RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 041192
         (161 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 93.7 bits (232), Expect = 1e-25
 Identities = 61/136 (44%), Positives = 78/136 (57%), Gaps = 5/136 (3%)

Query: 7   NPFGVLEQTTLKIPKRADNHQTLALATADWMETPTAHVITLDIPGMKKDDVKIEIEENKV 66
           +PF         I          A A  DW ETP AHV   D+PG+KK++VK+E+E+  V
Sbjct: 18  DPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNV 77

Query: 67  LRVSGERKSDDYYKEGVQREKWHRAERISGKFWRQFKMPMSADLEHVKAHQENGVLRITV 126
           L VSGER  +       + +KWHR ER SGKF R+F++   A +E VKA  ENGVL +TV
Sbjct: 78  LVVSGERTKEKED----KNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTV 133

Query: 127 PKLAEEKKRQPNVINI 142
           PK AE KK +   I I
Sbjct: 134 PK-AEVKKPEVKAIQI 148


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 75.1 bits (184), Expect = 7e-19
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 7/109 (6%)

Query: 35  DWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEGVQREKWHRAERI 94
             +E      +   +PG+ K+D+ +    + +   +          E +   +       
Sbjct: 14  SIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPE---- 69

Query: 95  SGKFWRQFKMPMSADLEHVKAHQENGVLRITVPKLAEEKKRQPNVINID 143
             + +R  K+P +   E+  A  ENGVL + +PK     K+    INI+
Sbjct: 70  EEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKG---INIE 115


>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog,
          gst1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 32.6 bits (74), Expect = 0.005
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 35 DWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEG 82
          DW +T +  VITL I  ++K+DV +E  E ++  +      +DY  + 
Sbjct: 6  DWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKL 53


>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19,
          USP19 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 134

 Score = 28.8 bits (64), Expect = 0.15
 Identities = 4/31 (12%), Positives = 14/31 (45%)

Query: 36 WMETPTAHVITLDIPGMKKDDVKIEIEENKV 66
          + + P + V+ + +  + +D  ++   E   
Sbjct: 25 YEKGPDSVVVHVYVKEICRDTSRVLFREQDF 55


>d2p0va1 a.102.1.8 (A:39-481) Hypothetical protein BT3781
          {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 443

 Score = 27.8 bits (62), Expect = 0.55
 Identities = 6/20 (30%), Positives = 7/20 (35%)

Query: 33 TADWMETPTAHVITLDIPGM 52
          T  +       V T DI  M
Sbjct: 49 TVHFDGKEDTFVYTGDIHAM 68


>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 110

 Score = 26.2 bits (57), Expect = 1.1
 Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 1/51 (1%)

Query: 32 ATADWMETPTAHVITLDIPGMKKDDVKIEIEENKVLRVSGERKSDDYYKEG 82
          A+A W +      I   +   K  +V  E  +       G   +  +  E 
Sbjct: 4  ASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTF-SCLGGSDNFKHLNEI 53


>d2nvpa1 a.102.1.8 (A:2-427) Hypothetical protein CPF0428
          {Clostridium perfringens [TaxId: 1502]}
          Length = 426

 Score = 24.7 bits (54), Expect = 6.4
 Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 1/21 (4%)

Query: 32 ATADWMETPTAHVITLDIPGM 52
           T +  E   A VIT DIP M
Sbjct: 41 TTVEVSE-GDAFVITGDIPAM 60


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.130    0.374 

Gapped
Lambda     K      H
   0.267   0.0660    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 598,657
Number of extensions: 26366
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 8
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (22.8 bits)