Query 041190
Match_columns 261
No_of_seqs 140 out of 1890
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 07:24:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041190.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041190hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.8 4.9E-21 1.7E-25 176.8 12.6 119 133-254 131-262 (549)
2 3qfl_A MLA10; coiled-coil, (CC 99.7 9.5E-18 3.2E-22 122.8 8.7 81 12-92 2-84 (115)
3 1vt4_I APAF-1 related killer D 99.7 3.4E-17 1.1E-21 157.3 11.1 118 131-255 129-262 (1221)
4 3sfz_A APAF-1, apoptotic pepti 99.6 3.6E-16 1.2E-20 155.8 11.4 123 127-255 121-254 (1249)
5 1z6t_A APAF-1, apoptotic prote 99.6 2.3E-15 7.8E-20 139.8 10.0 115 128-247 122-248 (591)
6 1w5s_A Origin recognition comp 99.2 3.7E-11 1.3E-15 106.2 10.3 119 128-247 20-150 (412)
7 2v1u_A Cell division control p 99.1 5.7E-10 2E-14 97.5 12.5 119 128-248 17-143 (387)
8 1fnn_A CDC6P, cell division co 99.1 6E-10 2E-14 97.6 12.0 129 128-257 15-147 (389)
9 2qby_B CDC6 homolog 3, cell di 99.1 3.6E-10 1.2E-14 99.0 8.8 118 129-248 19-146 (384)
10 2qby_A CDC6 homolog 1, cell di 99.0 4.3E-10 1.5E-14 98.2 6.6 117 127-247 17-140 (386)
11 2qen_A Walker-type ATPase; unk 98.9 1.9E-09 6.6E-14 92.8 8.1 106 128-248 10-141 (350)
12 3te6_A Regulatory protein SIR3 98.8 7.3E-09 2.5E-13 88.6 8.3 116 131-248 21-145 (318)
13 2fna_A Conserved hypothetical 98.7 3.1E-08 1E-12 85.4 9.5 104 128-247 11-149 (357)
14 2chg_A Replication factor C sm 98.7 1.4E-07 4.9E-12 75.4 10.7 107 130-257 17-124 (226)
15 1njg_A DNA polymerase III subu 98.6 1.6E-07 5.6E-12 75.9 9.1 47 130-181 23-69 (250)
16 1jbk_A CLPB protein; beta barr 98.5 1.9E-07 6.5E-12 72.9 6.4 45 130-180 22-66 (195)
17 1sxj_B Activator 1 37 kDa subu 98.4 3.9E-07 1.3E-11 77.5 7.7 107 130-257 21-129 (323)
18 1iqp_A RFCS; clamp loader, ext 98.3 1.5E-06 5.2E-11 73.9 7.5 107 130-257 25-132 (327)
19 2w58_A DNAI, primosome compone 98.2 1.6E-06 5.6E-11 68.8 6.4 96 138-252 37-132 (202)
20 2p65_A Hypothetical protein PF 98.2 1E-06 3.5E-11 68.4 5.1 45 130-180 22-66 (187)
21 3ec2_A DNA replication protein 98.1 1E-05 3.6E-10 63.0 8.4 93 135-246 19-111 (180)
22 1hqc_A RUVB; extended AAA-ATPa 98.1 2.6E-06 8.8E-11 72.6 5.2 50 130-180 12-61 (324)
23 3n70_A Transport activator; si 98.1 6.5E-06 2.2E-10 62.0 6.4 46 131-180 2-47 (145)
24 3h4m_A Proteasome-activating n 98.1 9.8E-06 3.4E-10 67.8 7.9 54 127-180 14-74 (285)
25 2qz4_A Paraplegin; AAA+, SPG7, 98.0 1.5E-05 5E-10 65.7 8.4 51 130-180 6-62 (262)
26 2chq_A Replication factor C sm 98.0 1.3E-05 4.5E-10 67.8 8.3 105 130-258 17-125 (319)
27 1jr3_A DNA polymerase III subu 98.0 2E-05 6.9E-10 68.3 8.7 47 130-181 16-62 (373)
28 3uk6_A RUVB-like 2; hexameric 98.0 2.6E-05 8.8E-10 67.6 9.3 49 130-182 44-95 (368)
29 3pvs_A Replication-associated 98.0 1.8E-05 6.2E-10 70.8 8.5 97 130-255 26-126 (447)
30 3u61_B DNA polymerase accessor 98.0 3.3E-05 1.1E-09 65.8 9.6 101 130-256 26-127 (324)
31 3pfi_A Holliday junction ATP-d 98.0 1.3E-05 4.3E-10 68.9 6.8 51 129-180 28-78 (338)
32 3co5_A Putative two-component 97.9 8.1E-06 2.8E-10 61.3 4.7 47 130-180 4-50 (143)
33 3syl_A Protein CBBX; photosynt 97.9 1.8E-05 6.2E-10 66.9 7.0 51 131-181 32-91 (309)
34 1sxj_D Activator 1 41 kDa subu 97.9 4.6E-05 1.6E-09 65.4 9.7 115 130-256 37-154 (353)
35 1xwi_A SKD1 protein; VPS4B, AA 97.9 8.2E-05 2.8E-09 63.6 10.1 52 129-180 11-68 (322)
36 2cvh_A DNA repair and recombin 97.8 0.00013 4.3E-09 58.3 10.5 87 156-247 19-117 (220)
37 3eie_A Vacuolar protein sortin 97.8 5.8E-05 2E-09 64.5 8.8 51 129-180 17-74 (322)
38 3b9p_A CG5977-PA, isoform A; A 97.8 6.2E-05 2.1E-09 63.3 8.7 52 129-180 20-77 (297)
39 4fcw_A Chaperone protein CLPB; 97.8 7E-05 2.4E-09 63.2 8.7 119 131-258 18-142 (311)
40 1sxj_A Activator 1 95 kDa subu 97.8 3.1E-05 1.1E-09 70.6 6.6 110 130-248 39-161 (516)
41 3bos_A Putative DNA replicatio 97.7 2.1E-05 7.3E-10 63.5 4.3 60 130-197 28-90 (242)
42 1lv7_A FTSH; alpha/beta domain 97.7 0.00013 4.3E-09 60.1 9.0 53 128-180 10-68 (257)
43 3cf0_A Transitional endoplasmi 97.7 0.00014 4.6E-09 61.6 8.9 52 129-180 14-72 (301)
44 2vhj_A Ntpase P4, P4; non- hyd 97.7 3.7E-05 1.2E-09 65.5 5.1 71 157-248 123-195 (331)
45 2qp9_X Vacuolar protein sortin 97.7 0.00018 6.2E-09 62.3 9.4 53 129-181 50-108 (355)
46 1d2n_A N-ethylmaleimide-sensit 97.7 0.00013 4.3E-09 60.6 8.0 48 130-180 33-87 (272)
47 3d8b_A Fidgetin-like protein 1 97.6 9.1E-05 3.1E-09 64.2 7.0 51 130-180 84-140 (357)
48 3vfd_A Spastin; ATPase, microt 97.6 0.00018 6.1E-09 63.1 8.4 52 129-180 114-171 (389)
49 2bjv_A PSP operon transcriptio 97.6 6.5E-05 2.2E-09 62.1 5.3 47 130-180 6-52 (265)
50 1sxj_C Activator 1 40 kDa subu 97.6 0.00015 5.2E-09 62.3 7.7 45 130-180 25-69 (340)
51 1sxj_E Activator 1 40 kDa subu 97.6 0.00025 8.6E-09 60.9 8.8 45 130-180 14-59 (354)
52 2zan_A Vacuolar protein sortin 97.6 0.00021 7.1E-09 63.9 8.3 52 129-180 133-190 (444)
53 2z4s_A Chromosomal replication 97.5 9.7E-05 3.3E-09 66.0 6.0 76 157-248 130-207 (440)
54 1l8q_A Chromosomal replication 97.5 0.00038 1.3E-08 59.3 9.3 26 156-181 36-61 (324)
55 3t15_A Ribulose bisphosphate c 97.5 0.00016 5.4E-09 60.9 6.9 27 155-181 34-60 (293)
56 4b4t_L 26S protease subunit RP 97.5 0.00021 7E-09 63.6 7.6 53 129-181 180-239 (437)
57 1ojl_A Transcriptional regulat 97.5 6.8E-05 2.3E-09 63.6 4.4 47 130-180 2-48 (304)
58 2qgz_A Helicase loader, putati 97.5 0.00011 3.9E-09 62.3 5.7 42 137-181 135-176 (308)
59 3hu3_A Transitional endoplasmi 97.5 0.00017 5.8E-09 65.2 6.7 51 130-180 204-261 (489)
60 1qvr_A CLPB protein; coiled co 97.5 0.00026 8.9E-09 68.4 8.1 45 130-180 170-214 (854)
61 3cf2_A TER ATPase, transitiona 97.4 0.00073 2.5E-08 64.4 10.9 99 130-247 204-309 (806)
62 3lw7_A Adenylate kinase relate 97.4 0.00057 1.9E-08 52.1 8.4 22 158-180 2-23 (179)
63 4b4t_J 26S protease regulatory 97.4 0.00022 7.7E-09 62.5 6.6 51 130-180 148-205 (405)
64 4b4t_K 26S protease regulatory 97.4 0.0003 1E-08 62.3 7.0 52 129-180 171-229 (428)
65 2kjq_A DNAA-related protein; s 97.4 0.00022 7.4E-09 53.9 5.1 25 157-181 36-60 (149)
66 2c9o_A RUVB-like 1; hexameric 97.3 0.00017 5.9E-09 64.6 5.1 51 130-181 37-87 (456)
67 1r6b_X CLPA protein; AAA+, N-t 97.3 0.001 3.5E-08 63.3 10.8 45 130-180 186-230 (758)
68 1v5w_A DMC1, meiotic recombina 97.3 0.0016 5.6E-08 56.0 10.9 92 155-247 120-231 (343)
69 4b4t_M 26S protease regulatory 97.3 0.00032 1.1E-08 62.3 6.1 51 130-180 181-238 (434)
70 3pxi_A Negative regulator of g 97.3 0.0004 1.4E-08 66.2 7.1 45 130-180 180-224 (758)
71 2ce7_A Cell division protein F 97.3 0.00065 2.2E-08 61.1 7.8 53 129-181 15-73 (476)
72 4b4t_H 26S protease regulatory 97.3 0.00035 1.2E-08 62.3 5.8 51 130-180 209-266 (467)
73 3hr8_A Protein RECA; alpha and 97.2 0.0012 4.2E-08 57.1 8.8 100 139-248 46-152 (356)
74 2gno_A DNA polymerase III, gam 97.2 0.0018 6.1E-08 54.9 9.2 100 134-256 1-103 (305)
75 3pxi_A Negative regulator of g 97.2 0.00027 9.1E-09 67.4 4.4 109 130-258 491-602 (758)
76 3pxg_A Negative regulator of g 97.1 0.00027 9.3E-09 63.5 4.2 45 130-180 180-224 (468)
77 2z43_A DNA repair and recombin 97.1 0.0019 6.7E-08 55.0 9.1 91 156-247 106-215 (324)
78 1ypw_A Transitional endoplasmi 97.1 0.0011 3.7E-08 63.7 8.2 53 128-180 202-261 (806)
79 1n0w_A DNA repair protein RAD5 97.1 0.0012 4.1E-08 53.3 7.4 91 156-247 23-131 (243)
80 4b4t_I 26S protease regulatory 97.1 0.0007 2.4E-08 59.8 6.2 51 130-180 182-239 (437)
81 1xp8_A RECA protein, recombina 97.1 0.0023 7.7E-08 55.6 8.9 99 139-247 59-164 (366)
82 1rz3_A Hypothetical protein rb 97.0 0.0007 2.4E-08 53.6 5.2 43 135-180 3-45 (201)
83 2i1q_A DNA repair and recombin 97.0 0.002 6.8E-08 54.8 7.9 91 155-246 96-215 (322)
84 1qvr_A CLPB protein; coiled co 96.9 0.0008 2.7E-08 65.0 5.5 120 131-259 559-684 (854)
85 1um8_A ATP-dependent CLP prote 96.9 0.0016 5.5E-08 56.6 7.0 50 131-180 22-95 (376)
86 2r62_A Cell division protease 96.9 0.00083 2.8E-08 55.4 4.8 53 129-181 10-68 (268)
87 1in4_A RUVB, holliday junction 96.9 0.00027 9.2E-09 60.7 1.8 51 130-181 25-75 (334)
88 1a5t_A Delta prime, HOLB; zinc 96.9 0.0049 1.7E-07 52.7 9.8 40 136-180 8-47 (334)
89 2zr9_A Protein RECA, recombina 96.9 0.0035 1.2E-07 54.1 8.8 100 139-248 46-152 (349)
90 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.0047 1.6E-07 49.3 9.1 24 157-180 23-46 (235)
91 1ixz_A ATP-dependent metallopr 96.9 0.0014 4.7E-08 53.7 6.0 52 129-181 15-73 (254)
92 2x8a_A Nuclear valosin-contain 96.9 0.0017 5.7E-08 54.1 6.5 50 130-180 10-67 (274)
93 3c8u_A Fructokinase; YP_612366 96.9 0.001 3.5E-08 52.8 4.8 38 139-180 8-45 (208)
94 2dhr_A FTSH; AAA+ protein, hex 96.9 0.0051 1.7E-07 55.6 9.8 54 128-181 29-88 (499)
95 1pzn_A RAD51, DNA repair and r 96.8 0.0029 9.8E-08 54.6 7.7 92 155-247 129-243 (349)
96 3m6a_A ATP-dependent protease 96.8 0.0016 5.4E-08 59.7 6.2 50 131-180 82-131 (543)
97 2px0_A Flagellar biosynthesis 96.8 0.0046 1.6E-07 52.0 8.6 25 156-180 104-128 (296)
98 3io5_A Recombination and repai 96.8 0.0064 2.2E-07 51.6 9.3 84 159-247 30-123 (333)
99 1zp6_A Hypothetical protein AT 96.8 0.00088 3E-08 52.2 3.7 25 156-180 8-32 (191)
100 3kb2_A SPBC2 prophage-derived 96.8 0.00071 2.4E-08 51.6 3.1 23 158-180 2-24 (173)
101 1ofh_A ATP-dependent HSL prote 96.8 0.00079 2.7E-08 56.5 3.7 52 130-181 15-74 (310)
102 1iy2_A ATP-dependent metallopr 96.8 0.002 6.8E-08 53.5 5.9 53 128-181 38-97 (278)
103 2xxa_A Signal recognition part 96.7 0.019 6.4E-07 51.0 12.3 42 139-180 79-123 (433)
104 1qhx_A CPT, protein (chloramph 96.7 0.00082 2.8E-08 51.7 3.1 23 158-180 4-26 (178)
105 2b8t_A Thymidine kinase; deoxy 96.7 0.00051 1.8E-08 55.5 1.9 93 157-254 12-108 (223)
106 1gvn_B Zeta; postsegregational 96.7 0.0018 6.1E-08 54.3 5.3 41 139-180 16-56 (287)
107 1kgd_A CASK, peripheral plasma 96.7 0.00086 2.9E-08 52.0 3.1 23 158-180 6-28 (180)
108 1ly1_A Polynucleotide kinase; 96.7 0.00097 3.3E-08 51.2 3.3 22 158-179 3-24 (181)
109 3vaa_A Shikimate kinase, SK; s 96.7 0.00091 3.1E-08 52.7 3.2 24 157-180 25-48 (199)
110 3uie_A Adenylyl-sulfate kinase 96.7 0.0012 4.2E-08 52.0 3.7 26 156-181 24-49 (200)
111 1kag_A SKI, shikimate kinase I 96.6 0.00087 3E-08 51.3 2.6 23 158-180 5-27 (173)
112 3asz_A Uridine kinase; cytidin 96.6 0.0012 4.2E-08 52.2 3.6 25 156-180 5-29 (211)
113 3sr0_A Adenylate kinase; phosp 96.6 0.0058 2E-07 48.6 7.5 75 159-247 2-86 (206)
114 1u94_A RECA protein, recombina 96.6 0.0057 2E-07 52.9 8.0 100 139-248 48-154 (356)
115 1odf_A YGR205W, hypothetical 3 96.6 0.0014 4.9E-08 55.0 4.1 27 154-180 28-54 (290)
116 3hws_A ATP-dependent CLP prote 96.6 0.0019 6.5E-08 55.9 4.7 50 131-180 16-74 (363)
117 3tr0_A Guanylate kinase, GMP k 96.6 0.0013 4.4E-08 51.7 3.4 23 158-180 8-30 (205)
118 2rhm_A Putative kinase; P-loop 96.6 0.0015 5.1E-08 50.8 3.7 25 156-180 4-28 (193)
119 3t61_A Gluconokinase; PSI-biol 96.6 0.0012 4.1E-08 52.0 3.0 24 157-180 18-41 (202)
120 1r6b_X CLPA protein; AAA+, N-t 96.6 0.0064 2.2E-07 57.8 8.6 118 130-258 458-580 (758)
121 2p5t_B PEZT; postsegregational 96.6 0.0022 7.6E-08 52.6 4.7 42 138-180 14-55 (253)
122 1nks_A Adenylate kinase; therm 96.5 0.0014 4.9E-08 50.8 3.4 23 158-180 2-24 (194)
123 1knq_A Gluconate kinase; ALFA/ 96.5 0.0018 6.1E-08 49.7 3.9 25 156-180 7-31 (175)
124 4gp7_A Metallophosphoesterase; 96.5 0.0013 4.5E-08 50.6 3.0 24 157-180 9-32 (171)
125 4eun_A Thermoresistant glucoki 96.5 0.0014 4.7E-08 51.7 3.2 25 156-180 28-52 (200)
126 3ice_A Transcription terminati 96.5 0.0034 1.2E-07 54.7 5.8 96 141-247 163-273 (422)
127 3nbx_X ATPase RAVA; AAA+ ATPas 96.5 0.0024 8.3E-08 57.8 5.1 44 130-181 22-65 (500)
128 1ye8_A Protein THEP1, hypothet 96.5 0.0014 4.7E-08 51.0 3.1 23 159-181 2-24 (178)
129 3lda_A DNA repair protein RAD5 96.5 0.0068 2.3E-07 53.3 7.8 104 139-247 164-285 (400)
130 3tau_A Guanylate kinase, GMP k 96.5 0.0015 5.2E-08 51.9 3.4 24 157-180 8-31 (208)
131 1uf9_A TT1252 protein; P-loop, 96.5 0.0018 6.3E-08 50.7 3.7 26 155-180 6-31 (203)
132 3trf_A Shikimate kinase, SK; a 96.5 0.0015 5E-08 50.6 3.1 24 157-180 5-28 (185)
133 3tqc_A Pantothenate kinase; bi 96.5 0.0027 9.2E-08 54.1 4.9 27 154-180 89-115 (321)
134 2r44_A Uncharacterized protein 96.5 0.0015 5.1E-08 55.6 3.4 42 131-180 28-69 (331)
135 2j41_A Guanylate kinase; GMP, 96.5 0.0017 5.7E-08 51.1 3.4 24 157-180 6-29 (207)
136 2bdt_A BH3686; alpha-beta prot 96.5 0.0017 5.8E-08 50.5 3.3 22 158-179 3-24 (189)
137 3cf2_A TER ATPase, transitiona 96.5 0.0098 3.3E-07 56.7 9.1 101 128-247 475-582 (806)
138 3a00_A Guanylate kinase, GMP k 96.5 0.0013 4.5E-08 51.2 2.7 23 158-180 2-24 (186)
139 1ukz_A Uridylate kinase; trans 96.4 0.0022 7.4E-08 50.5 3.9 26 155-180 13-38 (203)
140 1kht_A Adenylate kinase; phosp 96.4 0.0016 5.5E-08 50.5 3.1 23 158-180 4-26 (192)
141 1vma_A Cell division protein F 96.4 0.017 6E-07 48.7 9.7 25 156-180 103-127 (306)
142 2qt1_A Nicotinamide riboside k 96.4 0.0021 7.2E-08 50.8 3.8 25 156-180 20-44 (207)
143 1zuh_A Shikimate kinase; alpha 96.4 0.0017 5.8E-08 49.5 3.0 26 155-180 5-30 (168)
144 3iij_A Coilin-interacting nucl 96.4 0.0016 5.3E-08 50.3 2.8 24 157-180 11-34 (180)
145 1sky_E F1-ATPase, F1-ATP synth 96.4 0.011 3.7E-07 52.9 8.4 88 158-246 152-256 (473)
146 1lvg_A Guanylate kinase, GMP k 96.4 0.0015 5.2E-08 51.5 2.7 23 158-180 5-27 (198)
147 2c95_A Adenylate kinase 1; tra 96.4 0.0021 7.1E-08 50.1 3.4 24 157-180 9-32 (196)
148 1tev_A UMP-CMP kinase; ploop, 96.4 0.002 6.9E-08 50.0 3.4 24 157-180 3-26 (196)
149 2jaq_A Deoxyguanosine kinase; 96.4 0.0018 6.2E-08 50.7 3.1 22 159-180 2-23 (205)
150 2if2_A Dephospho-COA kinase; a 96.4 0.002 6.7E-08 50.8 3.2 22 158-179 2-23 (204)
151 1cke_A CK, MSSA, protein (cyti 96.4 0.0019 6.5E-08 51.7 3.1 23 158-180 6-28 (227)
152 1y63_A LMAJ004144AAA protein; 96.3 0.0025 8.4E-08 49.5 3.6 25 156-180 9-33 (184)
153 1ex7_A Guanylate kinase; subst 96.3 0.0019 6.5E-08 50.6 3.0 23 158-180 2-24 (186)
154 2qor_A Guanylate kinase; phosp 96.3 0.0018 6E-08 51.2 2.8 24 157-180 12-35 (204)
155 2ze6_A Isopentenyl transferase 96.3 0.0021 7E-08 52.9 3.3 23 158-180 2-24 (253)
156 3umf_A Adenylate kinase; rossm 96.3 0.0024 8.3E-08 51.3 3.5 27 154-180 26-52 (217)
157 1qf9_A UMP/CMP kinase, protein 96.3 0.0031 1.1E-07 48.9 4.1 24 157-180 6-29 (194)
158 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.0024 8.1E-08 52.7 3.5 24 157-180 4-27 (260)
159 3dm5_A SRP54, signal recogniti 96.3 0.029 1E-06 49.8 10.6 25 156-180 99-123 (443)
160 2yvu_A Probable adenylyl-sulfa 96.3 0.003 1E-07 49.0 3.9 26 155-180 11-36 (186)
161 1jjv_A Dephospho-COA kinase; P 96.3 0.0024 8.3E-08 50.4 3.3 22 158-179 3-24 (206)
162 1via_A Shikimate kinase; struc 96.3 0.0019 6.6E-08 49.6 2.6 23 158-180 5-27 (175)
163 1g8p_A Magnesium-chelatase 38 96.3 0.0024 8.2E-08 54.5 3.5 46 130-181 24-69 (350)
164 1uj2_A Uridine-cytidine kinase 96.3 0.0026 8.7E-08 52.1 3.5 26 155-180 20-45 (252)
165 2bbw_A Adenylate kinase 4, AK4 96.3 0.0023 8E-08 52.1 3.2 24 157-180 27-50 (246)
166 3cm0_A Adenylate kinase; ATP-b 96.3 0.0026 8.9E-08 49.2 3.3 24 157-180 4-27 (186)
167 2yhs_A FTSY, cell division pro 96.3 0.031 1.1E-06 50.3 10.7 25 156-180 292-316 (503)
168 1znw_A Guanylate kinase, GMP k 96.3 0.0024 8.1E-08 50.6 3.1 24 157-180 20-43 (207)
169 2iyv_A Shikimate kinase, SK; t 96.3 0.0019 6.6E-08 49.9 2.5 23 158-180 3-25 (184)
170 2ffh_A Protein (FFH); SRP54, s 96.2 0.012 4E-07 52.1 7.8 25 156-180 97-121 (425)
171 3aez_A Pantothenate kinase; tr 96.2 0.0027 9.4E-08 53.9 3.6 26 155-180 88-113 (312)
172 2cdn_A Adenylate kinase; phosp 96.2 0.003 1E-07 49.6 3.6 25 156-180 19-43 (201)
173 1xjc_A MOBB protein homolog; s 96.2 0.0026 8.9E-08 49.0 3.1 25 156-180 3-27 (169)
174 3bh0_A DNAB-like replicative h 96.2 0.045 1.5E-06 46.3 11.1 39 156-196 67-105 (315)
175 2bwj_A Adenylate kinase 5; pho 96.2 0.0026 9E-08 49.6 3.2 23 158-180 13-35 (199)
176 2jeo_A Uridine-cytidine kinase 96.2 0.003 1E-07 51.4 3.7 25 156-180 24-48 (245)
177 2plr_A DTMP kinase, probable t 96.2 0.003 1E-07 49.8 3.5 24 158-181 5-28 (213)
178 3kl4_A SRP54, signal recogniti 96.2 0.044 1.5E-06 48.6 11.2 25 156-180 96-120 (433)
179 2vli_A Antibiotic resistance p 96.2 0.0018 6.1E-08 49.9 2.0 24 157-180 5-28 (183)
180 2pez_A Bifunctional 3'-phospho 96.2 0.0033 1.1E-07 48.4 3.5 25 156-180 4-28 (179)
181 1e6c_A Shikimate kinase; phosp 96.2 0.0024 8.1E-08 48.8 2.6 23 158-180 3-25 (173)
182 2pbr_A DTMP kinase, thymidylat 96.2 0.0029 9.8E-08 49.1 3.1 22 159-180 2-23 (195)
183 2ck3_D ATP synthase subunit be 96.1 0.025 8.6E-07 50.5 9.4 65 141-211 142-207 (482)
184 1z6g_A Guanylate kinase; struc 96.1 0.0026 8.8E-08 51.0 2.8 24 157-180 23-46 (218)
185 3e70_C DPA, signal recognition 96.1 0.024 8.1E-07 48.4 9.0 26 155-180 127-152 (328)
186 1aky_A Adenylate kinase; ATP:A 96.1 0.0031 1.1E-07 50.4 3.3 24 157-180 4-27 (220)
187 2pt5_A Shikimate kinase, SK; a 96.1 0.003 1E-07 48.0 3.0 22 159-180 2-23 (168)
188 1nn5_A Similar to deoxythymidy 96.1 0.0035 1.2E-07 49.5 3.5 24 157-180 9-32 (215)
189 3ney_A 55 kDa erythrocyte memb 96.1 0.0032 1.1E-07 49.8 3.1 25 156-180 18-42 (197)
190 1zd8_A GTP:AMP phosphotransfer 96.1 0.0032 1.1E-07 50.6 3.1 25 156-180 6-30 (227)
191 2z0h_A DTMP kinase, thymidylat 96.1 0.0082 2.8E-07 46.6 5.4 22 159-180 2-23 (197)
192 2wwf_A Thymidilate kinase, put 96.1 0.0036 1.2E-07 49.4 3.3 24 157-180 10-33 (212)
193 1htw_A HI0065; nucleotide-bind 96.1 0.004 1.4E-07 47.4 3.3 24 157-180 33-56 (158)
194 1j8m_F SRP54, signal recogniti 96.0 0.027 9.4E-07 47.3 8.8 24 157-180 98-121 (297)
195 4a74_A DNA repair and recombin 96.0 0.0039 1.3E-07 49.8 3.4 25 156-180 24-48 (231)
196 4a1f_A DNAB helicase, replicat 96.0 0.048 1.6E-06 46.7 10.3 88 156-247 45-168 (338)
197 2f6r_A COA synthase, bifunctio 96.0 0.0043 1.5E-07 51.8 3.7 24 155-178 73-96 (281)
198 1s96_A Guanylate kinase, GMP k 96.0 0.0038 1.3E-07 50.2 3.2 25 156-180 15-39 (219)
199 1gtv_A TMK, thymidylate kinase 96.0 0.002 6.8E-08 51.0 1.5 22 159-180 2-23 (214)
200 1rj9_A FTSY, signal recognitio 96.0 0.0041 1.4E-07 52.6 3.5 25 156-180 101-125 (304)
201 4e22_A Cytidylate kinase; P-lo 96.0 0.0039 1.3E-07 51.1 3.3 23 157-179 27-49 (252)
202 2grj_A Dephospho-COA kinase; T 96.0 0.0048 1.6E-07 48.5 3.6 26 155-180 10-35 (192)
203 1zak_A Adenylate kinase; ATP:A 96.0 0.0037 1.3E-07 50.0 3.0 24 157-180 5-28 (222)
204 2ga8_A Hypothetical 39.9 kDa p 96.0 0.0069 2.4E-07 52.2 4.8 44 135-180 4-47 (359)
205 2ehv_A Hypothetical protein PH 96.0 0.0038 1.3E-07 50.5 3.1 23 156-178 29-51 (251)
206 3be4_A Adenylate kinase; malar 96.0 0.0034 1.2E-07 50.1 2.7 24 157-180 5-28 (217)
207 3tif_A Uncharacterized ABC tra 96.0 0.0038 1.3E-07 50.7 3.0 23 157-179 31-53 (235)
208 2onk_A Molybdate/tungstate ABC 95.9 0.0042 1.4E-07 50.7 3.2 22 158-179 25-46 (240)
209 1m7g_A Adenylylsulfate kinase; 95.9 0.005 1.7E-07 48.9 3.6 24 157-180 25-48 (211)
210 2pcj_A ABC transporter, lipopr 95.9 0.0041 1.4E-07 50.1 3.1 22 158-179 31-52 (224)
211 3fb4_A Adenylate kinase; psych 95.9 0.0041 1.4E-07 49.4 3.0 22 159-180 2-23 (216)
212 1sq5_A Pantothenate kinase; P- 95.9 0.0055 1.9E-07 51.8 3.9 25 156-180 79-103 (308)
213 2v54_A DTMP kinase, thymidylat 95.9 0.0049 1.7E-07 48.3 3.4 23 158-180 5-27 (204)
214 2i3b_A HCR-ntpase, human cance 95.9 0.004 1.4E-07 48.9 2.7 22 159-180 3-24 (189)
215 3tlx_A Adenylate kinase 2; str 95.9 0.0053 1.8E-07 50.0 3.5 25 156-180 28-52 (243)
216 1vht_A Dephospho-COA kinase; s 95.9 0.0057 2E-07 48.7 3.6 23 157-179 4-26 (218)
217 2f1r_A Molybdopterin-guanine d 95.9 0.0026 8.9E-08 49.1 1.5 23 158-180 3-25 (171)
218 3lnc_A Guanylate kinase, GMP k 95.8 0.0028 9.5E-08 51.1 1.7 21 158-178 28-48 (231)
219 2hf9_A Probable hydrogenase ni 95.8 0.0058 2E-07 48.7 3.6 38 137-180 24-61 (226)
220 2og2_A Putative signal recogni 95.8 0.011 3.7E-07 51.1 5.5 25 156-180 156-180 (359)
221 3dl0_A Adenylate kinase; phosp 95.8 0.0048 1.6E-07 49.0 3.0 22 159-180 2-23 (216)
222 3b85_A Phosphate starvation-in 95.8 0.0044 1.5E-07 49.4 2.7 23 158-180 23-45 (208)
223 2cbz_A Multidrug resistance-as 95.8 0.005 1.7E-07 50.1 3.0 23 158-180 32-54 (237)
224 1fx0_B ATP synthase beta chain 95.8 0.038 1.3E-06 49.6 8.8 88 158-246 166-277 (498)
225 1b0u_A Histidine permease; ABC 95.8 0.005 1.7E-07 50.9 3.0 23 157-179 32-54 (262)
226 1tue_A Replication protein E1; 95.7 0.009 3.1E-07 47.4 4.3 37 139-180 45-81 (212)
227 3gfo_A Cobalt import ATP-bindi 95.7 0.0052 1.8E-07 51.2 3.0 22 158-179 35-56 (275)
228 2j37_W Signal recognition part 95.7 0.13 4.3E-06 46.5 12.2 42 139-180 80-124 (504)
229 3b9q_A Chloroplast SRP recepto 95.7 0.0063 2.2E-07 51.4 3.5 25 156-180 99-123 (302)
230 1ji0_A ABC transporter; ATP bi 95.7 0.0055 1.9E-07 49.9 3.0 23 158-180 33-55 (240)
231 1g6h_A High-affinity branched- 95.7 0.0055 1.9E-07 50.5 3.0 22 158-179 34-55 (257)
232 4eaq_A DTMP kinase, thymidylat 95.7 0.015 5E-07 47.0 5.5 27 156-182 25-51 (229)
233 2ged_A SR-beta, signal recogni 95.7 0.01 3.5E-07 45.8 4.4 26 155-180 46-71 (193)
234 3ake_A Cytidylate kinase; CMP 95.7 0.0064 2.2E-07 47.7 3.1 22 159-180 4-25 (208)
235 2wsm_A Hydrogenase expression/ 95.7 0.0071 2.4E-07 48.0 3.4 41 134-180 13-53 (221)
236 2d2e_A SUFC protein; ABC-ATPas 95.7 0.0061 2.1E-07 49.9 3.1 22 158-179 30-51 (250)
237 1np6_A Molybdopterin-guanine d 95.7 0.0065 2.2E-07 47.0 3.1 25 156-180 5-29 (174)
238 2olj_A Amino acid ABC transpor 95.6 0.0059 2E-07 50.5 3.0 24 157-180 50-73 (263)
239 4g1u_C Hemin import ATP-bindin 95.6 0.0059 2E-07 50.6 3.0 22 158-179 38-59 (266)
240 2pze_A Cystic fibrosis transme 95.6 0.0061 2.1E-07 49.3 3.0 23 158-180 35-57 (229)
241 1mv5_A LMRA, multidrug resista 95.6 0.0066 2.2E-07 49.5 3.2 23 157-179 28-50 (243)
242 1sgw_A Putative ABC transporte 95.6 0.0054 1.8E-07 49.1 2.6 23 158-180 36-58 (214)
243 2ff7_A Alpha-hemolysin translo 95.6 0.0062 2.1E-07 49.8 3.0 23 158-180 36-58 (247)
244 1zu4_A FTSY; GTPase, signal re 95.6 0.017 5.9E-07 49.1 5.8 26 155-180 103-128 (320)
245 2zu0_C Probable ATP-dependent 95.6 0.0065 2.2E-07 50.3 3.1 24 157-180 46-69 (267)
246 3fwy_A Light-independent proto 95.6 0.0071 2.4E-07 51.4 3.4 24 156-179 47-70 (314)
247 1vpl_A ABC transporter, ATP-bi 95.6 0.0066 2.2E-07 50.0 3.0 24 157-180 41-64 (256)
248 2eyu_A Twitching motility prot 95.6 0.0075 2.5E-07 49.8 3.3 24 157-180 25-48 (261)
249 3r20_A Cytidylate kinase; stru 95.6 0.0071 2.4E-07 49.1 3.1 24 157-180 9-32 (233)
250 2ixe_A Antigen peptide transpo 95.6 0.0067 2.3E-07 50.4 3.0 24 157-180 45-68 (271)
251 2ghi_A Transport protein; mult 95.5 0.0068 2.3E-07 50.0 3.0 23 158-180 47-69 (260)
252 3nwj_A ATSK2; P loop, shikimat 95.5 0.0061 2.1E-07 50.0 2.6 23 158-180 49-71 (250)
253 1a7j_A Phosphoribulokinase; tr 95.5 0.0043 1.5E-07 52.0 1.7 25 156-180 4-28 (290)
254 1e4v_A Adenylate kinase; trans 95.5 0.0079 2.7E-07 47.7 3.2 22 159-180 2-23 (214)
255 3d3q_A TRNA delta(2)-isopenten 95.5 0.008 2.7E-07 51.5 3.3 23 158-180 8-30 (340)
256 3gmt_A Adenylate kinase; ssgci 95.5 0.045 1.5E-06 44.2 7.6 25 156-180 7-31 (230)
257 2yz2_A Putative ABC transporte 95.5 0.0072 2.5E-07 50.0 3.0 23 158-180 34-56 (266)
258 1q3t_A Cytidylate kinase; nucl 95.5 0.0087 3E-07 48.4 3.4 27 154-180 13-39 (236)
259 1ak2_A Adenylate kinase isoenz 95.5 0.0086 2.9E-07 48.3 3.4 24 157-180 16-39 (233)
260 2qi9_C Vitamin B12 import ATP- 95.5 0.0073 2.5E-07 49.5 3.0 23 158-180 27-49 (249)
261 1g41_A Heat shock protein HSLU 95.5 0.017 5.9E-07 51.3 5.6 52 130-181 15-74 (444)
262 2ihy_A ABC transporter, ATP-bi 95.5 0.0073 2.5E-07 50.4 3.0 23 158-180 48-70 (279)
263 1ls1_A Signal recognition part 95.5 0.056 1.9E-06 45.3 8.5 25 156-180 97-121 (295)
264 2nq2_C Hypothetical ABC transp 95.5 0.0076 2.6E-07 49.5 3.0 23 158-180 32-54 (253)
265 3zvl_A Bifunctional polynucleo 95.5 0.0089 3E-07 52.8 3.7 26 155-180 256-281 (416)
266 3vr4_D V-type sodium ATPase su 95.5 0.029 9.9E-07 49.8 6.8 88 159-246 153-259 (465)
267 3sop_A Neuronal-specific septi 95.5 0.0084 2.9E-07 49.7 3.3 22 159-180 4-25 (270)
268 3a8t_A Adenylate isopentenyltr 95.5 0.0097 3.3E-07 50.9 3.7 25 156-180 39-63 (339)
269 2xb4_A Adenylate kinase; ATP-b 95.4 0.0081 2.8E-07 48.2 3.1 22 159-180 2-23 (223)
270 2vp4_A Deoxynucleoside kinase; 95.4 0.0087 3E-07 48.2 3.3 26 155-180 18-43 (230)
271 1ltq_A Polynucleotide kinase; 95.4 0.009 3.1E-07 50.0 3.3 23 158-180 3-25 (301)
272 3cmu_A Protein RECA, recombina 95.4 0.02 6.8E-07 59.6 6.3 84 155-245 1425-1515(2050)
273 2v9p_A Replication protein E1; 95.4 0.0094 3.2E-07 50.4 3.3 25 156-180 125-149 (305)
274 3bgw_A DNAB-like replicative h 95.4 0.1 3.4E-06 46.4 10.1 39 156-196 196-234 (444)
275 3end_A Light-independent proto 95.3 0.0098 3.4E-07 50.0 3.4 39 140-180 26-64 (307)
276 3crm_A TRNA delta(2)-isopenten 95.3 0.0096 3.3E-07 50.7 3.2 23 158-180 6-28 (323)
277 2r6a_A DNAB helicase, replicat 95.3 0.073 2.5E-06 47.4 9.2 90 156-248 202-326 (454)
278 3exa_A TRNA delta(2)-isopenten 95.3 0.011 3.7E-07 50.1 3.5 23 158-180 4-26 (322)
279 1nij_A Hypothetical protein YJ 95.3 0.011 3.6E-07 50.3 3.5 25 156-180 3-27 (318)
280 3k1j_A LON protease, ATP-depen 95.3 0.012 4E-07 54.6 4.0 43 130-180 41-83 (604)
281 3foz_A TRNA delta(2)-isopenten 95.3 0.013 4.3E-07 49.6 3.8 25 156-180 9-33 (316)
282 1oix_A RAS-related protein RAB 95.3 0.011 3.8E-07 45.9 3.2 24 157-180 29-52 (191)
283 2pjz_A Hypothetical protein ST 95.2 0.01 3.4E-07 49.1 3.0 23 158-180 31-53 (263)
284 3fvq_A Fe(3+) IONS import ATP- 95.2 0.011 3.9E-07 51.0 3.2 22 158-179 31-52 (359)
285 1yrb_A ATP(GTP)binding protein 95.2 0.015 5.3E-07 47.3 3.9 27 154-180 11-37 (262)
286 1nlf_A Regulatory protein REPA 95.1 0.011 3.8E-07 49.0 3.1 24 157-180 30-53 (279)
287 3ld9_A DTMP kinase, thymidylat 95.1 0.031 1.1E-06 44.9 5.6 26 156-181 20-45 (223)
288 1svm_A Large T antigen; AAA+ f 95.1 0.012 4.1E-07 51.2 3.4 25 156-180 168-192 (377)
289 1q57_A DNA primase/helicase; d 95.1 0.1 3.5E-06 47.0 9.7 50 156-208 241-290 (503)
290 2f9l_A RAB11B, member RAS onco 95.1 0.012 4E-07 46.0 2.9 24 157-180 5-28 (199)
291 2bbs_A Cystic fibrosis transme 95.1 0.012 4.1E-07 49.4 3.1 24 157-180 64-87 (290)
292 2ocp_A DGK, deoxyguanosine kin 95.1 0.015 5.1E-07 47.1 3.6 25 157-181 2-26 (241)
293 2q6t_A DNAB replication FORK h 95.1 0.15 5.3E-06 45.1 10.5 51 156-209 199-249 (444)
294 2qe7_A ATP synthase subunit al 95.1 0.037 1.3E-06 49.7 6.4 84 158-247 163-266 (502)
295 1cr0_A DNA primase/helicase; R 95.1 0.013 4.3E-07 49.0 3.2 24 157-180 35-58 (296)
296 2dyk_A GTP-binding protein; GT 95.1 0.015 5.2E-07 43.2 3.4 23 158-180 2-24 (161)
297 1u0j_A DNA replication protein 95.1 0.027 9.3E-07 46.5 5.1 38 139-180 90-127 (267)
298 3p32_A Probable GTPase RV1496/ 95.0 0.022 7.5E-07 49.1 4.7 38 139-180 65-102 (355)
299 4edh_A DTMP kinase, thymidylat 95.0 0.042 1.4E-06 43.8 6.0 25 157-181 6-30 (213)
300 2zej_A Dardarin, leucine-rich 95.0 0.012 4E-07 45.3 2.7 22 159-180 4-25 (184)
301 3l0o_A Transcription terminati 95.0 0.073 2.5E-06 46.4 7.8 100 140-247 163-274 (427)
302 2dr3_A UPF0273 protein PH0284; 95.0 0.02 6.9E-07 46.0 4.1 40 156-197 22-61 (247)
303 3nh6_A ATP-binding cassette SU 95.0 0.0085 2.9E-07 50.7 1.9 23 157-179 80-102 (306)
304 2wji_A Ferrous iron transport 95.0 0.017 5.8E-07 43.5 3.4 23 158-180 4-26 (165)
305 2yv5_A YJEQ protein; hydrolase 94.9 0.023 7.9E-07 47.8 4.5 32 138-178 155-186 (302)
306 2r9v_A ATP synthase subunit al 94.9 0.044 1.5E-06 49.3 6.4 86 158-247 176-279 (515)
307 1z47_A CYSA, putative ABC-tran 94.9 0.014 4.7E-07 50.4 3.1 22 158-179 42-63 (355)
308 3kta_A Chromosome segregation 94.9 0.016 5.4E-07 44.5 3.2 22 158-179 27-48 (182)
309 3tui_C Methionine import ATP-b 94.9 0.014 4.8E-07 50.5 3.1 23 157-179 54-76 (366)
310 1p5z_B DCK, deoxycytidine kina 94.9 0.012 4E-07 48.4 2.5 25 156-180 23-47 (263)
311 2ce2_X GTPase HRAS; signaling 94.9 0.016 5.5E-07 43.0 3.0 22 159-180 5-26 (166)
312 3rlf_A Maltose/maltodextrin im 94.9 0.015 5E-07 50.7 3.1 22 158-179 30-51 (381)
313 2yyz_A Sugar ABC transporter, 94.8 0.015 5.1E-07 50.3 3.1 22 158-179 30-51 (359)
314 2it1_A 362AA long hypothetical 94.8 0.015 5.2E-07 50.3 3.1 23 157-179 29-51 (362)
315 2v3c_C SRP54, signal recogniti 94.8 0.027 9.2E-07 49.9 4.7 42 139-180 78-122 (432)
316 3mfy_A V-type ATP synthase alp 94.8 0.066 2.2E-06 48.7 7.2 84 158-247 228-336 (588)
317 2wjg_A FEOB, ferrous iron tran 94.8 0.021 7.2E-07 43.7 3.5 24 157-180 7-30 (188)
318 1g29_1 MALK, maltose transport 94.8 0.016 5.4E-07 50.4 3.1 22 158-179 30-51 (372)
319 1v43_A Sugar-binding transport 94.7 0.017 5.7E-07 50.2 3.1 23 157-179 37-59 (372)
320 1z2a_A RAS-related protein RAB 94.7 0.023 7.7E-07 42.5 3.5 24 157-180 5-28 (168)
321 1svi_A GTP-binding protein YSX 94.7 0.025 8.5E-07 43.6 3.8 25 156-180 22-46 (195)
322 2c61_A A-type ATP synthase non 94.6 0.048 1.6E-06 48.6 5.9 88 158-245 153-259 (469)
323 3lv8_A DTMP kinase, thymidylat 94.6 0.051 1.7E-06 44.0 5.6 25 157-181 27-51 (236)
324 2www_A Methylmalonic aciduria 94.6 0.022 7.5E-07 49.0 3.6 24 156-179 73-96 (349)
325 2aka_B Dynamin-1; fusion prote 94.6 0.052 1.8E-06 45.1 5.8 42 139-180 8-49 (299)
326 2ewv_A Twitching motility prot 94.6 0.022 7.6E-07 49.5 3.6 24 157-180 136-159 (372)
327 2lkc_A Translation initiation 94.6 0.025 8.5E-07 42.8 3.5 25 156-180 7-31 (178)
328 3eph_A TRNA isopentenyltransfe 94.6 0.022 7.5E-07 49.9 3.5 23 158-180 3-25 (409)
329 3pqc_A Probable GTP-binding pr 94.6 0.028 9.6E-07 43.1 3.8 26 156-181 22-47 (195)
330 1u8z_A RAS-related protein RAL 94.6 0.02 7E-07 42.6 2.9 23 158-180 5-27 (168)
331 3vr4_A V-type sodium ATPase ca 94.5 0.11 3.8E-06 47.4 8.1 50 141-199 221-270 (600)
332 2gza_A Type IV secretion syste 94.5 0.017 5.9E-07 49.9 2.8 23 158-180 176-198 (361)
333 3vkw_A Replicase large subunit 94.5 0.077 2.6E-06 47.0 6.9 27 153-179 157-183 (446)
334 2ck3_A ATP synthase subunit al 94.5 0.06 2E-06 48.4 6.3 90 158-247 163-274 (510)
335 1fx0_A ATP synthase alpha chai 94.5 0.042 1.4E-06 49.4 5.2 84 158-247 164-267 (507)
336 3gd7_A Fusion complex of cysti 94.5 0.02 7E-07 50.0 3.2 23 157-179 47-69 (390)
337 3jvv_A Twitching mobility prot 94.5 0.022 7.5E-07 49.2 3.3 23 158-180 124-146 (356)
338 3d31_A Sulfate/molybdate ABC t 94.5 0.014 4.7E-07 50.3 2.0 23 158-180 27-49 (348)
339 2qm8_A GTPase/ATPase; G protei 94.5 0.025 8.4E-07 48.5 3.6 24 156-179 54-77 (337)
340 3cmu_A Protein RECA, recombina 94.5 0.086 2.9E-06 55.0 8.0 86 156-248 382-474 (2050)
341 2nzj_A GTP-binding protein REM 94.5 0.028 9.6E-07 42.3 3.6 24 157-180 4-27 (175)
342 3con_A GTPase NRAS; structural 94.5 0.021 7.3E-07 43.8 2.9 23 158-180 22-44 (190)
343 1lw7_A Transcriptional regulat 94.5 0.019 6.4E-07 49.7 2.9 24 157-180 170-193 (365)
344 1nrj_B SR-beta, signal recogni 94.5 0.025 8.6E-07 44.6 3.4 26 156-181 11-36 (218)
345 2erx_A GTP-binding protein DI- 94.5 0.022 7.5E-07 42.6 2.9 23 158-180 4-26 (172)
346 3gqb_B V-type ATP synthase bet 94.5 0.1 3.6E-06 46.3 7.6 89 158-246 148-262 (464)
347 1c1y_A RAS-related protein RAP 94.5 0.022 7.6E-07 42.4 2.9 22 159-180 5-26 (167)
348 1z08_A RAS-related protein RAB 94.4 0.022 7.6E-07 42.7 2.9 24 157-180 6-29 (170)
349 1u0l_A Probable GTPase ENGC; p 94.4 0.036 1.2E-06 46.6 4.4 34 138-180 159-192 (301)
350 1kao_A RAP2A; GTP-binding prot 94.4 0.023 7.7E-07 42.3 2.9 23 158-180 4-26 (167)
351 1ek0_A Protein (GTP-binding pr 94.4 0.023 7.8E-07 42.4 2.9 22 159-180 5-26 (170)
352 1z0j_A RAB-22, RAS-related pro 94.4 0.023 7.8E-07 42.5 2.9 23 158-180 7-29 (170)
353 1pui_A ENGB, probable GTP-bind 94.4 0.016 5.5E-07 45.4 2.1 25 156-180 25-49 (210)
354 4tmk_A Protein (thymidylate ki 94.4 0.065 2.2E-06 42.7 5.7 24 158-181 4-27 (213)
355 3q72_A GTP-binding protein RAD 94.4 0.021 7.2E-07 42.6 2.7 22 159-180 4-25 (166)
356 2h92_A Cytidylate kinase; ross 94.4 0.02 7E-07 45.3 2.7 23 158-180 4-26 (219)
357 2pt7_A CAG-ALFA; ATPase, prote 94.4 0.02 6.9E-07 48.9 2.8 23 158-180 172-194 (330)
358 2gj8_A MNME, tRNA modification 94.4 0.03 1E-06 42.6 3.5 23 158-180 5-27 (172)
359 1oxx_K GLCV, glucose, ABC tran 94.3 0.012 4.3E-07 50.7 1.4 22 158-179 32-53 (353)
360 1g16_A RAS-related protein SEC 94.3 0.025 8.6E-07 42.3 3.0 23 158-180 4-26 (170)
361 3cmw_A Protein RECA, recombina 94.3 0.088 3E-06 54.1 7.7 80 158-244 384-470 (1706)
362 3v9p_A DTMP kinase, thymidylat 94.3 0.045 1.5E-06 44.1 4.6 25 157-181 25-49 (227)
363 2qmh_A HPR kinase/phosphorylas 94.3 0.027 9.4E-07 44.4 3.2 23 158-180 35-57 (205)
364 1wms_A RAB-9, RAB9, RAS-relate 94.3 0.024 8.3E-07 42.8 2.9 25 156-180 6-30 (177)
365 2qnr_A Septin-2, protein NEDD5 94.3 0.022 7.4E-07 48.0 2.8 20 160-179 21-40 (301)
366 1ky3_A GTP-binding protein YPT 94.3 0.031 1.1E-06 42.3 3.5 25 156-180 7-31 (182)
367 1m7b_A RND3/RHOE small GTP-bin 94.3 0.026 8.8E-07 43.3 3.0 25 156-180 6-30 (184)
368 2fn4_A P23, RAS-related protei 94.3 0.036 1.2E-06 41.9 3.8 25 156-180 8-32 (181)
369 2obl_A ESCN; ATPase, hydrolase 94.2 0.026 9E-07 48.5 3.2 25 157-181 71-95 (347)
370 1r8s_A ADP-ribosylation factor 94.2 0.026 8.9E-07 42.0 2.8 21 160-180 3-23 (164)
371 3t1o_A Gliding protein MGLA; G 94.2 0.026 9E-07 43.3 2.9 24 157-180 14-37 (198)
372 3tw8_B RAS-related protein RAB 94.2 0.023 7.9E-07 43.0 2.6 25 156-180 8-32 (181)
373 1ypw_A Transitional endoplasmi 94.2 0.047 1.6E-06 52.3 5.2 54 128-181 475-535 (806)
374 2cxx_A Probable GTP-binding pr 94.2 0.027 9.2E-07 43.1 3.0 22 159-180 3-24 (190)
375 1fzq_A ADP-ribosylation factor 94.2 0.033 1.1E-06 42.6 3.5 25 156-180 15-39 (181)
376 1r2q_A RAS-related protein RAB 94.2 0.027 9.3E-07 42.0 2.9 23 158-180 7-29 (170)
377 3oaa_A ATP synthase subunit al 94.2 0.11 3.9E-06 46.5 7.3 83 158-246 163-265 (513)
378 3hjn_A DTMP kinase, thymidylat 94.2 0.078 2.7E-06 41.6 5.6 23 159-181 2-24 (197)
379 3ihw_A Centg3; RAS, centaurin, 94.1 0.028 9.5E-07 43.3 2.9 24 157-180 20-43 (184)
380 1z0f_A RAB14, member RAS oncog 94.1 0.029 9.7E-07 42.4 2.9 26 156-181 14-39 (179)
381 3q85_A GTP-binding protein REM 94.1 0.035 1.2E-06 41.5 3.4 22 158-179 3-24 (169)
382 2hxs_A RAB-26, RAS-related pro 94.1 0.047 1.6E-06 41.2 4.2 24 157-180 6-29 (178)
383 2bme_A RAB4A, RAS-related prot 94.1 0.03 1E-06 42.7 3.0 25 156-180 9-33 (186)
384 2orw_A Thymidine kinase; TMTK, 94.1 0.031 1.1E-06 43.4 3.1 23 158-180 4-26 (184)
385 2y8e_A RAB-protein 6, GH09086P 94.1 0.03 1E-06 42.2 3.0 23 158-180 15-37 (179)
386 4dsu_A GTPase KRAS, isoform 2B 94.1 0.029 9.9E-07 42.8 2.9 23 158-180 5-27 (189)
387 1m2o_B GTP-binding protein SAR 94.1 0.03 1E-06 43.3 3.0 23 158-180 24-46 (190)
388 2qag_B Septin-6, protein NEDD5 94.0 0.027 9.2E-07 49.8 2.9 21 160-180 45-65 (427)
389 3iev_A GTP-binding protein ERA 94.0 0.033 1.1E-06 47.0 3.3 27 154-180 7-33 (308)
390 2axn_A 6-phosphofructo-2-kinas 94.0 0.034 1.2E-06 50.5 3.7 25 156-180 34-58 (520)
391 3bc1_A RAS-related protein RAB 94.0 0.031 1.1E-06 42.7 2.9 25 156-180 10-34 (195)
392 1f6b_A SAR1; gtpases, N-termin 94.0 0.037 1.3E-06 43.1 3.4 23 158-180 26-48 (198)
393 3c5c_A RAS-like protein 12; GD 94.0 0.031 1.1E-06 43.0 2.9 25 156-180 20-44 (187)
394 1tq4_A IIGP1, interferon-induc 94.0 0.036 1.2E-06 48.8 3.6 24 156-179 68-91 (413)
395 2oil_A CATX-8, RAS-related pro 93.9 0.031 1.1E-06 43.0 2.9 24 157-180 25-48 (193)
396 2npi_A Protein CLP1; CLP1-PCF1 93.9 0.027 9.3E-07 50.3 2.8 23 158-180 139-161 (460)
397 1ega_A Protein (GTP-binding pr 93.9 0.035 1.2E-06 46.7 3.4 25 156-180 7-31 (301)
398 2a9k_A RAS-related protein RAL 93.9 0.032 1.1E-06 42.4 2.9 24 157-180 18-41 (187)
399 2efe_B Small GTP-binding prote 93.9 0.032 1.1E-06 42.3 2.9 24 157-180 12-35 (181)
400 1mh1_A RAC1; GTP-binding, GTPa 93.9 0.033 1.1E-06 42.4 2.9 23 158-180 6-28 (186)
401 1upt_A ARL1, ADP-ribosylation 93.9 0.043 1.5E-06 41.0 3.6 24 157-180 7-30 (171)
402 3t5g_A GTP-binding protein RHE 93.9 0.034 1.2E-06 42.2 3.0 24 157-180 6-29 (181)
403 1jwy_B Dynamin A GTPase domain 93.9 0.077 2.6E-06 44.4 5.5 41 139-180 7-47 (315)
404 1p9r_A General secretion pathw 93.9 0.034 1.2E-06 49.1 3.3 24 157-180 167-190 (418)
405 2qu8_A Putative nucleolar GTP- 93.9 0.043 1.5E-06 43.7 3.7 25 156-180 28-52 (228)
406 3kkq_A RAS-related protein M-R 93.9 0.05 1.7E-06 41.3 4.0 25 156-180 17-41 (183)
407 2p67_A LAO/AO transport system 93.8 0.039 1.3E-06 47.2 3.5 24 156-179 55-78 (341)
408 2fg5_A RAB-22B, RAS-related pr 93.8 0.036 1.2E-06 42.8 3.0 24 157-180 23-46 (192)
409 3ch4_B Pmkase, phosphomevalona 93.8 0.051 1.7E-06 42.9 3.9 25 156-180 10-34 (202)
410 3upu_A ATP-dependent DNA helic 93.8 0.045 1.5E-06 48.8 4.0 23 159-181 47-69 (459)
411 2iwr_A Centaurin gamma 1; ANK 93.8 0.028 9.6E-07 42.6 2.3 24 157-180 7-30 (178)
412 3bwd_D RAC-like GTP-binding pr 93.8 0.036 1.2E-06 42.0 2.9 23 158-180 9-31 (182)
413 2g6b_A RAS-related protein RAB 93.8 0.036 1.2E-06 41.9 2.9 24 157-180 10-33 (180)
414 1vg8_A RAS-related protein RAB 93.7 0.036 1.2E-06 43.1 2.9 25 156-180 7-31 (207)
415 3k53_A Ferrous iron transport 93.7 0.046 1.6E-06 45.0 3.7 24 157-180 3-26 (271)
416 2atv_A RERG, RAS-like estrogen 93.7 0.036 1.2E-06 42.9 2.9 24 157-180 28-51 (196)
417 4hlc_A DTMP kinase, thymidylat 93.7 0.087 3E-06 41.6 5.2 24 158-181 3-26 (205)
418 2bov_A RAla, RAS-related prote 93.7 0.052 1.8E-06 42.1 3.8 25 156-180 13-37 (206)
419 3f9v_A Minichromosome maintena 93.7 0.025 8.7E-07 52.2 2.3 22 159-180 329-350 (595)
420 3cr8_A Sulfate adenylyltranfer 93.7 0.027 9.1E-07 51.6 2.4 24 157-180 369-392 (552)
421 1zbd_A Rabphilin-3A; G protein 93.7 0.037 1.3E-06 43.0 2.9 24 157-180 8-31 (203)
422 3dz8_A RAS-related protein RAB 93.7 0.038 1.3E-06 42.6 2.9 24 157-180 23-46 (191)
423 3llu_A RAS-related GTP-binding 93.7 0.038 1.3E-06 42.8 3.0 25 156-180 19-43 (196)
424 2rcn_A Probable GTPase ENGC; Y 93.7 0.037 1.3E-06 47.8 3.1 23 158-180 216-238 (358)
425 4bas_A ADP-ribosylation factor 93.7 0.042 1.4E-06 42.4 3.2 26 155-180 15-40 (199)
426 1moz_A ARL1, ADP-ribosylation 93.7 0.038 1.3E-06 41.9 2.9 25 156-180 17-41 (183)
427 1ksh_A ARF-like protein 2; sma 93.7 0.037 1.3E-06 42.3 2.8 26 156-181 17-42 (186)
428 3tkl_A RAS-related protein RAB 93.7 0.038 1.3E-06 42.5 2.9 26 156-181 15-40 (196)
429 4akg_A Glutathione S-transfera 93.6 0.18 6E-06 54.3 8.6 61 160-244 1270-1345(2695)
430 3oes_A GTPase rhebl1; small GT 93.6 0.04 1.4E-06 42.9 3.0 25 156-180 23-47 (201)
431 2ew1_A RAS-related protein RAB 93.6 0.04 1.4E-06 43.2 3.0 24 157-180 26-49 (201)
432 1m8p_A Sulfate adenylyltransfe 93.6 0.045 1.5E-06 50.3 3.8 26 155-180 394-419 (573)
433 3cbq_A GTP-binding protein REM 93.6 0.034 1.1E-06 43.3 2.6 23 156-178 22-44 (195)
434 1gwn_A RHO-related GTP-binding 93.6 0.04 1.4E-06 43.3 3.0 24 157-180 28-51 (205)
435 3euj_A Chromosome partition pr 93.6 0.039 1.3E-06 49.5 3.2 22 158-179 30-51 (483)
436 2gf9_A RAS-related protein RAB 93.6 0.04 1.4E-06 42.3 2.9 24 157-180 22-45 (189)
437 3lxx_A GTPase IMAP family memb 93.6 0.048 1.6E-06 43.9 3.5 26 156-181 28-53 (239)
438 3ozx_A RNAse L inhibitor; ATP 93.6 0.036 1.2E-06 50.6 3.0 23 158-180 295-317 (538)
439 3fdi_A Uncharacterized protein 93.6 0.048 1.6E-06 43.0 3.4 24 158-181 7-30 (201)
440 2dpy_A FLII, flagellum-specifi 93.6 0.04 1.4E-06 48.9 3.2 25 157-181 157-181 (438)
441 1zd9_A ADP-ribosylation factor 93.6 0.041 1.4E-06 42.3 2.9 24 157-180 22-45 (188)
442 3reg_A RHO-like small GTPase; 93.5 0.041 1.4E-06 42.4 2.9 25 156-180 22-46 (194)
443 1cp2_A CP2, nitrogenase iron p 93.5 0.045 1.5E-06 44.8 3.3 23 158-180 2-24 (269)
444 2o52_A RAS-related protein RAB 93.5 0.041 1.4E-06 42.8 2.9 25 156-180 24-48 (200)
445 1yqt_A RNAse L inhibitor; ATP- 93.5 0.039 1.3E-06 50.4 3.1 23 158-180 313-335 (538)
446 2fh5_B SR-beta, signal recogni 93.5 0.044 1.5E-06 43.0 3.1 25 156-180 6-30 (214)
447 1x6v_B Bifunctional 3'-phospho 93.5 0.051 1.7E-06 50.4 3.9 25 156-180 51-75 (630)
448 3clv_A RAB5 protein, putative; 93.5 0.062 2.1E-06 41.3 3.9 24 157-180 7-30 (208)
449 2a5j_A RAS-related protein RAB 93.5 0.042 1.4E-06 42.3 2.9 24 157-180 21-44 (191)
450 1x3s_A RAS-related protein RAB 93.5 0.043 1.5E-06 42.1 2.9 23 158-180 16-38 (195)
451 1yqt_A RNAse L inhibitor; ATP- 93.5 0.04 1.4E-06 50.3 3.1 24 157-180 47-70 (538)
452 2gf0_A GTP-binding protein DI- 93.5 0.045 1.5E-06 42.2 3.0 24 157-180 8-31 (199)
453 2bcg_Y Protein YP2, GTP-bindin 93.5 0.045 1.5E-06 42.7 3.0 24 157-180 8-31 (206)
454 1z06_A RAS-related protein RAB 93.4 0.044 1.5E-06 42.1 2.9 25 156-180 19-43 (189)
455 1bif_A 6-phosphofructo-2-kinas 93.4 0.046 1.6E-06 48.9 3.4 24 157-180 39-62 (469)
456 3ozx_A RNAse L inhibitor; ATP 93.4 0.042 1.4E-06 50.1 3.2 25 156-180 24-48 (538)
457 2p5s_A RAS and EF-hand domain 93.4 0.043 1.5E-06 42.6 2.9 25 156-180 27-51 (199)
458 2h17_A ADP-ribosylation factor 93.4 0.044 1.5E-06 41.8 2.9 24 157-180 21-44 (181)
459 1f2t_A RAD50 ABC-ATPase; DNA d 93.4 0.054 1.9E-06 40.4 3.3 21 158-178 24-44 (149)
460 2afh_E Nitrogenase iron protei 93.4 0.051 1.8E-06 45.1 3.5 24 157-180 2-25 (289)
461 2cjw_A GTP-binding protein GEM 93.4 0.045 1.5E-06 42.4 2.9 23 157-179 6-28 (192)
462 2q3h_A RAS homolog gene family 93.4 0.043 1.5E-06 42.5 2.8 24 157-180 20-43 (201)
463 1zj6_A ADP-ribosylation factor 93.4 0.066 2.3E-06 40.9 3.9 24 157-180 16-39 (187)
464 3gqb_A V-type ATP synthase alp 93.4 0.082 2.8E-06 48.0 4.9 37 158-198 222-258 (578)
465 2fz4_A DNA repair protein RAD2 93.4 0.32 1.1E-05 39.1 8.1 90 160-260 111-217 (237)
466 2j1l_A RHO-related GTP-binding 93.3 0.046 1.6E-06 43.1 2.9 24 157-180 34-57 (214)
467 2h57_A ADP-ribosylation factor 93.3 0.041 1.4E-06 42.3 2.6 25 157-181 21-45 (190)
468 2il1_A RAB12; G-protein, GDP, 93.3 0.041 1.4E-06 42.5 2.6 24 157-180 26-49 (192)
469 2qag_C Septin-7; cell cycle, c 93.3 0.041 1.4E-06 48.5 2.8 21 160-180 34-54 (418)
470 2fv8_A H6, RHO-related GTP-bin 93.3 0.049 1.7E-06 42.6 3.0 23 158-180 26-48 (207)
471 2oap_1 GSPE-2, type II secreti 93.2 0.043 1.5E-06 49.7 2.9 23 158-180 261-283 (511)
472 3cph_A RAS-related protein SEC 93.2 0.049 1.7E-06 42.5 2.9 24 157-180 20-43 (213)
473 1g8f_A Sulfate adenylyltransfe 93.2 0.065 2.2E-06 48.5 4.0 27 156-182 394-420 (511)
474 2atx_A Small GTP binding prote 93.2 0.053 1.8E-06 41.7 3.0 24 157-180 18-41 (194)
475 2b6h_A ADP-ribosylation factor 93.2 0.064 2.2E-06 41.5 3.5 24 157-180 29-52 (192)
476 2r8r_A Sensor protein; KDPD, P 93.1 0.051 1.7E-06 43.7 2.9 22 159-180 8-29 (228)
477 2hup_A RAS-related protein RAB 93.1 0.054 1.8E-06 42.2 3.0 25 156-180 28-52 (201)
478 3bk7_A ABC transporter ATP-bin 93.1 0.048 1.6E-06 50.5 3.1 23 158-180 383-405 (607)
479 2gco_A H9, RHO-related GTP-bin 93.1 0.055 1.9E-06 42.1 3.0 23 158-180 26-48 (201)
480 4gzl_A RAS-related C3 botulinu 93.1 0.055 1.9E-06 42.3 3.0 24 157-180 30-53 (204)
481 2xtp_A GTPase IMAP family memb 93.0 0.068 2.3E-06 43.5 3.6 25 156-180 21-45 (260)
482 3b60_A Lipid A export ATP-bind 93.0 0.056 1.9E-06 49.8 3.3 24 157-180 369-392 (582)
483 2j0v_A RAC-like GTP-binding pr 93.0 0.058 2E-06 42.2 3.0 25 156-180 8-32 (212)
484 3j16_B RLI1P; ribosome recycli 93.0 0.052 1.8E-06 50.2 3.1 24 157-180 103-126 (608)
485 1wf3_A GTP-binding protein; GT 93.0 0.065 2.2E-06 45.0 3.5 25 156-180 6-30 (301)
486 3j16_B RLI1P; ribosome recycli 93.0 0.052 1.8E-06 50.2 3.1 23 158-180 379-401 (608)
487 2zts_A Putative uncharacterize 92.9 0.06 2E-06 43.2 3.0 24 156-179 29-52 (251)
488 4dhe_A Probable GTP-binding pr 92.9 0.041 1.4E-06 43.4 2.0 26 156-181 28-53 (223)
489 3szr_A Interferon-induced GTP- 92.9 0.053 1.8E-06 50.2 3.0 27 154-180 42-68 (608)
490 3tmk_A Thymidylate kinase; pho 92.9 0.076 2.6E-06 42.4 3.5 25 157-181 5-29 (216)
491 2fu5_C RAS-related protein RAB 92.8 0.033 1.1E-06 42.4 1.3 24 157-180 8-31 (183)
492 2x77_A ADP-ribosylation factor 92.8 0.048 1.6E-06 41.8 2.3 24 157-180 22-45 (189)
493 2f7s_A C25KG, RAS-related prot 92.8 0.058 2E-06 42.4 2.8 24 157-180 25-48 (217)
494 1dek_A Deoxynucleoside monopho 92.8 0.068 2.3E-06 43.5 3.2 23 158-180 2-24 (241)
495 3bk7_A ABC transporter ATP-bin 92.8 0.056 1.9E-06 50.1 3.0 24 157-180 117-140 (607)
496 2qtf_A Protein HFLX, GTP-bindi 92.8 0.061 2.1E-06 46.5 3.1 26 156-181 178-203 (364)
497 3q3j_B RHO-related GTP-binding 92.7 0.064 2.2E-06 42.3 2.9 23 158-180 28-50 (214)
498 3t5d_A Septin-7; GTP-binding p 92.7 0.058 2E-06 44.5 2.7 23 158-180 9-31 (274)
499 3b5x_A Lipid A export ATP-bind 92.7 0.06 2.1E-06 49.6 3.1 24 157-180 369-392 (582)
500 1t9h_A YLOQ, probable GTPase E 92.6 0.029 9.9E-07 47.4 0.8 23 158-180 174-196 (307)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.85 E-value=4.9e-21 Score=176.79 Aligned_cols=119 Identities=18% Similarity=0.178 Sum_probs=99.9
Q ss_pred ccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhh--ccccccccceeEEEeeCCCC--CHHHHHHHH
Q 041190 133 YGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFN--DAGVKKYFSFRACAYVSEDF--DAVGVTKVI 208 (261)
Q Consensus 133 ~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~f~~~~wv~v~~~~--~~~~i~~~i 208 (261)
+||+.++++|.++|... .+...++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.+ +...++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~---~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc---cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 59999999999999764 234689999999999999999999998 67788999999999999985 789999999
Q ss_pred HHHhcCCC--------CCCCHHHHHHHHHHHhCCC-eEEEEEeCCCCCChhhHHH
Q 041190 209 LQAAAGSA--------DVNDLNLLQLQLENQLKNK-KFLLVLDDMWSENYDVWTN 254 (261)
Q Consensus 209 ~~~l~~~~--------~~~~~~~~~~~l~~~l~~k-r~LiVlDdvw~~~~~~w~~ 254 (261)
+.+++... +..+...+...+++.|.++ ||||||||||+.+...|..
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~ 262 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ 262 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc
Confidence 99998321 1234567889999999996 9999999999974334543
No 2
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.73 E-value=9.5e-18 Score=122.83 Aligned_cols=81 Identities=19% Similarity=0.310 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc--cccChhHHHHHHHHHHHHhhhHhHHHHHHHH
Q 041190 12 TVEMLVEKLALEVIQLFARQEQIEADLKKWEELLVIIKVVLDDAEEK--QITKPLTKKWLGKLQNLAYDAEDMLDEFATE 89 (261)
Q Consensus 12 ~v~~l~~~l~~~~~~~~~~~~~v~~~i~~L~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~lr~~ayd~ed~ld~~~~~ 89 (261)
+++++++||.+++.+++..+.+|+++++.|+++|+.|++||.+++.. +..++.++.|+.+||+++||+||+||+|.++
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999987 4578999999999999999999999999998
Q ss_pred HHH
Q 041190 90 AFR 92 (261)
Q Consensus 90 ~~~ 92 (261)
...
T Consensus 82 ~~~ 84 (115)
T 3qfl_A 82 VDG 84 (115)
T ss_dssp HHH
T ss_pred hcc
Confidence 853
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.70 E-value=3.4e-17 Score=157.30 Aligned_cols=118 Identities=19% Similarity=0.123 Sum_probs=95.0
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccce-eEEEeeCCCCCHHHHHHHHH
Q 041190 131 EVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSF-RACAYVSEDFDAVGVTKVIL 209 (261)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~v~~~~~~~~i~~~i~ 209 (261)
..+||+.+++.|.++|...+ ..++|+|+||||+||||||+.+|++.+++.+|+. ++|+++++.++...++..|+
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 34999999999999997532 3689999999999999999999998778889997 78999999999888888888
Q ss_pred HHhc--C-C-CCC--------CCHHHHHHHHHHHh---CCCeEEEEEeCCCCCChhhHHHh
Q 041190 210 QAAA--G-S-ADV--------NDLNLLQLQLENQL---KNKKFLLVLDDMWSENYDVWTNL 255 (261)
Q Consensus 210 ~~l~--~-~-~~~--------~~~~~~~~~l~~~l---~~kr~LiVlDdvw~~~~~~w~~l 255 (261)
..++ . . ... .+.+.+...++..| .+||+||||||||+. +.|+.+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f 262 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF 262 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh
Confidence 7654 1 1 111 12345566777766 789999999999995 578765
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.65 E-value=3.6e-16 Score=155.81 Aligned_cols=123 Identities=20% Similarity=0.148 Sum_probs=95.4
Q ss_pred CCCCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcccc-ccccc-eeEEEeeCCCCC--HH
Q 041190 127 VDEEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGV-KKYFS-FRACAYVSEDFD--AV 202 (261)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f~-~~~wv~v~~~~~--~~ 202 (261)
.....++||+.++++|.++|... +...++|+|+||||+||||||+++|++.+. ..+|. ...|+++++..+ ..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~----~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKL----NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTT----TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhc----cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 34567999999999999999753 246789999999999999999999998543 44564 567999998543 34
Q ss_pred HHHHHHHHHhcCC-----CCCCCHHHHHHHHHHHhCCC--eEEEEEeCCCCCChhhHHHh
Q 041190 203 GVTKVILQAAAGS-----ADVNDLNLLQLQLENQLKNK--KFLLVLDDMWSENYDVWTNL 255 (261)
Q Consensus 203 ~i~~~i~~~l~~~-----~~~~~~~~~~~~l~~~l~~k--r~LiVlDdvw~~~~~~w~~l 255 (261)
..+..++..+... ....+.+.+...++..+.++ ||||||||||+. +.|..+
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~ 254 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF 254 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh
Confidence 4466677777621 23456788899999999887 999999999986 466544
No 5
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.60 E-value=2.3e-15 Score=139.82 Aligned_cols=115 Identities=21% Similarity=0.204 Sum_probs=88.3
Q ss_pred CCCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcccc-ccccc-eeEEEeeCCCCCHHHHH
Q 041190 128 DEEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGV-KKYFS-FRACAYVSEDFDAVGVT 205 (261)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f~-~~~wv~v~~~~~~~~i~ 205 (261)
.++.++||+.+++.|.++|... ....++++|+||||+||||||+.+|++..+ ..+|. .++|+++++. +...++
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~ 196 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKL----KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLL 196 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTS----TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcc----cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHH
Confidence 4567999999999999999753 235789999999999999999999998655 67894 7899999875 344444
Q ss_pred HHHH---HHhcC-----CCCCCCHHHHHHHHHHHhCC--CeEEEEEeCCCCC
Q 041190 206 KVIL---QAAAG-----SADVNDLNLLQLQLENQLKN--KKFLLVLDDMWSE 247 (261)
Q Consensus 206 ~~i~---~~l~~-----~~~~~~~~~~~~~l~~~l~~--kr~LiVlDdvw~~ 247 (261)
..+. ..++. .....+...+...++..+.+ +++||||||||+.
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~ 248 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS 248 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH
Confidence 4443 34431 12345667788888888865 7899999999985
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.22 E-value=3.7e-11 Score=106.23 Aligned_cols=119 Identities=18% Similarity=0.125 Sum_probs=84.8
Q ss_pred CCCccccccchHHHHHHHh-hCCCCCC-CCCceEEeE--eecCCCChHHHHHHHhhccccc---cccc-eeEEEeeCCCC
Q 041190 128 DEEEVYGREKDKEVIVGLL-LGDDLNS-GPGFSVIPI--TGMGGLGKTTLAQLVFNDAGVK---KYFS-FRACAYVSEDF 199 (261)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L-~~~~~~~-~~~~~vi~I--~G~~GiGKTtLa~~v~~~~~~~---~~f~-~~~wv~v~~~~ 199 (261)
.+..++||+.+++.|.++| ..... + ......+.| +|++|+|||||++.+++..... ..|. ..+|+++.+..
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~-~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLS-GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP 98 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHT-SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCC
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhc-CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCC
Confidence 3467999999999999988 43110 0 012345555 9999999999999999873221 1123 24688877777
Q ss_pred CHHHHHHHHHHHhcCC-C-CCCCHHHHHHHHHHHhC--CCeEEEEEeCCCCC
Q 041190 200 DAVGVTKVILQAAAGS-A-DVNDLNLLQLQLENQLK--NKKFLLVLDDMWSE 247 (261)
Q Consensus 200 ~~~~i~~~i~~~l~~~-~-~~~~~~~~~~~l~~~l~--~kr~LiVlDdvw~~ 247 (261)
+...++..++..++.. . ...+...+...+.+.+. +++++|||||+|..
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l 150 (412)
T 1w5s_A 99 NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSM 150 (412)
T ss_dssp SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHH
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHH
Confidence 8889999999998832 1 23345666667777664 78999999999884
No 7
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.12 E-value=5.7e-10 Score=97.51 Aligned_cols=119 Identities=18% Similarity=0.122 Sum_probs=87.9
Q ss_pred CCCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcccccc---ccc-eeEEEeeCCCCCHHH
Q 041190 128 DEEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKK---YFS-FRACAYVSEDFDAVG 203 (261)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~f~-~~~wv~v~~~~~~~~ 203 (261)
.+..++||+.+++.+..+|...- .....+.+.|+|++|+||||+|+.+++...... ... ..+|+++....+...
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 34779999999999999885531 123456889999999999999999998632110 112 356888888888899
Q ss_pred HHHHHHHHhcCC--CCCCCHHHHHHHHHHHh--CCCeEEEEEeCCCCCC
Q 041190 204 VTKVILQAAAGS--ADVNDLNLLQLQLENQL--KNKKFLLVLDDMWSEN 248 (261)
Q Consensus 204 i~~~i~~~l~~~--~~~~~~~~~~~~l~~~l--~~kr~LiVlDdvw~~~ 248 (261)
++..++..++.. ....+...+...+...+ .+++.+|||||+....
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~ 143 (387)
T 2v1u_A 95 VASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLP 143 (387)
T ss_dssp HHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHH
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhc
Confidence 999999999832 23344666677777777 4568999999998763
No 8
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.10 E-value=6e-10 Score=97.62 Aligned_cols=129 Identities=16% Similarity=0.077 Sum_probs=90.9
Q ss_pred CCCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHH
Q 041190 128 DEEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKV 207 (261)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~ 207 (261)
.+..++||+.+++.|..++........+..+.+.|+|++|+|||||++.+++....... -..+|++++...+...++..
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHHH
Confidence 34679999999999999886521001122348999999999999999999987322111 13567888887788899999
Q ss_pred HHHHhcCC--CCCCCHHHHHHHHHHHhC--CCeEEEEEeCCCCCChhhHHHhhc
Q 041190 208 ILQAAAGS--ADVNDLNLLQLQLENQLK--NKKFLLVLDDMWSENYDVWTNLCK 257 (261)
Q Consensus 208 i~~~l~~~--~~~~~~~~~~~~l~~~l~--~kr~LiVlDdvw~~~~~~w~~l~~ 257 (261)
++..++.. ....+...+...+...+. +++.+|+|||+...++.....|..
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~ 147 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIR 147 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHH
Confidence 99888732 123345566666666653 678999999999886555555543
No 9
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.06 E-value=3.6e-10 Score=99.00 Aligned_cols=118 Identities=15% Similarity=0.022 Sum_probs=86.4
Q ss_pred CCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccc----ccc--ceeEEEeeCCCC-CH
Q 041190 129 EEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVK----KYF--SFRACAYVSEDF-DA 201 (261)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f--~~~~wv~v~~~~-~~ 201 (261)
+..++||+.+++.+.++|.... .+...+.+.|+|++|+||||||+.+++...-. ..+ ...+|++++... +.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFV--KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHH--TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCCChHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 4779999999999998876521 12345689999999999999999999863111 112 235688877766 88
Q ss_pred HHHHHHHHHHhc-C--CCCCCCHHHHHHHHHHHhCCCeEEEEEeCCCCCC
Q 041190 202 VGVTKVILQAAA-G--SADVNDLNLLQLQLENQLKNKKFLLVLDDMWSEN 248 (261)
Q Consensus 202 ~~i~~~i~~~l~-~--~~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~~ 248 (261)
..++..++..+. . .....+...+...+...+..++.+|||||++...
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~ 146 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLV 146 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHH
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhc
Confidence 888999998884 2 1223445667778888888777799999997753
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.99 E-value=4.3e-10 Score=98.18 Aligned_cols=117 Identities=19% Similarity=0.146 Sum_probs=83.4
Q ss_pred CCCCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcccccccc---ceeEEEeeCCCCCHHH
Q 041190 127 VDEEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYF---SFRACAYVSEDFDAVG 203 (261)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~v~~~~~~~~ 203 (261)
..+..++||+.+++.|.+++...- .......+.|+|++|+|||||++.+++.. ...+ ...+|++++...+...
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~--~~~~~~~vli~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~~~i~~~~~~~~~~ 92 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLY--REEKPNNIFIYGLTGTGKTAVVKFVLSKL--HKKFLGKFKHVYINTRQIDTPYR 92 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGG--GTCCCCCEEEEECTTSSHHHHHHHHHHHH--HHHTCSSCEEEEEEHHHHCSHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHH--cCCCCCeEEEECCCCCCHHHHHHHHHHHH--HHHhcCCceEEEEECCCCCCHHH
Confidence 344779999999999999887421 12345688999999999999999999863 2222 1356787777667777
Q ss_pred HHHHHHHHhcCC--CCCCCHHHHHHHHHHHhC--CCeEEEEEeCCCCC
Q 041190 204 VTKVILQAAAGS--ADVNDLNLLQLQLENQLK--NKKFLLVLDDMWSE 247 (261)
Q Consensus 204 i~~~i~~~l~~~--~~~~~~~~~~~~l~~~l~--~kr~LiVlDdvw~~ 247 (261)
++..++..++.. ....+...+...+.+.+. +++.+|||||++..
T Consensus 93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l 140 (386)
T 2qby_A 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAF 140 (386)
T ss_dssp HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHH
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhh
Confidence 888887777622 123345565666666663 45899999999774
No 11
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.93 E-value=1.9e-09 Score=92.83 Aligned_cols=106 Identities=14% Similarity=0.216 Sum_probs=74.8
Q ss_pred CCCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCC------CH
Q 041190 128 DEEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDF------DA 201 (261)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~------~~ 201 (261)
.+..++||+.+.+.|.+++... +++.|+|++|+|||||++.+++.. . .+|+++.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCH
Confidence 4467999999999999988541 689999999999999999998863 1 5677665432 45
Q ss_pred HHHHHHHHHHhcC-----------------C--CCCCCHHHHHHHHHHHhCC-CeEEEEEeCCCCCC
Q 041190 202 VGVTKVILQAAAG-----------------S--ADVNDLNLLQLQLENQLKN-KKFLLVLDDMWSEN 248 (261)
Q Consensus 202 ~~i~~~i~~~l~~-----------------~--~~~~~~~~~~~~l~~~l~~-kr~LiVlDdvw~~~ 248 (261)
..++..+...+.. . ....+..++...+.+.... ++++|||||++...
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~ 141 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLR 141 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGG
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHh
Confidence 5666666554431 0 0123556666666665543 38999999998853
No 12
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.84 E-value=7.3e-09 Score=88.57 Aligned_cols=116 Identities=14% Similarity=-0.011 Sum_probs=79.4
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcccccc---cc-c-eeEEEeeCCCCCHHHHH
Q 041190 131 EVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKK---YF-S-FRACAYVSEDFDAVGVT 205 (261)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~f-~-~~~wv~v~~~~~~~~i~ 205 (261)
.+.||+++.+.|...|...- .+...+.+.|+|++|+|||++++.|.+...... .. . ..+++++....+...++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i--~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSL--MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 38899999999998887632 134567889999999999999999998743211 11 1 34678887878888999
Q ss_pred HHHHHHhcCC-C-CCCCHHHHHHHHHHH--hCCCeEEEEEeCCCCCC
Q 041190 206 KVILQAAAGS-A-DVNDLNLLQLQLENQ--LKNKKFLLVLDDMWSEN 248 (261)
Q Consensus 206 ~~i~~~l~~~-~-~~~~~~~~~~~l~~~--l~~kr~LiVlDdvw~~~ 248 (261)
..|++++... . .......+...+... -.+++++|+||++....
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 9999999622 2 222333333333322 24678999999998864
No 13
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.75 E-value=3.1e-08 Score=85.41 Aligned_cols=104 Identities=16% Similarity=0.217 Sum_probs=69.3
Q ss_pred CCCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCC-----CCHH
Q 041190 128 DEEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSED-----FDAV 202 (261)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-----~~~~ 202 (261)
.+..++||+.+.+.|.+ +.. +++.|+|++|+|||+|++.+.+... . ..+|+++... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchhhccccCCCHH
Confidence 45679999999999999 631 5899999999999999999998632 1 2467776642 2444
Q ss_pred HHHHHHHHHhc-------------CC------C-----------CCCCHHHHHHHHHHHhCCCeEEEEEeCCCCC
Q 041190 203 GVTKVILQAAA-------------GS------A-----------DVNDLNLLQLQLENQLKNKKFLLVLDDMWSE 247 (261)
Q Consensus 203 ~i~~~i~~~l~-------------~~------~-----------~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~ 247 (261)
.++..+.+.+. .. . .......+...+.+.-. ++++|||||+...
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~ 149 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQEL 149 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGG
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHh
Confidence 44444444331 00 0 12344555555554433 4999999999774
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.67 E-value=1.4e-07 Score=75.38 Aligned_cols=107 Identities=18% Similarity=0.111 Sum_probs=65.6
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccc-eeEEEeeCCCCCHHHHHHHH
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFS-FRACAYVSEDFDAVGVTKVI 208 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~~~i~~~i 208 (261)
..++|++..++.+.+++... ....+.|+|++|+|||++|+.+++.... ..+. ....++.+...+...+...
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~- 88 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLFG-ENWRDNFIEMNASDERGIDVVRHK- 88 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHHHHG-GGGGGGEEEEETTCTTCHHHHHHH-
T ss_pred HHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHhc-cccccceEEeccccccChHHHHHH-
Confidence 46899999999999999753 2234899999999999999999876311 1222 2233444443333332222
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHhCCCeEEEEEeCCCCCChhhHHHhhc
Q 041190 209 LQAAAGSADVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVWTNLCK 257 (261)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~~~~~w~~l~~ 257 (261)
+..+.... ....+++.+|||||+.......++.+..
T Consensus 89 ~~~~~~~~-------------~~~~~~~~vliiDe~~~l~~~~~~~l~~ 124 (226)
T 2chg_A 89 IKEFARTA-------------PIGGAPFKIIFLDEADALTADAQAALRR 124 (226)
T ss_dssp HHHHHTSC-------------CSTTCSCEEEEEETGGGSCHHHHHHHHH
T ss_pred HHHHhccc-------------CCCccCceEEEEeChhhcCHHHHHHHHH
Confidence 22111000 0113578899999998886555555543
No 15
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.60 E-value=1.6e-07 Score=75.93 Aligned_cols=47 Identities=23% Similarity=0.288 Sum_probs=39.4
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
..++|++..++.|..++.... ..+.+.|+|++|+||||||+.+++..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999997532 23588999999999999999998763
No 16
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.49 E-value=1.9e-07 Score=72.88 Aligned_cols=45 Identities=20% Similarity=0.298 Sum_probs=38.2
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..++|++..++.+.+.+... ....+.|+|++|+|||+||+.+.+.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999998653 2356789999999999999999876
No 17
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.44 E-value=3.9e-07 Score=77.48 Aligned_cols=107 Identities=17% Similarity=0.169 Sum_probs=66.3
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccc-eeEEEeeCCCCCHHHHHHHH
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFS-FRACAYVSEDFDAVGVTKVI 208 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~~~i~~~i 208 (261)
..++|++..++.|..++... +.+.+.++|++|+||||+|+.+++.... ..+. ..++++.+...+... .+++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~-i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELLG-RSYADGVLELNASDDRGIDV-VRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHHG-GGHHHHEEEECTTSCCSHHH-HHTH
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhcC-CcccCCEEEecCccccChHH-HHHH
Confidence 46899999999999998653 2233889999999999999999876311 1121 233444444333222 2223
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHh-CCCeEEEEEeCCCCCChhhHHHhhc
Q 041190 209 LQAAAGSADVNDLNLLQLQLENQL-KNKKFLLVLDDMWSENYDVWTNLCK 257 (261)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~l~~~l-~~kr~LiVlDdvw~~~~~~w~~l~~ 257 (261)
+..+.... ..+ .+++.+|||||++......++.|..
T Consensus 93 ~~~~~~~~-------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~ 129 (323)
T 1sxj_B 93 IKHFAQKK-------------LHLPPGKHKIVILDEADSMTAGAQQALRR 129 (323)
T ss_dssp HHHHHHBC-------------CCCCTTCCEEEEEESGGGSCHHHHHTTHH
T ss_pred HHHHHhcc-------------ccCCCCCceEEEEECcccCCHHHHHHHHH
Confidence 33222000 011 4568999999999876555655543
No 18
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=1.5e-06 Score=73.93 Aligned_cols=107 Identities=14% Similarity=0.072 Sum_probs=63.4
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccc-eeEEEeeCCCCCHHHHHHHH
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFS-FRACAYVSEDFDAVGVTKVI 208 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~~~i~~~i 208 (261)
.+++|++..++.+..++... ....+.++|++|+||||+|+.+++..... .+. ....++.+...+... +...
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~-~~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELFGE-NWRHNFLELNASDERGINV-IREK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHHGG-GHHHHEEEEETTCHHHHHT-THHH
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhcCC-cccCceEEeeccccCchHH-HHHH
Confidence 45899999999999998753 23348999999999999999998862111 111 123344333211111 1111
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHhCCCeEEEEEeCCCCCChhhHHHhhc
Q 041190 209 LQAAAGSADVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVWTNLCK 257 (261)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~~~~~w~~l~~ 257 (261)
+..+... .....+++.+||+||+.....+.++.|..
T Consensus 97 ~~~~~~~-------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~ 132 (327)
T 1iqp_A 97 VKEFART-------------KPIGGASFKIIFLDEADALTQDAQQALRR 132 (327)
T ss_dssp HHHHHHS-------------CCGGGCSCEEEEEETGGGSCHHHHHHHHH
T ss_pred HHHHHhh-------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHH
Confidence 1111100 00112578899999998887666665543
No 19
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.24 E-value=1.6e-06 Score=68.85 Aligned_cols=96 Identities=19% Similarity=0.220 Sum_probs=51.0
Q ss_pred hHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCCCC
Q 041190 138 DKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGSAD 217 (261)
Q Consensus 138 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~~~ 217 (261)
..+.+..++.... .......+.|+|++|+|||+||+.+++... .......+++++ .+...+...+.
T Consensus 37 ~~~~~~~~~~~~~--~~~~~~~~~l~G~~GtGKT~la~~i~~~~~--~~~~~~~~~~~~------~~~~~~~~~~~---- 102 (202)
T 2w58_A 37 AIRFAERFVAEYE--PGKKMKGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLIVYVP------ELFRELKHSLQ---- 102 (202)
T ss_dssp HHHHHHHHHHHCC--SSCCCCEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEEHH------HHHHHHHHC------
T ss_pred HHHHHHHHHHHhh--hccCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEhH------HHHHHHHHHhc----
Confidence 4455566665432 111226789999999999999999998732 222234555543 33333332221
Q ss_pred CCCHHHHHHHHHHHhCCCeEEEEEeCCCCCChhhH
Q 041190 218 VNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVW 252 (261)
Q Consensus 218 ~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~~~~~w 252 (261)
..........+.. .-+|||||++......|
T Consensus 103 ~~~~~~~~~~~~~-----~~~lilDei~~~~~~~~ 132 (202)
T 2w58_A 103 DQTMNEKLDYIKK-----VPVLMLDDLGAEAMSSW 132 (202)
T ss_dssp -CCCHHHHHHHHH-----SSEEEEEEECCC---CC
T ss_pred cchHHHHHHHhcC-----CCEEEEcCCCCCcCCHH
Confidence 1122333333322 23999999977543333
No 20
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.24 E-value=1e-06 Score=68.45 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=38.0
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..++|++...+.+.+.+... ....+.|+|++|+|||+||+.+.+.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999998653 2356689999999999999999876
No 21
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.11 E-value=1e-05 Score=62.97 Aligned_cols=93 Identities=19% Similarity=0.115 Sum_probs=50.7
Q ss_pred ccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcC
Q 041190 135 REKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAG 214 (261)
Q Consensus 135 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~ 214 (261)
.....+.+.+++..-. .+....+.++|++|+|||||++.+++.......+. ..++ +..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~---~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFN---PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCC---GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc---ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcC
Confidence 3444555555554321 12346889999999999999999988632111221 2233 344445444444431
Q ss_pred CCCCCCHHHHHHHHHHHhCCCeEEEEEeCCCC
Q 041190 215 SADVNDLNLLQLQLENQLKNKKFLLVLDDMWS 246 (261)
Q Consensus 215 ~~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~ 246 (261)
.... .....+ . +.-+|||||++.
T Consensus 89 ~~~~----~~~~~~----~-~~~llilDE~~~ 111 (180)
T 3ec2_A 89 GKDT----KFLKTV----L-NSPVLVLDDLGS 111 (180)
T ss_dssp TCCS----HHHHHH----H-TCSEEEEETCSS
T ss_pred chHH----HHHHHh----c-CCCEEEEeCCCC
Confidence 1111 222222 1 456889999984
No 22
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.10 E-value=2.6e-06 Score=72.63 Aligned_cols=50 Identities=28% Similarity=0.377 Sum_probs=38.1
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..++|++..+..+..++..... .......+.|+|++|+|||++|+.+++.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 5689999998888888753110 0123356889999999999999999886
No 23
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.07 E-value=6.5e-06 Score=62.02 Aligned_cols=46 Identities=20% Similarity=0.081 Sum_probs=35.0
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 131 EVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++|+......+.+.+..-. .....|.|+|++|+|||++|+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHh----CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 47899989999888875422 12234789999999999999999876
No 24
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.06 E-value=9.8e-06 Score=67.77 Aligned_cols=54 Identities=28% Similarity=0.172 Sum_probs=39.8
Q ss_pred CCCCccccccchHHHHHHHhhCCCCC-------CCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 127 VDEEEVYGREKDKEVIVGLLLGDDLN-------SGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 127 ~~~~~~~gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..-.+++|.+..++.|.+.+...-.. +......+.|+|++|+|||+||+.+.+.
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34457899999999998877431000 0123456899999999999999999886
No 25
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.04 E-value=1.5e-05 Score=65.70 Aligned_cols=51 Identities=22% Similarity=0.138 Sum_probs=35.6
Q ss_pred CccccccchHHHHHHHhhC---CCC---CCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLG---DDL---NSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~---~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+..++.|.+++.. ... -+....+.+.++|++|+|||++|+.+.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4688988887777665432 110 01123456789999999999999999886
No 26
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.03 E-value=1.3e-05 Score=67.78 Aligned_cols=105 Identities=15% Similarity=0.116 Sum_probs=62.4
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccc-eeEEEeeCCCCCHHHHHHHH
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFS-FRACAYVSEDFDAVGVTKVI 208 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~~~i~~~i 208 (261)
.+++|++..++.+.+++... ....+.++|++|+|||++|+.+.+... ...+. ....++.+...+...
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~----- 84 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDV----- 84 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTTT-----
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChHH-----
Confidence 45899999999998888543 233389999999999999999987621 11111 123344433211111
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHH--h-CCCeEEEEEeCCCCCChhhHHHhhcc
Q 041190 209 LQAAAGSADVNDLNLLQLQLENQ--L-KNKKFLLVLDDMWSENYDVWTNLCKP 258 (261)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~l~~~--l-~~kr~LiVlDdvw~~~~~~w~~l~~~ 258 (261)
.......+... + .+++.+||+||+.....+.++.|...
T Consensus 85 ------------~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~ 125 (319)
T 2chq_A 85 ------------VRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRT 125 (319)
T ss_dssp ------------SSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGG
T ss_pred ------------HHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHH
Confidence 11111111101 1 25688999999988765555555543
No 27
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.98 E-value=2e-05 Score=68.28 Aligned_cols=47 Identities=23% Similarity=0.288 Sum_probs=38.8
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
..++|++..++.|...+.... ..+.+.|+|++|+||||+|+.+.+..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999986532 23578899999999999999998763
No 28
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.98 E-value=2.6e-05 Score=67.62 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=36.4
Q ss_pred CccccccchHHH---HHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccc
Q 041190 130 EEVYGREKDKEV---IVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAG 182 (261)
Q Consensus 130 ~~~~gr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 182 (261)
..++|++..++. +.+.+... ....+.+.++|++|+|||++|+.+.+...
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~----~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREG----KIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTT----CCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred hhccChHHHHHHHHHHHHHHHcC----CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 469999888766 44445432 22246889999999999999999998743
No 29
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.98 E-value=1.8e-05 Score=70.80 Aligned_cols=97 Identities=15% Similarity=0.176 Sum_probs=55.8
Q ss_pred CccccccchH---HHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCC-CCHHHHH
Q 041190 130 EEVYGREKDK---EVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSED-FDAVGVT 205 (261)
Q Consensus 130 ~~~~gr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~i~ 205 (261)
..++|.+..+ ..|...+... ++..+.++|++|+||||||+.+.+. ....| +.++.. ..... +
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f-----~~l~a~~~~~~~-i 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANADV-----ERISAVTSGVKE-I 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCEE-----EEEETTTCCHHH-H
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCCe-----EEEEeccCCHHH-H
Confidence 4578877666 6677777543 3467899999999999999999987 32222 222221 22222 2
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHhCCCeEEEEEeCCCCCChhhHHHh
Q 041190 206 KVILQAAAGSADVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVWTNL 255 (261)
Q Consensus 206 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~~~~~w~~l 255 (261)
+.++.... .....+++.+|+||++........+.|
T Consensus 92 r~~~~~a~---------------~~~~~~~~~iLfIDEI~~l~~~~q~~L 126 (447)
T 3pvs_A 92 REAIERAR---------------QNRNAGRRTILFVDEVHRFNKSQQDAF 126 (447)
T ss_dssp HHHHHHHH---------------HHHHTTCCEEEEEETTTCC------CC
T ss_pred HHHHHHHH---------------HhhhcCCCcEEEEeChhhhCHHHHHHH
Confidence 22222111 111246788999999988754444433
No 30
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.97 E-value=3.3e-05 Score=65.84 Aligned_cols=101 Identities=19% Similarity=0.141 Sum_probs=63.5
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHH
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVIL 209 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~ 209 (261)
.+++|.+..++.|.+++.... ..+++.++|++|+|||++|+.+.+... . ....++.+.. .. ..++.++
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~l~--~---~~~~i~~~~~-~~-~~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHDVN--A---DMMFVNGSDC-KI-DFVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHHTT--E---EEEEEETTTC-CH-HHHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHhC--C---CEEEEccccc-CH-HHHHHHH
Confidence 468999999999999997532 346788899999999999999988631 1 1334554442 22 2222222
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHhCCCeEEEEEeCCCCCC-hhhHHHhh
Q 041190 210 QAAAGSADVNDLNLLQLQLENQLKNKKFLLVLDDMWSEN-YDVWTNLC 256 (261)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~~-~~~w~~l~ 256 (261)
....... .+.+++.+|+|||+.... .+..+.|.
T Consensus 94 ~~~~~~~--------------~~~~~~~vliiDEi~~l~~~~~~~~L~ 127 (324)
T 3u61_B 94 TNFASAA--------------SFDGRQKVIVIDEFDRSGLAESQRHLR 127 (324)
T ss_dssp HHHHHBC--------------CCSSCEEEEEEESCCCGGGHHHHHHHH
T ss_pred HHHHhhc--------------ccCCCCeEEEEECCcccCcHHHHHHHH
Confidence 2221000 012477899999998875 44444443
No 31
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.96 E-value=1.3e-05 Score=68.86 Aligned_cols=51 Identities=25% Similarity=0.328 Sum_probs=39.6
Q ss_pred CCccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 129 EEEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-..++|++..++.+..++..... .......+.|+|++|+|||+||+.+.+.
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34689999999999988865210 1224456899999999999999999876
No 32
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.94 E-value=8.1e-06 Score=61.35 Aligned_cols=47 Identities=15% Similarity=0.099 Sum_probs=33.4
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.++|+...+..+.+.+..-. ....-+.|+|++|+|||++|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~----~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAA----KRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHH----TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 357899888888888775421 11234779999999999999999876
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.92 E-value=1.8e-05 Score=66.89 Aligned_cols=51 Identities=25% Similarity=0.127 Sum_probs=36.3
Q ss_pred ccccccchHHHHHHHhhCC---------CCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 131 EVYGREKDKEVIVGLLLGD---------DLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~~---------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.++|.+..++.|.+++... ..........+.++|++|+|||++|+.+.+..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4889888888888765421 00012345578999999999999999887653
No 34
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.92 E-value=4.6e-05 Score=65.43 Aligned_cols=115 Identities=17% Similarity=0.089 Sum_probs=63.7
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccce-eEEEeeCCCCCHHHHHHHH
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSF-RACAYVSEDFDAVGVTKVI 208 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~v~~~~~~~~i~~~i 208 (261)
..++|++..++.+..++.... ...+.++|++|+||||+|+.+.+.......+.. ...++.+....... +.+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VREK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HTTH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HHHH
Confidence 468999999999999986532 223889999999999999999876321111221 23344444333332 2222
Q ss_pred HHHhc-CCC-CCCCHHHHHHHHHHHhCCCeEEEEEeCCCCCChhhHHHhh
Q 041190 209 LQAAA-GSA-DVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVWTNLC 256 (261)
Q Consensus 209 ~~~l~-~~~-~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~~~~~w~~l~ 256 (261)
+..+. ... ..... .....-.++.-+|++|++....+.....|.
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll 154 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALR 154 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHH
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHH
Confidence 32222 111 00000 001111245568888888777654444443
No 35
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.86 E-value=8.2e-05 Score=63.63 Aligned_cols=52 Identities=27% Similarity=0.290 Sum_probs=37.8
Q ss_pred CCccccccchHHHHHHHhhC----CCC--CCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 129 EEEVYGREKDKEVIVGLLLG----DDL--NSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~----~~~--~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.++.|.+..++.|.+.+.. .+. ......+-+.++|++|+|||+||+.+.+.
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 35688998888888876632 000 01223467889999999999999999986
No 36
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.84 E-value=0.00013 Score=58.26 Aligned_cols=87 Identities=17% Similarity=0.077 Sum_probs=53.9
Q ss_pred CceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHH----------HHHHhc--CCCCCCCHHH
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKV----------ILQAAA--GSADVNDLNL 223 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~----------i~~~l~--~~~~~~~~~~ 223 (261)
.-.++.|+|++|+|||||+..+.. . .-...+|+.....++...+... ++..+. ..........
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 446899999999999999999987 1 1124667776654555444331 122222 1112222334
Q ss_pred HHHHHHHHhCCCeEEEEEeCCCCC
Q 041190 224 LQLQLENQLKNKKFLLVLDDMWSE 247 (261)
Q Consensus 224 ~~~~l~~~l~~kr~LiVlDdvw~~ 247 (261)
....++..+..+.-+||||.+-..
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHHH
Confidence 555666666556789999998765
No 37
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.83 E-value=5.8e-05 Score=64.49 Aligned_cols=51 Identities=29% Similarity=0.242 Sum_probs=38.7
Q ss_pred CCccccccchHHHHHHHhhCC-------CCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 129 EEEVYGREKDKEVIVGLLLGD-------DLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~-------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|.+..++.|.+.+... .. .....+-+.++|++|+|||+||+.+.+.
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 356899999999998877210 10 1223457899999999999999999886
No 38
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.83 E-value=6.2e-05 Score=63.26 Aligned_cols=52 Identities=19% Similarity=0.225 Sum_probs=38.3
Q ss_pred CCccccccchHHHHHHHhhCCC------CCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 129 EEEVYGREKDKEVIVGLLLGDD------LNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|.+..++.|.+.+.... ..-....+.+.++|++|+||||+|+.+.+.
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3468999999999988764310 000113467899999999999999999886
No 39
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.80 E-value=7e-05 Score=63.23 Aligned_cols=119 Identities=13% Similarity=0.102 Sum_probs=66.1
Q ss_pred ccccccchHHHHHHHhhCCC---CCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHH
Q 041190 131 EVYGREKDKEVIVGLLLGDD---LNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKV 207 (261)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~ 207 (261)
.++|.+..++.+...+.... .........+.++|++|+|||++|+.+.+... ..-...+.++++...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~--~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH--SCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc--CCCcceEEeecccccccc-cHHH
Confidence 47788888888888776531 00122346899999999999999999988631 111123445554422211 1111
Q ss_pred HHHHhcCCCC--CCC-HHHHHHHHHHHhCCCeEEEEEeCCCCCChhhHHHhhcc
Q 041190 208 ILQAAAGSAD--VND-LNLLQLQLENQLKNKKFLLVLDDMWSENYDVWTNLCKP 258 (261)
Q Consensus 208 i~~~l~~~~~--~~~-~~~~~~~l~~~l~~kr~LiVlDdvw~~~~~~w~~l~~~ 258 (261)
-++.... ... ...+...+. .....+++||++....+..+..|...
T Consensus 95 ---l~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~ 142 (311)
T 4fcw_A 95 ---LIGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQM 142 (311)
T ss_dssp ---HHCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHH
T ss_pred ---hcCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHH
Confidence 1221111 111 112222222 13346999999988876666665543
No 40
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.78 E-value=3.1e-05 Score=70.61 Aligned_cols=110 Identities=19% Similarity=0.210 Sum_probs=63.4
Q ss_pred CccccccchHHHHHHHhhCCC-----------CCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCC
Q 041190 130 EEVYGREKDKEVIVGLLLGDD-----------LNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSED 198 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~-----------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~ 198 (261)
.+++|++..++.|.++|.... .++.+..+.+.|+|++|+||||+|+.+.+... + ..+.++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEeCCCc
Confidence 568999999999999987510 00112356899999999999999999998731 2 1334555554
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH--HHhCCCeEEEEEeCCCCCC
Q 041190 199 FDAVGVTKVILQAAAGSADVNDLNLLQLQLE--NQLKNKKFLLVLDDMWSEN 248 (261)
Q Consensus 199 ~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~--~~l~~kr~LiVlDdvw~~~ 248 (261)
.+.. +....+...... ........... ....+++.+|+|||+....
T Consensus 114 ~~~~-~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~ 161 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDN---MSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMS 161 (516)
T ss_dssp CCHH-HHHHTGGGGTTB---CCSTTTTTC----CCSSTTSEEEEECSGGGCC
T ss_pred chHH-HHHHHHHHHhcc---ccHHHHHhhhhhhhhccCCCeEEEEECCCccc
Confidence 4432 222222221110 00000000000 0123577899999997764
No 41
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.73 E-value=2.1e-05 Score=63.52 Aligned_cols=60 Identities=17% Similarity=0.083 Sum_probs=37.7
Q ss_pred Cccccc---cchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCC
Q 041190 130 EEVYGR---EKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSE 197 (261)
Q Consensus 130 ~~~~gr---~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 197 (261)
.+++|. ....+.+..++... ....+.|+|++|+||||||+.+.+.... ......|++++.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~~~~--~~~~~~~~~~~~ 90 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACARANE--LERRSFYIPLGI 90 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEGGG
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEEHHH
Confidence 345653 24455555555431 3467899999999999999999876322 222345666544
No 42
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.73 E-value=0.00013 Score=60.08 Aligned_cols=53 Identities=25% Similarity=0.252 Sum_probs=35.1
Q ss_pred CCCccccccchHHHHHHHhh---CCCC---CCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 128 DEEEVYGREKDKEVIVGLLL---GDDL---NSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.-.+++|.+..++.+.+++. .... -+....+-+.++|++|+||||||+.+.+.
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 33568898877777665432 2100 00112334789999999999999999886
No 43
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.70 E-value=0.00014 Score=61.57 Aligned_cols=52 Identities=25% Similarity=0.144 Sum_probs=38.1
Q ss_pred CCccccccchHHHHHHHhhCCC--C-----CCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 129 EEEVYGREKDKEVIVGLLLGDD--L-----NSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~~--~-----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|.+..++.|.+++...- . -+-...+.+.++|++|+|||+||+.+.+.
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 3468999988888888764310 0 00123467899999999999999999986
No 44
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.69 E-value=3.7e-05 Score=65.50 Aligned_cols=71 Identities=20% Similarity=0.251 Sum_probs=46.4
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccccccceeEEEee--CCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhCC
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYV--SEDFDAVGVTKVILQAAAGSADVNDLNLLQLQLENQLKN 234 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v--~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 234 (261)
-+++.|+|++|+|||+||.++.... -....|+++ ++..+. ...+.+.....+.+.+..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~-----G~~VlyIs~~~eE~v~~---------------~~~~le~~l~~i~~~l~~ 182 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL-----GGKDKYATVRFGEPLSG---------------YNTDFNVFVDDIARAMLQ 182 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH-----HTTSCCEEEEBSCSSTT---------------CBCCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC-----CCCEEEEEecchhhhhh---------------hhcCHHHHHHHHHHHHhh
Confidence 3567899999999999999998751 112345665 332111 013455555666666655
Q ss_pred CeEEEEEeCCCCCC
Q 041190 235 KKFLLVLDDMWSEN 248 (261)
Q Consensus 235 kr~LiVlDdvw~~~ 248 (261)
.+ +||+|++-...
T Consensus 183 ~~-LLVIDsI~aL~ 195 (331)
T 2vhj_A 183 HR-VIVIDSLKNVI 195 (331)
T ss_dssp CS-EEEEECCTTTC
T ss_pred CC-EEEEecccccc
Confidence 55 99999998763
No 45
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.67 E-value=0.00018 Score=62.30 Aligned_cols=53 Identities=30% Similarity=0.264 Sum_probs=38.2
Q ss_pred CCccccccchHHHHHHHhhCC----C--CCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 129 EEEVYGREKDKEVIVGLLLGD----D--LNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
-.+++|.+..++.|.+.+... . .......+-+.++|++|+|||+||+.+.+..
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 346899999999998876311 0 0011223457899999999999999999873
No 46
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.66 E-value=0.00013 Score=60.65 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=34.7
Q ss_pred CccccccchHHHHHH-------HhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVG-------LLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..++|.....+.++. .+... .......+.++|++|+|||+||+.+.+.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 457777766666555 33211 1345678899999999999999999886
No 47
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.63 E-value=9.1e-05 Score=64.24 Aligned_cols=51 Identities=24% Similarity=0.262 Sum_probs=38.0
Q ss_pred CccccccchHHHHHHHhhC----CCC--CCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLG----DDL--NSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~----~~~--~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+..++.|.+.+.. ... ......+.+.++|++|+|||+||+.+.+.
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999887742 000 00123467889999999999999999886
No 48
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.60 E-value=0.00018 Score=63.08 Aligned_cols=52 Identities=21% Similarity=0.289 Sum_probs=38.4
Q ss_pred CCccccccchHHHHHHHhhCC----CC-C-CCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 129 EEEVYGREKDKEVIVGLLLGD----DL-N-SGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~----~~-~-~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|.+..++.|.+++... .. . .....+-+.|+|++|+|||+||+.+.+.
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999998877321 00 0 0122467899999999999999999876
No 49
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.60 E-value=6.5e-05 Score=62.13 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=33.8
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..++|.......+.+.+..... ....+.|+|++|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 3578998888888877654211 2245779999999999999999876
No 50
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.59 E-value=0.00015 Score=62.27 Aligned_cols=45 Identities=20% Similarity=0.298 Sum_probs=35.7
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..++|.+..++.|...+... ++..+.++|++|+||||+|+.+.+.
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 34778888888888888653 2223889999999999999999876
No 51
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.56 E-value=0.00025 Score=60.94 Aligned_cols=45 Identities=16% Similarity=0.131 Sum_probs=34.9
Q ss_pred CccccccchHHHHHHHh-hCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLL-LGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L-~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|.+...+.+.+++ ... .... +.++|++|+||||+++.+.+.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~-----~~~~-~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR-----DLPH-LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT-----CCCC-EEEECSTTSSHHHHHHTHHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCC-----CCCe-EEEECCCCCCHHHHHHHHHHH
Confidence 45889988888888877 332 1223 899999999999999988763
No 52
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.55 E-value=0.00021 Score=63.87 Aligned_cols=52 Identities=27% Similarity=0.291 Sum_probs=38.3
Q ss_pred CCccccccchHHHHHHHhhC----CCC-C-CCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 129 EEEVYGREKDKEVIVGLLLG----DDL-N-SGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~----~~~-~-~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|.+..++.|.+.+.. ... . .....+-+.++|++|+|||+||+.+.+.
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999998887631 000 0 1123467889999999999999999986
No 53
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.54 E-value=9.7e-05 Score=65.95 Aligned_cols=76 Identities=20% Similarity=0.158 Sum_probs=45.8
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccccccc--eeEEEeeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhCC
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVKKYFS--FRACAYVSEDFDAVGVTKVILQAAAGSADVNDLNLLQLQLENQLKN 234 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~v~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 234 (261)
...+.|+|++|+||||||+.+++.. ...+. ..++++.+ .+..++...+... .. ..+...+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l--~~~~~~~~v~~v~~~------~~~~~~~~~~~~~----~~----~~~~~~~~~ 193 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV--VQNEPDLRVMYITSE------KFLNDLVDSMKEG----KL----NEFREKYRK 193 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH--HHHCCSSCEEEEEHH------HHHHHHHHHHHTT----CH----HHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHhCCCCeEEEeeHH------HHHHHHHHHHHcc----cH----HHHHHHhcC
Confidence 6689999999999999999999863 22221 12344432 2344444444311 11 123344444
Q ss_pred CeEEEEEeCCCCCC
Q 041190 235 KKFLLVLDDMWSEN 248 (261)
Q Consensus 235 kr~LiVlDdvw~~~ 248 (261)
+.-+|+|||+....
T Consensus 194 ~~~vL~IDEi~~l~ 207 (440)
T 2z4s_A 194 KVDILLIDDVQFLI 207 (440)
T ss_dssp TCSEEEEECGGGGS
T ss_pred CCCEEEEeCccccc
Confidence 66788899987654
No 54
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.53 E-value=0.00038 Score=59.27 Aligned_cols=26 Identities=42% Similarity=0.378 Sum_probs=22.7
Q ss_pred CceEEeEeecCCCChHHHHHHHhhcc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
....+.|+|++|+||||||+.+++..
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 35678999999999999999999863
No 55
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.53 E-value=0.00016 Score=60.95 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=23.2
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
+....+.++|++|+|||+||+.+.+..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345678899999999999999999874
No 56
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.00021 Score=63.57 Aligned_cols=53 Identities=17% Similarity=0.055 Sum_probs=38.0
Q ss_pred CCccccccchHHHHHHHhhCC--CC-----CCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 129 EEEVYGREKDKEVIVGLLLGD--DL-----NSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~--~~-----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
-.++.|.++.++.|.+.+.-. .. -+-+..+=+-+||++|+|||+||+.+.+..
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 356788888888887765321 00 012345678899999999999999999873
No 57
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.51 E-value=6.8e-05 Score=63.60 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=36.7
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..++|....+..+.+.+.... .....+.|+|.+|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----PSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----STTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----CCCCcEEEECCCCchHHHHHHHHHHh
Confidence 357899888888888876532 12345779999999999999999885
No 58
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.51 E-value=0.00011 Score=62.34 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=29.3
Q ss_pred chHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 137 KDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 137 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
...+.+.+++.... ......+.++|++|+|||+||+.+++..
T Consensus 135 ~~~~~~~~~i~~~~---~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 135 EAFSAILDFVEQYP---SAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHCS---CSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc---ccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34445556665421 1124678899999999999999998863
No 59
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.47 E-value=0.00017 Score=65.23 Aligned_cols=51 Identities=24% Similarity=0.167 Sum_probs=37.8
Q ss_pred CccccccchHHHHHHHhhCCCCC-------CCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLN-------SGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..++|.+..++.|.+++...-.. +.....-+.|+|++|+|||++|+.+.+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 45899999999998877531000 0123456889999999999999999876
No 60
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.46 E-value=0.00026 Score=68.38 Aligned_cols=45 Identities=22% Similarity=0.382 Sum_probs=37.6
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..++||+.++..++..|.... ...+.++|++|+|||++|+.+.+.
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999997632 234689999999999999999876
No 61
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.45 E-value=0.00073 Score=64.45 Aligned_cols=99 Identities=21% Similarity=0.206 Sum_probs=58.1
Q ss_pred CccccccchHHHHHHHhh----CCCC---CCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHH
Q 041190 130 EEVYGREKDKEVIVGLLL----GDDL---NSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAV 202 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~----~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 202 (261)
.++.|.++.+++|.+++. ..+. -+-..++-|-++|++|+|||+||+.|.+... .+| ..|+.+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg--~~~---~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT--CEE---EEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CeE---EEEEhHH-----
Confidence 457888888888887643 2110 0223456789999999999999999998732 232 2233211
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCeEEEEEeCCCCC
Q 041190 203 GVTKVILQAAAGSADVNDLNLLQLQLENQLKNKKFLLVLDDMWSE 247 (261)
Q Consensus 203 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~ 247 (261)
+...........+...+.......+.+|+||++...
T Consensus 274 ---------l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal 309 (806)
T 3cf2_A 274 ---------IMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI 309 (806)
T ss_dssp ---------HHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGT
T ss_pred ---------hhcccchHHHHHHHHHHHHHHHcCCeEEEEehhccc
Confidence 010111111222222233344567899999999765
No 62
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.43 E-value=0.00057 Score=52.08 Aligned_cols=22 Identities=50% Similarity=0.786 Sum_probs=19.7
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+|.|.|++|+||||+|+.+ ..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47899999999999999999 44
No 63
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.00022 Score=62.53 Aligned_cols=51 Identities=24% Similarity=0.113 Sum_probs=36.7
Q ss_pred CccccccchHHHHHHHhhCC--CC-----CCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGD--DL-----NSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~--~~-----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++.|.++.+++|.+.+.-. .. -+-+..+=+-++|++|+|||.||+.+.+.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 45788888888887754321 00 01233456789999999999999999987
No 64
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.0003 Score=62.34 Aligned_cols=52 Identities=23% Similarity=0.112 Sum_probs=37.6
Q ss_pred CCccccccchHHHHHHHhhCC--CC-----CCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 129 EEEVYGREKDKEVIVGLLLGD--DL-----NSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~--~~-----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.++.|.+..++.|.+.+... .. -+-+..+=+-++|++|+|||+||+.+.+.
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 356888988888887765321 00 01233456889999999999999999987
No 65
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.37 E-value=0.00022 Score=53.93 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=22.3
Q ss_pred ceEEeEeecCCCChHHHHHHHhhcc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
-..+.|+|++|+|||||++.+++..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998864
No 66
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.35 E-value=0.00017 Score=64.58 Aligned_cols=51 Identities=20% Similarity=0.175 Sum_probs=35.8
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
..++|.+..++.+..++..-.. +....+-+.++|++|+|||+||+.+.+..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKS-KKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHT-TCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHh-CCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 5689998887765554322110 12233567889999999999999999873
No 67
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.35 E-value=0.001 Score=63.28 Aligned_cols=45 Identities=27% Similarity=0.332 Sum_probs=37.8
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..++|++.++..+++.|... ...-+.++|++|+|||++|+.+.+.
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 35899999999999999753 2345689999999999999999875
No 68
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.33 E-value=0.0016 Score=56.00 Aligned_cols=92 Identities=13% Similarity=0.024 Sum_probs=57.2
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhcccccc----ccceeEEEeeCCCCCHHHHHHHHHHHhcCC-------------CC
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFNDAGVKK----YFSFRACAYVSEDFDAVGVTKVILQAAAGS-------------AD 217 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~-------------~~ 217 (261)
+.-.++.|+|.+|+|||||+..+........ .-...+|+.....++...+.. ++..++.. .+
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCC
Confidence 4557999999999999999999876522211 123567888888777665543 34444311 11
Q ss_pred CCCHHHHHHHHHHHhC---CCeEEEEEeCCCCC
Q 041190 218 VNDLNLLQLQLENQLK---NKKFLLVLDDMWSE 247 (261)
Q Consensus 218 ~~~~~~~~~~l~~~l~---~kr~LiVlDdvw~~ 247 (261)
.....++...+...+. .+--+||+|.+-..
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l 231 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMAL 231 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHHH
Confidence 2222234444555553 56779999998654
No 69
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.00032 Score=62.27 Aligned_cols=51 Identities=25% Similarity=0.182 Sum_probs=37.4
Q ss_pred CccccccchHHHHHHHhhC----CCC---CCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLG----DDL---NSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++.|.++.++.|.+.+.. .+. -+-+..+=+-+||++|+|||.||+.+.+.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 5688888888888775322 100 02234567889999999999999999987
No 70
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.28 E-value=0.0004 Score=66.19 Aligned_cols=45 Identities=24% Similarity=0.363 Sum_probs=37.8
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..++|++..++.++..|.... ..-+.++|++|+|||++|+.+.+.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999997632 234679999999999999999876
No 71
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.26 E-value=0.00065 Score=61.12 Aligned_cols=53 Identities=26% Similarity=0.136 Sum_probs=35.6
Q ss_pred CCccccccchHHHHHHHhhCCCC------CCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 129 EEEVYGREKDKEVIVGLLLGDDL------NSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
-.+++|.++.++++.+++..-.. -+....+-+.++|++|+|||+||+.+.+..
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34689988877777665432100 011122347899999999999999999863
No 72
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00035 Score=62.28 Aligned_cols=51 Identities=24% Similarity=0.108 Sum_probs=37.2
Q ss_pred CccccccchHHHHHHHhhC----CCC---CCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLG----DDL---NSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++.|.++.++.|.+.+.- .+. -+-...+=|-++|++|+|||+||+.+.+.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 4688888888888875422 100 01234566889999999999999999987
No 73
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.22 E-value=0.0012 Score=57.07 Aligned_cols=100 Identities=17% Similarity=0.050 Sum_probs=62.3
Q ss_pred HHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCC---
Q 041190 139 KEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGS--- 215 (261)
Q Consensus 139 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~--- 215 (261)
...|-..|... +-+.-.++.|+|++|+|||||+.++...... .=..++|+.....++.. .+++++..
T Consensus 46 ~~~LD~~Lg~G---Gi~~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~~~~-----ra~rlgv~~~~ 115 (356)
T 3hr8_A 46 SLAIDIATGVG---GYPRGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHALDPV-----YAKNLGVDLKS 115 (356)
T ss_dssp CHHHHHHTSSS---SEETTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHHTCCGGG
T ss_pred CHHHHHHhccC---CccCCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEecccccchH-----HHHHcCCchhh
Confidence 34555555411 2234579999999999999999999876321 11235688777666543 34555511
Q ss_pred ---CCCCCHHHHHHHHHHHhC-CCeEEEEEeCCCCCC
Q 041190 216 ---ADVNDLNLLQLQLENQLK-NKKFLLVLDDMWSEN 248 (261)
Q Consensus 216 ---~~~~~~~~~~~~l~~~l~-~kr~LiVlDdvw~~~ 248 (261)
....+.+++...+...++ .+.-++|+|.+-..-
T Consensus 116 l~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 116 LLISQPDHGEQALEIVDELVRSGVVDLIVVDSVAALV 152 (356)
T ss_dssp CEEECCSSHHHHHHHHHHHHHTSCCSEEEEECTTTCC
T ss_pred hhhhhccCHHHHHHHHHHHhhhcCCCeEEehHhhhhc
Confidence 123455666666665553 556689999986653
No 74
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.17 E-value=0.0018 Score=54.88 Aligned_cols=100 Identities=9% Similarity=-0.068 Sum_probs=56.3
Q ss_pred cccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccc-cc-cccceeEEEeeCC-CCCHHHHHHHHHH
Q 041190 134 GREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAG-VK-KYFSFRACAYVSE-DFDAVGVTKVILQ 210 (261)
Q Consensus 134 gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~-~~f~~~~wv~v~~-~~~~~~i~~~i~~ 210 (261)
|.++.++.|...+... +.+..-++|++|+||||+|+.+.+... .. .+.+. .+++.++ ...... .+++++
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~-ir~li~ 72 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDD-IRTIKD 72 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHH-HHHHHH
Confidence 3445566777777542 257888999999999999999976411 11 12232 4455443 333333 344555
Q ss_pred HhcCCCCCCCHHHHHHHHHHHhCCCeEEEEEeCCCCCChhhHHHhh
Q 041190 211 AAAGSADVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVWTNLC 256 (261)
Q Consensus 211 ~l~~~~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~~~~~w~~l~ 256 (261)
.+...+ ..+++-++|+|++...+.+..+.|.
T Consensus 73 ~~~~~p---------------~~~~~kvviIdead~lt~~a~naLL 103 (305)
T 2gno_A 73 FLNYSP---------------ELYTRKYVIVHDCERMTQQAANAFL 103 (305)
T ss_dssp HHTSCC---------------SSSSSEEEEETTGGGBCHHHHHHTH
T ss_pred HHhhcc---------------ccCCceEEEeccHHHhCHHHHHHHH
Confidence 554111 1245566777777766655555443
No 75
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.15 E-value=0.00027 Score=67.39 Aligned_cols=109 Identities=16% Similarity=0.124 Sum_probs=62.8
Q ss_pred CccccccchHHHHHHHhhCCCC---CCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHH
Q 041190 130 EEVYGREKDKEVIVGLLLGDDL---NSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTK 206 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~ 206 (261)
..++|.+..++.+...+..... +.......+.++|++|+|||++|+.+.+.. ...-...+.++++.-.....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l--~~~~~~~i~i~~s~~~~~~~--- 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI--FGDEESMIRIDMSEYMEKHS--- 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH--HSCTTCEEEEEGGGGCSSCC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCcceEEEechhcccccc---
Confidence 4588999988888887765321 012334478999999999999999998763 11111233445444221100
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHhCCCeEEEEEeCCCCCChhhHHHhhcc
Q 041190 207 VILQAAAGSADVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVWTNLCKP 258 (261)
Q Consensus 207 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~~~~~w~~l~~~ 258 (261)
.....+...++. ....+|+||++....++.+..|...
T Consensus 566 ------------~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~ 602 (758)
T 3pxi_A 566 ------------TSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQV 602 (758)
T ss_dssp ------------CC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHH
T ss_pred ------------cccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHH
Confidence 000111111111 2344899999988876666665443
No 76
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.15 E-value=0.00027 Score=63.55 Aligned_cols=45 Identities=24% Similarity=0.363 Sum_probs=37.5
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..++|++.+++.++..|.... ..-+.++|++|+|||++|+.+.+.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999997632 234579999999999999999876
No 77
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.12 E-value=0.0019 Score=55.02 Aligned_cols=91 Identities=14% Similarity=0.081 Sum_probs=57.3
Q ss_pred CceEEeEeecCCCChHHHHHHHhhccccccc----cceeEEEeeCCCCCHHHHHHHHHHHhcCC----------CCCCCH
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDAGVKKY----FSFRACAYVSEDFDAVGVTKVILQAAAGS----------ADVNDL 221 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~i~~~i~~~l~~~----------~~~~~~ 221 (261)
.-.++.|+|.+|+|||||+.++......... -...+|++....++...+.. ++..++.. ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 4568999999999999999998765222111 13567888888776666543 34444411 012222
Q ss_pred H---HHHHHHHHHhC--CCeEEEEEeCCCCC
Q 041190 222 N---LLQLQLENQLK--NKKFLLVLDDMWSE 247 (261)
Q Consensus 222 ~---~~~~~l~~~l~--~kr~LiVlDdvw~~ 247 (261)
+ ++...+...++ .+--+||+|.+-..
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 2 34445555553 56789999998653
No 78
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.12 E-value=0.0011 Score=63.67 Aligned_cols=53 Identities=26% Similarity=0.183 Sum_probs=39.0
Q ss_pred CCCccccccchHHHHHHHhhC----CCC---CCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 128 DEEEVYGREKDKEVIVGLLLG----DDL---NSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.-.+++|.+..++.|.+++.. .+. -.-.....+.++|++|+||||||+.+.+.
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 345689999999998887753 000 01123456899999999999999999876
No 79
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.12 E-value=0.0012 Score=53.32 Aligned_cols=91 Identities=13% Similarity=0.030 Sum_probs=53.8
Q ss_pred CceEEeEeecCCCChHHHHHHHhhcccccc----ccceeEEEeeCCCCCHHHHHHHHHHHhcCCC----------CCCCH
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDAGVKK----YFSFRACAYVSEDFDAVGVTKVILQAAAGSA----------DVNDL 221 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~~----------~~~~~ 221 (261)
.-.++.|+|++|+|||||++.+........ .-...+|+.....+....+. .++..++... ...+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 346999999999999999999887421111 12346777766654544432 3344443110 11222
Q ss_pred HH---HHHHHHHHhC-CCeEEEEEeCCCCC
Q 041190 222 NL---LQLQLENQLK-NKKFLLVLDDMWSE 247 (261)
Q Consensus 222 ~~---~~~~l~~~l~-~kr~LiVlDdvw~~ 247 (261)
.+ +...+.+.+. .+.-+||||++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 22 2333545553 56789999998764
No 80
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.0007 Score=59.78 Aligned_cols=51 Identities=25% Similarity=0.183 Sum_probs=37.2
Q ss_pred CccccccchHHHHHHHhhC----CCC---CCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLG----DDL---NSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++-|.++.++.|.+.+.- .+. -+-+..+=|-++|++|+|||.||+.+.+.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH
Confidence 4678888888888775432 100 02234567899999999999999999987
No 81
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.05 E-value=0.0023 Score=55.64 Aligned_cols=99 Identities=19% Similarity=0.045 Sum_probs=61.8
Q ss_pred HHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCC---
Q 041190 139 KEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGS--- 215 (261)
Q Consensus 139 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~--- 215 (261)
...|-.+|... +-+.-.++.|+|.+|+||||||.++..... ..-...+|+.....++.. ....++..
T Consensus 59 ~~~LD~~Lg~G---Gl~~G~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~ 128 (366)
T 1xp8_A 59 SLSLDLALGVG---GIPRGRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALDPV-----YARALGVNTDE 128 (366)
T ss_dssp CHHHHHHTSSS---SEETTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGG
T ss_pred CHHHHHHhCCC---CccCCcEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCChhHH-----HHHHcCCCHHH
Confidence 44555555411 123446889999999999999988876521 122357888888766643 23444411
Q ss_pred ---CCCCCHHHHHHHHHHHhC-CCeEEEEEeCCCCC
Q 041190 216 ---ADVNDLNLLQLQLENQLK-NKKFLLVLDDMWSE 247 (261)
Q Consensus 216 ---~~~~~~~~~~~~l~~~l~-~kr~LiVlDdvw~~ 247 (261)
..+.+.+++...+....+ ++--+||+|.+-..
T Consensus 129 l~i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 129 LLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp CEEECCSSHHHHHHHHHHHHTTTCCSEEEEECTTTC
T ss_pred ceeecCCcHHHHHHHHHHHHhcCCCCEEEEeChHHh
Confidence 123456666666666654 44569999998765
No 82
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.05 E-value=0.0007 Score=53.55 Aligned_cols=43 Identities=26% Similarity=0.306 Sum_probs=32.3
Q ss_pred ccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 135 REKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 135 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
|+...+.|.+.+.... .....+++|.|++|+||||+++.+...
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3445677777776532 234679999999999999999998764
No 83
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.99 E-value=0.002 Score=54.81 Aligned_cols=91 Identities=19% Similarity=0.192 Sum_probs=57.2
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhcccccc---------cc-----ceeEEEeeCCCCCHHHHHHHHHHHhcCC-----
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFNDAGVKK---------YF-----SFRACAYVSEDFDAVGVTKVILQAAAGS----- 215 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~v~~~~~~~~i~~~i~~~l~~~----- 215 (261)
+.-.++.|+|.+|+|||+||.++........ .. ...+|+.....++...+.. ++..++..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~ 174 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVL 174 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHh
Confidence 3457999999999999999998876521111 11 3567888888777666553 34445411
Q ss_pred -----CCCCCHH---HHHHHHHHHhC--CCeEEEEEeCCCC
Q 041190 216 -----ADVNDLN---LLQLQLENQLK--NKKFLLVLDDMWS 246 (261)
Q Consensus 216 -----~~~~~~~---~~~~~l~~~l~--~kr~LiVlDdvw~ 246 (261)
....+.+ ++...+...+. .+--+||+|.+-.
T Consensus 175 ~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 175 DNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp HTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred cCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 1122323 34445555554 4667999999864
No 84
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.94 E-value=0.0008 Score=64.98 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=63.6
Q ss_pred ccccccchHHHHHHHhhCCC---CCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHH
Q 041190 131 EVYGREKDKEVIVGLLLGDD---LNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKV 207 (261)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~ 207 (261)
.++|.+..++.+...+.... .+.+.....+.++|++|+|||++|+.+.+... ..-...+.++++....... ...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~--~~~~~~i~i~~~~~~~~~~-~s~ 635 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEYMEKHA-VSR 635 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH--SSGGGEEEECTTTCCSSGG-GGG
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCCcEEEEechhccchhH-HHH
Confidence 57899888888888775421 10123346889999999999999999987621 1111223455444222100 000
Q ss_pred HHHHhcCCC--CCCC-HHHHHHHHHHHhCCCeEEEEEeCCCCCChhhHHHhhccc
Q 041190 208 ILQAAAGSA--DVND-LNLLQLQLENQLKNKKFLLVLDDMWSENYDVWTNLCKPF 259 (261)
Q Consensus 208 i~~~l~~~~--~~~~-~~~~~~~l~~~l~~kr~LiVlDdvw~~~~~~w~~l~~~l 259 (261)
+ ++... ...+ ...+...++. ...-+|+||++....++.++.|...|
T Consensus 636 l---~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l 684 (854)
T 1qvr_A 636 L---IGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQIL 684 (854)
T ss_dssp C-----------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHH
T ss_pred H---cCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHh
Confidence 0 11000 0000 0112222222 23468999999888776666655443
No 85
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.93 E-value=0.0016 Score=56.59 Aligned_cols=50 Identities=28% Similarity=0.231 Sum_probs=35.0
Q ss_pred ccccccchHHHHHHHhh----CCC--------------------CCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 131 EVYGREKDKEVIVGLLL----GDD--------------------LNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 131 ~~~gr~~~~~~l~~~L~----~~~--------------------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++|.+..++.|...+. ... .........+.++|++|+|||++|+.+.+.
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 57888888888877662 000 000112346889999999999999999886
No 86
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.92 E-value=0.00083 Score=55.37 Aligned_cols=53 Identities=26% Similarity=0.234 Sum_probs=36.5
Q ss_pred CCccccccchHHHHHHHhhCCCCC------CCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 129 EEEVYGREKDKEVIVGLLLGDDLN------SGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
-.+++|.+..++.+.+++..-... +....+-+.++|++|+|||+||+.+.+..
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 356899988888888765420000 00112337799999999999999998863
No 87
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.92 E-value=0.00027 Score=60.65 Aligned_cols=51 Identities=29% Similarity=0.444 Sum_probs=35.9
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
..++|.+..++.+...+..... .+..+..+.++|++|+||||||+.+.+..
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3577877777776666543100 12234678999999999999999998863
No 88
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.92 E-value=0.0049 Score=52.71 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=29.5
Q ss_pred cchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 136 EKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 136 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+...+.+...+..+ .-.+.+-++|++|+|||++|+.+.+.
T Consensus 8 ~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp HHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHH
Confidence 34456666666543 23457899999999999999988765
No 89
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.91 E-value=0.0035 Score=54.10 Aligned_cols=100 Identities=16% Similarity=0.011 Sum_probs=60.9
Q ss_pred HHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCC---
Q 041190 139 KEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGS--- 215 (261)
Q Consensus 139 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~--- 215 (261)
...|-.+|... +-+.-.++.|+|++|+|||||+.++..... ..=...+|++....++.. ....++..
T Consensus 46 ~~~LD~~Lg~G---Gl~~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~ 115 (349)
T 2zr9_A 46 SISLDVALGIG---GLPRGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPE-----YAKKLGVDTDS 115 (349)
T ss_dssp CHHHHHHTSSS---SEETTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGG
T ss_pred CHHHHHHhccC---CccCCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHH-----HHHHcCCCHHH
Confidence 34455555411 123456899999999999999999876522 112346788887766543 23444411
Q ss_pred ---CCCCCHHHHHHHHHHHhC-CCeEEEEEeCCCCCC
Q 041190 216 ---ADVNDLNLLQLQLENQLK-NKKFLLVLDDMWSEN 248 (261)
Q Consensus 216 ---~~~~~~~~~~~~l~~~l~-~kr~LiVlDdvw~~~ 248 (261)
..+.+.+++...++...+ .+.-+||+|.+-...
T Consensus 116 l~i~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 116 LLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp CEEECCSSHHHHHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred eEEecCCCHHHHHHHHHHHHhcCCCCEEEEcChHhhc
Confidence 123345555555555543 456799999987653
No 90
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.91 E-value=0.0047 Score=49.25 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.3
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.++.|+|++|+|||||++.+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999854
No 91
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.91 E-value=0.0014 Score=53.67 Aligned_cols=52 Identities=27% Similarity=0.297 Sum_probs=33.3
Q ss_pred CCccccccchHHHHHHHhhCCC-------CCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 129 EEEVYGREKDKEVIVGLLLGDD-------LNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 129 ~~~~~gr~~~~~~l~~~L~~~~-------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
-.+++|.+..+..+.++...-. ..-..... +.|+|++|+|||||++.+.+..
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHHh
Confidence 3467887766666655432210 00011122 8999999999999999999863
No 92
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.90 E-value=0.0017 Score=54.12 Aligned_cols=50 Identities=26% Similarity=0.282 Sum_probs=32.5
Q ss_pred CccccccchHHHHHHHhhCC--------CCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGD--------DLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++.|.+..++.|.+.+... ...-..... +.++|++|+|||||++.+...
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH
Confidence 45777777777777643210 000011123 899999999999999999886
No 93
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.88 E-value=0.001 Score=52.85 Aligned_cols=38 Identities=24% Similarity=0.355 Sum_probs=28.0
Q ss_pred HHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 139 KEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 139 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+.|.+.+... .+...+++|+|++|+|||||++.+..-
T Consensus 8 ~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 8 CQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34455555432 235679999999999999999998765
No 94
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.87 E-value=0.0051 Score=55.63 Aligned_cols=54 Identities=26% Similarity=0.251 Sum_probs=35.5
Q ss_pred CCCccccccchHHHHHHHhhC---CCC--C-CCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 128 DEEEVYGREKDKEVIVGLLLG---DDL--N-SGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~---~~~--~-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.-.+++|.+..+.++.++... ... + +..-.+-+.|+|++|+||||||+.+....
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345688988777776665432 100 0 01112238999999999999999999863
No 95
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.83 E-value=0.0029 Score=54.61 Aligned_cols=92 Identities=22% Similarity=0.163 Sum_probs=53.0
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhcccccccc----ceeEEEeeCCCCCHHHHHHHHHHHhcC-------------CCC
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYF----SFRACAYVSEDFDAVGVTKVILQAAAG-------------SAD 217 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~wv~v~~~~~~~~i~~~i~~~l~~-------------~~~ 217 (261)
+.-.++.|+|++|+|||||++.+.......... ...+|+...+.+....+ ..+.+..+. ...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 345799999999999999999998753111111 13478876655433332 223332220 001
Q ss_pred CCCHHHHHHHHHHHhC------CCeEEEEEeCCCCC
Q 041190 218 VNDLNLLQLQLENQLK------NKKFLLVLDDMWSE 247 (261)
Q Consensus 218 ~~~~~~~~~~l~~~l~------~kr~LiVlDdvw~~ 247 (261)
.....++...+...+. .+.-|||||.+-..
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 1112233444555553 46789999999765
No 96
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.81 E-value=0.0016 Score=59.66 Aligned_cols=50 Identities=32% Similarity=0.362 Sum_probs=34.1
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 131 EVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+++|.+.-+..+.+.+.-..........++.++|++|+||||||+.+...
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46777776666655433211001124568999999999999999999886
No 97
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.81 E-value=0.0046 Score=52.04 Aligned_cols=25 Identities=28% Similarity=0.169 Sum_probs=21.6
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+..++.++|++|+||||++..+...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999988654
No 98
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.80 E-value=0.0064 Score=51.62 Aligned_cols=84 Identities=10% Similarity=0.045 Sum_probs=53.8
Q ss_pred EEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCCC------CCCCHHHH-HHHHHHH
Q 041190 159 VIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGSA------DVNDLNLL-QLQLENQ 231 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~~------~~~~~~~~-~~~l~~~ 231 (261)
++-|+|++|+|||||+-++.........=...+|+...+.++.. .+++++-.. .+.+.+++ ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999998877652211012346788888777653 256666211 23445555 3333222
Q ss_pred --h-CCCeEEEEEeCCCCC
Q 041190 232 --L-KNKKFLLVLDDMWSE 247 (261)
Q Consensus 232 --l-~~kr~LiVlDdvw~~ 247 (261)
+ .++.-|||+|.|-..
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 3 467899999999776
No 99
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.79 E-value=0.00088 Score=52.16 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=22.1
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.-.++.|+|++|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999775
No 100
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.79 E-value=0.00071 Score=51.59 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.5
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+|.|.|++|+||||+++.+.+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998764
No 101
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.79 E-value=0.00079 Score=56.48 Aligned_cols=52 Identities=21% Similarity=0.257 Sum_probs=37.5
Q ss_pred CccccccchHHHHHHHhhCC--CC--C----CCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 130 EEVYGREKDKEVIVGLLLGD--DL--N----SGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~--~~--~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
..++|.+..++.+...+... .. . .......+.++|++|+|||++|+.+.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999998888877540 00 0 01123567899999999999999998863
No 102
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.75 E-value=0.002 Score=53.53 Aligned_cols=53 Identities=26% Similarity=0.291 Sum_probs=34.5
Q ss_pred CCCccccccchHHHHHHHhhCCC-------CCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 128 DEEEVYGREKDKEVIVGLLLGDD-------LNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~-------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.-.+++|.+..+..+.++...-. ..-..... +.|+|++|+|||||++.+....
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHHT
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHHc
Confidence 34568888777666665443210 00001122 8899999999999999999863
No 103
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.73 E-value=0.019 Score=50.99 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=29.0
Q ss_pred HHHHHHHhhCCCCC---CCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 139 KEVIVGLLLGDDLN---SGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 139 ~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++|.++|...... .....++|.++|.+|+||||++..+...
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45666666542210 1235789999999999999998887644
No 104
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.73 E-value=0.00082 Score=51.71 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=21.0
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+|.|+|++|+||||+++.+.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999875
No 105
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.71 E-value=0.00051 Score=55.49 Aligned_cols=93 Identities=13% Similarity=-0.060 Sum_probs=49.3
Q ss_pred ceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHhC
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGS---ADVNDLNLLQLQLENQLK 233 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~---~~~~~~~~~~~~l~~~l~ 233 (261)
-.++.|+|..|+||||++..+......+ ... ...+....+. . -...+..+++.. .......++...+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~-g~k-Vli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYA-DVK-YLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT-TCC-EEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhc-CCE-EEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 4689999999999999887776653221 121 2223222211 1 111223333311 112234455566666555
Q ss_pred CCeE-EEEEeCCCCCChhhHHH
Q 041190 234 NKKF-LLVLDDMWSENYDVWTN 254 (261)
Q Consensus 234 ~kr~-LiVlDdvw~~~~~~w~~ 254 (261)
+.++ +|++|++.....+..+.
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~ 108 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEV 108 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHH
T ss_pred CCCCCEEEEecCccCcHHHHHH
Confidence 5545 99999997665443333
No 106
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.71 E-value=0.0018 Score=54.31 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=28.6
Q ss_pred HHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 139 KEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 139 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++++.-+..... ......+|.|.|++|+||||+++.+...
T Consensus 16 ~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 16 LNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444444443322 3345678999999999999999999765
No 107
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.71 E-value=0.00086 Score=52.04 Aligned_cols=23 Identities=13% Similarity=0.434 Sum_probs=21.1
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++.|+|++|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999865
No 108
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.70 E-value=0.00097 Score=51.22 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.4
Q ss_pred eEEeEeecCCCChHHHHHHHhh
Q 041190 158 SVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 109
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.70 E-value=0.00091 Score=52.72 Aligned_cols=24 Identities=38% Similarity=0.426 Sum_probs=21.5
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+|.|+|++|+||||+++.+...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999765
No 110
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.66 E-value=0.0012 Score=51.99 Aligned_cols=26 Identities=38% Similarity=0.359 Sum_probs=22.7
Q ss_pred CceEEeEeecCCCChHHHHHHHhhcc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
...+|.|+|++|+|||||++.+....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999997753
No 111
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.64 E-value=0.00087 Score=51.30 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.8
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+|.|+|++|+|||||++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999775
No 112
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.63 E-value=0.0012 Score=52.25 Aligned_cols=25 Identities=44% Similarity=0.343 Sum_probs=22.2
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...+++|+|+.|+|||||++.+..-
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999764
No 113
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.62 E-value=0.0058 Score=48.59 Aligned_cols=75 Identities=15% Similarity=0.202 Sum_probs=43.1
Q ss_pred EEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHH----------hcCCCCCCCHHHHHHHH
Q 041190 159 VIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQA----------AAGSADVNDLNLLQLQL 228 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~----------l~~~~~~~~~~~~~~~l 228 (261)
+|.+.|++|+||||+|+.+.+...+ ..+ +..+++++-+.. ....-..-+.+-+...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~-------~~i------stGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv 68 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF-------VHI------STGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALI 68 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC-------EEE------EHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC-------eEE------cHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHH
Confidence 6789999999999999999876322 112 234444432221 11011122233445667
Q ss_pred HHHhCCCeEEEEEeCCCCC
Q 041190 229 ENQLKNKKFLLVLDDMWSE 247 (261)
Q Consensus 229 ~~~l~~kr~LiVlDdvw~~ 247 (261)
.+.+..... +|||+.-..
T Consensus 69 ~~~l~~~~~-~ilDGfPRt 86 (206)
T 3sr0_A 69 EEVFPKHGN-VIFDGFPRT 86 (206)
T ss_dssp HHHCCSSSC-EEEESCCCS
T ss_pred HHhhccCCc-eEecCCchh
Confidence 777765544 578887544
No 114
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.62 E-value=0.0057 Score=52.89 Aligned_cols=100 Identities=15% Similarity=0.007 Sum_probs=59.3
Q ss_pred HHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCC---
Q 041190 139 KEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGS--- 215 (261)
Q Consensus 139 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~--- 215 (261)
...|-.+|... +-+.-.++.|+|.+|+||||||.++..... ..-...+|+.....++... ...++..
T Consensus 48 ~~~LD~~Lg~G---Gl~~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~ 117 (356)
T 1u94_A 48 SLSLDIALGAG---GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDN 117 (356)
T ss_dssp CHHHHHHTSSS---SEETTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGG
T ss_pred CHHHHHHhccC---CccCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHH-----HHHcCCChhh
Confidence 44555555311 123456899999999999999998876522 1112477888877666431 3444411
Q ss_pred ---CCCCCHHHHHHHHHHHh-CCCeEEEEEeCCCCCC
Q 041190 216 ---ADVNDLNLLQLQLENQL-KNKKFLLVLDDMWSEN 248 (261)
Q Consensus 216 ---~~~~~~~~~~~~l~~~l-~~kr~LiVlDdvw~~~ 248 (261)
..+.+.+++...++... ..+--+||+|.+-...
T Consensus 118 l~i~~~~~~e~~~~~~~~l~~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 118 LLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 154 (356)
T ss_dssp CEEECCSSHHHHHHHHHHHHHHTCCSEEEEECGGGCC
T ss_pred eeeeCCCCHHHHHHHHHHHHhccCCCEEEEcCHHHhc
Confidence 12234455555454443 2455699999986653
No 115
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.62 E-value=0.0014 Score=55.04 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=23.3
Q ss_pred CCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 154 GPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 154 ~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+..+|+|+|.+|+|||||++.+...
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999999988765
No 116
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.58 E-value=0.0019 Score=55.88 Aligned_cols=50 Identities=32% Similarity=0.322 Sum_probs=36.1
Q ss_pred ccccccchHHHHHHHhhCC-------C--CCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 131 EVYGREKDKEVIVGLLLGD-------D--LNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~~-------~--~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++|.+..++.|...+... . .........+.++|++|+|||++|+.+.+.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3689888888888877210 0 001123456889999999999999999886
No 117
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.58 E-value=0.0013 Score=51.75 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.9
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 58999999999999999999764
No 118
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.58 E-value=0.0015 Score=50.81 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=22.0
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...+|.|.|++|+||||+++.+.+.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999765
No 119
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.56 E-value=0.0012 Score=52.04 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.6
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+|.|.|++|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999765
No 120
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.56 E-value=0.0064 Score=57.80 Aligned_cols=118 Identities=16% Similarity=0.131 Sum_probs=63.5
Q ss_pred CccccccchHHHHHHHhhCCCC---CCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHH
Q 041190 130 EEVYGREKDKEVIVGLLLGDDL---NSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTK 206 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~ 206 (261)
..++|.+..++.+...+..... +.+.....+.++|++|+|||++|+.+.+.. .. ..+.++++.......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l--~~---~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--GI---ELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH--TC---EEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh--cC---CEEEEechhhcchhh---
Confidence 4578888888888776654210 112345578999999999999999998863 11 123344433211100
Q ss_pred HHHHHhcCCCCCCCHH-HHHHHHHHHh-CCCeEEEEEeCCCCCChhhHHHhhcc
Q 041190 207 VILQAAAGSADVNDLN-LLQLQLENQL-KNKKFLLVLDDMWSENYDVWTNLCKP 258 (261)
Q Consensus 207 ~i~~~l~~~~~~~~~~-~~~~~l~~~l-~~kr~LiVlDdvw~~~~~~w~~l~~~ 258 (261)
+..-++.. +.... .....+.+.+ +....+|+||++....++.++.|...
T Consensus 530 -~~~l~g~~--~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~ 580 (758)
T 1r6b_X 530 -VSRLIGAP--PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQV 580 (758)
T ss_dssp -CSSSCCCC--SCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHH
T ss_pred -HhhhcCCC--CCCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHH
Confidence 00001100 11111 0001112222 23467999999988877666665443
No 121
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.55 E-value=0.0022 Score=52.57 Aligned_cols=42 Identities=21% Similarity=0.179 Sum_probs=29.7
Q ss_pred hHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 138 DKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 138 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+.+...+..... ......+|.++|++|+||||+|+.+...
T Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 14 ALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34444444444322 3445679999999999999999999765
No 122
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.55 E-value=0.0014 Score=50.77 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=21.0
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+|.|.|++|+||||+++.+.+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999875
No 123
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.54 E-value=0.0018 Score=49.69 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.9
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...++.|+|++|+||||+++.+...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3568999999999999999998764
No 124
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.54 E-value=0.0013 Score=50.60 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=20.5
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|++|+|||||++.++..
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~~ 32 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFKP 32 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSCG
T ss_pred CEEEEEECCCCCCHHHHHHHHccC
Confidence 468999999999999999976543
No 125
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.53 E-value=0.0014 Score=51.69 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=22.1
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...++.|+|++|+|||||++.+...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999765
No 126
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.52 E-value=0.0034 Score=54.75 Aligned_cols=96 Identities=15% Similarity=0.052 Sum_probs=52.1
Q ss_pred HHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccc-cccceeEEEeeCCCCCHHHHHHHHHHHhc-----C
Q 041190 141 VIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVK-KYFSFRACAYVSEDFDAVGVTKVILQAAA-----G 214 (261)
Q Consensus 141 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~v~~~~~~~~i~~~i~~~l~-----~ 214 (261)
.+++.+..- .+-..++|+|.+|+|||||++.+.+..... ..+.| +++-+.+..... .++.+.+. .
T Consensus 163 raID~~~pi-----~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~~Ev---~~~~~~~~~~vV~a 233 (422)
T 3ice_A 163 RVLDLASPI-----GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERPEEV---TEMQRLVKGEVVAS 233 (422)
T ss_dssp HHHHHHSCC-----BTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCHHHH---HHHHTTCSSEEEEE
T ss_pred eeeeeeeee-----cCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCChHHH---HHHHHHhCeEEEEe
Confidence 345555442 234578999999999999999987652111 12323 356666643221 12223321 1
Q ss_pred CCCCCCHHH---------HHHHHHHHhCCCeEEEEEeCCCCC
Q 041190 215 SADVNDLNL---------LQLQLENQLKNKKFLLVLDDMWSE 247 (261)
Q Consensus 215 ~~~~~~~~~---------~~~~l~~~l~~kr~LiVlDdvw~~ 247 (261)
..+...... ....+++ .++.+||++||+-.-
T Consensus 234 tadep~~~r~~~a~~alt~AEyfrd--~G~dVLil~DslTR~ 273 (422)
T 3ice_A 234 TFDEPASRHVQVAEMVIEKAKRLVE--HKKDVIILLDSITRL 273 (422)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHH--TSCEEEEEEECHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh--cCCCEEEEEeCchHH
Confidence 112111111 1222332 589999999998543
No 127
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.52 E-value=0.0024 Score=57.77 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=36.1
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
..++|.+..++.+...+... .-+.++|++|+|||+||+.+.+..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHHH
Confidence 34789888888888777653 368899999999999999998863
No 128
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.52 E-value=0.0014 Score=51.01 Aligned_cols=23 Identities=43% Similarity=0.559 Sum_probs=20.4
Q ss_pred EEeEeecCCCChHHHHHHHhhcc
Q 041190 159 VIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.++|+|++|+|||||++.+....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998654
No 129
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.51 E-value=0.0068 Score=53.27 Aligned_cols=104 Identities=16% Similarity=0.066 Sum_probs=57.1
Q ss_pred HHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcccccc----ccceeEEEeeCCCCCHHHHHHHHHHHhcC
Q 041190 139 KEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKK----YFSFRACAYVSEDFDAVGVTKVILQAAAG 214 (261)
Q Consensus 139 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~i~~~i~~~l~~ 214 (261)
...|-.+|.. +-+.-.++.|+|++|+|||||+..++-...... .-...+|+.....+....+. .+.+.++-
T Consensus 164 ~~~LD~lLgG----GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl 238 (400)
T 3lda_A 164 SKNLDTLLGG----GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGL 238 (400)
T ss_dssp CHHHHHHTTT----SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred ChhHHHHhcC----CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCC
Confidence 3445555532 223456999999999999999997753211111 12346788776665555433 34454441
Q ss_pred C----------CCCCCHH---HHHHHHHHHh-CCCeEEEEEeCCCCC
Q 041190 215 S----------ADVNDLN---LLQLQLENQL-KNKKFLLVLDDMWSE 247 (261)
Q Consensus 215 ~----------~~~~~~~---~~~~~l~~~l-~~kr~LiVlDdvw~~ 247 (261)
. ....+.. +....+...+ ..+.-+||+|.+-..
T Consensus 239 ~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~ 285 (400)
T 3lda_A 239 DPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMAL 285 (400)
T ss_dssp CHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGG
T ss_pred ChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhh
Confidence 1 0112222 2223333333 346789999997654
No 130
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.51 E-value=0.0015 Score=51.87 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=21.6
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..++.|+|++|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999765
No 131
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.49 E-value=0.0018 Score=50.73 Aligned_cols=26 Identities=38% Similarity=0.321 Sum_probs=22.8
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+..+|+|.|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35689999999999999999998764
No 132
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.49 E-value=0.0015 Score=50.63 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.1
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+.|.++|++|+||||+++.+.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999765
No 133
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.48 E-value=0.0027 Score=54.11 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=23.3
Q ss_pred CCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 154 GPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 154 ~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.....+++|.|++|+|||||++.+..-
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 446789999999999999999998654
No 134
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.48 E-value=0.0015 Score=55.63 Aligned_cols=42 Identities=19% Similarity=0.161 Sum_probs=35.1
Q ss_pred ccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 131 EVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 131 ~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++|++..++.+...+... .-+.++|++|+|||+||+.+.+.
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH
T ss_pred ceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH
Confidence 5789988888888877653 35789999999999999999875
No 135
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.48 E-value=0.0017 Score=51.15 Aligned_cols=24 Identities=33% Similarity=0.575 Sum_probs=21.4
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+++|+|++|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999765
No 136
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.47 E-value=0.0017 Score=50.55 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.1
Q ss_pred eEEeEeecCCCChHHHHHHHhh
Q 041190 158 SVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
.++.|+|++|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 137
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.46 E-value=0.0098 Score=56.75 Aligned_cols=101 Identities=17% Similarity=0.077 Sum_probs=58.1
Q ss_pred CCCccccccchHHHHHHHhhCCCCC-------CCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCC
Q 041190 128 DEEEVYGREKDKEVIVGLLLGDDLN-------SGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFD 200 (261)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 200 (261)
.-..+.|.++.++.|.+.+...-.. +....+=+-++|++|+|||.+|+.+.+.. ..+| +.++.
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~--~~~f-----~~v~~--- 544 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QANF-----ISIKG--- 544 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT--TCEE-----EECCH---
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh--CCce-----EEecc---
Confidence 3456778888888877765432100 12234456799999999999999999873 2222 22221
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCeEEEEEeCCCCC
Q 041190 201 AVGVTKVILQAAAGSADVNDLNLLQLQLENQLKNKKFLLVLDDMWSE 247 (261)
Q Consensus 201 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LiVlDdvw~~ 247 (261)
.+ +....-..+...+...+...-+...++|+||++.+.
T Consensus 545 -~~--------l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl 582 (806)
T 3cf2_A 545 -PE--------LLTMWFGESEANVREIFDKARQAAPCVLFFDELDSI 582 (806)
T ss_dssp -HH--------HHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGC
T ss_pred -ch--------hhccccchHHHHHHHHHHHHHHcCCceeechhhhHH
Confidence 11 111112223333323333333567899999999764
No 138
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.46 E-value=0.0013 Score=51.25 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=20.4
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999754
No 139
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.45 E-value=0.0022 Score=50.50 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=22.9
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+..+|.|.|++|+||||+++.+.+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999865
No 140
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.44 E-value=0.0016 Score=50.48 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=21.0
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+|.|.|++|+||||+++.+.+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999775
No 141
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.44 E-value=0.017 Score=48.74 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=22.2
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...++.|+|++|+||||++..+...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH
Confidence 4679999999999999999988765
No 142
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.44 E-value=0.0021 Score=50.82 Aligned_cols=25 Identities=36% Similarity=0.407 Sum_probs=22.3
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...+|+|+|++|+||||+++.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999764
No 143
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.42 E-value=0.0017 Score=49.49 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=21.5
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+..+|.|.|++|+||||+++.+.+.
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999775
No 144
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.40 E-value=0.0016 Score=50.31 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=21.2
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+|.|+|++|+||||+++.+.+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457889999999999999999765
No 145
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.40 E-value=0.011 Score=52.89 Aligned_cols=88 Identities=18% Similarity=0.250 Sum_probs=49.8
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCC-HHHHHHHHHHHhc--------CCCCCCC-HHH----
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFD-AVGVTKVILQAAA--------GSADVND-LNL---- 223 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~i~~~i~~~l~--------~~~~~~~-~~~---- 223 (261)
..+.|+|.+|+|||||++.+..+.... .-+..+++.+.+..+ ..+++.++...=. ...+... ...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 368899999999999999998763322 123456677766442 3344444432200 0111111 111
Q ss_pred HHHHHHHHh---CCCeEEEEEeCCCC
Q 041190 224 LQLQLENQL---KNKKFLLVLDDMWS 246 (261)
Q Consensus 224 ~~~~l~~~l---~~kr~LiVlDdvw~ 246 (261)
..-.+-+++ ++++.||++||+-.
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 011233333 58999999999944
No 146
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.39 E-value=0.0015 Score=51.51 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=20.5
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
++++|+|++|+|||||++.+...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999753
No 147
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.39 E-value=0.0021 Score=50.08 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.5
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+|.|.|++|+||||+++.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999765
No 148
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.38 E-value=0.002 Score=50.00 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.3
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998765
No 149
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.38 E-value=0.0018 Score=50.73 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.|.|.|+.|+||||+++.+.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999875
No 150
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.36 E-value=0.002 Score=50.79 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=20.0
Q ss_pred eEEeEeecCCCChHHHHHHHhh
Q 041190 158 SVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 151
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.36 E-value=0.0019 Score=51.67 Aligned_cols=23 Identities=39% Similarity=0.548 Sum_probs=20.5
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+|+|+|++|+||||+++.+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999988654
No 152
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.35 E-value=0.0025 Score=49.54 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=21.9
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+...|.|+|++|+||||+++.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999998765
No 153
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.35 E-value=0.0019 Score=50.59 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=20.2
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+.|.|+|++|+|||||++.+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999765
No 154
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.34 E-value=0.0018 Score=51.24 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=21.5
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+|.|+|++|+|||||++.+...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999765
No 155
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.34 E-value=0.0021 Score=52.88 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=20.7
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++.|.|++|+||||||+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999998765
No 156
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.32 E-value=0.0024 Score=51.26 Aligned_cols=27 Identities=26% Similarity=0.209 Sum_probs=24.1
Q ss_pred CCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 154 GPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 154 ~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+.++|.|.|++|+||||+|+.+.+.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 446789999999999999999999876
No 157
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.32 E-value=0.0031 Score=48.85 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.7
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+|.|.|++|+||||+++.+.+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999775
No 158
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.31 E-value=0.0024 Score=52.67 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.7
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+|.|+|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999765
No 159
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.30 E-value=0.029 Score=49.79 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.7
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+..+|.++|.+|+||||++..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999999998887653
No 160
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.30 E-value=0.003 Score=48.97 Aligned_cols=26 Identities=35% Similarity=0.335 Sum_probs=22.7
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
....+|.+.|++|+||||+++.+...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999775
No 161
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.29 E-value=0.0024 Score=50.35 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=20.1
Q ss_pred eEEeEeecCCCChHHHHHHHhh
Q 041190 158 SVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 162
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.28 E-value=0.0019 Score=49.59 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.6
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+.|.|.|++|+||||+|+.+...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999775
No 163
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.28 E-value=0.0024 Score=54.55 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=32.5
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
..++|.+..+..+...+... ...-+.++|++|+|||++|+.+.+..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~------~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDP------GIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCG------GGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCC------CCceEEEECCCCccHHHHHHHHHHhC
Confidence 45889877655544444321 12238899999999999999998763
No 164
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.28 E-value=0.0026 Score=52.12 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=22.5
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+..+|+|.|++|+||||+|+.+...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999998774
No 165
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.27 E-value=0.0023 Score=52.10 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=21.5
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+++|+|++|+|||||++.+.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999844
No 166
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.26 E-value=0.0026 Score=49.18 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=21.2
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+|.+.|++|+||||+++.+.+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999764
No 167
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.26 E-value=0.031 Score=50.26 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=22.1
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...+++|+|.+|+|||||++.+..-
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH
Confidence 4679999999999999999998764
No 168
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.25 E-value=0.0024 Score=50.64 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.0
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||++.+..-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999998653
No 169
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.25 E-value=0.0019 Score=49.94 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.4
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998764
No 170
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.25 E-value=0.012 Score=52.15 Aligned_cols=25 Identities=28% Similarity=0.228 Sum_probs=21.6
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...++.++|++|+||||++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999888754
No 171
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.25 E-value=0.0027 Score=53.88 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.8
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
....+++|.|++|+|||||++.+..-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 35679999999999999999999764
No 172
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.24 E-value=0.003 Score=49.63 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.8
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...+|.|.|++|+||||+|+.+...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999765
No 173
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.23 E-value=0.0026 Score=49.01 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.9
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...++.|+|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999998875
No 174
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.23 E-value=0.045 Score=46.30 Aligned_cols=39 Identities=13% Similarity=0.084 Sum_probs=28.3
Q ss_pred CceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeC
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVS 196 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~ 196 (261)
.-.++.|.|.+|+||||||..+..+.-.+. ...+|++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE 105 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE 105 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC
Confidence 446899999999999999998876532222 456666654
No 175
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.22 E-value=0.0026 Score=49.64 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=21.1
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+|.|.|++|+||||+++.+.+.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999775
No 176
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.22 E-value=0.003 Score=51.45 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.0
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...+++|.|+.|+|||||++.+...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998764
No 177
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.21 E-value=0.003 Score=49.76 Aligned_cols=24 Identities=29% Similarity=0.446 Sum_probs=21.6
Q ss_pred eEEeEeecCCCChHHHHHHHhhcc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.+|.|.|++|+||||+++.+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998763
No 178
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.20 E-value=0.044 Score=48.56 Aligned_cols=25 Identities=32% Similarity=0.196 Sum_probs=21.8
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...++.++|++|+||||++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998888654
No 179
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.18 E-value=0.0018 Score=49.92 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=17.5
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+|.|.|++|+||||+|+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999765
No 180
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.17 E-value=0.0033 Score=48.42 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=21.8
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+-.+|.+.|+.|+||||+++.+...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999764
No 181
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.17 E-value=0.0024 Score=48.76 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.7
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999775
No 182
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.15 E-value=0.0029 Score=49.14 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=20.3
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+|.|.|++|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 183
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.15 E-value=0.025 Score=50.50 Aligned_cols=65 Identities=23% Similarity=0.225 Sum_probs=42.8
Q ss_pred HHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCC-HHHHHHHHHHH
Q 041190 141 VIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFD-AVGVTKVILQA 211 (261)
Q Consensus 141 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~i~~~i~~~ 211 (261)
+.++.|..-. +-.-++|.|.+|+|||+|++.+.+... +.+-++.+++-+.+... ..++++++...
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~~-~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNVA-KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHTT-TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhhH-hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4555555421 234689999999999999999987631 22335567788887543 45566666553
No 184
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.15 E-value=0.0026 Score=51.00 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.1
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||++.+..-
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999998764
No 185
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.14 E-value=0.024 Score=48.40 Aligned_cols=26 Identities=35% Similarity=0.262 Sum_probs=22.7
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+...+++++|++|+||||+++.+..-
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999988764
No 186
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.13 E-value=0.0031 Score=50.36 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=21.5
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...|.+.|++|+||||+++.+.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999775
No 187
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.13 E-value=0.003 Score=47.97 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.1
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.|.|.|++|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999775
No 188
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.13 E-value=0.0035 Score=49.55 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.7
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+|.|.|++|+||||+++.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 189
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.10 E-value=0.0032 Score=49.76 Aligned_cols=25 Identities=16% Similarity=0.526 Sum_probs=21.9
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+++.|+|++|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999999865
No 190
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.09 E-value=0.0032 Score=50.57 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=21.6
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+...|.|.|++|+||||+++.+.+.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999875
No 191
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.08 E-value=0.0082 Score=46.64 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.2
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+|.|.|+.|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 192
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.08 E-value=0.0036 Score=49.43 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.8
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+|.|.|++|+||||+++.+.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999775
No 193
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.05 E-value=0.004 Score=47.37 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.5
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.++++.|+.|+|||||++.+..-
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999764
No 194
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.05 E-value=0.027 Score=47.30 Aligned_cols=24 Identities=38% Similarity=0.293 Sum_probs=21.0
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..++.++|.+|+||||++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999888654
No 195
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.04 E-value=0.0039 Score=49.78 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=22.0
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.-.++.|+|++|+|||||++.+...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999999999999763
No 196
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.03 E-value=0.048 Score=46.70 Aligned_cols=88 Identities=16% Similarity=0.011 Sum_probs=51.7
Q ss_pred CceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhc----------------------
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAA---------------------- 213 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~---------------------- 213 (261)
.-.++.|.|.+|+||||||..+...... .=..++|++.. .+...+...++....
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~ 120 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAK 120 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHH
Confidence 3468999999999999999998766322 11234555543 344454444433211
Q ss_pred ------------CCCCCCCHHHHHHHHHHHhCC--CeEEEEEeCCCCC
Q 041190 214 ------------GSADVNDLNLLQLQLENQLKN--KKFLLVLDDMWSE 247 (261)
Q Consensus 214 ------------~~~~~~~~~~~~~~l~~~l~~--kr~LiVlDdvw~~ 247 (261)
......+..++...++...+. ..-+||+|-+-..
T Consensus 121 a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm 168 (338)
T 4a1f_A 121 CFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLM 168 (338)
T ss_dssp HHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECC
T ss_pred HHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHh
Confidence 011223566666666655432 5778888876544
No 197
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.02 E-value=0.0043 Score=51.80 Aligned_cols=24 Identities=38% Similarity=0.653 Sum_probs=21.6
Q ss_pred CCceEEeEeecCCCChHHHHHHHh
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVF 178 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~ 178 (261)
....+|+|.|++|+||||+|+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346799999999999999999987
No 198
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.02 E-value=0.0038 Score=50.17 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=22.1
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.-.+++|+|++|+|||||.+.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999999875
No 199
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.01 E-value=0.002 Score=51.01 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=20.0
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+|.|.|+.|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998765
No 200
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.01 E-value=0.0041 Score=52.60 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=21.8
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...+++|+|++|+||||+++.+..-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4579999999999999999998753
No 201
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.00 E-value=0.0039 Score=51.09 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.7
Q ss_pred ceEEeEeecCCCChHHHHHHHhh
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
..+|+|.|+.|+||||+++.+.+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999873
No 202
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.99 E-value=0.0048 Score=48.54 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=23.0
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+-.+|+|+|+.|+||||+++.+.+.
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999998764
No 203
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.98 E-value=0.0037 Score=49.99 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.4
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...|.|.|++|+||||+++.+.+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999775
No 204
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.97 E-value=0.0069 Score=52.19 Aligned_cols=44 Identities=20% Similarity=0.164 Sum_probs=29.4
Q ss_pred ccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 135 REKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 135 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+.-.+.+.+.+...- .......|.++|++|+||||+++.+...
T Consensus 4 ~~~L~~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 4 THKLADDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 3444555555553211 1234567899999999999999988764
No 205
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.97 E-value=0.0038 Score=50.49 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=20.6
Q ss_pred CceEEeEeecCCCChHHHHHHHh
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVF 178 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~ 178 (261)
.-.+++|+|++|+|||||++.+.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 34689999999999999999887
No 206
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.95 E-value=0.0034 Score=50.08 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.3
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...|.+.|++|+||||+++.+.+.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999775
No 207
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.95 E-value=0.0038 Score=50.71 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.6
Q ss_pred ceEEeEeecCCCChHHHHHHHhh
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999965
No 208
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.95 E-value=0.0042 Score=50.67 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=20.5
Q ss_pred eEEeEeecCCCChHHHHHHHhh
Q 041190 158 SVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
.+++|+|+.|+|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999999965
No 209
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.93 E-value=0.005 Score=48.87 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=21.6
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+|.|.|++|+||||+++.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999998765
No 210
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.93 E-value=0.0041 Score=50.12 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.2
Q ss_pred eEEeEeecCCCChHHHHHHHhh
Q 041190 158 SVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999965
No 211
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.92 E-value=0.0041 Score=49.35 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.6
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999765
No 212
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.91 E-value=0.0055 Score=51.82 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=22.3
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...+++|+|+.|+|||||++.+..-
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998764
No 213
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.90 E-value=0.0049 Score=48.27 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=21.2
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+|.|.|+.|+||||+++.+.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999875
No 214
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.87 E-value=0.004 Score=48.87 Aligned_cols=22 Identities=36% Similarity=0.395 Sum_probs=19.9
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+++|+|+.|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998764
No 215
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.87 E-value=0.0053 Score=50.01 Aligned_cols=25 Identities=20% Similarity=0.048 Sum_probs=22.2
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
....|.|.|++|+||||+|+.+.+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999765
No 216
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.86 E-value=0.0057 Score=48.66 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.7
Q ss_pred ceEEeEeecCCCChHHHHHHHhh
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999865
No 217
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.85 E-value=0.0026 Score=49.11 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.9
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|.+|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999765
No 218
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.85 E-value=0.0028 Score=51.09 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=15.9
Q ss_pred eEEeEeecCCCChHHHHHHHh
Q 041190 158 SVIPITGMGGLGKTTLAQLVF 178 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~ 178 (261)
.+++|+|+.|+|||||++.+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999998
No 219
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.84 E-value=0.0058 Score=48.71 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=27.9
Q ss_pred chHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 137 KDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 137 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...+.+...+.. .+...|.|+|.+|+|||||+..+...
T Consensus 24 ~~a~~~r~~~~~------~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 24 RLADKNRKLLNK------HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHH------TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh------CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 344555555432 24688999999999999999988765
No 220
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.84 E-value=0.011 Score=51.14 Aligned_cols=25 Identities=36% Similarity=0.332 Sum_probs=22.1
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...+++|+|++|+||||+++.+..-
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4679999999999999999988764
No 221
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.82 E-value=0.0048 Score=48.99 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.6
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999765
No 222
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.80 E-value=0.0044 Score=49.39 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=20.6
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|+.|+|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999753
No 223
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.78 E-value=0.005 Score=50.09 Aligned_cols=23 Identities=22% Similarity=0.546 Sum_probs=21.0
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|+.|+|||||.+.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999764
No 224
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.77 E-value=0.038 Score=49.57 Aligned_cols=88 Identities=18% Similarity=0.241 Sum_probs=55.1
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCC-HHHHHHHHHHHhc-C--------------CCCCCCH
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFD-AVGVTKVILQAAA-G--------------SADVNDL 221 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~i~~~i~~~l~-~--------------~~~~~~~ 221 (261)
.-++|.|..|+|||+|++.+.++.. +.+-++.+++-+.+... ..+++.++...=. . +.+....
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a-~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~ 244 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIA-KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPG 244 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTT-TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHH-hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHH
Confidence 4589999999999999999987631 22346778888888654 4566666654311 1 1111111
Q ss_pred -----HHHHHHHHHHhC---CCeEEEEEeCCCC
Q 041190 222 -----NLLQLQLENQLK---NKKFLLVLDDMWS 246 (261)
Q Consensus 222 -----~~~~~~l~~~l~---~kr~LiVlDdvw~ 246 (261)
....-.+-++++ ++.+||++||+-.
T Consensus 245 ~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 245 ARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp HHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 122233445554 6899999999844
No 225
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.76 E-value=0.005 Score=50.87 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.6
Q ss_pred ceEEeEeecCCCChHHHHHHHhh
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999965
No 226
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.75 E-value=0.009 Score=47.43 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=27.4
Q ss_pred HHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 139 KEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 139 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...+..++.. -++-+.+.++|++|+||||+|..+.+.
T Consensus 45 ~~~l~~~~~~-----iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKG-----TPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHT-----CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhc-----CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 5556666643 233457999999999999998888776
No 227
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.73 E-value=0.0052 Score=51.17 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=20.2
Q ss_pred eEEeEeecCCCChHHHHHHHhh
Q 041190 158 SVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
.+++|+|+.|+|||||.+.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999865
No 228
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.73 E-value=0.13 Score=46.53 Aligned_cols=42 Identities=24% Similarity=0.148 Sum_probs=27.7
Q ss_pred HHHHHHHhhCCCCC---CCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 139 KEVIVGLLLGDDLN---SGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 139 ~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++|.++|...... ...+..+|.|+|.+|+||||++..+...
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45566666542210 1135779999999999999999888743
No 229
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.72 E-value=0.0063 Score=51.38 Aligned_cols=25 Identities=36% Similarity=0.332 Sum_probs=21.9
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...+++++|++|+||||+++.+..-
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999988754
No 230
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.71 E-value=0.0055 Score=49.90 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.6
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|+.|+|||||.+.+..-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999653
No 231
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.70 E-value=0.0055 Score=50.46 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.2
Q ss_pred eEEeEeecCCCChHHHHHHHhh
Q 041190 158 SVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
.+++|+|+.|+|||||.+.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999864
No 232
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.69 E-value=0.015 Score=46.96 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=23.3
Q ss_pred CceEEeEeecCCCChHHHHHHHhhccc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDAG 182 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 182 (261)
...+|.|.|++|+||||+++.+.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988743
No 233
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.01 Score=45.82 Aligned_cols=26 Identities=35% Similarity=0.336 Sum_probs=22.1
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.....|.++|.+|+|||||.+.+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34557899999999999999998765
No 234
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.66 E-value=0.0064 Score=47.72 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.2
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+|+|.|+.|+||||+++.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999998764
No 235
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.66 E-value=0.0071 Score=47.99 Aligned_cols=41 Identities=24% Similarity=0.212 Sum_probs=30.0
Q ss_pred cccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 134 GREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 134 gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+.++..+.+...+.. .+..++.|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 334455555555532 24689999999999999999988765
No 236
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.66 E-value=0.0061 Score=49.94 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.6
Q ss_pred eEEeEeecCCCChHHHHHHHhh
Q 041190 158 SVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 237
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.65 E-value=0.0065 Score=46.97 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.2
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...++.|+|..|+|||||++.+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 4678999999999999999998865
No 238
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.65 E-value=0.0059 Score=50.48 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.0
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||.+.+..-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 358999999999999999999653
No 239
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.64 E-value=0.0059 Score=50.56 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=20.2
Q ss_pred eEEeEeecCCCChHHHHHHHhh
Q 041190 158 SVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
.+++|+|+.|+|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999965
No 240
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.64 E-value=0.0061 Score=49.26 Aligned_cols=23 Identities=26% Similarity=0.645 Sum_probs=21.0
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|+.|+|||||.+.+..-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999764
No 241
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.63 E-value=0.0066 Score=49.53 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.7
Q ss_pred ceEEeEeecCCCChHHHHHHHhh
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999965
No 242
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.62 E-value=0.0054 Score=49.12 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.6
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|+.|+|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999754
No 243
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.62 E-value=0.0062 Score=49.84 Aligned_cols=23 Identities=43% Similarity=0.580 Sum_probs=20.6
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|+.|+|||||.+.+..-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999653
No 244
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.61 E-value=0.017 Score=49.10 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.0
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
....++.|+|++|+||||++..+...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999887653
No 245
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.61 E-value=0.0065 Score=50.33 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=21.3
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||.+.+..-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 246
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.60 E-value=0.0071 Score=51.36 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=20.7
Q ss_pred CceEEeEeecCCCChHHHHHHHhh
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
+.+||+|+|-||+||||.+-.+.-
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHH
Confidence 578999999999999998876644
No 247
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.57 E-value=0.0066 Score=50.00 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.1
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||.+.+..-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999753
No 248
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.57 E-value=0.0075 Score=49.80 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.1
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||++.+..-
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh
Confidence 469999999999999999988653
No 249
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.56 E-value=0.0071 Score=49.05 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=21.5
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+|.|.|++|+||||+++.+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999765
No 250
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.55 E-value=0.0067 Score=50.37 Aligned_cols=24 Identities=38% Similarity=0.427 Sum_probs=21.1
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||.+.+..-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999653
No 251
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.54 E-value=0.0068 Score=49.99 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.7
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|+.|+|||||.+.+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999653
No 252
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.53 E-value=0.0061 Score=50.00 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.8
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+|.|+|++|+||||+++.+...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999764
No 253
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.52 E-value=0.0043 Score=52.04 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=18.8
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+..+|+|.|..|+||||+|+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998764
No 254
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.51 E-value=0.0079 Score=47.74 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=19.7
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.|.|.|++|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999775
No 255
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.50 E-value=0.008 Score=51.53 Aligned_cols=23 Identities=35% Similarity=0.316 Sum_probs=21.1
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+|.|.|++|+||||||+.+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999998875
No 256
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.50 E-value=0.045 Score=44.19 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=20.9
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+-.-++|.|++|+||||+|+.+.+.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999776
No 257
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.50 E-value=0.0072 Score=50.02 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.6
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|+.|+|||||.+.+..-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998653
No 258
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.49 E-value=0.0087 Score=48.36 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=22.4
Q ss_pred CCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 154 GPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 154 ~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.....+|+|.|+.|+||||+++.+...
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999988763
No 259
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.49 E-value=0.0086 Score=48.26 Aligned_cols=24 Identities=25% Similarity=0.153 Sum_probs=21.4
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...|.+.|++|+||||+|+.+.+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999775
No 260
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.49 E-value=0.0073 Score=49.49 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.6
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|+.|+|||||.+.+..-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999998753
No 261
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.48 E-value=0.017 Score=51.28 Aligned_cols=52 Identities=23% Similarity=0.259 Sum_probs=36.1
Q ss_pred CccccccchHHHHHHHhhCC--------CCCCCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 130 EEVYGREKDKEVIVGLLLGD--------DLNSGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
..++|.+..++.|...+... ........+-+.++|++|+||||+|+.+....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 45788888888876665321 00011234568899999999999999998763
No 262
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.48 E-value=0.0073 Score=50.39 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.6
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|+.|+|||||.+.+..-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999653
No 263
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.48 E-value=0.056 Score=45.33 Aligned_cols=25 Identities=28% Similarity=0.228 Sum_probs=21.6
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...+++++|.+|+||||++..+..-
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999988764
No 264
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.48 E-value=0.0076 Score=49.51 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=20.8
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|+.|+|||||.+.+..-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999764
No 265
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.47 E-value=0.0089 Score=52.77 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=23.0
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+...+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45679999999999999999998775
No 266
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.46 E-value=0.029 Score=49.85 Aligned_cols=88 Identities=20% Similarity=0.190 Sum_probs=51.6
Q ss_pred EEeEeecCCCChHHHHHHHhhccccc-cccc-eeEEEeeCCCC-CHHHHHHHHHHH--hc------CCCCCCCHHH----
Q 041190 159 VIPITGMGGLGKTTLAQLVFNDAGVK-KYFS-FRACAYVSEDF-DAVGVTKVILQA--AA------GSADVNDLNL---- 223 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~-~~~wv~v~~~~-~~~~i~~~i~~~--l~------~~~~~~~~~~---- 223 (261)
-++|.|..|+|||+|+..+.+..... ++=+ ..+++-+.+.. ...+++.++... +. ...+......
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~ 232 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATP 232 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHH
Confidence 46888999999999999998874431 1112 45667777644 345556655443 11 1112111111
Q ss_pred -HHHHHHHHh---CCCeEEEEEeCCCC
Q 041190 224 -LQLQLENQL---KNKKFLLVLDDMWS 246 (261)
Q Consensus 224 -~~~~l~~~l---~~kr~LiVlDdvw~ 246 (261)
..-.+-+++ .++.+||++||+-.
T Consensus 233 ~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 233 RMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 112244554 37999999999843
No 267
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.46 E-value=0.0084 Score=49.73 Aligned_cols=22 Identities=41% Similarity=0.705 Sum_probs=19.7
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++|+|+.|+|||||.+.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999754
No 268
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.45 E-value=0.0097 Score=50.90 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.1
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...+|.|+|+.|+|||||+..+...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999876
No 269
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.45 E-value=0.0081 Score=48.15 Aligned_cols=22 Identities=41% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.|.|.|++|+||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999775
No 270
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.44 E-value=0.0087 Score=48.20 Aligned_cols=26 Identities=27% Similarity=0.107 Sum_probs=22.6
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..-.+|+|.|+.|+|||||++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34579999999999999999998764
No 271
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.40 E-value=0.009 Score=49.97 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.8
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999763
No 272
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.40 E-value=0.02 Score=59.58 Aligned_cols=84 Identities=17% Similarity=0.065 Sum_probs=54.5
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCC------CCCCCHHHHHHHH
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGS------ADVNDLNLLQLQL 228 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~------~~~~~~~~~~~~l 228 (261)
+.-+++-|+|++|+|||+||.++..... .+=...+|+.+.+.++... +..++.. ..+...++....+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 3467899999999999999998876522 2212456788887766554 3344411 1223344555555
Q ss_pred HHHh-CCCeEEEEEeCCC
Q 041190 229 ENQL-KNKKFLLVLDDMW 245 (261)
Q Consensus 229 ~~~l-~~kr~LiVlDdvw 245 (261)
+... ..+.-+||+|++.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 5554 3567899999995
No 273
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.38 E-value=0.0094 Score=50.36 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=21.6
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.-.+++|+|++|+|||||++.+..-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 3468999999999999999998653
No 274
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.35 E-value=0.1 Score=46.43 Aligned_cols=39 Identities=13% Similarity=0.056 Sum_probs=27.4
Q ss_pred CceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeC
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVS 196 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~ 196 (261)
.-.++.|.|.+|+||||||..+..+.-.+ . ..++|++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~-g-~~vl~fSlE 234 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN-D-DVVNLHSLE 234 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT-T-CEEEEECSS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc-C-CEEEEEECC
Confidence 34689999999999999999887763222 1 235566543
No 275
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.34 E-value=0.0098 Score=49.99 Aligned_cols=39 Identities=26% Similarity=0.297 Sum_probs=21.5
Q ss_pred HHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 140 EVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 140 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+...|.... .....++|+|+|-||+||||+|-.+...
T Consensus 26 ~~l~~~l~~~~--~~~~~~vI~v~~KGGvGKTT~a~nLA~~ 64 (307)
T 3end_A 26 GSVQVHLDEAD--KITGAKVFAVYGKGGIGKSTTSSNLSAA 64 (307)
T ss_dssp ----------------CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred chhhhhhcccc--ccCCceEEEEECCCCccHHHHHHHHHHH
Confidence 34444444332 2446789999999999999999877554
No 276
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.33 E-value=0.0096 Score=50.68 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=21.0
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+|.|+|++|+||||||+.+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999775
No 277
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.32 E-value=0.073 Score=47.39 Aligned_cols=90 Identities=12% Similarity=0.060 Sum_probs=52.6
Q ss_pred CceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHH-------------------------
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQ------------------------- 210 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~------------------------- 210 (261)
.-.++.|.|.+|+|||||+..+........ =..++|++... +...+...++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~ 278 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTM 278 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHH
Confidence 346899999999999999999877632211 12455665433 23333333321
Q ss_pred ---HhcC------CCCCCCHHHHHHHHHHHhC-CCeEEEEEeCCCCCC
Q 041190 211 ---AAAG------SADVNDLNLLQLQLENQLK-NKKFLLVLDDMWSEN 248 (261)
Q Consensus 211 ---~l~~------~~~~~~~~~~~~~l~~~l~-~kr~LiVlDdvw~~~ 248 (261)
.+.. .....+..++...++.... .+.-+||+|.+-...
T Consensus 279 a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 279 AMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp HHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSC
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhc
Confidence 1110 1112356667666666553 356789999886543
No 278
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.31 E-value=0.011 Score=50.09 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.9
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+|.|.|++|+||||||..+...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 58899999999999999999765
No 279
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.30 E-value=0.011 Score=50.27 Aligned_cols=25 Identities=40% Similarity=0.591 Sum_probs=22.6
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
++.++.|+|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999864
No 280
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.29 E-value=0.012 Score=54.57 Aligned_cols=43 Identities=28% Similarity=0.325 Sum_probs=35.0
Q ss_pred CccccccchHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 130 EEVYGREKDKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 130 ~~~~gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..++|.+..++.+...+... ..+.|+|++|+||||||+.+..-
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 35788887787777777542 47899999999999999999875
No 281
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.27 E-value=0.013 Score=49.59 Aligned_cols=25 Identities=28% Similarity=0.084 Sum_probs=22.2
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...+|.|+|++|+||||||..+.+.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3578999999999999999999875
No 282
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.26 E-value=0.011 Score=45.90 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.2
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...++|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998765
No 283
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.22 E-value=0.01 Score=49.09 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=20.6
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|+.|+|||||.+.+..-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999753
No 284
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.15 E-value=0.011 Score=51.01 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.2
Q ss_pred eEEeEeecCCCChHHHHHHHhh
Q 041190 158 SVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 5899999999999999999965
No 285
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.15 E-value=0.015 Score=47.34 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=22.8
Q ss_pred CCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 154 GPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 154 ~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.....++.+.|.||+||||++..+...
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 445788999999999999999998743
No 286
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.15 E-value=0.011 Score=48.99 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.2
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.++.|+|++|+|||||+..+...
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999988754
No 287
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.14 E-value=0.031 Score=44.90 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=23.0
Q ss_pred CceEEeEeecCCCChHHHHHHHhhcc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
....|.+.|+.|+||||+++.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998763
No 288
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.13 E-value=0.012 Score=51.22 Aligned_cols=25 Identities=28% Similarity=0.129 Sum_probs=22.2
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...++.|+|++|+|||||++.+...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4569999999999999999999864
No 289
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.13 E-value=0.1 Score=46.99 Aligned_cols=50 Identities=18% Similarity=0.087 Sum_probs=32.3
Q ss_pred CceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHH
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVI 208 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i 208 (261)
.-.++.|.|.+|+|||||+.++..+...+ +=..++|++... +..++...+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHH
Confidence 44688999999999999999887663222 112456666544 344444443
No 290
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.09 E-value=0.012 Score=45.99 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.1
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...++|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999865
No 291
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.09 E-value=0.012 Score=49.36 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=21.3
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||.+.+..-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 358999999999999999999764
No 292
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.08 E-value=0.015 Score=47.06 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.0
Q ss_pred ceEEeEeecCCCChHHHHHHHhhcc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
...|.|.|..|+||||+++.+.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999998763
No 293
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.08 E-value=0.15 Score=45.13 Aligned_cols=51 Identities=20% Similarity=0.083 Sum_probs=32.3
Q ss_pred CceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHH
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVIL 209 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~ 209 (261)
.-.++.|.|.+|+||||||..+..+..... =..++|++... +...+...++
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE~--~~~~l~~R~~ 249 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLEM--PAAQLTLRMM 249 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSS--CHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECCC--CHHHHHHHHH
Confidence 446899999999999999998876632111 12456665543 3444444443
No 294
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=95.07 E-value=0.037 Score=49.66 Aligned_cols=84 Identities=24% Similarity=0.198 Sum_probs=49.8
Q ss_pred eEEeEeecCCCChHHHH-HHHhhccccccccce-eEEEeeCCCCC-HHHHHHHHHHHhc-C-------CCCCCCHH----
Q 041190 158 SVIPITGMGGLGKTTLA-QLVFNDAGVKKYFSF-RACAYVSEDFD-AVGVTKVILQAAA-G-------SADVNDLN---- 222 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~-~~wv~v~~~~~-~~~i~~~i~~~l~-~-------~~~~~~~~---- 222 (261)
.-++|.|.+|+|||+|| ..+.+.. +-+. .+++-+++... ..++..++...=. . ..+.....
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a 238 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLA 238 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHH
Confidence 45789999999999995 5777763 2343 46777777543 4455555544211 1 11111111
Q ss_pred -----HHHHHHHHHhCCCeEEEEEeCCCCC
Q 041190 223 -----LLQLQLENQLKNKKFLLVLDDMWSE 247 (261)
Q Consensus 223 -----~~~~~l~~~l~~kr~LiVlDdvw~~ 247 (261)
.+...++. +++.+||++||+-.-
T Consensus 239 ~~~a~tiAEyfrd--~G~dVLl~~Dsltr~ 266 (502)
T 2qe7_A 239 PYAGCAMGEYFMY--KGKHALVVYDDLSKQ 266 (502)
T ss_dssp HHHHHHHHHHHHT--TTCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHH--cCCcEEEEEecHHHH
Confidence 12233333 589999999998553
No 295
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.07 E-value=0.013 Score=49.05 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.5
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.++.|.|++|+|||||++.+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 468999999999999999998765
No 296
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.06 E-value=0.015 Score=43.16 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=20.3
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.-|.++|.+|+|||||.+.+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999998765
No 297
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.06 E-value=0.027 Score=46.51 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=28.4
Q ss_pred HHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 139 KEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 139 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...+..||... .++-..+.++|++|+|||++|..+.+.
T Consensus 90 ~~~l~~~l~~~----~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 90 ASVFLGWATKK----FGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHTTC----STTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCC----CCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 34466666542 134567999999999999999999874
No 298
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.02 E-value=0.022 Score=49.07 Aligned_cols=38 Identities=26% Similarity=0.297 Sum_probs=27.2
Q ss_pred HHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 139 KEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 139 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...+...+... ..+..+|+|+|.+|+|||||+..+...
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 34444444432 235789999999999999999888643
No 299
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.01 E-value=0.042 Score=43.79 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=22.0
Q ss_pred ceEEeEeecCCCChHHHHHHHhhcc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
-..|.+.|+.|+||||+++.+.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3688999999999999999998763
No 300
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.00 E-value=0.012 Score=45.31 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=19.5
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-|.|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998763
No 301
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.00 E-value=0.073 Score=46.43 Aligned_cols=100 Identities=13% Similarity=0.030 Sum_probs=52.7
Q ss_pred HHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccc-cccceeEEEeeCCCCCH-HHHHHHHHHHhc-CCC
Q 041190 140 EVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVK-KYFSFRACAYVSEDFDA-VGVTKVILQAAA-GSA 216 (261)
Q Consensus 140 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~v~~~~~~-~~i~~~i~~~l~-~~~ 216 (261)
-.+++.|..-. +-.-++|+|.+|+|||+|++.+.+..... ..+.| +++-+.+.... .++.+++...+- ...
T Consensus 163 iraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER~~EV~d~~~~~~G~VV~ata 236 (427)
T 3l0o_A 163 TRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDERPEEVTDIRESTNAIVIAAPF 236 (427)
T ss_dssp HHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCCHHHHSSSSSSCCSEEEECCT
T ss_pred chhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccCcchHHHHHHHhCCeEEEECC
Confidence 35667676532 23467999999999999999988763211 12322 45556553221 111111110000 122
Q ss_pred CCCCHH---------HHHHHHHHHhCCCeEEEEEeCCCCC
Q 041190 217 DVNDLN---------LLQLQLENQLKNKKFLLVLDDMWSE 247 (261)
Q Consensus 217 ~~~~~~---------~~~~~l~~~l~~kr~LiVlDdvw~~ 247 (261)
+..... .+...+++ .++.+||++||+-.-
T Consensus 237 dep~~~r~~~a~~altiAEyfrd--~G~dVLil~DslTR~ 274 (427)
T 3l0o_A 237 DMPPDKQVKVAELTLEMAKRLVE--FNYDVVILLDSLTRL 274 (427)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEECHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH--cCCCEEEecccchHH
Confidence 211111 12233443 689999999999543
No 302
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.99 E-value=0.02 Score=46.00 Aligned_cols=40 Identities=23% Similarity=0.171 Sum_probs=26.8
Q ss_pred CceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCC
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSE 197 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 197 (261)
.-.++.|+|++|+|||||+..+..... ..=...+|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccC
Confidence 346899999999999999887765421 1112355666444
No 303
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.98 E-value=0.0085 Score=50.68 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.7
Q ss_pred ceEEeEeecCCCChHHHHHHHhh
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
-.+++|+|+.|+|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 35899999999999999999965
No 304
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.96 E-value=0.017 Score=43.53 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.4
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+.++|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 305
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.93 E-value=0.023 Score=47.82 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=26.9
Q ss_pred hHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHh
Q 041190 138 DKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVF 178 (261)
Q Consensus 138 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~ 178 (261)
.+++|.+.+.. .+++++|++|+|||||.+.+.
T Consensus 155 gi~~L~~~l~G---------~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 155 GIDELVDYLEG---------FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp THHHHHHHTTT---------CEEEEECSTTSSHHHHHHHHH
T ss_pred CHHHHHhhccC---------cEEEEECCCCCCHHHHHHHHH
Confidence 46777777743 488999999999999999998
No 306
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.93 E-value=0.044 Score=49.29 Aligned_cols=86 Identities=17% Similarity=0.130 Sum_probs=50.2
Q ss_pred eEEeEeecCCCChHHHH-HHHhhccccccccce-eEEEeeCCCCC-HHHHHHHHHHHhc--------CCCCCCCHHHH--
Q 041190 158 SVIPITGMGGLGKTTLA-QLVFNDAGVKKYFSF-RACAYVSEDFD-AVGVTKVILQAAA--------GSADVNDLNLL-- 224 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~-~~wv~v~~~~~-~~~i~~~i~~~l~--------~~~~~~~~~~~-- 224 (261)
.-++|.|.+|+|||+|| ..+.+.. .-+. .+++-+.+... ..++..++...=. ...+.....+.
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 45789999999999995 5777763 2443 46777777543 4455555544211 11121111111
Q ss_pred ---HHHHHHHh--CCCeEEEEEeCCCCC
Q 041190 225 ---QLQLENQL--KNKKFLLVLDDMWSE 247 (261)
Q Consensus 225 ---~~~l~~~l--~~kr~LiVlDdvw~~ 247 (261)
.-.+-+++ +++.+||++||+-.-
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~DslTr~ 279 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDLSKH 279 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccHHHH
Confidence 11233333 589999999998553
No 307
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.93 E-value=0.014 Score=50.41 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.2
Q ss_pred eEEeEeecCCCChHHHHHHHhh
Q 041190 158 SVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
.+++|+|+.|+|||||.+.+..
T Consensus 42 e~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999864
No 308
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.93 E-value=0.016 Score=44.54 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.5
Q ss_pred eEEeEeecCCCChHHHHHHHhh
Q 041190 158 SVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
.+..|+|+.|+|||||+..++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999998853
No 309
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.91 E-value=0.014 Score=50.53 Aligned_cols=23 Identities=30% Similarity=0.353 Sum_probs=20.6
Q ss_pred ceEEeEeecCCCChHHHHHHHhh
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHhc
Confidence 35899999999999999999865
No 310
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.88 E-value=0.012 Score=48.38 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=22.5
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+...|.|.|..|+||||+++.+.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999998776
No 311
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.87 E-value=0.016 Score=43.03 Aligned_cols=22 Identities=27% Similarity=0.637 Sum_probs=19.5
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-|.++|.+|+|||||.+.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999765
No 312
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.86 E-value=0.015 Score=50.71 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=20.2
Q ss_pred eEEeEeecCCCChHHHHHHHhh
Q 041190 158 SVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHc
Confidence 5899999999999999999965
No 313
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.84 E-value=0.015 Score=50.27 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.2
Q ss_pred eEEeEeecCCCChHHHHHHHhh
Q 041190 158 SVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHC
Confidence 5899999999999999999965
No 314
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.81 E-value=0.015 Score=50.27 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.6
Q ss_pred ceEEeEeecCCCChHHHHHHHhh
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 35899999999999999999965
No 315
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.79 E-value=0.027 Score=49.94 Aligned_cols=42 Identities=31% Similarity=0.284 Sum_probs=28.5
Q ss_pred HHHHHHHhhCCCCC---CCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 139 KEVIVGLLLGDDLN---SGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 139 ~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+.|.+++...... ......+|.|+|.+|+||||++..+...
T Consensus 78 ~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 78 YEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp HHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45566666543110 1123579999999999999999888664
No 316
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=94.78 E-value=0.066 Score=48.69 Aligned_cols=84 Identities=12% Similarity=0.044 Sum_probs=51.8
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCH-HHHHHHHHH----Hhc-----------CCCCCCCH
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDA-VGVTKVILQ----AAA-----------GSADVNDL 221 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~-~~i~~~i~~----~l~-----------~~~~~~~~ 221 (261)
.-++|.|..|+|||+|++.+.+.. +-+..+++-+.+..+. .+++.++-+ ..+ ...+....
T Consensus 228 qr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtvvV~~tsd~p~~ 303 (588)
T 3mfy_A 228 GTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVA 303 (588)
T ss_dssp CEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEEEEECCTTSCHH
T ss_pred CeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHHHHhcccccccccccceEEEEECCCCCHH
Confidence 468999999999999999987752 2346778888886653 444444322 011 11111111
Q ss_pred H---------HHHHHHHHHhCCCeEEEEEeCCCCC
Q 041190 222 N---------LLQLQLENQLKNKKFLLVLDDMWSE 247 (261)
Q Consensus 222 ~---------~~~~~l~~~l~~kr~LiVlDdvw~~ 247 (261)
. .+...+++ .++.+||++|++-.-
T Consensus 304 ~r~~~~~~a~tiAEyfrd--~G~dVLl~~DsltR~ 336 (588)
T 3mfy_A 304 AREASIYTGITIAEYFRD--MGYDVALMADSTSRW 336 (588)
T ss_dssp HHHHHHHHHHHHHHHHHH--TTCEEEEEEECTTTC
T ss_pred HHHHHHHHHHHHHHHHHH--cCCCEEEeecchHHH
Confidence 1 12333443 589999999999643
No 317
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.77 E-value=0.021 Score=43.74 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.2
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...|.++|.+|+|||||.+.+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999864
No 318
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.77 E-value=0.016 Score=50.38 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.2
Q ss_pred eEEeEeecCCCChHHHHHHHhh
Q 041190 158 SVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCcHHHHHHHHHHc
Confidence 5899999999999999999965
No 319
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.72 E-value=0.017 Score=50.24 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.5
Q ss_pred ceEEeEeecCCCChHHHHHHHhh
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 35899999999999999999864
No 320
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.70 E-value=0.023 Score=42.45 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=20.6
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.--|.++|.+|+|||||.+.+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999998765
No 321
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.67 E-value=0.025 Score=43.58 Aligned_cols=25 Identities=24% Similarity=0.550 Sum_probs=21.8
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+...|.++|.+|+|||||.+.+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999765
No 322
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.63 E-value=0.048 Score=48.63 Aligned_cols=88 Identities=19% Similarity=0.155 Sum_probs=51.9
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccc--cceeEEEeeCCCC-CHHHHHHHHHHHhc--------CCCCCCCHH----
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKY--FSFRACAYVSEDF-DAVGVTKVILQAAA--------GSADVNDLN---- 222 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~v~~~~-~~~~i~~~i~~~l~--------~~~~~~~~~---- 222 (261)
.-++|.|.+|+|||+|+..+.++....+. =+..+++-+.+.. ...+++.++...=. ...+.....
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 34677899999999999999887543221 1245667777654 34556666654311 111111111
Q ss_pred -HHHHHHHHHh---CCCeEEEEEeCCC
Q 041190 223 -LLQLQLENQL---KNKKFLLVLDDMW 245 (261)
Q Consensus 223 -~~~~~l~~~l---~~kr~LiVlDdvw 245 (261)
...-.+-+++ +++.+||++||+-
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 1122234444 3799999999984
No 323
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.63 E-value=0.051 Score=44.04 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=22.1
Q ss_pred ceEEeEeecCCCChHHHHHHHhhcc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
..+|.|.|+.|+||||+++.+.+..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998764
No 324
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.61 E-value=0.022 Score=49.01 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.8
Q ss_pred CceEEeEeecCCCChHHHHHHHhh
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
...+++|+|.+|+|||||.+.+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999999999875
No 325
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.60 E-value=0.052 Score=45.06 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=29.7
Q ss_pred HHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 139 KEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 139 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++.+.|.............|.|+|.+|+|||||.+.+...
T Consensus 8 ~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 8 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp HHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 455566565432212335668999999999999999999765
No 326
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.59 E-value=0.022 Score=49.46 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.2
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.++.|+|++|+||||+++.+..-
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999988653
No 327
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.58 E-value=0.025 Score=42.79 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=21.6
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+...|.++|.+|+|||||.+.+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998764
No 328
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.57 E-value=0.022 Score=49.92 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.7
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+|.|.|++|+||||||..+...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 58899999999999999998764
No 329
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.56 E-value=0.028 Score=43.12 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.0
Q ss_pred CceEEeEeecCCCChHHHHHHHhhcc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
....|.++|.+|+|||||.+.+....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 34578899999999999999998763
No 330
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.55 E-value=0.02 Score=42.58 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=20.1
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.-|.++|.+|+|||||.+.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998765
No 331
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=94.55 E-value=0.11 Score=47.38 Aligned_cols=50 Identities=12% Similarity=0.048 Sum_probs=35.3
Q ss_pred HHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCC
Q 041190 141 VIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDF 199 (261)
Q Consensus 141 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~ 199 (261)
++++.|..-. +-.-++|.|..|+|||+|++.+.+.. +-+..+++-+.+..
T Consensus 221 rvID~l~Pig-----rGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~ 270 (600)
T 3vr4_A 221 RVIDTFFPVT-----KGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERG 270 (600)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECH
T ss_pred hhhhccCCcc-----CCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccH
Confidence 3556665432 33568999999999999999998763 23457777777753
No 332
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.54 E-value=0.017 Score=49.91 Aligned_cols=23 Identities=39% Similarity=0.614 Sum_probs=20.9
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++.|+|+.|+|||||++.+..-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 58999999999999999999764
No 333
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.54 E-value=0.077 Score=47.05 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=23.6
Q ss_pred CCCCceEEeEeecCCCChHHHHHHHhh
Q 041190 153 SGPGFSVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 153 ~~~~~~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
.....++..|.|.+|+||||+.+...+
T Consensus 157 ~~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 157 HVSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccccEEEEEcCCCCCHHHHHHHHhc
Confidence 356788999999999999999988875
No 334
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=94.54 E-value=0.06 Score=48.44 Aligned_cols=90 Identities=16% Similarity=0.163 Sum_probs=50.9
Q ss_pred eEEeEeecCCCChHHH-HHHHhhcccc----ccccce-eEEEeeCCCCC-HHHHHHHHHHHhc--------CCCCCCCHH
Q 041190 158 SVIPITGMGGLGKTTL-AQLVFNDAGV----KKYFSF-RACAYVSEDFD-AVGVTKVILQAAA--------GSADVNDLN 222 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtL-a~~v~~~~~~----~~~f~~-~~wv~v~~~~~-~~~i~~~i~~~l~--------~~~~~~~~~ 222 (261)
.-++|.|.+|+|||+| +..+.+.... .++-+. .+++-+.+... ..++.+++...=. ...+.....
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~ 242 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPL 242 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHH
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHH
Confidence 4578999999999999 4566666331 122343 56777877543 4455555544211 111111111
Q ss_pred HH-----HHHHHHHh--CCCeEEEEEeCCCCC
Q 041190 223 LL-----QLQLENQL--KNKKFLLVLDDMWSE 247 (261)
Q Consensus 223 ~~-----~~~l~~~l--~~kr~LiVlDdvw~~ 247 (261)
+. .-.+-+++ +++.+||++||+-.-
T Consensus 243 r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 274 (510)
T 2ck3_A 243 QYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQ 274 (510)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHH
Confidence 11 11223333 589999999998553
No 335
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=94.53 E-value=0.042 Score=49.42 Aligned_cols=84 Identities=18% Similarity=0.187 Sum_probs=49.2
Q ss_pred eEEeEeecCCCChHHHH-HHHhhccccccccce-eEEEeeCCCCC-HHHHHHHHHHHhc--------CCCCCCCH-----
Q 041190 158 SVIPITGMGGLGKTTLA-QLVFNDAGVKKYFSF-RACAYVSEDFD-AVGVTKVILQAAA--------GSADVNDL----- 221 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~-~~wv~v~~~~~-~~~i~~~i~~~l~--------~~~~~~~~----- 221 (261)
.-++|.|.+|+|||+|| ..+.+.. .-+. .+++-+++... ..++..++...=. ...+....
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 35789999999999995 5777763 2343 46677777543 3344444433110 11111111
Q ss_pred ----HHHHHHHHHHhCCCeEEEEEeCCCCC
Q 041190 222 ----NLLQLQLENQLKNKKFLLVLDDMWSE 247 (261)
Q Consensus 222 ----~~~~~~l~~~l~~kr~LiVlDdvw~~ 247 (261)
-.+...++. +++.+||++||+-.-
T Consensus 240 ~~~a~tiAEyfrd--~G~dVLli~Dsltr~ 267 (507)
T 1fx0_A 240 PYTGAALAEYFMY--RERHTLIIYDDLSKQ 267 (507)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHH--cCCcEEEEEecHHHH
Confidence 123344444 599999999998543
No 336
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.52 E-value=0.02 Score=50.00 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.6
Q ss_pred ceEEeEeecCCCChHHHHHHHhh
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
-.+++|+|+.|+|||||.+.+..
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 35899999999999999999965
No 337
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.49 E-value=0.022 Score=49.18 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.5
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++.|+|+.|+|||||.+.+..-
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 59999999999999999988653
No 338
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.49 E-value=0.014 Score=50.30 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.7
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|+.|+|||||.+.+..-
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCccHHHHHHHHHcC
Confidence 58999999999999999999753
No 339
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.49 E-value=0.025 Score=48.47 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.5
Q ss_pred CceEEeEeecCCCChHHHHHHHhh
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
...+++|+|++|+|||||.+.+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999874
No 340
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.48 E-value=0.086 Score=54.97 Aligned_cols=86 Identities=15% Similarity=0.030 Sum_probs=57.7
Q ss_pred CceEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCC------CCCCCHHHHHHHHH
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGS------ADVNDLNLLQLQLE 229 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~------~~~~~~~~~~~~l~ 229 (261)
.-.++-|+|++|+||||||.++..... ..=...+|++....++... .+.++.. .++.+.+++...++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 456999999999999999999977632 2223567888877666432 4455521 13445666666665
Q ss_pred HHh-CCCeEEEEEeCCCCCC
Q 041190 230 NQL-KNKKFLLVLDDMWSEN 248 (261)
Q Consensus 230 ~~l-~~kr~LiVlDdvw~~~ 248 (261)
... ..+.-+||+|.+-...
T Consensus 455 ~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp HHHHHTCCSEEEESCGGGCC
T ss_pred HHHHhcCCcEEEECCHHHhh
Confidence 444 3456799999997654
No 341
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.48 E-value=0.028 Score=42.29 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=20.7
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..-|.|+|.+|+|||||.+.+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 356899999999999999998765
No 342
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.47 E-value=0.021 Score=43.85 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=20.1
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.-|.++|.+|+|||||++.+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999999765
No 343
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.47 E-value=0.019 Score=49.66 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=21.2
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...++|+|+.|+|||||++.+..-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999998764
No 344
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.47 E-value=0.025 Score=44.57 Aligned_cols=26 Identities=35% Similarity=0.345 Sum_probs=22.2
Q ss_pred CceEEeEeecCCCChHHHHHHHhhcc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
+...|.++|.+|+|||||.+.+.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999988753
No 345
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.46 E-value=0.022 Score=42.64 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=19.9
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
--|.++|.+|+|||||.+.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999764
No 346
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.46 E-value=0.1 Score=46.29 Aligned_cols=89 Identities=19% Similarity=0.197 Sum_probs=51.8
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccc--------cccc-eeEEEeeCCCC-CHHHHHHHHHHH--hc------CCCCCC
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVK--------KYFS-FRACAYVSEDF-DAVGVTKVILQA--AA------GSADVN 219 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~v~~~~-~~~~i~~~i~~~--l~------~~~~~~ 219 (261)
.-++|.|.+|+|||+|+..+.+..+.. ++=+ ..+++-+.+.. ...++..++... +. ...+..
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 346888999999999999998875432 1222 45566776644 344555554432 10 111222
Q ss_pred CHHH-----HHHHHHHHh---CCCeEEEEEeCCCC
Q 041190 220 DLNL-----LQLQLENQL---KNKKFLLVLDDMWS 246 (261)
Q Consensus 220 ~~~~-----~~~~l~~~l---~~kr~LiVlDdvw~ 246 (261)
.... ..-.+-+++ .++.+||++||+-.
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 2221 122244454 37999999999854
No 347
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.45 E-value=0.022 Score=42.44 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=19.5
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-|.++|.+|+|||||.+.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
No 348
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.44 E-value=0.022 Score=42.65 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.7
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.--|.++|.+|+|||||.+.+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999998765
No 349
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.43 E-value=0.036 Score=46.60 Aligned_cols=34 Identities=24% Similarity=0.448 Sum_probs=28.1
Q ss_pred hHHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 138 DKEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 138 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++++.+.+.. .+++++|++|+|||||.+.+...
T Consensus 159 gv~~lf~~l~g---------eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 159 GIEELKEYLKG---------KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp THHHHHHHHSS---------SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CHHHHHHHhcC---------CeEEEECCCCCcHHHHHHHhccc
Confidence 47777777743 48899999999999999999764
No 350
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.43 E-value=0.023 Score=42.28 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=19.8
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
--|.++|.+|+|||||.+.+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999888754
No 351
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.41 E-value=0.023 Score=42.45 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=19.3
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-|.++|.+|+|||||.+.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988765
No 352
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.40 E-value=0.023 Score=42.51 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.2
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
--|.++|.+|+|||||.+.+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999998765
No 353
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.40 E-value=0.016 Score=45.39 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=21.6
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
....++|+|.+|+|||||.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999988754
No 354
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.39 E-value=0.065 Score=42.69 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=21.5
Q ss_pred eEEeEeecCCCChHHHHHHHhhcc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
..|.+.|+.|+||||+++.+.+..
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999998764
No 355
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.39 E-value=0.021 Score=42.65 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.1
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-|.++|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999988653
No 356
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.37 E-value=0.02 Score=45.33 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.2
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+|.|.|+.|+||||+++.+...
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999988654
No 357
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.37 E-value=0.02 Score=48.88 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=21.0
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|+.|+|||||++.+..-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999875
No 358
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.36 E-value=0.03 Score=42.61 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.4
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..|.|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999865
No 359
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.35 E-value=0.012 Score=50.68 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.2
Q ss_pred eEEeEeecCCCChHHHHHHHhh
Q 041190 158 SVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
.+++|+|+.|+|||||.+.+..
T Consensus 32 e~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999864
No 360
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.35 E-value=0.025 Score=42.28 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.0
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
--|.++|.+|+|||||.+.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999998754
No 361
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.33 E-value=0.088 Score=54.09 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=0.0
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcCCC------CCCCHHHHHHHHHHH
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAGSA------DVNDLNLLQLQLENQ 231 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~~~------~~~~~~~~~~~l~~~ 231 (261)
+++-|+|.+|+||||||.++... ....=...+|++...+++... +..++... .+.+.+++...++..
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~~--~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~l 456 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHHH
Q ss_pred h-CCCeEEEEEeCC
Q 041190 232 L-KNKKFLLVLDDM 244 (261)
Q Consensus 232 l-~~kr~LiVlDdv 244 (261)
. ..+.-+||+|.+
T Consensus 457 v~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 457 ARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHTCCSEEEESCS
T ss_pred HHhcCCCEEEECCH
No 362
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.33 E-value=0.045 Score=44.12 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=19.1
Q ss_pred ceEEeEeecCCCChHHHHHHHhhcc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
-..|.|.|+.|+||||+++.+.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998763
No 363
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.32 E-value=0.027 Score=44.41 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.5
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+.|.|.|++|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56889999999999999998765
No 364
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.32 E-value=0.024 Score=42.78 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=21.1
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...-|.++|.+|+|||||.+.+...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3456899999999999999998754
No 365
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.30 E-value=0.022 Score=47.99 Aligned_cols=20 Identities=40% Similarity=0.675 Sum_probs=18.2
Q ss_pred EeEeecCCCChHHHHHHHhh
Q 041190 160 IPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 160 i~I~G~~GiGKTtLa~~v~~ 179 (261)
|+|+|.+|+|||||.+.++.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 49999999999999999765
No 366
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.30 E-value=0.031 Score=42.27 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=21.4
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+..-|.++|.+|+|||||.+.+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4566899999999999999988765
No 367
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.29 E-value=0.026 Score=43.26 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=21.0
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...-|.++|.+|+|||||.+.+.+.
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999998765
No 368
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.28 E-value=0.036 Score=41.90 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.6
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+..-|.++|.+|+|||||.+.+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999998765
No 369
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.23 E-value=0.026 Score=48.50 Aligned_cols=25 Identities=36% Similarity=0.401 Sum_probs=22.5
Q ss_pred ceEEeEeecCCCChHHHHHHHhhcc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
-.+++|+|+.|+|||||.+.+.+..
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999998873
No 370
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.22 E-value=0.026 Score=42.04 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=18.8
Q ss_pred EeEeecCCCChHHHHHHHhhc
Q 041190 160 IPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 160 i~I~G~~GiGKTtLa~~v~~~ 180 (261)
|.++|.+|+|||||.+.+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999998754
No 371
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.21 E-value=0.026 Score=43.35 Aligned_cols=24 Identities=29% Similarity=0.242 Sum_probs=20.0
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.--|.++|.+|+|||||.+.+.+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 446789999999999999877653
No 372
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.21 E-value=0.023 Score=42.99 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.4
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...-|.|+|.+|+|||||.+.+...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4556899999999999999998765
No 373
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.20 E-value=0.047 Score=52.28 Aligned_cols=54 Identities=24% Similarity=0.165 Sum_probs=38.9
Q ss_pred CCCccccccchHHHHHHHhhCCCCC-------CCCCceEEeEeecCCCChHHHHHHHhhcc
Q 041190 128 DEEEVYGREKDKEVIVGLLLGDDLN-------SGPGFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 128 ~~~~~~gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.-..+.|.+..++.|.+.+...... .-.....+.++|++|+||||||+.+.+..
T Consensus 475 ~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred cccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 3456788888888888876532100 11234568899999999999999998863
No 374
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.20 E-value=0.027 Score=43.08 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.6
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-|.++|.+|+|||||.+.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998765
No 375
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.19 E-value=0.033 Score=42.64 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=21.7
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...-|.++|.+|+|||||.+.+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998765
No 376
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.19 E-value=0.027 Score=42.03 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.0
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
--|.++|.+|+|||||.+.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998764
No 377
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.18 E-value=0.11 Score=46.51 Aligned_cols=83 Identities=17% Similarity=0.202 Sum_probs=49.6
Q ss_pred eEEeEeecCCCChHHHH-HHHhhccccccccce-eEEEeeCCCCC-HHHHHHHHHHHhc-C-------CCCCCCHH----
Q 041190 158 SVIPITGMGGLGKTTLA-QLVFNDAGVKKYFSF-RACAYVSEDFD-AVGVTKVILQAAA-G-------SADVNDLN---- 222 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~-~~wv~v~~~~~-~~~i~~~i~~~l~-~-------~~~~~~~~---- 222 (261)
.-++|.|..|+|||+|+ ..+.+. .+-+. .+++-+++..+ ..++..++.+.=. . ..+.....
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a 238 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLA 238 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHH
Confidence 45789999999999996 566664 22333 46778887543 4555555443211 1 11111111
Q ss_pred -----HHHHHHHHHhCCCeEEEEEeCCCC
Q 041190 223 -----LLQLQLENQLKNKKFLLVLDDMWS 246 (261)
Q Consensus 223 -----~~~~~l~~~l~~kr~LiVlDdvw~ 246 (261)
.+...+++ +++.+||++||+-.
T Consensus 239 ~~~a~tiAEyfrd--~G~dVLli~Dsltr 265 (513)
T 3oaa_A 239 PYAGCAMGEYFRD--RGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHh--cCCCEEEEecChHH
Confidence 22333443 68999999999854
No 378
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.17 E-value=0.078 Score=41.61 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=19.9
Q ss_pred EEeEeecCCCChHHHHHHHhhcc
Q 041190 159 VIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.|.|=|.-|+||||.++.+.+..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46778999999999999998763
No 379
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.12 E-value=0.028 Score=43.28 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=20.1
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 446789999999999999877654
No 380
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.11 E-value=0.029 Score=42.36 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=21.8
Q ss_pred CceEEeEeecCCCChHHHHHHHhhcc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
...-|.|+|.+|+|||||.+.+....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 34568999999999999999987653
No 381
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.11 E-value=0.035 Score=41.50 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=19.0
Q ss_pred eEEeEeecCCCChHHHHHHHhh
Q 041190 158 SVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
--|.++|.+|+|||||.+.+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999998853
No 382
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.11 E-value=0.047 Score=41.19 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=20.5
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999988754
No 383
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.10 E-value=0.03 Score=42.73 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.1
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...-|.++|.+|+|||||.+.+.+.
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3456889999999999999998765
No 384
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.09 E-value=0.031 Score=43.42 Aligned_cols=23 Identities=30% Similarity=0.075 Sum_probs=18.6
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++.|+|+.|+||||++..+...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999998555443
No 385
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.09 E-value=0.03 Score=42.22 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=19.8
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.-|.|+|.+|+|||||.+.+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998754
No 386
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.07 E-value=0.029 Score=42.80 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=20.2
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
--|.++|.+|+|||||.+.+.+.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999999765
No 387
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.06 E-value=0.03 Score=43.26 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.2
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..|.++|.+|+|||||.+.+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46799999999999999998764
No 388
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.03 E-value=0.027 Score=49.76 Aligned_cols=21 Identities=48% Similarity=0.699 Sum_probs=19.3
Q ss_pred EeEeecCCCChHHHHHHHhhc
Q 041190 160 IPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 160 i~I~G~~GiGKTtLa~~v~~~ 180 (261)
++|+|++|+|||||.+.++.-
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999999753
No 389
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.00 E-value=0.033 Score=46.99 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.7
Q ss_pred CCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 154 GPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 154 ~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+....|+|+|.+|+|||||.+.+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 456789999999999999999998765
No 390
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.99 E-value=0.034 Score=50.48 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=21.8
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...+|.++|++|+||||+|+.+...
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999764
No 391
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.97 E-value=0.031 Score=42.74 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=21.2
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...-|.|+|.+|+|||||.+.+.+.
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999999764
No 392
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.96 E-value=0.037 Score=43.10 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=19.9
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.-|.++|.+|+|||||.+.+.+.
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999998753
No 393
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.96 E-value=0.031 Score=43.03 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=20.8
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..--|.++|.+|+|||||.+.+.+.
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 3456889999999999999888754
No 394
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.96 E-value=0.036 Score=48.79 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.7
Q ss_pred CceEEeEeecCCCChHHHHHHHhh
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
...+++|+|++|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 346999999999999999999987
No 395
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.94 E-value=0.031 Score=43.05 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=20.9
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..-|.|+|.+|+|||||.+.+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998764
No 396
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.94 E-value=0.027 Score=50.35 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.7
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|+.|+|||||++.++.-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 58999999999999999998764
No 397
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.93 E-value=0.035 Score=46.66 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=22.1
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+...++|+|.+|+|||||.+.+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4568999999999999999999765
No 398
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.93 E-value=0.032 Score=42.39 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=20.7
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..-|.++|.+|+|||||.+.+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456889999999999999998764
No 399
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.92 E-value=0.032 Score=42.26 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=20.6
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..-|.++|.+|+|||||.+.+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999998765
No 400
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.92 E-value=0.033 Score=42.38 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=19.8
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
--|.++|.+|+|||||.+.+.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999888754
No 401
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.90 E-value=0.043 Score=41.04 Aligned_cols=24 Identities=33% Similarity=0.302 Sum_probs=20.7
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..-|.++|.+|+|||||.+.+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999754
No 402
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.90 E-value=0.034 Score=42.21 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=20.7
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..-|.++|.+|+|||||.+.+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999998754
No 403
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.89 E-value=0.077 Score=44.42 Aligned_cols=41 Identities=10% Similarity=0.108 Sum_probs=29.2
Q ss_pred HHHHHHHhhCCCCCCCCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 139 KEVIVGLLLGDDLNSGPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 139 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++|.+.+..-.. ....+..|+|+|.+|+|||||.+.+...
T Consensus 7 ~~~l~~~~~~~~~-~~~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 7 INKLQDVFNTLGS-DPLDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp HHHHHHHTTTSSS-CTTCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCC-CCCCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 4555555543222 1345778999999999999999999764
No 404
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.89 E-value=0.034 Score=49.07 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.4
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.++.|+|+.|+||||+.+.+...
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999998764
No 405
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.88 E-value=0.043 Score=43.72 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.9
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+...|.|+|.+|+|||||.+.+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998765
No 406
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.88 E-value=0.05 Score=41.33 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=21.4
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..--|.|+|.+|+|||||.+.+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456789999999999999998865
No 407
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.83 E-value=0.039 Score=47.23 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=21.4
Q ss_pred CceEEeEeecCCCChHHHHHHHhh
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
+..+++|+|.+|+|||||++.+..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 568999999999999999998854
No 408
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.83 E-value=0.036 Score=42.81 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=20.8
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.--|.|+|.+|+|||||.+.+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999998765
No 409
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=93.83 E-value=0.051 Score=42.91 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=21.7
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...+|+|+|++|+||+|+|..+-+.
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~ 34 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSR 34 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHH
Confidence 4579999999999999999888653
No 410
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.80 E-value=0.045 Score=48.81 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.7
Q ss_pred EEeEeecCCCChHHHHHHHhhcc
Q 041190 159 VIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.+.|.|.+|+||||++..+....
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999999999887763
No 411
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.79 E-value=0.028 Score=42.58 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=20.4
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.--|.++|.+|+|||||.+.+.+.
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999998764
No 412
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.77 E-value=0.036 Score=42.02 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=20.0
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
--|.++|.+|+|||||.+.+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999988765
No 413
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.76 E-value=0.036 Score=41.92 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.7
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..-|.++|.+|+|||||.+.+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456899999999999999998764
No 414
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.75 E-value=0.036 Score=43.13 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=21.5
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...-|.|+|.+|+|||||.+.+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567899999999999999998765
No 415
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.74 E-value=0.046 Score=45.03 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.0
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...|+++|.+|+|||||.+.+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999998764
No 416
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.74 E-value=0.036 Score=42.88 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.6
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..-|.++|.+|+|||||.+.+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356789999999999999998765
No 417
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.74 E-value=0.087 Score=41.62 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.1
Q ss_pred eEEeEeecCCCChHHHHHHHhhcc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
..|.|-|..|+||||+++.+.+..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 468888999999999999998874
No 418
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.71 E-value=0.052 Score=42.09 Aligned_cols=25 Identities=28% Similarity=0.562 Sum_probs=21.2
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...-|.|+|.+|+|||||.+.+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999998754
No 419
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.71 E-value=0.025 Score=52.24 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=19.9
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-+.++|++|+|||+||+.+.+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTT
T ss_pred ceEEECCCchHHHHHHHHHHHh
Confidence 5789999999999999999875
No 420
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.70 E-value=0.027 Score=51.55 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=21.8
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.++.|+|+.|+|||||++.+...
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHh
Confidence 468999999999999999999875
No 421
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.69 E-value=0.037 Score=42.96 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=20.9
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..-|.|+|.+|+|||||.+.+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998765
No 422
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.69 E-value=0.038 Score=42.58 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=20.7
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 345789999999999999998865
No 423
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.69 E-value=0.038 Score=42.84 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=20.2
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+..-|.++|.+|+|||||.+.+.+.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc
Confidence 3456799999999999999977664
No 424
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.69 E-value=0.037 Score=47.76 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.9
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|++|+|||||.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 48899999999999999999864
No 425
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.67 E-value=0.042 Score=42.38 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=22.1
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
....-|.|+|.+|+|||||.+.+.+.
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 35667899999999999999998765
No 426
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.66 E-value=0.038 Score=41.95 Aligned_cols=25 Identities=32% Similarity=0.258 Sum_probs=21.2
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+..-|.++|.+|+|||||.+.+...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3467889999999999999998753
No 427
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.66 E-value=0.037 Score=42.26 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=22.0
Q ss_pred CceEEeEeecCCCChHHHHHHHhhcc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
+..-|.++|.+|+|||||.+.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34678999999999999999998654
No 428
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.65 E-value=0.038 Score=42.47 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=21.9
Q ss_pred CceEEeEeecCCCChHHHHHHHhhcc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
...-|.|+|.+|+|||||.+.+.+..
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34568999999999999999988653
No 429
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.64 E-value=0.18 Score=54.25 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=0.0
Q ss_pred EeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHh---------------cCCCCCCCHHHH
Q 041190 160 IPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAA---------------AGSADVNDLNLL 224 (261)
Q Consensus 160 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l---------------~~~~~~~~~~~~ 224 (261)
+-++|++|+|||++|+.+... ..--....++.+..-+...+.+.+-..+ +
T Consensus 1270 vLL~GPpGtGKT~la~~~l~~----~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~----------- 1334 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALRN----SSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSD----------- 1334 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHHS----CSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSS-----------
T ss_pred EEEECCCCCCHHHHHHHHHhc----CCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCC-----------
Q ss_pred HHHHHHHhCCCeEEEEEeCC
Q 041190 225 QLQLENQLKNKKFLLVLDDM 244 (261)
Q Consensus 225 ~~~l~~~l~~kr~LiVlDdv 244 (261)
+|+.++++||+
T Consensus 1335 ---------gk~~VlFiDEi 1345 (2695)
T 4akg_A 1335 ---------IKNLVLFCDEI 1345 (2695)
T ss_dssp ---------SSCEEEEEETT
T ss_pred ---------CceEEEEeccc
No 430
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.64 E-value=0.04 Score=42.86 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.5
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+..-|.|+|.+|+|||||.+.+.+.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3456899999999999999998865
No 431
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.64 E-value=0.04 Score=43.17 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=20.6
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..-|.|+|.+|+|||||.+.+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999988754
No 432
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.63 E-value=0.045 Score=50.32 Aligned_cols=26 Identities=23% Similarity=0.139 Sum_probs=22.7
Q ss_pred CCceEEeEeecCCCChHHHHHHHhhc
Q 041190 155 PGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 155 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
++..+|.|.|++|+||||+|+.+.+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~ 419 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVT 419 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999775
No 433
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.63 E-value=0.034 Score=43.28 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.1
Q ss_pred CceEEeEeecCCCChHHHHHHHh
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVF 178 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~ 178 (261)
...-|.++|.+|+|||||.+.+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999999985
No 434
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.62 E-value=0.04 Score=43.27 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=20.9
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..-|.++|.+|+|||||.+.+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999765
No 435
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.61 E-value=0.039 Score=49.55 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=20.5
Q ss_pred eEEeEeecCCCChHHHHHHHhh
Q 041190 158 SVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 7999999999999999999875
No 436
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.60 E-value=0.04 Score=42.32 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.0
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..-|.|+|.+|+|||||.+.+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999998765
No 437
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.59 E-value=0.048 Score=43.86 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=22.3
Q ss_pred CceEEeEeecCCCChHHHHHHHhhcc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
...-|.++|.+|+|||||.+.+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 45678999999999999999998653
No 438
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.59 E-value=0.036 Score=50.59 Aligned_cols=23 Identities=39% Similarity=0.738 Sum_probs=20.9
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|+.|+|||||++.++.-
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999864
No 439
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.58 E-value=0.048 Score=42.97 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=21.7
Q ss_pred eEEeEeecCCCChHHHHHHHhhcc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.+|.|.|+.|+||||+++.+.+..
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 589999999999999999997763
No 440
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.58 E-value=0.04 Score=48.92 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=22.4
Q ss_pred ceEEeEeecCCCChHHHHHHHhhcc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
-.+++|+|+.|+|||||++.+....
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 4689999999999999999998863
No 441
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.57 E-value=0.041 Score=42.32 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=20.6
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..-|.|+|.+|+|||||.+.+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 346789999999999999999764
No 442
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.55 E-value=0.041 Score=42.44 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=21.3
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..--|.++|.+|+|||||.+.+.+.
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3456789999999999999998765
No 443
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.54 E-value=0.045 Score=44.77 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=19.4
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
++|+|.|-||+||||+|-.+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~ 24 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG 24 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHHH
Confidence 57888899999999999877654
No 444
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.52 E-value=0.041 Score=42.81 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=20.5
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...-|.|+|.+|+|||||.+.+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999988754
No 445
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.52 E-value=0.039 Score=50.37 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=21.1
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|+.|+|||||++.++.-
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 446
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.51 E-value=0.044 Score=42.98 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=20.4
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+...|.++|.+|+|||||.+.+...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456889999999999999998765
No 447
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.50 E-value=0.051 Score=50.41 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.4
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+..+|.+.|++|+||||+|+.+.+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~ 75 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEY 75 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999999998765
No 448
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.50 E-value=0.062 Score=41.29 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=20.8
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.--|.|+|.+|+|||||.+.+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999999875
No 449
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.47 E-value=0.042 Score=42.30 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=20.5
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 345789999999999999998764
No 450
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.47 E-value=0.043 Score=42.09 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.3
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.-|.++|.+|+|||||.+.+.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999998765
No 451
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.46 E-value=0.04 Score=50.27 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.2
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||++.+..-
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999753
No 452
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.45 E-value=0.045 Score=42.20 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=20.6
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..-|.|+|.+|+|||||.+.+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 356799999999999999998764
No 453
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.45 E-value=0.045 Score=42.66 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=20.8
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..-|.|+|.+|+|||||.+.+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998764
No 454
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.43 E-value=0.044 Score=42.06 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=21.2
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+..-|.++|.+|+|||||.+.+...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3456899999999999999998754
No 455
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.43 E-value=0.046 Score=48.89 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.3
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+|.++|++|+||||+++.+.+.
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999998765
No 456
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.42 E-value=0.042 Score=50.10 Aligned_cols=25 Identities=24% Similarity=0.550 Sum_probs=21.8
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3469999999999999999998763
No 457
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.42 E-value=0.043 Score=42.57 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=21.0
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...-|.|+|.+|+|||||.+.+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3467899999999999999998754
No 458
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.42 E-value=0.044 Score=41.79 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=20.7
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..-|.++|.+|+|||||.+.+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356789999999999999998764
No 459
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.41 E-value=0.054 Score=40.45 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=19.0
Q ss_pred eEEeEeecCCCChHHHHHHHh
Q 041190 158 SVIPITGMGGLGKTTLAQLVF 178 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~ 178 (261)
.+..|+|+.|+||||+...++
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 588999999999999998875
No 460
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.40 E-value=0.051 Score=45.08 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=20.0
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.++|+|.|-||+||||+|-.+...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~ 25 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAA 25 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHH
Confidence 367888999999999999877654
No 461
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.39 E-value=0.045 Score=42.44 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=19.7
Q ss_pred ceEEeEeecCCCChHHHHHHHhh
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
..-|.|+|.+|+|||||.+.+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35689999999999999988864
No 462
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.39 E-value=0.043 Score=42.51 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=19.9
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..-|.++|.+|+|||||.+.+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999988754
No 463
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.37 E-value=0.066 Score=40.95 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.0
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..-|.++|.+|+|||||.+.+.+.
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 467899999999999999998854
No 464
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=93.37 E-value=0.082 Score=48.03 Aligned_cols=37 Identities=19% Similarity=0.069 Sum_probs=29.2
Q ss_pred eEEeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCC
Q 041190 158 SVIPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSED 198 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~ 198 (261)
.-++|.|..|+|||+|+..+.+.. +-+..+++-+++.
T Consensus 222 qr~~Ifg~~g~GKT~l~~~ia~~~----~~~v~V~~~iGER 258 (578)
T 3gqb_A 222 GTAAIPGPFGSGKSVTQQSLAKWS----NADVVVYVGSGER 258 (578)
T ss_dssp CEEEECCCTTSCHHHHHHHHHHHS----SCSEEEEEEEEEC
T ss_pred CEEeeeCCCCccHHHHHHHHHhcc----CCCEEEEEEeccc
Confidence 468999999999999999998763 2345677777775
No 465
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.36 E-value=0.32 Score=39.09 Aligned_cols=90 Identities=13% Similarity=0.120 Sum_probs=48.9
Q ss_pred EeEeecCCCChHHHHHHHhhccccccccceeEEEeeCCCCCHHHHHHHHHHHhcC---C---------CCC-----CCHH
Q 041190 160 IPITGMGGLGKTTLAQLVFNDAGVKKYFSFRACAYVSEDFDAVGVTKVILQAAAG---S---------ADV-----NDLN 222 (261)
Q Consensus 160 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i~~~i~~~l~~---~---------~~~-----~~~~ 222 (261)
+.++|+.|.|||.+|..+.... .. ..+++. +. ..+..++.+.+.. . ... ...+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~----~~-~~liv~-P~----~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~ 180 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL----ST-PTLIVV-PT----LALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYD 180 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS----CS-CEEEEE-SS----HHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc----CC-CEEEEe-CC----HHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHH
Confidence 7788999999999998877652 11 123332 22 1223333333221 0 000 0123
Q ss_pred HHHHHHHHHhCCCeEEEEEeCCCCCChhhHHHhhcccC
Q 041190 223 LLQLQLENQLKNKKFLLVLDDMWSENYDVWTNLCKPFK 260 (261)
Q Consensus 223 ~~~~~l~~~l~~kr~LiVlDdvw~~~~~~w~~l~~~l~ 260 (261)
.+.... +.+.++--+||+|++-......|..+...++
T Consensus 181 ~l~~~~-~~~~~~~~llIiDEaH~l~~~~~~~i~~~~~ 217 (237)
T 2fz4_A 181 SAYVNA-EKLGNRFMLLIFDEVHHLPAESYVQIAQMSI 217 (237)
T ss_dssp HHHHTH-HHHTTTCSEEEEECSSCCCTTTHHHHHHTCC
T ss_pred HHHhhH-HHhcccCCEEEEECCccCCChHHHHHHHhcc
Confidence 333323 2344556799999999876667777665543
No 466
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.33 E-value=0.046 Score=43.09 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.2
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.--|.++|.+|+|||||.+.+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999998754
No 467
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.32 E-value=0.041 Score=42.26 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=21.3
Q ss_pred ceEEeEeecCCCChHHHHHHHhhcc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
..-|.++|.+|+|||||.+.+....
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999997654
No 468
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.32 E-value=0.041 Score=42.52 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=19.9
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..-|.|+|.+|+|||||.+.+.++
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999998754
No 469
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.31 E-value=0.041 Score=48.54 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=19.1
Q ss_pred EeEeecCCCChHHHHHHHhhc
Q 041190 160 IPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 160 i~I~G~~GiGKTtLa~~v~~~ 180 (261)
|+|+|.+|+|||||.+.++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 499999999999999999764
No 470
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.29 E-value=0.049 Score=42.60 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.3
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.-|.++|.+|+|||||.+.+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998764
No 471
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.23 E-value=0.043 Score=49.71 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=20.4
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..+.|+|++|+||||+++.+..-
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999998764
No 472
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.21 E-value=0.049 Score=42.50 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=20.8
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..-|.|+|.+|+|||||.+.+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999998754
No 473
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.21 E-value=0.065 Score=48.48 Aligned_cols=27 Identities=7% Similarity=-0.093 Sum_probs=23.6
Q ss_pred CceEEeEeecCCCChHHHHHHHhhccc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDAG 182 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 182 (261)
+..+|.+.|++|+||||+|+.+.....
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999988743
No 474
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.18 E-value=0.053 Score=41.75 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=20.8
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..-|.++|.+|+|||||.+.+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999998765
No 475
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.16 E-value=0.064 Score=41.45 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=20.6
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..-|.|+|.+|+|||||.+.+...
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999998654
No 476
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.13 E-value=0.051 Score=43.74 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=18.7
Q ss_pred EEeEeecCCCChHHHHHHHhhc
Q 041190 159 VIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 159 vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.|.+.|.||+||||+|-.+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4788899999999998777665
No 477
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.13 E-value=0.054 Score=42.23 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=21.3
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
...-|.|+|.+|+|||||.+.+.+.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 3456899999999999999998754
No 478
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.12 E-value=0.048 Score=50.48 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=21.0
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|+.|+|||||++.+..-
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999864
No 479
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.08 E-value=0.055 Score=42.07 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.2
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.-|.++|.+|+|||||.+.+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998764
No 480
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.07 E-value=0.055 Score=42.26 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=20.2
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.--|.++|.+|+|||||.+.+.+.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346789999999999999888754
No 481
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.03 E-value=0.068 Score=43.51 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=21.5
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
....|.|+|.+|+|||||.+.+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999998754
No 482
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.00 E-value=0.056 Score=49.78 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.0
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||++.+..-
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc
Confidence 358999999999999999999653
No 483
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.99 E-value=0.058 Score=42.22 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=20.9
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..--|.|+|.+|+|||||.+.+.+.
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999988754
No 484
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.98 E-value=0.052 Score=50.24 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.2
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||.+.+..-
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHhcC
Confidence 459999999999999999998753
No 485
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=92.97 E-value=0.065 Score=45.03 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=21.9
Q ss_pred CceEEeEeecCCCChHHHHHHHhhc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+...|+|+|.+|+|||||.+.+...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999998765
No 486
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.95 E-value=0.052 Score=50.25 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=20.6
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|+.|+|||||++.+..-
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhcC
Confidence 46899999999999999999764
No 487
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.89 E-value=0.06 Score=43.21 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=20.3
Q ss_pred CceEEeEeecCCCChHHHHHHHhh
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFN 179 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~ 179 (261)
.-.++-|.|.+|+|||+||.++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 446899999999999999988653
No 488
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=92.89 E-value=0.041 Score=43.41 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.3
Q ss_pred CceEEeEeecCCCChHHHHHHHhhcc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
+...|.|+|.+|+|||||.+.+....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999998764
No 489
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=92.88 E-value=0.053 Score=50.21 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=22.9
Q ss_pred CCCceEEeEeecCCCChHHHHHHHhhc
Q 041190 154 GPGFSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 154 ~~~~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
+-.++.++|+|..|+|||||.+.+..-
T Consensus 42 ~l~lp~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 42 DLALPAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp SCCCCCEECCCCTTSCHHHHHHHHHSC
T ss_pred cccCCeEEEECCCCChHHHHHHHHhCC
Confidence 345677999999999999999999753
No 490
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.86 E-value=0.076 Score=42.40 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.2
Q ss_pred ceEEeEeecCCCChHHHHHHHhhcc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
-..|.+-|+.|+||||+++.+.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3688999999999999999998874
No 491
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.83 E-value=0.033 Score=42.39 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=10.3
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..-|.|+|.+|+|||||.+.+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999888654
No 492
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.81 E-value=0.048 Score=41.79 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=20.6
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
..-|.++|.+|+|||||.+.+...
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999998654
No 493
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.79 E-value=0.058 Score=42.35 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.7
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.--|.|+|.+|+|||||.+.+...
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998764
No 494
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=92.78 E-value=0.068 Score=43.46 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.3
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+|+|+|..|+||||+++.+-..
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~ 24 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999988653
No 495
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.78 E-value=0.056 Score=50.06 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.2
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||.+.+..-
T Consensus 117 Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 117 GMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 458999999999999999998753
No 496
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=92.76 E-value=0.061 Score=46.54 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=21.7
Q ss_pred CceEEeEeecCCCChHHHHHHHhhcc
Q 041190 156 GFSVIPITGMGGLGKTTLAQLVFNDA 181 (261)
Q Consensus 156 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 181 (261)
.+++++|+|.+|+|||||.+.+....
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 46679999999999999999998653
No 497
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.71 E-value=0.064 Score=42.31 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.0
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
--|.|+|.+|+|||||.+.+.+.
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45789999999999999998765
No 498
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=92.68 E-value=0.058 Score=44.51 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=19.6
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
--|.|+|.+|+|||||.+.++..
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999987654
No 499
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.67 E-value=0.06 Score=49.56 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.0
Q ss_pred ceEEeEeecCCCChHHHHHHHhhc
Q 041190 157 FSVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 157 ~~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
-.+++|+|+.|+|||||++.+..-
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998653
No 500
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.65 E-value=0.029 Score=47.39 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.2
Q ss_pred eEEeEeecCCCChHHHHHHHhhc
Q 041190 158 SVIPITGMGGLGKTTLAQLVFND 180 (261)
Q Consensus 158 ~vi~I~G~~GiGKTtLa~~v~~~ 180 (261)
.+++|+|++|+|||||.+.+...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 48999999999999999999754
Done!