Query 041192
Match_columns 161
No_of_seqs 177 out of 1084
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:40:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041192.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041192hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 100.0 2.4E-30 5.2E-35 187.8 14.7 133 1-146 1-138 (142)
2 PRK10743 heat shock protein Ib 100.0 3.8E-29 8.3E-34 180.9 14.3 104 30-143 33-137 (137)
3 COG0071 IbpA Molecular chapero 100.0 2.5E-28 5.5E-33 178.7 14.1 109 29-143 38-146 (146)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 7.9E-27 1.7E-31 158.2 12.0 92 33-128 1-92 (92)
5 PF00011 HSP20: Hsp20/alpha cr 99.9 1.9E-25 4E-30 153.7 13.5 102 35-143 1-102 (102)
6 cd06471 ACD_LpsHSP_like Group 99.9 2.3E-25 4.9E-30 151.2 11.8 93 32-128 1-93 (93)
7 cd06470 ACD_IbpA-B_like Alpha- 99.9 1.3E-24 2.7E-29 146.9 12.4 89 32-128 1-90 (90)
8 cd06497 ACD_alphaA-crystallin_ 99.9 2.3E-23 5.1E-28 139.6 10.9 82 35-128 4-86 (86)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 1.1E-22 2.4E-27 135.4 10.8 82 35-128 1-83 (83)
10 cd06498 ACD_alphaB-crystallin_ 99.9 2E-22 4.3E-27 134.5 10.7 82 36-129 2-84 (84)
11 cd06479 ACD_HspB7_like Alpha c 99.9 1.5E-22 3.2E-27 134.1 9.4 79 35-128 2-81 (81)
12 cd06476 ACD_HspB2_like Alpha c 99.9 9.1E-22 2E-26 131.0 10.5 81 36-128 2-83 (83)
13 cd06475 ACD_HspB1_like Alpha c 99.9 1.6E-21 3.4E-26 130.7 10.8 82 34-127 3-85 (86)
14 cd06481 ACD_HspB9_like Alpha c 99.9 1.2E-21 2.6E-26 131.5 10.2 83 38-128 4-87 (87)
15 cd06464 ACD_sHsps-like Alpha-c 99.9 2.8E-21 6E-26 128.6 11.4 88 35-128 1-88 (88)
16 cd06482 ACD_HspB10 Alpha cryst 99.9 6.8E-21 1.5E-25 127.6 10.0 80 39-127 6-86 (87)
17 cd06477 ACD_HspB3_Like Alpha c 99.8 1.8E-20 3.9E-25 124.6 10.5 79 37-127 3-82 (83)
18 cd06526 metazoan_ACD Alpha-cry 99.8 1.1E-20 2.5E-25 125.6 9.0 77 40-128 6-83 (83)
19 KOG0710 Molecular chaperone (s 99.8 1.4E-18 3.1E-23 132.8 7.8 114 27-142 80-194 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.7 2.5E-17 5.5E-22 111.1 9.7 81 36-128 10-91 (91)
21 KOG3591 Alpha crystallins [Pos 99.7 1.7E-15 3.7E-20 113.5 12.5 103 32-147 63-166 (173)
22 cd00298 ACD_sHsps_p23-like Thi 99.6 1.4E-14 3E-19 93.2 9.9 80 36-128 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.4 5.7E-12 1.2E-16 82.2 9.0 71 36-131 1-71 (78)
24 PF05455 GvpH: GvpH; InterPro 99.2 3.6E-10 7.7E-15 84.3 9.8 83 27-132 87-171 (177)
25 cd06463 p23_like Proteins cont 99.1 8.3E-10 1.8E-14 72.0 9.2 76 36-131 1-76 (84)
26 cd06466 p23_CS_SGT1_like p23_l 98.9 1.4E-08 3E-13 66.9 7.9 77 35-131 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.6 1.1E-06 2.4E-11 56.6 11.3 77 32-128 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.4 8.2E-06 1.8E-10 56.4 10.2 78 32-130 1-78 (108)
29 PF08190 PIH1: pre-RNA process 98.3 2.8E-06 6.1E-11 69.2 8.8 65 40-127 260-327 (328)
30 cd06489 p23_CS_hSgt1_like p23_ 98.2 1.9E-05 4.2E-10 52.0 8.4 77 35-131 1-77 (84)
31 cd06467 p23_NUDC_like p23_like 98.1 4.3E-05 9.3E-10 50.2 8.8 75 34-131 1-77 (85)
32 cd06488 p23_melusin_like p23_l 98.0 0.00013 2.9E-09 48.5 9.7 80 33-132 2-81 (87)
33 cd06493 p23_NUDCD1_like p23_NU 98.0 0.00011 2.4E-09 48.6 9.2 76 34-132 1-78 (85)
34 cd06468 p23_CacyBP p23_like do 98.0 0.00019 4.1E-09 47.9 10.1 79 33-131 3-85 (92)
35 cd06494 p23_NUDCD2_like p23-li 97.5 0.0014 3E-08 44.4 9.2 78 30-131 4-83 (93)
36 cd00237 p23 p23 binds heat sho 97.4 0.0041 8.8E-08 43.0 10.4 78 32-131 2-79 (106)
37 PLN03088 SGT1, suppressor of 97.1 0.0036 7.7E-08 52.0 8.8 82 31-132 156-237 (356)
38 KOG1309 Suppressor of G2 allel 96.9 0.0043 9.4E-08 46.6 7.0 81 31-131 3-83 (196)
39 cd06490 p23_NCB5OR p23_like do 96.6 0.062 1.4E-06 35.6 10.0 77 34-132 1-81 (87)
40 cd06492 p23_mNUDC_like p23-lik 96.5 0.044 9.5E-07 36.4 8.8 74 35-131 2-79 (87)
41 cd06495 p23_NUDCD3_like p23-li 96.1 0.13 2.9E-06 35.2 9.7 81 30-130 3-86 (102)
42 KOG2265 Nuclear distribution p 91.1 2.4 5.2E-05 31.9 8.3 82 27-131 14-97 (179)
43 PF14913 DPCD: DPCD protein fa 88.9 4.2 9E-05 31.0 8.2 83 26-131 81-171 (194)
44 PF13349 DUF4097: Domain of un 88.9 5.9 0.00013 28.5 9.0 82 32-125 66-147 (166)
45 KOG3158 HSP90 co-chaperone p23 86.9 4 8.6E-05 30.7 6.9 83 28-132 4-86 (180)
46 KOG1667 Zn2+-binding protein M 85.1 5.7 0.00012 31.8 7.3 85 29-132 212-296 (320)
47 cd06477 ACD_HspB3_Like Alpha c 78.5 5.1 0.00011 26.2 4.3 30 42-72 51-82 (83)
48 cd06482 ACD_HspB10 Alpha cryst 76.0 6.8 0.00015 25.9 4.4 34 97-131 9-42 (87)
49 cd06478 ACD_HspB4-5-6 Alpha-cr 74.5 7.5 0.00016 25.2 4.3 32 97-129 8-39 (83)
50 cd06470 ACD_IbpA-B_like Alpha- 73.9 13 0.00029 24.3 5.4 36 96-132 11-46 (90)
51 cd06476 ACD_HspB2_like Alpha c 73.8 6.8 0.00015 25.6 3.9 32 97-129 8-39 (83)
52 cd06471 ACD_LpsHSP_like Group 73.1 5.8 0.00013 26.0 3.5 30 41-71 62-91 (93)
53 cd06497 ACD_alphaA-crystallin_ 72.6 8 0.00017 25.4 4.0 32 97-129 11-42 (86)
54 COG5091 SGT1 Suppressor of G2 72.5 2.1 4.6E-05 34.7 1.4 82 32-132 177-258 (368)
55 cd06464 ACD_sHsps-like Alpha-c 72.0 7.2 0.00016 24.7 3.7 33 39-72 54-87 (88)
56 PF08308 PEGA: PEGA domain; I 72.0 15 0.00031 22.7 5.0 44 32-75 25-69 (71)
57 cd06480 ACD_HspB8_like Alpha-c 71.3 10 0.00022 25.4 4.3 31 41-71 58-89 (91)
58 PRK10743 heat shock protein Ib 70.0 18 0.00039 26.0 5.7 33 97-130 46-78 (137)
59 PF12992 DUF3876: Domain of un 68.3 19 0.0004 24.4 5.1 40 30-70 24-68 (95)
60 PF00011 HSP20: Hsp20/alpha cr 67.4 16 0.00034 24.2 4.7 32 97-129 8-39 (102)
61 cd01759 PLAT_PL PLAT/LH2 domai 67.2 39 0.00086 23.5 7.0 45 97-147 45-90 (113)
62 cd06472 ACD_ScHsp26_like Alpha 67.1 9.4 0.0002 25.0 3.5 31 40-71 59-90 (92)
63 cd06479 ACD_HspB7_like Alpha c 66.7 15 0.00032 23.9 4.3 32 97-129 9-40 (81)
64 cd06498 ACD_alphaB-crystallin_ 66.0 13 0.00029 24.2 4.0 31 97-128 8-38 (84)
65 PF04972 BON: BON domain; Int 66.0 12 0.00026 22.5 3.6 25 50-75 12-36 (64)
66 CHL00140 rpl6 ribosomal protei 65.3 25 0.00055 26.4 5.9 21 54-75 12-32 (178)
67 cd06526 metazoan_ACD Alpha-cry 64.7 16 0.00034 23.5 4.2 34 97-131 8-41 (83)
68 cd06469 p23_DYX1C1_like p23_li 64.7 21 0.00046 22.2 4.7 34 41-75 36-70 (78)
69 KOG3591 Alpha crystallins [Pos 64.3 9.9 0.00021 28.5 3.5 30 46-75 120-150 (173)
70 cd06475 ACD_HspB1_like Alpha c 63.7 16 0.00035 23.8 4.1 33 97-130 11-43 (86)
71 KOG3260 Calcyclin-binding prot 63.1 33 0.00071 26.2 6.0 79 33-131 76-155 (224)
72 cd06481 ACD_HspB9_like Alpha c 62.5 30 0.00065 22.6 5.3 34 97-131 8-41 (87)
73 PRK11597 heat shock chaperone 61.8 28 0.00062 25.2 5.4 33 97-130 44-76 (142)
74 PRK05518 rpl6p 50S ribosomal p 58.9 46 0.001 25.1 6.3 21 54-75 13-33 (180)
75 TIGR03654 L6_bact ribosomal pr 58.0 49 0.0011 24.7 6.3 21 54-75 11-31 (175)
76 TIGR03653 arch_L6P archaeal ri 57.2 56 0.0012 24.4 6.5 21 54-75 7-27 (170)
77 PF01954 DUF104: Protein of un 55.2 18 0.0004 22.2 3.0 32 111-144 3-34 (60)
78 PF00347 Ribosomal_L6: Ribosom 54.0 22 0.00047 22.3 3.4 21 54-75 2-22 (77)
79 COG0071 IbpA Molecular chapero 52.7 36 0.00077 24.4 4.7 34 41-75 100-134 (146)
80 PRK05498 rplF 50S ribosomal pr 51.2 66 0.0014 24.1 6.1 21 54-75 12-32 (178)
81 COG4856 Uncharacterized protei 50.9 30 0.00065 29.3 4.5 63 91-156 189-252 (403)
82 COG0097 RplF Ribosomal protein 50.2 64 0.0014 24.4 5.8 23 52-75 10-32 (178)
83 PRK10568 periplasmic protein; 49.9 43 0.00094 25.5 5.0 25 50-75 73-97 (203)
84 PF12673 DUF3794: Domain of un 49.3 65 0.0014 20.3 7.7 48 57-106 16-63 (87)
85 PTZ00179 60S ribosomal protein 48.7 64 0.0014 24.5 5.7 21 54-75 12-32 (189)
86 cd06467 p23_NUDC_like p23_like 48.0 65 0.0014 20.3 5.0 31 97-127 9-39 (85)
87 PTZ00027 60S ribosomal protein 45.7 77 0.0017 24.1 5.7 22 53-75 12-33 (190)
88 KOG3413 Mitochondrial matrix p 42.4 13 0.00028 27.2 1.0 24 105-128 66-89 (156)
89 PF14814 UB2H: Bifunctional tr 38.8 76 0.0017 20.6 4.2 40 84-123 29-69 (85)
90 cd06494 p23_NUDCD2_like p23-li 37.6 1.2E+02 0.0027 20.1 5.9 32 95-126 14-45 (93)
91 COG4004 Uncharacterized protei 35.8 92 0.002 21.0 4.2 35 34-73 26-60 (96)
92 PRK11198 LysM domain/BON super 35.0 59 0.0013 23.4 3.5 25 50-75 38-62 (147)
93 cd02178 GH16_beta_agarase Beta 33.8 1.7E+02 0.0038 22.9 6.3 44 59-106 60-109 (258)
94 PF15525 DUF4652: Domain of un 33.6 2.2E+02 0.0048 21.9 7.3 82 40-128 98-181 (200)
95 cd00503 Frataxin Frataxin is a 32.8 47 0.001 22.7 2.5 17 111-127 28-44 (105)
96 PF01491 Frataxin_Cyay: Fratax 32.5 57 0.0012 22.4 3.0 18 112-129 31-48 (109)
97 PF14730 DUF4468: Domain of un 32.2 1.5E+02 0.0032 19.4 5.4 16 113-128 70-85 (91)
98 PRK00446 cyaY frataxin-like pr 30.8 48 0.001 22.7 2.3 17 113-129 29-45 (105)
99 TIGR03421 FeS_CyaY iron donor 30.1 48 0.001 22.6 2.2 17 112-128 26-42 (102)
100 PRK13726 conjugal transfer pil 29.9 96 0.0021 23.5 4.0 20 55-75 131-150 (188)
101 PF07873 YabP: YabP family; I 26.6 65 0.0014 19.9 2.2 22 52-74 23-44 (66)
102 KOG3247 Uncharacterized conser 26.6 33 0.00072 29.4 1.1 75 32-131 4-81 (466)
103 cd02175 GH16_lichenase lichena 25.4 2.5E+02 0.0055 21.1 5.8 49 54-107 31-80 (212)
104 PF06964 Alpha-L-AF_C: Alpha-L 24.8 1.4E+02 0.0031 21.8 4.2 29 101-129 148-176 (177)
105 KOG0100 Molecular chaperones G 24.1 3.8E+02 0.0083 23.5 6.9 52 93-147 484-538 (663)
106 TIGR03422 mito_frataxin fratax 24.0 53 0.0011 22.2 1.5 15 114-128 30-44 (97)
107 PF06977 SdiA-regulated: SdiA- 23.5 3.1E+02 0.0068 21.6 6.1 71 42-125 9-81 (248)
108 PF13620 CarboxypepD_reg: Carb 23.4 1.2E+02 0.0025 18.7 3.1 29 41-69 48-77 (82)
109 PF05309 TraE: TraE protein; 23.2 1.4E+02 0.003 22.3 3.9 20 55-75 131-150 (187)
110 PF08845 SymE_toxin: Toxin Sym 22.9 1.3E+02 0.0028 18.2 3.0 23 47-70 33-56 (57)
111 cd08023 GH16_laminarinase_like 22.8 3.5E+02 0.0075 20.6 6.7 54 51-107 34-91 (235)
112 PF14545 DBB: Dof, BCAP, and B 22.3 2.7E+02 0.0059 20.2 5.0 34 39-72 47-83 (142)
113 PF12080 GldM_C: GldM C-termin 21.6 1.2E+02 0.0026 22.7 3.2 39 33-72 6-44 (181)
114 PLN02711 Probable galactinol-- 21.6 2.2E+02 0.0048 26.5 5.3 53 88-143 721-776 (777)
115 PF04583 Baculo_p74: Baculovir 21.1 20 0.00043 28.6 -1.2 20 1-20 119-138 (249)
116 PRK14290 chaperone protein Dna 20.9 4.9E+02 0.011 21.6 9.3 44 99-146 275-318 (365)
117 TIGR02856 spore_yqfC sporulati 20.3 90 0.002 20.5 2.0 45 29-75 17-63 (85)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.97 E-value=2.4e-30 Score=187.82 Aligned_cols=133 Identities=20% Similarity=0.305 Sum_probs=106.8
Q ss_pred CCCcCCCchh----hhhhccccCCcccccCCCCccceeeEEE-cCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEec
Q 041192 1 MFLMTGNPFG----VLEQTTLKIPKRADNHQTLALATADWME-TPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKS 75 (161)
Q Consensus 1 M~l~~~dpf~----~l~~~~~~~~~~~~~~~~~~~p~~di~e-~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~ 75 (161)
|..+..+||. .++++...+.+.. .....|++||++ ++++|+|.++|||++++||+|++++ +.|+|+|++..
T Consensus 1 ~~~~~~~~~~~~~~~~d~l~~~~~~~~---~~~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~-~~LtI~ge~~~ 76 (142)
T PRK11597 1 MRNYDLSPLLRQWIGFDKLANALQNAG---ESQSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEG-TRLTVKGTPEQ 76 (142)
T ss_pred CCccccchhhcccccHHHHHHHhcccC---ccCCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEEC-CEEEEEEEEcc
Confidence 3344444533 5665554444433 345679999998 5789999999999999999999999 99999999765
Q ss_pred CCccccccccccEEEEeeeeeEEEEEEECCCCcccCCeeEEEeCCEEEEEEeCcCccccCCCeEEEecCCC
Q 041192 76 DDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLEHVKAHQENGVLRITVPKLAEEKKRQPNVINIDEES 146 (161)
Q Consensus 76 ~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~nGiL~I~~pK~~~~~~~~~~~I~I~~~~ 146 (161)
+ .++.+|+++|+.+|.|+|+|.||.+||.+ +|+|+||||+|+|||..++ ..++++|+|+...
T Consensus 77 ----~--~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~~nGVL~I~lPK~~~~-~~~~rkI~I~~~~ 138 (142)
T PRK11597 77 ----P--EKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATFVNGLLHIDLIRNEPE-AIAPQRIAISERP 138 (142)
T ss_pred ----c--cCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEEcCCEEEEEEeccCcc-ccCCcEEEECCcc
Confidence 2 35678999999999999999999999998 6999999999999997543 3468999998653
No 2
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.96 E-value=3.8e-29 Score=180.86 Aligned_cols=104 Identities=17% Similarity=0.330 Sum_probs=92.1
Q ss_pred ccceeeEEE-cCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCc
Q 041192 30 ALATADWME-TPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSA 108 (161)
Q Consensus 30 ~~p~~di~e-~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~v 108 (161)
..|++||++ ++++|.|.++|||++++||+|++.+ +.|+|+|++.. + .+..+|+++||.+|.|+|+|.||.+|
T Consensus 33 ~~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~-~~LtI~ge~~~----~--~~~~~~~~~Er~~g~F~R~~~LP~~V 105 (137)
T PRK10743 33 GYPPYNVELVDENHYRIAIAVAGFAESELEITAQD-NLLVVKGAHAD----E--QKERTYLYQGIAERNFERKFQLAENI 105 (137)
T ss_pred CCCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEECc----c--ccCCcEEEEEEECCEEEEEEECCCCc
Confidence 349999994 8999999999999999999999999 89999999766 2 25567999999999999999999999
Q ss_pred ccCCeeEEEeCCEEEEEEeCcCccccCCCeEEEec
Q 041192 109 DLEHVKAHQENGVLRITVPKLAEEKKRQPNVINID 143 (161)
Q Consensus 109 d~~~i~A~~~nGiL~I~~pK~~~~~~~~~~~I~I~ 143 (161)
|.++ |+|+||||+|++||..++ ..++|+|+|+
T Consensus 106 d~~~--A~~~dGVL~I~lPK~~~~-~~~~r~I~I~ 137 (137)
T PRK10743 106 HVRG--ANLVNGLLYIDLERVIPE-AKKPRRIEIN 137 (137)
T ss_pred ccCc--CEEeCCEEEEEEeCCCcc-ccCCeEEeeC
Confidence 9994 999999999999997543 3468999985
No 3
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.5e-28 Score=178.67 Aligned_cols=109 Identities=36% Similarity=0.614 Sum_probs=101.3
Q ss_pred CccceeeEEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCc
Q 041192 29 LALATADWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSA 108 (161)
Q Consensus 29 ~~~p~~di~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~v 108 (161)
.+.|++||+++++.|+|.++|||++++||+|++.+ +.|+|+|++.. +...+...++++|+.+|.|+|+|.||..|
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~-~~l~I~g~~~~----~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v 112 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVEG-NTLTIRGEREE----EEEEEEEGYLRRERAYGEFERTFRLPEKV 112 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEEC-CEEEEEEEecc----cccccCCceEEEEEEeeeEEEEEECcccc
Confidence 46899999999999999999999999999999999 89999999987 56778899999999999999999999999
Q ss_pred ccCCeeEEEeCCEEEEEEeCcCccccCCCeEEEec
Q 041192 109 DLEHVKAHQENGVLRITVPKLAEEKKRQPNVINID 143 (161)
Q Consensus 109 d~~~i~A~~~nGiL~I~~pK~~~~~~~~~~~I~I~ 143 (161)
+.+.++|+|+||+|+|+|||..+.+ .++++|+|+
T Consensus 113 ~~~~~~A~~~nGvL~I~lpk~~~~~-~~~~~i~I~ 146 (146)
T COG0071 113 DPEVIKAKYKNGLLTVTLPKAEPEE-KKPKRIEIE 146 (146)
T ss_pred cccceeeEeeCcEEEEEEecccccc-ccCceeecC
Confidence 9999999999999999999999873 457888874
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.95 E-value=7.9e-27 Score=158.23 Aligned_cols=92 Identities=57% Similarity=1.004 Sum_probs=85.3
Q ss_pred eeeEEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccCC
Q 041192 33 TADWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLEH 112 (161)
Q Consensus 33 ~~di~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~ 112 (161)
++||+|++++|+|.++|||++++||+|++.+++.|+|+|++.. +.......++++|+.+|.|.|+|.||.++|.+.
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~----~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~ 76 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKK----EEEKKGDDWHRVERSSGRFVRRFRLPENADADE 76 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecc----cccccCCCEEEEEEeccEEEEEEECCCCCCHHH
Confidence 4799999999999999999999999999987468999999876 445567889999999999999999999999999
Q ss_pred eeEEEeCCEEEEEEeC
Q 041192 113 VKAHQENGVLRITVPK 128 (161)
Q Consensus 113 i~A~~~nGiL~I~~pK 128 (161)
|+|+|+||+|+|++||
T Consensus 77 i~A~~~nGvL~I~lPK 92 (92)
T cd06472 77 VKAFLENGVLTVTVPK 92 (92)
T ss_pred CEEEEECCEEEEEecC
Confidence 9999999999999998
No 5
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.94 E-value=1.9e-25 Score=153.71 Aligned_cols=102 Identities=39% Similarity=0.681 Sum_probs=86.3
Q ss_pred eEEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccCCee
Q 041192 35 DWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLEHVK 114 (161)
Q Consensus 35 di~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~ 114 (161)
||.+++++|.|.++|||+.+++|+|++.+ +.|.|+|++.. ...+..++..|+.++.|.|+|.||.++|.++|+
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~-~~L~I~g~~~~------~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~ 73 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDD-NKLVISGKRKE------EEEDDRYYRSERRYGSFERSIRLPEDVDPDKIK 73 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEET-TEEEEEEEEEG------EECTTCEEEE-S-SEEEEEEEE-STTB-GGG-E
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEec-Cccceeceeee------eeeeeeeeecccccceEEEEEcCCCcCCcceEE
Confidence 78999999999999999999999999999 89999999983 345567888999999999999999999999999
Q ss_pred EEEeCCEEEEEEeCcCccccCCCeEEEec
Q 041192 115 AHQENGVLRITVPKLAEEKKRQPNVINID 143 (161)
Q Consensus 115 A~~~nGiL~I~~pK~~~~~~~~~~~I~I~ 143 (161)
|.|+||+|+|++||....++..+++|+|+
T Consensus 74 a~~~~GvL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 74 ASYENGVLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp EEETTSEEEEEEEBSSSCTTSSSCEE-ET
T ss_pred EEecCCEEEEEEEccccccCCCCeEEEeC
Confidence 99999999999999998866678999985
No 6
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.93 E-value=2.3e-25 Score=151.20 Aligned_cols=93 Identities=38% Similarity=0.649 Sum_probs=83.5
Q ss_pred ceeeEEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccC
Q 041192 32 ATADWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLE 111 (161)
Q Consensus 32 p~~di~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~ 111 (161)
|++||+++++.|+|.++|||++++||+|++.+ +.|+|+|++.... +.......++++|+.+|.|.|+|.|| +++.+
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~-~~L~I~g~~~~~~--~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~ 76 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKD-GYLTISAKRDESK--DEKDKKGNYIRRERYYGSFSRSFYLP-NVDEE 76 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcccc--ccccccCCEEEEeeeccEEEEEEECC-CCCHH
Confidence 47999999999999999999999999999999 8999999997621 12233457999999999999999999 79999
Q ss_pred CeeEEEeCCEEEEEEeC
Q 041192 112 HVKAHQENGVLRITVPK 128 (161)
Q Consensus 112 ~i~A~~~nGiL~I~~pK 128 (161)
.++|+|+||+|+|++||
T Consensus 77 ~i~A~~~dGvL~I~lPK 93 (93)
T cd06471 77 EIKAKYENGVLKITLPK 93 (93)
T ss_pred HCEEEEECCEEEEEEcC
Confidence 99999999999999998
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.92 E-value=1.3e-24 Score=146.91 Aligned_cols=89 Identities=26% Similarity=0.437 Sum_probs=81.7
Q ss_pred ceeeEEEcC-CEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCccc
Q 041192 32 ATADWMETP-TAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADL 110 (161)
Q Consensus 32 p~~di~e~~-~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~ 110 (161)
|++||++++ +.|+|.++|||+++++|+|.+.+ +.|+|+|++.. ... ...+|+++|+.+|.|.|+|.||.++|.
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~-~~L~I~g~~~~----~~~-~~~~~~~~e~~~g~f~R~~~LP~~vd~ 74 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVEN-NQLTVTGKKAD----EEN-EEREYLHRGIAKRAFERSFNLADHVKV 74 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcc----ccc-CCCcEEEEEEeceEEEEEEECCCCceE
Confidence 789999975 99999999999999999999999 89999999987 333 677899999999999999999999987
Q ss_pred CCeeEEEeCCEEEEEEeC
Q 041192 111 EHVKAHQENGVLRITVPK 128 (161)
Q Consensus 111 ~~i~A~~~nGiL~I~~pK 128 (161)
. +|+|+||+|+|+||+
T Consensus 75 ~--~A~~~~GvL~I~l~~ 90 (90)
T cd06470 75 K--GAELENGLLTIDLER 90 (90)
T ss_pred C--eeEEeCCEEEEEEEC
Confidence 5 899999999999985
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.90 E-value=2.3e-23 Score=139.58 Aligned_cols=82 Identities=17% Similarity=0.426 Sum_probs=73.5
Q ss_pred eEEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccCCee
Q 041192 35 DWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLEHVK 114 (161)
Q Consensus 35 di~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~ 114 (161)
+|.+++++|.|.++||||+++||+|++.+ +.|+|+|++.. . .+...|+++| |.|+|.||.+||.++|+
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~----~--~~~~~~~~~e-----f~R~~~LP~~Vd~~~i~ 71 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLD-DYVEIHGKHSE----R--QDDHGYISRE-----FHRRYRLPSNVDQSAIT 71 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcc----e--eCCCCEEEEE-----EEEEEECCCCCChHHeE
Confidence 68999999999999999999999999999 89999998754 2 2344566654 99999999999999999
Q ss_pred EEE-eCCEEEEEEeC
Q 041192 115 AHQ-ENGVLRITVPK 128 (161)
Q Consensus 115 A~~-~nGiL~I~~pK 128 (161)
|+| +||+|+|++||
T Consensus 72 A~~~~dGvL~I~~PK 86 (86)
T cd06497 72 CSLSADGMLTFSGPK 86 (86)
T ss_pred EEeCCCCEEEEEecC
Confidence 999 89999999998
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.89 E-value=1.1e-22 Score=135.44 Aligned_cols=82 Identities=16% Similarity=0.428 Sum_probs=72.1
Q ss_pred eEEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccCCee
Q 041192 35 DWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLEHVK 114 (161)
Q Consensus 35 di~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~ 114 (161)
+|.+++++|.|.++||||+++||+|++.+ +.|+|+|++.. .. ....|+++| |.|+|.||.+||.+.|+
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~----~~--~~~~~~~~e-----f~R~~~LP~~vd~~~i~ 68 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLG-DFVEIHGKHEE----RQ--DEHGFISRE-----FHRRYRLPPGVDPAAIT 68 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEce----Ec--CCCCEEEEE-----EEEEEECCCCcChHHeE
Confidence 36789999999999999999999999999 89999998754 22 234566554 99999999999999999
Q ss_pred EEE-eCCEEEEEEeC
Q 041192 115 AHQ-ENGVLRITVPK 128 (161)
Q Consensus 115 A~~-~nGiL~I~~pK 128 (161)
|+| +||+|+|++||
T Consensus 69 A~~~~dGvL~I~~PK 83 (83)
T cd06478 69 SSLSADGVLTISGPR 83 (83)
T ss_pred EEECCCCEEEEEecC
Confidence 999 69999999998
No 10
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.89 E-value=2e-22 Score=134.49 Aligned_cols=82 Identities=15% Similarity=0.400 Sum_probs=71.9
Q ss_pred EEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccCCeeE
Q 041192 36 WMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLEHVKA 115 (161)
Q Consensus 36 i~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A 115 (161)
+..++++|.|.++||||+++||+|++.+ +.|+|+|++.. +. +...|+++ .|.|+|.||.+||.++|+|
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~----~~--~~~~~~~~-----eF~R~~~LP~~vd~~~i~A 69 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLG-DFIEIHGKHEE----RQ--DEHGFISR-----EFQRKYRIPADVDPLTITS 69 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcc----ee--CCCCEEEE-----EEEEEEECCCCCChHHcEE
Confidence 5778999999999999999999999999 89999998755 22 33456543 5999999999999999999
Q ss_pred EEe-CCEEEEEEeCc
Q 041192 116 HQE-NGVLRITVPKL 129 (161)
Q Consensus 116 ~~~-nGiL~I~~pK~ 129 (161)
+|. ||+|+|++||+
T Consensus 70 ~~~~dGvL~I~lPk~ 84 (84)
T cd06498 70 SLSPDGVLTVCGPRK 84 (84)
T ss_pred EeCCCCEEEEEEeCC
Confidence 995 99999999985
No 11
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.88 E-value=1.5e-22 Score=134.10 Aligned_cols=79 Identities=15% Similarity=0.317 Sum_probs=71.8
Q ss_pred eEEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccCCee
Q 041192 35 DWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLEHVK 114 (161)
Q Consensus 35 di~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~ 114 (161)
+|.|+++.|.|.++||||+++||+|++.+ +.|+|+|+++. +. +..+|+|.|+|.||.+||++.|+
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~-~~L~I~ger~~----~~----------~~~~g~F~R~~~LP~~vd~e~v~ 66 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSN-NQIEVHAEKLA----SD----------GTVMNTFTHKCQLPEDVDPTSVS 66 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEec----cC----------CCEEEEEEEEEECCCCcCHHHeE
Confidence 68899999999999999999999999999 89999999866 22 12478999999999999999999
Q ss_pred EEE-eCCEEEEEEeC
Q 041192 115 AHQ-ENGVLRITVPK 128 (161)
Q Consensus 115 A~~-~nGiL~I~~pK 128 (161)
|+| +||+|+|++++
T Consensus 67 A~l~~~GvL~I~~~~ 81 (81)
T cd06479 67 SSLGEDGTLTIKARR 81 (81)
T ss_pred EEecCCCEEEEEecC
Confidence 997 99999999985
No 12
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.87 E-value=9.1e-22 Score=130.96 Aligned_cols=81 Identities=22% Similarity=0.390 Sum_probs=69.8
Q ss_pred EEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccCCeeE
Q 041192 36 WMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLEHVKA 115 (161)
Q Consensus 36 i~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A 115 (161)
+..++++|.|.++||||+++||+|++.+ +.|+|+|++.. .. ....+++ +.|+|+|.||.+||.+.|+|
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~----~~--~~~~~~~-----~eF~R~~~LP~~vd~~~v~A 69 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVD-NLLEVSARHPQ----RM--DRHGFVS-----REFTRTYILPMDVDPLLVRA 69 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEcc----ee--cCCCEEE-----EEEEEEEECCCCCChhhEEE
Confidence 4557899999999999999999999999 89999999754 22 2333544 45999999999999999999
Q ss_pred EEe-CCEEEEEEeC
Q 041192 116 HQE-NGVLRITVPK 128 (161)
Q Consensus 116 ~~~-nGiL~I~~pK 128 (161)
+|. ||+|+|++||
T Consensus 70 ~~~~dGvL~I~~Pr 83 (83)
T cd06476 70 SLSHDGILCIQAPR 83 (83)
T ss_pred EecCCCEEEEEecC
Confidence 995 9999999997
No 13
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.87 E-value=1.6e-21 Score=130.69 Aligned_cols=82 Identities=18% Similarity=0.441 Sum_probs=72.1
Q ss_pred eeEEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccCCe
Q 041192 34 ADWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLEHV 113 (161)
Q Consensus 34 ~di~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i 113 (161)
.+|+++++.|.|.++|||+++++|+|++.+ +.|+|+|++.. +. ....+. .++|+|+|.||.+||.++|
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~----~~--~~~~~~-----~~~f~R~f~LP~~vd~~~v 70 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKD-GVVEITGKHEE----KQ--DEHGFV-----SRCFTRKYTLPPGVDPTAV 70 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEEC-CEEEEEEEECc----Cc--CCCCEE-----EEEEEEEEECCCCCCHHHc
Confidence 589999999999999999999999999999 89999999865 22 223333 3489999999999999999
Q ss_pred eEEEe-CCEEEEEEe
Q 041192 114 KAHQE-NGVLRITVP 127 (161)
Q Consensus 114 ~A~~~-nGiL~I~~p 127 (161)
+|.|. ||+|+|++|
T Consensus 71 ~A~~~~dGvL~I~lP 85 (86)
T cd06475 71 TSSLSPDGILTVEAP 85 (86)
T ss_pred EEEECCCCeEEEEec
Confidence 99997 999999998
No 14
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.87 E-value=1.2e-21 Score=131.52 Aligned_cols=83 Identities=23% Similarity=0.451 Sum_probs=72.3
Q ss_pred EcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccCCeeEEE
Q 041192 38 ETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLEHVKAHQ 117 (161)
Q Consensus 38 e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~ 117 (161)
+..+.|.|.++||||+++||+|++.+ +.|+|+|++.. +...+...|. +.+|.|.|+|.||.+||.+.|+|.|
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~----~~~~~~~~~~---~~~~~F~R~~~LP~~Vd~~~i~A~~ 75 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDG-RKLVVTGKREK----KNEDEKGSFS---YEYQEFVREAQLPEHVDPEAVTCSL 75 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEEC-CEEEEEEEEee----ecccCCCcEE---EEeeEEEEEEECCCCcChHHeEEEe
Confidence 45689999999999999999999999 99999999876 3333444554 3579999999999999999999999
Q ss_pred -eCCEEEEEEeC
Q 041192 118 -ENGVLRITVPK 128 (161)
Q Consensus 118 -~nGiL~I~~pK 128 (161)
+||+|+|++|+
T Consensus 76 ~~dGvL~I~~P~ 87 (87)
T cd06481 76 SPSGHLHIRAPR 87 (87)
T ss_pred CCCceEEEEcCC
Confidence 99999999995
No 15
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.87 E-value=2.8e-21 Score=128.63 Aligned_cols=88 Identities=47% Similarity=0.768 Sum_probs=80.5
Q ss_pred eEEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccCCee
Q 041192 35 DWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLEHVK 114 (161)
Q Consensus 35 di~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~ 114 (161)
++.+++++|+|.++|||+++++|+|++.+ +.|.|+|++.. ...... .+...++..+.|.|+|.||..+|.+.++
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~-~~l~I~g~~~~----~~~~~~-~~~~~~~~~~~f~r~~~LP~~vd~~~i~ 74 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVED-GVLTISGEREE----EEEEEE-NYLRRERSYGSFSRSFRLPEDVDPDKIK 74 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEec----ccccCC-cEEEEEEeCcEEEEEEECCCCcCHHHcE
Confidence 47889999999999999999999999999 99999999987 233322 7888999999999999999999999999
Q ss_pred EEEeCCEEEEEEeC
Q 041192 115 AHQENGVLRITVPK 128 (161)
Q Consensus 115 A~~~nGiL~I~~pK 128 (161)
|.|.||+|+|++||
T Consensus 75 a~~~~G~L~I~~pk 88 (88)
T cd06464 75 ASLENGVLTITLPK 88 (88)
T ss_pred EEEeCCEEEEEEcC
Confidence 99999999999997
No 16
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.85 E-value=6.8e-21 Score=127.64 Aligned_cols=80 Identities=21% Similarity=0.388 Sum_probs=69.6
Q ss_pred cCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccCCeeEEEe
Q 041192 39 TPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLEHVKAHQE 118 (161)
Q Consensus 39 ~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~ 118 (161)
+++.|+|.++|||++++||+|++.+ +.|+|+|++.. +..... ..|+.+|.|.|+|.||.+||.++|+|+|+
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~-~~L~I~ger~~----~~e~~~----~~er~~g~F~R~f~LP~~Vd~d~i~A~~~ 76 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKD-GKVQVSAEREN----RYDCLG----SKKYSYMNICKEFSLPPGVDEKDVTYSYG 76 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEec----ccccCC----ccEEEEEEEEEEEECCCCcChHHcEEEEc
Confidence 4689999999999999999999999 99999999876 222111 24788999999999999999999999997
Q ss_pred CC-EEEEEEe
Q 041192 119 NG-VLRITVP 127 (161)
Q Consensus 119 nG-iL~I~~p 127 (161)
|| +|+|.-|
T Consensus 77 ~~~~l~i~~~ 86 (87)
T cd06482 77 LGSVVKIETP 86 (87)
T ss_pred CCCEEEEeeC
Confidence 76 9999876
No 17
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.84 E-value=1.8e-20 Score=124.61 Aligned_cols=79 Identities=22% Similarity=0.373 Sum_probs=68.3
Q ss_pred EEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccCCeeEE
Q 041192 37 METPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLEHVKAH 116 (161)
Q Consensus 37 ~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~ 116 (161)
.+++++|.|.++||||+++||+|++.+ +.|+|+|++.. +. ....+. .++|.|+|.||.+|+.+.|+|+
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~ge~~~----~~--~~~~~~-----~r~F~R~~~LP~~Vd~~~v~A~ 70 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFE-GWLLIKGQHGV----RM--DEHGFI-----SRSFTRQYQLPDGVEHKDLSAM 70 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEcc----cc--CCCCEE-----EEEEEEEEECCCCcchheEEEE
Confidence 367899999999999999999999999 99999999876 22 223343 2389999999999999999999
Q ss_pred E-eCCEEEEEEe
Q 041192 117 Q-ENGVLRITVP 127 (161)
Q Consensus 117 ~-~nGiL~I~~p 127 (161)
| +||+|+|..|
T Consensus 71 ~~~dGvL~I~~~ 82 (83)
T cd06477 71 LCHDGILVVETK 82 (83)
T ss_pred EcCCCEEEEEec
Confidence 8 8999999875
No 18
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.84 E-value=1.1e-20 Score=125.65 Aligned_cols=77 Identities=29% Similarity=0.575 Sum_probs=67.9
Q ss_pred CCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccCCeeEEEeC
Q 041192 40 PTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLEHVKAHQEN 119 (161)
Q Consensus 40 ~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~n 119 (161)
++.|.|.++||||+++||+|++.+ +.|+|+|++.. ... .. ++.++.|.|+|.||.+||.+.++|+|.|
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~-~~L~I~g~~~~----~~~--~~-----~~~~~~f~r~~~LP~~vd~~~i~A~~~~ 73 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSD-NKLVVEGKHEE----RED--EH-----GYVSREFTRRYQLPEGVDPDSVTSSLSS 73 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEEC-CEEEEEEEEee----ecc--CC-----CEEEEEEEEEEECCCCCChHHeEEEeCC
Confidence 469999999999999999999999 99999999877 221 12 2346789999999999999999999998
Q ss_pred -CEEEEEEeC
Q 041192 120 -GVLRITVPK 128 (161)
Q Consensus 120 -GiL~I~~pK 128 (161)
|+|+|++||
T Consensus 74 ~GvL~I~~Pk 83 (83)
T cd06526 74 DGVLTIEAPK 83 (83)
T ss_pred CcEEEEEecC
Confidence 999999997
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.4e-18 Score=132.76 Aligned_cols=114 Identities=45% Similarity=0.747 Sum_probs=95.5
Q ss_pred CCCccceeeEEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCC
Q 041192 27 QTLALATADWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPM 106 (161)
Q Consensus 27 ~~~~~p~~di~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~ 106 (161)
...+.++.+|.+..+.|.+.++|||+.+++|+|+++++++|.|+|++.... +.......|+..|+.+|.|.|.|.||+
T Consensus 80 ~~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~--e~~~~~~~~~~~E~~~g~F~r~~~lPe 157 (196)
T KOG0710|consen 80 KSEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEE--EESGSGKKWKRVERKLGKFKRRFELPE 157 (196)
T ss_pred cccccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEeccccccc--ccccCCccceeehhcccceEeeecCCc
Confidence 445557888999999999999999999999999999955899999998721 122366788999999999999999999
Q ss_pred CcccCCeeEEEeCCEEEEEEeCcCcc-ccCCCeEEEe
Q 041192 107 SADLEHVKAHQENGVLRITVPKLAEE-KKRQPNVINI 142 (161)
Q Consensus 107 ~vd~~~i~A~~~nGiL~I~~pK~~~~-~~~~~~~I~I 142 (161)
+++.+.|+|.|+||+|+|++||..+. +....+.|.|
T Consensus 158 nv~~d~ikA~~~nGVL~VvvpK~~~~~~~~~v~~i~i 194 (196)
T KOG0710|consen 158 NVDVDEIKAEMENGVLTVVVPKLEPLLKKPKVRQIAI 194 (196)
T ss_pred cccHHHHHHHhhCCeEEEEEecccccccCCccceeec
Confidence 99999999999999999999999984 2233444444
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.74 E-value=2.5e-17 Score=111.08 Aligned_cols=81 Identities=17% Similarity=0.329 Sum_probs=70.2
Q ss_pred EEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccCCeeE
Q 041192 36 WMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLEHVKA 115 (161)
Q Consensus 36 i~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A 115 (161)
+..+++.|.|.+++.||+++||+|++.+ +.|+|+|++.. +. . ...+. .+.|.|+|.||.+||.+.|+|
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv~~-~~L~V~Gkh~~----~~-~-e~g~~-----~r~F~R~~~LP~~Vd~~~v~s 77 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVKTKD-GFVEVSGKHEE----QQ-K-EGGIV-----SKNFTKKIQLPPEVDPVTVFA 77 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEEEEC-CEEEEEEEECc----cc-C-CCCEE-----EEEEEEEEECCCCCCchhEEE
Confidence 4567889999999999999999999999 99999999887 22 2 22343 368999999999999999999
Q ss_pred EEe-CCEEEEEEeC
Q 041192 116 HQE-NGVLRITVPK 128 (161)
Q Consensus 116 ~~~-nGiL~I~~pK 128 (161)
.+. ||+|+|.+|.
T Consensus 78 ~l~~dGvL~IeaP~ 91 (91)
T cd06480 78 SLSPEGLLIIEAPQ 91 (91)
T ss_pred EeCCCCeEEEEcCC
Confidence 997 9999999883
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.7e-15 Score=113.46 Aligned_cols=103 Identities=19% Similarity=0.403 Sum_probs=89.4
Q ss_pred ceeeEEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccC
Q 041192 32 ATADWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLE 111 (161)
Q Consensus 32 p~~di~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~ 111 (161)
...++..+.+.|.|.+++..|.+++|+|.+.| +.|.|.|++.. ..++..+..+ +|.|.|.||.+||++
T Consensus 63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~-~~l~V~gkHee------r~d~~G~v~R-----~F~R~y~LP~~vdp~ 130 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVHQFKPEELKVKTDD-NTLEVEGKHEE------KEDEHGYVSR-----SFVRKYLLPEDVDPT 130 (173)
T ss_pred cccccccCCCcEEEEEEcccCcccceEEEeCC-CEEEEEeeecc------ccCCCCeEEE-----EEEEEecCCCCCChh
Confidence 46778899999999999999999999999999 89999999877 2244555543 699999999999999
Q ss_pred CeeEEE-eCCEEEEEEeCcCccccCCCeEEEecCCCC
Q 041192 112 HVKAHQ-ENGVLRITVPKLAEEKKRQPNVINIDEESG 147 (161)
Q Consensus 112 ~i~A~~-~nGiL~I~~pK~~~~~~~~~~~I~I~~~~~ 147 (161)
.|++.+ .||+|+|..||...... ..|.|+|+..+.
T Consensus 131 ~V~S~LS~dGvLtI~ap~~~~~~~-~er~ipI~~~~~ 166 (173)
T KOG3591|consen 131 SVTSTLSSDGVLTIEAPKPPPKQD-NERSIPIEQVGP 166 (173)
T ss_pred heEEeeCCCceEEEEccCCCCcCc-cceEEeEeecCc
Confidence 999999 79999999999987633 578999988766
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.60 E-value=1.4e-14 Score=93.17 Aligned_cols=80 Identities=49% Similarity=0.856 Sum_probs=71.0
Q ss_pred EEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccCCeeE
Q 041192 36 WMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLEHVKA 115 (161)
Q Consensus 36 i~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A 115 (161)
|.++++.|.|.+++||+.+++|.|.+.+ +.|.|+|+.... .. .+...+.|.+.+.||..++++.++|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~-~~l~v~~~~~~~----~~--------~~~~~~~~~~~~~L~~~i~~~~~~~ 67 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKREEE----EE--------RERSYGEFERSFELPEDVDPEKSKA 67 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcCC----Cc--------ceEeeeeEEEEEECCCCcCHHHCEE
Confidence 4678899999999999999999999999 999999998761 11 3345678999999999999999999
Q ss_pred EEeCCEEEEEEeC
Q 041192 116 HQENGVLRITVPK 128 (161)
Q Consensus 116 ~~~nGiL~I~~pK 128 (161)
.+.+|+|+|.+||
T Consensus 68 ~~~~~~l~i~l~K 80 (80)
T cd00298 68 SLENGVLEITLPK 80 (80)
T ss_pred EEECCEEEEEEcC
Confidence 9999999999997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.37 E-value=5.7e-12 Score=82.24 Aligned_cols=71 Identities=25% Similarity=0.346 Sum_probs=64.6
Q ss_pred EEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccCCeeE
Q 041192 36 WMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLEHVKA 115 (161)
Q Consensus 36 i~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A 115 (161)
|.++++.+.|.+.+||+++++++|.+++ +.|.|++ . .|.+.+.||..||++..+|
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~-~~l~i~~---~---------------------~~~~~~~l~~~I~~e~~~~ 55 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSD-LYLKVNF---P---------------------PYLFELDLAAPIDDEKSSA 55 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEec-CEEEEcC---C---------------------CEEEEEeCcccccccccEE
Confidence 4678899999999999999999999999 8898875 2 3888999999999999999
Q ss_pred EEeCCEEEEEEeCcCc
Q 041192 116 HQENGVLRITVPKLAE 131 (161)
Q Consensus 116 ~~~nGiL~I~~pK~~~ 131 (161)
++.+|.|.|+|+|..+
T Consensus 56 ~~~~~~l~i~L~K~~~ 71 (78)
T cd06469 56 KIGNGVLVFTLVKKEP 71 (78)
T ss_pred EEeCCEEEEEEEeCCC
Confidence 9999999999999864
No 24
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.16 E-value=3.6e-10 Score=84.27 Aligned_cols=83 Identities=22% Similarity=0.379 Sum_probs=65.4
Q ss_pred CCCccceeeEEEcCC-EEEEEEEcCCCCCCC-eEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEEC
Q 041192 27 QTLALATADWMETPT-AHVITLDIPGMKKDD-VKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKM 104 (161)
Q Consensus 27 ~~~~~p~~di~e~~~-~y~i~v~LPG~~~~d-i~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~L 104 (161)
.....+++++.+.++ .++|.++|||+++++ |+|.+.. +.+.|...... .+.+++.|
T Consensus 87 ~~~~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~-d~~~L~i~~~~---------------------~~~krv~L 144 (177)
T PF05455_consen 87 EDEESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDD-DEGALTIRVGE---------------------KYLKRVAL 144 (177)
T ss_pred CCcceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeec-CCceEEEecCC---------------------ceEeeEec
Confidence 344568899999887 689999999999888 9999975 44444443333 36689999
Q ss_pred CCCcccCCeeEEEeCCEEEEEEeCcCcc
Q 041192 105 PMSADLEHVKAHQENGVLRITVPKLAEE 132 (161)
Q Consensus 105 P~~vd~~~i~A~~~nGiL~I~~pK~~~~ 132 (161)
|.. +++.++|.|+||||+|.|-+..+.
T Consensus 145 ~~~-~~e~~~~t~nNgILEIri~~~~~~ 171 (177)
T PF05455_consen 145 PWP-DPEITSATFNNGILEIRIRRTEES 171 (177)
T ss_pred CCC-ccceeeEEEeCceEEEEEeecCCC
Confidence 976 688889999999999999887654
No 25
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.11 E-value=8.3e-10 Score=72.03 Aligned_cols=76 Identities=26% Similarity=0.307 Sum_probs=66.9
Q ss_pred EEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccCCeeE
Q 041192 36 WMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLEHVKA 115 (161)
Q Consensus 36 i~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A 115 (161)
|.++++.+.|.+.+||..+++++|.+.+ +.|.|++.... .+.|...+.|+..|+++..++
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~-~~l~i~~~~~~-------------------~~~~~~~~~L~~~I~~~~s~~ 60 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTP-KSLTVSVKGGG-------------------GKEYLLEGELFGPIDPEESKW 60 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEec-CEEEEEeeCCC-------------------CCceEEeeEccCccchhhcEE
Confidence 3578899999999999999999999999 89999976431 125778899999999999999
Q ss_pred EEeCCEEEEEEeCcCc
Q 041192 116 HQENGVLRITVPKLAE 131 (161)
Q Consensus 116 ~~~nGiL~I~~pK~~~ 131 (161)
++.+|.|.|+|+|..+
T Consensus 61 ~~~~~~l~i~L~K~~~ 76 (84)
T cd06463 61 TVEDRKIEITLKKKEP 76 (84)
T ss_pred EEeCCEEEEEEEECCC
Confidence 9999999999999876
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.88 E-value=1.4e-08 Score=66.86 Aligned_cols=77 Identities=26% Similarity=0.324 Sum_probs=67.4
Q ss_pred eEEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccCCee
Q 041192 35 DWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLEHVK 114 (161)
Q Consensus 35 di~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~ 114 (161)
||+++++.+.|.+.+||+.++++.|.+++ +.|.|++.... .+.|...+.|+..|+++..+
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~-~~l~i~~~~~~-------------------~~~~~~~~~L~~~I~~~~s~ 60 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNE-QSLSVSIILPG-------------------GSEYQLELDLFGPIDPEQSK 60 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEec-CEEEEEEECCC-------------------CCeEEEecccccccCchhcE
Confidence 57889999999999999999999999999 88999866421 12477888999999999999
Q ss_pred EEEeCCEEEEEEeCcCc
Q 041192 115 AHQENGVLRITVPKLAE 131 (161)
Q Consensus 115 A~~~nGiL~I~~pK~~~ 131 (161)
+++.+|.|.|+|.|..+
T Consensus 61 ~~~~~~~vei~L~K~~~ 77 (84)
T cd06466 61 VSVLPTKVEITLKKAEP 77 (84)
T ss_pred EEEeCeEEEEEEEcCCC
Confidence 99999999999999875
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.65 E-value=1.1e-06 Score=56.55 Aligned_cols=77 Identities=19% Similarity=0.303 Sum_probs=64.7
Q ss_pred ceeeEEEcCCEEEEEEEcCCC--CCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcc
Q 041192 32 ATADWMETPTAHVITLDIPGM--KKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSAD 109 (161)
Q Consensus 32 p~~di~e~~~~y~i~v~LPG~--~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd 109 (161)
|.++|.++++...|.+.+++. +++++.|.+++ +.|.|+..... . ..|...+.|...|+
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~-~~l~v~~~~~~--------~-----------~~~~~~~~L~~~I~ 60 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTD-TSLSVSIKSGD--------G-----------KEYLLEGELFGEID 60 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEET-TEEEEEEEETT--------S-----------CEEEEEEEBSS-BE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEe-eEEEEEEEccC--------C-----------ceEEEEEEEeeeEc
Confidence 678999999999999999665 59999999999 89999966443 0 14677888999999
Q ss_pred cCCeeEEEeCCEEEEEEeC
Q 041192 110 LEHVKAHQENGVLRITVPK 128 (161)
Q Consensus 110 ~~~i~A~~~nGiL~I~~pK 128 (161)
++..+..+.++.|.|+|.|
T Consensus 61 ~~~s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 61 PDESTWKVKDNKIEITLKK 79 (79)
T ss_dssp CCCEEEEEETTEEEEEEEB
T ss_pred chhcEEEEECCEEEEEEEC
Confidence 9999999999999999987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.35 E-value=8.2e-06 Score=56.44 Aligned_cols=78 Identities=17% Similarity=0.250 Sum_probs=67.0
Q ss_pred ceeeEEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccC
Q 041192 32 ATADWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLE 111 (161)
Q Consensus 32 p~~di~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~ 111 (161)
|+++++++.+...|.+.+||+ +++.|.++. +.|.|++.... .. ..|...+.|...|+++
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~-~~l~v~~~~~~--------~~----------~~y~~~~~L~~~I~pe 59 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEP-TSLSFKAKGGG--------GG----------KKYEFDLEFYKEIDPE 59 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEEC-CEEEEEEEcCC--------CC----------eeEEEEeEhhhhcccc
Confidence 688999999999999999998 889999999 89999975321 00 1366777999999999
Q ss_pred CeeEEEeCCEEEEEEeCcC
Q 041192 112 HVKAHQENGVLRITVPKLA 130 (161)
Q Consensus 112 ~i~A~~~nGiL~I~~pK~~ 130 (161)
..+.++.++.|.|+|.|..
T Consensus 60 ~s~~~v~~~kveI~L~K~~ 78 (108)
T cd06465 60 ESKYKVTGRQIEFVLRKKE 78 (108)
T ss_pred ccEEEecCCeEEEEEEECC
Confidence 9999999999999999987
No 29
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.34 E-value=2.8e-06 Score=69.21 Aligned_cols=65 Identities=25% Similarity=0.564 Sum_probs=57.0
Q ss_pred CCEEEEEEEcCCC-CCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccCCeeEEEe
Q 041192 40 PTAHVITLDIPGM-KKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLEHVKAHQE 118 (161)
Q Consensus 40 ~~~y~i~v~LPG~-~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~ 118 (161)
.+.++|++.|||+ +..+|+|.|.+ ..|.|..... .|...+.||..||.+..+|.|.
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~-~~l~l~~~~~----------------------~y~L~l~LP~~V~~~~~~Akf~ 316 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSE-DRLSLSSPKP----------------------KYRLDLPLPYPVDEDNGKAKFD 316 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeC-CEEEEEeCCC----------------------ceEEEccCCCcccCCCceEEEc
Confidence 5789999999999 78999999999 8899884432 3778899999999999999994
Q ss_pred --CCEEEEEEe
Q 041192 119 --NGVLRITVP 127 (161)
Q Consensus 119 --nGiL~I~~p 127 (161)
.++|+|+||
T Consensus 317 ~~~~~L~vtlp 327 (328)
T PF08190_consen 317 KKTKTLTVTLP 327 (328)
T ss_pred cCCCEEEEEEE
Confidence 589999998
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.17 E-value=1.9e-05 Score=52.03 Aligned_cols=77 Identities=22% Similarity=0.298 Sum_probs=64.8
Q ss_pred eEEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccCCee
Q 041192 35 DWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLEHVK 114 (161)
Q Consensus 35 di~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~ 114 (161)
||+++++...|.+.++|+.++++.|++++ +.|.+++.... . ..|.-.+.|...|+++..+
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~-~~l~~~~~~~~--------~-----------~~y~~~~~L~~~I~p~~s~ 60 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEK-RELSATVKLPS--------G-----------NDYSLKLHLLHPIVPEQSS 60 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeC-CEEEEEEECCC--------C-----------CcEEEeeecCceecchhcE
Confidence 57889999999999999999999999999 88999876432 0 1355677899999999888
Q ss_pred EEEeCCEEEEEEeCcCc
Q 041192 115 AHQENGVLRITVPKLAE 131 (161)
Q Consensus 115 A~~~nGiL~I~~pK~~~ 131 (161)
.+...+-+.|.|.|...
T Consensus 61 ~~v~~~kiei~L~K~~~ 77 (84)
T cd06489 61 YKILSTKIEIKLKKTEA 77 (84)
T ss_pred EEEeCcEEEEEEEcCCC
Confidence 88888899999999764
No 31
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=98.09 E-value=4.3e-05 Score=50.21 Aligned_cols=75 Identities=27% Similarity=0.369 Sum_probs=61.4
Q ss_pred eeEEEcCCEEEEEEEcC-CCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccCC
Q 041192 34 ADWMETPTAHVITLDIP-GMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLEH 112 (161)
Q Consensus 34 ~di~e~~~~y~i~v~LP-G~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~ 112 (161)
+.+.++++...|.+.+| ++.++|+.|.+.+ +.|.|+... . .+.-.-.|...|+++.
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~-~~l~v~~~~-~---------------------~~~l~~~L~~~I~~~~ 57 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITP-KHLKVGVKG-G---------------------EPLLDGELYAKVKVDE 57 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEc-CEEEEEECC-C---------------------CceEcCcccCceeEcC
Confidence 46889999999999998 7899999999999 889998531 1 1112335889999999
Q ss_pred eeEEEeC-CEEEEEEeCcCc
Q 041192 113 VKAHQEN-GVLRITVPKLAE 131 (161)
Q Consensus 113 i~A~~~n-GiL~I~~pK~~~ 131 (161)
..-++.+ ..|.|+|+|..+
T Consensus 58 s~w~~~~~~~v~i~L~K~~~ 77 (85)
T cd06467 58 STWTLEDGKLLEITLEKRNE 77 (85)
T ss_pred CEEEEeCCCEEEEEEEECCC
Confidence 8888999 999999999875
No 32
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.99 E-value=0.00013 Score=48.50 Aligned_cols=80 Identities=15% Similarity=0.161 Sum_probs=66.9
Q ss_pred eeeEEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccCC
Q 041192 33 TADWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLEH 112 (161)
Q Consensus 33 ~~di~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~ 112 (161)
++||+++++...|.+.+.|+.++++.+.+++ +.|.|+..... . ..|...+.|-..|+++.
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~-~~l~v~~~~~~----------~---------~~y~~~l~L~~~I~~~~ 61 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANS-TVLTIHIVFEG----------N---------KEFQLDIELWGVIDVEK 61 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecC-CEEEEEEECCC----------C---------ceEEEEeeccceEChhH
Confidence 4789999999999999999999999999988 88888754322 0 13667788999999999
Q ss_pred eeEEEeCCEEEEEEeCcCcc
Q 041192 113 VKAHQENGVLRITVPKLAEE 132 (161)
Q Consensus 113 i~A~~~nGiL~I~~pK~~~~ 132 (161)
.+.+....-+.|.|.|..+.
T Consensus 62 s~~~v~~~kvei~L~K~~~~ 81 (87)
T cd06488 62 SSVNMLPTKVEIKLRKAEPG 81 (87)
T ss_pred cEEEecCcEEEEEEEeCCCC
Confidence 88888899999999998753
No 33
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.98 E-value=0.00011 Score=48.61 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=60.3
Q ss_pred eeEEEcCCEEEEEEEcC-CCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccCC
Q 041192 34 ADWMETPTAHVITLDIP-GMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLEH 112 (161)
Q Consensus 34 ~di~e~~~~y~i~v~LP-G~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~ 112 (161)
+++.++.+...|.+.+| |+.++|++|.++. +.|.|...... .+ ..-.|...|+++.
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~-~~l~v~~~~~~---------------------~~-~~g~L~~~I~~d~ 57 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLP-DHISIALKDQA---------------------PL-LEGKLYSSIDHES 57 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEec-CEEEEEeCCCC---------------------eE-EeCcccCcccccC
Confidence 46889999999999996 9999999999999 88888742111 11 2337889999999
Q ss_pred eeEEEeCC-EEEEEEeCcCcc
Q 041192 113 VKAHQENG-VLRITVPKLAEE 132 (161)
Q Consensus 113 i~A~~~nG-iL~I~~pK~~~~ 132 (161)
..-.+++| .|.|.|.|..+.
T Consensus 58 Stw~i~~~~~l~i~L~K~~~~ 78 (85)
T cd06493 58 STWIIKENKSLEVSLIKKDEG 78 (85)
T ss_pred cEEEEeCCCEEEEEEEECCCC
Confidence 77777777 799999998753
No 34
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.96 E-value=0.00019 Score=47.94 Aligned_cols=79 Identities=14% Similarity=0.256 Sum_probs=65.0
Q ss_pred eeeEEEcCCEEEEEEEcCCCCC---CCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEE-CCCCc
Q 041192 33 TADWMETPTAHVITLDIPGMKK---DDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFK-MPMSA 108 (161)
Q Consensus 33 ~~di~e~~~~y~i~v~LPG~~~---~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~-LP~~v 108 (161)
.++|.++++...|.+.+|+... +++.|.++. +.|.|.+.... + ..|.-.+. |-..|
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~-~~l~v~~~~~~---------~----------~~~~~~~~~L~~~I 62 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTE-RSFELKVHDLN---------G----------KNYRFTINRLLKKI 62 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecC-CEEEEEEECCC---------C----------cEEEEEehHhhCcc
Confidence 5789999999999999999876 999999999 89999874321 0 02444554 88999
Q ss_pred ccCCeeEEEeCCEEEEEEeCcCc
Q 041192 109 DLEHVKAHQENGVLRITVPKLAE 131 (161)
Q Consensus 109 d~~~i~A~~~nGiL~I~~pK~~~ 131 (161)
+++..+..+..+-+.|+|.|..+
T Consensus 63 ~~e~s~~~~~~~ki~i~L~K~~~ 85 (92)
T cd06468 63 DPEKSSFKVKTDRIVITLAKKKE 85 (92)
T ss_pred CccccEEEEeCCEEEEEEEeCCC
Confidence 99999999999999999999875
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.54 E-value=0.0014 Score=44.35 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=62.4
Q ss_pred ccceeeEEEcCCEEEEEEEcC-CCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCc
Q 041192 30 ALATADWMETPTAHVITLDIP-GMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSA 108 (161)
Q Consensus 30 ~~p~~di~e~~~~y~i~v~LP-G~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~v 108 (161)
..+.+.+..+.+...|.+.|| |++..|+.|.+.. +.|.|..+ . ..+ -.| .|...|
T Consensus 4 ~~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~-~~l~V~~~--g----------~~~-----l~G------~L~~~I 59 (93)
T cd06494 4 KTPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGS-RDISLAVK--G----------QEV-----LKG------KLFDSV 59 (93)
T ss_pred cCCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEc-CEEEEEEC--C----------EEE-----EcC------cccCcc
Confidence 347899999999999999998 8999999999999 88998731 1 001 012 578899
Q ss_pred ccCCeeEEEeCCE-EEEEEeCcCc
Q 041192 109 DLEHVKAHQENGV-LRITVPKLAE 131 (161)
Q Consensus 109 d~~~i~A~~~nGi-L~I~~pK~~~ 131 (161)
+++.-.-++++|- |.|.|.|...
T Consensus 60 ~~destWtled~k~l~I~L~K~~~ 83 (93)
T cd06494 60 VADECTWTLEDRKLIRIVLTKSNR 83 (93)
T ss_pred CcccCEEEEECCcEEEEEEEeCCC
Confidence 9999888888875 8999999864
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.41 E-value=0.0041 Score=43.05 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=61.6
Q ss_pred ceeeEEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccC
Q 041192 32 ATADWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLE 111 (161)
Q Consensus 32 p~~di~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~ 111 (161)
|++++.+..+...|++.+|+ ..|++|.+++ +.|.++|.-.. +. .|.-.+.|-..|+++
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~-~~l~f~~~~~~---------g~----------~y~~~l~l~~~I~pe 59 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEK-SKLTFSCLNGD---------NV----------KIYNEIELYDRVDPN 59 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEec-CEEEEEEECCC---------Cc----------EEEEEEEeecccCcc
Confidence 78999999999999999999 5899999999 88999984211 11 244567788889999
Q ss_pred CeeEEEeCCEEEEEEeCcCc
Q 041192 112 HVKAHQENGVLRITVPKLAE 131 (161)
Q Consensus 112 ~i~A~~~nGiL~I~~pK~~~ 131 (161)
..+.+...--+.|.|.|...
T Consensus 60 ~Sk~~v~~r~ve~~L~K~~~ 79 (106)
T cd00237 60 DSKHKRTDRSILCCLRKGKE 79 (106)
T ss_pred cCeEEeCCceEEEEEEeCCC
Confidence 87777666678888988864
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.10 E-value=0.0036 Score=52.00 Aligned_cols=82 Identities=17% Similarity=0.200 Sum_probs=68.3
Q ss_pred cceeeEEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCccc
Q 041192 31 LATADWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADL 110 (161)
Q Consensus 31 ~p~~di~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~ 110 (161)
.+..+|+++++...|.|.+.|+.++++.|.+.+ +.|.|+..... . ..|...+.|-..|++
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~-~~l~v~~~~~~----------~---------~~y~~~~~L~~~I~p 215 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGE-QILSVVIEVPG----------E---------DAYHLQPRLFGKIIP 215 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeec-CEEEEEEecCC----------C---------cceeecccccccccc
Confidence 367899999999999999999999999999999 88888865332 0 135556789899999
Q ss_pred CCeeEEEeCCEEEEEEeCcCcc
Q 041192 111 EHVKAHQENGVLRITVPKLAEE 132 (161)
Q Consensus 111 ~~i~A~~~nGiL~I~~pK~~~~ 132 (161)
+..+.+..---+.|+|.|....
T Consensus 216 ~~s~~~v~~~Kiei~l~K~~~~ 237 (356)
T PLN03088 216 DKCKYEVLSTKIEIRLAKAEPI 237 (356)
T ss_pred cccEEEEecceEEEEEecCCCC
Confidence 9988888877999999998753
No 38
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=96.93 E-value=0.0043 Score=46.62 Aligned_cols=81 Identities=26% Similarity=0.273 Sum_probs=64.7
Q ss_pred cceeeEEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCccc
Q 041192 31 LATADWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADL 110 (161)
Q Consensus 31 ~p~~di~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~ 110 (161)
.+.+||+++....+|.+..+++.++|+.|.+.. +.|.+..+.... ..|.....|-..|.+
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~-~~l~~~~~~~~g-------------------~~~~l~~~L~~~I~p 62 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISE-NTLSIVIQLPSG-------------------SEYNLQLKLYHEIIP 62 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeec-ceEEEEEecCCc-------------------hhhhhhHHhcccccc
Confidence 468899999999999999999999999999998 888888665431 024445557788888
Q ss_pred CCeeEEEeCCEEEEEEeCcCc
Q 041192 111 EHVKAHQENGVLRITVPKLAE 131 (161)
Q Consensus 111 ~~i~A~~~nGiL~I~~pK~~~ 131 (161)
+..+-..----++|+|+|...
T Consensus 63 e~~s~k~~stKVEI~L~K~~~ 83 (196)
T KOG1309|consen 63 EKSSFKVFSTKVEITLAKAEI 83 (196)
T ss_pred cceeeEeeeeeEEEEeccccc
Confidence 887777777788999999654
No 39
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=96.58 E-value=0.062 Score=35.61 Aligned_cols=77 Identities=16% Similarity=0.233 Sum_probs=55.7
Q ss_pred eeEEEcCCEEEEEEEcCCC--CCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccC
Q 041192 34 ADWMETPTAHVITLDIPGM--KKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLE 111 (161)
Q Consensus 34 ~di~e~~~~y~i~v~LPG~--~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~ 111 (161)
.||+.+++..+|.+...+. ...++.+.... +.|.|+-.... ..|...+.|-..|+++
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~-~~l~v~~~~~~--------------------~~~~~~~~L~~~I~~~ 59 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQ-RELRVEIILGD--------------------KSYLLHLDLSNEVQWP 59 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCC-CEEEEEEECCC--------------------ceEEEeeeccccCCCC
Confidence 4899999999999999864 44555565566 67888743211 1366777888889877
Q ss_pred CeeEEEe--CCEEEEEEeCcCcc
Q 041192 112 HVKAHQE--NGVLRITVPKLAEE 132 (161)
Q Consensus 112 ~i~A~~~--nGiL~I~~pK~~~~ 132 (161)
. +.++. -|-++|+|.|..+.
T Consensus 60 ~-~~~~~~~~~KVEI~L~K~e~~ 81 (87)
T cd06490 60 C-EVRISTETGKIELVLKKKEPE 81 (87)
T ss_pred c-EEEEcccCceEEEEEEcCCCC
Confidence 5 55554 78999999998754
No 40
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=96.49 E-value=0.044 Score=36.41 Aligned_cols=74 Identities=19% Similarity=0.300 Sum_probs=56.0
Q ss_pred eEEEcCCEEEEEEEcC-C--CCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccC
Q 041192 35 DWMETPTAHVITLDIP-G--MKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLE 111 (161)
Q Consensus 35 di~e~~~~y~i~v~LP-G--~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~ 111 (161)
.+..+.+...|++.|| + .+..||+|.+.. +.|.|.-+-.. . + -.=.|...|+++
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~-~~l~v~~~g~~------------~---------~-i~G~L~~~V~~d 58 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQR-KHLKVGLKGQP------------P---------I-IDGELYNEVKVE 58 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEEec-CEEEEEECCCc------------e---------E-EeCcccCccccc
Confidence 4567788899999996 3 789999999999 88888632111 1 1 122578889999
Q ss_pred CeeEEEeCC-EEEEEEeCcCc
Q 041192 112 HVKAHQENG-VLRITVPKLAE 131 (161)
Q Consensus 112 ~i~A~~~nG-iL~I~~pK~~~ 131 (161)
.-.=.+++| .|.|+|-|...
T Consensus 59 es~Wtled~~~l~i~L~K~~~ 79 (87)
T cd06492 59 ESSWLIEDGKVVTVNLEKINK 79 (87)
T ss_pred ccEEEEeCCCEEEEEEEECCC
Confidence 878888886 89999999864
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.09 E-value=0.13 Score=35.24 Aligned_cols=81 Identities=16% Similarity=0.279 Sum_probs=61.0
Q ss_pred ccceeeEEEcCCEEEEEEEcC-CC-CCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCC
Q 041192 30 ALATADWMETPTAHVITLDIP-GM-KKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMS 107 (161)
Q Consensus 30 ~~p~~di~e~~~~y~i~v~LP-G~-~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~ 107 (161)
....|.+..+-+...|.+.|| |. +..||.|.+.. ..|.|.-+... ....+. .| .|...
T Consensus 3 ~~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~-~~l~v~~~~~~--------~~~~~i-----~G------~L~~~ 62 (102)
T cd06495 3 VRENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQS-SSIRVSVRDGG--------GEKVLM-----EG------EFTHK 62 (102)
T ss_pred cCCceEEEeECCeEEEEEECCCCCccceEEEEEEEc-CEEEEEEecCC--------CCceEE-----eC------cccCc
Confidence 346789999999999999999 64 67899999999 88888854211 000111 12 58889
Q ss_pred cccCCeeEEEeCC-EEEEEEeCcC
Q 041192 108 ADLEHVKAHQENG-VLRITVPKLA 130 (161)
Q Consensus 108 vd~~~i~A~~~nG-iL~I~~pK~~ 130 (161)
|+.+.-.-.+++| .|.|+|-|..
T Consensus 63 V~~des~Wtled~~~l~I~L~K~~ 86 (102)
T cd06495 63 INTENSLWSLEPGKCVLLSLSKCS 86 (102)
T ss_pred ccCccceEEEeCCCEEEEEEEECC
Confidence 9999888889886 5899999975
No 42
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=91.10 E-value=2.4 Score=31.89 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=62.4
Q ss_pred CCCccceeeEEEcCCEEEEEEEcC-CC-CCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEEC
Q 041192 27 QTLALATADWMETPTAHVITLDIP-GM-KKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKM 104 (161)
Q Consensus 27 ~~~~~p~~di~e~~~~y~i~v~LP-G~-~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~L 104 (161)
.+...+.+.|..+=..+.|.|.+| |+ +..+|.|.+.. ..|.|.-+-.. .+ -.=.|
T Consensus 14 ng~~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~-~hI~V~~kg~~------------~i----------ldG~L 70 (179)
T KOG2265|consen 14 NGADEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQS-KHIKVGLKGQP------------PI----------LDGEL 70 (179)
T ss_pred CCccccceeeeeehhheEEEeecCCCCcccceEEEEeee-eEEEEecCCCC------------ce----------ecCcc
Confidence 556678899999999999999887 88 88999999999 88888743222 11 11236
Q ss_pred CCCcccCCeeEEEeCCEEEEEEeCcCc
Q 041192 105 PMSADLEHVKAHQENGVLRITVPKLAE 131 (161)
Q Consensus 105 P~~vd~~~i~A~~~nGiL~I~~pK~~~ 131 (161)
...|+.+...-++++|.+.|.+-++..
T Consensus 71 ~~~vk~des~WtiEd~k~i~i~l~K~~ 97 (179)
T KOG2265|consen 71 SHSVKVDESTWTIEDGKMIVILLKKSN 97 (179)
T ss_pred ccccccccceEEecCCEEEEEEeeccc
Confidence 778888888888999988777766654
No 43
>PF14913 DPCD: DPCD protein family
Probab=88.90 E-value=4.2 Score=31.03 Aligned_cols=83 Identities=19% Similarity=0.312 Sum_probs=61.3
Q ss_pred CCCCccceeeEEEcCCEEEEEEE-cCCCCCCCeEEEEecC-eEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEE
Q 041192 26 HQTLALATADWMETPTAHVITLD-IPGMKKDDVKIEIEEN-KVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFK 103 (161)
Q Consensus 26 ~~~~~~p~~di~e~~~~y~i~v~-LPG~~~~di~V~v~~~-~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~ 103 (161)
....+.|-+-=.++...|+-++. ||. .++-.+|+++++ +.++|+-..+ .|.+.|.
T Consensus 81 ~ESs~nP~~~r~dTk~~fqWRIRNLPY-P~dvYsVtvd~~~r~ivvRTtNK----------------------KYyKk~~ 137 (194)
T PF14913_consen 81 KESSSNPIFVRRDTKTSFQWRIRNLPY-PKDVYSVTVDEDERCIVVRTTNK----------------------KYYKKFS 137 (194)
T ss_pred eecCCCCEEEEEcCccceEEEEccCCC-CccceEEEEcCCCcEEEEECcCc----------------------cceeEec
Confidence 45566677766778888888874 664 888888888653 4577774333 3778899
Q ss_pred CCC------CcccCCeeEEEeCCEEEEEEeCcCc
Q 041192 104 MPM------SADLEHVKAHQENGVLRITVPKLAE 131 (161)
Q Consensus 104 LP~------~vd~~~i~A~~~nGiL~I~~pK~~~ 131 (161)
+|+ .++.+.++..+.|..|.|+..|...
T Consensus 138 IPDl~R~~l~l~~~~ls~~h~nNTLIIsYkKP~~ 171 (194)
T PF14913_consen 138 IPDLDRCGLPLEQSALSFAHQNNTLIISYKKPKE 171 (194)
T ss_pred CCcHHhhCCCcchhhceeeeecCeEEEEecCcHH
Confidence 996 3477788999999999999988653
No 44
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=88.90 E-value=5.9 Score=28.51 Aligned_cols=82 Identities=12% Similarity=0.222 Sum_probs=50.2
Q ss_pred ceeeEEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccC
Q 041192 32 ATADWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLE 111 (161)
Q Consensus 32 p~~di~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~ 111 (161)
..+.|...++ ..+++...| +.+++..++ +.|.|+.+... ..-...+..... ...-.-.+.||.....+
T Consensus 66 ~~V~I~~~~~-~~i~v~~~~---k~~~~~~~~-~~L~I~~~~~~------~~~~~~~~~~~~-~~~~~i~I~lP~~~~l~ 133 (166)
T PF13349_consen 66 GDVEIKPSDD-DKIKVEYNG---KKPEISVEG-GTLTIKSKDRE------SFFFKGFNFNNS-DNKSKITIYLPKDYKLD 133 (166)
T ss_pred eeEEEEEcCC-ccEEEEEcC---cEEEEEEcC-CEEEEEEeccc------ccccceEEEccc-CCCcEEEEEECCCCcee
Confidence 4555555443 444555522 268888888 89999877222 000112211111 23456788999998888
Q ss_pred CeeEEEeCCEEEEE
Q 041192 112 HVKAHQENGVLRIT 125 (161)
Q Consensus 112 ~i~A~~~nGiL~I~ 125 (161)
+++..-.+|-++|.
T Consensus 134 ~i~i~~~~G~i~i~ 147 (166)
T PF13349_consen 134 KIDIKTSSGDITIE 147 (166)
T ss_pred EEEEEeccccEEEE
Confidence 99988899987765
No 45
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=86.86 E-value=4 Score=30.70 Aligned_cols=83 Identities=16% Similarity=0.210 Sum_probs=60.3
Q ss_pred CCccceeeEEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCC
Q 041192 28 TLALATADWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMS 107 (161)
Q Consensus 28 ~~~~p~~di~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~ 107 (161)
....|.+.|.+..+...+++.++. ..+..|.+++ ..|+++|+...+ .+ .+...|.|=..
T Consensus 4 ~~~~p~v~Waqr~~~vyltv~Ved--~~d~~v~~e~-~~l~fs~k~~~d----------~~--------~~~~~ief~~e 62 (180)
T KOG3158|consen 4 GMQPPEVKWAQRRDLVYLTVCVED--AKDVHVNLEP-SKLTFSCKSGAD----------NH--------KYENEIEFFDE 62 (180)
T ss_pred cccCCcchhhhhcCeEEEEEEecc--Cccceeeccc-cEEEEEeccCCC----------ce--------eeEEeeehhhh
Confidence 345688999999999999999986 4567778888 789999886541 11 35667888889
Q ss_pred cccCCeeEEEeCCEEEEEEeCcCcc
Q 041192 108 ADLEHVKAHQENGVLRITVPKLAEE 132 (161)
Q Consensus 108 vd~~~i~A~~~nGiL~I~~pK~~~~ 132 (161)
||++..+-+-. +-+...++++...
T Consensus 63 Idpe~sk~k~~-~r~if~i~~K~e~ 86 (180)
T KOG3158|consen 63 IDPEKSKHKRT-SRSIFCILRKKEL 86 (180)
T ss_pred cCHhhcccccc-ceEEEEEEEcccc
Confidence 99998776655 5555555554433
No 46
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=85.07 E-value=5.7 Score=31.81 Aligned_cols=85 Identities=18% Similarity=0.164 Sum_probs=71.1
Q ss_pred CccceeeEEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCc
Q 041192 29 LALATADWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSA 108 (161)
Q Consensus 29 ~~~p~~di~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~v 108 (161)
...-+.||+.++...+|.|..-|.-++.-.|..++ -.|.|.-..... ...|...+.|=.-|
T Consensus 212 V~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~-~~l~V~ivf~~g------------------na~fd~d~kLwgvv 272 (320)
T KOG1667|consen 212 VVKCRHDWHQTNGFVTINVYAKGALPETSNIEANG-TTLHVSIVFGFG------------------NASFDLDYKLWGVV 272 (320)
T ss_pred cccchhhhhhcCCeEEEEEEeccCCcccceeeeCC-eEEEEEEEecCC------------------Cceeeccceeeeee
Confidence 45568899999999999999999999988888888 888888665331 12577888887788
Q ss_pred ccCCeeEEEeCCEEEEEEeCcCcc
Q 041192 109 DLEHVKAHQENGVLRITVPKLAEE 132 (161)
Q Consensus 109 d~~~i~A~~~nGiL~I~~pK~~~~ 132 (161)
+++..++.+-.--++|+|+|.++.
T Consensus 273 nve~s~v~m~~tkVEIsl~k~ep~ 296 (320)
T KOG1667|consen 273 NVEESSVVMGETKVEISLKKAEPG 296 (320)
T ss_pred chhhceEEeecceEEEEEeccCCC
Confidence 999999999989999999999876
No 47
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=78.47 E-value=5.1 Score=26.25 Aligned_cols=30 Identities=17% Similarity=0.421 Sum_probs=26.4
Q ss_pred EEEEEEEcC-CCCCCCeEEEE-ecCeEEEEEEE
Q 041192 42 AHVITLDIP-GMKKDDVKIEI-EENKVLRVSGE 72 (161)
Q Consensus 42 ~y~i~v~LP-G~~~~di~V~v-~~~~~L~I~g~ 72 (161)
.|.=.+.|| +++.+.|+-.+ ++ +.|+|.|+
T Consensus 51 ~F~R~~~LP~~Vd~~~v~A~~~~d-GvL~I~~~ 82 (83)
T cd06477 51 SFTRQYQLPDGVEHKDLSAMLCHD-GILVVETK 82 (83)
T ss_pred EEEEEEECCCCcchheEEEEEcCC-CEEEEEec
Confidence 677789999 89999999998 67 99999975
No 48
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=76.02 E-value=6.8 Score=25.92 Aligned_cols=34 Identities=9% Similarity=0.226 Sum_probs=29.7
Q ss_pred EEEEEEECCCCcccCCeeEEEeCCEEEEEEeCcCc
Q 041192 97 KFWRQFKMPMSADLEHVKAHQENGVLRITVPKLAE 131 (161)
Q Consensus 97 ~f~r~~~LP~~vd~~~i~A~~~nGiL~I~~pK~~~ 131 (161)
.|.-...|| .++.+.|+.++.+|.|+|.--+...
T Consensus 9 ~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~~ 42 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKVKDGKVQVSAERENR 42 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecc
Confidence 577888999 8899999999999999999987553
No 49
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=74.49 E-value=7.5 Score=25.23 Aligned_cols=32 Identities=9% Similarity=0.075 Sum_probs=28.5
Q ss_pred EEEEEEECCCCcccCCeeEEEeCCEEEEEEeCc
Q 041192 97 KFWRQFKMPMSADLEHVKAHQENGVLRITVPKL 129 (161)
Q Consensus 97 ~f~r~~~LP~~vd~~~i~A~~~nGiL~I~~pK~ 129 (161)
.|.-.+.|| .++++.|+..+.+|.|+|..-+.
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~ 39 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHE 39 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 588899999 89999999999999999998643
No 50
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=73.94 E-value=13 Score=24.31 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=30.8
Q ss_pred eEEEEEEECCCCcccCCeeEEEeCCEEEEEEeCcCcc
Q 041192 96 GKFWRQFKMPMSADLEHVKAHQENGVLRITVPKLAEE 132 (161)
Q Consensus 96 g~f~r~~~LP~~vd~~~i~A~~~nGiL~I~~pK~~~~ 132 (161)
..|.-.+.|| .+..+.|+..++++.|+|.-.+....
T Consensus 11 ~~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~~ 46 (90)
T cd06470 11 NNYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADEE 46 (90)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcccc
Confidence 3688899999 68999999999999999998766554
No 51
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=73.78 E-value=6.8 Score=25.59 Aligned_cols=32 Identities=6% Similarity=0.140 Sum_probs=28.2
Q ss_pred EEEEEEECCCCcccCCeeEEEeCCEEEEEEeCc
Q 041192 97 KFWRQFKMPMSADLEHVKAHQENGVLRITVPKL 129 (161)
Q Consensus 97 ~f~r~~~LP~~vd~~~i~A~~~nGiL~I~~pK~ 129 (161)
.|.-.+.|| .+.++.|+..+.||.|+|.--+.
T Consensus 8 ~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (83)
T cd06476 8 KYQVFLDVC-HFTPDEITVRTVDNLLEVSARHP 39 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 588889998 88899999999999999998654
No 52
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=73.11 E-value=5.8 Score=26.02 Aligned_cols=30 Identities=17% Similarity=0.406 Sum_probs=25.9
Q ss_pred CEEEEEEEcCCCCCCCeEEEEecCeEEEEEE
Q 041192 41 TAHVITLDIPGMKKDDVKIEIEENKVLRVSG 71 (161)
Q Consensus 41 ~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g 71 (161)
+.|.-.+.||.+..+.++-++.+ +.|+|+-
T Consensus 62 g~f~r~~~lp~v~~~~i~A~~~d-GvL~I~l 91 (93)
T cd06471 62 GSFSRSFYLPNVDEEEIKAKYEN-GVLKITL 91 (93)
T ss_pred cEEEEEEECCCCCHHHCEEEEEC-CEEEEEE
Confidence 45677788999999999999999 9999984
No 53
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=72.55 E-value=8 Score=25.35 Aligned_cols=32 Identities=13% Similarity=0.063 Sum_probs=28.2
Q ss_pred EEEEEEECCCCcccCCeeEEEeCCEEEEEEeCc
Q 041192 97 KFWRQFKMPMSADLEHVKAHQENGVLRITVPKL 129 (161)
Q Consensus 97 ~f~r~~~LP~~vd~~~i~A~~~nGiL~I~~pK~ 129 (161)
.|.-.+.|| .++++.|+....+|.|+|.--+.
T Consensus 11 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06497 11 KFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHS 42 (86)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 588889998 88999999999999999998643
No 54
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=72.54 E-value=2.1 Score=34.69 Aligned_cols=82 Identities=12% Similarity=0.039 Sum_probs=63.5
Q ss_pred ceeeEEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccC
Q 041192 32 ATADWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLE 111 (161)
Q Consensus 32 p~~di~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~ 111 (161)
..+++-++.+...|-+.-|-+..++|++-+++ ++|.|+-+.... .--|.-.+.|-..|+++
T Consensus 177 i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~-NTL~I~~q~~~~------------------~~~~~~~~~Ly~ev~P~ 237 (368)
T COG5091 177 IAYDFSETSDTAIIFIYRPPVGDEQVSPVLEG-NTLSISYQPRRL------------------RLWNDITISLYKEVYPD 237 (368)
T ss_pred eeeeccccceeEEEEEecCCCCccccceeecC-Ccceeeeecccc------------------chHHHhhhhhhhhcCcc
Confidence 45677788888888888899999999999999 899999665441 11245677888899999
Q ss_pred CeeEEEeCCEEEEEEeCcCcc
Q 041192 112 HVKAHQENGVLRITVPKLAEE 132 (161)
Q Consensus 112 ~i~A~~~nGiL~I~~pK~~~~ 132 (161)
..+-+..--.+.|++-|....
T Consensus 238 ~~s~k~fsK~~e~~l~KV~~v 258 (368)
T COG5091 238 IRSIKSFSKRVEVHLRKVEMV 258 (368)
T ss_pred hhhhhhcchhheehhhhhhhh
Confidence 877666568888888887654
No 55
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=72.01 E-value=7.2 Score=24.67 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=28.5
Q ss_pred cCCEEEEEEEcC-CCCCCCeEEEEecCeEEEEEEE
Q 041192 39 TPTAHVITLDIP-GMKKDDVKIEIEENKVLRVSGE 72 (161)
Q Consensus 39 ~~~~y~i~v~LP-G~~~~di~V~v~~~~~L~I~g~ 72 (161)
....|.-.+.|| +++.+.++..+.+ +.|.|+..
T Consensus 54 ~~~~f~r~~~LP~~vd~~~i~a~~~~-G~L~I~~p 87 (88)
T cd06464 54 SYGSFSRSFRLPEDVDPDKIKASLEN-GVLTITLP 87 (88)
T ss_pred eCcEEEEEEECCCCcCHHHcEEEEeC-CEEEEEEc
Confidence 357899999999 6899999999999 99999853
No 56
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=72.01 E-value=15 Score=22.72 Aligned_cols=44 Identities=14% Similarity=0.249 Sum_probs=33.3
Q ss_pred ceeeEE-EcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEec
Q 041192 32 ATADWM-ETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKS 75 (161)
Q Consensus 32 p~~di~-e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~ 75 (161)
-++.+. -..+.|.|++..||+..-.-.|.+..+....|....+.
T Consensus 25 tp~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L~~ 69 (71)
T PF08308_consen 25 TPLTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTLEP 69 (71)
T ss_pred CcceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEEEE
Confidence 344555 45789999999999999888888876577777766543
No 57
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=71.34 E-value=10 Score=25.38 Aligned_cols=31 Identities=10% Similarity=0.202 Sum_probs=26.2
Q ss_pred CEEEEEEEcC-CCCCCCeEEEEecCeEEEEEE
Q 041192 41 TAHVITLDIP-GMKKDDVKIEIEENKVLRVSG 71 (161)
Q Consensus 41 ~~y~i~v~LP-G~~~~di~V~v~~~~~L~I~g 71 (161)
..|.=.+.|| +++.++|+-.+..++.|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 4567789999 899999999998449999986
No 58
>PRK10743 heat shock protein IbpA; Provisional
Probab=70.02 E-value=18 Score=25.99 Aligned_cols=33 Identities=3% Similarity=0.090 Sum_probs=27.3
Q ss_pred EEEEEEECCCCcccCCeeEEEeCCEEEEEEeCcC
Q 041192 97 KFWRQFKMPMSADLEHVKAHQENGVLRITVPKLA 130 (161)
Q Consensus 97 ~f~r~~~LP~~vd~~~i~A~~~nGiL~I~~pK~~ 130 (161)
.|.-...|| .++.++|+..+++|.|+|.--+..
T Consensus 46 ~~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~ 78 (137)
T PRK10743 46 HYRIAIAVA-GFAESELEITAQDNLLVVKGAHAD 78 (137)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEECc
Confidence 366677898 889999999999999999986544
No 59
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=68.28 E-value=19 Score=24.36 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=30.4
Q ss_pred ccceeeEEEcCCEEEEEEEcCCC-----CCCCeEEEEecCeEEEEE
Q 041192 30 ALATADWMETPTAHVITLDIPGM-----KKDDVKIEIEENKVLRVS 70 (161)
Q Consensus 30 ~~p~~di~e~~~~y~i~v~LPG~-----~~~di~V~v~~~~~L~I~ 70 (161)
..|.+.|+++++.|.|.+--+.- .++...|.-++ +.|.|.
T Consensus 24 ~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~-g~~fI~ 68 (95)
T PF12992_consen 24 GKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEED-GNLFIE 68 (95)
T ss_pred CCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeC-CEEEEe
Confidence 35999999999999999877653 56666677666 666665
No 60
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=67.42 E-value=16 Score=24.16 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=27.4
Q ss_pred EEEEEEECCCCcccCCeeEEEeCCEEEEEEeCc
Q 041192 97 KFWRQFKMPMSADLEHVKAHQENGVLRITVPKL 129 (161)
Q Consensus 97 ~f~r~~~LP~~vd~~~i~A~~~nGiL~I~~pK~ 129 (161)
.|.-.+.|| .++.++++-.+.++.|.|+.-+.
T Consensus 8 ~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~ 39 (102)
T PF00011_consen 8 EYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRK 39 (102)
T ss_dssp EEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEE
T ss_pred EEEEEEECC-CCChHHEEEEEecCccceeceee
Confidence 688899999 88999999999999999998877
No 61
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=67.23 E-value=39 Score=23.46 Aligned_cols=45 Identities=22% Similarity=0.350 Sum_probs=31.1
Q ss_pred EEEEEEECCCCc-ccCCeeEEEeCCEEEEEEeCcCccccCCCeEEEecCCCC
Q 041192 97 KFWRQFKMPMSA-DLEHVKAHQENGVLRITVPKLAEEKKRQPNVINIDEESG 147 (161)
Q Consensus 97 ~f~r~~~LP~~v-d~~~i~A~~~nGiL~I~~pK~~~~~~~~~~~I~I~~~~~ 147 (161)
.|..-|....++ +...|+-.+++.+|-...|+.. .++|.|+.+..
T Consensus 45 tys~li~~d~dvG~l~~Vkf~W~~~~~n~~~p~~~------~~~I~Vq~Ge~ 90 (113)
T cd01759 45 TYSAFIDVDVDVGPLTKVKFIWNNNVINITLPKVG------AEKITVQSGKD 90 (113)
T ss_pred EEEEEEEccCCCCCEEEEEEEEeCCccCCCCCeEE------EEEEEEEeCCC
Confidence 466666666666 6667888888887766556553 56899986643
No 62
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=67.09 E-value=9.4 Score=25.03 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=27.2
Q ss_pred CCEEEEEEEcC-CCCCCCeEEEEecCeEEEEEE
Q 041192 40 PTAHVITLDIP-GMKKDDVKIEIEENKVLRVSG 71 (161)
Q Consensus 40 ~~~y~i~v~LP-G~~~~di~V~v~~~~~L~I~g 71 (161)
...|.-.+.|| +++.+.++-.+.+ +.|.|+-
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~n-GvL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLEN-GVLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEEC-CEEEEEe
Confidence 45788899999 6899999999999 9999984
No 63
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=66.71 E-value=15 Score=23.89 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=28.4
Q ss_pred EEEEEEECCCCcccCCeeEEEeCCEEEEEEeCc
Q 041192 97 KFWRQFKMPMSADLEHVKAHQENGVLRITVPKL 129 (161)
Q Consensus 97 ~f~r~~~LP~~vd~~~i~A~~~nGiL~I~~pK~ 129 (161)
.|.-.+.|| .++++.|+...++|.|+|.--+.
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~ 40 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKL 40 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEe
Confidence 578889999 88999999999999999997654
No 64
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=66.01 E-value=13 Score=24.19 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=27.6
Q ss_pred EEEEEEECCCCcccCCeeEEEeCCEEEEEEeC
Q 041192 97 KFWRQFKMPMSADLEHVKAHQENGVLRITVPK 128 (161)
Q Consensus 97 ~f~r~~~LP~~vd~~~i~A~~~nGiL~I~~pK 128 (161)
.|.-.+.|| .++++.|+....++.|+|.--+
T Consensus 8 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~ 38 (84)
T cd06498 8 KFSVNLDVK-HFSPEELKVKVLGDFIEIHGKH 38 (84)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEE
Confidence 588889998 8899999999999999999854
No 65
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=65.99 E-value=12 Score=22.51 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=20.4
Q ss_pred CCCCCCCeEEEEecCeEEEEEEEEec
Q 041192 50 PGMKKDDVKIEIEENKVLRVSGERKS 75 (161)
Q Consensus 50 PG~~~~di~V~v~~~~~L~I~g~~~~ 75 (161)
++++..+|+|.+.+ +.+.|+|.-..
T Consensus 12 ~~~~~~~i~v~v~~-g~v~L~G~v~s 36 (64)
T PF04972_consen 12 PWLPDSNISVSVEN-GVVTLSGEVPS 36 (64)
T ss_dssp -CTT-TTEEEEEEC-TEEEEEEEESS
T ss_pred cccCCCeEEEEEEC-CEEEEEeeCcH
Confidence 46777799999999 99999999865
No 66
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=65.32 E-value=25 Score=26.37 Aligned_cols=21 Identities=24% Similarity=0.730 Sum_probs=17.4
Q ss_pred CCCeEEEEecCeEEEEEEEEec
Q 041192 54 KDDVKIEIEENKVLRVSGERKS 75 (161)
Q Consensus 54 ~~di~V~v~~~~~L~I~g~~~~ 75 (161)
|++|+|++++ +.|+|+|....
T Consensus 12 P~~V~v~i~~-~~v~vkGp~G~ 32 (178)
T CHL00140 12 PDNVNVSIDD-QIIKVKGPKGT 32 (178)
T ss_pred CCCCEEEEEC-CEEEEECCCEE
Confidence 5688999999 89999987655
No 67
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=64.73 E-value=16 Score=23.47 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=30.0
Q ss_pred EEEEEEECCCCcccCCeeEEEeCCEEEEEEeCcCc
Q 041192 97 KFWRQFKMPMSADLEHVKAHQENGVLRITVPKLAE 131 (161)
Q Consensus 97 ~f~r~~~LP~~vd~~~i~A~~~nGiL~I~~pK~~~ 131 (161)
.|.-.+.|| .+.++.|+..++++.|+|..-+...
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~~ 41 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEER 41 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEEECCEEEEEEEEeee
Confidence 588899999 5999999999999999999877654
No 68
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=64.71 E-value=21 Score=22.21 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=28.4
Q ss_pred CEEEEEEEcCC-CCCCCeEEEEecCeEEEEEEEEec
Q 041192 41 TAHVITLDIPG-MKKDDVKIEIEENKVLRVSGERKS 75 (161)
Q Consensus 41 ~~y~i~v~LPG-~~~~di~V~v~~~~~L~I~g~~~~ 75 (161)
+.|.+.++||+ +++++.+..+.+ +.|.|+-.+..
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~-~~l~i~L~K~~ 70 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGN-GVLVFTLVKKE 70 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeC-CEEEEEEEeCC
Confidence 56899999996 699999999999 88999865543
No 69
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=64.32 E-value=9.9 Score=28.53 Aligned_cols=30 Identities=13% Similarity=0.307 Sum_probs=26.8
Q ss_pred EEEcC-CCCCCCeEEEEecCeEEEEEEEEec
Q 041192 46 TLDIP-GMKKDDVKIEIEENKVLRVSGERKS 75 (161)
Q Consensus 46 ~v~LP-G~~~~di~V~v~~~~~L~I~g~~~~ 75 (161)
+..|| |++++.|.-.+..+|.|+|+|.+..
T Consensus 120 ~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~ 150 (173)
T KOG3591|consen 120 KYLLPEDVDPTSVTSTLSSDGVLTIEAPKPP 150 (173)
T ss_pred EecCCCCCChhheEEeeCCCceEEEEccCCC
Confidence 56788 9999999999977799999998876
No 70
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=63.69 E-value=16 Score=23.84 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=29.0
Q ss_pred EEEEEEECCCCcccCCeeEEEeCCEEEEEEeCcC
Q 041192 97 KFWRQFKMPMSADLEHVKAHQENGVLRITVPKLA 130 (161)
Q Consensus 97 ~f~r~~~LP~~vd~~~i~A~~~nGiL~I~~pK~~ 130 (161)
.|.-.+.|| .++++.|+..+.++.|+|+--+..
T Consensus 11 ~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 11 RWKVSLDVN-HFAPEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred eEEEEEECC-CCCHHHEEEEEECCEEEEEEEECc
Confidence 588899999 899999999999999999986543
No 71
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=63.07 E-value=33 Score=26.18 Aligned_cols=79 Identities=10% Similarity=0.200 Sum_probs=56.5
Q ss_pred eeeEEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEE-ECCCCcccC
Q 041192 33 TADWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQF-KMPMSADLE 111 (161)
Q Consensus 33 ~~di~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~-~LP~~vd~~ 111 (161)
.+-|-..++...+.+.|-|+..++++|.++. +.|-+..+.-. .. +|.-.+ .|=..|+++
T Consensus 76 ~ygWDQs~kfVK~yItL~GV~eenVqv~ftp-~Sldl~v~dlq-------GK------------~y~~~vnnLlk~I~vE 135 (224)
T KOG3260|consen 76 LYGWDQSNKFVKMYITLEGVDEENVQVEFTP-MSLDLKVHDLQ-------GK------------NYRMIVNNLLKPISVE 135 (224)
T ss_pred hcCccccCCeeEEEEEeecccccceeEEecc-cceeeeeeecC-------Cc------------ceeeehhhhccccChh
Confidence 4567778888899999999999999999999 88777744222 11 233222 344578888
Q ss_pred CeeEEEeCCEEEEEEeCcCc
Q 041192 112 HVKAHQENGVLRITVPKLAE 131 (161)
Q Consensus 112 ~i~A~~~nGiL~I~~pK~~~ 131 (161)
+-.-..+-....|.+.|.+.
T Consensus 136 ks~~kvKtd~v~I~~kkVe~ 155 (224)
T KOG3260|consen 136 KSSKKVKTDTVLILCKKVEN 155 (224)
T ss_pred hcccccccceEEEeehhhhc
Confidence 87777777777888866543
No 72
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=62.50 E-value=30 Score=22.60 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=29.0
Q ss_pred EEEEEEECCCCcccCCeeEEEeCCEEEEEEeCcCc
Q 041192 97 KFWRQFKMPMSADLEHVKAHQENGVLRITVPKLAE 131 (161)
Q Consensus 97 ~f~r~~~LP~~vd~~~i~A~~~nGiL~I~~pK~~~ 131 (161)
.|.-.+.|| .+.++.|+..++++.|+|.--+...
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~~ 41 (87)
T cd06481 8 GFSLKLDVR-GFSPEDLSVRVDGRKLVVTGKREKK 41 (87)
T ss_pred eEEEEEECC-CCChHHeEEEEECCEEEEEEEEeee
Confidence 577888998 8889999999999999999876543
No 73
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=61.81 E-value=28 Score=25.18 Aligned_cols=33 Identities=9% Similarity=0.091 Sum_probs=28.1
Q ss_pred EEEEEEECCCCcccCCeeEEEeCCEEEEEEeCcC
Q 041192 97 KFWRQFKMPMSADLEHVKAHQENGVLRITVPKLA 130 (161)
Q Consensus 97 ~f~r~~~LP~~vd~~~i~A~~~nGiL~I~~pK~~ 130 (161)
.|.-.+.|| .++.++|...+++|.|+|.--+..
T Consensus 44 ~y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 44 HYRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEEeC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 477788899 889999999999999999987543
No 74
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=58.94 E-value=46 Score=25.11 Aligned_cols=21 Identities=33% Similarity=0.533 Sum_probs=17.8
Q ss_pred CCCeEEEEecCeEEEEEEEEec
Q 041192 54 KDDVKIEIEENKVLRVSGERKS 75 (161)
Q Consensus 54 ~~di~V~v~~~~~L~I~g~~~~ 75 (161)
|++++|++++ +.++|+|.+..
T Consensus 13 P~~V~v~i~~-~~v~VkGp~G~ 33 (180)
T PRK05518 13 PEGVTVEIEG-LVVTVKGPKGE 33 (180)
T ss_pred CCCCEEEEEC-CEEEEECCCeE
Confidence 6789999999 89999987654
No 75
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=58.01 E-value=49 Score=24.73 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=17.6
Q ss_pred CCCeEEEEecCeEEEEEEEEec
Q 041192 54 KDDVKIEIEENKVLRVSGERKS 75 (161)
Q Consensus 54 ~~di~V~v~~~~~L~I~g~~~~ 75 (161)
|++|+|++++ +.|+|+|.+..
T Consensus 11 P~~V~v~~~~-~~v~v~Gp~G~ 31 (175)
T TIGR03654 11 PAGVEVTIDG-NVVTVKGPKGE 31 (175)
T ss_pred CCCcEEEEeC-CEEEEEcCCeE
Confidence 5789999998 89999987654
No 76
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=57.17 E-value=56 Score=24.38 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=17.5
Q ss_pred CCCeEEEEecCeEEEEEEEEec
Q 041192 54 KDDVKIEIEENKVLRVSGERKS 75 (161)
Q Consensus 54 ~~di~V~v~~~~~L~I~g~~~~ 75 (161)
|++++|++++ +.|+|+|.+..
T Consensus 7 P~~V~v~i~~-~~i~vkGp~G~ 27 (170)
T TIGR03653 7 PEGVSVTIEG-NIVTVKGPKGE 27 (170)
T ss_pred CCCCEEEEeC-CEEEEECCCeE
Confidence 5788999999 89999987654
No 77
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=55.15 E-value=18 Score=22.23 Aligned_cols=32 Identities=34% Similarity=0.368 Sum_probs=15.9
Q ss_pred CCeeEEEeCCEEEEEEeCcCccccCCCeEEEecC
Q 041192 111 EHVKAHQENGVLRITVPKLAEEKKRQPNVINIDE 144 (161)
Q Consensus 111 ~~i~A~~~nGiL~I~~pK~~~~~~~~~~~I~I~~ 144 (161)
..|.|.|+||+|.-.=|-.-+. -...+|.|..
T Consensus 3 ~~I~aiYe~GvlkPl~~~~L~E--g~~V~i~I~~ 34 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEPVDLPE--GEEVKITIEE 34 (60)
T ss_dssp --EEEEEETTEEEECS-----T--TEEEEEEE--
T ss_pred ceEEEEEECCEEEECCCCCCCC--CCEEEEEEec
Confidence 4589999999998664443332 1234555554
No 78
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=54.03 E-value=22 Score=22.27 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=16.3
Q ss_pred CCCeEEEEecCeEEEEEEEEec
Q 041192 54 KDDVKIEIEENKVLRVSGERKS 75 (161)
Q Consensus 54 ~~di~V~v~~~~~L~I~g~~~~ 75 (161)
++.++|++++ ..+.+.|....
T Consensus 2 P~gV~v~~~~-~~i~v~G~~g~ 22 (77)
T PF00347_consen 2 PEGVKVTIKG-NIITVKGPKGE 22 (77)
T ss_dssp STTCEEEEET-TEEEEESSSSE
T ss_pred CCcEEEEEeC-cEEEEECCCEe
Confidence 4678899999 88888876544
No 79
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=52.73 E-value=36 Score=24.40 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=27.4
Q ss_pred CEEEEEEEcC-CCCCCCeEEEEecCeEEEEEEEEec
Q 041192 41 TAHVITLDIP-GMKKDDVKIEIEENKVLRVSGERKS 75 (161)
Q Consensus 41 ~~y~i~v~LP-G~~~~di~V~v~~~~~L~I~g~~~~ 75 (161)
..|.-++.|| +++.+.+.-++.+ +.|+|+-.+..
T Consensus 100 ~~f~r~~~Lp~~v~~~~~~A~~~n-GvL~I~lpk~~ 134 (146)
T COG0071 100 GEFERTFRLPEKVDPEVIKAKYKN-GLLTVTLPKAE 134 (146)
T ss_pred eeEEEEEECcccccccceeeEeeC-cEEEEEEeccc
Confidence 4567788888 5687888999999 99999977655
No 80
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=51.20 E-value=66 Score=24.08 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=17.6
Q ss_pred CCCeEEEEecCeEEEEEEEEec
Q 041192 54 KDDVKIEIEENKVLRVSGERKS 75 (161)
Q Consensus 54 ~~di~V~v~~~~~L~I~g~~~~ 75 (161)
|++|+|++++ +.|+|+|.+..
T Consensus 12 P~~V~v~~~~-~~v~vkGp~G~ 32 (178)
T PRK05498 12 PAGVEVTING-NVVTVKGPKGE 32 (178)
T ss_pred CCCCEEEEEC-CEEEEECCCEE
Confidence 5789999999 89999987654
No 81
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.86 E-value=30 Score=29.30 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=41.7
Q ss_pred EeeeeeEEEEEEECCC-CcccCCeeEEEeCCEEEEEEeCcCccccCCCeEEEecCCCCCCcCCCccc
Q 041192 91 AERISGKFWRQFKMPM-SADLEHVKAHQENGVLRITVPKLAEEKKRQPNVINIDEESGTSYGEGTKA 156 (161)
Q Consensus 91 ~e~~~g~f~r~~~LP~-~vd~~~i~A~~~nGiL~I~~pK~~~~~~~~~~~I~I~~~~~~~~~~~~~~ 156 (161)
.+..-|.|.....|-- +.+.+.+-+..+.-...+++|..+.. +...|.|++.++-+.+.++.+
T Consensus 189 ~~~~~~~~~~~v~vqa~Da~Gn~L~v~I~P~evn~tV~vek~s---ksVpv~Vk~tGslpdg~si~s 252 (403)
T COG4856 189 DEKIEGNFSSKVKVQAVDAKGNVLPVAIDPQEVNLTVPVEKPS---KSVPVNVKRTGSLPDGVSISS 252 (403)
T ss_pred ccccccceeeeEEEEEEcCCCCCcccccCCceEEEEEeeeccC---cccceeeeecccCCCCcceee
Confidence 3445567777776642 34444455666777778888888876 567788888877666655543
No 82
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=50.20 E-value=64 Score=24.39 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=18.9
Q ss_pred CCCCCeEEEEecCeEEEEEEEEec
Q 041192 52 MKKDDVKIEIEENKVLRVSGERKS 75 (161)
Q Consensus 52 ~~~~di~V~v~~~~~L~I~g~~~~ 75 (161)
.-|++++|++++ +.+++.|.+..
T Consensus 10 ~~P~gV~V~i~~-~~v~vkGpkGe 32 (178)
T COG0097 10 VIPAGVTVSIEG-QVVTVKGPKGE 32 (178)
T ss_pred ecCCCeEEEEec-cEEEEECCCcE
Confidence 348899999998 99999987654
No 83
>PRK10568 periplasmic protein; Provisional
Probab=49.94 E-value=43 Score=25.54 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=21.9
Q ss_pred CCCCCCCeEEEEecCeEEEEEEEEec
Q 041192 50 PGMKKDDVKIEIEENKVLRVSGERKS 75 (161)
Q Consensus 50 PG~~~~di~V~v~~~~~L~I~g~~~~ 75 (161)
++++..+|+|.+.+ +.++++|.-..
T Consensus 73 ~~i~~~~I~V~v~~-G~V~L~G~V~s 97 (203)
T PRK10568 73 DNIKSTDISVKTHQ-KVVTLSGFVES 97 (203)
T ss_pred CCCCCCceEEEEEC-CEEEEEEEeCC
Confidence 67778899999999 99999999874
No 84
>PF12673 DUF3794: Domain of unknown function (DUF3794); InterPro: IPR024300 This presumed domain is functionally uncharacterised. It is found in bacteria, and is approximately 90 amino acids in length.
Probab=49.35 E-value=65 Score=20.28 Aligned_cols=48 Identities=17% Similarity=0.175 Sum_probs=29.3
Q ss_pred eEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCC
Q 041192 57 VKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPM 106 (161)
Q Consensus 57 i~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~ 106 (161)
.++.+.+ +.|.|.|......++...++...++..+.. =.|+..+.+|.
T Consensus 16 ~~~~v~~-~kv~v~G~l~~~ilY~~~~~~~~v~~~~~~-ipF~~~ie~~g 63 (87)
T PF12673_consen 16 TEIKVID-DKVIVEGELNVKILYVSEDDEQPVYSVEQE-IPFSQFIELPG 63 (87)
T ss_pred EEEEEEC-CEEEEEEEEEEEEEEEeCCCCCCEEEEEEE-eeeeEEEECCC
Confidence 3456677 789999987765444444444334444432 26888888854
No 85
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=48.67 E-value=64 Score=24.52 Aligned_cols=21 Identities=24% Similarity=0.705 Sum_probs=17.8
Q ss_pred CCCeEEEEecCeEEEEEEEEec
Q 041192 54 KDDVKIEIEENKVLRVSGERKS 75 (161)
Q Consensus 54 ~~di~V~v~~~~~L~I~g~~~~ 75 (161)
|++++|++++ +.|+|+|.+..
T Consensus 12 P~~V~V~i~~-~~ItVkGpkG~ 32 (189)
T PTZ00179 12 PEDVTVSVKD-RIVTVKGKRGT 32 (189)
T ss_pred CCCCEEEEeC-CEEEEECCCcE
Confidence 6789999999 89999987655
No 86
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=47.97 E-value=65 Score=20.26 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=27.0
Q ss_pred EEEEEEECCCCcccCCeeEEEeCCEEEEEEe
Q 041192 97 KFWRQFKMPMSADLEHVKAHQENGVLRITVP 127 (161)
Q Consensus 97 ~f~r~~~LP~~vd~~~i~A~~~nGiL~I~~p 127 (161)
...-.|.+|..++.++++..+.+.-|.|.+.
T Consensus 9 ~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 9 EVTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 4667788999999999999999999999986
No 87
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=45.70 E-value=77 Score=24.09 Aligned_cols=22 Identities=14% Similarity=0.360 Sum_probs=18.3
Q ss_pred CCCCeEEEEecCeEEEEEEEEec
Q 041192 53 KKDDVKIEIEENKVLRVSGERKS 75 (161)
Q Consensus 53 ~~~di~V~v~~~~~L~I~g~~~~ 75 (161)
=|++++|++++ +.|+|+|.+..
T Consensus 12 IP~~V~V~i~~-~~v~VkGp~G~ 33 (190)
T PTZ00027 12 IPEGVTVTVKS-RKVTVTGKYGE 33 (190)
T ss_pred cCCCCEEEEEC-CEEEEECCCce
Confidence 36899999999 89999987554
No 88
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=42.43 E-value=13 Score=27.24 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=18.1
Q ss_pred CCCcccCCeeEEEeCCEEEEEEeC
Q 041192 105 PMSADLEHVKAHQENGVLRITVPK 128 (161)
Q Consensus 105 P~~vd~~~i~A~~~nGiL~I~~pK 128 (161)
-+.+..+.-.+.|.||+|+|.|+-
T Consensus 66 ~e~~~~~~~Dv~y~~GVLTl~lg~ 89 (156)
T KOG3413|consen 66 AEEVPGEGFDVDYADGVLTLKLGS 89 (156)
T ss_pred HhhcCccccccccccceEEEEecC
Confidence 344555666688999999999983
No 89
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=38.85 E-value=76 Score=20.57 Aligned_cols=40 Identities=15% Similarity=0.269 Sum_probs=25.7
Q ss_pred ccccEEEEeeeeeEEEEEEECCCCcccCC-eeEEEeCCEEE
Q 041192 84 QREKWHRAERISGKFWRQFKMPMSADLEH-VKAHQENGVLR 123 (161)
Q Consensus 84 ~~~~~~~~e~~~g~f~r~~~LP~~vd~~~-i~A~~~nGiL~ 123 (161)
..+.|......+-=|.|.|.+|+...+.. +.-.|.+|-+.
T Consensus 29 ~pG~y~~~g~~i~i~~R~F~F~Dg~e~~~~~~l~f~~~~V~ 69 (85)
T PF14814_consen 29 RPGEYSRSGNRIEIYTRGFDFPDGQEPARRVRLTFSGGRVS 69 (85)
T ss_dssp STTEEEEETTEEEEEE--EEETTCEE--EEEEEEEETTEEE
T ss_pred CCeEEEEECCEEEEEECCCCCCCCCccCEEEEEEECCCEEE
Confidence 44556655555666899999999986665 88889887443
No 90
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=37.55 E-value=1.2e+02 Score=20.07 Aligned_cols=32 Identities=13% Similarity=0.245 Sum_probs=27.9
Q ss_pred eeEEEEEEECCCCcccCCeeEEEeCCEEEEEE
Q 041192 95 SGKFWRQFKMPMSADLEHVKAHQENGVLRITV 126 (161)
Q Consensus 95 ~g~f~r~~~LP~~vd~~~i~A~~~nGiL~I~~ 126 (161)
.....-+|+||.++....+...+...-|+|.+
T Consensus 14 ~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 14 MDEVFIEVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred cCEEEEEEECCCCCceeeEEEEEEcCEEEEEE
Confidence 34566788999999999999999999999997
No 91
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.81 E-value=92 Score=20.96 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=27.9
Q ss_pred eeEEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEE
Q 041192 34 ADWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGER 73 (161)
Q Consensus 34 ~di~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~ 73 (161)
++|.+.+| .|....||.+ .|.|+.++ +.|.|.+..
T Consensus 26 ~~v~~eGD--~ivas~pgis--~ieik~E~-kkL~v~t~~ 60 (96)
T COG4004 26 WTVSEEGD--RIVASSPGIS--RIEIKPEN-KKLLVNTTD 60 (96)
T ss_pred eeEeeccc--EEEEecCCce--EEEEeccc-ceEEEeccc
Confidence 66778888 6778899975 58888888 899999843
No 92
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=35.00 E-value=59 Score=23.44 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=22.0
Q ss_pred CCCCCCCeEEEEecCeEEEEEEEEec
Q 041192 50 PGMKKDDVKIEIEENKVLRVSGERKS 75 (161)
Q Consensus 50 PG~~~~di~V~v~~~~~L~I~g~~~~ 75 (161)
.|+...++.|.+.+ +.++++|....
T Consensus 38 ~~~~~~~i~V~v~~-G~v~l~G~v~s 62 (147)
T PRK11198 38 QGLGDADVNVQVED-GKATVSGDAAS 62 (147)
T ss_pred cCCCcCCceEEEeC-CEEEEEEEeCC
Confidence 47788889999999 99999999876
No 93
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=33.82 E-value=1.7e+02 Score=22.85 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=26.7
Q ss_pred EEEecCeEEEEEEEEecCCccccccccccEE------EEeeeeeEEEEEEECCC
Q 041192 59 IEIEENKVLRVSGERKSDDYYKEGVQREKWH------RAERISGKFWRQFKMPM 106 (161)
Q Consensus 59 V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~------~~e~~~g~f~r~~~LP~ 106 (161)
|.+++ +.|+|++.+.... .......+. .....+|.|+-++.||.
T Consensus 60 v~v~~-G~L~i~a~~~~~~---~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~ 109 (258)
T cd02178 60 VSVED-GNLVLSATRHPGT---ELGNGYKVTTGSITSKEKVKYGYFEARAKASN 109 (258)
T ss_pred eEEEC-CEEEEEEEcCCCC---cCCCCccEEEEEEEeCCceEEEEEEEEEEcCC
Confidence 56678 7899999876521 001111222 12236789999999985
No 94
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=33.61 E-value=2.2e+02 Score=21.88 Aligned_cols=82 Identities=9% Similarity=0.081 Sum_probs=54.1
Q ss_pred CCEEEEEEEc-C-CCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccCCeeEEE
Q 041192 40 PTAHVITLDI-P-GMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLEHVKAHQ 117 (161)
Q Consensus 40 ~~~y~i~v~L-P-G~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~ 117 (161)
.+-+.+.++= + -+.|. --+++++.+.++|.|.... .-..++.++.-.+..|.-...+...+. ..+-|+|.+
T Consensus 98 ~~~~~L~i~~~~~k~sPK-~i~WiDD~~L~vIIG~a~G-----TvS~GGnLy~~nl~tg~~~~ly~~~dk-kqQVis~e~ 170 (200)
T PF15525_consen 98 NNWWSLQIDQNEEKYSPK-YIEWIDDNNLAVIIGYAHG-----TVSKGGNLYKYNLNTGNLTELYEWKDK-KQQVISAEK 170 (200)
T ss_pred CceEEEEecCcccccCCc-eeEEecCCcEEEEEccccc-----eEccCCeEEEEEccCCceeEeeecccc-ceeEEEEEE
Confidence 3444444332 2 24455 4467777677777776554 455677888777778887777766655 566699999
Q ss_pred eCCEEEEEEeC
Q 041192 118 ENGVLRITVPK 128 (161)
Q Consensus 118 ~nGiL~I~~pK 128 (161)
..+.|.+.+--
T Consensus 171 ~gd~L~Lki~v 181 (200)
T PF15525_consen 171 NGDNLNLKINV 181 (200)
T ss_pred eCCEEEEEEEE
Confidence 99988877643
No 95
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=32.82 E-value=47 Score=22.71 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=14.4
Q ss_pred CCeeEEEeCCEEEEEEe
Q 041192 111 EHVKAHQENGVLRITVP 127 (161)
Q Consensus 111 ~~i~A~~~nGiL~I~~p 127 (161)
..+.+.+.+|||+|+++
T Consensus 28 ~d~D~e~~~gVLti~f~ 44 (105)
T cd00503 28 ADIDVETQGGVLTLTFG 44 (105)
T ss_pred cCEeeeccCCEEEEEEC
Confidence 45778889999999998
No 96
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=32.49 E-value=57 Score=22.35 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=15.2
Q ss_pred CeeEEEeCCEEEEEEeCc
Q 041192 112 HVKAHQENGVLRITVPKL 129 (161)
Q Consensus 112 ~i~A~~~nGiL~I~~pK~ 129 (161)
.+.+.+.+|+|+|.++..
T Consensus 31 d~d~e~~~gVLti~~~~~ 48 (109)
T PF01491_consen 31 DIDVERSGGVLTIEFPDG 48 (109)
T ss_dssp TEEEEEETTEEEEEETTS
T ss_pred ceEEEccCCEEEEEECCC
Confidence 578999999999999543
No 97
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=32.19 E-value=1.5e+02 Score=19.36 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=12.3
Q ss_pred eeEEEeCCEEEEEEeC
Q 041192 113 VKAHQENGVLRITVPK 128 (161)
Q Consensus 113 i~A~~~nGiL~I~~pK 128 (161)
+.+.++||-.++++-.
T Consensus 70 l~i~~kDgk~r~~~~~ 85 (91)
T PF14730_consen 70 LIIDCKDGKYRLTITN 85 (91)
T ss_pred EEEEEECCEEEEEEEE
Confidence 6677889988888754
No 98
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=30.85 E-value=48 Score=22.71 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=14.4
Q ss_pred eeEEEeCCEEEEEEeCc
Q 041192 113 VKAHQENGVLRITVPKL 129 (161)
Q Consensus 113 i~A~~~nGiL~I~~pK~ 129 (161)
+.+.+.+|||+|+++..
T Consensus 29 ~D~e~~~gVLti~f~~~ 45 (105)
T PRK00446 29 IDCERNGGVLTLTFENG 45 (105)
T ss_pred eeeeccCCEEEEEECCC
Confidence 66888999999999853
No 99
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=30.15 E-value=48 Score=22.58 Aligned_cols=17 Identities=24% Similarity=0.517 Sum_probs=14.2
Q ss_pred CeeEEEeCCEEEEEEeC
Q 041192 112 HVKAHQENGVLRITVPK 128 (161)
Q Consensus 112 ~i~A~~~nGiL~I~~pK 128 (161)
.+.+.+.+|||+|+++.
T Consensus 26 d~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERAGGVLTLTFEN 42 (102)
T ss_pred CeeeecCCCEEEEEECC
Confidence 36777889999999984
No 100
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=29.90 E-value=96 Score=23.54 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=13.3
Q ss_pred CCeEEEEecCeEEEEEEEEec
Q 041192 55 DDVKIEIEENKVLRVSGERKS 75 (161)
Q Consensus 55 ~di~V~v~~~~~L~I~g~~~~ 75 (161)
..+.+..+. +.+.|+|..+.
T Consensus 131 ~~i~v~~~~-~~V~V~Gtlkt 150 (188)
T PRK13726 131 TSVRVWPQY-GRVDIRGVLKT 150 (188)
T ss_pred eeEEEccCC-CEEEEEEEEEE
Confidence 455666556 77788887665
No 101
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=26.63 E-value=65 Score=19.86 Aligned_cols=22 Identities=14% Similarity=0.465 Sum_probs=18.0
Q ss_pred CCCCCeEEEEecCeEEEEEEEEe
Q 041192 52 MKKDDVKIEIEENKVLRVSGERK 74 (161)
Q Consensus 52 ~~~~di~V~v~~~~~L~I~g~~~ 74 (161)
|+.+.|.|.... +.|.|.|+.=
T Consensus 23 f~~~~I~l~t~~-g~l~I~G~~L 44 (66)
T PF07873_consen 23 FDDEEIRLNTKK-GKLTIKGEGL 44 (66)
T ss_dssp EETTEEEEEETT-EEEEEEEEEE
T ss_pred ECCCEEEEEeCC-EEEEEECceE
Confidence 567888888888 8999999853
No 102
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.60 E-value=33 Score=29.43 Aligned_cols=75 Identities=15% Similarity=0.238 Sum_probs=50.7
Q ss_pred ceeeEEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCc-cc
Q 041192 32 ATADWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSA-DL 110 (161)
Q Consensus 32 p~~di~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~v-d~ 110 (161)
|.+.+..+++...|.+..|-.+...+.+...+ +.+..+ .|.|-.+..+|..+ +-
T Consensus 4 p~f~itqdee~~~L~I~~p~~~a~~le~~a~~-nm~~f~------------------------~~pyflrl~~p~~~~~d 58 (466)
T KOG3247|consen 4 PQFAITQDEEFCTLIIPRPLNQASKLEIDAAA-NMASFS------------------------AGPYFLRLAGPGMVEDD 58 (466)
T ss_pred ceeeeeecCceEEEEeeccccchhccchhhHh-hhhhhc------------------------cchhHHhhcCcchhhhh
Confidence 66778888999999999997777777777766 554444 23344556666655 22
Q ss_pred CCeeEEE--eCCEEEEEEeCcCc
Q 041192 111 EHVKAHQ--ENGVLRITVPKLAE 131 (161)
Q Consensus 111 ~~i~A~~--~nGiL~I~~pK~~~ 131 (161)
..-.|+| ++|-..|.+||..+
T Consensus 59 ~~~n~s~d~kd~~~~vK~~K~~~ 81 (466)
T KOG3247|consen 59 ARPNASYDAKDGYAHVKVPKFHP 81 (466)
T ss_pred ccccCccccccceeEEeecCCCc
Confidence 3344544 67888888888544
No 103
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=25.41 E-value=2.5e+02 Score=21.12 Aligned_cols=49 Identities=10% Similarity=0.100 Sum_probs=26.7
Q ss_pred CCCeEEEEecCeEEEEEEEEecCCccccccccccEEE-EeeeeeEEEEEEECCCC
Q 041192 54 KDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHR-AERISGKFWRQFKMPMS 107 (161)
Q Consensus 54 ~~di~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~-~e~~~g~f~r~~~LP~~ 107 (161)
+++++|+ + +.|+|++.+.... ...-.+..+.. ....+|.|+-++.+|..
T Consensus 31 ~~nv~v~--~-g~L~l~~~~~~~~--~~~~tsg~i~S~~~f~yG~~ear~k~~~~ 80 (212)
T cd02175 31 ADNVEFS--D-GGLALTLTNDTYG--EKPYACGEYRTRGFYGYGRYEVRMKPAKG 80 (212)
T ss_pred cccEEEE--C-CeEEEEEeCCcCC--CCccccceEEECceEEeeEEEEEEEcCCC
Confidence 5565554 6 7788888765410 00011122221 12368899999999853
No 104
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=24.79 E-value=1.4e+02 Score=21.78 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=19.8
Q ss_pred EEECCCCcccCCeeEEEeCCEEEEEEeCc
Q 041192 101 QFKMPMSADLEHVKAHQENGVLRITVPKL 129 (161)
Q Consensus 101 ~~~LP~~vd~~~i~A~~~nGiL~I~~pK~ 129 (161)
++.=|+.|-+........+|-++++||+.
T Consensus 148 t~~~p~~V~p~~~~~~~~~~~~~~~lp~~ 176 (177)
T PF06964_consen 148 TFENPENVVPVTSTVSAEGGTFTYTLPPY 176 (177)
T ss_dssp CSSSTTSSEEEEEEEEEETTEEEEEE-SS
T ss_pred CCCCCCEEEEEEeeEEecCCEEEEEeCCC
Confidence 33457777777655666788999999874
No 105
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=24.11 E-value=3.8e+02 Score=23.47 Aligned_cols=52 Identities=21% Similarity=0.357 Sum_probs=35.8
Q ss_pred eeeeEEEEEEECCCCcccCCeeEEEe---CCEEEEEEeCcCccccCCCeEEEecCCCC
Q 041192 93 RISGKFWRQFKMPMSADLEHVKAHQE---NGVLRITVPKLAEEKKRQPNVINIDEESG 147 (161)
Q Consensus 93 ~~~g~f~r~~~LP~~vd~~~i~A~~~---nGiL~I~~pK~~~~~~~~~~~I~I~~~~~ 147 (161)
+-.|.|..+=-.|.+--.-+|..+|+ ||||.|+.--+-.. .+.+|.|.-...
T Consensus 484 ~lLGkFdltGipPAPRGvpqIEVtFevDangiL~VsAeDKgtg---~~~kitItNd~~ 538 (663)
T KOG0100|consen 484 HLLGKFDLTGIPPAPRGVPQIEVTFEVDANGILQVSAEDKGTG---KKEKITITNDKG 538 (663)
T ss_pred cccccccccCCCCCCCCCccEEEEEEEccCceEEEEeeccCCC---CcceEEEecCCC
Confidence 34677776654555555667777774 99999998666544 567888876644
No 106
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=24.01 E-value=53 Score=22.19 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=12.4
Q ss_pred eEEEeCCEEEEEEeC
Q 041192 114 KAHQENGVLRITVPK 128 (161)
Q Consensus 114 ~A~~~nGiL~I~~pK 128 (161)
.+.+.+|||+|+++.
T Consensus 30 D~e~~~gVLti~~~~ 44 (97)
T TIGR03422 30 DVEYSSGVLTLELPS 44 (97)
T ss_pred ccccCCCEEEEEECC
Confidence 567889999999954
No 107
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=23.46 E-value=3.1e+02 Score=21.62 Aligned_cols=71 Identities=17% Similarity=0.201 Sum_probs=35.5
Q ss_pred EEEEE-EEcCCCCCCCeEEEEec-CeEEEEEEEEecCCccccccccccEEEEeeeeeEEEEEEECCCCcccCCeeEEEeC
Q 041192 42 AHVIT-LDIPGMKKDDVKIEIEE-NKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLEHVKAHQEN 119 (161)
Q Consensus 42 ~y~i~-v~LPG~~~~di~V~v~~-~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~n 119 (161)
+|.|. -.|||+..+==-|+... ++.|.... ++...++.-. ..|..-|++.|...-|++.|.. ..|
T Consensus 9 ~~~i~~~~l~g~~~e~SGLTy~pd~~tLfaV~-----------d~~~~i~els-~~G~vlr~i~l~g~~D~EgI~y-~g~ 75 (248)
T PF06977_consen 9 RVVIEAKPLPGILDELSGLTYNPDTGTLFAVQ-----------DEPGEIYELS-LDGKVLRRIPLDGFGDYEGITY-LGN 75 (248)
T ss_dssp EEEEEEEE-TT--S-EEEEEEETTTTEEEEEE-----------TTTTEEEEEE-TT--EEEEEE-SS-SSEEEEEE--ST
T ss_pred EEEEeeeECCCccCCccccEEcCCCCeEEEEE-----------CCCCEEEEEc-CCCCEEEEEeCCCCCCceeEEE-ECC
Confidence 34443 57999987622355542 25544431 1122233322 3578889999998789999864 578
Q ss_pred CEEEEE
Q 041192 120 GVLRIT 125 (161)
Q Consensus 120 GiL~I~ 125 (161)
|.+.|+
T Consensus 76 ~~~vl~ 81 (248)
T PF06977_consen 76 GRYVLS 81 (248)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 877765
No 108
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=23.45 E-value=1.2e+02 Score=18.71 Aligned_cols=29 Identities=10% Similarity=0.304 Sum_probs=20.1
Q ss_pred CEEEEEEEcCCCCCCCe-EEEEecCeEEEE
Q 041192 41 TAHVITLDIPGMKKDDV-KIEIEENKVLRV 69 (161)
Q Consensus 41 ~~y~i~v~LPG~~~~di-~V~v~~~~~L~I 69 (161)
+.|.|.+..+|+..... .|.+..+....|
T Consensus 48 g~Y~l~v~~~g~~~~~~~~v~v~~~~~~~~ 77 (82)
T PF13620_consen 48 GTYTLRVSAPGYQPQTQENVTVTAGQTTTV 77 (82)
T ss_dssp EEEEEEEEBTTEE-EEEEEEEESSSSEEE-
T ss_pred EeEEEEEEECCcceEEEEEEEEeCCCEEEE
Confidence 67999999999988877 577765344443
No 109
>PF05309 TraE: TraE protein; InterPro: IPR007973 This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilisation of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression []. The exact function of the TraE protein is unknown.; GO: 0000746 conjugation
Probab=23.16 E-value=1.4e+02 Score=22.27 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=12.9
Q ss_pred CCeEEEEecCeEEEEEEEEec
Q 041192 55 DDVKIEIEENKVLRVSGERKS 75 (161)
Q Consensus 55 ~di~V~v~~~~~L~I~g~~~~ 75 (161)
+++.+...+ +.+.|+|..+.
T Consensus 131 ~~i~~d~~~-~~V~V~G~l~t 150 (187)
T PF05309_consen 131 KSIEVDPET-LTVFVTGTLKT 150 (187)
T ss_pred eEEEEecCC-CEEEEEEEEEE
Confidence 456666666 67777777544
No 110
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=22.91 E-value=1.3e+02 Score=18.20 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=18.3
Q ss_pred EEcCCCCC-CCeEEEEecCeEEEEE
Q 041192 47 LDIPGMKK-DDVKIEIEENKVLRVS 70 (161)
Q Consensus 47 v~LPG~~~-~di~V~v~~~~~L~I~ 70 (161)
++-.||.. +.|+|++.+ +.|+|+
T Consensus 33 L~~aGF~~G~~v~V~v~~-g~lvIt 56 (57)
T PF08845_consen 33 LEEAGFTIGDPVKVRVMP-GCLVIT 56 (57)
T ss_pred hHHhCCCCCCEEEEEEEC-CEEEEe
Confidence 44578855 689999999 889886
No 111
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=22.79 E-value=3.5e+02 Score=20.55 Aligned_cols=54 Identities=11% Similarity=0.127 Sum_probs=29.5
Q ss_pred CCCCCCeEEEEecCeEEEEEEEEecCCcc-ccccccccEEE---EeeeeeEEEEEEECCCC
Q 041192 51 GMKKDDVKIEIEENKVLRVSGERKSDDYY-KEGVQREKWHR---AERISGKFWRQFKMPMS 107 (161)
Q Consensus 51 G~~~~di~V~v~~~~~L~I~g~~~~~~~~-~~~~~~~~~~~---~e~~~g~f~r~~~LP~~ 107 (161)
...++++.| ++ +.|+|++.+...... ...-.+..+.. ....+|.|+-++.||..
T Consensus 34 ~~~~~nv~v--~~-G~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~ 91 (235)
T cd08023 34 TYRPENAYV--ED-GNLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG 91 (235)
T ss_pred eCCCCCeEE--EC-CEEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC
Confidence 345666654 47 889999887652000 00011122222 23366888888998853
No 112
>PF14545 DBB: Dof, BCAP, and BANK (DBB) motif,
Probab=22.30 E-value=2.7e+02 Score=20.23 Aligned_cols=34 Identities=9% Similarity=0.122 Sum_probs=25.9
Q ss_pred cCCEEEEEEEcCCC---CCCCeEEEEecCeEEEEEEE
Q 041192 39 TPTAHVITLDIPGM---KKDDVKIEIEENKVLRVSGE 72 (161)
Q Consensus 39 ~~~~y~i~v~LPG~---~~~di~V~v~~~~~L~I~g~ 72 (161)
-.+.|++.+.+|.+ ....|.|.+.-++.+.=+.+
T Consensus 47 ~~N~yt~~~~aPd~~~~pag~V~v~v~~~g~~~~~~~ 83 (142)
T PF14545_consen 47 WENPYTLQFKAPDFCLEPAGSVNVRVYCDGVSLGTRQ 83 (142)
T ss_pred EECCEEEEEECchhcCCCCceEEEEEEECCEEEEEEe
Confidence 35789999999999 88999999966354443433
No 113
>PF12080 GldM_C: GldM C-terminal domain; InterPro: IPR022719 This domain is found in bacteria at the C terminus of the GldM protein. This domain is typically between 169 to 182 amino acids in length and has two completely conserved residues (Y and N) that may be functionally important. GldM, is named for the member from Bacteriodetes Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes [].
Probab=21.60 E-value=1.2e+02 Score=22.72 Aligned_cols=39 Identities=18% Similarity=0.299 Sum_probs=25.2
Q ss_pred eeeEEEcCCEEEEEEEcCCCCCCCeEEEEecCeEEEEEEE
Q 041192 33 TADWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGE 72 (161)
Q Consensus 33 ~~di~e~~~~y~i~v~LPG~~~~di~V~v~~~~~L~I~g~ 72 (161)
.+++...+=.=-|.+.+||+..+.+.++..+ +.|.=.|.
T Consensus 6 ~MNVLY~G~~NpisIsvpgv~~~~v~~s~~g-gsl~~~g~ 44 (181)
T PF12080_consen 6 KMNVLYRGVDNPISISVPGVPSNKVPASATG-GSLSKSGG 44 (181)
T ss_pred ccceEecCCCCcEEEEeCCCCccccEEEeeC-CEEEecCC
Confidence 3444443433457788999999998888876 55544433
No 114
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=21.57 E-value=2.2e+02 Score=26.53 Aligned_cols=53 Identities=19% Similarity=0.125 Sum_probs=33.7
Q ss_pred EEEEeeeeeEEE-EEEECCC--CcccCCeeEEEeCCEEEEEEeCcCccccCCCeEEEec
Q 041192 88 WHRAERISGKFW-RQFKMPM--SADLEHVKAHQENGVLRITVPKLAEEKKRQPNVINID 143 (161)
Q Consensus 88 ~~~~e~~~g~f~-r~~~LP~--~vd~~~i~A~~~nGiL~I~~pK~~~~~~~~~~~I~I~ 143 (161)
....-+..|.|. ..=.+|. .||...+...|++|.|+|.+|-.... .-..|+|.
T Consensus 721 v~v~vkg~G~lg~YsS~~P~~c~v~~~~~~f~y~~g~~~~~~~~~~~~---~~~~v~~~ 776 (777)
T PLN02711 721 VQIGVKGSGEMRVFASEKPRSCKIDGEEVEFGYEDCMVVVQVPWSGSS---GLSLIEYL 776 (777)
T ss_pred EEEEEEeeeEEEEEecCCCeEEEECCEEeeeEecCCEEEEEecCCCcC---CceeEEEe
Confidence 334444555552 2225665 45666788888999999999987633 34556653
No 115
>PF04583 Baculo_p74: Baculoviridae p74 conserved region; InterPro: IPR007663 Baculoviruses are distinct from other virus families in that there are two viral phenotypes: budded virus (BV) and occlusion-derived virus (ODV). BVs disseminate viral infection throughout the tissues of the host and ODVs transmit baculovirus between insect hosts. GFP tagging experiments implicate p74 as an ODV envelope protein [, ].; GO: 0019058 viral infectious cycle
Probab=21.11 E-value=20 Score=28.56 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=14.0
Q ss_pred CCCcCCCchhhhhhccccCC
Q 041192 1 MFLMTGNPFGVLEQTTLKIP 20 (161)
Q Consensus 1 M~l~~~dpf~~l~~~~~~~~ 20 (161)
|.|++||||+--.-.|.+++
T Consensus 119 lvL~~WDPfGYnNMFPr~~l 138 (249)
T PF04583_consen 119 LVLMFWDPFGYNNMFPREYL 138 (249)
T ss_pred HHHHhcCcccccccCCCcch
Confidence 35789999977665555544
No 116
>PRK14290 chaperone protein DnaJ; Provisional
Probab=20.94 E-value=4.9e+02 Score=21.63 Aligned_cols=44 Identities=11% Similarity=0.167 Sum_probs=28.7
Q ss_pred EEEEECCCCcccCCeeEEEeCCEEEEEEeCcCccccCCCeEEEecCCC
Q 041192 99 WRQFKMPMSADLEHVKAHQENGVLRITVPKLAEEKKRQPNVINIDEES 146 (161)
Q Consensus 99 ~r~~~LP~~vd~~~i~A~~~nGiL~I~~pK~~~~~~~~~~~I~I~~~~ 146 (161)
...|+|.+-+-...+....-+|.++|.+|..... ..+|.|...+
T Consensus 275 ~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~----g~~iri~g~G 318 (365)
T PRK14290 275 DQKINFPQAALGGEIEIKLFREKYNLKIPEGTQP----GEVLKIKGAG 318 (365)
T ss_pred EEEeCHHHHhCCCEEEEEcCCceEEEEECCccCC----CcEEEECCCC
Confidence 3455555556555666666789999999965432 5677776543
No 117
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=20.26 E-value=90 Score=20.46 Aligned_cols=45 Identities=13% Similarity=0.195 Sum_probs=28.4
Q ss_pred CccceeeEEEcCCEEEEE--EEcCCCCCCCeEEEEecCeEEEEEEEEec
Q 041192 29 LALATADWMETPTAHVIT--LDIPGMKKDDVKIEIEENKVLRVSGERKS 75 (161)
Q Consensus 29 ~~~p~~di~e~~~~y~i~--v~LPG~~~~di~V~v~~~~~L~I~g~~~~ 75 (161)
...|.+.+.-.. ...|+ -.+=-|+.+.|.|.... +.|.|+|+.=.
T Consensus 17 ~~~p~itl~gr~-~~~Ien~k~I~~y~~~~I~l~t~~-G~l~I~G~~L~ 63 (85)
T TIGR02856 17 LDLPRITLIGNE-HIYIENHRGLVVFSPEEVKLNSTN-GKITIEGKNFV 63 (85)
T ss_pred cCCCEEEEECCc-EEEEECccceEEECCCEEEEEcCc-eEEEEEcccEE
Confidence 344666554432 22222 23334688999999999 89999998533
Done!