viiiDei~~~~ 91 (148)
T smart00382 80 DVLILDEITSLL 91 (148)
T ss_pred CEEEEECCcccC
Confidence 999999999875
No 31
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.02 E-value=6.5e-05 Score=63.93 Aligned_cols=108 Identities=15% Similarity=0.060 Sum_probs=74.6
Q ss_pred chHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcccccc----ccceeEEEeeCCCCCHHHHHHHHHHHh
Q 041190 137 KDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKK----YFSFRACAYVSEDFDAVGVTKVILQAA 212 (261)
Q Consensus 137 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~i~~~i~~~l 212 (261)
...+.|-++|... .......+.|+|.+|.|||++++.....--... .--.++.|.++..++...++..|++++
T Consensus 44 ~~L~~L~~Ll~~P---~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 44 EALDRLEELLEYP---KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHHHHHHHhCC---cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 3455566666543 355677899999999999999999885421111 111466788899999999999999999
Q ss_pred c-CCCCCCCHHHHHHHHHHHhC-CCeEEEEEeCCCCC
Q 041190 213 A-GSADVNDLNLLQLQLENQLK-NKKFLLVLDDMWSE 247 (261)
Q Consensus 213 ~-~~~~~~~~~~~~~~l~~~l~-~kr~LiVlDdvw~~ 247 (261)
+ +.........+.......++ -+--+||+|++-+.
T Consensus 121 gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~l 157 (302)
T PF05621_consen 121 GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNL 157 (302)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHH
Confidence 9 43344455555555545553 24557889999764
No 32
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.01 E-value=3.9e-05 Score=67.09 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=37.1
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|++..++.|..++... ..+.+.++|++|+||||+|+.+.+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999988543 3345789999999999999998876
No 33
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.00 E-value=2.5e-05 Score=74.71 Aligned_cols=45 Identities=29% Similarity=0.433 Sum_probs=33.6
Q ss_pred CccccccchHH---HHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKE---VIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+..+. .+..++... ++..+.++|++|+||||||+.+++.
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~------~~~slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD------RVGSLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 35788776653 455666432 4556789999999999999999986
No 34
>PRK08118 topology modulation protein; Reviewed
Probab=97.98 E-value=4.5e-06 Score=65.79 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=28.2
Q ss_pred EEeEeecCCCChHHHHHHHhhccccc-cccceeEE
Q 041190 159 VIPITGMGGLGKTTLAQLVFNDAGVK-KYFSFRAC 192 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~w 192 (261)
-|.|+|++|+||||||+.+++..... -+|+...|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999986654 45777764
No 35
>PLN03025 replication factor C subunit; Provisional
Probab=97.94 E-value=7.4e-05 Score=65.11 Aligned_cols=45 Identities=18% Similarity=0.278 Sum_probs=35.3
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+..++.|..++... +.+.+-++|++|+||||+|+.+.+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 35788888888888877542 3344678999999999999999876
No 36
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.91 E-value=1.7e-05 Score=59.26 Aligned_cols=22 Identities=41% Similarity=0.452 Sum_probs=20.1
Q ss_pred EeEeecCCCChHHHHHHHhhcc
Q 041190 160 IPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 160 i~I~G~~GiGKTtLa~~v~~~~ 181 (261)
|-++|++|+|||++|+.+.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5689999999999999999983
No 37
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.90 E-value=0.00014 Score=71.96 Aligned_cols=87 Identities=21% Similarity=0.203 Sum_probs=59.4
Q ss_pred CceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCC-CCHHHHHHHHHHHhc-CCCC----------C---CC
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSED-FDAVGVTKVILQAAA-GSAD----------V---ND 220 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~i~~~i~~~l~-~~~~----------~---~~ 220 (261)
..+++.|+|++|.||||++.+..+. +...+|+++... .+...++..++..+. .... . .+
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 104 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYAS 104 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCC
Confidence 5789999999999999999998754 225889999644 455667777777775 1110 0 12
Q ss_pred HHHHHHHHHHHhC--CCeEEEEEeCCCCCC
Q 041190 221 LNLLQLQLENQLK--NKKFLLVLDDMWSEN 248 (261)
Q Consensus 221 ~~~~~~~l~~~l~--~kr~LiVlDdvw~~~ 248 (261)
...+...+...+. +.+++|||||+-..+
T Consensus 105 ~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~ 134 (903)
T PRK04841 105 LSSLFAQLFIELADWHQPLYLVIDDYHLIT 134 (903)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCcCcCC
Confidence 2233333333332 678999999997765
No 38
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.88 E-value=0.00014 Score=62.97 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=37.5
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|++..++.+..++... ..+.+.++|++|+||||+++.+.+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999998543 2345799999999999999999876
No 39
>PRK06893 DNA replication initiation factor; Validated
Probab=97.88 E-value=1.9e-05 Score=65.42 Aligned_cols=38 Identities=21% Similarity=0.010 Sum_probs=27.6
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeC
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVS 196 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~ 196 (261)
.+.+.++|++|+|||+|++.+++.. ........|+++.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHY--LLNQRTAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEeeHH
Confidence 3578999999999999999999873 2222234566653
No 40
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=9.1e-06 Score=74.81 Aligned_cols=47 Identities=34% Similarity=0.383 Sum_probs=38.0
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.+++|.+..++.|..++.... -.+.+.++|++|+||||+|+.+.+..
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l 60 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAV 60 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 358999988999988886532 34567999999999999999998764
No 41
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.0001 Score=71.16 Aligned_cols=47 Identities=26% Similarity=0.335 Sum_probs=38.2
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.+++|.+..++.|.+++.... -.+.+-++|++|+||||+|+.+.+..
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999986532 23456799999999999999998763
No 42
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=7e-05 Score=66.43 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=38.4
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.+++|.+..++.+.+.+.... -.+.+.++|++|+||||+|+.+.+..
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHh
Confidence 468899999999999886532 34567899999999999999998763
No 43
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=7.2e-05 Score=68.80 Aligned_cols=47 Identities=30% Similarity=0.357 Sum_probs=37.6
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.+++|.+.-+..|...+... .-.+.+-++|++|+||||+|+.+.+..
T Consensus 21 ~dliGq~~vv~~L~~ai~~~-----ri~~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND-----RLAGGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35789998888888877543 234678899999999999999998763
No 44
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.81 E-value=0.00017 Score=62.69 Aligned_cols=107 Identities=14% Similarity=0.176 Sum_probs=64.4
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcc----ccccccceeEEEee-CCCCCHHHH
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA----GVKKYFSFRACAYV-SEDFDAVGV 204 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~----~~~~~f~~~~wv~v-~~~~~~~~i 204 (261)
.+++|.+..++.+...+..+ .-.+..-++|+.|+||||+|+.+++.. ....|.|+..|... +......+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 35788888889999998643 234677899999999999999887742 12345666666552 33334444
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCeEEEEEeCCCCCChhhHHHhhc
Q 041190 205 TKVILQAAAGSADVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVWTNLCK 257 (261)
Q Consensus 205 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~~~~~w~~l~~ 257 (261)
.+++.+.+...+ ..+++-++|+|++...+.+.|+.|..
T Consensus 78 ir~~~~~~~~~p---------------~~~~~kv~iI~~ad~m~~~a~naLLK 115 (313)
T PRK05564 78 IRNIIEEVNKKP---------------YEGDKKVIIIYNSEKMTEQAQNAFLK 115 (313)
T ss_pred HHHHHHHHhcCc---------------ccCCceEEEEechhhcCHHHHHHHHH
Confidence 334444443110 11344455555555555455655543
No 45
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00017 Score=66.81 Aligned_cols=46 Identities=30% Similarity=0.364 Sum_probs=37.3
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+..++.|...+.... -.+.+-++|+.|+||||+|+.+.+.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~ 61 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKC 61 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 358899999999999886532 2455778999999999999999764
No 46
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=7.1e-05 Score=71.04 Aligned_cols=46 Identities=26% Similarity=0.346 Sum_probs=37.1
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+..++.|.+++..+. -.+.+-++|..|+||||+|+.+.+.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKa 61 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKA 61 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999986532 2445679999999999999988765
No 47
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.79 E-value=4.9e-05 Score=62.60 Aligned_cols=54 Identities=20% Similarity=0.129 Sum_probs=35.7
Q ss_pred cchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCC
Q 041190 136 EKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSE 197 (261)
Q Consensus 136 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 197 (261)
+...+.+..++.. .....+.++|++|+|||+||+.+++... ......++++++.
T Consensus 23 ~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~ 76 (226)
T TIGR03420 23 AELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAE 76 (226)
T ss_pred HHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHH
Confidence 4456666666532 2356889999999999999999988632 2222344555443
No 48
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.78 E-value=7.6e-05 Score=61.70 Aligned_cols=110 Identities=25% Similarity=0.298 Sum_probs=66.2
Q ss_pred CCCCCCCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHH
Q 041190 124 PSLVDEEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVG 203 (261)
Q Consensus 124 ~~~~~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~ 203 (261)
+..+....++|.+.+++.|++=...-- .+....-+-++|..|+|||++++.+.+....+. .+ -|.|+..
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G---LR-lIev~k~----- 89 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG---LR-LIEVSKE----- 89 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ce-EEEECHH-----
Confidence 334556679999988888776221100 122455677899999999999999988632221 22 2444431
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCh-hhHHHhhccc
Q 041190 204 VTKVILQAAAGSADVNDLNLLQLQLENQLKNKKFLLVLDDMWSENY-DVWTNLCKPF 259 (261)
Q Consensus 204 i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~~~-~~w~~l~~~l 259 (261)
+..++..+...|+ -+..||+|++||+.=... .....|++.|
T Consensus 90 -------------~L~~l~~l~~~l~--~~~~kFIlf~DDLsFe~~d~~yk~LKs~L 131 (249)
T PF05673_consen 90 -------------DLGDLPELLDLLR--DRPYKFILFCDDLSFEEGDTEYKALKSVL 131 (249)
T ss_pred -------------HhccHHHHHHHHh--cCCCCEEEEecCCCCCCCcHHHHHHHHHh
Confidence 1223334444444 246799999999864432 2455666544
No 49
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.78 E-value=0.0001 Score=61.11 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=27.8
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccccceeEEEe
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAY 194 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 194 (261)
--+.|+|.+|+|||||...+... ....|....+++
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t 48 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLIT 48 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEe
Confidence 45789999999999999999877 667786555543
No 50
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00012 Score=66.53 Aligned_cols=121 Identities=15% Similarity=0.162 Sum_probs=66.8
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHH
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVIL 209 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~ 209 (261)
.+++|.+..+..|..++.... -.+.+-++|++|+||||+|+.+.+......... ...+..+.+...+...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~---~~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIG---NEPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccC---ccccCCCcHHHHHHccCC
Confidence 458999988999999886532 234688999999999999999987632211100 001111111112111110
Q ss_pred HHhc--CC---CCCCCHHHHHHHHHHH-hCCCeEEEEEeCCCCCChhhHHHhhcc
Q 041190 210 QAAA--GS---ADVNDLNLLQLQLENQ-LKNKKFLLVLDDMWSENYDVWTNLCKP 258 (261)
Q Consensus 210 ~~l~--~~---~~~~~~~~~~~~l~~~-l~~kr~LiVlDdvw~~~~~~w~~l~~~ 258 (261)
..+. .. ....+..++...+... ..++.-++|+|++...+.+.++.|...
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKt 144 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKT 144 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHH
Confidence 0010 00 0111222333333221 245667999999999988788876543
No 51
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.76 E-value=0.00017 Score=59.50 Aligned_cols=88 Identities=17% Similarity=0.038 Sum_probs=53.6
Q ss_pred CCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHH----hcC---CCCCCCHH---H
Q 041190 154 GPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQA----AAG---SADVNDLN---L 223 (261)
Q Consensus 154 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~----l~~---~~~~~~~~---~ 223 (261)
-+.-.++.|+|.+|+|||+++.++.... ...-...+|+... .++...+. .+... +.. -....+.. +
T Consensus 20 i~~g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (225)
T PRK09361 20 FERGTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSE 95 (225)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHH
Confidence 3456799999999999999999987652 2223456788876 45554432 22221 110 01122332 2
Q ss_pred HHHHHHHHhCCCeEEEEEeCCC
Q 041190 224 LQLQLENQLKNKKFLLVLDDMW 245 (261)
Q Consensus 224 ~~~~l~~~l~~kr~LiVlDdvw 245 (261)
....+...+..+--++|+|.+-
T Consensus 96 ~i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 96 AIRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHHHhcccEEEEeCcH
Confidence 3344444454677899999984
No 52
>PRK07261 topology modulation protein; Provisional
Probab=97.75 E-value=9.8e-05 Score=58.37 Aligned_cols=35 Identities=26% Similarity=0.255 Sum_probs=25.4
Q ss_pred EEeEeecCCCChHHHHHHHhhccccc-cccceeEEE
Q 041190 159 VIPITGMGGLGKTTLAQLVFNDAGVK-KYFSFRACA 193 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv 193 (261)
-|.|+|++|+||||||+.+....... -+.|...|-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~ 37 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ 37 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec
Confidence 47899999999999999997664332 134545553
No 53
>PRK08116 hypothetical protein; Validated
Probab=97.74 E-value=0.00011 Score=62.34 Aligned_cols=82 Identities=26% Similarity=0.206 Sum_probs=47.4
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCeE
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGSADVNDLNLLQLQLENQLKNKKF 237 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~ 237 (261)
.-+.++|.+|+|||+||..+++.. .......++++ ..+++..+....... ...+..+ +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l--~~~~~~v~~~~------~~~ll~~i~~~~~~~-~~~~~~~----~~~~l~~~d- 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVN------FPQLLNRIKSTYKSS-GKEDENE----IIRSLVNAD- 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEE------HHHHHHHHHHHHhcc-ccccHHH----HHHHhcCCC-
Confidence 358899999999999999999973 22222344554 334455554443311 1112222 333344333
Q ss_pred EEEEeCCCCCChhhHH
Q 041190 238 LLVLDDMWSENYDVWT 253 (261)
Q Consensus 238 LiVlDdvw~~~~~~w~ 253 (261)
||||||+-......|.
T Consensus 181 lLviDDlg~e~~t~~~ 196 (268)
T PRK08116 181 LLILDDLGAERDTEWA 196 (268)
T ss_pred EEEEecccCCCCCHHH
Confidence 8999999544334564
No 54
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.73 E-value=3.7e-05 Score=68.19 Aligned_cols=53 Identities=23% Similarity=0.114 Sum_probs=39.3
Q ss_pred CCCccccccchHHHHHHHhhCCCCC-------CCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 128 DEEEVYGREKDKEVIVGLLLGDDLN-------SGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...++.|.+..++.|.+.+...-.. +-...+-+.++|++|+|||++|+.+++.
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 3456889999999999876432100 1123455889999999999999999987
No 55
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.00019 Score=65.60 Aligned_cols=46 Identities=28% Similarity=0.393 Sum_probs=36.3
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+..+..|...+.... -.+.+-++|++|+||||+|+.+.+.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 458998888888888775432 2356789999999999999999775
No 56
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.71 E-value=7e-05 Score=67.02 Aligned_cols=53 Identities=21% Similarity=0.084 Sum_probs=39.3
Q ss_pred CCCccccccchHHHHHHHhhCCCC-------CCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 128 DEEEVYGREKDKEVIVGLLLGDDL-------NSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...++.|++..+++|.+.+...-. -+-...+-+.++|++|+|||++|+.+++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence 334688999999999887643110 01234566889999999999999999986
No 57
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.71 E-value=0.00015 Score=59.08 Aligned_cols=89 Identities=11% Similarity=0.101 Sum_probs=55.5
Q ss_pred CCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHh-c---------CCCCCCCHHH
Q 041190 154 GPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAA-A---------GSADVNDLNL 223 (261)
Q Consensus 154 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l-~---------~~~~~~~~~~ 223 (261)
-+.-+++.|+|++|+|||+++.++... ........+|+.... ++...+.+. .... . ...+..+...
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~ 84 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGV 84 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHH
Confidence 456789999999999999999988765 222345678888876 665554443 2221 1 1111122223
Q ss_pred HHHHHHHHhCC-CeEEEEEeCCCC
Q 041190 224 LQLQLENQLKN-KKFLLVLDDMWS 246 (261)
Q Consensus 224 ~~~~l~~~l~~-kr~LiVlDdvw~ 246 (261)
....+.+.+.. +.-+||+|.+-.
T Consensus 85 ~~~~l~~~~~~~~~~lvVIDSis~ 108 (209)
T TIGR02237 85 AIQKTSKFIDRDSASLVVVDSFTA 108 (209)
T ss_pred HHHHHHHHHhhcCccEEEEeCcHH
Confidence 35555555543 567999999864
No 58
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.71 E-value=0.00029 Score=61.15 Aligned_cols=46 Identities=24% Similarity=0.242 Sum_probs=38.8
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+..++.+..++... .-..++.++|++|+||||+|+.+++.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 46899999999999998643 23568888999999999999999886
No 59
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.70 E-value=0.0023 Score=62.34 Aligned_cols=51 Identities=29% Similarity=0.391 Sum_probs=37.7
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+.-++.|.+++.........+..++.++|++|+|||++|+.+.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 347888888888888664321111223457899999999999999999887
No 60
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.69 E-value=0.00029 Score=62.01 Aligned_cols=104 Identities=15% Similarity=0.082 Sum_probs=64.8
Q ss_pred hHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcccccccccee-EEEeeCCCC-CHHHHHHHHHHHhc-C
Q 041190 138 DKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFR-ACAYVSEDF-DAVGVTKVILQAAA-G 214 (261)
Q Consensus 138 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~-~wv~v~~~~-~~~~i~~~i~~~l~-~ 214 (261)
-...+++.+..-. +-.-..|+|.+|+|||||++.+.+.... ++-+.. +|+.+.+.. .+.++++.+...+. .
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~i~~-~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAAVAA-NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 3445777776532 1234599999999999999998886321 122443 677777654 67788888877666 2
Q ss_pred CCCCCCHHH-----HHHHHHHHh--CCCeEEEEEeCCCCC
Q 041190 215 SADVNDLNL-----LQLQLENQL--KNKKFLLVLDDMWSE 247 (261)
Q Consensus 215 ~~~~~~~~~-----~~~~l~~~l--~~kr~LiVlDdvw~~ 247 (261)
..+...... ....+-+++ .+++++||+|++-..
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 222222111 112222223 589999999999543
No 61
>PRK12377 putative replication protein; Provisional
Probab=97.69 E-value=0.00017 Score=60.38 Aligned_cols=80 Identities=20% Similarity=0.086 Sum_probs=46.6
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCeE
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGSADVNDLNLLQLQLENQLKNKKF 237 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~ 237 (261)
..+.++|.+|+|||+||..+.+... .....+.+++++ +++..+-.... +......+ .+.+ .+--
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v~~i~~~------~l~~~l~~~~~---~~~~~~~~----l~~l-~~~d 165 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLL--AKGRSVIVVTVP------DVMSRLHESYD---NGQSGEKF----LQEL-CKVD 165 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEEEHH------HHHHHHHHHHh---ccchHHHH----HHHh-cCCC
Confidence 5789999999999999999998742 222234555543 34444433322 11122222 2222 4667
Q ss_pred EEEEeCCCCCChhhHH
Q 041190 238 LLVLDDMWSENYDVWT 253 (261)
Q Consensus 238 LiVlDdvw~~~~~~w~ 253 (261)
||||||+-......|.
T Consensus 166 LLiIDDlg~~~~s~~~ 181 (248)
T PRK12377 166 LLVLDEIGIQRETKNE 181 (248)
T ss_pred EEEEcCCCCCCCCHHH
Confidence 8999999554333454
No 62
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.69 E-value=1.9e-05 Score=59.99 Aligned_cols=87 Identities=21% Similarity=0.129 Sum_probs=49.2
Q ss_pred EeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcC-CCCCCCHHHHHHHHHHHhCCCeEE
Q 041190 160 IPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAG-SADVNDLNLLQLQLENQLKNKKFL 238 (261)
Q Consensus 160 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~-~~~~~~~~~~~~~l~~~l~~kr~L 238 (261)
|-++|++|+|||+||+.+.... .. ...-+.++...+..+++...--.-+. ......... .+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~--~~---~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~---a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL--GR---PVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVR---AM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH--TC---EEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCT---TH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh--hc---ceEEEEeccccccccceeeeeecccccccccccccc---cc-----cceeE
Confidence 5789999999999999998863 11 12336777776766554321111000 000000000 00 18899
Q ss_pred EEEeCCCCCChhhHHHhhccc
Q 041190 239 LVLDDMWSENYDVWTNLCKPF 259 (261)
Q Consensus 239 iVlDdvw~~~~~~w~~l~~~l 259 (261)
+|||++....++.+..|...|
T Consensus 69 l~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHH
T ss_pred EEECCcccCCHHHHHHHHHHH
Confidence 999999987766777665544
No 63
>PRK08727 hypothetical protein; Validated
Probab=97.68 E-value=0.00016 Score=60.11 Aligned_cols=38 Identities=24% Similarity=0.195 Sum_probs=27.5
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCC
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSE 197 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 197 (261)
..+.++|.+|+|||+|++.+++.. ........|+++.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~--~~~~~~~~y~~~~~ 79 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA--EQAGRSSAYLPLQA 79 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEeHHH
Confidence 459999999999999999998763 22222345666543
No 64
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.67 E-value=0.00031 Score=58.23 Aligned_cols=92 Identities=18% Similarity=0.104 Sum_probs=56.7
Q ss_pred CCCceEEeEeecCCCChHHHHHHHhhccccccc----cceeEEEeeCCCCCHHHHHHHHHHHhcCC----------CCCC
Q 041190 154 GPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKY----FSFRACAYVSEDFDAVGVTKVILQAAAGS----------ADVN 219 (261)
Q Consensus 154 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~i~~~i~~~l~~~----------~~~~ 219 (261)
-+.-.++.|+|++|+|||+|+.++.-....... ....+|+...+.++...+.. +++..+.. ....
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecC
Confidence 345689999999999999999999744212221 24678998888777655433 33333210 0112
Q ss_pred CHH---HHHHHHHHHh-CC-CeEEEEEeCCCC
Q 041190 220 DLN---LLQLQLENQL-KN-KKFLLVLDDMWS 246 (261)
Q Consensus 220 ~~~---~~~~~l~~~l-~~-kr~LiVlDdvw~ 246 (261)
+.. .+...+...+ +. +--|||+|.+..
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 222 3334444444 34 778999999975
No 65
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.00037 Score=65.51 Aligned_cols=46 Identities=24% Similarity=0.322 Sum_probs=38.4
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+..++.|.+++.... -.+.+-++|++|+||||+|+.+.+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~ 60 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKC 60 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999997532 2467889999999999999988765
No 66
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.65 E-value=0.00012 Score=67.31 Aligned_cols=52 Identities=23% Similarity=0.129 Sum_probs=37.5
Q ss_pred CccccccchHHHHHHHhhCCCC-------CCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDL-------NSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.++.|.+..+++|.+.+...-. -+-+..+-+.++|++|+|||++|+.+++..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh
Confidence 4577888888888887542100 012234558899999999999999999874
No 67
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.00042 Score=65.03 Aligned_cols=46 Identities=24% Similarity=0.320 Sum_probs=37.9
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+..++.|.+++.... -.+.+-++|..|+||||+|+.+.+.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAka 61 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKS 61 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999996542 3456788999999999999988765
No 68
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.63 E-value=0.00024 Score=68.76 Aligned_cols=44 Identities=25% Similarity=0.301 Sum_probs=36.8
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 131 EVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++||+.+.+.++..|.... ..-+-++|++|+|||++|+.+.+.
T Consensus 183 ~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred cccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999997642 233568999999999999999876
No 69
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.61 E-value=0.00028 Score=59.66 Aligned_cols=50 Identities=22% Similarity=0.269 Sum_probs=33.3
Q ss_pred ccccccchHHHHHHHhhC---------CCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 131 EVYGREKDKEVIVGLLLG---------DDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~---------~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++|.+.-++.|.++... ......+....+.++|++|+||||+|+.+.+.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 478877666666543211 01112344567889999999999999999765
No 70
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.00057 Score=63.54 Aligned_cols=46 Identities=28% Similarity=0.372 Sum_probs=37.1
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+..++.|.+++.... -.+.+-++|++|+||||+|+.+.+.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~ 61 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKS 61 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 358899999999999886532 2345678999999999999988765
No 71
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.00049 Score=63.64 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=37.5
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+.-++.|.+++.... -...+-++|++|+||||+|+.+.+.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~ 61 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKC 61 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999996532 2346789999999999999888765
No 72
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.60 E-value=0.0037 Score=57.59 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=21.2
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.-.++.++|++|+||||++..+...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999887653
No 73
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00016 Score=67.57 Aligned_cols=107 Identities=20% Similarity=0.258 Sum_probs=65.4
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHH
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVIL 209 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~ 209 (261)
.+=+|.++-++.|++.|.-......-+-+++..||++|+|||.|++.|.+. ....| .+ +.+++-.+..+|...
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~a--l~Rkf-vR--~sLGGvrDEAEIRGH-- 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKA--LGRKF-VR--ISLGGVRDEAEIRGH-- 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHH--hCCCE-EE--EecCccccHHHhccc--
Confidence 345788999999999886543223344579999999999999999999987 44444 12 233443333322211
Q ss_pred HHhcCCCCCCCH-HHHHHHHHHHhCCCeEEEEEeCCCCCC
Q 041190 210 QAAAGSADVNDL-NLLQLQLENQLKNKKFLLVLDDMWSEN 248 (261)
Q Consensus 210 ~~l~~~~~~~~~-~~~~~~l~~~l~~kr~LiVlDdvw~~~ 248 (261)
..+..+++ ..+++-++ ...-++-|++||++....
T Consensus 396 ----RRTYIGamPGrIiQ~mk-ka~~~NPv~LLDEIDKm~ 430 (782)
T COG0466 396 ----RRTYIGAMPGKIIQGMK-KAGVKNPVFLLDEIDKMG 430 (782)
T ss_pred ----cccccccCChHHHHHHH-HhCCcCCeEEeechhhcc
Confidence 11111221 22222222 235678899999998875
No 74
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=0.00045 Score=65.01 Aligned_cols=46 Identities=24% Similarity=0.365 Sum_probs=37.0
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+.-+..|.+++.... -.+.+-++|+.|+||||+|+.+.+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~ 61 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKS 61 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 458898888899999886532 3466789999999999999988544
No 75
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.58 E-value=5.7e-05 Score=55.79 Aligned_cols=23 Identities=43% Similarity=0.511 Sum_probs=20.9
Q ss_pred EEeEeecCCCChHHHHHHHhhcc
Q 041190 159 VIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
+|.|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998863
No 76
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.58 E-value=0.00026 Score=66.86 Aligned_cols=46 Identities=24% Similarity=0.350 Sum_probs=38.1
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+..+..|.+++.... -.+.+-++|+.|+||||+|+.+.+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~ 61 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKS 61 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 468999999999999986532 2457889999999999999988765
No 77
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=0.00055 Score=61.48 Aligned_cols=47 Identities=21% Similarity=0.192 Sum_probs=37.2
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.+++|.+.-++.|..++... .-.+.+-++|++|+||||+|+.+.+..
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~-----~~~ha~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG-----RVGHGYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred hhccChHHHHHHHHHHHHhC-----CcceeEEEECCCCCCHHHHHHHHHHHh
Confidence 46889988889999888643 223457789999999999999887653
No 78
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.54 E-value=0.00027 Score=69.17 Aligned_cols=45 Identities=29% Similarity=0.376 Sum_probs=37.2
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..++||+++++.++..|.... ..-+.++|++|+|||++|+.+...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999997642 223469999999999999988775
No 79
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.53 E-value=0.00028 Score=56.18 Aligned_cols=80 Identities=28% Similarity=0.272 Sum_probs=43.1
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCe
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGSADVNDLNLLQLQLENQLKNKK 236 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr 236 (261)
..-+.++|.+|+|||.||..+.+..- ...+ ...|+++ .+ ++..+............... +. +-
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~-~~g~-~v~f~~~------~~----L~~~l~~~~~~~~~~~~~~~----l~-~~ 109 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAI-RKGY-SVLFITA------SD----LLDELKQSRSDGSYEELLKR----LK-RV 109 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHH-HTT---EEEEEH------HH----HHHHHHCCHCCTTHCHHHHH----HH-TS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhc-cCCc-ceeEeec------Cc----eeccccccccccchhhhcCc----cc-cc
Confidence 35699999999999999999987531 1222 2445543 23 33344422222233333322 22 34
Q ss_pred EEEEEeCCCCCChhhHH
Q 041190 237 FLLVLDDMWSENYDVWT 253 (261)
Q Consensus 237 ~LiVlDdvw~~~~~~w~ 253 (261)
=|+||||+-......|.
T Consensus 110 dlLilDDlG~~~~~~~~ 126 (178)
T PF01695_consen 110 DLLILDDLGYEPLSEWE 126 (178)
T ss_dssp SCEEEETCTSS---HHH
T ss_pred cEecccccceeeecccc
Confidence 57789999877555554
No 80
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.53 E-value=0.00063 Score=63.56 Aligned_cols=46 Identities=24% Similarity=0.440 Sum_probs=37.7
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+..++.+.+.+.... -.+.+-++|++|+||||+|+.+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~ 61 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKA 61 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999886532 2457889999999999999998765
No 81
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.52 E-value=8.8e-05 Score=64.91 Aligned_cols=53 Identities=17% Similarity=0.240 Sum_probs=43.0
Q ss_pred CCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 129 EEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
..+++|.++.++++++++.......+.+-+++.++|++|+||||||+.+.+..
T Consensus 50 ~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 50 DHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred chhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34799999999999999877432123456889999999999999999998774
No 82
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.52 E-value=0.0012 Score=54.41 Aligned_cols=91 Identities=16% Similarity=0.000 Sum_probs=57.2
Q ss_pred CCCceEEeEeecCCCChHHHHHHHhhcccccccc------ceeEEEeeCCCCCHHHHHHHHHHHhcCC----------CC
Q 041190 154 GPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYF------SFRACAYVSEDFDAVGVTKVILQAAAGS----------AD 217 (261)
Q Consensus 154 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f------~~~~wv~v~~~~~~~~i~~~i~~~l~~~----------~~ 217 (261)
-+.-.++.|+|.+|+|||+|+.++..... ..- ...+|+.....++...+. .+....... ..
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~--~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~ 92 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQ--LPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVAR 92 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhh--cccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEe
Confidence 34567999999999999999998865421 122 346788887777765544 333332210 11
Q ss_pred CCCHHHHHHHHHHHhC----CCeEEEEEeCCCCC
Q 041190 218 VNDLNLLQLQLENQLK----NKKFLLVLDDMWSE 247 (261)
Q Consensus 218 ~~~~~~~~~~l~~~l~----~kr~LiVlDdvw~~ 247 (261)
..+.+++...+..... .+--|||+|.+...
T Consensus 93 ~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l 126 (226)
T cd01393 93 PYNGEQQLEIVEELERIMSSGRVDLVVVDSVAAL 126 (226)
T ss_pred CCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchh
Confidence 2345555555555442 45569999999653
No 83
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.48 E-value=0.00016 Score=68.06 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=39.4
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.++.++.+..+|..... ......++.++|++|+||||+++.+...
T Consensus 84 del~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4688888888899999876422 1223457999999999999999999886
No 84
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.48 E-value=0.00078 Score=63.63 Aligned_cols=46 Identities=28% Similarity=0.327 Sum_probs=37.1
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+.-++.|...+.... -.+.+-++|+.|+||||+|+.+.+.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~ 61 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKG 61 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999998886532 2345678999999999999999776
No 85
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.47 E-value=0.00044 Score=61.96 Aligned_cols=51 Identities=22% Similarity=0.092 Sum_probs=37.5
Q ss_pred CccccccchHHHHHHHhhCCCC-------CCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDL-------NSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++.|.+..+++|.+.+...-. -+-...+-+.++|++|+|||+||+.+.+.
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 4588888888888876542100 01234567889999999999999999986
No 86
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.47 E-value=0.0004 Score=60.04 Aligned_cols=101 Identities=18% Similarity=0.190 Sum_probs=58.1
Q ss_pred cccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhc
Q 041190 134 GREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAA 213 (261)
Q Consensus 134 gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~ 213 (261)
++........+++..-. ..+...-+.++|..|+|||.||..+.+..- +..+. +.+++++ .++.++-..+.
T Consensus 135 ~~~~~~~~~~~fi~~~~--~~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~-v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYP--PGEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGVS-STLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhh--ccCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCC-EEEEEHH------HHHHHHHHHHh
Confidence 34444444555554322 122346789999999999999999998742 22232 3445543 34444444433
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCeEEEEEeCCCCCChhhHH
Q 041190 214 GSADVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVWT 253 (261)
Q Consensus 214 ~~~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~~~~~w~ 253 (261)
..+..+.... + .+-=||||||+-......|.
T Consensus 205 ----~~~~~~~l~~----l-~~~dlLiIDDiG~e~~s~~~ 235 (306)
T PRK08939 205 ----DGSVKEKIDA----V-KEAPVLMLDDIGAEQMSSWV 235 (306)
T ss_pred ----cCcHHHHHHH----h-cCCCEEEEecCCCccccHHH
Confidence 1122222222 2 35678999999876656674
No 87
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0035 Score=58.92 Aligned_cols=108 Identities=21% Similarity=0.259 Sum_probs=67.0
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHH
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVIL 209 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~ 209 (261)
.+=+|.++-++.|.++|--....++-+-+++..+|++|+|||.+++.|... ....| +| +++++-.+..+|...
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkF-fR--fSvGG~tDvAeIkGH-- 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA--LNRKF-FR--FSVGGMTDVAEIKGH-- 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH--hCCce-EE--EeccccccHHhhccc--
Confidence 445788899999999987755445667889999999999999999999887 43333 12 234444343332211
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHhCCCeEEEEEeCCCCCC
Q 041190 210 QAAAGSADVNDLNLLQLQLENQLKNKKFLLVLDDMWSEN 248 (261)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~~ 248 (261)
....-..-...+++.+++ .+-.+-|+.||+|...-
T Consensus 484 ---RRTYVGAMPGkiIq~LK~-v~t~NPliLiDEvDKlG 518 (906)
T KOG2004|consen 484 ---RRTYVGAMPGKIIQCLKK-VKTENPLILIDEVDKLG 518 (906)
T ss_pred ---ceeeeccCChHHHHHHHh-hCCCCceEEeehhhhhC
Confidence 001111122233333333 34567788899997653
No 88
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.43 E-value=0.00065 Score=65.73 Aligned_cols=118 Identities=16% Similarity=0.216 Sum_probs=69.2
Q ss_pred CccccccchHHHHHHHhhCCCC---CCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHH
Q 041190 130 EEVYGREKDKEVIVGLLLGDDL---NSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTK 206 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~ 206 (261)
..++|.+..++.|...+..... +.+....++.++|++|+|||+||+.+.... +...+.+++++-....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhcc----
Confidence 4578888888888887764211 012335578899999999999999998763 1223444544421111
Q ss_pred HHHHHhcCCCC--CCCHHHHHHHHHHHhC-CCeEEEEEeCCCCCChhhHHHhhccc
Q 041190 207 VILQAAAGSAD--VNDLNLLQLQLENQLK-NKKFLLVLDDMWSENYDVWTNLCKPF 259 (261)
Q Consensus 207 ~i~~~l~~~~~--~~~~~~~~~~l~~~l~-~kr~LiVlDdvw~~~~~~w~~l~~~l 259 (261)
.+..-++.... ..+. ...+.+.++ ....+|+||++....++.++.|...|
T Consensus 525 ~~~~lig~~~gyvg~~~---~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~l 577 (731)
T TIGR02639 525 TVSRLIGAPPGYVGFEQ---GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVM 577 (731)
T ss_pred cHHHHhcCCCCCcccch---hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhh
Confidence 11122231111 1111 112333443 34469999999999888888776544
No 89
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.42 E-value=0.00086 Score=56.03 Aligned_cols=83 Identities=17% Similarity=0.168 Sum_probs=48.6
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCe
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGSADVNDLNLLQLQLENQLKNKK 236 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr 236 (261)
...+.++|.+|+|||+|+..+.+.... .-...++++ ..+++..+-.... . ....... +.+.+. +.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~--~g~~v~~it------~~~l~~~l~~~~~-~-~~~~~~~----~l~~l~-~~ 163 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLL--RGKSVLIIT------VADIMSAMKDTFS-N-SETSEEQ----LLNDLS-NV 163 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEE------HHHHHHHHHHHHh-h-ccccHHH----HHHHhc-cC
Confidence 357899999999999999999987322 112334443 3444444433322 1 1112222 333344 44
Q ss_pred EEEEEeCCCCCChhhHHH
Q 041190 237 FLLVLDDMWSENYDVWTN 254 (261)
Q Consensus 237 ~LiVlDdvw~~~~~~w~~ 254 (261)
=||||||+-......|..
T Consensus 164 dlLvIDDig~~~~s~~~~ 181 (244)
T PRK07952 164 DLLVIDEIGVQTESRYEK 181 (244)
T ss_pred CEEEEeCCCCCCCCHHHH
Confidence 588889998876566753
No 90
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.41 E-value=0.00046 Score=57.45 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=21.6
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...+.|+|++|+|||+|++.+++.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~ 68 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE 68 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999886
No 91
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.41 E-value=0.00024 Score=56.30 Aligned_cols=26 Identities=46% Similarity=0.667 Sum_probs=23.3
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
++..+|.++|++|+||||+|+.+++.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~ 30 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYER 30 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 35579999999999999999999886
No 92
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.41 E-value=0.0006 Score=57.38 Aligned_cols=82 Identities=24% Similarity=0.119 Sum_probs=48.1
Q ss_pred CceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhCCC
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGSADVNDLNLLQLQLENQLKNK 235 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k 235 (261)
+..-+.++|.+|+|||.||..+.+..- +..+. +.+++ ..+++.++...... ......+...+ .+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~s-v~f~~------~~el~~~Lk~~~~~---~~~~~~l~~~l-----~~ 167 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGIS-VLFIT------APDLLSKLKAAFDE---GRLEEKLLREL-----KK 167 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCe-EEEEE------HHHHHHHHHHHHhc---CchHHHHHHHh-----hc
Confidence 345689999999999999999988743 32232 23344 33444444443331 11122222212 24
Q ss_pred eEEEEEeCCCCCChhhHH
Q 041190 236 KFLLVLDDMWSENYDVWT 253 (261)
Q Consensus 236 r~LiVlDdvw~~~~~~w~ 253 (261)
-=|+||||+-......|.
T Consensus 168 ~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 168 VDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred CCEEEEecccCccCCHHH
Confidence 458889999887655664
No 93
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.40 E-value=0.0018 Score=57.13 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=37.5
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+..++.|.+++... .-.+.+-++|++|+||||+|+.+.+.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~ 59 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKA 59 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46799999999999988643 23457789999999999999888655
No 94
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.40 E-value=0.0018 Score=60.74 Aligned_cols=46 Identities=26% Similarity=0.268 Sum_probs=37.8
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+..++.|.+++... .-.+.+-++|+.|+||||+|+.+.+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~ 58 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARS 58 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999653 23456789999999999999988765
No 95
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.39 E-value=0.0012 Score=57.54 Aligned_cols=92 Identities=15% Similarity=0.123 Sum_probs=57.7
Q ss_pred CCCceEEeEeecCCCChHHHHHHHhhcccccccc----ceeEEEeeCCCCCHHHHHHHHHHHhcCCC----------CCC
Q 041190 154 GPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYF----SFRACAYVSEDFDAVGVTKVILQAAAGSA----------DVN 219 (261)
Q Consensus 154 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~wv~v~~~~~~~~i~~~i~~~l~~~~----------~~~ 219 (261)
-+.-.++-|+|++|+|||+++.+++-.......+ ...+|+...++++...+.. +++.++... ...
T Consensus 99 i~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 99 IETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred ccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCCChHhhhccEEEEeCC
Confidence 3456899999999999999999887542221111 3578999988888777654 344444110 111
Q ss_pred CH---HHHHHHHHHHhCC--CeEEEEEeCCCC
Q 041190 220 DL---NLLQLQLENQLKN--KKFLLVLDDMWS 246 (261)
Q Consensus 220 ~~---~~~~~~l~~~l~~--kr~LiVlDdvw~ 246 (261)
+. ..+...+...+.. +--|||+|.+-.
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa 209 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTA 209 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchH
Confidence 11 2334455555543 445999999865
No 96
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.39 E-value=0.0014 Score=54.02 Aligned_cols=50 Identities=26% Similarity=0.360 Sum_probs=31.6
Q ss_pred CCccccc-cchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 129 EEEVYGR-EKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 129 ~~~~~gr-~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
++.++|. ++..-.....+.... +.....+.|+|..|+|||.|.+.+++..
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~~~ 58 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIANEA 58 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3445564 333334444443321 2345668999999999999999999873
No 97
>PRK06696 uridine kinase; Validated
Probab=97.38 E-value=0.00023 Score=58.76 Aligned_cols=43 Identities=21% Similarity=0.191 Sum_probs=34.2
Q ss_pred ccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 135 REKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 135 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
|..-+++|.+.+... ...+..+|+|.|.+|+||||||+.+.+.
T Consensus 3 ~~~~~~~la~~~~~~---~~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 3 RKQLIKELAEHILTL---NLTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHHHHh---CCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 555677777777653 2346789999999999999999999876
No 98
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.38 E-value=0.0012 Score=64.40 Aligned_cols=47 Identities=26% Similarity=0.249 Sum_probs=37.8
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.+++|.+..++.|..++.... -.+.+.++|+.|+||||+|+.+.+..
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999986532 23567899999999999999887653
No 99
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.37 E-value=0.0052 Score=59.76 Aligned_cols=51 Identities=25% Similarity=0.326 Sum_probs=39.6
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+.+|.+.-++.|+++|.........+..++.++|++|+||||+++.+...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~ 372 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA 372 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999998887422112234568999999999999999999876
No 100
>PRK08181 transposase; Validated
Probab=97.37 E-value=0.00045 Score=58.57 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=20.5
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.-+.++|++|+|||.||..+.+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~ 129 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA 129 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH
Confidence 34899999999999999999875
No 101
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.36 E-value=0.00082 Score=55.04 Aligned_cols=108 Identities=19% Similarity=0.128 Sum_probs=63.0
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHH
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVIL 209 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~ 209 (261)
.++||.++-++.|.-+-.. .+.+-+-|.||+|+||||-+..+.+..--..+=+...=.+.|......-+...|-
T Consensus 27 ~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK 100 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIK 100 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHH
Confidence 4689998888877665543 3577889999999999996665554311111112233345555444433332221
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHh-CCCeEEEEEeCCCCCChhhHHHhhc
Q 041190 210 QAAAGSADVNDLNLLQLQLENQL-KNKKFLLVLDDMWSENYDVWTNLCK 257 (261)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~l~~~l-~~kr~LiVlDdvw~~~~~~w~~l~~ 257 (261)
.+.+. +-.| .++--+|+||+..+........++.
T Consensus 101 -~FAQ~-------------kv~lp~grhKIiILDEADSMT~gAQQAlRR 135 (333)
T KOG0991|consen 101 -MFAQK-------------KVTLPPGRHKIIILDEADSMTAGAQQALRR 135 (333)
T ss_pred -HHHHh-------------hccCCCCceeEEEeeccchhhhHHHHHHHH
Confidence 11100 0001 2566789999999988666666654
No 102
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.36 E-value=0.0014 Score=61.75 Aligned_cols=46 Identities=22% Similarity=0.331 Sum_probs=38.1
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+..++.|.+.+... .-..-+-++|+.|+||||+|+.+.+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~g-----ri~ha~L~~Gp~GvGKTt~Ar~lAk~ 69 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETG-----RIAQAFMLTGVRGVGKTTTARILARA 69 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999988653 23456888999999999999998765
No 103
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.36 E-value=0.00053 Score=67.20 Aligned_cols=123 Identities=14% Similarity=0.156 Sum_probs=68.4
Q ss_pred CccccccchHHHHHHHhhCCCC---CCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHH
Q 041190 130 EEVYGREKDKEVIVGLLLGDDL---NSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTK 206 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~ 206 (261)
..++|.+..++.|...+..... +.+.....+.++|++|+|||+||+.+.+.. -..-...+-+..+.-.....
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l--~~~~~~~~~~d~s~~~~~~~--- 583 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF--FGSEDAMIRLDMSEYMEKHT--- 583 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh--cCCccceEEEEchhcccccc---
Confidence 5688999999999887764211 123334566789999999999999887642 11111122333333211111
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHhCCCe-EEEEEeCCCCCChhhHHHhhccc
Q 041190 207 VILQAAAGSADVNDLNLLQLQLENQLKNKK-FLLVLDDMWSENYDVWTNLCKPF 259 (261)
Q Consensus 207 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr-~LiVlDdvw~~~~~~w~~l~~~l 259 (261)
+..-++.+......++ ...+.+.++.++ .+|+||++....++.++.|...|
T Consensus 584 -~~~l~g~~~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~l 635 (821)
T CHL00095 584 -VSKLIGSPPGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQIL 635 (821)
T ss_pred -HHHhcCCCCcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHh
Confidence 1111221111000000 112344444444 68999999999888888876654
No 104
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.36 E-value=0.0014 Score=53.71 Aligned_cols=90 Identities=20% Similarity=0.030 Sum_probs=51.9
Q ss_pred CCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHH----hcC---CCCCCCHHHH--
Q 041190 154 GPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQA----AAG---SADVNDLNLL-- 224 (261)
Q Consensus 154 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~----l~~---~~~~~~~~~~-- 224 (261)
-+.-.++.|+|.+|+||||++.++..... ..-...+|+.....+. +-+..++.. +.. -.+..+..++
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~--~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVETA--GQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEPMDFNEQGR 91 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeCCCHHHHHH
Confidence 34568999999999999999999876521 2222456776655443 222333322 110 0122233222
Q ss_pred -HHHHHHHhCCCeEEEEEeCCCCC
Q 041190 225 -QLQLENQLKNKKFLLVLDDMWSE 247 (261)
Q Consensus 225 -~~~l~~~l~~kr~LiVlDdvw~~ 247 (261)
...+...+..+.-+||+|.+-..
T Consensus 92 ~~~~~~~~~~~~~~lvvIDsi~~l 115 (218)
T cd01394 92 AIQETETFADEKVDLVVVDSATAL 115 (218)
T ss_pred HHHHHHHHHhcCCcEEEEechHHh
Confidence 33455555555679999998543
No 105
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.0015 Score=59.92 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=36.0
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhh
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
.+++|.+.-++.|.+.+..+. -..-+-++|++|+||||+|+.+.+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHH
Confidence 468999988888888885432 234788999999999999988865
No 106
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0012 Score=60.85 Aligned_cols=101 Identities=17% Similarity=0.206 Sum_probs=63.3
Q ss_pred CCccccccchHHHHHHHhhCCCC-C-----CCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHH
Q 041190 129 EEEVYGREKDKEVIVGLLLGDDL-N-----SGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAV 202 (261)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~~~-~-----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 202 (261)
-.++-|.+....+|.+++..-.. . +-...+=+-++|++|+|||.||+.+.+...+ .| +.++.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v--Pf-----~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV--PF-----LSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC--ce-----Eeecch----
Confidence 34577888888888887765211 0 1123445788999999999999999998443 33 333332
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCeEEEEEeCCCCCC
Q 041190 203 GVTKVILQAAAGSADVNDLNLLQLQLENQLKNKKFLLVLDDMWSEN 248 (261)
Q Consensus 203 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~~ 248 (261)
+|. ....+.+...+-..+.+.-..-.+++++|++.-..
T Consensus 258 ----eiv----SGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~ 295 (802)
T KOG0733|consen 258 ----EIV----SGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAIT 295 (802)
T ss_pred ----hhh----cccCcccHHHHHHHHHHHhccCCeEEEeecccccc
Confidence 111 11223344444444455557789999999997654
No 107
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.35 E-value=0.00043 Score=58.75 Aligned_cols=113 Identities=21% Similarity=0.207 Sum_probs=71.2
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEE-EeeCCCCCHHHHHHHH
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRAC-AYVSEDFDAVGVTKVI 208 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w-v~v~~~~~~~~i~~~i 208 (261)
.+++|.+..+..|.+.+... .......||++|+|||+-|.......-..+.|.|++. .++|......-+..++
T Consensus 36 de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki 109 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKI 109 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhh
Confidence 46889999999999988763 4678889999999999988777665433456777653 5666544332111111
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHh--CCCe-EEEEEeCCCCCChhhHHHhhcc
Q 041190 209 LQAAAGSADVNDLNLLQLQLENQL--KNKK-FLLVLDDMWSENYDVWTNLCKP 258 (261)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~l~~~l--~~kr-~LiVlDdvw~~~~~~w~~l~~~ 258 (261)
- +...+........ .-+. -+||||+..+...+.|..|+..
T Consensus 110 k----------~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~ 152 (346)
T KOG0989|consen 110 K----------NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRT 152 (346)
T ss_pred c----------CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHH
Confidence 1 1111111010000 0122 5789999999999999988754
No 108
>PRK05642 DNA replication initiation factor; Validated
Probab=97.34 E-value=0.00074 Score=56.16 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.7
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...+.|+|.+|+|||+|++.+++.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~ 68 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR 68 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999875
No 109
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.34 E-value=0.0008 Score=66.09 Aligned_cols=45 Identities=20% Similarity=0.306 Sum_probs=37.2
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..++||+.++..++..|.... ...+-++|++|+|||++|+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999997643 234558999999999999988776
No 110
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.34 E-value=0.00052 Score=64.70 Aligned_cols=46 Identities=22% Similarity=0.286 Sum_probs=37.6
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+..++.|..++... .-.+.+-++|+.|+||||+|+.+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~-----~i~~a~Lf~Gp~G~GKTtlA~~lA~~ 61 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEG-----RVAHAYLFTGPRGVGKTSTARILAKA 61 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999888643 22456789999999999999999765
No 111
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.33 E-value=0.00071 Score=55.85 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.2
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
....+.++|++|+|||+||+.+++.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3467889999999999999999886
No 112
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.33 E-value=0.0024 Score=57.53 Aligned_cols=76 Identities=21% Similarity=0.187 Sum_probs=42.9
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCe
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGSADVNDLNLLQLQLENQLKNKK 236 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr 236 (261)
...+.|+|++|+|||+|++.+++....+..=....+++. .++...+...+.. ..... +.+.+++ .
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~----~~~~~----~~~~~~~-~ 200 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRN----NKMEE----FKEKYRS-V 200 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHc----CCHHH----HHHHHHh-C
Confidence 457899999999999999999987322111112345543 3334444444431 12222 2233322 2
Q ss_pred EEEEEeCCCCC
Q 041190 237 FLLVLDDMWSE 247 (261)
Q Consensus 237 ~LiVlDdvw~~ 247 (261)
-+|+|||+...
T Consensus 201 dlLiiDDi~~l 211 (405)
T TIGR00362 201 DLLLIDDIQFL 211 (405)
T ss_pred CEEEEehhhhh
Confidence 37788888754
No 113
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.32 E-value=0.0014 Score=55.47 Aligned_cols=88 Identities=19% Similarity=0.279 Sum_probs=53.8
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccccc-eeEEEeeCCCCC-HHHHHHHHHHHhc-C-------CCCCCCHH-----
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYFS-FRACAYVSEDFD-AVGVTKVILQAAA-G-------SADVNDLN----- 222 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~-~~~i~~~i~~~l~-~-------~~~~~~~~----- 222 (261)
.-++|.|.+|+|||||++.+++. ...+|. ..+++-+.+... ..++..++...=. . ..+.....
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 46899999999999999999998 433454 455667776543 3455555543211 1 11111111
Q ss_pred HHHHHHHHHh---CCCeEEEEEeCCCCC
Q 041190 223 LLQLQLENQL---KNKKFLLVLDDMWSE 247 (261)
Q Consensus 223 ~~~~~l~~~l---~~kr~LiVlDdvw~~ 247 (261)
...-.+-+++ .++.+|+++||+-.-
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 1122344555 389999999998553
No 114
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.32 E-value=0.00018 Score=60.34 Aligned_cols=53 Identities=36% Similarity=0.528 Sum_probs=43.4
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcccc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGV 183 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 183 (261)
.+++|.++-++++.=++..... .+..+--+.++|++|.||||||.-+.+...+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv 78 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANELGV 78 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC
Confidence 4689999999998887766433 4566888999999999999999999987543
No 115
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.32 E-value=0.001 Score=65.37 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=69.6
Q ss_pred CccccccchHHHHHHHhhCCCC---CCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHH
Q 041190 130 EEVYGREKDKEVIVGLLLGDDL---NSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTK 206 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~ 206 (261)
..++|.+..++.+...+..... +.+....++.++|++|+|||++|+.+.... .......+.++++.-.....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l--~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL--FDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh--cCCCCcEEEEechhhcccch---
Confidence 4589999999999998875321 012335678899999999999999998752 11111223344444222111
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHhC-CCeEEEEEeCCCCCChhhHHHhhccc
Q 041190 207 VILQAAAGSADVNDLNLLQLQLENQLK-NKKFLLVLDDMWSENYDVWTNLCKPF 259 (261)
Q Consensus 207 ~i~~~l~~~~~~~~~~~~~~~l~~~l~-~kr~LiVlDdvw~~~~~~w~~l~~~l 259 (261)
...-++.++.....++ ...+.+.++ ....+|+||++-...++.|+.|...|
T Consensus 640 -~~~l~g~~~g~~g~~~-~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l 691 (852)
T TIGR03346 640 -VARLIGAPPGYVGYEE-GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVL 691 (852)
T ss_pred -HHHhcCCCCCccCccc-ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHH
Confidence 1111231111101000 012233332 23459999999999888888776554
No 116
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.32 E-value=0.00061 Score=66.76 Aligned_cols=121 Identities=17% Similarity=0.156 Sum_probs=68.6
Q ss_pred CccccccchHHHHHHHhhCCC---CCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHH
Q 041190 130 EEVYGREKDKEVIVGLLLGDD---LNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTK 206 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~ 206 (261)
..++|.+..++.+.+.+.... .+.+....++.++|++|+|||.||+.+... .-......+-++++.-... .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~----~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA----H 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh----h
Confidence 468999999999998886421 112344568899999999999999888664 2111112222333321110 0
Q ss_pred HHHHHhcCCCC--CC-CHHHHHHHHHHHhCCCeEEEEEeCCCCCChhhHHHhhccc
Q 041190 207 VILQAAAGSAD--VN-DLNLLQLQLENQLKNKKFLLVLDDMWSENYDVWTNLCKPF 259 (261)
Q Consensus 207 ~i~~~l~~~~~--~~-~~~~~~~~l~~~l~~kr~LiVlDdvw~~~~~~w~~l~~~l 259 (261)
.+..-++.++. +. ....+...++ +....+|+||++-...++.++.|...|
T Consensus 640 ~~~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~l 692 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVF 692 (852)
T ss_pred hhccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHh
Confidence 11111221111 11 1122333333 256689999999988888887765443
No 117
>CHL00181 cbbX CbbX; Provisional
Probab=97.31 E-value=0.0011 Score=56.84 Aligned_cols=50 Identities=30% Similarity=0.214 Sum_probs=32.0
Q ss_pred ccccccchHHHHHHHhh---CC------CCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 131 EVYGREKDKEVIVGLLL---GD------DLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 131 ~~~gr~~~~~~l~~~L~---~~------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++|.+..+++|.++.. -. ..........+.++|++|+||||+|+.+++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 57887766666555421 11 0001112335788999999999999999764
No 118
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.30 E-value=0.0019 Score=57.29 Aligned_cols=46 Identities=20% Similarity=0.332 Sum_probs=37.6
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+..++.+...+... .-.+.+-++|++|+||||+|+.+.+.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~ 62 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARK 62 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999988653 23468889999999999999988665
No 119
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=97.29 E-value=0.0024 Score=54.22 Aligned_cols=93 Identities=19% Similarity=0.068 Sum_probs=63.4
Q ss_pred CCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHH-hc-----CCCCCCCHHHHHH
Q 041190 153 SGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQA-AA-----GSADVNDLNLLQL 226 (261)
Q Consensus 153 ~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~-l~-----~~~~~~~~~~~~~ 226 (261)
+-+.-+++-|+|+.|+||||+|-+++-. .+..-...+|+..-+.++...+.. +... +. ...+.....++..
T Consensus 56 Gl~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~ 132 (279)
T COG0468 56 GLPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAE 132 (279)
T ss_pred CcccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHH
Confidence 4567789999999999999999998766 344444789999999999877543 3333 33 1222223334455
Q ss_pred HHHHHhCCCeEEEEEeCCCCCC
Q 041190 227 QLENQLKNKKFLLVLDDMWSEN 248 (261)
Q Consensus 227 ~l~~~l~~kr~LiVlDdvw~~~ 248 (261)
.+......+--|||+|.|-..-
T Consensus 133 ~~~~~~~~~i~LvVVDSvaa~~ 154 (279)
T COG0468 133 KLARSGAEKIDLLVVDSVAALV 154 (279)
T ss_pred HHHHhccCCCCEEEEecCcccc
Confidence 5555555567899999986643
No 120
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.29 E-value=0.011 Score=53.55 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=19.9
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-+++.++|++|+||||++..+...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~ 244 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAAR 244 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999988776543
No 121
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.29 E-value=0.00089 Score=65.78 Aligned_cols=121 Identities=15% Similarity=0.138 Sum_probs=68.1
Q ss_pred CccccccchHHHHHHHhhCCCC---CCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHH
Q 041190 130 EEVYGREKDKEVIVGLLLGDDL---NSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTK 206 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~ 206 (261)
..++|.+..++.|...+..... +.+....++.++|++|+|||++|+.+.+.. ...-...+.++++.-.. ..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l--~~~~~~~i~id~se~~~-~~--- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM--FDSDDAMVRIDMSEFME-KH--- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh--hcCCCcEEEEEhHHhhh-hh---
Confidence 4588999888888888764211 012334578899999999999999998652 11111223444443211 11
Q ss_pred HHHHHhcCCCC--CCCHHHHHHHHHHHhC-CCeEEEEEeCCCCCChhhHHHhhccc
Q 041190 207 VILQAAAGSAD--VNDLNLLQLQLENQLK-NKKFLLVLDDMWSENYDVWTNLCKPF 259 (261)
Q Consensus 207 ~i~~~l~~~~~--~~~~~~~~~~l~~~l~-~kr~LiVlDdvw~~~~~~w~~l~~~l 259 (261)
.+..-++.+.. ..+.. ..+.+.++ ...-+|+|||+-...++.|+.|...|
T Consensus 642 ~~~~LiG~~pgy~g~~~~---g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~il 694 (857)
T PRK10865 642 SVSRLVGAPPGYVGYEEG---GYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL 694 (857)
T ss_pred hHHHHhCCCCcccccchh---HHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHH
Confidence 11111231111 11111 12233332 23369999999988888887775544
No 122
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.29 E-value=0.0012 Score=57.98 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=24.9
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhccc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFNDAG 182 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 182 (261)
..+..+.|||++|+|||.+|+.+++...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg 173 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMG 173 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcC
Confidence 4578999999999999999999999843
No 123
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.27 E-value=0.00028 Score=69.16 Aligned_cols=45 Identities=24% Similarity=0.390 Sum_probs=37.2
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..++||+.++..++..|.... ..-+-++|++|+||||+|+.+.+.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHH
Confidence 358999999999999997643 233459999999999999999876
No 124
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.27 E-value=0.00077 Score=61.30 Aligned_cols=25 Identities=40% Similarity=0.402 Sum_probs=22.2
Q ss_pred ceEEeEeecCCCChHHHHHHHhhcc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
...+.|+|++|+|||+|++.+.+..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l 154 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Confidence 4569999999999999999999873
No 125
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.27 E-value=0.0054 Score=58.74 Aligned_cols=102 Identities=23% Similarity=0.193 Sum_probs=67.4
Q ss_pred HHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCC-CHHHHHHHHHHHhc-CCC
Q 041190 139 KEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDF-DAVGVTKVILQAAA-GSA 216 (261)
Q Consensus 139 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~i~~~i~~~l~-~~~ 216 (261)
+..|++.|.. ..+.+.+-|..|.|.|||||+-+.... . ..=..+.|.++.++- +...++..++..++ ..+
T Consensus 24 R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~~--~-~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p 95 (894)
T COG2909 24 RPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWREL--A-ADGAAVAWLSLDESDNDPARFLSYLIAALQQATP 95 (894)
T ss_pred cHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHHh--c-CcccceeEeecCCccCCHHHHHHHHHHHHHHhCc
Confidence 4456666654 447899999999999999999888652 1 112358999987754 57788888888887 111
Q ss_pred C-------------CCCHHHHHHHHHHHhC--CCeEEEEEeCCCCCC
Q 041190 217 D-------------VNDLNLLQLQLENQLK--NKKFLLVLDDMWSEN 248 (261)
Q Consensus 217 ~-------------~~~~~~~~~~l~~~l~--~kr~LiVlDdvw~~~ 248 (261)
+ ..+...+...+..-+. .++.++||||.--..
T Consensus 96 ~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~ 142 (894)
T COG2909 96 TLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLIS 142 (894)
T ss_pred cccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccC
Confidence 1 1223334444444332 567899999975543
No 126
>PRK10867 signal recognition particle protein; Provisional
Probab=97.26 E-value=0.0027 Score=57.40 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=19.9
Q ss_pred CCceEEeEeecCCCChHHHHHHHhh
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
....+|.++|++|+||||.+..+..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3478999999999999996655543
No 127
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.26 E-value=0.0027 Score=57.31 Aligned_cols=25 Identities=32% Similarity=0.305 Sum_probs=20.5
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+.++.++|++|+||||++..+...
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999987666443
No 128
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.24 E-value=0.001 Score=65.47 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=36.3
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 131 EVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++||+.++..++..|.... ...+-++|++|+|||++|+.+...
T Consensus 174 ~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH
Confidence 48999999999999997642 233447999999999999988776
No 129
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.23 E-value=0.00027 Score=55.86 Aligned_cols=88 Identities=18% Similarity=0.085 Sum_probs=50.5
Q ss_pred CceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCH---HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHh
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDA---VGVTKVILQAAAGSADVNDLNLLQLQLENQL 232 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~---~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l 232 (261)
...++.++|++|+|||.||+.+.+-..+ +....-+-++++.-... ..+...+... . +.....
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~---~--~~~v~~--------- 66 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSEGDDVESSVSKLLGS---P--PGYVGA--------- 66 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCSHHHCSCHCHHHHHH---T--TCHHHH---------
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccccchHHhhhhhhhhc---c--cceeec---------
Confidence 3568899999999999999999876322 23334455555553231 1111111111 0 011110
Q ss_pred CCCeEEEEEeCCCCCCh-----------hhHHHhhccc
Q 041190 233 KNKKFLLVLDDMWSENY-----------DVWTNLCKPF 259 (261)
Q Consensus 233 ~~kr~LiVlDdvw~~~~-----------~~w~~l~~~l 259 (261)
...-+|+||++....+ ..|+.|...|
T Consensus 67 -~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~l 103 (171)
T PF07724_consen 67 -EEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLL 103 (171)
T ss_dssp -HHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHH
T ss_pred -cchhhhhhHHHhhccccccccchhhHHHHHHHHHHHh
Confidence 0111999999999988 7788776554
No 130
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00099 Score=63.70 Aligned_cols=123 Identities=16% Similarity=0.178 Sum_probs=74.6
Q ss_pred CccccccchHHHHHHHhhCCCC---CCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHH
Q 041190 130 EEVYGREKDKEVIVGLLLGDDL---NSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTK 206 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~ 206 (261)
..++|.+..+..+.+.+..... +.+..+......|++|+|||.||+.+... .-+.-+.-+-+.+|+- ... .
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSEy-~Ek---H 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSEY-MEK---H 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHHH-HHH---H
Confidence 4589999999999988876421 23556778888999999999999988764 2111123333444441 111 1
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHhCCCeE-EEEEeCCCCCChhhHHHhhccc
Q 041190 207 VILQAAAGSADVNDLNLLQLQLENQLKNKKF-LLVLDDMWSENYDVWTNLCKPF 259 (261)
Q Consensus 207 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~-LiVlDdvw~~~~~~w~~l~~~l 259 (261)
.+-+-++.++.--..++ -..|.+..+.++| +|.||+|-..-|+..+-+...|
T Consensus 565 sVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVl 617 (786)
T COG0542 565 SVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVL 617 (786)
T ss_pred HHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHh
Confidence 22222342221111111 2346667778877 8999999888777776655443
No 131
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.23 E-value=0.0022 Score=51.87 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=19.7
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
++++.++|+.|+||||.+-++...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~ 24 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR 24 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHH
Confidence 378999999999999976666554
No 132
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.23 E-value=0.00053 Score=62.32 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=37.1
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
..++|+++.++.+.-.+..+ .-+.+.|++|+|||++|+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag--------~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--------CCEEEECCCChhHHHHHHHHHHHh
Confidence 35899999999988888764 358899999999999999998753
No 133
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.22 E-value=0.0025 Score=57.01 Aligned_cols=51 Identities=14% Similarity=0.119 Sum_probs=37.5
Q ss_pred CccccccchHHHHHHHhhCCCCC----CCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLN----SGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+..++.|.+.+...... ...-.+-+-++|++|+|||++|+.+.+.
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~ 59 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAA 59 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35889999999999999763200 0012456889999999999999888654
No 134
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.22 E-value=0.0018 Score=55.43 Aligned_cols=85 Identities=22% Similarity=0.161 Sum_probs=45.5
Q ss_pred CceEEeEeecCCCChHHHHHHHhhccccc-cccceeEEEeeCCC-CCHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHh
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDAGVK-KYFSFRACAYVSED-FDAVGVTKVILQAAA-GSADVNDLNLLQLQLENQL 232 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~v~~~-~~~~~i~~~i~~~l~-~~~~~~~~~~~~~~l~~~l 232 (261)
+..++.++|++|+||||++..+......+ ..+ .+..|+.... ....+.+....+.++ +.....+...+...+.. +
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~-~ 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR-L 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH-c
Confidence 45799999999999999998887653222 122 2334544331 122333333333344 22222344455444443 3
Q ss_pred CCCeEEEEEeC
Q 041190 233 KNKKFLLVLDD 243 (261)
Q Consensus 233 ~~kr~LiVlDd 243 (261)
.+ .=+|++|.
T Consensus 271 ~~-~d~vliDt 280 (282)
T TIGR03499 271 RD-KDLILIDT 280 (282)
T ss_pred cC-CCEEEEeC
Confidence 43 34777775
No 135
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.21 E-value=0.0031 Score=59.32 Aligned_cols=47 Identities=26% Similarity=0.331 Sum_probs=36.9
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.+++|.+..+..|.+.+... .-...+.++|+.|+||||+|+.+.+..
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~-----ri~ha~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN-----RVAPAYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 35789888888888888643 224677789999999999999887763
No 136
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.21 E-value=0.0029 Score=54.91 Aligned_cols=93 Identities=16% Similarity=0.134 Sum_probs=56.7
Q ss_pred CCCceEEeEeecCCCChHHHHHHHhhccccccc----cceeEEEeeCCCCCHHHHHHHHHHHhcCCC----------CCC
Q 041190 154 GPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKY----FSFRACAYVSEDFDAVGVTKVILQAAAGSA----------DVN 219 (261)
Q Consensus 154 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~i~~~i~~~l~~~~----------~~~ 219 (261)
-+.-.++-|+|++|+|||+++.+++-....... -...+||...++++...+.+ +++.++... ...
T Consensus 92 i~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~gl~~~~~~~~i~i~~~~ 170 (310)
T TIGR02236 92 IETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARGLDPDEVLKNIYVARAY 170 (310)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhhceEEEecC
Confidence 345689999999999999999988755322110 12578999988888777543 344433100 011
Q ss_pred CH---HHHHHHHHHHhCC---CeEEEEEeCCCCC
Q 041190 220 DL---NLLQLQLENQLKN---KKFLLVLDDMWSE 247 (261)
Q Consensus 220 ~~---~~~~~~l~~~l~~---kr~LiVlDdvw~~ 247 (261)
+. ..+...+.+.+.. +--+||+|.+-..
T Consensus 171 ~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~ 204 (310)
T TIGR02236 171 NSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSH 204 (310)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCceEEEEecchHh
Confidence 11 1233445555533 2449999998754
No 137
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0021 Score=55.74 Aligned_cols=98 Identities=18% Similarity=0.146 Sum_probs=59.5
Q ss_pred CccccccchHHHHHHHhhCCCCC-------CCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHH
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLN-------SGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAV 202 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 202 (261)
..+-|.++++++|.+...-.-.+ +-..++=|-+||++|+|||-||+.|.+. ....| +.|..+
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----IrvvgS---- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVGS---- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEeccH----
Confidence 45667888888888865432100 2234556789999999999999999998 44344 444332
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHhC-CCeEEEEEeCCCCC
Q 041190 203 GVTKVILQAAAGSADVNDLNLLQLQLENQLK-NKKFLLVLDDMWSE 247 (261)
Q Consensus 203 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~kr~LiVlDdvw~~ 247 (261)
++.++. .++-..+.+.+.+.-+ ...++|++|++..-
T Consensus 220 ElVqKY---------iGEGaRlVRelF~lArekaPsIIFiDEIDAI 256 (406)
T COG1222 220 ELVQKY---------IGEGARLVRELFELAREKAPSIIFIDEIDAI 256 (406)
T ss_pred HHHHHH---------hccchHHHHHHHHHHhhcCCeEEEEechhhh
Confidence 111111 1122334444444443 45788999988653
No 138
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.19 E-value=0.00033 Score=67.51 Aligned_cols=44 Identities=27% Similarity=0.324 Sum_probs=36.4
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 131 EVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++||+.++..++..|.... ..-+-++|++|+|||++|+.+...
T Consensus 187 ~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999997742 123357999999999999999865
No 139
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.19 E-value=0.0039 Score=56.49 Aligned_cols=27 Identities=30% Similarity=0.231 Sum_probs=23.2
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.++.++.++|.+|+||||++..+....
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 357899999999999999998887653
No 140
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.18 E-value=0.0032 Score=59.46 Aligned_cols=46 Identities=24% Similarity=0.233 Sum_probs=36.7
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+..+..|...+..+. -...+-++|+.|+||||+|+.+.+.
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~ 61 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKA 61 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHH
Confidence 468899988899999886432 2355889999999999999888665
No 141
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.18 E-value=0.0033 Score=57.48 Aligned_cols=26 Identities=35% Similarity=0.374 Sum_probs=22.7
Q ss_pred CceEEeEeecCCCChHHHHHHHhhcc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
....+.|+|++|+|||+|++.+.+..
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~~ 172 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNYI 172 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999999873
No 142
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.16 E-value=0.0055 Score=49.01 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=20.6
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...+-++|+.|+||||+|+.+.+.
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~ 37 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKA 37 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467889999999999999888665
No 143
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.16 E-value=0.0019 Score=60.77 Aligned_cols=76 Identities=28% Similarity=0.342 Sum_probs=54.3
Q ss_pred CCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHh-
Q 041190 154 GPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGSADVNDLNLLQLQLENQL- 232 (261)
Q Consensus 154 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l- 232 (261)
.+.-+++-++|++|.||||||+-|.++...+ ++=|++|...+...+-..|...+.... .+
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaGYs-----VvEINASDeRt~~~v~~kI~~avq~~s--------------~l~ 383 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAGYS-----VVEINASDERTAPMVKEKIENAVQNHS--------------VLD 383 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcCce-----EEEecccccccHHHHHHHHHHHHhhcc--------------ccc
Confidence 4567899999999999999999999874432 556889998888777776666554111 11
Q ss_pred -CCCeEEEEEeCCCCCC
Q 041190 233 -KNKKFLLVLDDMWSEN 248 (261)
Q Consensus 233 -~~kr~LiVlDdvw~~~ 248 (261)
.++..-+|+|++.-..
T Consensus 384 adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 384 ADSRPVCLVIDEIDGAP 400 (877)
T ss_pred cCCCcceEEEecccCCc
Confidence 1456667788887653
No 144
>PRK06526 transposase; Provisional
Probab=97.14 E-value=0.00055 Score=57.60 Aligned_cols=23 Identities=30% Similarity=0.183 Sum_probs=20.4
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.-+.++|++|+|||+||..+...
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHH
Confidence 45899999999999999999765
No 145
>PRK06921 hypothetical protein; Provisional
Probab=97.14 E-value=0.0034 Score=53.24 Aligned_cols=37 Identities=22% Similarity=0.072 Sum_probs=26.9
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccccc-cceeEEEee
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVKKY-FSFRACAYV 195 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~v 195 (261)
...+.++|.+|+|||+|+..+.+.. ... -..+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l--~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANEL--MRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--hhhcCceEEEEEH
Confidence 4678999999999999999999873 222 223455554
No 146
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.13 E-value=0.005 Score=56.70 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=36.7
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+.-+..|.+.+.... -.+.+-++|+.|+||||+|+.+...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~ 61 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKV 61 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 358899999999999996532 2345678999999999999988664
No 147
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.13 E-value=0.0016 Score=56.55 Aligned_cols=98 Identities=19% Similarity=0.063 Sum_probs=60.8
Q ss_pred HHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcC-----
Q 041190 140 EVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAG----- 214 (261)
Q Consensus 140 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~----- 214 (261)
..|-.+|... +-+.-+++-|+|++|+||||||.++.... ...-...+|+...+.++.. .+++++-
T Consensus 41 ~~LD~~Lg~G---Glp~G~iteI~G~~GsGKTtLaL~~~~~~--~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l 110 (321)
T TIGR02012 41 LSLDLALGVG---GLPRGRIIEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNL 110 (321)
T ss_pred HHHHHHhcCC---CCcCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHe
Confidence 4444555311 34566899999999999999998876652 2223346788877765553 2334431
Q ss_pred -CCCCCCHHHHHHHHHHHhC-CCeEEEEEeCCCCC
Q 041190 215 -SADVNDLNLLQLQLENQLK-NKKFLLVLDDMWSE 247 (261)
Q Consensus 215 -~~~~~~~~~~~~~l~~~l~-~kr~LiVlDdvw~~ 247 (261)
-..+...++....+...++ +.--+||+|.|-..
T Consensus 111 ~v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~al 145 (321)
T TIGR02012 111 LVSQPDTGEQALEIAETLVRSGAVDIIVVDSVAAL 145 (321)
T ss_pred EEecCCCHHHHHHHHHHHhhccCCcEEEEcchhhh
Confidence 1123345555555555553 56779999998754
No 148
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.13 E-value=0.0038 Score=58.74 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=37.0
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+..+..|.+.+.... -.+.+-++|+.|+||||+|+.+.+.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~ 61 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKA 61 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999886532 2356678999999999999888765
No 149
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.13 E-value=0.00074 Score=61.11 Aligned_cols=51 Identities=24% Similarity=0.141 Sum_probs=36.7
Q ss_pred CccccccchHHHHHHHhhCCCCC-------CCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLN-------SGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++.|.+..+++|.+.+...-.. +-....-+.++|++|+|||++|+.+.+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e 240 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE 240 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 35778888888888876421000 1123455779999999999999999986
No 150
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.051 Score=48.25 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.7
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+..++.++|+.|+||||++..+...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999998888654
No 151
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.12 E-value=0.0016 Score=53.48 Aligned_cols=108 Identities=24% Similarity=0.298 Sum_probs=64.2
Q ss_pred CCCCCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHH
Q 041190 126 LVDEEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVT 205 (261)
Q Consensus 126 ~~~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~ 205 (261)
.+.-..++|.+.+++.|.+=-..-- .+....-+-+||..|+||+.|++.+.+. +.+..- + -|.|... +
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~e--~~~~gl-r-LVEV~k~-d----- 123 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLNE--YADEGL-R-LVEVDKE-D----- 123 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHHH--HHhcCC-e-EEEEcHH-H-----
Confidence 3455678999888888776222110 1234456789999999999999999887 322221 1 3344331 0
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHhCCCeEEEEEeCCCCCC-hhhHHHhhccc
Q 041190 206 KVILQAAAGSADVNDLNLLQLQLENQLKNKKFLLVLDDMWSEN-YDVWTNLCKPF 259 (261)
Q Consensus 206 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~~-~~~w~~l~~~l 259 (261)
..+...+...|+ ....||+|++||+.=+. ...+..|+++|
T Consensus 124 ------------l~~Lp~l~~~Lr--~~~~kFIlFcDDLSFe~gd~~yK~LKs~L 164 (287)
T COG2607 124 ------------LATLPDLVELLR--ARPEKFILFCDDLSFEEGDDAYKALKSAL 164 (287)
T ss_pred ------------HhhHHHHHHHHh--cCCceEEEEecCCCCCCCchHHHHHHHHh
Confidence 111112222221 24789999999997543 24667777665
No 152
>PRK07667 uridine kinase; Provisional
Probab=97.12 E-value=0.00077 Score=54.33 Aligned_cols=38 Identities=16% Similarity=0.276 Sum_probs=29.6
Q ss_pred HHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 139 KEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 139 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+.|.+.+... .++..+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~----~~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKH----KENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhc----CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45667666543 234589999999999999999999875
No 153
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.11 E-value=0.00092 Score=61.81 Aligned_cols=52 Identities=23% Similarity=0.229 Sum_probs=34.8
Q ss_pred CCccccccchHHHHHHHhh---CCCC---CCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 129 EEEVYGREKDKEVIVGLLL---GDDL---NSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.++.|.+..++++.+++. .... -+....+-+.++|++|+|||+||+.+.+.
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3467888777766665443 1100 01223345889999999999999999886
No 154
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.11 E-value=0.0004 Score=51.52 Aligned_cols=21 Identities=43% Similarity=0.615 Sum_probs=19.5
Q ss_pred EeEeecCCCChHHHHHHHhhc
Q 041190 160 IPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 160 i~I~G~~GiGKTtLa~~v~~~ 180 (261)
|.|.|++|+||||+|+.+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999876
No 155
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.11 E-value=0.0033 Score=53.19 Aligned_cols=95 Identities=19% Similarity=0.179 Sum_probs=49.1
Q ss_pred EEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHH--------HHHh----cCCCCCCCHHHHHH
Q 041190 159 VIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVI--------LQAA----AGSADVNDLNLLQL 226 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i--------~~~l----~~~~~~~~~~~~~~ 226 (261)
.+-+.|++|+|||+||+.+.+. ... ....+++....+..+++... ...+ .......+..-...
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~--lg~---~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 97 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARK--RDR---PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDN 97 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH--hCC---CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCc
Confidence 4568999999999999999864 211 22345555554444443221 0110 00000000000000
Q ss_pred HHHHHhCCCeEEEEEeCCCCCChhhHHHhhccc
Q 041190 227 QLENQLKNKKFLLVLDDMWSENYDVWTNLCKPF 259 (261)
Q Consensus 227 ~l~~~l~~kr~LiVlDdvw~~~~~~w~~l~~~l 259 (261)
.+.... .+...++||++....++.+..|...|
T Consensus 98 ~l~~A~-~~g~~lllDEi~r~~~~~q~~Ll~~L 129 (262)
T TIGR02640 98 RLTLAV-REGFTLVYDEFTRSKPETNNVLLSVF 129 (262)
T ss_pred hHHHHH-HcCCEEEEcchhhCCHHHHHHHHHHh
Confidence 111111 13468999999998877777666544
No 156
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.09 E-value=0.00044 Score=55.75 Aligned_cols=23 Identities=43% Similarity=0.507 Sum_probs=20.9
Q ss_pred EEeEeecCCCChHHHHHHHhhcc
Q 041190 159 VIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
||+|.|++|+||||+|+.+....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L 23 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL 23 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999998763
No 157
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.09 E-value=0.003 Score=53.26 Aligned_cols=102 Identities=25% Similarity=0.211 Sum_probs=61.6
Q ss_pred HHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcccccc---cc-ceeEEEeeCCCCCHHHHHHHHHHHhcCC
Q 041190 140 EVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKK---YF-SFRACAYVSEDFDAVGVTKVILQAAAGS 215 (261)
Q Consensus 140 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~f-~~~~wv~v~~~~~~~~i~~~i~~~l~~~ 215 (261)
..|-++|.. +-+.-.+.-|+|++|+|||.|+-+++-...... .. ...+|+.-...|+...+. +|++..+..
T Consensus 25 ~~lD~~L~G----Gi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~ 99 (256)
T PF08423_consen 25 KSLDELLGG----GIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLD 99 (256)
T ss_dssp HHHHHHTTS----SEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-
T ss_pred HHHHHhhCC----CCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccc
Confidence 345555533 233456999999999999999988865432221 12 347899999999988865 455554310
Q ss_pred ----------CCCCCHHHHH---HHHHHHh-CCCeEEEEEeCCCC
Q 041190 216 ----------ADVNDLNLLQ---LQLENQL-KNKKFLLVLDDMWS 246 (261)
Q Consensus 216 ----------~~~~~~~~~~---~~l~~~l-~~kr~LiVlDdvw~ 246 (261)
....+..++. ..+...+ .++--|||+|.+-.
T Consensus 100 ~~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 100 PEEILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp HHHHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred cchhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHH
Confidence 0122333333 3333333 45677999999855
No 158
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.08 E-value=0.0013 Score=63.62 Aligned_cols=117 Identities=16% Similarity=0.144 Sum_probs=67.7
Q ss_pred ccccccchHHHHHHHhhCCC---CCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHH
Q 041190 131 EVYGREKDKEVIVGLLLGDD---LNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKV 207 (261)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~ 207 (261)
.++|.+..++.|.+.+.... .+.+.....+.++|++|+|||++|+.+.... ... .+.++++.-.... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~~~---~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--GIE---LLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--CCC---cEEeechhhcccc----c
Confidence 47888888888888876421 0023345678999999999999999997763 122 2334444321111 1
Q ss_pred HHHHhcCCCC--CCCHHHHHHHHHHHhC-CCeEEEEEeCCCCCChhhHHHhhccc
Q 041190 208 ILQAAAGSAD--VNDLNLLQLQLENQLK-NKKFLLVLDDMWSENYDVWTNLCKPF 259 (261)
Q Consensus 208 i~~~l~~~~~--~~~~~~~~~~l~~~l~-~kr~LiVlDdvw~~~~~~w~~l~~~l 259 (261)
+..-++.+.. ..+.. ..+.+.++ ....+|+||++....++.|+.|...|
T Consensus 530 ~~~LiG~~~gyvg~~~~---g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~l 581 (758)
T PRK11034 530 VSRLIGAPPGYVGFDQG---GLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVM 581 (758)
T ss_pred HHHHcCCCCCccccccc---chHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHH
Confidence 1111231111 11111 12233333 34579999999999888888776544
No 159
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.07 E-value=0.0056 Score=55.75 Aligned_cols=26 Identities=35% Similarity=0.393 Sum_probs=22.8
Q ss_pred CceEEeEeecCCCChHHHHHHHhhcc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
....+.|+|++|+|||+|++.+.+..
T Consensus 140 ~~npl~L~G~~G~GKTHLl~Ai~~~l 165 (445)
T PRK12422 140 PFNPIYLFGPEGSGKTHLMQAAVHAL 165 (445)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999999873
No 160
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.07 E-value=0.0013 Score=57.08 Aligned_cols=98 Identities=19% Similarity=0.062 Sum_probs=61.1
Q ss_pred HHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcC-----
Q 041190 140 EVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAG----- 214 (261)
Q Consensus 140 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~----- 214 (261)
..|-.+|... +-+.-+++-|+|++|+||||||.+++-.. ...-...+|+...+.++.. .+..++.
T Consensus 41 ~~LD~~Lg~G---Glp~G~iteI~Gp~GsGKTtLal~~~~~~--~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l 110 (325)
T cd00983 41 LSLDIALGIG---GYPKGRIIEIYGPESSGKTTLALHAIAEA--QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNL 110 (325)
T ss_pred HHHHHHhcCC---CccCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEECccccHHHH-----HHHHcCCCHHHh
Confidence 3444555411 34566799999999999999999887552 2223456788887766653 2333331
Q ss_pred -CCCCCCHHHHHHHHHHHhC-CCeEEEEEeCCCCC
Q 041190 215 -SADVNDLNLLQLQLENQLK-NKKFLLVLDDMWSE 247 (261)
Q Consensus 215 -~~~~~~~~~~~~~l~~~l~-~kr~LiVlDdvw~~ 247 (261)
-..+.+.++....+...++ +.--|||+|.|-..
T Consensus 111 ~v~~p~~~eq~l~i~~~li~s~~~~lIVIDSvaal 145 (325)
T cd00983 111 LISQPDTGEQALEIADSLVRSGAVDLIVVDSVAAL 145 (325)
T ss_pred eecCCCCHHHHHHHHHHHHhccCCCEEEEcchHhh
Confidence 1123445555555555543 46779999998654
No 161
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.07 E-value=0.00054 Score=55.87 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=23.1
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+..+|+|.|.+|+|||||++.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999876
No 162
>CHL00176 ftsH cell division protein; Validated
Probab=97.06 E-value=0.001 Score=63.13 Aligned_cols=99 Identities=17% Similarity=0.148 Sum_probs=54.9
Q ss_pred CccccccchHHHHHHH---hhCCCC---CCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHH
Q 041190 130 EEVYGREKDKEVIVGL---LLGDDL---NSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVG 203 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~---L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~ 203 (261)
.++.|.++.++++.+. |..... -+....+-+.++|++|+|||+||+.+.+...+ + ++.++.. .
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~--p-----~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV--P-----FFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC--C-----eeeccHH----H
Confidence 4577877666665554 332210 01223456899999999999999999886321 2 2333221 1
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCeEEEEEeCCCCC
Q 041190 204 VTKVILQAAAGSADVNDLNLLQLQLENQLKNKKFLLVLDDMWSE 247 (261)
Q Consensus 204 i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~ 247 (261)
+. .... ......+...+.......+++|+|||+...
T Consensus 252 f~----~~~~----g~~~~~vr~lF~~A~~~~P~ILfIDEID~l 287 (638)
T CHL00176 252 FV----EMFV----GVGAARVRDLFKKAKENSPCIVFIDEIDAV 287 (638)
T ss_pred HH----HHhh----hhhHHHHHHHHHHHhcCCCcEEEEecchhh
Confidence 10 0000 011122333344455678899999999643
No 163
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.06 E-value=0.0039 Score=47.91 Aligned_cols=40 Identities=25% Similarity=0.223 Sum_probs=28.5
Q ss_pred EEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCC
Q 041190 159 VIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFD 200 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 200 (261)
++.|+|++|+||||+++.+..... ..-...+|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA--TKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH--hcCCEEEEEECCcchH
Confidence 367999999999999999987632 2223566777665443
No 164
>PRK09354 recA recombinase A; Provisional
Probab=97.05 E-value=0.0025 Score=55.82 Aligned_cols=99 Identities=18% Similarity=0.060 Sum_probs=63.1
Q ss_pred HHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcC----
Q 041190 139 KEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAG---- 214 (261)
Q Consensus 139 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~---- 214 (261)
...|-.+|... +-+.-+++-|+|++|+|||||+-+++... ...-...+|+...+.++.. .++.++.
T Consensus 45 i~~LD~~LG~G---Gip~G~IteI~G~~GsGKTtLal~~~~~~--~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~ 114 (349)
T PRK09354 45 SLALDIALGIG---GLPRGRIVEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDN 114 (349)
T ss_pred cHHHHHHhcCC---CCcCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchHHH-----HHHHcCCCHHH
Confidence 34455556412 34567899999999999999999887652 2233456788888777653 2344431
Q ss_pred --CCCCCCHHHHHHHHHHHhC-CCeEEEEEeCCCCC
Q 041190 215 --SADVNDLNLLQLQLENQLK-NKKFLLVLDDMWSE 247 (261)
Q Consensus 215 --~~~~~~~~~~~~~l~~~l~-~kr~LiVlDdvw~~ 247 (261)
-..+...++....+...++ ++--|||+|.|-..
T Consensus 115 lli~qp~~~Eq~l~i~~~li~s~~~~lIVIDSvaaL 150 (349)
T PRK09354 115 LLVSQPDTGEQALEIADTLVRSGAVDLIVVDSVAAL 150 (349)
T ss_pred eEEecCCCHHHHHHHHHHHhhcCCCCEEEEeChhhh
Confidence 1123345555555555553 56779999998755
No 165
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.05 E-value=0.0056 Score=57.35 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=38.3
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+..+..|..++..+. -.+.+-++|+.|+||||+|+.+.+.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~ 61 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARC 61 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999996532 3457889999999999999998776
No 166
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.05 E-value=0.0013 Score=63.73 Aligned_cols=53 Identities=26% Similarity=0.164 Sum_probs=38.1
Q ss_pred CCCccccccchHHHHHHHhhCCCC-------CCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 128 DEEEVYGREKDKEVIVGLLLGDDL-------NSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.-.++.|.+..++.|.+++...-. -+-...+-+.++|++|+|||+||+.+.+.
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 334588999999998887642100 01123456889999999999999999886
No 167
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.04 E-value=0.003 Score=54.84 Aligned_cols=103 Identities=17% Similarity=0.117 Sum_probs=62.8
Q ss_pred HHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcccccc----ccceeEEEeeCCCCCHHHHHHHHHHHhcCC
Q 041190 140 EVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKK----YFSFRACAYVSEDFDAVGVTKVILQAAAGS 215 (261)
Q Consensus 140 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~ 215 (261)
..|-++|.. +-+.-+++-|+|++|+|||+|+.+++-...... .=...+|+...++|+..++.. +++.++..
T Consensus 83 ~~LD~lLgG----Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d 157 (313)
T TIGR02238 83 QALDGILGG----GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVD 157 (313)
T ss_pred HHHHHHhCC----CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 445555543 234568999999999999999988763322211 113578999999888888654 55655511
Q ss_pred C----------CCCCHHHH---HHHHHHHh-CCCeEEEEEeCCCCC
Q 041190 216 A----------DVNDLNLL---QLQLENQL-KNKKFLLVLDDMWSE 247 (261)
Q Consensus 216 ~----------~~~~~~~~---~~~l~~~l-~~kr~LiVlDdvw~~ 247 (261)
. ...+.+++ ...+...+ .++--|||+|.+-..
T Consensus 158 ~~~~l~~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal 203 (313)
T TIGR02238 158 PDAVLDNILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMAL 203 (313)
T ss_pred hHHhcCcEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcchHh
Confidence 1 11223333 33343334 345668999998643
No 168
>PTZ00301 uridine kinase; Provisional
Probab=97.04 E-value=0.00078 Score=55.03 Aligned_cols=24 Identities=33% Similarity=0.618 Sum_probs=21.1
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+|+|.|.+|+||||||+.+.+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHH
Confidence 479999999999999999887654
No 169
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.002 Score=60.47 Aligned_cols=75 Identities=21% Similarity=0.201 Sum_probs=48.5
Q ss_pred CceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhC
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDF--DAVGVTKVILQAAAGSADVNDLNLLQLQLENQLK 233 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~--~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 233 (261)
...-|.+.|+.|+|||+||+.+++... +++.-....++++.-. ....+.+.+ ...+.+++.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l----------------~~vfse~~~ 492 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFL----------------NNVFSEALW 492 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHH----------------HHHHHHHHh
Confidence 345688999999999999999998743 2222223455555421 223332222 223456677
Q ss_pred CCeEEEEEeCCCCC
Q 041190 234 NKKFLLVLDDMWSE 247 (261)
Q Consensus 234 ~kr~LiVlDdvw~~ 247 (261)
....+|||||+...
T Consensus 493 ~~PSiIvLDdld~l 506 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCL 506 (952)
T ss_pred hCCcEEEEcchhhh
Confidence 88999999999654
No 170
>PRK09183 transposase/IS protein; Provisional
Probab=97.02 E-value=0.0021 Score=54.31 Aligned_cols=23 Identities=35% Similarity=0.405 Sum_probs=20.2
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+.|+|++|+|||+||..+.+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 45779999999999999999765
No 171
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.01 E-value=0.0047 Score=53.74 Aligned_cols=103 Identities=16% Similarity=0.028 Sum_probs=60.7
Q ss_pred HHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcccccc----ccceeEEEeeCCCCCHHHHHHHHHHHhcCC
Q 041190 140 EVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKK----YFSFRACAYVSEDFDAVGVTKVILQAAAGS 215 (261)
Q Consensus 140 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~ 215 (261)
..|-.+|.. +-+.-.++.|+|.+|+|||+|+..++....... .-...+|+...+.++..++ ..+.+.++..
T Consensus 83 ~~lD~ll~g----Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~ 157 (316)
T TIGR02239 83 KELDKLLGG----GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLN 157 (316)
T ss_pred HHHHHHhcC----CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCC
Confidence 445555543 234678999999999999999998875321111 1124689988887777664 3344444411
Q ss_pred C----------CCCCHHHH---HHHHHHHh-CCCeEEEEEeCCCCC
Q 041190 216 A----------DVNDLNLL---QLQLENQL-KNKKFLLVLDDMWSE 247 (261)
Q Consensus 216 ~----------~~~~~~~~---~~~l~~~l-~~kr~LiVlDdvw~~ 247 (261)
. ...+.+++ ...+...+ ..+--|||+|.+-..
T Consensus 158 ~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al 203 (316)
T TIGR02239 158 PEDVLDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSATAL 203 (316)
T ss_pred hHHhhccEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECcHHH
Confidence 0 11223333 33333334 345679999998653
No 172
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.99 E-value=0.0069 Score=50.44 Aligned_cols=98 Identities=18% Similarity=0.221 Sum_probs=57.5
Q ss_pred HHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhc-C----
Q 041190 140 EVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAA-G---- 214 (261)
Q Consensus 140 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~-~---- 214 (261)
..|-++|.. +-+.-+++.|.|.+|+|||+++.++.... . ..-...+|++... +...+.+.+. +++ .
T Consensus 8 ~~LD~~l~G----G~~~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~~~-~~g~~~~~~ 78 (237)
T TIGR03877 8 PGMDEILHG----GIPERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRNMA-QFGWDVRKY 78 (237)
T ss_pred HhHHHHhcC----CCcCCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHHHH-HhCCCHHHH
Confidence 344455543 34567899999999999999998764321 1 1233567777665 4444444322 221 0
Q ss_pred ---------C-----------------CCCCCHHHHHHHHHHHhCC-CeEEEEEeCCCC
Q 041190 215 ---------S-----------------ADVNDLNLLQLQLENQLKN-KKFLLVLDDMWS 246 (261)
Q Consensus 215 ---------~-----------------~~~~~~~~~~~~l~~~l~~-kr~LiVlDdvw~ 246 (261)
. .+..+..++...+++.+.. +.-++|+|.+-.
T Consensus 79 ~~~g~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~ 137 (237)
T TIGR03877 79 EEEGKFAIVDAFTGGIGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTT 137 (237)
T ss_pred hhcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhH
Confidence 0 0224556666667666532 344799999765
No 173
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.98 E-value=0.00073 Score=55.03 Aligned_cols=26 Identities=38% Similarity=0.569 Sum_probs=23.1
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+...+|+|+|++|+|||||++.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999999999875
No 174
>PRK08233 hypothetical protein; Provisional
Probab=96.98 E-value=0.00066 Score=53.77 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.3
Q ss_pred ceEEeEeecCCCChHHHHHHHhhcc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
..+|+|.|.+|+||||||+.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999998763
No 175
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0029 Score=59.95 Aligned_cols=101 Identities=20% Similarity=0.100 Sum_probs=61.3
Q ss_pred CccccccchHHHHHHHhhCCC--C----CCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHH
Q 041190 130 EEVYGREKDKEVIVGLLLGDD--L----NSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVG 203 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~--~----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~ 203 (261)
.++-|.++-+.+|.+-+.-.- . .+-.+.+=|-.||++|+|||-|||.|... .. ..|++|-++
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATE--cs-----L~FlSVKGP----- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATE--CS-----LNFLSVKGP----- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhh--ce-----eeEEeecCH-----
Confidence 457788888888887553310 0 01223455788999999999999999886 22 235666553
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCh
Q 041190 204 VTKVILQAAAGSADVNDLNLLQLQLENQLKNKKFLLVLDDMWSENY 249 (261)
Q Consensus 204 i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~~~ 249 (261)
++++..- +.+.+-+...+.+.=..+.|+|+||++.+..|
T Consensus 740 ---ELLNMYV----GqSE~NVR~VFerAR~A~PCVIFFDELDSlAP 778 (953)
T KOG0736|consen 740 ---ELLNMYV----GQSEENVREVFERARSAAPCVIFFDELDSLAP 778 (953)
T ss_pred ---HHHHHHh----cchHHHHHHHHHHhhccCCeEEEeccccccCc
Confidence 2222211 12222222222333346889999999998765
No 176
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.97 E-value=0.0033 Score=49.55 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=19.3
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
++.++|++|+||||++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999888765
No 177
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.0021 Score=52.38 Aligned_cols=27 Identities=33% Similarity=0.398 Sum_probs=24.1
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.++.+|+|.|.+|+||||+|+.++...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998873
No 178
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.96 E-value=0.00076 Score=57.38 Aligned_cols=96 Identities=19% Similarity=0.229 Sum_probs=49.9
Q ss_pred HHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCCCCCC
Q 041190 140 EVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGSADVN 219 (261)
Q Consensus 140 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~ 219 (261)
..+++.+... -+-+.++|++|+|||++++.......- ..| ...-++.+..-+... +..+++.-.......
T Consensus 23 ~~ll~~l~~~-------~~pvLl~G~~GtGKT~li~~~l~~l~~-~~~-~~~~~~~s~~Tts~~-~q~~ie~~l~k~~~~ 92 (272)
T PF12775_consen 23 SYLLDLLLSN-------GRPVLLVGPSGTGKTSLIQNFLSSLDS-DKY-LVITINFSAQTTSNQ-LQKIIESKLEKRRGR 92 (272)
T ss_dssp HHHHHHHHHC-------TEEEEEESSTTSSHHHHHHHHHHCSTT-CCE-EEEEEES-TTHHHHH-HHHCCCTTECECTTE
T ss_pred HHHHHHHHHc-------CCcEEEECCCCCchhHHHHhhhccCCc-ccc-ceeEeeccCCCCHHH-HHHHHhhcEEcCCCC
Confidence 4455555542 256799999999999999998865221 112 133455555333332 222222111100000
Q ss_pred CHHHHHHHHHHHhCCCeEEEEEeCCCCCChhhHH
Q 041190 220 DLNLLQLQLENQLKNKKFLLVLDDMWSENYDVWT 253 (261)
Q Consensus 220 ~~~~~~~~l~~~l~~kr~LiVlDdvw~~~~~~w~ 253 (261)
.. .--.+|+.++++||+--..++.|.
T Consensus 93 ~~--------gP~~~k~lv~fiDDlN~p~~d~yg 118 (272)
T PF12775_consen 93 VY--------GPPGGKKLVLFIDDLNMPQPDKYG 118 (272)
T ss_dssp EE--------EEESSSEEEEEEETTT-S---TTS
T ss_pred CC--------CCCCCcEEEEEecccCCCCCCCCC
Confidence 00 001478999999999888776664
No 179
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.95 E-value=0.00083 Score=51.84 Aligned_cols=25 Identities=40% Similarity=0.391 Sum_probs=21.9
Q ss_pred ceEEeEeecCCCChHHHHHHHhhcc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
..-|+|.|++|+||||+++.+.+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3568999999999999999998763
No 180
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.95 E-value=0.00058 Score=63.13 Aligned_cols=50 Identities=26% Similarity=0.263 Sum_probs=39.9
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 131 EVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+++|.++.++.|++.|.......+..-+++.++|++|+||||||+.+.+-
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 58999999999999984321112334579999999999999999999875
No 181
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.94 E-value=0.00076 Score=51.18 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=19.9
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+|.++|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999865
No 182
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.94 E-value=0.0047 Score=50.87 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=20.0
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+|+|.|.+|+||||+|+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999865
No 183
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0015 Score=60.23 Aligned_cols=73 Identities=19% Similarity=0.153 Sum_probs=46.3
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCe
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGSADVNDLNLLQLQLENQLKNKK 236 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr 236 (261)
..=|.+||++|+|||-||+.|.|.. .-+| ++|-++ +++.. .-+.+...+...+...-..-.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa--g~NF-----isVKGP----ELlNk--------YVGESErAVR~vFqRAR~saP 605 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA--GANF-----ISVKGP----ELLNK--------YVGESERAVRQVFQRARASAP 605 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc--cCce-----EeecCH----HHHHH--------HhhhHHHHHHHHHHHhhcCCC
Confidence 4457889999999999999999973 3345 444442 12211 112233333334444445778
Q ss_pred EEEEEeCCCCCC
Q 041190 237 FLLVLDDMWSEN 248 (261)
Q Consensus 237 ~LiVlDdvw~~~ 248 (261)
|+|+||++...-
T Consensus 606 CVIFFDEiDaL~ 617 (802)
T KOG0733|consen 606 CVIFFDEIDALV 617 (802)
T ss_pred eEEEecchhhcC
Confidence 999999997654
No 184
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.93 E-value=0.0044 Score=54.39 Aligned_cols=102 Identities=18% Similarity=0.089 Sum_probs=62.1
Q ss_pred HHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccc---cc-cceeEEEeeCCCCCHHHHHHHHHHHhcCC
Q 041190 140 EVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVK---KY-FSFRACAYVSEDFDAVGVTKVILQAAAGS 215 (261)
Q Consensus 140 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~-f~~~~wv~v~~~~~~~~i~~~i~~~l~~~ 215 (261)
..|-++|.. +-+.-++.-|+|++|+|||+|+.+++-..... .. -...+|+...++|+..++.. +.+.++..
T Consensus 113 ~~LD~lLgG----Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 113 QALDELLGG----GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred HhHHhhcCC----CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 344455543 23456889999999999999998886332221 11 13568999999999888654 45555511
Q ss_pred C----------CCCCHHHH---HHHHHHHh-CCCeEEEEEeCCCC
Q 041190 216 A----------DVNDLNLL---QLQLENQL-KNKKFLLVLDDMWS 246 (261)
Q Consensus 216 ~----------~~~~~~~~---~~~l~~~l-~~kr~LiVlDdvw~ 246 (261)
. ...+.+++ ...+...+ ..+--|||+|.+-.
T Consensus 188 ~~~~l~~I~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSita 232 (344)
T PLN03187 188 ADAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIA 232 (344)
T ss_pred hhhhcCeEEEecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 1 12233333 23333333 34456899999864
No 185
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.91 E-value=0.0024 Score=58.27 Aligned_cols=80 Identities=16% Similarity=0.114 Sum_probs=46.0
Q ss_pred CceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhCCC
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGSADVNDLNLLQLQLENQLKNK 235 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k 235 (261)
....+.|+|..|+|||+|++.+.+.......-...++++ ..++...+...+... ......+++.++ +
T Consensus 140 ~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~------~~~~~~~~~~~~-~ 206 (450)
T PRK14087 140 SYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKT------HKEIEQFKNEIC-Q 206 (450)
T ss_pred ccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHh------hhHHHHHHHHhc-c
Confidence 345689999999999999999988522111111123333 345566666555421 011223444444 3
Q ss_pred eEEEEEeCCCCCC
Q 041190 236 KFLLVLDDMWSEN 248 (261)
Q Consensus 236 r~LiVlDdvw~~~ 248 (261)
.-+|+|||+-...
T Consensus 207 ~dvLiIDDiq~l~ 219 (450)
T PRK14087 207 NDVLIIDDVQFLS 219 (450)
T ss_pred CCEEEEecccccc
Confidence 3478889996653
No 186
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.91 E-value=0.0081 Score=56.96 Aligned_cols=47 Identities=23% Similarity=0.314 Sum_probs=37.6
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
..++|.+..+..|..++.... -..-+-++|+.|+||||+|+.+.+..
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHh
Confidence 458899989999999886532 23467889999999999999997763
No 187
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.90 E-value=0.0033 Score=54.91 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.7
Q ss_pred eEEeEeecCCCChHHHHHHHhhcc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.-+.++|.+|+|||+||..+.+..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l 207 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL 207 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH
Confidence 569999999999999999998873
No 188
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.89 E-value=0.0012 Score=51.06 Aligned_cols=42 Identities=31% Similarity=0.471 Sum_probs=31.2
Q ss_pred EEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAA 213 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~ 213 (261)
+|.|.|++|+||||+|+.+.++.... | .+...++++|.++.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----------vsaG~iFR~~A~e~g 43 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----------VSAGTIFREMARERG 43 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----------eeccHHHHHHHHHcC
Confidence 68999999999999999998874432 1 244566677766655
No 189
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.89 E-value=0.012 Score=51.61 Aligned_cols=103 Identities=14% Similarity=0.052 Sum_probs=63.1
Q ss_pred HHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccc----cceeEEEeeCCCCCHHHHHHHHHHHhcC
Q 041190 139 KEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKY----FSFRACAYVSEDFDAVGVTKVILQAAAG 214 (261)
Q Consensus 139 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~i~~~i~~~l~~ 214 (261)
...|-++|.. +-+.-.++-|+|.+|+|||+|+..++-....... -...+|+...++|...++. +|++.++.
T Consensus 109 ~~~LD~lL~G----G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 109 SRELDKILEG----GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred CHHHHHhhcC----CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 3445555543 2345678999999999999999888754222111 1257899999988887764 45555541
Q ss_pred CC----------CCCCHHHHHHHH---HHHh-CCCeEEEEEeCCCC
Q 041190 215 SA----------DVNDLNLLQLQL---ENQL-KNKKFLLVLDDMWS 246 (261)
Q Consensus 215 ~~----------~~~~~~~~~~~l---~~~l-~~kr~LiVlDdvw~ 246 (261)
.. ...+.+.+...+ ...+ ..+--|||+|.+-.
T Consensus 184 ~~~~~l~~i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~a 229 (342)
T PLN03186 184 NGADVLENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSATA 229 (342)
T ss_pred ChhhhccceEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcHH
Confidence 11 112333333222 2223 45667999999865
No 190
>PRK06762 hypothetical protein; Provisional
Probab=96.87 E-value=0.00089 Score=52.40 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=21.3
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+|.|+|++|+||||+|+.+.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999876
No 191
>PRK00625 shikimate kinase; Provisional
Probab=96.86 E-value=0.0027 Score=50.21 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.9
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.|.++|++|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999776
No 192
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.86 E-value=0.0088 Score=57.22 Aligned_cols=46 Identities=17% Similarity=0.344 Sum_probs=37.0
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+..+..|...+.... -.+.+-++|+.|+||||+|+.+.+.
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~ 63 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANA 63 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 358899999999999986532 3456678999999999999988664
No 193
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.85 E-value=0.0035 Score=55.95 Aligned_cols=66 Identities=21% Similarity=0.230 Sum_probs=38.9
Q ss_pred CCCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCC
Q 041190 128 DEEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSE 197 (261)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 197 (261)
.++.++|-......-...-.... .+.....+.|||..|.|||.|++.+.+. ...+......++++.
T Consensus 86 FdnFv~g~~N~~A~aa~~~va~~--~g~~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~s 151 (408)
T COG0593 86 FDNFVVGPSNRLAYAAAKAVAEN--PGGAYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLTS 151 (408)
T ss_pred hhheeeCCchHHHHHHHHHHHhc--cCCcCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEeccH
Confidence 44556665443332222222211 2235789999999999999999999997 434443333344433
No 194
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=96.85 E-value=0.0022 Score=54.52 Aligned_cols=82 Identities=12% Similarity=0.120 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc-cccChhHHHHHHHHHHHHhhhHhHHHHHHHH
Q 041190 11 VTVEMLVEKLALEVIQLFARQEQIEADLKKWEELLVIIKVVLDDAEEK-QITKPLTKKWLGKLQNLAYDAEDMLDEFATE 89 (261)
Q Consensus 11 ~~v~~l~~~l~~~~~~~~~~~~~v~~~i~~L~~~l~~i~~~l~~a~~~-~~~~~~~~~wl~~lr~~ayd~ed~ld~~~~~ 89 (261)
|.+..++..|.++.......+.-++++++-++.+|+.+|.||+..... +..-...+.++.++.+.||++|.++|-|..+
T Consensus 296 GyVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi~k 375 (402)
T PF12061_consen 296 GYVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACISK 375 (402)
T ss_pred cHHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhhcC
Confidence 467778888888877767778889999999999999999999997544 3333448899999999999999999998665
Q ss_pred HHH
Q 041190 90 AFR 92 (261)
Q Consensus 90 ~~~ 92 (261)
...
T Consensus 376 ~~P 378 (402)
T PF12061_consen 376 SVP 378 (402)
T ss_pred CCc
Confidence 433
No 195
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.83 E-value=0.0055 Score=57.48 Aligned_cols=46 Identities=22% Similarity=0.271 Sum_probs=37.2
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+..++.|.+.+.... -.+.+-++|+.|+||||+|+.+.+.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAka 61 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKA 61 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999987532 2456678999999999999888654
No 196
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.82 E-value=0.0049 Score=54.36 Aligned_cols=48 Identities=21% Similarity=0.342 Sum_probs=38.7
Q ss_pred CCCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 128 DEEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.-..++|.+.....+...+... .-...+-++|+.|+||||+|..+.+.
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~g-----rl~ha~L~~G~~G~GKttlA~~lA~~ 68 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREG-----KLHHALLFEGPEGIGKATLAFHLANH 68 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcC-----CCCeeEeeECCCCCCHHHHHHHHHHH
Confidence 3456899999999999988653 23457889999999999999887665
No 197
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.82 E-value=0.01 Score=54.28 Aligned_cols=46 Identities=26% Similarity=0.361 Sum_probs=37.1
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+..++.|.+++..+. -.+.+-++|++|+||||+|+.+.+.
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~ 62 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKA 62 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999886532 2356778999999999999888654
No 198
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.82 E-value=0.0038 Score=53.47 Aligned_cols=22 Identities=36% Similarity=0.363 Sum_probs=18.7
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-+.++|++|+||||+|+.+.+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~ 81 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQI 81 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999776554
No 199
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.82 E-value=0.0082 Score=51.46 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.0
Q ss_pred CCceEEeEeecCCCChHHHHHHHh
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVF 178 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~ 178 (261)
....+|+|.|.+|+||||+|+.+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456899999999999999998763
No 200
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0043 Score=53.26 Aligned_cols=82 Identities=11% Similarity=0.185 Sum_probs=49.6
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccc--cccceeEEEeeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhCC
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVK--KYFSFRACAYVSEDFDAVGVTKVILQAAAGSADVNDLNLLQLQLENQLKN 234 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 234 (261)
-++|-++|++|+|||+|.+.++++..++ +.|....-+.+.. ..++.+=..+ .+.-...+..+|.+.+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE-----SgKlV~kmF~kI~ELv~d 247 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE-----SGKLVAKMFQKIQELVED 247 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh-----hhhHHHHHHHHHHHHHhC
Confidence 4689999999999999999999987654 3343333344322 1222221111 122344555666677765
Q ss_pred Ce--EEEEEeCCCCC
Q 041190 235 KK--FLLVLDDMWSE 247 (261)
Q Consensus 235 kr--~LiVlDdvw~~ 247 (261)
+. +++.+|+|-+.
T Consensus 248 ~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 248 RGNLVFVLIDEVESL 262 (423)
T ss_pred CCcEEEEEeHHHHHH
Confidence 54 56678888654
No 201
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.0054 Score=54.36 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=21.7
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+-.++.++|++|+||||++..+...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999888765
No 202
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.79 E-value=0.017 Score=53.61 Aligned_cols=46 Identities=22% Similarity=0.272 Sum_probs=36.6
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+..++.|...+... .-.+.+-++|+.|+||||+|+.+.+.
T Consensus 14 deiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~ 59 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARA 59 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHH
Confidence 45899998899999988643 23456689999999999999977654
No 203
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.01 Score=52.86 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.5
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+.++|+++|++|+||||++..+...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Confidence 4579999999999999999888653
No 204
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.77 E-value=0.0099 Score=49.29 Aligned_cols=98 Identities=20% Similarity=0.129 Sum_probs=59.1
Q ss_pred HHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCC---
Q 041190 139 KEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGS--- 215 (261)
Q Consensus 139 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~--- 215 (261)
...|-++|.. +-+.-+++.|+|.+|+|||+|+.++.... .+ .=....|++..++ ...+.+.+ .+++-.
T Consensus 11 i~~LD~~l~g----G~~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~ 81 (234)
T PRK06067 11 NEELDRKLGG----GIPFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISD 81 (234)
T ss_pred CHHHHHhhCC----CCcCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhH
Confidence 3445555533 34567899999999999999999985431 11 2234678887664 34444442 223200
Q ss_pred ------------------CCCCCHHHHHHHHHHHhCC-CeEEEEEeCCC
Q 041190 216 ------------------ADVNDLNLLQLQLENQLKN-KKFLLVLDDMW 245 (261)
Q Consensus 216 ------------------~~~~~~~~~~~~l~~~l~~-kr~LiVlDdvw 245 (261)
....+.+.+...+...+.. +.-++|+|.+-
T Consensus 82 ~~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 82 FFLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred HHhCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335666667666653 55689999986
No 205
>PRK06547 hypothetical protein; Provisional
Probab=96.77 E-value=0.0014 Score=51.83 Aligned_cols=27 Identities=37% Similarity=0.469 Sum_probs=23.7
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
....+|.|.|++|+||||+|+.+.+..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999998763
No 206
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.76 E-value=0.0051 Score=50.40 Aligned_cols=83 Identities=22% Similarity=0.257 Sum_probs=51.1
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCC-CHHHHHHHHHHHhc-C-------CCCCCCH-------
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDF-DAVGVTKVILQAAA-G-------SADVNDL------- 221 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~i~~~i~~~l~-~-------~~~~~~~------- 221 (261)
.-++|.|.+|+|||+|++.+.++.+ -+..+++.+++.. ...++.+++...-. . ..+....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 4689999999999999999988742 2234777787653 34555555533211 1 1111111
Q ss_pred --HHHHHHHHHHhCCCeEEEEEeCCCC
Q 041190 222 --NLLQLQLENQLKNKKFLLVLDDMWS 246 (261)
Q Consensus 222 --~~~~~~l~~~l~~kr~LiVlDdvw~ 246 (261)
-.+...+++ +++.+|+++||+-.
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsltr 116 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETHHH
T ss_pred cchhhhHHHhh--cCCceeehhhhhHH
Confidence 112333444 79999999999943
No 207
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.76 E-value=0.0012 Score=43.89 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=19.9
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
++.|.|.+|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999876
No 208
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.76 E-value=0.00091 Score=48.49 Aligned_cols=21 Identities=48% Similarity=0.588 Sum_probs=18.9
Q ss_pred EeEeecCCCChHHHHHHHhhc
Q 041190 160 IPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 160 i~I~G~~GiGKTtLa~~v~~~ 180 (261)
|.|+|++|+|||+||+.+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999998776
No 209
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.74 E-value=0.015 Score=55.10 Aligned_cols=46 Identities=24% Similarity=0.276 Sum_probs=37.0
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+..++.|..++..+. -.+.+-++|+.|+||||+|+.+...
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~ 62 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKT 62 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999986532 3456889999999999999877654
No 210
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.73 E-value=0.0026 Score=51.43 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.3
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++.|+|++|+||||+++.+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999987765
No 211
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.70 E-value=0.0013 Score=52.28 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.2
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+.++|.|.|++|+||||+++.+.+.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999765
No 212
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.0056 Score=54.92 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=21.5
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+..++.++|++|+||||++..+...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999888754
No 213
>PRK14974 cell division protein FtsY; Provisional
Probab=96.70 E-value=0.01 Score=51.98 Aligned_cols=25 Identities=32% Similarity=0.272 Sum_probs=21.2
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+..++.++|++|+||||++..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~ 163 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYY 163 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999977777654
No 214
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.69 E-value=0.0066 Score=47.79 Aligned_cols=45 Identities=22% Similarity=0.215 Sum_probs=32.2
Q ss_pred cccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 132 VYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 132 ~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
++|....+..+++.+..-.. ....|.|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 46777777778777765321 2255679999999999999999985
No 215
>PRK04328 hypothetical protein; Provisional
Probab=96.68 E-value=0.01 Score=49.77 Aligned_cols=52 Identities=19% Similarity=0.242 Sum_probs=34.2
Q ss_pred HHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCC
Q 041190 141 VIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSED 198 (261)
Q Consensus 141 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~ 198 (261)
.|-++|.. +-+.-+++.|.|.+|+|||+|+.+..... .+ .-...+|++..++
T Consensus 11 ~LD~lL~G----Gip~gs~ili~G~pGsGKT~l~~~fl~~~-~~-~ge~~lyis~ee~ 62 (249)
T PRK04328 11 GMDEILYG----GIPERNVVLLSGGPGTGKSIFSQQFLWNG-LQ-MGEPGVYVALEEH 62 (249)
T ss_pred hHHHHhcC----CCcCCcEEEEEcCCCCCHHHHHHHHHHHH-Hh-cCCcEEEEEeeCC
Confidence 44455533 23456899999999999999998865431 21 2234677877663
No 216
>PRK05439 pantothenate kinase; Provisional
Probab=96.67 E-value=0.015 Score=50.26 Aligned_cols=27 Identities=30% Similarity=0.225 Sum_probs=23.3
Q ss_pred CCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 154 GPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 154 ~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
....-+|+|.|.+|+||||+|+.+..-
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~ 109 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQAL 109 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 446789999999999999999988663
No 217
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.67 E-value=0.0017 Score=50.28 Aligned_cols=25 Identities=44% Similarity=0.430 Sum_probs=22.1
Q ss_pred ceEEeEeecCCCChHHHHHHHhhcc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
..+|.++|.+|+||||||+.+.+..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998873
No 218
>PRK04296 thymidine kinase; Provisional
Probab=96.66 E-value=0.0021 Score=51.71 Aligned_cols=85 Identities=13% Similarity=-0.124 Sum_probs=44.8
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHhCC
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGSA---DVNDLNLLQLQLENQLKN 234 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~~---~~~~~~~~~~~l~~~l~~ 234 (261)
.+..|+|+.|+||||++......... +-.....+. +.++.......+..+++... ......++...+++ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~--~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEE--RGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH--cCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 47788999999999999877765321 211222221 11121111223444444111 12234455555555 334
Q ss_pred CeEEEEEeCCCCC
Q 041190 235 KKFLLVLDDMWSE 247 (261)
Q Consensus 235 kr~LiVlDdvw~~ 247 (261)
+.-+||+|++--.
T Consensus 78 ~~dvviIDEaq~l 90 (190)
T PRK04296 78 KIDCVLIDEAQFL 90 (190)
T ss_pred CCCEEEEEccccC
Confidence 4458999999654
No 219
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.66 E-value=0.0012 Score=53.28 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=19.9
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+|+|.|++|+|||||++.+..-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999765
No 220
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.65 E-value=0.002 Score=53.37 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=23.7
Q ss_pred CCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 154 GPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 154 ~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+..+++|.|++|+|||||++.+..-
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999988765
No 221
>PRK03839 putative kinase; Provisional
Probab=96.65 E-value=0.0014 Score=52.03 Aligned_cols=23 Identities=43% Similarity=0.719 Sum_probs=20.7
Q ss_pred EEeEeecCCCChHHHHHHHhhcc
Q 041190 159 VIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.|.|.|++|+||||+++.+.+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998874
No 222
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.65 E-value=0.0016 Score=51.03 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=22.8
Q ss_pred CceEEeEeecCCCChHHHHHHHhhcc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
+...|.++|++|+||||+|+.+.+..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998863
No 223
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.64 E-value=0.013 Score=49.20 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=23.5
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
++..+|.++||.|+||||..|.++.+.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 456788899999999999999998873
No 224
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.64 E-value=0.009 Score=52.97 Aligned_cols=25 Identities=44% Similarity=0.527 Sum_probs=20.4
Q ss_pred CceEEeEeecCCCChHH-HHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTT-LAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTt-La~~v~~~ 180 (261)
+-+++.++|+.|+|||| ||+.-..-
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~ 227 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY 227 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999998 77665543
No 225
>PRK04040 adenylate kinase; Provisional
Probab=96.62 E-value=0.0018 Score=51.99 Aligned_cols=24 Identities=33% Similarity=0.619 Sum_probs=21.7
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+|.|+|++|+||||+++.+.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999999876
No 226
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.62 E-value=0.0083 Score=54.10 Aligned_cols=87 Identities=16% Similarity=0.158 Sum_probs=51.3
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCC-HHHHHHHHHHHhc-C-------CCCCCCHHH----
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFD-AVGVTKVILQAAA-G-------SADVNDLNL---- 223 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~i~~~i~~~l~-~-------~~~~~~~~~---- 223 (261)
-..++|.|..|+|||||++.+.+.. ..+..+.+-+++... ..+++.+++..-+ . ..+......
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 3468999999999999999998652 124555566766543 3445555443321 1 111111111
Q ss_pred -HHHHHHHHh--CCCeEEEEEeCCCCC
Q 041190 224 -LQLQLENQL--KNKKFLLVLDDMWSE 247 (261)
Q Consensus 224 -~~~~l~~~l--~~kr~LiVlDdvw~~ 247 (261)
..-.+-+++ +++++|+++||+-.-
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 111233333 689999999999553
No 227
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.62 E-value=0.0098 Score=51.59 Aligned_cols=100 Identities=17% Similarity=0.050 Sum_probs=59.1
Q ss_pred HHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCC---
Q 041190 139 KEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGS--- 215 (261)
Q Consensus 139 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~--- 215 (261)
...|-..|... +-+.-+++-|+|+.|+||||||-.+... .+..-...+|+...+.++... +..++-.
T Consensus 38 ~~~LD~aLg~G---G~p~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~r 107 (322)
T PF00154_consen 38 SPALDYALGIG---GLPRGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPEY-----AESLGVDLDR 107 (322)
T ss_dssp -HHHHHHTSSS---SEETTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HHH-----HHHTT--GGG
T ss_pred CcccchhhccC---ccccCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhhH-----HHhcCccccc
Confidence 34444555422 3455679999999999999999988876 333334578999988777644 3444411
Q ss_pred ---CCCCCHHHHHHHHHHHhC-CCeEEEEEeCCCCCC
Q 041190 216 ---ADVNDLNLLQLQLENQLK-NKKFLLVLDDMWSEN 248 (261)
Q Consensus 216 ---~~~~~~~~~~~~l~~~l~-~kr~LiVlDdvw~~~ 248 (261)
..+...++..+.+..+++ +.--+||+|.|-...
T Consensus 108 llv~~P~~~E~al~~~e~lirsg~~~lVVvDSv~al~ 144 (322)
T PF00154_consen 108 LLVVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAALV 144 (322)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-B
T ss_pred eEEecCCcHHHHHHHHHHHhhcccccEEEEecCcccC
Confidence 123344555555555553 455799999987764
No 228
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.61 E-value=0.017 Score=54.21 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.7
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...+.|+|..|+|||.|++.+++.
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~ 337 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHY 337 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999999999987
No 229
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.60 E-value=0.014 Score=48.94 Aligned_cols=90 Identities=18% Similarity=0.152 Sum_probs=50.3
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccc-c--ccceeEEEeeCCCCCHHHHHHHHHHHhcCC-----CCCCC--HHHHH-
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVK-K--YFSFRACAYVSEDFDAVGVTKVILQAAAGS-----ADVND--LNLLQ- 225 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~--~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~-----~~~~~--~~~~~- 225 (261)
-.+++++|.+|+||||+++.+..=.+-. . .|+-.-....+ .....+-..++++..+.. ..++. -.+.+
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR 117 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQR 117 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh
Confidence 4589999999999999999998642211 0 12221111112 112333455566655511 11111 12222
Q ss_pred HHHHHHhCCCeEEEEEeCCCCC
Q 041190 226 LQLENQLKNKKFLLVLDDMWSE 247 (261)
Q Consensus 226 ~~l~~~l~~kr~LiVlDdvw~~ 247 (261)
-.|...|.-+.-|||+|+--+.
T Consensus 118 i~IARALal~P~liV~DEpvSa 139 (268)
T COG4608 118 IGIARALALNPKLIVADEPVSA 139 (268)
T ss_pred HHHHHHHhhCCcEEEecCchhh
Confidence 2356677888889999987664
No 230
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.59 E-value=0.017 Score=50.03 Aligned_cols=46 Identities=20% Similarity=0.155 Sum_probs=34.0
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 131 EVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++|-+.....+..+..... .....+-++|++|+||||+|..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~ 47 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKE 47 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHH
Confidence 35666777788888877432 12335999999999999999888765
No 231
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.59 E-value=0.01 Score=57.69 Aligned_cols=51 Identities=22% Similarity=0.092 Sum_probs=35.5
Q ss_pred CccccccchHHHHHHHhhCCCC-------CCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDL-------NSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++.|.+..++.|.+.+...-. -+....+-+.++|++|+|||++|+.+.+.
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e 510 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE 510 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 4577888787777776542100 01123445788999999999999999987
No 232
>PTZ00035 Rad51 protein; Provisional
Probab=96.59 E-value=0.02 Score=50.24 Aligned_cols=103 Identities=14% Similarity=0.023 Sum_probs=60.8
Q ss_pred HHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccc---c-ccceeEEEeeCCCCCHHHHHHHHHHHhcC
Q 041190 139 KEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVK---K-YFSFRACAYVSEDFDAVGVTKVILQAAAG 214 (261)
Q Consensus 139 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~-~f~~~~wv~v~~~~~~~~i~~~i~~~l~~ 214 (261)
...|-++|.. +-+.-.++.|+|.+|+|||+|+..++-..... . .-...+|+...+.++..++ ..+.+.++.
T Consensus 104 ~~~LD~lLgG----Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 104 STQLDKLLGG----GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred cHHHHHHhCC----CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 3445555643 34567899999999999999999887542211 1 1123568888777777664 334454441
Q ss_pred CC----------CCCCHHHHHHH---HHHHh-CCCeEEEEEeCCCC
Q 041190 215 SA----------DVNDLNLLQLQ---LENQL-KNKKFLLVLDDMWS 246 (261)
Q Consensus 215 ~~----------~~~~~~~~~~~---l~~~l-~~kr~LiVlDdvw~ 246 (261)
.. ...+.+++... +...+ .++--|||+|.+..
T Consensus 179 ~~~~~l~nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 179 DPEDVLDNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred ChHhHhhceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 10 11233333333 23333 35667999999975
No 233
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.57 E-value=0.0054 Score=48.78 Aligned_cols=23 Identities=39% Similarity=0.430 Sum_probs=20.5
Q ss_pred EEeEeecCCCChHHHHHHHhhcc
Q 041190 159 VIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
-|.|.|++|+||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998873
No 234
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.57 E-value=0.015 Score=47.66 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.7
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999775
No 235
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.55 E-value=0.0034 Score=52.02 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.4
Q ss_pred EEeEeecCCCChHHHHHHHhhcc
Q 041190 159 VIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
-|.|.|++|+||||+|+.+.+..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999997763
No 236
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.54 E-value=0.019 Score=48.85 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=21.1
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+.+++.++|++|+||||++..+...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~ 95 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK 95 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999988777554
No 237
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.54 E-value=0.016 Score=52.45 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=47.2
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHh-----c--CCCCCCCHH-----HH
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAA-----A--GSADVNDLN-----LL 224 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l-----~--~~~~~~~~~-----~~ 224 (261)
-..++|+|.+|+|||||++.+....+ .....++..--...++.++....+... . .+.+..... ..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 35789999999999999998876422 222233332112234444444333322 2 122222111 11
Q ss_pred HHHHHHHh--CCCeEEEEEeCCCC
Q 041190 225 QLQLENQL--KNKKFLLVLDDMWS 246 (261)
Q Consensus 225 ~~~l~~~l--~~kr~LiVlDdvw~ 246 (261)
.-.+-+++ +++.+|+++||+-.
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHH
Confidence 12233333 58999999999854
No 238
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.54 E-value=0.0046 Score=54.86 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=36.5
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+..+..|.+.+.... -...+-++|+.|+||+|+|..+.+.
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~ 64 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARF 64 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999886532 3456889999999999999766543
No 239
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.53 E-value=0.012 Score=53.63 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=55.0
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCC-CHHHHHHHHHHHhc-C-------CCCCCCHH-----H
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDF-DAVGVTKVILQAAA-G-------SADVNDLN-----L 223 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~i~~~i~~~l~-~-------~~~~~~~~-----~ 223 (261)
.-++|.|.+|+|||||+..+.+..... +-++.+++-+.+.. ...+++.++...-. . ..+..... .
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 458999999999999999888774322 45677777777644 34555555544321 1 11111111 1
Q ss_pred HHHHHHHHh---CCCeEEEEEeCCCC
Q 041190 224 LQLQLENQL---KNKKFLLVLDDMWS 246 (261)
Q Consensus 224 ~~~~l~~~l---~~kr~LiVlDdvw~ 246 (261)
..-.+-+++ .++++|+++|++-.
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccchH
Confidence 223355555 38999999999954
No 240
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.53 E-value=0.021 Score=51.50 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=21.7
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
....+|.++|++|+||||++..+...
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999999988877543
No 241
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.50 E-value=0.015 Score=52.62 Aligned_cols=87 Identities=17% Similarity=0.175 Sum_probs=51.2
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCC-HHHHHHHHHHHhc--------CCCCCCCHHH----
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFD-AVGVTKVILQAAA--------GSADVNDLNL---- 223 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~i~~~i~~~l~--------~~~~~~~~~~---- 223 (261)
-..++|+|..|+|||||++.+.+..+ -+..+.+-+++... ..++..+.+..-+ ...+......
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 35789999999999999999987632 23445566666443 3344444433321 1112111111
Q ss_pred -HHHHHHHHh--CCCeEEEEEeCCCCC
Q 041190 224 -LQLQLENQL--KNKKFLLVLDDMWSE 247 (261)
Q Consensus 224 -~~~~l~~~l--~~kr~LiVlDdvw~~ 247 (261)
..-.+-+++ .++.+|+++||+-.-
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 112233444 589999999999553
No 242
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.49 E-value=0.0065 Score=51.61 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=18.4
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..|.|+|.||+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46889999999999999999876
No 243
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.49 E-value=0.0022 Score=50.77 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.4
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++.|+|++|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998665
No 244
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.49 E-value=0.0059 Score=47.04 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=19.8
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
++.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999998775
No 245
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.48 E-value=0.0066 Score=53.13 Aligned_cols=112 Identities=21% Similarity=0.209 Sum_probs=62.5
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHH
Q 041190 131 EVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQ 210 (261)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~ 210 (261)
.++|.+.....+...+... +-+.+.|++|+|||+||+.+..... - .-.+|.+.......++.....-
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~l~--~---~~~~i~~t~~l~p~d~~G~~~~ 91 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARALG--L---PFVRIQCTPDLLPSDLLGTYAY 91 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHHhC--C---CeEEEecCCCCCHHHhcCchhH
Confidence 3778776666665555543 3578999999999999999988632 1 2345666666665554433222
Q ss_pred HhcCCCCCCCHHHHHHHHHHHhCCCeEEEEEeCCCCCChhhHHHhhccc
Q 041190 211 AAAGSADVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVWTNLCKPF 259 (261)
Q Consensus 211 ~l~~~~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~~~~~w~~l~~~l 259 (261)
..... ......-...-+ +.+-+.++.+|+++...+..-..|...|
T Consensus 92 ~~~~~-~~~~~~~~~gpl---~~~~~~ill~DEInra~p~~q~aLl~~l 136 (329)
T COG0714 92 AALLL-EPGEFRFVPGPL---FAAVRVILLLDEINRAPPEVQNALLEAL 136 (329)
T ss_pred hhhhc-cCCeEEEecCCc---ccccceEEEEeccccCCHHHHHHHHHHH
Confidence 21100 000000000000 0111169999999998876655555443
No 246
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.48 E-value=0.0088 Score=53.58 Aligned_cols=52 Identities=23% Similarity=0.283 Sum_probs=37.7
Q ss_pred CccccccchHHHHHHHhhCC--------CCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 130 EEVYGREKDKEVIVGLLLGD--------DLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
..++|.++.++.+.-.+... ...+....+-|.++|++|+|||++|+.+....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45889988888887666531 00012234678899999999999999998873
No 247
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.48 E-value=0.0019 Score=51.72 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.7
Q ss_pred EEeEeecCCCChHHHHHHHhhcc
Q 041190 159 VIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998763
No 248
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.47 E-value=0.014 Score=53.03 Aligned_cols=88 Identities=19% Similarity=0.284 Sum_probs=52.6
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCC-CHHHHHHHHHHHhc-C-------CCCCCCHH-----H
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDF-DAVGVTKVILQAAA-G-------SADVNDLN-----L 223 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~i~~~i~~~l~-~-------~~~~~~~~-----~ 223 (261)
.-++|.|.+|+|||||+..+........ =+..+++-+.+.. .+.+++.++...-. . ..+..... .
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 4589999999999999998876532221 1356677776654 34555555554321 1 11111111 1
Q ss_pred HHHHHHHHh---CCCeEEEEEeCCCC
Q 041190 224 LQLQLENQL---KNKKFLLVLDDMWS 246 (261)
Q Consensus 224 ~~~~l~~~l---~~kr~LiVlDdvw~ 246 (261)
..-.+-+++ +++++||++|++-.
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecchHH
Confidence 122345555 68999999999954
No 249
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.47 E-value=0.013 Score=52.32 Aligned_cols=25 Identities=28% Similarity=0.232 Sum_probs=21.4
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+++.++|++|+||||.+..+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~ 197 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAI 197 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999988887654
No 250
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.47 E-value=0.015 Score=52.18 Aligned_cols=73 Identities=21% Similarity=0.170 Sum_probs=42.8
Q ss_pred EEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCeEE
Q 041190 159 VIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGSADVNDLNLLQLQLENQLKNKKFL 238 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~L 238 (261)
++.|+|+.++||||+++.+.... .+. .++++..+......-+.+.+.. +.+.-..++.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~--~~~---~iy~~~~d~~~~~~~l~d~~~~----------------~~~~~~~~~~y 97 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGL--LEE---IIYINFDDLRLDRIELLDLLRA----------------YIELKEREKSY 97 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhC--Ccc---eEEEEecchhcchhhHHHHHHH----------------HHHhhccCCce
Confidence 99999999999999997776552 111 4555433322111111111111 11111128899
Q ss_pred EEEeCCCCCChhhHHH
Q 041190 239 LVLDDMWSENYDVWTN 254 (261)
Q Consensus 239 iVlDdvw~~~~~~w~~ 254 (261)
|+||+|.+.. .|..
T Consensus 98 ifLDEIq~v~--~W~~ 111 (398)
T COG1373 98 IFLDEIQNVP--DWER 111 (398)
T ss_pred EEEecccCch--hHHH
Confidence 9999999984 6754
No 251
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.061 Score=50.98 Aligned_cols=103 Identities=18% Similarity=0.090 Sum_probs=60.1
Q ss_pred CCCccccccchHHHHHHHhhCCCC------C-CCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCC
Q 041190 128 DEEEVYGREKDKEVIVGLLLGDDL------N-SGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFD 200 (261)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~------~-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 200 (261)
.-.++-|..+.++-|.+.+.-... . .-+...=|.++|++|+|||.||..+..... .-+++|.++
T Consensus 665 ~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~-------~~fisvKGP-- 735 (952)
T KOG0735|consen 665 RWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN-------LRFISVKGP-- 735 (952)
T ss_pred CceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC-------eeEEEecCH--
Confidence 344566777777777777655320 0 112233478899999999999999987622 124556553
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCh
Q 041190 201 AVGVTKVILQAAAGSADVNDLNLLQLQLENQLKNKKFLLVLDDMWSENY 249 (261)
Q Consensus 201 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~~~ 249 (261)
+++.+.+ +.+.+.+..-+.+.-.-|.|++++|+..+..|
T Consensus 736 --ElL~KyI--------GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAP 774 (952)
T KOG0735|consen 736 --ELLSKYI--------GASEQNVRDLFERAQSAKPCILFFDEFDSIAP 774 (952)
T ss_pred --HHHHHHh--------cccHHHHHHHHHHhhccCCeEEEeccccccCc
Confidence 2222221 11222222222333356899999999888654
No 252
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.46 E-value=0.0029 Score=49.93 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.0
Q ss_pred CceEEeEeecCCCChHHHHHHHhhcc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
...+++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 46799999999999999999998663
No 253
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.46 E-value=0.004 Score=57.68 Aligned_cols=55 Identities=20% Similarity=0.182 Sum_probs=40.1
Q ss_pred cchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEee
Q 041190 136 EKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYV 195 (261)
Q Consensus 136 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v 195 (261)
.+-++++..||...-. .....+++.++|++|+||||.++.+.+.. .|+.+-|.+-
T Consensus 25 kkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~el----g~~v~Ew~np 79 (519)
T PF03215_consen 25 KKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKEL----GFEVQEWINP 79 (519)
T ss_pred HHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHHh----CCeeEEecCC
Confidence 4456788888875321 23345699999999999999999998862 4667778653
No 254
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.011 Score=49.60 Aligned_cols=96 Identities=19% Similarity=0.143 Sum_probs=55.1
Q ss_pred ccccccchHHHHHHHhhCCCCC-------CCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHH
Q 041190 131 EVYGREKDKEVIVGLLLGDDLN-------SGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVG 203 (261)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~ 203 (261)
++-|=.++.++|.+...-.-.. +-..++=+..+|++|+|||.+|+.|.|. ....| +.|-++ +
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanr--tdacf-----irvigs----e 246 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANR--TDACF-----IRVIGS----E 246 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcc--cCceE-----EeehhH----H
Confidence 3455667777777754322100 1123455788999999999999999997 33333 333221 1
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHhCC-CeEEEEEeCCCC
Q 041190 204 VTKVILQAAAGSADVNDLNLLQLQLENQLKN-KKFLLVLDDMWS 246 (261)
Q Consensus 204 i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~-kr~LiVlDdvw~ 246 (261)
+.++ ....-..+.+.|.+.-+. |-++|++|++.-
T Consensus 247 lvqk---------yvgegarmvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 247 LVQK---------YVGEGARMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred HHHH---------HhhhhHHHHHHHHHHhcccceEEEEeecccc
Confidence 1111 111223344555555554 569999998864
No 255
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.45 E-value=0.002 Score=51.18 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.1
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+|.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999876
No 256
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.44 E-value=0.0021 Score=51.16 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=20.2
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 257
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.44 E-value=0.0024 Score=50.61 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=21.1
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+++.|+|++|+|||||++.+.+.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 47899999999999999999875
No 258
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.0052 Score=56.85 Aligned_cols=74 Identities=18% Similarity=0.082 Sum_probs=44.0
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhCC
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGSADVNDLNLLQLQLENQLKN 234 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 234 (261)
...+.+-++|++|+|||.||+.+.+. ...+|-... .. .++. ..-......+...+....+.
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~--~~~~fi~v~-----~~----~l~s--------k~vGesek~ir~~F~~A~~~ 334 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALE--SRSRFISVK-----GS----ELLS--------KWVGESEKNIRELFEKARKL 334 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhh--CCCeEEEee-----CH----HHhc--------cccchHHHHHHHHHHHHHcC
Confidence 34568899999999999999999995 334442221 11 1000 00111222222333444467
Q ss_pred CeEEEEEeCCCCC
Q 041190 235 KKFLLVLDDMWSE 247 (261)
Q Consensus 235 kr~LiVlDdvw~~ 247 (261)
..+.|++|++.+.
T Consensus 335 ~p~iiFiDEiDs~ 347 (494)
T COG0464 335 APSIIFIDEIDSL 347 (494)
T ss_pred CCcEEEEEchhhh
Confidence 8899999998764
No 259
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.43 E-value=0.021 Score=48.34 Aligned_cols=90 Identities=26% Similarity=0.228 Sum_probs=54.7
Q ss_pred eEEeEeecCCCChHHHHHHHhhcccc--ccccceeEEEeeCCCC-CHHHHHHHHHHHhc-C-------CCCCCCHH----
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGV--KKYFSFRACAYVSEDF-DAVGVTKVILQAAA-G-------SADVNDLN---- 222 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~f~~~~wv~v~~~~-~~~~i~~~i~~~l~-~-------~~~~~~~~---- 222 (261)
.-++|.|-.|+|||+|+..+.++... +.+-+..+++-+.+.. ...+++.++...=. . ..+.....
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 35789999999999999998876431 1224567888888755 34555555544311 1 11111111
Q ss_pred -HHHHHHHHHh---CCCeEEEEEeCCCCC
Q 041190 223 -LLQLQLENQL---KNKKFLLVLDDMWSE 247 (261)
Q Consensus 223 -~~~~~l~~~l---~~kr~LiVlDdvw~~ 247 (261)
...-.+-+++ +++++|+++||+-.-
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 1122244444 378999999998654
No 260
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=96.43 E-value=0.011 Score=46.73 Aligned_cols=100 Identities=22% Similarity=0.135 Sum_probs=53.7
Q ss_pred CceEEeEeecCCCChHHHHHHHhhcccc----c----------cccceeEEEeeCCCCCHHHHHHHHHHHhc------CC
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDAGV----K----------KYFSFRACAYVSEDFDAVGVTKVILQAAA------GS 215 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~----------~~f~~~~wv~v~~~~~~~~i~~~i~~~l~------~~ 215 (261)
+-.-|.+.|+.|+||||+.+.+....-. . ..+...+| .+++......++...+.... ..
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~-d~gG~~~~~~~w~~y~~~~~~iIfVvDs 91 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIW-DLGGQESFRPLWKSYFQNADGIIFVVDS 91 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEE-EESSSGGGGGGGGGGHTTESEEEEEEET
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEE-eccccccccccceeeccccceeEEEEec
Confidence 4566799999999999999999764211 0 11112222 35554444444544444322 11
Q ss_pred CCCCCHHHHHHHHHHHh-----CCCeEEEEEeCCCCCChhhHHHhh
Q 041190 216 ADVNDLNLLQLQLENQL-----KNKKFLLVLDDMWSENYDVWTNLC 256 (261)
Q Consensus 216 ~~~~~~~~~~~~l~~~l-----~~kr~LiVlDdvw~~~~~~w~~l~ 256 (261)
.+.....+....+.+.+ .+.++||++---........+++.
T Consensus 92 sd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~ 137 (175)
T PF00025_consen 92 SDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIK 137 (175)
T ss_dssp TGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHH
T ss_pred ccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHH
Confidence 22333445555555544 467888887655443322334444
No 261
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.42 E-value=0.0031 Score=49.78 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=22.7
Q ss_pred CceEEeEeecCCCChHHHHHHHhhcc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
+..+|.++|++|+||||+|+.+....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999998763
No 262
>PRK08149 ATP synthase SpaL; Validated
Probab=96.41 E-value=0.02 Score=51.66 Aligned_cols=87 Identities=15% Similarity=0.272 Sum_probs=50.1
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCC-CCHHHHHHHHHHHhc--------CCCCCCCHH-----
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSED-FDAVGVTKVILQAAA--------GSADVNDLN----- 222 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~i~~~i~~~l~--------~~~~~~~~~----- 222 (261)
-..++|+|.+|+|||||++.+.+.... +..+...+... ....++..+.+.... ...+.....
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~~----dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSEA----DVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCCC----CeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 347899999999999999999875322 23333334332 244555555554322 111221111
Q ss_pred HHHHHHHHHh--CCCeEEEEEeCCCCC
Q 041190 223 LLQLQLENQL--KNKKFLLVLDDMWSE 247 (261)
Q Consensus 223 ~~~~~l~~~l--~~kr~LiVlDdvw~~ 247 (261)
...-.+-+++ ++|++|+++||+-.-
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 1122233333 589999999999553
No 263
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.41 E-value=0.0066 Score=53.07 Aligned_cols=46 Identities=17% Similarity=0.132 Sum_probs=36.8
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 131 EVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++|.......+.+.+..-. ..-..|.|+|.+|+||+++|+.++..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a----~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLA----PLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred ccEECCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 48898888888888776632 23356889999999999999999864
No 264
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.40 E-value=0.009 Score=53.12 Aligned_cols=96 Identities=23% Similarity=0.126 Sum_probs=55.6
Q ss_pred HHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCCC--
Q 041190 139 KEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGSA-- 216 (261)
Q Consensus 139 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~~-- 216 (261)
...+-+.|.. +-..-.++.|.|.+|+|||||+.++.... ...-....|++..+. ...+. .-..+++...
T Consensus 68 i~eLD~vLgG----Gi~~GslvLI~G~pG~GKStLllq~a~~~--a~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~ 138 (372)
T cd01121 68 IEELDRVLGG----GLVPGSVILIGGDPGIGKSTLLLQVAARL--AKRGGKVLYVSGEES--PEQIK-LRADRLGISTEN 138 (372)
T ss_pred CHHHHHhhcC----CccCCeEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCcC--HHHHH-HHHHHcCCCccc
Confidence 4455555543 23345799999999999999999987652 222234567765443 33322 2234444111
Q ss_pred ----CCCCHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 041190 217 ----DVNDLNLLQLQLENQLKNKKFLLVLDDMWS 246 (261)
Q Consensus 217 ----~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~ 246 (261)
...+.+.+...+. ..+.-+||+|.+..
T Consensus 139 l~l~~e~~le~I~~~i~---~~~~~lVVIDSIq~ 169 (372)
T cd01121 139 LYLLAETNLEDILASIE---ELKPDLVIIDSIQT 169 (372)
T ss_pred EEEEccCcHHHHHHHHH---hcCCcEEEEcchHH
Confidence 2234455544443 34667899999854
No 265
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.40 E-value=0.039 Score=45.46 Aligned_cols=41 Identities=20% Similarity=0.132 Sum_probs=28.7
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCC
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSE 197 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 197 (261)
+.-.++.|.|.+|+|||||+..+.... .+ .-...+|++...
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~-~~-~g~~~~~is~e~ 58 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKG-LR-DGDPVIYVTTEE 58 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHH-Hh-cCCeEEEEEccC
Confidence 456799999999999999998865431 11 223457777644
No 266
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.39 E-value=0.0079 Score=50.77 Aligned_cols=87 Identities=20% Similarity=0.082 Sum_probs=58.1
Q ss_pred CCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcC-------------------
Q 041190 154 GPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAG------------------- 214 (261)
Q Consensus 154 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~------------------- 214 (261)
-+.-+++.|+|.+|+|||+++.+.... ...+.....||+..++ ...+++.+.+ ++.
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~--~~~~ge~vlyvs~~e~--~~~l~~~~~~-~g~d~~~~~~~g~l~i~d~~~~ 94 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYE--GAREGEPVLYVSTEES--PEELLENARS-FGWDLEVYIEKGKLAILDAFLS 94 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHH--HHhcCCcEEEEEecCC--HHHHHHHHHH-cCCCHHHHhhcCCEEEEEcccc
Confidence 456789999999999999999887765 3445778999998884 3444444322 220
Q ss_pred CCC--------CCCHHHHHHHHHHHhCC-CeEEEEEeCCC
Q 041190 215 SAD--------VNDLNLLQLQLENQLKN-KKFLLVLDDMW 245 (261)
Q Consensus 215 ~~~--------~~~~~~~~~~l~~~l~~-kr~LiVlDdvw 245 (261)
... ..+...+...|++.... +...+|+|.+-
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~ 134 (260)
T COG0467 95 EKGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSIT 134 (260)
T ss_pred ccccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 000 12445566667666643 37788999886
No 267
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.38 E-value=0.22 Score=44.66 Aligned_cols=72 Identities=24% Similarity=0.200 Sum_probs=42.7
Q ss_pred HHHHHHHhhCCCCC---CCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCC--CCHHHHHHHHHHHhc
Q 041190 139 KEVIVGLLLGDDLN---SGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSED--FDAVGVTKVILQAAA 213 (261)
Q Consensus 139 ~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~--~~~~~i~~~i~~~l~ 213 (261)
.++|+++|...... ....+.||-.+|.-|+||||-+-.+.+..+. ..+ .+-+..... +...+.++.+.++++
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~--kvllVaaD~~RpAA~eQL~~La~q~~ 155 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK-KGK--KVLLVAADTYRPAAIEQLKQLAEQVG 155 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHH-cCC--ceEEEecccCChHHHHHHHHHHHHcC
Confidence 56777777742211 1345789999999999999988777665322 222 222222222 344555666666665
No 268
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.38 E-value=0.0027 Score=50.20 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=21.1
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
++|.+.|++|+||||+|+.+.+.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999876
No 269
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.37 E-value=0.016 Score=43.91 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=19.3
Q ss_pred EeEeecCCCChHHHHHHHhhc
Q 041190 160 IPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 160 i~I~G~~GiGKTtLa~~v~~~ 180 (261)
|+|+|.+|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999776
No 270
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.37 E-value=0.0024 Score=48.51 Aligned_cols=22 Identities=41% Similarity=0.680 Sum_probs=20.2
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+|.|+|++|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 271
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.36 E-value=0.0025 Score=48.86 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.7
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
++.++|++|+||||+|+.+.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4678999999999999999876
No 272
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.36 E-value=0.0035 Score=47.83 Aligned_cols=39 Identities=21% Similarity=0.332 Sum_probs=26.8
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCC
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSE 197 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 197 (261)
++|.|+|..|+|||||++.+.+... +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~-~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK-RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH-HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh-HcCCceEEEEEccC
Confidence 4799999999999999999998743 23455554555444
No 273
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.36 E-value=0.026 Score=50.89 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=20.5
Q ss_pred CceEEeEeecCCCChHHHHHHHhh
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
+-.+++++|+.|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999987754
No 274
>PF14516 AAA_35: AAA-like domain
Probab=96.35 E-value=0.077 Score=46.52 Aligned_cols=112 Identities=13% Similarity=0.066 Sum_probs=69.1
Q ss_pred CCCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCC----C-CCHH
Q 041190 128 DEEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSE----D-FDAV 202 (261)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~----~-~~~~ 202 (261)
+.+..+.|...-+.+.+.|... -..+.|.|+..+|||+|...+.+..+.. .+. .+++++.. . .+..
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~~-~~~-~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GYR-CVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHHC-CCE-EEEEEeecCCCcccCCHH
Confidence 4445677885666666666542 2589999999999999999998774332 343 34565543 1 2456
Q ss_pred HHHHHHHHHhcCCC------------CCCCHHHHHHHHHHHh---CCCeEEEEEeCCCCCC
Q 041190 203 GVTKVILQAAAGSA------------DVNDLNLLQLQLENQL---KNKKFLLVLDDMWSEN 248 (261)
Q Consensus 203 ~i~~~i~~~l~~~~------------~~~~~~~~~~~l~~~l---~~kr~LiVlDdvw~~~ 248 (261)
..++.++..+.... ...+.......+.+.+ .+++.+|+||+|...-
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~ 140 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLF 140 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhc
Confidence 56666665554111 1112233334444433 2689999999998664
No 275
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.34 E-value=0.033 Score=47.04 Aligned_cols=42 Identities=24% Similarity=0.224 Sum_probs=29.3
Q ss_pred CCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCC
Q 041190 154 GPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSE 197 (261)
Q Consensus 154 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 197 (261)
-+.-+++.|+|.+|+|||+++.++.... .+ .=...++++...
T Consensus 33 ip~gs~~lI~G~pGtGKT~l~~qf~~~~-a~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 33 IPAYSVINITGVSDTGKSLMVEQFAVTQ-AS-RGNPVLFVTVES 74 (259)
T ss_pred eECCcEEEEEcCCCCCHHHHHHHHHHHH-Hh-CCCcEEEEEecC
Confidence 3456799999999999999999875431 11 122456777654
No 276
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.34 E-value=0.011 Score=53.01 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=37.9
Q ss_pred CccccccchHHHHHHHhhCC--------CCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGD--------DLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..++|.+..++.+...+... ........+.+.++|++|+|||+||+.+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999998888877541 0001112467899999999999999999876
No 277
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.012 Score=53.78 Aligned_cols=47 Identities=34% Similarity=0.375 Sum_probs=34.6
Q ss_pred chHHHHHHHhhCCCC--C-CCCCceEEeEeecCCCChHHHHHHHhhcccc
Q 041190 137 KDKEVIVGLLLGDDL--N-SGPGFSVIPITGMGGLGKTTLAQLVFNDAGV 183 (261)
Q Consensus 137 ~~~~~l~~~L~~~~~--~-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 183 (261)
.++++|+++|.+... . ++.=++=|.++|++|+|||-||+.|.-...+
T Consensus 314 ~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 314 QELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred HHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 567888888876421 0 2233556889999999999999999887554
No 278
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.33 E-value=0.0033 Score=50.91 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.9
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+|.|+|++|+|||||++.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999876
No 279
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.0018 Score=52.07 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=20.0
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+.|-+.|.+|+||||+|+++..-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 46778999999999999998765
No 280
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.32 E-value=0.02 Score=55.11 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.8
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..++.++|+.|+||||.+.++...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 479999999999999988887654
No 281
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.32 E-value=0.004 Score=50.35 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=23.2
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
++..++.|+|++|+||||||+.+...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999775
No 282
>PRK06936 type III secretion system ATPase; Provisional
Probab=96.30 E-value=0.019 Score=51.88 Aligned_cols=84 Identities=18% Similarity=0.196 Sum_probs=50.8
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCC-HHHHHHHHHHHhc-C-------CCCCCCHH-----
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFD-AVGVTKVILQAAA-G-------SADVNDLN----- 222 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~i~~~i~~~l~-~-------~~~~~~~~----- 222 (261)
-..++|.|..|+|||||.+.+++... -++.+++-+++... ..++....+..-+ . ..+.....
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAG 237 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHH
Confidence 35789999999999999999998632 24567777777543 3333433222211 1 11111111
Q ss_pred ----HHHHHHHHHhCCCeEEEEEeCCCC
Q 041190 223 ----LLQLQLENQLKNKKFLLVLDDMWS 246 (261)
Q Consensus 223 ----~~~~~l~~~l~~kr~LiVlDdvw~ 246 (261)
.+...+++ .+|++|+++||+-.
T Consensus 238 ~~a~tiAEyfrd--~G~~Vll~~DslTR 263 (439)
T PRK06936 238 FVATSIAEYFRD--QGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHH--cCCCEEEeccchhH
Confidence 12333333 58999999999954
No 283
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.29 E-value=0.022 Score=52.19 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.5
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..|++++|+.|+||||++.++...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 479999999999999999988865
No 284
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.28 E-value=0.054 Score=42.30 Aligned_cols=42 Identities=26% Similarity=0.271 Sum_probs=28.9
Q ss_pred cccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 134 GREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 134 gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
|.++..+.|...+..+ .-...+-++|+.|+||+++|..+.+.
T Consensus 1 gq~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ 42 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARA 42 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHH
Confidence 4455667777777543 23456889999999999998777554
No 285
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=96.27 E-value=0.015 Score=52.66 Aligned_cols=89 Identities=13% Similarity=0.178 Sum_probs=55.3
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCC-HHHHHHHHHHHhc-C-------CCCCCCHH-----H
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFD-AVGVTKVILQAAA-G-------SADVNDLN-----L 223 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~i~~~i~~~l~-~-------~~~~~~~~-----~ 223 (261)
.-++|.|.+|+|||+|+..+.+... +.+-++.+++-+.+... ..+++.++...-. . ..+..... .
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~ 217 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGH 217 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHH
Confidence 4689999999999999999877632 22346778888877553 4555555544311 1 11111111 1
Q ss_pred HHHHHHHHh---CCCeEEEEEeCCCCC
Q 041190 224 LQLQLENQL---KNKKFLLVLDDMWSE 247 (261)
Q Consensus 224 ~~~~l~~~l---~~kr~LiVlDdvw~~ 247 (261)
..-.+-+++ +++++|+++||+-.-
T Consensus 218 ~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 218 TALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHhcCCceEEEecChHHH
Confidence 223355555 468999999999553
No 286
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.27 E-value=0.0031 Score=49.26 Aligned_cols=20 Identities=50% Similarity=0.776 Sum_probs=18.4
Q ss_pred EEeEeecCCCChHHHHHHHh
Q 041190 159 VIPITGMGGLGKTTLAQLVF 178 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~ 178 (261)
.|.|.|.||+||||+++.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999885
No 287
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.25 E-value=0.023 Score=52.44 Aligned_cols=101 Identities=15% Similarity=0.044 Sum_probs=62.4
Q ss_pred chHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcC--
Q 041190 137 KDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAG-- 214 (261)
Q Consensus 137 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~-- 214 (261)
.....|-++|.. +-+.-+++.|.|++|+|||||+.+..... ..+=+..+++...+ +..++...+ +.++-
T Consensus 247 tGi~~lD~~lgG----G~~~gs~~li~G~~G~GKt~l~~~f~~~~--~~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~ 317 (484)
T TIGR02655 247 SGVVRLDEMCGG----GFFKDSIILATGATGTGKTLLVSKFLENA--CANKERAILFAYEE--SRAQLLRNA-YSWGIDF 317 (484)
T ss_pred CChHhHHHHhcC----CccCCcEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEEeeC--CHHHHHHHH-HHcCCCh
Confidence 345666666654 34567899999999999999998886652 11223456666555 444554443 34431
Q ss_pred --------------CCCCCCHHHHHHHHHHHhCC-CeEEEEEeCCCC
Q 041190 215 --------------SADVNDLNLLQLQLENQLKN-KKFLLVLDDMWS 246 (261)
Q Consensus 215 --------------~~~~~~~~~~~~~l~~~l~~-kr~LiVlDdvw~ 246 (261)
.+.....+.....+++.+.. +.-++|+|.+-.
T Consensus 318 ~~~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~ 364 (484)
T TIGR02655 318 EEMEQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSA 364 (484)
T ss_pred HHHhhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 01123346666777777643 556899999864
No 288
>PRK06620 hypothetical protein; Validated
Probab=96.25 E-value=0.0035 Score=51.43 Aligned_cols=52 Identities=21% Similarity=0.184 Sum_probs=31.9
Q ss_pred CCCccccc-c-chHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 128 DEEEVYGR-E-KDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 128 ~~~~~~gr-~-~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.++.++|. + .....+..+-.... .++..+.+.|+|++|+|||+|++.+++..
T Consensus 15 fd~Fvvg~~N~~a~~~~~~~~~~~~--~~~~~~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 15 PDEFIVSSSNDQAYNIIKNWQCGFG--VNPYKFTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred chhhEecccHHHHHHHHHHHHHccc--cCCCcceEEEECCCCCCHHHHHHHHHhcc
Confidence 44556665 2 23444444432111 11112678999999999999999987763
No 289
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.24 E-value=0.027 Score=45.86 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=19.1
Q ss_pred EeEeecCCCChHHHHHHHhhc
Q 041190 160 IPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 160 i~I~G~~GiGKTtLa~~v~~~ 180 (261)
|.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKsT~a~~La~~ 22 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEK 22 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999765
No 290
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.24 E-value=0.0068 Score=45.71 Aligned_cols=27 Identities=37% Similarity=0.474 Sum_probs=23.4
Q ss_pred ceEEeEeecCCCChHHHHHHHhhcccc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGV 183 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 183 (261)
-.+|.+.|.-|+||||+++.+.+....
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 458999999999999999999987443
No 291
>PHA00729 NTP-binding motif containing protein
Probab=96.24 E-value=0.0045 Score=50.92 Aligned_cols=24 Identities=46% Similarity=0.452 Sum_probs=21.4
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...|.|+|.+|+||||||..+.+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999999876
No 292
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.23 E-value=0.014 Score=50.46 Aligned_cols=113 Identities=19% Similarity=0.150 Sum_probs=68.9
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccce-eEEEeeCCCCCHHH-HHHH
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSF-RACAYVSEDFDAVG-VTKV 207 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~v~~~~~~~~-i~~~ 207 (261)
..++|-.++...+..++...-. -....-+.|+|+.|.|||+|...+..+. +.|.. ..-|...+....++ .++.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~~---q~~~E~~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSDI---QENGENFLLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhhH---HhcCCeEEEEEECccchhhHHHHHH
Confidence 4588988888888888865311 1123457889999999999999888772 22322 23344544433322 3555
Q ss_pred HHHHhc-----CCCCCCCHHHHHHHHHHHhCC------CeEEEEEeCCCCC
Q 041190 208 ILQAAA-----GSADVNDLNLLQLQLENQLKN------KKFLLVLDDMWSE 247 (261)
Q Consensus 208 i~~~l~-----~~~~~~~~~~~~~~l~~~l~~------kr~LiVlDdvw~~ 247 (261)
|..++. ......+..+...++...|+. -++++|+|+..--
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf 149 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLF 149 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhcc
Confidence 666554 122334555555666666642 3588888887543
No 293
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.23 E-value=0.0063 Score=53.08 Aligned_cols=53 Identities=26% Similarity=0.327 Sum_probs=44.7
Q ss_pred CCCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 128 DEEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
....++|.++.++++++.+.......+..-+++.+.|+.|.|||||+..+.+-
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~ 111 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRG 111 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999988754334567889999999999999999998775
No 294
>PTZ00494 tuzin-like protein; Provisional
Probab=96.23 E-value=0.48 Score=43.07 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=61.1
Q ss_pred CCCCCCCCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHH
Q 041190 123 TPSLVDEEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAV 202 (261)
Q Consensus 123 ~~~~~~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 202 (261)
+........++.|+.+-..+...|..- +..+++++.+.|..|+||++|.+.....+.+ ...+|.|... +
T Consensus 364 ~~a~a~~~~~V~R~~eE~~vRqvL~ql---d~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~---E 432 (664)
T PTZ00494 364 MLAAAAEAFEVRREDEEALVRSVLTQM---APSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT---E 432 (664)
T ss_pred cccccccccccchhhHHHHHHHHHhhc---cCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---c
Confidence 334456677899998888888888765 3567899999999999999999988776444 3566776554 4
Q ss_pred HHHHHHHHHhc
Q 041190 203 GVTKVILQAAA 213 (261)
Q Consensus 203 ~i~~~i~~~l~ 213 (261)
+-++.+.+.++
T Consensus 433 DtLrsVVKALg 443 (664)
T PTZ00494 433 DTLRSVVRALG 443 (664)
T ss_pred chHHHHHHHhC
Confidence 45778888888
No 295
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.23 E-value=0.0036 Score=49.28 Aligned_cols=22 Identities=50% Similarity=0.629 Sum_probs=18.9
Q ss_pred EeEeecCCCChHHHHHHHhhcc
Q 041190 160 IPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 160 i~I~G~~GiGKTtLa~~v~~~~ 181 (261)
|.|.|.+|+|||||++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999999999998764
No 296
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.23 E-value=0.025 Score=46.85 Aligned_cols=50 Identities=20% Similarity=0.133 Sum_probs=30.8
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHH
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVI 208 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i 208 (261)
+.-.++.|.|++|+|||||+.++.... .+.. ...++++... +..++++.+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 345699999999999999975554431 1222 2345565333 445555554
No 297
>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=96.22 E-value=0.017 Score=44.39 Aligned_cols=50 Identities=24% Similarity=0.358 Sum_probs=34.8
Q ss_pred hHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHH--HHHHHhhccccccccceeEEEeeCCC
Q 041190 138 DKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTT--LAQLVFNDAGVKKYFSFRACAYVSED 198 (261)
Q Consensus 138 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTt--La~~v~~~~~~~~~f~~~~wv~v~~~ 198 (261)
+..-|+++|..-- ...+-.+|+|.||+-+|||. +|-.||.+ .-|.-+|++
T Consensus 37 eLGlLVDFmaEl~--K~~Gh~lIGiRGmPRVGKTEsivAasVcAn---------KrW~f~SST 88 (192)
T PF11868_consen 37 ELGLLVDFMAELF--KEEGHKLIGIRGMPRVGKTESIVAASVCAN---------KRWLFLSST 88 (192)
T ss_pred HhccHHHHHHHHH--HhcCceEEeecCCCccCchhHHHHHhhhcC---------ceEEEeeHH
Confidence 4555555543310 11245899999999999997 77888876 568888884
No 298
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.20 E-value=0.0073 Score=56.31 Aligned_cols=45 Identities=31% Similarity=0.495 Sum_probs=36.0
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+..+..+...+... ...-+-|+|++|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 35899998898888876432 2345678999999999999999864
No 299
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.20 E-value=0.0046 Score=49.93 Aligned_cols=27 Identities=48% Similarity=0.522 Sum_probs=23.4
Q ss_pred CceEEeEeecCCCChHHHHHHHhhccc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDAG 182 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 182 (261)
...+|.|-||-|+||||||+.+.+..+
T Consensus 3 ~~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 3 VAMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred cccEEEEecccccCHHHHHHHHHHHhC
Confidence 357999999999999999999987743
No 300
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.19 E-value=0.0036 Score=47.49 Aligned_cols=22 Identities=32% Similarity=0.676 Sum_probs=19.9
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
++.|+|++|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999876
No 301
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.18 E-value=0.02 Score=51.55 Aligned_cols=51 Identities=33% Similarity=0.331 Sum_probs=35.7
Q ss_pred CCccccccchHHHHHHHhhC---------CCCCCC----CCceEEeEeecCCCChHHHHHHHhhc
Q 041190 129 EEEVYGREKDKEVIVGLLLG---------DDLNSG----PGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~---------~~~~~~----~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+..++|.+..++.+...+.. ... .+ .....+.++|++|+|||++|+.+...
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~-~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~ 139 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKK-SDNGVELSKSNILLIGPTGSGKTLLAQTLARI 139 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccc-cccccccCCceEEEECCCCcCHHHHHHHHHHh
Confidence 34589998888888665521 000 00 12357899999999999999999865
No 302
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.16 E-value=0.0047 Score=45.14 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.8
Q ss_pred EeEeecCCCChHHHHHHHhhcc
Q 041190 160 IPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 160 i~I~G~~GiGKTtLa~~v~~~~ 181 (261)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999998764
No 303
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=96.16 E-value=0.029 Score=50.74 Aligned_cols=86 Identities=16% Similarity=0.201 Sum_probs=48.8
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCC-CHHHHHHHHHHHhc-C-------CCCCCCHHH----
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDF-DAVGVTKVILQAAA-G-------SADVNDLNL---- 223 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~i~~~i~~~l~-~-------~~~~~~~~~---- 223 (261)
-..++|.|..|+|||||++.+.+.. +.+..++..+.+.. ...+++......=. . ..+......
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 4578999999999999999998753 23344555555533 33344444332100 0 111111111
Q ss_pred -HHHHHHHHh--CCCeEEEEEeCCCC
Q 041190 224 -LQLQLENQL--KNKKFLLVLDDMWS 246 (261)
Q Consensus 224 -~~~~l~~~l--~~kr~LiVlDdvw~ 246 (261)
..-.+-+++ +++++|+++||+-.
T Consensus 231 ~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 231 FVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 111233333 58999999999954
No 304
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.16 E-value=0.023 Score=49.32 Aligned_cols=75 Identities=16% Similarity=0.200 Sum_probs=47.1
Q ss_pred cchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccc--ccc---ceeEEEeeCCCCCHHHHHHHHHH
Q 041190 136 EKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVK--KYF---SFRACAYVSEDFDAVGVTKVILQ 210 (261)
Q Consensus 136 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~f---~~~~wv~v~~~~~~~~i~~~i~~ 210 (261)
+...+.|.+.|...+ .....+|+|.|.=|+|||++.+.+.+..+.. ..+ ..-+|-.-....-...++..|..
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~ 78 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFD 78 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHH
Confidence 345677788887642 2567899999999999999999998875433 112 12234433332234455555555
Q ss_pred Hhc
Q 041190 211 AAA 213 (261)
Q Consensus 211 ~l~ 213 (261)
++.
T Consensus 79 ~l~ 81 (325)
T PF07693_consen 79 QLE 81 (325)
T ss_pred HHH
Confidence 554
No 305
>PRK06217 hypothetical protein; Validated
Probab=96.16 E-value=0.0039 Score=49.69 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=21.7
Q ss_pred EEeEeecCCCChHHHHHHHhhcccc
Q 041190 159 VIPITGMGGLGKTTLAQLVFNDAGV 183 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~~~~ 183 (261)
-|.|.|.+|+||||+|+.+.+....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~ 27 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4899999999999999999887543
No 306
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.15 E-value=0.0043 Score=49.61 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.7
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++.|+|++|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999775
No 307
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=96.15 E-value=0.037 Score=50.26 Aligned_cols=87 Identities=17% Similarity=0.156 Sum_probs=48.5
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCC-CHHHHHHHHHHHhc-C-------CCCCCCHHH----
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDF-DAVGVTKVILQAAA-G-------SADVNDLNL---- 223 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~i~~~i~~~l~-~-------~~~~~~~~~---- 223 (261)
-..++|+|..|+|||||++.+..... .+..+...+.... ...++...+...-. . ..+......
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 34689999999999999999976421 2233333444432 33444444433321 1 112211111
Q ss_pred -HHHHHHHHh--CCCeEEEEEeCCCCC
Q 041190 224 -LQLQLENQL--KNKKFLLVLDDMWSE 247 (261)
Q Consensus 224 -~~~~l~~~l--~~kr~LiVlDdvw~~ 247 (261)
..-.+-+++ +++++|+++||+-.-
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecchhHH
Confidence 111233333 689999999998553
No 308
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.14 E-value=0.0095 Score=46.41 Aligned_cols=37 Identities=27% Similarity=0.441 Sum_probs=31.2
Q ss_pred cchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 136 EKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 136 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
....+.|.+.|.. +++.++|.+|+|||||.+.+..+.
T Consensus 23 ~~g~~~l~~~l~~---------k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 23 GEGIEELKELLKG---------KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTTHHHHHHHHTT---------SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CcCHHHHHHHhcC---------CEEEEECCCCCCHHHHHHHHHhhc
Confidence 4568888888843 689999999999999999998763
No 309
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.015 Score=54.27 Aligned_cols=58 Identities=21% Similarity=0.118 Sum_probs=38.8
Q ss_pred CCCccccccchHHHHHHHhhCCCCC-------CCCCceEEeEeecCCCChHHHHHHHhhcccccccc
Q 041190 128 DEEEVYGREKDKEVIVGLLLGDDLN-------SGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYF 187 (261)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f 187 (261)
.-.++-|.++-+.+|-+...-.-.. +-...+=|-.||++|+|||++|+.+.+. ...+|
T Consensus 432 ~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF 496 (693)
T KOG0730|consen 432 SWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNF 496 (693)
T ss_pred ChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCe
Confidence 3345666777777766544332100 2245667889999999999999999987 33445
No 310
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.14 E-value=0.0079 Score=47.90 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=26.9
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccccccceeEE
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRAC 192 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w 192 (261)
.+++.|+|+.|+|||||++.+... ....|...++
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~--~~~~~~~~v~ 35 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQE--FPDKFGRVVS 35 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHH--STTTEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh--ccccccccee
Confidence 368899999999999999999987 4456644443
No 311
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.031 Score=46.58 Aligned_cols=51 Identities=24% Similarity=0.136 Sum_probs=35.4
Q ss_pred CccccccchHHHHHHHhhCCCCC-------CCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLN-------SGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++-|.+-++.++.+...-.-.. +-..++=+.++|++|+|||-||+.|.++
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 35667777777777754322100 1223455788999999999999999998
No 312
>PRK13949 shikimate kinase; Provisional
Probab=96.13 E-value=0.0042 Score=48.98 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.6
Q ss_pred EEeEeecCCCChHHHHHHHhhcc
Q 041190 159 VIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
-|.|+|++|+||||+++.+.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998763
No 313
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.12 E-value=0.0081 Score=49.29 Aligned_cols=22 Identities=55% Similarity=0.869 Sum_probs=19.0
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.|+|+|-||+||||+|..+...
T Consensus 2 kIaI~GKGG~GKTtiaalll~~ 23 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR 23 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH
Confidence 6899999999999999885544
No 314
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.12 E-value=0.0044 Score=51.10 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=19.8
Q ss_pred ceEEeEeecCCCChHHHHHHHh
Q 041190 157 FSVIPITGMGGLGKTTLAQLVF 178 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~ 178 (261)
-.+++|+|.+|+|||||++.+.
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~ 54 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLA 54 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHh
Confidence 3589999999999999999984
No 315
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.12 E-value=0.018 Score=53.08 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=33.8
Q ss_pred CccccccchHHHHHHHhhC--C--CCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 130 EEVYGREKDKEVIVGLLLG--D--DLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~--~--~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.++.|.+..++.+...... . ..-+-+..+-|-++|++|+|||.+|+.+.+..
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 4567776666665542211 0 00012345668899999999999999998873
No 316
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.11 E-value=0.028 Score=50.69 Aligned_cols=87 Identities=18% Similarity=0.175 Sum_probs=48.2
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCC-CCHHHHHHHHHHHhc-C-------CCCCCCHHH----
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSED-FDAVGVTKVILQAAA-G-------SADVNDLNL---- 223 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~i~~~i~~~l~-~-------~~~~~~~~~---- 223 (261)
-..++|.|..|+|||||++.+....+ . +....+.+.+. ....++..+.+..-+ . ..+......
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~---~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD---A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 35789999999999999999987532 1 22222333332 234444444433321 1 111111111
Q ss_pred -HHHHHHHHh--CCCeEEEEEeCCCCC
Q 041190 224 -LQLQLENQL--KNKKFLLVLDDMWSE 247 (261)
Q Consensus 224 -~~~~l~~~l--~~kr~LiVlDdvw~~ 247 (261)
..-.+-+++ +++++|+++||+-.-
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 112244444 589999999998654
No 317
>PRK05922 type III secretion system ATPase; Validated
Probab=96.11 E-value=0.04 Score=49.80 Aligned_cols=85 Identities=13% Similarity=0.167 Sum_probs=47.7
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCC-CHHHHHHHHHHHhc-CC-------CCCCCHH-----H
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDF-DAVGVTKVILQAAA-GS-------ADVNDLN-----L 223 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~i~~~i~~~l~-~~-------~~~~~~~-----~ 223 (261)
..++|+|..|+|||||.+.+.+..+ -+....+.+++.. ...+.+.+...... .. .+..... .
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~ 233 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGR 233 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHH
Confidence 4689999999999999999987522 2333333344422 23344444433322 11 1111111 1
Q ss_pred HHHHHHHHh--CCCeEEEEEeCCCC
Q 041190 224 LQLQLENQL--KNKKFLLVLDDMWS 246 (261)
Q Consensus 224 ~~~~l~~~l--~~kr~LiVlDdvw~ 246 (261)
..-.+-+++ +++++|+++||+-.
T Consensus 234 ~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 234 AAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhH
Confidence 122234444 58999999999954
No 318
>PTZ00185 ATPase alpha subunit; Provisional
Probab=96.10 E-value=0.028 Score=51.59 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=54.0
Q ss_pred eEEeEeecCCCChHHHH-HHHhhccccc-----cccceeEEEeeCCCCCHHHHHHHHHHHhc--CC-------CCCCCH-
Q 041190 158 SVIPITGMGGLGKTTLA-QLVFNDAGVK-----KYFSFRACAYVSEDFDAVGVTKVILQAAA--GS-------ADVNDL- 221 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~-----~~f~~~~wv~v~~~~~~~~i~~~i~~~l~--~~-------~~~~~~- 221 (261)
.-++|.|-.|+|||+|| -.+.+...+. ++-...+++-+++..+...-+.+.+++.+ .. .+....
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 35789999999999996 5566653221 23345678888886543322333333332 10 111111
Q ss_pred --------HHHHHHHHHHhCCCeEEEEEeCCCCCChhhHHHh
Q 041190 222 --------NLLQLQLENQLKNKKFLLVLDDMWSENYDVWTNL 255 (261)
Q Consensus 222 --------~~~~~~l~~~l~~kr~LiVlDdvw~~~~~~w~~l 255 (261)
-.+.+.+++ +++.+|||+||+-.-. ..+.++
T Consensus 270 r~~Apy~a~tiAEYFrd--~GkdVLiv~DDLTr~A-~A~REI 308 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMN--RGRHCLCVYDDLSKQA-VAYRQI 308 (574)
T ss_pred HHHHHHHHHHHHHHHHH--cCCCEEEEEcCchHHH-HHHHHH
Confidence 122333442 5899999999997653 445444
No 319
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=96.10 E-value=0.049 Score=47.73 Aligned_cols=47 Identities=19% Similarity=0.097 Sum_probs=35.0
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCC-HHHHHHHH
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFD-AVGVTKVI 208 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~i~~~i 208 (261)
..++|.|..|+|||+|++.+.+.. +-++.+++-|.+..+ +.+++.++
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 478999999999999999998863 234677888877543 34455554
No 320
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.10 E-value=0.0082 Score=50.15 Aligned_cols=39 Identities=28% Similarity=0.356 Sum_probs=28.0
Q ss_pred hHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 138 DKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 138 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
....+++.|... ..+..+|+|.|+||+||+||.-.+...
T Consensus 14 ~~~~ll~~l~~~----~g~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 14 EARELLKRLYPH----TGRAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp HHHHHHHHHGGG----TT-SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh----cCCceEEEeeCCCCCcHHHHHHHHHHH
Confidence 455666666653 235689999999999999999887665
No 321
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.019 Score=49.06 Aligned_cols=27 Identities=33% Similarity=0.311 Sum_probs=23.7
Q ss_pred CceEEeEeecCCCChHHHHHHHhhccc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDAG 182 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 182 (261)
.+..+.|||++|.|||-+|+.|.....
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg 191 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMG 191 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcC
Confidence 466899999999999999999998733
No 322
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.10 E-value=0.024 Score=44.64 Aligned_cols=79 Identities=18% Similarity=0.131 Sum_probs=43.9
Q ss_pred EeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhCC--CeE
Q 041190 160 IPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGSADVNDLNLLQLQLENQLKN--KKF 237 (261)
Q Consensus 160 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~--kr~ 237 (261)
+.|.|.+|+|||++|.+.... ......++.-++.++. ++...|..+.......-...+....+.+.+.. +.-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~ 75 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGD 75 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCC
Confidence 678999999999999988654 1234566666666654 34444444333222222222222333444421 233
Q ss_pred EEEEeCC
Q 041190 238 LLVLDDM 244 (261)
Q Consensus 238 LiVlDdv 244 (261)
.|++|.+
T Consensus 76 ~VLIDcl 82 (169)
T cd00544 76 VVLIDCL 82 (169)
T ss_pred EEEEEcH
Confidence 7999987
No 323
>PRK14527 adenylate kinase; Provisional
Probab=96.10 E-value=0.0055 Score=49.18 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=22.8
Q ss_pred CceEEeEeecCCCChHHHHHHHhhcc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
+..+|.|+|++|+||||+|+.+.+..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998664
No 324
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.08 E-value=0.0066 Score=49.42 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=22.6
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...+++.|+|++|+|||||++.+.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 46788999999999999999999753
No 325
>PRK14530 adenylate kinase; Provisional
Probab=96.08 E-value=0.0048 Score=50.54 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=20.0
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.|.|+|++|+||||+++.+...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999765
No 326
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.07 E-value=0.0056 Score=49.48 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=22.0
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..++.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999886
No 327
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=96.06 E-value=0.054 Score=47.23 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=48.4
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCC-CCHHHHHHHHHHHhc--------CCCCCCCHH------
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSED-FDAVGVTKVILQAAA--------GSADVNDLN------ 222 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~i~~~i~~~l~--------~~~~~~~~~------ 222 (261)
..++|+|..|+|||||.+.+.+.... ++.+..-+... ....++....+..-+ ...+.....
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~~----~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~ 145 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTTA----DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAY 145 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCCC----CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHH
Confidence 57899999999999999999876321 23333444332 344454444444321 111211111
Q ss_pred ---HHHHHHHHHhCCCeEEEEEeCCCCC
Q 041190 223 ---LLQLQLENQLKNKKFLLVLDDMWSE 247 (261)
Q Consensus 223 ---~~~~~l~~~l~~kr~LiVlDdvw~~ 247 (261)
.+...+++ ++|.+|+++||+-.-
T Consensus 146 ~a~~~AEyfr~--~g~~Vll~~Dsltr~ 171 (326)
T cd01136 146 TATAIAEYFRD--QGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHH--cCCCeEEEeccchHH
Confidence 22333333 589999999998553
No 328
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.06 E-value=0.004 Score=48.48 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=18.8
Q ss_pred EeEeecCCCChHHHHHHHhhc
Q 041190 160 IPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 160 i~I~G~~GiGKTtLa~~v~~~ 180 (261)
|.++|++|+||||+|+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999998876
No 329
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.06 E-value=0.025 Score=54.59 Aligned_cols=118 Identities=16% Similarity=0.069 Sum_probs=63.7
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHH
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVIL 209 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~ 209 (261)
..++|.......+.+.+..-. ..-..|.|+|.+|+|||++|+.+++...- . -..-+.+++.... ...+-..++
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a----~~~~pVLI~GE~GTGK~~lA~~ih~~s~r-~-~~~~v~i~c~~~~-~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA----QSDSTVLILGETGTGKELIARAIHNLSGR-N-NRRMVKMNCAAMP-AGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHhcCC-C-CCCeEEEecccCC-hhHhhhhhc
Confidence 468999888888877665432 12357899999999999999999875321 1 1123344544422 111111121
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHhCCCeEEEEEeCCCCCChhhHHHhhcc
Q 041190 210 QAAAGSADVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVWTNLCKP 258 (261)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~~~~~w~~l~~~ 258 (261)
........... ......+ -....=.|+||+|.....+....|...
T Consensus 449 g~~~~~~~g~~-~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~ 493 (686)
T PRK15429 449 GHERGAFTGAS-AQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRV 493 (686)
T ss_pred Ccccccccccc-cchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHH
Confidence 11111111111 1111112 112335689999988876666666543
No 330
>PRK10536 hypothetical protein; Provisional
Probab=96.06 E-value=0.015 Score=48.69 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=35.6
Q ss_pred CCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 129 EEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...+.++......+..+|.. ..++.+.|+.|+|||+||..+..+
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 34467788888888888854 248999999999999999988764
No 331
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.04 E-value=0.048 Score=51.42 Aligned_cols=117 Identities=18% Similarity=0.086 Sum_probs=73.2
Q ss_pred CCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccc------cccccceeEEEeeCCCCCHH
Q 041190 129 EEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAG------VKKYFSFRACAYVSEDFDAV 202 (261)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~------~~~~f~~~~wv~v~~~~~~~ 202 (261)
+..+-+|+.+..+|-+++...=. ....-+++.|.|.+|+|||..+..|.+..+ .-..| +.+.|+.-.-....
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~-~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f-~yveINgm~l~~~~ 472 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFIS-DQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKF-DYVEINGLRLASPR 472 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcC-CCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCc-cEEEEcceeecCHH
Confidence 34566799999999888866322 112345999999999999999999988532 11233 23344544445688
Q ss_pred HHHHHHHHHhcCCCC--CCCHHHHHHHHH-HHhCCCeEEEEEeCCCCC
Q 041190 203 GVTKVILQAAAGSAD--VNDLNLLQLQLE-NQLKNKKFLLVLDDMWSE 247 (261)
Q Consensus 203 ~i~~~i~~~l~~~~~--~~~~~~~~~~l~-~~l~~kr~LiVlDdvw~~ 247 (261)
+++..|...+..... ...++.+..++. ..-+.+..+|++|++...
T Consensus 473 ~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~L 520 (767)
T KOG1514|consen 473 EIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDIL 520 (767)
T ss_pred HHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHH
Confidence 889899888873322 223333333222 001245688898887654
No 332
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.04 E-value=0.012 Score=43.72 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=35.3
Q ss_pred CccccccchHHHHHHHhhCCCC-CCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDL-NSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~-~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..++|.+-..+.+++.|..--. ...+++=|++..|.+|+|||.+++.+.+.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 3577876666666665544111 13456789999999999999988777655
No 333
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.03 E-value=0.017 Score=54.09 Aligned_cols=50 Identities=18% Similarity=0.203 Sum_probs=39.6
Q ss_pred CCCCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 127 VDEEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.....++|......++++.+..-. ..-..|.|+|.+|+|||++|+.+++.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA----RSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCccHHHHHHHHHHh
Confidence 345679999999998888876532 12345789999999999999999876
No 334
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.03 E-value=0.049 Score=47.41 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=21.8
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+..++.++|++|+||||++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999888654
No 335
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.03 E-value=0.0052 Score=47.17 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=19.7
Q ss_pred EeEeecCCCChHHHHHHHhhcc
Q 041190 160 IPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 160 i~I~G~~GiGKTtLa~~v~~~~ 181 (261)
|.++|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998763
No 336
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.02 E-value=0.014 Score=46.53 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=20.8
Q ss_pred EEeEeecCCCChHHHHHHHhhcc
Q 041190 159 VIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
+|.|.|+.|+||||+++.+.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998763
No 337
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.01 E-value=0.0093 Score=47.25 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.3
Q ss_pred ceEEeEeecCCCChHHHHHHHhhcc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
-.++.|.|++|+|||||++.++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3678899999999999999999973
No 338
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=96.01 E-value=0.04 Score=46.81 Aligned_cols=93 Identities=24% Similarity=0.239 Sum_probs=68.1
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccccccceeEE-EeeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhCCC
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRAC-AYVSEDFDAVGVTKVILQAAAGSADVNDLNLLQLQLENQLKNK 235 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w-v~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k 235 (261)
-+...++|+.|+|||+-++.+++.. +..| +..++.++...+...+...+. .............+..++++.
T Consensus 94 g~l~~vyg~~g~gKt~a~~~y~~s~-------p~~~l~~~~p~~~a~~~i~~i~~~~~-~~~~~~~~d~~~~~~~~l~~~ 165 (297)
T COG2842 94 GSLVVVYGYAGLGKTQAAKNYAPSN-------PNALLIEADPSYTALVLILIICAAAF-GATDGTINDLTERLMIRLRDT 165 (297)
T ss_pred CceEEEeccccchhHHHHHhhcccC-------ccceeecCChhhHHHHHHHHHHHHHh-cccchhHHHHHHHHHHHHccC
Confidence 3488899999999999999998862 3455 456676776666666555444 223344556667777888999
Q ss_pred eEEEEEeCCCCCChhhHHHhhc
Q 041190 236 KFLLVLDDMWSENYDVWTNLCK 257 (261)
Q Consensus 236 r~LiVlDdvw~~~~~~w~~l~~ 257 (261)
.-+|+.|+-...-+..++.|+.
T Consensus 166 ~~~iivDEA~~L~~~ale~lr~ 187 (297)
T COG2842 166 VRLIIVDEADRLPYRALEELRR 187 (297)
T ss_pred cceeeeehhhccChHHHHHHHH
Confidence 9999999999988777777764
No 339
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.00 E-value=0.0063 Score=49.54 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=24.1
Q ss_pred CCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 154 GPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 154 ~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..++++|+++|..|+|||||.+.+.+.
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 447899999999999999999998775
No 340
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.00 E-value=0.015 Score=50.94 Aligned_cols=45 Identities=18% Similarity=0.113 Sum_probs=33.1
Q ss_pred cccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 132 VYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 132 ~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
++|.......+.+.+..-. ..-..|.|+|.+|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a----~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----PLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----CCCCCEEEECCCCChHHHHHHHHHHh
Confidence 3566666677776665532 23356799999999999999999875
No 341
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.00 E-value=0.0054 Score=50.79 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.8
Q ss_pred ceEEeEeecCCCChHHHHHHHh
Q 041190 157 FSVIPITGMGGLGKTTLAQLVF 178 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~ 178 (261)
--+++|+|++|+|||||.+.|.
T Consensus 29 GEfvsilGpSGcGKSTLLriiA 50 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIA 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3589999999999999999985
No 342
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.00 E-value=0.0083 Score=48.04 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.4
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...+|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3578999999999999999999875
No 343
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.99 E-value=0.0064 Score=45.71 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.9
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|..|+|||||.+.+...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 58999999999999999998765
No 344
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.99 E-value=0.0074 Score=50.39 Aligned_cols=57 Identities=26% Similarity=0.325 Sum_probs=40.9
Q ss_pred CCCCccccccchHH---HHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcccc
Q 041190 127 VDEEEVYGREKDKE---VIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGV 183 (261)
Q Consensus 127 ~~~~~~~gr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 183 (261)
..-.+++|.++.+. -|.+.|...+.=+.+.++.|..+|++|+|||-+|+.+.+..++
T Consensus 118 it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv 177 (368)
T COG1223 118 ITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV 177 (368)
T ss_pred ccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC
Confidence 33456888765553 3455565533224677899999999999999999999997543
No 345
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.99 E-value=0.0099 Score=50.53 Aligned_cols=64 Identities=20% Similarity=0.134 Sum_probs=41.1
Q ss_pred HHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHH
Q 041190 140 EVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKV 207 (261)
Q Consensus 140 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~ 207 (261)
.+|+..|... ..+..+|+|.|.||+||+||.-.+-.....+.+==.++=|.-|++++-..|+.+
T Consensus 38 ~~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 4555656553 346789999999999999998777665322222222344556666666555544
No 346
>PRK13947 shikimate kinase; Provisional
Probab=95.98 E-value=0.0055 Score=48.07 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.4
Q ss_pred EEeEeecCCCChHHHHHHHhhcc
Q 041190 159 VIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
-|.|+|++|+||||+++.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998763
No 347
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.041 Score=46.78 Aligned_cols=51 Identities=24% Similarity=0.117 Sum_probs=37.0
Q ss_pred CccccccchHHHHHHHhhCCCCC-------CCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLN-------SGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++-|.+.+..+|.+...-.-.. +-..++=+-+||.+|+|||.||+.|.|.
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANq 242 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQ 242 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcc
Confidence 35667888888888765432110 2234556778999999999999999997
No 348
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.97 E-value=0.05 Score=43.40 Aligned_cols=41 Identities=24% Similarity=0.233 Sum_probs=26.7
Q ss_pred eEEeEeecCCCChHHHHHHHhhcccccccc--------ceeEEEeeCCC
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYF--------SFRACAYVSED 198 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--------~~~~wv~v~~~ 198 (261)
.+..|+|++|+||||++..+....-....| ..+.|++...+
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 488999999999999998887653222222 13567776554
No 349
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.97 E-value=0.052 Score=52.54 Aligned_cols=99 Identities=16% Similarity=0.024 Sum_probs=62.8
Q ss_pred HHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCC---
Q 041190 139 KEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGS--- 215 (261)
Q Consensus 139 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~--- 215 (261)
...|-.+|... +-+.-+++-|+|++|+|||||+.+++... ...=...+|+...+.++.. .+++++-.
T Consensus 45 i~~LD~lLg~G---Gip~GsiteI~G~~GsGKTtLal~~~~~a--~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~ 114 (790)
T PRK09519 45 SIALDVALGIG---GLPRGRVIEIYGPESSGKTTVALHAVANA--QAAGGVAAFIDAEHALDPD-----YAKKLGVDTDS 114 (790)
T ss_pred cHHHHHhhcCC---CccCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchhHH-----HHHHcCCChhH
Confidence 44555666422 24567899999999999999997765432 1122346888888877743 45666511
Q ss_pred ---CCCCCHHHHHHHHHHHhC-CCeEEEEEeCCCCC
Q 041190 216 ---ADVNDLNLLQLQLENQLK-NKKFLLVLDDMWSE 247 (261)
Q Consensus 216 ---~~~~~~~~~~~~l~~~l~-~kr~LiVlDdvw~~ 247 (261)
..+...+.....+...++ ++--|||+|.|-..
T Consensus 115 llv~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~aL 150 (790)
T PRK09519 115 LLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAAL 150 (790)
T ss_pred eEEecCCCHHHHHHHHHHHhhcCCCeEEEEcchhhh
Confidence 123344555555666554 46778999998744
No 350
>PRK13975 thymidylate kinase; Provisional
Probab=95.96 E-value=0.0063 Score=48.84 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=21.8
Q ss_pred eEEeEeecCCCChHHHHHHHhhcc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.+|.|.|+.|+||||+++.+.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998874
No 351
>PRK09087 hypothetical protein; Validated
Probab=95.96 E-value=0.0065 Score=50.26 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=21.6
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+.+.|+|++|+|||+|++..++.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999998876
No 352
>PLN02200 adenylate kinase family protein
Probab=95.95 E-value=0.0073 Score=50.21 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=22.1
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...+|.|.|++|+||||+|+.+.+.
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~ 66 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVET 66 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999775
No 353
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.95 E-value=0.038 Score=49.80 Aligned_cols=86 Identities=19% Similarity=0.222 Sum_probs=47.7
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCC-CHHHHHHHHHHHhc-C-------CCCCCCHH-----
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDF-DAVGVTKVILQAAA-G-------SADVNDLN----- 222 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~i~~~i~~~l~-~-------~~~~~~~~----- 222 (261)
-..++|.|..|+|||||++.+.+..+ .+..+...+.+.. ...++...+...=. . ..+.....
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 34689999999999999998887532 1233344454432 23444443332211 0 11111111
Q ss_pred HHHHHHHHHh--CCCeEEEEEeCCCC
Q 041190 223 LLQLQLENQL--KNKKFLLVLDDMWS 246 (261)
Q Consensus 223 ~~~~~l~~~l--~~kr~LiVlDdvw~ 246 (261)
...-.+-+++ +++++|+++||+-.
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 1112233333 58999999999854
No 354
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.93 E-value=0.0085 Score=52.68 Aligned_cols=49 Identities=20% Similarity=0.284 Sum_probs=38.1
Q ss_pred CCCCCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 126 LVDEEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 126 ~~~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++-..++|.++-+..|...+.. +.++-+.|.|..|+||||+|+.+++-
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~------p~~~~vli~G~~GtGKs~~ar~~~~~ 61 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID------PKIGGVMIMGDRGTGKSTTIRALVDL 61 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC------CCCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 34556799999888887776643 35566679999999999999999664
No 355
>PLN02348 phosphoribulokinase
Probab=95.93 E-value=0.011 Score=52.57 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.8
Q ss_pred CCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 154 GPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 154 ~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++..+|+|.|.+|+||||+|+.+.+.
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999999875
No 356
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.93 E-value=0.0072 Score=43.71 Aligned_cols=21 Identities=43% Similarity=0.531 Sum_probs=19.4
Q ss_pred eEEeEeecCCCChHHHHHHHh
Q 041190 158 SVIPITGMGGLGKTTLAQLVF 178 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~ 178 (261)
..+.|.|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 678999999999999999976
No 357
>PRK08356 hypothetical protein; Provisional
Probab=95.93 E-value=0.0075 Score=48.59 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=19.0
Q ss_pred eEEeEeecCCCChHHHHHHH
Q 041190 158 SVIPITGMGGLGKTTLAQLV 177 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v 177 (261)
.+|.|+|++|+||||+|+.+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l 25 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFF 25 (195)
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 67999999999999999999
No 358
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.93 E-value=0.044 Score=49.77 Aligned_cols=89 Identities=18% Similarity=0.234 Sum_probs=53.6
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCC-CHHHHHHHHHHHhc-C-------CCCCCCHHH-----
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDF-DAVGVTKVILQAAA-G-------SADVNDLNL----- 223 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~i~~~i~~~l~-~-------~~~~~~~~~----- 223 (261)
.-++|.|.+|+|||||+..+...... ++=.+.+++-+++.. .+.+++.++...-. . ..+......
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~~~~-~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~ 222 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVAL 222 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHHHHh-cCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 45899999999999999998766322 122356677776654 34555555543211 1 111111111
Q ss_pred HHHHHHHHh---CCCeEEEEEeCCCCC
Q 041190 224 LQLQLENQL---KNKKFLLVLDDMWSE 247 (261)
Q Consensus 224 ~~~~l~~~l---~~kr~LiVlDdvw~~ 247 (261)
..-.+-+++ +++++|+++||+-.-
T Consensus 223 ~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 223 TGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 222355555 468999999999653
No 359
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.91 E-value=0.028 Score=52.25 Aligned_cols=86 Identities=19% Similarity=0.127 Sum_probs=48.8
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccccceeEE-EeeCCCCCHHHHHHHHHHHhc-----CCCCCCCH-----HHHHH
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRAC-AYVSEDFDAVGVTKVILQAAA-----GSADVNDL-----NLLQL 226 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w-v~v~~~~~~~~i~~~i~~~l~-----~~~~~~~~-----~~~~~ 226 (261)
.-..|+|++|+|||||++.|.+.... .+=++.++ +-|.+-+... .++-..+. ...+.... ..+.-
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEV---tdm~rsVkgeVVasT~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEV---TDMQRSVKGEVIASTFDRPPSDHTTVAELAI 492 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhH---HHHHHhccceEEEECCCCCHHHHHHHHHHHH
Confidence 35789999999999999999886321 23344443 3455533221 22333331 22222111 12223
Q ss_pred HHHHHh--CCCeEEEEEeCCCCC
Q 041190 227 QLENQL--KNKKFLLVLDDMWSE 247 (261)
Q Consensus 227 ~l~~~l--~~kr~LiVlDdvw~~ 247 (261)
.+-++| .++.+||+||++-..
T Consensus 493 ~~Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCchHH
Confidence 344444 689999999998543
No 360
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.91 E-value=0.034 Score=50.88 Aligned_cols=100 Identities=17% Similarity=0.038 Sum_probs=56.9
Q ss_pred cchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCC
Q 041190 136 EKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGS 215 (261)
Q Consensus 136 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~ 215 (261)
......|-++|.. +-..-.++.|.|.+|+|||||+.++..... ..-...+|++..+. ..++... ...++..
T Consensus 77 ~TGi~~LD~vLgG----Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a--~~g~kvlYvs~EEs--~~qi~~r-a~rlg~~ 147 (454)
T TIGR00416 77 SSGFGELDRVLGG----GIVPGSLILIGGDPGIGKSTLLLQVACQLA--KNQMKVLYVSGEES--LQQIKMR-AIRLGLP 147 (454)
T ss_pred ccCcHHHHHHhcC----CccCCeEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEECcCC--HHHHHHH-HHHcCCC
Confidence 3345566666643 234567999999999999999998865521 11123567765443 3333221 2233311
Q ss_pred ------CCCCCHHHHHHHHHHHhCCCeEEEEEeCCCCC
Q 041190 216 ------ADVNDLNLLQLQLENQLKNKKFLLVLDDMWSE 247 (261)
Q Consensus 216 ------~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~ 247 (261)
....+.+.+...+.+ .+.-++|+|.+-..
T Consensus 148 ~~~l~~~~e~~~~~I~~~i~~---~~~~~vVIDSIq~l 182 (454)
T TIGR00416 148 EPNLYVLSETNWEQICANIEE---ENPQACVIDSIQTL 182 (454)
T ss_pred hHHeEEcCCCCHHHHHHHHHh---cCCcEEEEecchhh
Confidence 123345555444433 35568999998643
No 361
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.90 E-value=0.0068 Score=47.89 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=21.0
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..|.|+|+.|+||||+++.+.+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 46999999999999999999876
No 362
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.89 E-value=0.063 Score=45.51 Aligned_cols=92 Identities=16% Similarity=0.163 Sum_probs=52.9
Q ss_pred eEEeEeecCCCChHHHH-HHHhhcccccccccee-EEEeeCCCCC-HHHHHHHHHHHhc-C-------CCCCCCHH----
Q 041190 158 SVIPITGMGGLGKTTLA-QLVFNDAGVKKYFSFR-ACAYVSEDFD-AVGVTKVILQAAA-G-------SADVNDLN---- 222 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~-~wv~v~~~~~-~~~i~~~i~~~l~-~-------~~~~~~~~---- 222 (261)
.-++|.|..|+|||+|| ..+.+.. +-+.. +++-+.+... ..+++.++...=. . ..+.....
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 45899999999999995 6665541 22334 5666766543 4555555543211 1 11111111
Q ss_pred -----HHHHHHHHHhCCCeEEEEEeCCCCCChhhHHHhh
Q 041190 223 -----LLQLQLENQLKNKKFLLVLDDMWSENYDVWTNLC 256 (261)
Q Consensus 223 -----~~~~~l~~~l~~kr~LiVlDdvw~~~~~~w~~l~ 256 (261)
.+.+.++. +++.+|+++||+-.-. ..|..+.
T Consensus 146 ~~~a~aiAE~fr~--~G~~Vlvl~DslTr~A-~A~rEis 181 (274)
T cd01132 146 PYTGCAMGEYFMD--NGKHALIIYDDLSKQA-VAYRQMS 181 (274)
T ss_pred HHHHHHHHHHHHH--CCCCEEEEEcChHHHH-HHHHHHH
Confidence 22333433 5899999999996652 4555543
No 363
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.88 E-value=0.036 Score=47.23 Aligned_cols=114 Identities=16% Similarity=0.219 Sum_probs=65.8
Q ss_pred CccccccchHHHHHHHhhCC-CCCCCCCceEEeEeecCCCChHHHHHHHhhcc---ccccccc--eeEEEeeCCCCCHHH
Q 041190 130 EEVYGREKDKEVIVGLLLGD-DLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA---GVKKYFS--FRACAYVSEDFDAVG 203 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~-~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---~~~~~f~--~~~wv~v~~~~~~~~ 203 (261)
..++|..--++.++..+..- ......++=+++.+|.+|+||..+++.+.++. ..+..|= .++-.+.++...++.
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~ 161 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIED 161 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHH
Confidence 34777665566666555431 00024567799999999999999999887763 1122220 011111222111111
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHh-CCCeEEEEEeCCCCCChhhHHHhhccc
Q 041190 204 VTKVILQAAAGSADVNDLNLLQLQLENQL-KNKKFLLVLDDMWSENYDVWTNLCKPF 259 (261)
Q Consensus 204 i~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~kr~LiVlDdvw~~~~~~w~~l~~~l 259 (261)
- -+++...+++.+ .-+|.|+|+|+|...-++..+.|++-|
T Consensus 162 Y----------------k~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfL 202 (344)
T KOG2170|consen 162 Y----------------KEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFL 202 (344)
T ss_pred H----------------HHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhh
Confidence 1 123344444444 347899999999998777777777654
No 364
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.88 E-value=0.0089 Score=46.95 Aligned_cols=26 Identities=35% Similarity=0.419 Sum_probs=23.3
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
++..+|...|.+|+||||+|..++..
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~ 46 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEK 46 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999876
No 365
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.86 E-value=0.045 Score=43.12 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.4
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+++.|.|.+|+||||+|..+...
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~ 24 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQ 24 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHH
Confidence 36899999999999999998765
No 366
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.83 E-value=0.019 Score=50.59 Aligned_cols=85 Identities=15% Similarity=0.138 Sum_probs=47.7
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCeE
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGSADVNDLNLLQLQLENQLKNKKF 237 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~ 237 (261)
..+.|.|++|+||||+++.+.+. +..+...+++. +.++.. ........-+.+.....+......-++..|+...=
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E--~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd 197 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIE--YVHRNKRSLINQREVGLDTLSFANALRAALREDPD 197 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChh--hhccCccceEEccccCCCCcCHHHHHHHhhccCCC
Confidence 68999999999999999998875 33333344432 222111 00000000000000111122344557778888888
Q ss_pred EEEEeCCCCC
Q 041190 238 LLVLDDMWSE 247 (261)
Q Consensus 238 LiVlDdvw~~ 247 (261)
.|++|++.+.
T Consensus 198 ~i~vgEird~ 207 (343)
T TIGR01420 198 VILIGEMRDL 207 (343)
T ss_pred EEEEeCCCCH
Confidence 9999999865
No 367
>COG3899 Predicted ATPase [General function prediction only]
Probab=95.83 E-value=0.031 Score=55.05 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=39.7
Q ss_pred cccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 132 VYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 132 ~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
++||+.+.+.|...+.+. ....-.++.+.|..|+|||+|+++|..-
T Consensus 2 l~GRe~ev~~Ll~~f~~v---~~g~~~~~lv~G~sGIGKsalv~ev~~~ 47 (849)
T COG3899 2 LYGRETELAQLLAAFDRV---SKGRGEVVLVAGESGIGKSALVNEVHKP 47 (849)
T ss_pred CCchHhHHHHHHHHHHHH---hCCCeEEEEEeecCCCcHHHHHHHHHHH
Confidence 689999999999988774 2345569999999999999999999876
No 368
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.82 E-value=0.0067 Score=47.10 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.6
Q ss_pred EEeEeecCCCChHHHHHHHhhcc
Q 041190 159 VIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
|++|+|+.|+|||||+..+....
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998863
No 369
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.82 E-value=0.02 Score=52.25 Aligned_cols=97 Identities=21% Similarity=0.108 Sum_probs=57.1
Q ss_pred hHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCC--
Q 041190 138 DKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGS-- 215 (261)
Q Consensus 138 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~-- 215 (261)
....|-++|.. +-..-.++.|.|.+|+|||||+.++..... ..-...+|++..+. ...+... .+.++..
T Consensus 65 Gi~~LD~~LgG----Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~ 135 (446)
T PRK11823 65 GIGELDRVLGG----GLVPGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEES--ASQIKLR-AERLGLPSD 135 (446)
T ss_pred CcHHHHHHhcC----CccCCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcccc--HHHHHHH-HHHcCCChh
Confidence 44566666643 234567999999999999999999877532 11124567765543 3333222 3444411
Q ss_pred ----CCCCCHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 041190 216 ----ADVNDLNLLQLQLENQLKNKKFLLVLDDMWS 246 (261)
Q Consensus 216 ----~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~ 246 (261)
....+.+.+...+.+ .+.-+||+|.+-.
T Consensus 136 ~l~~~~e~~l~~i~~~i~~---~~~~lVVIDSIq~ 167 (446)
T PRK11823 136 NLYLLAETNLEAILATIEE---EKPDLVVIDSIQT 167 (446)
T ss_pred cEEEeCCCCHHHHHHHHHh---hCCCEEEEechhh
Confidence 122345555554432 3566899999864
No 370
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.81 E-value=0.0077 Score=47.79 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=21.5
Q ss_pred eEEeEeecCCCChHHHHHHHhhcc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.++.|+|++|+|||||++.+....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999998753
No 371
>PRK13695 putative NTPase; Provisional
Probab=95.81 E-value=0.0094 Score=47.04 Aligned_cols=23 Identities=43% Similarity=0.434 Sum_probs=20.2
Q ss_pred EEeEeecCCCChHHHHHHHhhcc
Q 041190 159 VIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
-+.|+|.+|+|||||++.+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988763
No 372
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=95.79 E-value=0.033 Score=50.79 Aligned_cols=89 Identities=25% Similarity=0.227 Sum_probs=51.9
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccccc--eeEEEeeCCCCC-HHHHHHHHHHHhc-C-------CCCCCCHH----
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYFS--FRACAYVSEDFD-AVGVTKVILQAAA-G-------SADVNDLN---- 222 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~v~~~~~-~~~i~~~i~~~l~-~-------~~~~~~~~---- 222 (261)
.-++|.|-.|+|||||+..+.+.......+. ..+++-+++..+ ..+++.++...=. . ..+.....
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a 221 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVT 221 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHH
Confidence 3578899999999999999988643321111 456677766543 4455555543211 1 11111111
Q ss_pred -HHHHHHHHHh---CCCeEEEEEeCCCC
Q 041190 223 -LLQLQLENQL---KNKKFLLVLDDMWS 246 (261)
Q Consensus 223 -~~~~~l~~~l---~~kr~LiVlDdvw~ 246 (261)
...-.+-+++ +++++|+++||+-.
T Consensus 222 ~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 222 PRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 1122245555 47899999999954
No 373
>PRK04182 cytidylate kinase; Provisional
Probab=95.79 E-value=0.0079 Score=47.40 Aligned_cols=23 Identities=43% Similarity=0.638 Sum_probs=21.0
Q ss_pred EEeEeecCCCChHHHHHHHhhcc
Q 041190 159 VIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
+|.|.|+.|+||||+++.+.+..
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998763
No 374
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.011 Score=50.33 Aligned_cols=51 Identities=27% Similarity=0.277 Sum_probs=35.4
Q ss_pred CccccccchHHHHHHHhhCC-------CCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 130 EEVYGREKDKEVIVGLLLGD-------DLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~-------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
+++-|.+..++.|.+...-. .. ....-+-|.++|++|+||+.||+.|....
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEA 190 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEA 190 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhc
Confidence 34667777777777643221 00 12235678899999999999999998863
No 375
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.76 E-value=0.02 Score=45.36 Aligned_cols=36 Identities=22% Similarity=0.155 Sum_probs=25.0
Q ss_pred EeEeecCCCChHHHHHHHhhccccccccceeEEEeeCC
Q 041190 160 IPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSE 197 (261)
Q Consensus 160 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 197 (261)
+.|.|++|+|||+|+.++....- +.. ....|++...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~~g-~~v~~~s~e~ 37 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-ARG-EPGLYVTLEE 37 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-HCC-CcEEEEECCC
Confidence 57899999999999988765421 111 2356777655
No 376
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.76 E-value=0.024 Score=45.44 Aligned_cols=24 Identities=42% Similarity=0.470 Sum_probs=21.6
Q ss_pred eEEeEeecCCCChHHHHHHHhhcc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.+|.|.|..|+||||+++.+.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998763
No 377
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.76 E-value=0.018 Score=54.96 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.7
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+-+.++|++|+|||++|+.+.+.
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~ 208 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGE 208 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 34889999999999999999876
No 378
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.76 E-value=0.027 Score=52.37 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=40.0
Q ss_pred CCCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 128 DEEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
....++|.......+.+.+..-. ..-..|.|+|.+|+|||++|+.+++.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a----~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA----ASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 34568999999999888887643 23457899999999999999999876
No 379
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.052 Score=45.20 Aligned_cols=59 Identities=22% Similarity=0.103 Sum_probs=39.8
Q ss_pred ccc-ccchHHHHHHHhhCCCCC-------CCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCC
Q 041190 132 VYG-REKDKEVIVGLLLGDDLN-------SGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSE 197 (261)
Q Consensus 132 ~~g-r~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 197 (261)
++| .+.+..+|.+.+.-.-.. +-.+++=+.++|++|.|||.||+.|+++. +.-++.||+
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-------~c~firvsg 214 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSG 214 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEech
Confidence 444 577777777665432100 22356678899999999999999999872 234567776
No 380
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.74 E-value=0.048 Score=49.48 Aligned_cols=86 Identities=16% Similarity=0.259 Sum_probs=47.8
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCC-CHHHHHHHHHHHhc-C-------CCCCCCHHH----
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDF-DAVGVTKVILQAAA-G-------SADVNDLNL---- 223 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~i~~~i~~~l~-~-------~~~~~~~~~---- 223 (261)
-..++|.|..|+|||||++.+...... +....+-+.+.. ...++...+...-+ . ..+......
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~~~~----d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARGTQC----DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 457899999999999999999875322 223333344322 33444444433211 0 111111111
Q ss_pred -HHHHHHHHh--CCCeEEEEEeCCCC
Q 041190 224 -LQLQLENQL--KNKKFLLVLDDMWS 246 (261)
Q Consensus 224 -~~~~l~~~l--~~kr~LiVlDdvw~ 246 (261)
..-.+-+++ +++++|+++||+-.
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 112233444 58999999999854
No 381
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.73 E-value=0.0086 Score=48.63 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=21.1
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.|+.|+|++|+|||||.+.+..=
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 458999999999999999998653
No 382
>PLN02796 D-glycerate 3-kinase
Probab=95.73 E-value=0.0095 Score=52.05 Aligned_cols=25 Identities=36% Similarity=0.236 Sum_probs=22.8
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+.-+|+|.|..|+|||||++.+..-
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~l 123 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYL 123 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 5678999999999999999999876
No 383
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=95.72 E-value=0.033 Score=45.78 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=21.2
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+|+|.|+.|+||||+++.+...
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~ 25 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEK 25 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999875
No 384
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.70 E-value=0.13 Score=43.52 Aligned_cols=50 Identities=22% Similarity=0.105 Sum_probs=31.7
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHH
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVIL 209 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~ 209 (261)
-.++.|.|.+|+||||++.++....- ..+=..+.|++... +..++...+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~ 79 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLL 79 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHH
Confidence 45888999999999999998866521 11112466777655 3334444443
No 385
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.69 E-value=0.0087 Score=49.21 Aligned_cols=22 Identities=36% Similarity=0.532 Sum_probs=19.8
Q ss_pred eEEeEeecCCCChHHHHHHHhh
Q 041190 158 SVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
.+++|+|++|+|||||...+..
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999998853
No 386
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.68 E-value=0.014 Score=54.41 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=23.3
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+..+|+|.|++|+||||||+.+...
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 35789999999999999999999765
No 387
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.67 E-value=0.0084 Score=47.92 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=19.5
Q ss_pred EeEeecCCCChHHHHHHHhhc
Q 041190 160 IPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 160 i~I~G~~GiGKTtLa~~v~~~ 180 (261)
|.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999876
No 388
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.66 E-value=0.0074 Score=47.02 Aligned_cols=21 Identities=43% Similarity=0.425 Sum_probs=17.3
Q ss_pred EeEeecCCCChHHHHHHHhhc
Q 041190 160 IPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 160 i~I~G~~GiGKTtLa~~v~~~ 180 (261)
|.|+|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999865
No 389
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.66 E-value=0.0089 Score=46.56 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.9
Q ss_pred ceEEeEeecCCCChHHHHHHHhhcc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.++++|+|..++|||||...+....
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L 26 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKL 26 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHH
Confidence 4799999999999999999996653
No 390
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.66 E-value=0.11 Score=45.44 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=22.8
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+..+|+|.|.+|+|||||+..+...
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999987665
No 391
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.032 Score=49.58 Aligned_cols=100 Identities=22% Similarity=0.143 Sum_probs=61.0
Q ss_pred ccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhc-
Q 041190 135 REKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAA- 213 (261)
Q Consensus 135 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~- 213 (261)
......++-..|... --.-+++.|-|-+|+|||||.-++..+...+ - ...+|+-.+.....++ -.++++
T Consensus 75 i~tg~~EldRVLGGG----~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~--~-~vLYVsGEES~~Qikl---RA~RL~~ 144 (456)
T COG1066 75 ISTGIEELDRVLGGG----LVPGSVILIGGDPGIGKSTLLLQVAARLAKR--G-KVLYVSGEESLQQIKL---RADRLGL 144 (456)
T ss_pred ccCChHHHHhhhcCC----cccccEEEEccCCCCCHHHHHHHHHHHHHhc--C-cEEEEeCCcCHHHHHH---HHHHhCC
Confidence 344566666666542 2245799999999999999999998873222 2 4555554443332222 244555
Q ss_pred CCC-----CCCCHHHHHHHHHHHhCCCeEEEEEeCCCCC
Q 041190 214 GSA-----DVNDLNLLQLQLENQLKNKKFLLVLDDMWSE 247 (261)
Q Consensus 214 ~~~-----~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~ 247 (261)
... ...+.+.+.+.+.+ .+.-|+|+|.+...
T Consensus 145 ~~~~l~l~aEt~~e~I~~~l~~---~~p~lvVIDSIQT~ 180 (456)
T COG1066 145 PTNNLYLLAETNLEDIIAELEQ---EKPDLVVIDSIQTL 180 (456)
T ss_pred CccceEEehhcCHHHHHHHHHh---cCCCEEEEecccee
Confidence 221 23455555554443 68899999998654
No 392
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.65 E-value=0.01 Score=46.39 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.4
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...+.|+|++|+|||||.+.+...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 456899999999999999999875
No 393
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.65 E-value=0.0099 Score=46.45 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=20.4
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+|.|.|+.|+||||+|+.+.+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~ 23 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEK 23 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999775
No 394
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.65 E-value=0.011 Score=44.08 Aligned_cols=26 Identities=35% Similarity=0.565 Sum_probs=17.8
Q ss_pred EeEeecCCCChHHHHHHHhhcccccccc
Q 041190 160 IPITGMGGLGKTTLAQLVFNDAGVKKYF 187 (261)
Q Consensus 160 i~I~G~~GiGKTtLa~~v~~~~~~~~~f 187 (261)
+-+.|.+|+||||+|+.+... ....|
T Consensus 2 vLleg~PG~GKT~la~~lA~~--~~~~f 27 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS--LGLSF 27 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH--TT--E
T ss_pred EeeECCCccHHHHHHHHHHHH--cCCce
Confidence 578999999999999999887 44445
No 395
>PRK15453 phosphoribulokinase; Provisional
Probab=95.64 E-value=0.011 Score=50.16 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=21.9
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+..+|+|.|.+|+||||+++.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~i 28 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKI 28 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999988753
No 396
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.054 Score=51.92 Aligned_cols=97 Identities=23% Similarity=0.227 Sum_probs=54.1
Q ss_pred ccccccc---hHHHHHHHhhCCCC---CCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHH
Q 041190 131 EVYGREK---DKEVIVGLLLGDDL---NSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGV 204 (261)
Q Consensus 131 ~~~gr~~---~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i 204 (261)
++-|-++ ++++++++|.+.+. -+-.-++=+-++|++|+|||-||+.+.-...+ -++++|.+
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~svSGS------ 378 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSVSGS------ 378 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC-------ceeeechH------
Confidence 4666654 45555566655320 01223455789999999999999999986443 34555552
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHH-HHHhCCCeEEEEEeCCCCC
Q 041190 205 TKVILQAAAGSADVNDLNLLQLQL-ENQLKNKKFLLVLDDMWSE 247 (261)
Q Consensus 205 ~~~i~~~l~~~~~~~~~~~~~~~l-~~~l~~kr~LiVlDdvw~~ 247 (261)
+..+.+.. .. ....+.+ ...=.+..++|.+|++..-
T Consensus 379 --EFvE~~~g---~~--asrvr~lf~~ar~~aP~iifideida~ 415 (774)
T KOG0731|consen 379 --EFVEMFVG---VG--ASRVRDLFPLARKNAPSIIFIDEIDAV 415 (774)
T ss_pred --HHHHHhcc---cc--hHHHHHHHHHhhccCCeEEEecccccc
Confidence 22222220 00 1111122 2222456789999988654
No 397
>PRK06761 hypothetical protein; Provisional
Probab=95.63 E-value=0.021 Score=48.65 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=22.1
Q ss_pred eEEeEeecCCCChHHHHHHHhhcc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
++|.|.|++|+||||+++.+.+..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999874
No 398
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.62 E-value=0.011 Score=43.07 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=19.4
Q ss_pred EeEeecCCCChHHHHHHHhhc
Q 041190 160 IPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 160 i~I~G~~GiGKTtLa~~v~~~ 180 (261)
|+|.|++|+|||||.+.+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 689999999999999999974
No 399
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.62 E-value=0.022 Score=48.69 Aligned_cols=26 Identities=27% Similarity=0.228 Sum_probs=23.9
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+..++.|.|.+|+|||||...+.+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999886
No 400
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=95.61 E-value=0.064 Score=48.55 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.6
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-..++|.|..|+|||||++.+...
T Consensus 157 Gq~~~i~G~sG~GKStLl~~i~~~ 180 (434)
T PRK08472 157 GQKLGIFAGSGVGKSTLMGMIVKG 180 (434)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc
Confidence 458899999999999999999875
No 401
>PRK14532 adenylate kinase; Provisional
Probab=95.61 E-value=0.0091 Score=47.66 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=19.2
Q ss_pred EeEeecCCCChHHHHHHHhhc
Q 041190 160 IPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 160 i~I~G~~GiGKTtLa~~v~~~ 180 (261)
|.+.|++|+||||+|+.+.+.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 778999999999999999775
No 402
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.60 E-value=0.011 Score=46.04 Aligned_cols=24 Identities=38% Similarity=0.672 Sum_probs=21.2
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++.|+|.+|+||||+.+.+-..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 579999999999999999877665
No 403
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.60 E-value=0.011 Score=49.69 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.6
Q ss_pred CceEEeEeecCCCChHHHHHHHhh
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
.-.+++|.|+.|+|||||.+.++.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999976
No 404
>PRK06820 type III secretion system ATPase; Validated
Probab=95.60 E-value=0.08 Score=48.01 Aligned_cols=83 Identities=22% Similarity=0.262 Sum_probs=47.0
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhc--C----------CCCCCCHHH--
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAA--G----------SADVNDLNL-- 223 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~--~----------~~~~~~~~~-- 223 (261)
..++|+|.+|+|||||++.+.... +-+..+..-+..... + ...+.+... . ..+......
T Consensus 164 qri~I~G~sG~GKStLl~~I~~~~----~~dv~V~~~iGergr--E-v~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~ 236 (440)
T PRK06820 164 QRIGIFAAAGVGKSTLLGMLCADS----AADVMVLALIGERGR--E-VREFLEQVLTPEARARTVVVVATSDRPALERLK 236 (440)
T ss_pred CEEEEECCCCCChHHHHHHHhccC----CCCEEEEEEEccChH--H-HHHHHHHhhccCCceeEEEEEeCCCCCHHHHHH
Confidence 468999999999999999988752 223344455555422 2 333333322 1 111111111
Q ss_pred ---HHHHHHHHh--CCCeEEEEEeCCCCC
Q 041190 224 ---LQLQLENQL--KNKKFLLVLDDMWSE 247 (261)
Q Consensus 224 ---~~~~l~~~l--~~kr~LiVlDdvw~~ 247 (261)
..-.+-+++ +++++|+++||+-.-
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~Dsltr~ 265 (440)
T PRK06820 237 GLSTATTIAEYFRDRGKKVLLMADSLTRY 265 (440)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchhHH
Confidence 112234444 589999999999553
No 405
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.59 E-value=0.01 Score=48.59 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.2
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||++.+..-
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 358999999999999999999754
No 406
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.59 E-value=0.017 Score=47.17 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=29.4
Q ss_pred EEeEeecCCCChHHHHHHHhhccc-----cccccceeEEEeeCCCCCHHHHHHHHHH
Q 041190 159 VIPITGMGGLGKTTLAQLVFNDAG-----VKKYFSFRACAYVSEDFDAVGVTKVILQ 210 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~~~-----~~~~f~~~~wv~v~~~~~~~~i~~~i~~ 210 (261)
+..|.|++|+||||++..+....- ....-...+-+.......+..++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 788999999999986666655420 0122233444444444566666666665
No 407
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.58 E-value=0.02 Score=46.52 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=56.1
Q ss_pred ccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEe--e--CCC--CCHHH---
Q 041190 133 YGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAY--V--SED--FDAVG--- 203 (261)
Q Consensus 133 ~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~--v--~~~--~~~~~--- 203 (261)
.++..+....++.|.. ..++.+.|+.|+|||.||-...-+.-....|+..+++. + .+. +-...
T Consensus 3 ~p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~e 74 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEE 74 (205)
T ss_dssp ---SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS------
T ss_pred cCCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHH
Confidence 3455666667777763 35899999999999999987765543345676666553 1 111 00011
Q ss_pred ----HHHHHHHHhcCCCCCCCHHHHHHH------HHHHhCCC---eEEEEEeCCCCCChhhHHHhh
Q 041190 204 ----VTKVILQAAAGSADVNDLNLLQLQ------LENQLKNK---KFLLVLDDMWSENYDVWTNLC 256 (261)
Q Consensus 204 ----i~~~i~~~l~~~~~~~~~~~~~~~------l~~~l~~k---r~LiVlDdvw~~~~~~w~~l~ 256 (261)
.+.-+.+.+..-......+.+... --.+++|. ..+|++|+..|.+++.+..+.
T Consensus 75 K~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~il 140 (205)
T PF02562_consen 75 KMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMIL 140 (205)
T ss_dssp ---TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHH
Confidence 111122222211122233332211 12234454 479999999999888887654
No 408
>PRK13948 shikimate kinase; Provisional
Probab=95.58 E-value=0.013 Score=46.77 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=22.3
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
....|.++|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578899999999999999999876
No 409
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.56 E-value=0.0088 Score=50.13 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.5
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.|.++|++|+||||+|+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3689999999999999999765
No 410
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.56 E-value=0.1 Score=43.24 Aligned_cols=41 Identities=17% Similarity=0.045 Sum_probs=27.2
Q ss_pred CceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCC
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSE 197 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 197 (261)
.-.++.|.|.+|+|||+++.++..+.-.... ....|++...
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g-~~vly~s~E~ 52 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQG-KPVLFFSLEM 52 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CceEEEeCCC
Confidence 3468999999999999999887655221111 2355665443
No 411
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=95.56 E-value=0.011 Score=47.81 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.3
Q ss_pred ceEEeEeecCCCChHHHHHHHhh
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
..+|+++|+.|+||||+|+..-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999997755
No 412
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.56 E-value=0.072 Score=48.41 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.9
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+-..++|+|..|+|||||++.+...
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~ 181 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARN 181 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999988875
No 413
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=95.55 E-value=0.077 Score=48.18 Aligned_cols=89 Identities=24% Similarity=0.278 Sum_probs=52.5
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccc------------cccceeEEEeeCCCCCHHHHHHHHHHHhc-C--------CC
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVK------------KYFSFRACAYVSEDFDAVGVTKVILQAAA-G--------SA 216 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~------------~~f~~~~wv~v~~~~~~~~i~~~i~~~l~-~--------~~ 216 (261)
.-++|.|-+|+|||||+..+.+..+.. +.| ..+++-+++.....+.+.+.+...+ - ..
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~-v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ats 220 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNF-AIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLA 220 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCce-EEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECC
Confidence 357889999999999999988764310 111 4566677776555554444444433 1 11
Q ss_pred CCCCHHH-----HHHHHHHHhC---CCeEEEEEeCCCCC
Q 041190 217 DVNDLNL-----LQLQLENQLK---NKKFLLVLDDMWSE 247 (261)
Q Consensus 217 ~~~~~~~-----~~~~l~~~l~---~kr~LiVlDdvw~~ 247 (261)
+...... ..-.+-++++ ++++|+++||+-.-
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 1111111 1222455554 69999999999553
No 414
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.55 E-value=0.011 Score=50.87 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.7
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+|.++|++|+||||+|+.+.+.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~ 25 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAK 25 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 57888999999999999998775
No 415
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.55 E-value=0.073 Score=47.98 Aligned_cols=87 Identities=18% Similarity=0.219 Sum_probs=48.0
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCC-CHHHHHHHHHHHhc--------CCCCCCCHH-----
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDF-DAVGVTKVILQAAA--------GSADVNDLN----- 222 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~i~~~i~~~l~--------~~~~~~~~~----- 222 (261)
-..++|+|..|+|||||++.+.+..+. +.....-+.+.. ...++..+.+.+-+ ...+.....
T Consensus 137 Gqri~I~G~sG~GKTtLl~~i~~~~~~----~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~~ 212 (413)
T TIGR03497 137 GQRVGIFAGSGVGKSTLLGMIARNAKA----DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAA 212 (413)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHH
Confidence 457999999999999999988875321 222223344332 33444444333211 111211111
Q ss_pred HHHHHHHHHh--CCCeEEEEEeCCCCC
Q 041190 223 LLQLQLENQL--KNKKFLLVLDDMWSE 247 (261)
Q Consensus 223 ~~~~~l~~~l--~~kr~LiVlDdvw~~ 247 (261)
...-.+-+++ +++++|+++||+-.-
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dsltr~ 239 (413)
T TIGR03497 213 FTATAIAEYFRDQGKDVLLMMDSVTRF 239 (413)
T ss_pred HHHHHHHHHHHHCCCCEEEEEcCcHHH
Confidence 1112233444 589999999999654
No 416
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.54 E-value=0.012 Score=45.79 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=21.2
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+++.|+|..|+|||||+..+...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999875
No 417
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.54 E-value=0.073 Score=48.14 Aligned_cols=87 Identities=20% Similarity=0.248 Sum_probs=49.6
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCC-CCHHHHHHHHHHHhc-C-------CCCCCCH-----H
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSED-FDAVGVTKVILQAAA-G-------SADVNDL-----N 222 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~i~~~i~~~l~-~-------~~~~~~~-----~ 222 (261)
-..++|+|..|+|||||++.++...+. +.....-+.+. ....+++...+..-+ . ..+.... .
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~~----~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAKA----DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCCC----CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 357899999999999999999876322 11222223332 455556555544422 1 1111111 1
Q ss_pred HHHHHHHHHh--CCCeEEEEEeCCCCC
Q 041190 223 LLQLQLENQL--KNKKFLLVLDDMWSE 247 (261)
Q Consensus 223 ~~~~~l~~~l--~~kr~LiVlDdvw~~ 247 (261)
.....+-+++ +++..||++||+-+-
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 1122233333 589999999999665
No 418
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.54 E-value=0.037 Score=52.48 Aligned_cols=73 Identities=16% Similarity=0.121 Sum_probs=45.5
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcccccc-ccceeEEEeeCCCCCHHHHHHHH
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKK-YFSFRACAYVSEDFDAVGVTKVI 208 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~wv~v~~~~~~~~i~~~i 208 (261)
..++|.++.++.+...+... ..+-++|++|+||||+++.+.+. ... .|...+++.=+. .+...+++.+
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~--l~~~~~~~~~~~~n~~-~~~~~~~~~v 86 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAEL--LPDEELEDILVYPNPE-DPNMPRIVEV 86 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHH--cCchhheeEEEEeCCC-CCchHHHHHH
Confidence 45788887777777766542 24458999999999999999876 332 233233222221 2344556666
Q ss_pred HHHhc
Q 041190 209 LQAAA 213 (261)
Q Consensus 209 ~~~l~ 213 (261)
...++
T Consensus 87 ~~~~g 91 (608)
T TIGR00764 87 PAGEG 91 (608)
T ss_pred HHhhc
Confidence 65554
No 419
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.54 E-value=0.011 Score=48.14 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=21.3
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||++.+..-
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999754
No 420
>PRK13946 shikimate kinase; Provisional
Probab=95.53 E-value=0.01 Score=47.29 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=22.1
Q ss_pred ceEEeEeecCCCChHHHHHHHhhcc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.+.|.+.|++|+||||+++.+.+..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998763
No 421
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.52 E-value=0.019 Score=45.82 Aligned_cols=23 Identities=39% Similarity=0.403 Sum_probs=20.9
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+.|+|++|+||||+++.+..-
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999998765
No 422
>PRK01184 hypothetical protein; Provisional
Probab=95.52 E-value=0.0097 Score=47.32 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=18.4
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+|.++|++|+||||+++ +...
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~ 23 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IARE 23 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHH
Confidence 479999999999999987 4443
No 423
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.52 E-value=0.061 Score=45.43 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.5
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+|+|.|.+|+||||+++.+.+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~ 22 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHI 22 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988754
No 424
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.50 E-value=0.011 Score=48.25 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.2
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||++.+..-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999764
No 425
>PLN02165 adenylate isopentenyltransferase
Probab=95.48 E-value=0.012 Score=51.11 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=22.1
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.-.++.|+|++|+||||||..+...
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~ 66 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATR 66 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH
Confidence 4458999999999999999998776
No 426
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.47 E-value=0.033 Score=49.87 Aligned_cols=67 Identities=18% Similarity=0.174 Sum_probs=45.7
Q ss_pred ccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHH-HHHhhccccccccceeEEEeeCC---CCCHHHHHHHHHH
Q 041190 135 REKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLA-QLVFNDAGVKKYFSFRACAYVSE---DFDAVGVTKVILQ 210 (261)
Q Consensus 135 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~~wv~v~~---~~~~~~i~~~i~~ 210 (261)
|.+..++|..||... .-.+|.|.||.|+||+.|+ .++.++.+- +..+.|.+ ..+-..++..+..
T Consensus 1 R~e~~~~L~~wL~e~------~~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN------PNTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcC------CCeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHH
Confidence 456789999999764 3469999999999999999 888876332 33343322 2334555666666
Q ss_pred Hhc
Q 041190 211 AAA 213 (261)
Q Consensus 211 ~l~ 213 (261)
++|
T Consensus 69 qvG 71 (431)
T PF10443_consen 69 QVG 71 (431)
T ss_pred hcC
Confidence 655
No 427
>PF13245 AAA_19: Part of AAA domain
Probab=95.47 E-value=0.014 Score=39.45 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=16.9
Q ss_pred eEEeEeecCCCChHH-HHHHHhhc
Q 041190 158 SVIPITGMGGLGKTT-LAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTt-La~~v~~~ 180 (261)
+++.|.|++|+|||+ +++.+..-
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 577889999999995 55554443
No 428
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.47 E-value=0.012 Score=46.70 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.5
Q ss_pred ceEEeEeecCCCChHHHHHHHhh
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 35899999999999999999864
No 429
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.46 E-value=0.012 Score=47.09 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.7
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.|+.|+|||||.+.+..-
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998754
No 430
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.46 E-value=0.015 Score=48.46 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=17.3
Q ss_pred EeecCCCChHHHHHHHhhcc
Q 041190 162 ITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 162 I~G~~GiGKTtLa~~v~~~~ 181 (261)
|+||+|+||||+++.+.+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~ 20 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL 20 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999998764
No 431
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.44 E-value=0.013 Score=47.76 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=22.1
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.. .+++|+|+.|+|||||++.+..-
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCC
Confidence 35 89999999999999999999754
No 432
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.44 E-value=0.024 Score=45.74 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=20.5
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
++..|.|++|+||||+++.+...
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~ 41 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEA 41 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHH
T ss_pred eEEEEEECCCCCHHHHHHHHHHH
Confidence 57888999999999999998765
No 433
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.43 E-value=0.012 Score=46.10 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.9
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.|.|+|++|+||||+++.+.+.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~ 25 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQA 25 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999999775
No 434
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.43 E-value=0.0083 Score=45.46 Aligned_cols=45 Identities=24% Similarity=0.214 Sum_probs=29.6
Q ss_pred ccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 133 YGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 133 ~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
+|.-....++.+.+..-. ..-..|.|+|.+|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 355555556665554421 123567999999999999999998863
No 435
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.42 E-value=0.011 Score=46.94 Aligned_cols=21 Identities=43% Similarity=0.585 Sum_probs=19.2
Q ss_pred EEeEeecCCCChHHHHHHHhh
Q 041190 159 VIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~ 179 (261)
+|+|+|..|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999866
No 436
>PRK14531 adenylate kinase; Provisional
Probab=95.42 E-value=0.013 Score=46.72 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=20.0
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.|.|+|++|+||||+++.+...
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999776
No 437
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.40 E-value=0.013 Score=48.65 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.9
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|+.|+|||||++.+..-
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999754
No 438
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.40 E-value=0.013 Score=46.36 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.2
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|.|+.|+|||||++.+..-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999754
No 439
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=95.39 E-value=0.061 Score=48.70 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=21.4
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-..++|.|..|+|||||++.+...
T Consensus 155 GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 155 GQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred ceEEEEECCCCCCccHHHHHHhcc
Confidence 457999999999999999998875
No 440
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.36 E-value=0.013 Score=47.96 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=21.0
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|+.|+|||||++.+..-
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999764
No 441
>COG4240 Predicted kinase [General function prediction only]
Probab=95.36 E-value=0.071 Score=43.76 Aligned_cols=79 Identities=18% Similarity=0.141 Sum_probs=44.2
Q ss_pred CceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhc------CCCCCCCHHHHHHHHH
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAA------GSADVNDLNLLQLQLE 229 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~------~~~~~~~~~~~~~~l~ 229 (261)
++-+++|+|+.|+||||++-.+++...-+.. ......++..-+-...=.-.++++.. +....+|..-....+.
T Consensus 49 rPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVLn 127 (300)
T COG4240 49 RPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVLN 127 (300)
T ss_pred CceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHHH
Confidence 4779999999999999999999987433322 23344443332111111122333321 2234556655556666
Q ss_pred HHhCCC
Q 041190 230 NQLKNK 235 (261)
Q Consensus 230 ~~l~~k 235 (261)
...+++
T Consensus 128 ai~~g~ 133 (300)
T COG4240 128 AIARGG 133 (300)
T ss_pred HHhcCC
Confidence 555555
No 442
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=95.35 E-value=0.11 Score=47.49 Aligned_cols=92 Identities=16% Similarity=0.202 Sum_probs=52.8
Q ss_pred eEEeEeecCCCChHHHH-HHHhhcccccccccee-EEEeeCCCC-CHHHHHHHHHHHhc-C-------CCCCCCHH----
Q 041190 158 SVIPITGMGGLGKTTLA-QLVFNDAGVKKYFSFR-ACAYVSEDF-DAVGVTKVILQAAA-G-------SADVNDLN---- 222 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~-~wv~v~~~~-~~~~i~~~i~~~l~-~-------~~~~~~~~---- 222 (261)
.-++|.|..|+|||+|| ..+.+.. .-+.. +++-+++.. ...++...+...=. . ..+.....
T Consensus 142 QR~~I~g~~g~GKt~Lal~~I~~q~----~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~a 217 (485)
T CHL00059 142 QRELIIGDRQTGKTAVATDTILNQK----GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLA 217 (485)
T ss_pred CEEEeecCCCCCHHHHHHHHHHhcc----cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHH
Confidence 35789999999999995 5555542 23334 677777654 34455555443211 1 11111111
Q ss_pred -----HHHHHHHHHhCCCeEEEEEeCCCCCChhhHHHhh
Q 041190 223 -----LLQLQLENQLKNKKFLLVLDDMWSENYDVWTNLC 256 (261)
Q Consensus 223 -----~~~~~l~~~l~~kr~LiVlDdvw~~~~~~w~~l~ 256 (261)
.+...++. +++++|+|+||+-.-. ..|.++.
T Consensus 218 p~~a~aiAEyfr~--~G~~VLlv~DdlTr~A-~A~REis 253 (485)
T CHL00059 218 PYTGAALAEYFMY--RGRHTLIIYDDLSKQA-QAYRQMS 253 (485)
T ss_pred HHHHhhHHHHHHH--cCCCEEEEEcChhHHH-HHHHHHH
Confidence 12333333 5899999999997653 4555543
No 443
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.35 E-value=0.018 Score=45.85 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=22.4
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...++.+.|.+|+||||+|+.+...
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999875
No 444
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.35 E-value=0.012 Score=50.20 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.8
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+++|.|.+|+|||||++.+..-
T Consensus 1 iigI~G~sGsGKSTl~~~L~~l 22 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSL 22 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999854
No 445
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=95.34 E-value=0.012 Score=47.85 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.2
Q ss_pred eEEeEeecCCCChHHHHHHHhhcc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.-|.|+|++|+|||||+..+.++.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 468899999999999999998764
No 446
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=95.34 E-value=0.014 Score=44.94 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.4
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-|.++|.+|+|||||++.+.+.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999765
No 447
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.34 E-value=0.014 Score=49.66 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=22.1
Q ss_pred eEEeEeecCCCChHHHHHHHhhccc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAG 182 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~ 182 (261)
++|+|+|.+|+|||||+..+....+
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~ 26 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLS 26 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999988743
No 448
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.34 E-value=0.014 Score=47.47 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.4
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999764
No 449
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.33 E-value=0.016 Score=44.30 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.0
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...|+++|.+|+|||||.+.+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999998654
No 450
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.33 E-value=0.014 Score=47.82 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=21.0
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|+.|+|||||++.++.-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999764
No 451
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.33 E-value=0.013 Score=46.46 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=21.5
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||.+.+..-
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 358999999999999999999764
No 452
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.33 E-value=0.014 Score=48.65 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.1
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||++.+..-
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998753
No 453
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.33 E-value=0.026 Score=53.02 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=31.7
Q ss_pred cccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 132 VYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 132 ~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.+.|.+-.+.|.+..-. ...+..+|.++|++|+||||+|+.+....
T Consensus 371 ~f~rpeV~~iL~~~~~~----r~~~g~~Ivl~Gl~GSGKSTia~~La~~L 416 (568)
T PRK05537 371 WFSFPEVVAELRRTYPP----RHKQGFTVFFTGLSGAGKSTIAKALMVKL 416 (568)
T ss_pred hhcHHHHHHHHHHHhcc----ccCCCeEEEEECCCCChHHHHHHHHHHHh
Confidence 33455545544444332 33455689999999999999999998763
No 454
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.32 E-value=0.014 Score=48.53 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.0
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999753
No 455
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=95.32 E-value=0.16 Score=46.07 Aligned_cols=87 Identities=20% Similarity=0.230 Sum_probs=48.1
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCC-CCHHHHHHHHHHHhc-C-------CCCCCCHH-----
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSED-FDAVGVTKVILQAAA-G-------SADVNDLN----- 222 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~i~~~i~~~l~-~-------~~~~~~~~----- 222 (261)
-..++|.|.+|+|||||.+.+..... -+....+.+... .....+......... . ..+.....
T Consensus 145 Gq~~~I~G~sG~GKStLl~~I~~~~~----~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~~ 220 (422)
T TIGR02546 145 GQRIGIFAGAGVGKSTLLGMIARGAS----ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAA 220 (422)
T ss_pred CCEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHHH
Confidence 45789999999999999999987532 223333344432 234444433332211 0 11111111
Q ss_pred HHHHHHHHHh--CCCeEEEEEeCCCCC
Q 041190 223 LLQLQLENQL--KNKKFLLVLDDMWSE 247 (261)
Q Consensus 223 ~~~~~l~~~l--~~kr~LiVlDdvw~~ 247 (261)
.....+-+++ .+++.|+++|++-.-
T Consensus 221 ~~a~~~AE~f~~~g~~Vl~~~Dsltr~ 247 (422)
T TIGR02546 221 YTATAIAEYFRDQGKRVLLMMDSLTRF 247 (422)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCchHH
Confidence 1122234444 578999999999653
No 456
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.31 E-value=0.047 Score=48.51 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=22.7
Q ss_pred CceEEeEeecCCCChHHHHHHHhhcc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
....+.|.|.+|+|||+|.+.+.+..
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 34688999999999999999998873
No 457
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.1 Score=51.10 Aligned_cols=117 Identities=16% Similarity=0.079 Sum_probs=66.7
Q ss_pred cccccchHHHHHHHhhCCCCC-CC-CCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHH
Q 041190 132 VYGREKDKEVIVGLLLGDDLN-SG-PGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVIL 209 (261)
Q Consensus 132 ~~gr~~~~~~l~~~L~~~~~~-~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~ 209 (261)
++|.++.+..|.+.+...... .+ ...-.+.+.|+.|+|||.||+.+..- +-+.++.-+-+..|+- . ++.
T Consensus 564 V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriDmse~------~-evs 634 (898)
T KOG1051|consen 564 VIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLDMSEF------Q-EVS 634 (898)
T ss_pred ccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEechhhh------h-hhh
Confidence 566677777777776654310 11 25667888999999999999988765 3222333344444441 1 122
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHhCCCe-EEEEEeCCCCCChhhHHHhhcc
Q 041190 210 QAAAGSADVNDLNLLQLQLENQLKNKK-FLLVLDDMWSENYDVWTNLCKP 258 (261)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~l~~~l~~kr-~LiVlDdvw~~~~~~w~~l~~~ 258 (261)
+.++.++. ---.+--..|.+.++.+. .+|+||||....+.....|..+
T Consensus 635 kligsp~g-yvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~ 683 (898)
T KOG1051|consen 635 KLIGSPPG-YVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQL 683 (898)
T ss_pred hccCCCcc-cccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHH
Confidence 23331110 000111235666676654 5778899998877666655443
No 458
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.29 E-value=0.015 Score=47.20 Aligned_cols=24 Identities=42% Similarity=0.558 Sum_probs=21.3
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||.+.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999764
No 459
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.29 E-value=0.012 Score=48.21 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=20.7
Q ss_pred ceEEeEeecCCCChHHHHHHHhh
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
.+++.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47889999999999999999874
No 460
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.29 E-value=0.015 Score=47.46 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=20.7
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|+.|+|||||++.+..-
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999654
No 461
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.28 E-value=0.014 Score=47.57 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.3
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||++.+..-
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 358999999999999999999764
No 462
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.28 E-value=0.019 Score=51.49 Aligned_cols=26 Identities=31% Similarity=0.097 Sum_probs=22.5
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+-+|+|.|..|+|||||++.+..-
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~l 235 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYL 235 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999643
No 463
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.26 E-value=0.015 Score=47.88 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.1
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999999754
No 464
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.26 E-value=0.015 Score=47.34 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=21.2
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||++.+..-
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999764
No 465
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.26 E-value=0.014 Score=47.58 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=20.3
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+++|+|+.|+|||||++.++.-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999853
No 466
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.25 E-value=0.015 Score=44.40 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=21.1
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+-|-|.|.+|+|||||+..+...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH
Confidence 456889999999999999999865
No 467
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.24 E-value=0.015 Score=47.87 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.4
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||++.++.-
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999999754
No 468
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.24 E-value=0.015 Score=47.31 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.1
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999753
No 469
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.24 E-value=0.014 Score=44.86 Aligned_cols=19 Identities=37% Similarity=0.371 Sum_probs=17.8
Q ss_pred EeecCCCChHHHHHHHhhc
Q 041190 162 ITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 162 I~G~~GiGKTtLa~~v~~~ 180 (261)
|.|++|+||||+|+.+...
T Consensus 1 i~G~PgsGK~t~~~~la~~ 19 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKR 19 (151)
T ss_dssp EEESTTSSHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHh
Confidence 6899999999999999886
No 470
>PRK14528 adenylate kinase; Provisional
Probab=95.23 E-value=0.016 Score=46.33 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.3
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+.|.|.|++|+||||+++.+...
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~ 24 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCER 24 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999999765
No 471
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.017 Score=55.45 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=33.0
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhh
Q 041190 131 EVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
-++||+++++.++..|.+... +.+ -.+|.+|+|||+++.-+..
T Consensus 171 PvIGRd~EI~r~iqIL~RR~K----NNP--vLiGEpGVGKTAIvEGLA~ 213 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTK----NNP--VLVGEPGVGKTAIVEGLAQ 213 (786)
T ss_pred CCcChHHHHHHHHHHHhccCC----CCC--eEecCCCCCHHHHHHHHHH
Confidence 389999999999999988642 222 3579999999997655544
No 472
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.23 E-value=0.022 Score=45.42 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=21.3
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+++.++|++|+||+||++.+...
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhc
Confidence 67899999999999999999876
No 473
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=95.22 E-value=0.072 Score=48.79 Aligned_cols=89 Identities=20% Similarity=0.244 Sum_probs=53.8
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCC-HHHHHHHHHHHhc---------------CCCCCCCH
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFD-AVGVTKVILQAAA---------------GSADVNDL 221 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~i~~~i~~~l~---------------~~~~~~~~ 221 (261)
.-++|.|-+|+|||+|+..+....... +=+..+++-+++... ..+++.+++..-. ...+....
T Consensus 162 QR~gIfgg~GvGKs~L~~~~~~~~~~~-~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~~ 240 (494)
T CHL00060 162 GKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPG 240 (494)
T ss_pred CEEeeecCCCCChhHHHHHHHHHHHHh-cCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCHH
Confidence 458999999999999999887662111 115677888877543 4566666555110 01111111
Q ss_pred H-----HHHHHHHHHhC--CC-eEEEEEeCCCCC
Q 041190 222 N-----LLQLQLENQLK--NK-KFLLVLDDMWSE 247 (261)
Q Consensus 222 ~-----~~~~~l~~~l~--~k-r~LiVlDdvw~~ 247 (261)
. ...-.+-++++ ++ ++||++||+-.-
T Consensus 241 ~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 241 ARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 1 22333666663 44 999999999654
No 474
>PRK00698 tmk thymidylate kinase; Validated
Probab=95.22 E-value=0.017 Score=46.55 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=21.3
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+|.|.|+.|+||||+++.+.+.
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~ 26 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKEL 26 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999875
No 475
>PLN02674 adenylate kinase
Probab=95.22 E-value=0.07 Score=44.58 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.4
Q ss_pred ceEEeEeecCCCChHHHHHHHhhcc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
...|.|.|++|+||||+++.+..+.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 3557899999999999999998763
No 476
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.21 E-value=0.016 Score=48.24 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.3
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999764
No 477
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.20 E-value=0.016 Score=47.48 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.3
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||.+.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999764
No 478
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.20 E-value=0.016 Score=47.45 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.2
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|.|+.|+|||||.+.+..-
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999754
No 479
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.20 E-value=0.017 Score=46.53 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=21.0
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|..|+|||||++.+..-
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999765
No 480
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.18 E-value=0.19 Score=42.66 Aligned_cols=94 Identities=16% Similarity=0.189 Sum_probs=51.8
Q ss_pred hHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCCCC
Q 041190 138 DKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGSAD 217 (261)
Q Consensus 138 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~~~ 217 (261)
++..|...|... -+-.-++|.+|+||+|+++.+..=.. ++ ..-+.+++.++..+...++-.-
T Consensus 19 hi~ri~RvL~~~-------~Gh~LLvG~~GsGr~sl~rLaa~i~~----~~-~~~i~~~~~y~~~~f~~dLk~~------ 80 (268)
T PF12780_consen 19 HIARISRVLSQP-------RGHALLVGVGGSGRQSLARLAAFICG----YE-VFQIEITKGYSIKDFKEDLKKA------ 80 (268)
T ss_dssp HHHHHHHHHCST-------TEEEEEECTTTSCHHHHHHHHHHHTT----EE-EE-TTTSTTTHHHHHHHHHHHH------
T ss_pred HHHHHHHHHcCC-------CCCeEEecCCCccHHHHHHHHHHHhc----cc-eEEEEeeCCcCHHHHHHHHHHH------
Confidence 344555556432 24456999999999999998765311 10 1123455656655543322211
Q ss_pred CCCHHHHHHHHHHHhCCCeEEEEEeCCCCCChhhHHHhhcc
Q 041190 218 VNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVWTNLCKP 258 (261)
Q Consensus 218 ~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~~~~~w~~l~~~ 258 (261)
..+..+++++..+++.|-+-.++...+.|...
T Consensus 81 ---------~~~ag~~~~~~vfll~d~qi~~~~fLe~in~L 112 (268)
T PF12780_consen 81 ---------LQKAGIKGKPTVFLLTDSQIVDESFLEDINSL 112 (268)
T ss_dssp ---------HHHHHCS-S-EEEEEECCCSSSCHHHHHHHHH
T ss_pred ---------HHHHhccCCCeEEEecCcccchHhHHHHHHHH
Confidence 12334568888888888776654455655443
No 481
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.18 E-value=0.017 Score=47.17 Aligned_cols=24 Identities=38% Similarity=0.393 Sum_probs=21.6
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||.+.+..-
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999864
No 482
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.18 E-value=0.49 Score=36.31 Aligned_cols=84 Identities=13% Similarity=0.181 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcc-ccChhHHHHHHHHHHHHhhhHhHHH
Q 041190 6 EAILTVTVEMLVEKLALEVIQLFARQEQIEADLKKWEELLVIIKVVLDDAEEKQ-ITKPLTKKWLGKLQNLAYDAEDMLD 84 (261)
Q Consensus 6 ~~~~~~~v~~l~~~l~~~~~~~~~~~~~v~~~i~~L~~~l~~i~~~l~~a~~~~-~~~~~~~~wl~~lr~~ayd~ed~ld 84 (261)
+-+.+++++.+++.+...+....+.....+.-+++|...++.|..++.+-+... .-+..-+.=+.++.+...++++++.
T Consensus 4 eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~ 83 (147)
T PF05659_consen 4 ELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVE 83 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555556666677789999999999999999877754 1222225667888888889999998
Q ss_pred HHHHH
Q 041190 85 EFATE 89 (261)
Q Consensus 85 ~~~~~ 89 (261)
.|..-
T Consensus 84 k~sk~ 88 (147)
T PF05659_consen 84 KCSKV 88 (147)
T ss_pred Hhccc
Confidence 88543
No 483
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=95.18 E-value=0.016 Score=45.02 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=18.9
Q ss_pred EeEeecCCCChHHHHHHHhhc
Q 041190 160 IPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 160 i~I~G~~GiGKTtLa~~v~~~ 180 (261)
|.|+|.+|+|||||++.+.+.
T Consensus 3 i~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999988765
No 484
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.17 E-value=0.016 Score=48.00 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.2
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 27 GEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999754
No 485
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.17 E-value=0.017 Score=46.77 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.8
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|+.|+|||||.+.+..-
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999754
No 486
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.17 E-value=0.017 Score=47.30 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.1
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998653
No 487
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.17 E-value=0.017 Score=47.53 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.5
Q ss_pred ceEEeEeecCCCChHHHHHHHh
Q 041190 157 FSVIPITGMGGLGKTTLAQLVF 178 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~ 178 (261)
...+.|||.+|+||||+|+.+-
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 4569999999999999999874
No 488
>PRK02496 adk adenylate kinase; Provisional
Probab=95.16 E-value=0.019 Score=45.68 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=19.6
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-+.|.|++|+||||+++.+...
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~ 24 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEH 24 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999765
No 489
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.16 E-value=0.017 Score=47.86 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.8
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|+.|+|||||++.+..-
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999754
No 490
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.16 E-value=0.017 Score=47.81 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.1
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||++.+..-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999654
No 491
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=95.16 E-value=0.017 Score=44.60 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=19.0
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-|.|+|.+|+|||||++.+.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3688999999999999988754
No 492
>PRK00023 cmk cytidylate kinase; Provisional
Probab=95.15 E-value=0.069 Score=44.11 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=22.0
Q ss_pred eEEeEeecCCCChHHHHHHHhhcc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.+|+|.|++|+||||+++.+.+..
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~ 28 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKL 28 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998764
No 493
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.15 E-value=0.17 Score=44.24 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=32.3
Q ss_pred cccc-ccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 131 EVYG-REKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 131 ~~~g-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++| .+.-++.|...+..+ .-.+..-++|+.|+||||+|+.+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~ 51 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKS 51 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3556 555667777777543 23567789999999999999887544
No 494
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.14 E-value=0.017 Score=46.75 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.3
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||.+.+..-
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999764
No 495
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.12 E-value=0.076 Score=45.00 Aligned_cols=79 Identities=15% Similarity=0.227 Sum_probs=42.8
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCC--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhCCC
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSED--FDAVGVTKVILQAAAGSADVNDLNLLQLQLENQLKNK 235 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~--~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k 235 (261)
.++.|.|+.|+||||+++.+.+. +.. ...++ +.+.++ +....+ .++. ...........-++..|+..
T Consensus 81 GlilisG~tGSGKTT~l~all~~--i~~-~~~~i-itiEdp~E~~~~~~-----~q~~--v~~~~~~~~~~~l~~~lR~~ 149 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSE--LNT-PEKNI-ITVEDPVEYQIPGI-----NQVQ--VNEKAGLTFARGLRAILRQD 149 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhh--hCC-CCCeE-EEECCCceecCCCc-----eEEE--eCCcCCcCHHHHHHHHhccC
Confidence 58999999999999999988654 211 11111 222221 111100 0111 00110112344566777777
Q ss_pred eEEEEEeCCCCC
Q 041190 236 KFLLVLDDMWSE 247 (261)
Q Consensus 236 r~LiVlDdvw~~ 247 (261)
.=.|+++++.+.
T Consensus 150 PD~i~vgEiR~~ 161 (264)
T cd01129 150 PDIIMVGEIRDA 161 (264)
T ss_pred CCEEEeccCCCH
Confidence 778888888886
No 496
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.12 E-value=0.034 Score=45.08 Aligned_cols=42 Identities=26% Similarity=0.320 Sum_probs=28.6
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhh
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
.+++|.+..+..|.-.... ..-+.++|++|+|||++|+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 4577777666665544432 24789999999999999998853
No 497
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.12 E-value=0.14 Score=47.54 Aligned_cols=100 Identities=16% Similarity=0.063 Sum_probs=58.2
Q ss_pred hHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcC---
Q 041190 138 DKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAG--- 214 (261)
Q Consensus 138 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~--- 214 (261)
....|-++|.. +-+.-.++.|.|.+|+|||+|+.++.... ...-...+|++...+ ...+...+ ..++.
T Consensus 258 Gi~~lD~~l~G----G~~~g~~~li~G~~G~GKT~l~~~~~~~~--~~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~ 328 (509)
T PRK09302 258 GVPDLDEMLGG----GFFRGSIILVSGATGTGKTLLASKFAEAA--CRRGERCLLFAFEES--RAQLIRNA-RSWGIDLE 328 (509)
T ss_pred CcHHHHHhhcC----CCCCCcEEEEEcCCCCCHHHHHHHHHHHH--HhCCCcEEEEEecCC--HHHHHHHH-HHcCCChH
Confidence 34555555532 23456788999999999999998887652 122345777776653 44444332 23331
Q ss_pred -------------CCCCCCHHHHHHHHHHHhC-CCeEEEEEeCCCC
Q 041190 215 -------------SADVNDLNLLQLQLENQLK-NKKFLLVLDDMWS 246 (261)
Q Consensus 215 -------------~~~~~~~~~~~~~l~~~l~-~kr~LiVlDdvw~ 246 (261)
.+.....+.....+.+.+. .+.-++|+|.+-.
T Consensus 329 ~~~~~g~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~ 374 (509)
T PRK09302 329 KMEEKGLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSA 374 (509)
T ss_pred HHhhcCCceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 0112233455555655553 3445899999843
No 498
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.12 E-value=0.017 Score=47.48 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.2
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||.+.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 31 GETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999754
No 499
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.12 E-value=0.017 Score=48.58 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.3
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999754
No 500
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.11 E-value=0.018 Score=39.96 Aligned_cols=23 Identities=52% Similarity=0.683 Sum_probs=19.6
Q ss_pred EEeEeecCCCChHHHHHHHhhcc
Q 041190 159 VIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
++.+.|.+|+||||++..+....
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l 23 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAAL 23 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999887763
Done!