RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 041192
(161 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 135 bits (343), Expect = 6e-42
Identities = 62/136 (45%), Positives = 78/136 (57%), Gaps = 5/136 (3%)
Query: 7 NPFGVLEQTTLKIPKRADNHQTLALATADWMETPTAHVITLDIPGMKKDDVKIEIEENKV 66
+PF I A A DW ETP AHV D+PG+KK++VK+E+E+ V
Sbjct: 19 DPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNV 78
Query: 67 LRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLEHVKAHQENGVLRITV 126
L VSGER + K +KWHR ER SGKF R+F++ A +E VKA ENGVL +TV
Sbjct: 79 LVVSGERTKEKEDKN----DKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTV 134
Query: 127 PKLAEEKKRQPNVINI 142
PK AE KK + I I
Sbjct: 135 PK-AEVKKPEVKAIQI 149
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 121 bits (307), Expect = 5e-37
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 34 ADWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAER 93
D E V+ D+PG+ +++++++ +L + GERKS+ + E++ R ER
Sbjct: 7 VDIKEEVNHFVLYADLPGIDPSQIEVQMDKG-ILSIRGERKSESSTET----ERFSRIER 61
Query: 94 ISGKFWRQFKMPMSADLEHVKAHQENGVLRITVPKLAE 131
G F R+F +P SAD + + A NGVL I +PK
Sbjct: 62 RYGSFHRRFALPDSADADGITAAGRNGVLEIRIPKRPA 99
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 112 bits (283), Expect = 1e-32
Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 7/109 (6%)
Query: 35 DWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERI 94
+E + +PG+ K+D+ + + L + +R +
Sbjct: 60 SIIEGDQHIKVIAWLPGVNKEDIILNAVGD-TLEIRAKRSPL---MITESERIIYSEIPE 115
Query: 95 SGKFWRQFKMPMSADLEHVKAHQENGVLRITVPKLAEEKKRQPNVINID 143
+ +R K+P + E+ A ENGVL + +PK K+ INI+
Sbjct: 116 EEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKG---INIE 161
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 111 bits (280), Expect = 1e-32
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 9/102 (8%)
Query: 35 DWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERI 94
D E V+ D+ G K+ +K + L + ER+ + +
Sbjct: 28 DMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITE--------PGVKYLTQR 79
Query: 95 SGKFWRQFKMPMSADLE-HVKAHQENGVLRITVPKLAEEKKR 135
+ ++P + + + ENGVL I +P +
Sbjct: 80 PKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIPIAGTSVFK 121
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 67.5 bits (165), Expect = 1e-15
Identities = 15/101 (14%), Positives = 36/101 (35%), Gaps = 13/101 (12%)
Query: 38 ETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGK 97
P + LD+ +++ +++ + + V + E+ I+ +
Sbjct: 8 TDPGYFSVLLDVKHFSPEEISVKVVGD-HVEVHARHE-----------ERPDEHGFIARE 55
Query: 98 FWRQFKMPMSADLEHVKAH-QENGVLRITVPKLAEEKKRQP 137
F R++++P D V + GVL I + +
Sbjct: 56 FHRRYRLPPGVDPAAVTSALSPEGVLSIQATPASAQASLPS 96
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 66.8 bits (163), Expect = 2e-15
Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 13/106 (12%)
Query: 38 ETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGK 97
VI LD+ +D+ ++++E+ V + G+ +R+ H IS +
Sbjct: 9 SDRDKFVIFLDVKHFSPEDLTVKVQEDFVE-IHGKHN---------ERQDDHG--YISRE 56
Query: 98 FWRQFKMPMSADLEHVKAH-QENGVLRITVPKLAEEKKRQPNVINI 142
F R++++P + D + +G+L + PK+ + I
Sbjct: 57 FHRRYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAI 102
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 68.8 bits (168), Expect = 2e-15
Identities = 19/127 (14%), Positives = 47/127 (37%), Gaps = 13/127 (10%)
Query: 20 PKRADNHQTLALATADWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYY 79
P ++ + LD+ +++K+++ + + V G+ +
Sbjct: 52 PSFLRAPSWFDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDV-IEVHGKHE----- 105
Query: 80 KEGVQREKWHRAERISGKFWRQFKMPMSADLEHVKAH-QENGVLRITVPKLAEEKKRQPN 138
E+ IS +F R++++P D + + +GVL + P+ +
Sbjct: 106 ------ERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTI 159
Query: 139 VINIDEE 145
I +E+
Sbjct: 160 PITREEK 166
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 66.3 bits (162), Expect = 2e-15
Identities = 17/94 (18%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 44 VITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFK 103
+ LD+ +++K+++ + V+ V G+ + E+ IS +F R+++
Sbjct: 9 SVNLDVKHFSPEELKVKVLGD-VIEVHGKHE-----------ERQDEHGFISREFHRKYR 56
Query: 104 MPMSADLEHVKAH-QENGVLRITVPKLAEEKKRQ 136
+P D + + +GVL + P+ +
Sbjct: 57 IPADVDPLTITSSMSSDGVLTVNGPRKQVSGPER 90
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 63.9 bits (156), Expect = 2e-14
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 13/92 (14%)
Query: 38 ETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGK 97
T ++LD+ D++ ++ ++ V ++G+ R+ H IS
Sbjct: 4 HTADRWRVSLDVNHFAPDELTVKTKDGVVE-ITGKHA---------ARQDEHG--YISRC 51
Query: 98 FWRQFKMPMSADLEHVKAH-QENGVLRITVPK 128
F R++ +P D V + G L + P
Sbjct: 52 FTRKYTLPPGVDPTQVSSSLSPEGTLTVEAPM 83
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 61.4 bits (148), Expect = 5e-12
Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
Query: 35 DWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERI 94
+ H+ P DVK+ + NKV V G ++ + + +
Sbjct: 228 AEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVY-VHGVTGKEE--------KTENASHSE 278
Query: 95 SGKFWRQFKMPMSADLEHVKAHQENGVLRITVPKL 129
+F++ F P D +A +G++ + P
Sbjct: 279 HREFYKAFVTPEVVDASKTQAEIVDGLMVVEAPLF 313
Score = 50.6 bits (120), Expect = 3e-08
Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 14/96 (14%)
Query: 44 VITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFK 103
+ ++ K +++ I+ ++NK L V ++ +S R
Sbjct: 115 KVYFNVKNFKAEEITIKADKNK-LVVRAQKSVACGDA------------AMSESVGRSIP 161
Query: 104 MPMSADLEHVKAH-QENGVLRITVPKLAEEKKRQPN 138
+P S D H++A + VL I P K
Sbjct: 162 LPPSVDRNHIQATITTDDVLVIEAPVNEPNYKAIKL 197
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90;
chaperone-protein binding complex, stress response;
HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Length = 92
Score = 33.7 bits (77), Expect = 0.005
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 35 DWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYK 80
++ + P V+T+ G+ K +V I+ E L V E +D Y
Sbjct: 6 EYYQKPEEVVVTVFAKGIPKQNVNIDFGEQI-LSVVIEVPGEDAYY 50
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta
strands, similar to P23, lacking LAST beta strand SEEN
in P23, protein degradation; NMR {Homo sapiens} SCOP:
b.15.1.3
Length = 114
Score = 33.4 bits (76), Expect = 0.009
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 35 DWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYK 80
DW +T + VITL I ++K+DV +E E + L + S + Y
Sbjct: 13 DWYQTESQVVITLMIKNVQKNDVNVEFSEKE-LSALVKLPSGEDYN 57
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.15.1.3
Length = 134
Score = 28.5 bits (63), Expect = 0.57
Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 35 DWMET-PTAHVITLDIPGMKKDDVKIEIEENKV 66
D E P + V+ + + + +D ++ E
Sbjct: 23 DSYEKGPDSVVVHVYVKEICRDTSRVLFREQDF 55
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 2.1
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 53 KKDDVKIEIEENKVLRVSGERKSDDYYKE-GVQREKWHRAERISGKFWRQFKMPMSADL 110
+ D + R ++ +++ + Q EK RI+ K F AD+
Sbjct: 100 ELD--AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK---AFYQQPDADI 153
>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle
ST genomics center for infectious disease, lyase; 1.80A
{Mycobacterium thermoresistibile} PDB: 3ome_A
Length = 279
Score = 26.8 bits (60), Expect = 2.9
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 99 WRQFKMPMSADLEHVKAHQENGVLRIT 125
WR+ P ++ + + IT
Sbjct: 8 WRRPSRPEQRTEMYIDYDVSDRIATIT 34
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase,
PSI-2, protein structure initiative; 1.50A {Streptomyces
avermitilis}
Length = 289
Score = 26.8 bits (60), Expect = 3.3
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 104 MPMSADLEHVKAHQENGVLRITV--PKL 129
M ++A E +KA + VL T P +
Sbjct: 1 MSLTASYETIKARLDGTVLSATFNAPPM 28
>3mmt_A Fructose-bisphosphate aldolase; ssgcid, structural genomics,
seattle structural GE center for infectious disease,
hydrolase; HET: 2FP; 2.35A {Bartonella henselae}
Length = 347
Score = 27.0 bits (60), Expect = 3.5
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 77 DYYKEGVQREKWHRAERISGKF---WRQFKMPMSADLEHVKAHQENGVLRITVPKL 129
DYY G + KW I + A + QE G++ I P++
Sbjct: 130 DYYTLGARFAKWRAVIAIDAQTLPTRGAISQNAQALARYAALCQEAGLVPIVEPEV 185
>2qap_A Fructose-1,6-bisphosphate aldolase; beta barrel,
fructose-1,6-bisphosphate teminal tail, lyase; 1.59A
{Leishmania mexicana} SCOP: c.1.10.1 PDB: 2qdg_A*
2qdh_A* 1epx_A 1f2j_A
Length = 391
Score = 26.6 bits (59), Expect = 3.7
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 78 YYKEGVQREKWHRAERISGK--FWRQFKMPMSADLEHVKAHQENGVLRITVPKL 129
YYK+G + KW +I + + Q +G++ I P++
Sbjct: 167 YYKKGCRFCKWRNVYKIQNGTVSESAVRFNAETLARYAILSQMSGLVPIVEPEV 220
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 26.2 bits (57), Expect = 4.9
Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 22/91 (24%)
Query: 12 LEQTTLKIPKRADNHQTLALATADWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSG 71
LE + + + L +A + E I +++P EI ++ +
Sbjct: 151 LELSD----TKQKGKKFLVIA-YEPFEN-----IAIELPPN-------EILFSENNDMDN 193
Query: 72 ERKSDDYYKEGVQREKWHRAERISGKFWRQF 102
D + K + IS ++ QF
Sbjct: 194 NNDGVDELNK-----KCTFWDAISKLYYVQF 219
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 6.4
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 76 DDYYKEGVQREKWHRAER 93
D Y ++ W+RA+
Sbjct: 1634 DLYKTSKAAQDVWNRADN 1651
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone,
beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2
Length = 125
Score = 24.9 bits (54), Expect = 9.8
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 32 ATADWMETPTAHVITLDIPGMKKDDVKIEIEENKV-LRVSGERKSDDYYKE 81
A+A W + I + K DV + E++K+ G + + E
Sbjct: 4 ASAKWYDRRDYVFIEFCVEDSK--DVNVNFEKSKLTFSCLGGSDNFKHLNE 52
>3s26_A Neutrophil gelatinase-associated lipocalin; beta-barrel,
siderophore binding protein, N-linked glycosyla
secreted, transport protein; HET: NAG BMA MAN; 1.80A
{Mus musculus} PDB: 2k23_A
Length = 190
Score = 25.1 bits (54), Expect = 10.0
Identities = 5/39 (12%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 87 KWHRAERISGKFWRQFKMPMSADLEHVKAHQENGVLRIT 125
+W+ ++ + + + QEN +T
Sbjct: 30 RWYVVGLAGNAVQKKTEGSFTMYSTIYEL-QENNSYNVT 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.130 0.374
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,453,115
Number of extensions: 139438
Number of successful extensions: 273
Number of sequences better than 10.0: 1
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 30
Length of query: 161
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 75
Effective length of database: 4,300,587
Effective search space: 322544025
Effective search space used: 322544025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.3 bits)