BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041194
         (418 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
           Intracellular Mla Immune Receptors Defines A Minimal
           Functional Module For Triggering Cell Death
          Length = 115

 Score = 29.3 bits (64), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 6/57 (10%)

Query: 2   DEINCFTYESEKVIDTFINSITQQKSQSSCSKDICDALQGLQSRITDIKQRMQQHKH 58
           DE+   +Y  E V+D F+  +   KS  + +K      +GL  R T++ +++ +HKH
Sbjct: 62  DEVRELSYVIEDVVDKFLVQVDGIKSDDNNNK-----FKGLXKRTTELLKKV-KHKH 112


>pdb|1OLT|A Chain A, Coproporphyrinogen Iii Oxidase (Hemn) From Escherichia
           Coli Is A Radical Sam Enzyme
          Length = 457

 Score = 29.3 bits (64), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 221 YKGCPFLLLYHGSISLEENIGEAVQIPLVLRYFE-----YCMSPFCLKLCFL 267
           Y G P    Y  ++   E+ GE   +  V RY E     Y   PFC KLC+ 
Sbjct: 18  YSG-PRYTSYPTALEFSEDFGEQAFLQAVARYPERPLSLYVHIPFCHKLCYF 68


>pdb|3P3K|A Chain A, The Crystal Structure Of Translationally Controlled Tumor
           Protein (Tctp) Of Plasmodium Falciparum
          Length = 183

 Score = 28.9 bits (63), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 5/67 (7%)

Query: 69  TFEAKAGISSSSKSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128
            FE K+  +   K  +  G+ D  E  ++ +  G     ++ I+DS  L  TAF+ + Y 
Sbjct: 37  AFEVKS--NKRIKGNEDYGIADNSEDAVEGM--GADVEHVIDIVDSFQLTSTAFSKKEY- 91

Query: 129 SSYVKHY 135
           S+Y+K+Y
Sbjct: 92  SAYIKNY 98


>pdb|1HJS|A Chain A, Structure Of Two Fungal Beta-1,4-Galactanases: Searching
           For The Basis For Temperature And Ph Optimum.
 pdb|1HJS|B Chain B, Structure Of Two Fungal Beta-1,4-Galactanases: Searching
           For The Basis For Temperature And Ph Optimum.
 pdb|1HJS|C Chain C, Structure Of Two Fungal Beta-1,4-Galactanases: Searching
           For The Basis For Temperature And Ph Optimum.
 pdb|1HJS|D Chain D, Structure Of Two Fungal Beta-1,4-Galactanases: Searching
           For The Basis For Temperature And Ph Optimum.
 pdb|1HJU|A Chain A, Structure Of Two Fungal Beta-1,4-Galactanases: Searching
           For The Basis For Temperature And Ph Optimum.
 pdb|1HJU|B Chain B, Structure Of Two Fungal Beta-1,4-Galactanases: Searching
           For The Basis For Temperature And Ph Optimum.
 pdb|1HJU|C Chain C, Structure Of Two Fungal Beta-1,4-Galactanases: Searching
           For The Basis For Temperature And Ph Optimum.
 pdb|1HJU|D Chain D, Structure Of Two Fungal Beta-1,4-Galactanases: Searching
           For The Basis For Temperature And Ph Optimum
          Length = 332

 Score = 28.1 bits (61), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 387 VKCWWPQPVLRQKLREFEDKEQYGVQLYPY 416
            + WW   VL+Q   E  D +  GV  YP+
Sbjct: 187 TQNWWYTNVLKQGTLELSDFDMMGVSFYPF 216


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,374,919
Number of Sequences: 62578
Number of extensions: 501852
Number of successful extensions: 1127
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1123
Number of HSP's gapped (non-prelim): 7
length of query: 418
length of database: 14,973,337
effective HSP length: 101
effective length of query: 317
effective length of database: 8,652,959
effective search space: 2742988003
effective search space used: 2742988003
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)