BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041192
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|B Chain B, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|C Chain C, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|D Chain D, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
Length = 151
Score = 89.7 bits (221), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 79/139 (56%), Gaps = 5/139 (3%)
Query: 4 MTGNPFGVLEQTTLKIPKRADNHQTLALATADWMETPTAHVITLDIPGMKKDDVKIEIEE 63
+ +PF I A A DW ETP AHV D+PG+KK++VK+E+E+
Sbjct: 16 LWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVED 75
Query: 64 NKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLEHVKAHQENGVLR 123
VL VSGER + K +KWHR ER SGKF R+F++ A +E VKA ENGVL
Sbjct: 76 GNVLVVSGERTKEKEDKN----DKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLT 131
Query: 124 ITVPKLAEEKKRQPNVINI 142
+TVPK AE KK + I I
Sbjct: 132 VTVPK-AEVKKPEVKAIQI 149
>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|B Chain B, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|C Chain C, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|D Chain D, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|E Chain E, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|F Chain F, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|G Chain G, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|H Chain H, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|I Chain I, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|J Chain J, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|K Chain K, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|L Chain L, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
Length = 101
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 67/99 (67%), Gaps = 4/99 (4%)
Query: 32 ATADWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRA 91
A DW ETP AHV D+PG+KK++VK+E+E+ VL VSGER + K +KWHR
Sbjct: 2 ARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKN----DKWHRV 57
Query: 92 ERISGKFWRQFKMPMSADLEHVKAHQENGVLRITVPKLA 130
ER SGKF R+F++ A +E VKA ENGVL +TVPK A
Sbjct: 58 ERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAA 96
>pdb|2H50|A Chain A, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|B Chain B, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|C Chain C, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|D Chain D, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|E Chain E, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|F Chain F, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|G Chain G, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|H Chain H, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|I Chain I, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|J Chain J, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|K Chain K, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|L Chain L, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|M Chain M, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|N Chain N, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|O Chain O, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|P Chain P, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|R Chain R, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|S Chain S, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|T Chain T, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|U Chain U, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|V Chain V, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|W Chain W, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|X Chain X, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|A Chain A, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|B Chain B, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|C Chain C, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|D Chain D, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|E Chain E, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|F Chain F, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|G Chain G, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|H Chain H, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|I Chain I, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|J Chain J, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|K Chain K, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|L Chain L, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|M Chain M, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|N Chain N, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|O Chain O, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|P Chain P, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|R Chain R, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|S Chain S, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|T Chain T, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|U Chain U, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|V Chain V, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|W Chain W, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|X Chain X, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
Length = 93
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 66/97 (68%), Gaps = 4/97 (4%)
Query: 32 ATADWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRA 91
A DW ETP AHV D+PG+KK++VK+E+E+ VL VSGER + K +KWHR
Sbjct: 1 ARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKN----DKWHRV 56
Query: 92 ERISGKFWRQFKMPMSADLEHVKAHQENGVLRITVPK 128
ER SGKF R+F++ A +E VKA ENGVL +TVPK
Sbjct: 57 ERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPK 93
>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GT6|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GUF|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GUF|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
Length = 103
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 13/105 (12%)
Query: 31 LATADWM------ETPTAHVITLDIPGMKKDDVKIEIEENK-VLRVSGERKSDDYYKEGV 83
+ TA W+ E V+ D+PG+ D +IE++ +K +L + GERKS+
Sbjct: 1 VVTAQWVPRVDIKEEVNHFVLYADLPGI--DPSQIEVQMDKGILSIRGERKSE----SST 54
Query: 84 QREKWHRAERISGKFWRQFKMPMSADLEHVKAHQENGVLRITVPK 128
+ E++ R ER G F R+F +P SAD + + A NGVL I +PK
Sbjct: 55 ETERFSRIERRYGSFHRRFALPDSADADGITAAGRNGVLEIRIPK 99
>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GLA|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
Length = 100
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Query: 35 DWMETPTAHVITLDIPGMKKDDVKIEIEENK-VLRVSGERKSDDYYKEGVQREKWHRAER 93
D E V+ D+PG+ D +IE++ +K +L + GERKS+ + E++ R ER
Sbjct: 8 DIKEEVNHFVLYADLPGI--DPSQIEVQMDKGILSIRGERKSE----SSTETERFSRIER 61
Query: 94 ISGKFWRQFKMPMSADLEHVKAHQENGVLRITVPK 128
G F R+F +P SAD + + A NGVL I +PK
Sbjct: 62 RYGSFHRRFALPDSADADGITAAGRNGVLEIRIPK 96
>pdb|4FEI|A Chain A, Hsp17.7 From Deinococcus Radiodurans
Length = 102
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 34 ADWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAER 93
ADW + T + LD+PG+ + + E+ L VSGER ++ R+ER
Sbjct: 9 ADWRDAGTHLDLLLDVPGVDAGTLALA-EDGGQLTVSGERPGTEHLL---------RSER 58
Query: 94 ISGKFWRQFKMPMSADLEHVKAHQENGVLRITVPKL 129
SG+F R+ P A GVL + KL
Sbjct: 59 PSGRFVRELAFPEPVRPASGVASLAGGVLTVRFEKL 94
>pdb|1SHS|A Chain A, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|B Chain B, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|C Chain C, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|D Chain D, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|E Chain E, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|F Chain F, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|G Chain G, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|H Chain H, Small Heat Shock Protein From Methanococcus Jannaschii
Length = 147
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 97 KFWRQFKMPMSADLEHVKAHQENGVLRITVPKLAEEKKRQPNV 139
+ +R K+P + E+ A ENGVL + +PK K+ N+
Sbjct: 104 EIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINI 146
>pdb|4DMG|A Chain A, Thermus Thermophilus M5c1942 Methyltransferase Rlmo
pdb|4DMG|B Chain B, Thermus Thermophilus M5c1942 Methyltransferase Rlmo
Length = 393
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 9 FGVLEQTTLKIPKRADNHQTLALATADWMETPTAHVI----TL-----DIPGMKKDDVKI 59
GVL+Q L++ R D AL T +E P HV+ TL ++P MK+ V +
Sbjct: 249 LGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVKRPEELPAMKRHLVDL 308
Query: 60 EIEENKVL 67
E ++L
Sbjct: 309 VREALRLL 316
>pdb|4ELD|A Chain A, Crystal Structure Of An Activated Variant Of Small Heat
Shock Protein Hsp16.5
pdb|4ELD|B Chain B, Crystal Structure Of An Activated Variant Of Small Heat
Shock Protein Hsp16.5
Length = 161
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 97 KFWRQFKMPMSADLEHVKAHQENGVLRITVPKLAEEKKRQPNV 139
+ +R K+P + E+ A ENGVL + +PK K+ N+
Sbjct: 118 EIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINI 160
>pdb|1RL1|A Chain A, Solution Structure Of Human Sgt1 Cs Domain
Length = 114
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 35 DWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDY 78
DW +T + VITL I ++K+DV +E E ++ + +DY
Sbjct: 13 DWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDY 56
>pdb|3IZ3|B Chain B, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
pdb|3IZ3|C Chain C, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
pdb|3J17|B Chain B, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
pdb|3J17|C Chain C, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
Length = 1333
Score = 28.9 bits (63), Expect = 1.2, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 5/31 (16%)
Query: 131 EEKKRQPNVINIDEESGTSYGEGTKATKAQT 161
EEK +QP + +S + GEGT T+AQT
Sbjct: 14 EEKHKQPEI-----DSSANNGEGTSGTRAQT 39
>pdb|3CNF|A Chain A, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus
By Cryo-Electron Microscopy
pdb|3CNF|B Chain B, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus
By Cryo-Electron Microscopy
pdb|3IZX|B Chain B, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
pdb|3IZX|C Chain C, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
Length = 1333
Score = 28.9 bits (63), Expect = 1.2, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 5/31 (16%)
Query: 131 EEKKRQPNVINIDEESGTSYGEGTKATKAQT 161
EEK +QP + +S + GEGT T+AQT
Sbjct: 14 EEKHKQPEI-----DSSANNGEGTSGTRAQT 39
>pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|B Chain B, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|C Chain C, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|D Chain D, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
Length = 375
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 5 TGNPFGVLEQTTLKIPKRADNHQTLALAT 33
TGNP+G+ E +P R+ LAT
Sbjct: 298 TGNPYGIAEDIVFSMPCRSKGDGDYELAT 326
>pdb|3BBO|I Chain I, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 223
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 42 AHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGK 97
+H + + IP D +K+++EEN + VSG KS+ R KW E GK
Sbjct: 153 SHPVKMQIP----DSLKVKVEENTRITVSGYDKSEIGQFAATVR-KWRPPEPYKGK 203
>pdb|3AFJ|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Triple Mutant
pdb|3AFJ|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Triple Mutant
Length = 842
Score = 26.6 bits (57), Expect = 6.2, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 96 GKFWRQFKMPMSADLEHVKAHQENGVLRIT 125
G W +P+ ADL+H +A G RIT
Sbjct: 98 GDVWTPSWLPVKADLDHFEARHGLGYSRIT 127
>pdb|3ACS|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase W488f Mutant
pdb|3ACS|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase W488f Mutant
Length = 842
Score = 26.6 bits (57), Expect = 6.2, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 96 GKFWRQFKMPMSADLEHVKAHQENGVLRIT 125
G W +P+ ADL+H +A G RIT
Sbjct: 98 GDVWTPSWLPVKADLDHFEARHGLGYSRIT 127
>pdb|3ACT|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Histidine Mutant
pdb|3ACT|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Histidine Mutant
Length = 842
Score = 26.6 bits (57), Expect = 6.3, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 96 GKFWRQFKMPMSADLEHVKAHQENGVLRIT 125
G W +P+ ADL+H +A G RIT
Sbjct: 98 GDVWTPSWLPVKADLDHFEARHGLGYSRIT 127
>pdb|3H83|A Chain A, 2.06 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3H83|B Chain B, 2.06 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3H83|C Chain C, 2.06 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3H83|D Chain D, 2.06 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3HVU|A Chain A, 1.95 Angstrom Crystal Structure Of Complex Of
Hypoxanthine-Guanine Phosphoribosyltransferase From
Bacillus Anthracis With 2-(N- Morpholino)ethanesulfonic
Acid (Mes)
pdb|3HVU|B Chain B, 1.95 Angstrom Crystal Structure Of Complex Of
Hypoxanthine-Guanine Phosphoribosyltransferase From
Bacillus Anthracis With 2-(N- Morpholino)ethanesulfonic
Acid (Mes)
pdb|3HVU|C Chain C, 1.95 Angstrom Crystal Structure Of Complex Of
Hypoxanthine-Guanine Phosphoribosyltransferase From
Bacillus Anthracis With 2-(N- Morpholino)ethanesulfonic
Acid (Mes)
pdb|3HVU|D Chain D, 1.95 Angstrom Crystal Structure Of Complex Of
Hypoxanthine-Guanine Phosphoribosyltransferase From
Bacillus Anthracis With 2-(N- Morpholino)ethanesulfonic
Acid (Mes)
pdb|3KB8|A Chain A, 2.09 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor' In Complex
With Gmp
pdb|3KB8|B Chain B, 2.09 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor' In Complex
With Gmp
pdb|3KB8|C Chain C, 2.09 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor' In Complex
With Gmp
pdb|3KB8|D Chain D, 2.09 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor' In Complex
With Gmp
Length = 204
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 120 GVLRITVPKLAEEKKRQPNVINIDEESGTSYGEGTKAT 157
GVL+ +P +A+ KR + +D + +SYG T +T
Sbjct: 64 GVLKGAMPFMADLLKRTDTYLEMDFMAVSSYGHSTVST 101
>pdb|2CQS|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Crystallized From Ammonium Sulfate
pdb|2CQS|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Crystallized From Ammonium Sulfate
pdb|2CQT|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Crystallized From SodiumPOTASSIUM
PHOSPHATE
pdb|2CQT|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Crystallized From SodiumPOTASSIUM
PHOSPHATE
pdb|3QFY|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Complexed With Sulfate And Isofagomine
pdb|3QFY|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Complexed With Sulfate And Isofagomine
pdb|3QFZ|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Complexed With Sulfate And
1-Deoxynojirimycin
pdb|3QFZ|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Complexed With Sulfate And
1-Deoxynojirimycin
pdb|3QG0|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Complexed With Phosphate And
1-Deoxynojirimycin
pdb|3QG0|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Complexed With Phosphate And
1-Deoxynojirimycin
Length = 842
Score = 26.6 bits (57), Expect = 6.3, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 96 GKFWRQFKMPMSADLEHVKAHQENGVLRIT 125
G W +P+ ADL+H +A G RIT
Sbjct: 98 GDVWTPSWLPVKADLDHFEARHGLGYSRIT 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,043,894
Number of Sequences: 62578
Number of extensions: 201923
Number of successful extensions: 351
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 330
Number of HSP's gapped (non-prelim): 22
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)