Query 041194
Match_columns 418
No_of_seqs 323 out of 2591
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 04:42:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041194.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041194hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 7.6E-52 1.6E-56 444.1 27.7 371 2-389 62-555 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 1.8E-33 3.8E-38 270.4 10.0 204 88-295 1-284 (287)
3 PLN03210 Resistant to P. syrin 100.0 1.4E-29 3E-34 284.2 17.0 241 78-345 179-505 (1153)
4 PRK04841 transcriptional regul 98.8 7E-08 1.5E-12 107.2 16.9 235 80-342 11-332 (903)
5 TIGR02928 orc1/cdc6 family rep 98.8 4.1E-08 8.9E-13 97.7 11.6 113 81-200 13-138 (365)
6 PRK00411 cdc6 cell division co 98.8 4.4E-08 9.6E-13 98.5 11.6 115 80-200 27-147 (394)
7 cd01128 rho_factor Transcripti 98.6 1.1E-07 2.4E-12 89.1 6.9 92 106-200 16-112 (249)
8 PF13191 AAA_16: AAA ATPase do 98.6 9.5E-08 2.1E-12 85.2 5.9 46 84-129 1-47 (185)
9 PF13401 AAA_22: AAA domain; P 98.5 1.1E-07 2.3E-12 80.0 5.5 88 105-200 3-96 (131)
10 PTZ00202 tuzin; Provisional 98.5 3E-06 6.4E-11 84.1 14.1 104 79-198 258-368 (550)
11 PRK09376 rho transcription ter 98.4 5.4E-07 1.2E-11 88.6 6.4 85 107-200 170-265 (416)
12 TIGR03015 pepcterm_ATPase puta 98.4 4.4E-06 9.5E-11 79.4 12.3 86 106-201 43-133 (269)
13 PF01637 Arch_ATPase: Archaeal 98.3 1.6E-06 3.5E-11 79.9 8.5 55 85-143 1-55 (234)
14 PRK00080 ruvB Holliday junctio 98.3 1.4E-05 3.1E-10 78.4 13.8 220 81-318 23-311 (328)
15 COG1474 CDC6 Cdc6-related prot 98.2 7.8E-06 1.7E-10 81.0 10.7 111 82-200 16-132 (366)
16 TIGR00635 ruvB Holliday juncti 98.2 1.6E-05 3.5E-10 77.1 12.7 109 83-200 4-117 (305)
17 COG2909 MalT ATP-dependent tra 98.2 3.2E-05 6.9E-10 81.8 14.7 239 81-344 17-340 (894)
18 cd00009 AAA The AAA+ (ATPases 98.2 1.2E-05 2.6E-10 67.8 9.5 54 86-143 1-54 (151)
19 TIGR00767 rho transcription te 98.2 7.1E-06 1.5E-10 81.1 8.7 92 106-200 168-264 (415)
20 PTZ00112 origin recognition co 98.1 2.3E-05 4.9E-10 83.7 11.0 115 81-200 753-878 (1164)
21 KOG2543 Origin recognition com 98.0 4.2E-05 9E-10 74.2 10.8 113 81-200 4-124 (438)
22 PRK11331 5-methylcytosine-spec 97.9 5.6E-05 1.2E-09 76.0 10.1 70 82-157 174-243 (459)
23 PF05729 NACHT: NACHT domain 97.9 1.7E-05 3.8E-10 68.9 5.9 82 107-200 1-90 (166)
24 COG3903 Predicted ATPase [Gene 97.8 3.3E-05 7.1E-10 75.8 5.9 220 105-343 13-315 (414)
25 PRK13342 recombination factor 97.7 6.2E-05 1.3E-09 76.3 7.0 45 82-128 11-58 (413)
26 PRK08118 topology modulation p 97.6 3.6E-05 7.9E-10 67.9 3.1 36 107-142 2-38 (167)
27 COG2256 MGS1 ATPase related to 97.6 0.00015 3.3E-09 70.9 7.1 86 81-200 28-113 (436)
28 PF04665 Pox_A32: Poxvirus A32 97.6 0.00014 3.1E-09 67.5 6.3 35 107-143 14-48 (241)
29 smart00382 AAA ATPases associa 97.6 0.00039 8.4E-09 57.9 8.4 84 107-200 3-87 (148)
30 PF05496 RuvB_N: Holliday junc 97.5 0.00013 2.8E-09 66.6 5.6 56 80-137 21-79 (233)
31 CHL00095 clpC Clp protease ATP 97.5 0.00027 5.8E-09 77.8 8.4 46 82-129 178-223 (821)
32 PRK04195 replication factor C 97.5 0.00039 8.5E-09 71.9 9.0 49 81-129 12-62 (482)
33 PF05621 TniB: Bacterial TniB 97.4 0.002 4.4E-08 61.5 12.2 112 81-200 32-154 (302)
34 TIGR02639 ClpA ATP-dependent C 97.4 0.00044 9.6E-09 75.1 8.4 45 83-129 182-226 (731)
35 KOG2028 ATPase related to the 97.4 0.00039 8.5E-09 67.2 6.6 71 105-200 161-231 (554)
36 PRK07261 topology modulation p 97.4 0.00072 1.6E-08 59.9 7.8 22 108-129 2-23 (171)
37 PF00004 AAA: ATPase family as 97.3 0.00035 7.5E-09 58.3 5.4 21 109-129 1-21 (132)
38 PF13173 AAA_14: AAA domain 97.3 0.00041 8.9E-09 58.2 5.9 35 106-143 2-36 (128)
39 PRK10865 protein disaggregatio 97.3 0.00068 1.5E-08 74.7 9.0 45 82-128 177-221 (857)
40 PRK13341 recombination factor 97.3 0.00044 9.5E-09 74.4 7.1 52 81-136 26-80 (725)
41 PRK12402 replication factor C 97.3 0.0008 1.7E-08 66.0 8.5 45 82-128 14-58 (337)
42 cd01393 recA_like RecA is a b 97.3 0.0028 6.1E-08 58.4 11.2 97 99-200 12-123 (226)
43 TIGR03345 VI_ClpV1 type VI sec 97.2 0.00084 1.8E-08 73.8 8.4 45 82-128 186-230 (852)
44 PRK09361 radB DNA repair and r 97.2 0.0011 2.3E-08 61.3 8.0 98 97-200 14-116 (225)
45 TIGR03420 DnaA_homol_Hda DnaA 97.2 0.00065 1.4E-08 62.6 6.5 52 88-143 22-73 (226)
46 PRK08116 hypothetical protein; 97.2 0.002 4.3E-08 61.3 9.5 73 107-200 115-187 (268)
47 PRK05541 adenylylsulfate kinas 97.2 0.00065 1.4E-08 60.2 5.5 37 105-143 6-42 (176)
48 smart00763 AAA_PrkA PrkA AAA d 97.2 0.00045 9.8E-09 67.7 4.7 49 81-129 49-101 (361)
49 PRK12377 putative replication 97.2 0.00077 1.7E-08 63.3 6.1 72 106-200 101-172 (248)
50 TIGR01242 26Sp45 26S proteasom 97.2 0.00046 9.9E-09 68.8 4.8 52 83-136 122-184 (364)
51 TIGR03346 chaperone_ClpB ATP-d 97.1 0.0013 2.7E-08 72.8 8.6 45 82-128 172-216 (852)
52 PF13207 AAA_17: AAA domain; P 97.1 0.00034 7.4E-09 57.8 3.1 21 108-128 1-21 (121)
53 PRK12608 transcription termina 97.1 0.0014 3E-08 64.7 7.5 105 91-200 119-229 (380)
54 PHA02544 44 clamp loader, smal 97.1 0.0018 3.8E-08 63.1 8.3 48 80-128 18-65 (316)
55 PRK06893 DNA replication initi 97.1 0.0011 2.4E-08 61.6 6.5 36 106-143 39-74 (229)
56 PRK06696 uridine kinase; Valid 97.1 0.00081 1.8E-08 62.2 5.3 41 88-128 3-44 (223)
57 TIGR02237 recomb_radB DNA repa 97.1 0.0032 7E-08 57.4 9.2 91 104-200 10-106 (209)
58 PRK11034 clpA ATP-dependent Cl 97.1 0.0015 3.3E-08 70.6 8.0 44 83-128 186-229 (758)
59 PRK03992 proteasome-activating 97.1 0.0013 2.9E-08 66.0 7.2 45 84-128 132-187 (389)
60 PHA00729 NTP-binding motif con 97.0 0.0027 5.9E-08 58.4 8.4 33 94-128 7-39 (226)
61 cd01133 F1-ATPase_beta F1 ATP 97.0 0.0018 3.9E-08 61.4 7.2 91 106-200 69-172 (274)
62 cd01123 Rad51_DMC1_radA Rad51_ 97.0 0.0065 1.4E-07 56.4 10.7 94 104-200 17-124 (235)
63 PRK14961 DNA polymerase III su 97.0 0.0044 9.5E-08 61.7 10.1 47 81-128 14-60 (363)
64 KOG2227 Pre-initiation complex 97.0 0.0055 1.2E-07 61.3 10.3 115 80-200 147-265 (529)
65 PRK07667 uridine kinase; Provi 97.0 0.0012 2.6E-08 59.7 5.3 38 91-128 2-39 (193)
66 PRK14957 DNA polymerase III su 97.0 0.0031 6.8E-08 65.7 8.8 47 81-128 14-60 (546)
67 TIGR00602 rad24 checkpoint pro 96.9 0.0013 2.8E-08 69.5 6.0 49 80-128 81-132 (637)
68 PRK08727 hypothetical protein; 96.9 0.0028 6E-08 59.1 7.3 36 106-143 41-76 (233)
69 PLN03025 replication factor C 96.9 0.0049 1.1E-07 60.2 9.5 45 82-128 12-56 (319)
70 PRK14088 dnaA chromosomal repl 96.9 0.0035 7.7E-08 64.0 8.6 72 106-200 130-203 (440)
71 PRK07952 DNA replication prote 96.9 0.0058 1.3E-07 57.2 9.2 87 92-200 85-171 (244)
72 PRK14963 DNA polymerase III su 96.9 0.00082 1.8E-08 69.6 3.8 47 82-129 13-59 (504)
73 PRK14949 DNA polymerase III su 96.9 0.0045 9.8E-08 67.2 9.4 48 81-129 14-61 (944)
74 PRK00440 rfc replication facto 96.9 0.0062 1.4E-07 59.1 9.8 47 81-129 15-61 (319)
75 COG2255 RuvB Holliday junction 96.9 0.0012 2.6E-08 62.0 4.3 54 81-136 24-80 (332)
76 PRK14962 DNA polymerase III su 96.9 0.0056 1.2E-07 62.9 9.7 48 81-129 12-59 (472)
77 TIGR03689 pup_AAA proteasome A 96.8 0.0038 8.3E-08 64.4 8.3 46 83-128 182-238 (512)
78 PRK08233 hypothetical protein; 96.8 0.0049 1.1E-07 54.6 8.1 23 106-128 3-25 (182)
79 PRK07003 DNA polymerase III su 96.8 0.0065 1.4E-07 64.9 9.9 47 81-128 14-60 (830)
80 PRK00149 dnaA chromosomal repl 96.8 0.0043 9.2E-08 63.7 8.1 92 85-200 125-220 (450)
81 PTZ00088 adenylate kinase 1; P 96.7 0.0029 6.2E-08 58.8 5.9 20 109-128 9-28 (229)
82 PF05673 DUF815: Protein of un 96.7 0.0047 1E-07 57.3 7.1 50 79-128 23-74 (249)
83 COG0572 Udk Uridine kinase [Nu 96.7 0.004 8.7E-08 56.7 6.6 80 104-192 6-85 (218)
84 PTZ00454 26S protease regulato 96.7 0.0073 1.6E-07 60.7 9.1 46 83-128 145-201 (398)
85 PRK14958 DNA polymerase III su 96.7 0.0078 1.7E-07 62.5 9.5 47 81-128 14-60 (509)
86 PRK05564 DNA polymerase III su 96.7 0.012 2.7E-07 57.2 10.4 60 83-143 4-67 (313)
87 TIGR00362 DnaA chromosomal rep 96.7 0.0055 1.2E-07 62.0 8.1 71 106-200 136-208 (405)
88 PF00308 Bac_DnaA: Bacterial d 96.7 0.0051 1.1E-07 56.8 7.1 91 86-200 12-106 (219)
89 PRK08181 transposase; Validate 96.7 0.0021 4.5E-08 61.1 4.5 35 107-143 107-141 (269)
90 cd01120 RecA-like_NTPases RecA 96.7 0.0085 1.8E-07 51.5 8.1 39 108-150 1-39 (165)
91 COG1484 DnaC DNA replication p 96.7 0.0023 4.9E-08 60.4 4.8 73 105-200 104-176 (254)
92 PRK14960 DNA polymerase III su 96.7 0.0094 2E-07 62.9 9.6 47 81-128 13-59 (702)
93 TIGR01359 UMP_CMP_kin_fam UMP- 96.6 0.0041 8.8E-08 55.4 6.1 21 108-128 1-21 (183)
94 PRK15455 PrkA family serine pr 96.6 0.0023 5E-08 66.2 5.0 46 83-128 76-125 (644)
95 PRK05896 DNA polymerase III su 96.6 0.0053 1.1E-07 64.3 7.5 47 81-128 14-60 (605)
96 TIGR03499 FlhF flagellar biosy 96.6 0.009 2E-07 57.3 8.7 86 105-199 193-280 (282)
97 cd01394 radB RadB. The archaea 96.6 0.0095 2.1E-07 54.7 8.6 96 97-200 10-112 (218)
98 PF01695 IstB_IS21: IstB-like 96.6 0.0017 3.7E-08 57.8 3.5 36 106-143 47-82 (178)
99 PF00485 PRK: Phosphoribulokin 96.6 0.0094 2E-07 53.8 8.3 83 108-195 1-87 (194)
100 COG1618 Predicted nucleotide k 96.6 0.0016 3.4E-08 56.2 2.9 35 106-142 5-40 (179)
101 PRK12323 DNA polymerase III su 96.6 0.01 2.2E-07 62.5 9.5 47 81-128 14-60 (700)
102 PRK14955 DNA polymerase III su 96.6 0.012 2.7E-07 59.2 9.9 48 81-129 14-61 (397)
103 PRK04301 radA DNA repair and r 96.6 0.015 3.3E-07 56.8 10.2 103 95-200 91-207 (317)
104 PF00448 SRP54: SRP54-type pro 96.6 0.0055 1.2E-07 55.5 6.5 57 106-166 1-58 (196)
105 PRK09270 nucleoside triphospha 96.6 0.012 2.5E-07 54.7 8.9 26 103-128 30-55 (229)
106 PTZ00361 26 proteosome regulat 96.6 0.0045 9.7E-08 62.9 6.4 51 84-136 184-245 (438)
107 cd00983 recA RecA is a bacter 96.6 0.008 1.7E-07 58.5 7.9 88 104-200 53-142 (325)
108 COG0466 Lon ATP-dependent Lon 96.5 0.0024 5.1E-08 66.9 4.4 102 81-200 321-426 (782)
109 TIGR02903 spore_lon_C ATP-depe 96.5 0.016 3.6E-07 61.6 10.6 49 81-131 152-200 (615)
110 KOG2004 Mitochondrial ATP-depe 96.5 0.0045 9.7E-08 64.8 6.0 68 81-155 409-480 (906)
111 PF08423 Rad51: Rad51; InterP 96.5 0.0071 1.5E-07 57.1 7.0 103 95-200 27-142 (256)
112 PRK08691 DNA polymerase III su 96.5 0.014 2.9E-07 62.1 9.7 47 81-128 14-60 (709)
113 PRK14969 DNA polymerase III su 96.5 0.016 3.5E-07 60.5 10.2 47 81-128 14-60 (527)
114 PTZ00301 uridine kinase; Provi 96.5 0.0024 5.2E-08 58.4 3.6 23 106-128 3-25 (210)
115 PRK14956 DNA polymerase III su 96.5 0.0093 2E-07 60.9 8.1 47 81-128 16-62 (484)
116 TIGR00763 lon ATP-dependent pr 96.5 0.0084 1.8E-07 65.7 8.2 53 82-136 319-375 (775)
117 PRK09354 recA recombinase A; P 96.4 0.012 2.7E-07 57.7 8.5 97 95-200 48-147 (349)
118 PRK06526 transposase; Provisio 96.4 0.0022 4.8E-08 60.5 3.2 24 106-129 98-121 (254)
119 PRK14970 DNA polymerase III su 96.4 0.017 3.8E-07 57.5 9.7 47 81-128 15-61 (367)
120 TIGR01243 CDC48 AAA family ATP 96.4 0.009 1.9E-07 65.1 8.2 46 83-128 178-234 (733)
121 PF13238 AAA_18: AAA domain; P 96.4 0.0024 5.1E-08 52.9 2.8 20 109-128 1-20 (129)
122 TIGR01241 FtsH_fam ATP-depende 96.4 0.014 3.1E-07 60.5 9.2 50 80-129 52-111 (495)
123 PRK08939 primosomal protein Dn 96.4 0.016 3.5E-07 56.2 8.8 90 87-200 135-226 (306)
124 PRK09183 transposase/IS protei 96.4 0.016 3.4E-07 54.9 8.6 22 107-128 103-124 (259)
125 PRK07994 DNA polymerase III su 96.4 0.0099 2.1E-07 63.1 7.8 47 81-128 14-60 (647)
126 cd02025 PanK Pantothenate kina 96.4 0.013 2.8E-07 54.1 7.8 74 108-189 1-76 (220)
127 PRK14087 dnaA chromosomal repl 96.4 0.012 2.5E-07 60.4 8.1 74 105-200 140-215 (450)
128 TIGR02012 tigrfam_recA protein 96.4 0.014 3E-07 56.8 8.2 88 104-200 53-142 (321)
129 TIGR00064 ftsY signal recognit 96.4 0.023 5.1E-07 54.1 9.7 92 104-201 70-164 (272)
130 PRK12422 chromosomal replicati 96.4 0.0081 1.8E-07 61.3 6.9 71 106-200 141-211 (445)
131 COG0563 Adk Adenylate kinase a 96.3 0.0085 1.8E-07 53.4 6.1 22 108-129 2-23 (178)
132 TIGR02239 recomb_RAD51 DNA rep 96.3 0.015 3.3E-07 56.7 8.4 105 93-200 83-200 (316)
133 cd03115 SRP The signal recogni 96.3 0.01 2.2E-07 52.4 6.6 21 108-128 2-22 (173)
134 TIGR02236 recomb_radA DNA repa 96.3 0.022 4.8E-07 55.4 9.5 65 97-164 86-154 (310)
135 PRK05480 uridine/cytidine kina 96.3 0.0036 7.7E-08 57.2 3.7 24 105-128 5-28 (209)
136 TIGR02881 spore_V_K stage V sp 96.3 0.0051 1.1E-07 58.3 4.9 45 84-128 7-64 (261)
137 TIGR00235 udk uridine kinase. 96.3 0.0035 7.7E-08 57.2 3.7 25 104-128 4-28 (207)
138 KOG0991 Replication factor C, 96.3 0.021 4.6E-07 52.3 8.4 46 81-128 25-70 (333)
139 KOG0733 Nuclear AAA ATPase (VC 96.3 0.013 2.8E-07 60.5 7.8 93 82-200 189-291 (802)
140 PRK14954 DNA polymerase III su 96.3 0.026 5.6E-07 59.9 10.3 48 81-129 14-61 (620)
141 TIGR02880 cbbX_cfxQ probable R 96.3 0.021 4.5E-07 54.9 8.8 45 84-128 23-80 (284)
142 PRK04040 adenylate kinase; Pro 96.3 0.016 3.6E-07 52.0 7.6 23 106-128 2-24 (188)
143 PRK14950 DNA polymerase III su 96.2 0.011 2.3E-07 62.7 7.4 47 81-128 14-60 (585)
144 PRK14964 DNA polymerase III su 96.2 0.023 5E-07 58.5 9.4 47 81-128 11-57 (491)
145 PLN03186 DNA repair protein RA 96.2 0.041 9E-07 54.1 10.8 105 93-200 110-227 (342)
146 PRK06921 hypothetical protein; 96.2 0.019 4.2E-07 54.5 8.3 37 105-143 116-153 (266)
147 PRK00771 signal recognition pa 96.2 0.03 6.4E-07 57.0 10.0 91 105-203 94-187 (437)
148 PLN00020 ribulose bisphosphate 96.2 0.02 4.4E-07 56.3 8.4 31 104-136 146-176 (413)
149 PRK06645 DNA polymerase III su 96.2 0.03 6.5E-07 58.0 10.2 48 81-129 19-66 (507)
150 PRK10867 signal recognition pa 96.2 0.025 5.4E-07 57.4 9.4 24 105-128 99-122 (433)
151 TIGR00959 ffh signal recogniti 96.2 0.031 6.8E-07 56.6 10.1 24 105-128 98-121 (428)
152 PRK06547 hypothetical protein; 96.2 0.0078 1.7E-07 53.3 5.1 26 104-129 13-38 (172)
153 CHL00176 ftsH cell division pr 96.2 0.0067 1.4E-07 64.6 5.4 94 81-200 181-284 (638)
154 PRK06835 DNA replication prote 96.2 0.018 3.8E-07 56.5 7.9 35 107-143 184-218 (329)
155 PRK14951 DNA polymerase III su 96.2 0.025 5.3E-07 59.9 9.5 47 81-128 14-60 (618)
156 PRK06762 hypothetical protein; 96.2 0.0045 9.8E-08 54.2 3.5 23 106-128 2-24 (166)
157 PF13671 AAA_33: AAA domain; P 96.2 0.004 8.7E-08 52.8 3.1 21 108-128 1-21 (143)
158 COG1419 FlhF Flagellar GTP-bin 96.2 0.038 8.2E-07 54.9 10.1 86 105-200 202-290 (407)
159 PRK14722 flhF flagellar biosyn 96.1 0.019 4E-07 57.1 7.9 86 105-200 136-224 (374)
160 PRK05642 DNA replication initi 96.1 0.015 3.3E-07 54.2 6.9 36 106-143 45-80 (234)
161 cd02019 NK Nucleoside/nucleoti 96.1 0.0047 1E-07 45.8 2.8 22 108-129 1-22 (69)
162 TIGR02238 recomb_DMC1 meiotic 96.1 0.056 1.2E-06 52.6 10.8 101 97-200 87-200 (313)
163 PRK06002 fliI flagellum-specif 96.1 0.026 5.7E-07 57.2 8.7 90 106-200 165-263 (450)
164 TIGR00390 hslU ATP-dependent p 96.1 0.02 4.3E-07 57.4 7.7 52 83-136 12-75 (441)
165 PRK10787 DNA-binding ATP-depen 96.1 0.025 5.4E-07 61.8 9.2 54 81-136 320-377 (784)
166 PRK03839 putative kinase; Prov 96.1 0.0047 1E-07 54.9 3.1 21 108-128 2-22 (180)
167 COG0468 RecA RecA/RadA recombi 96.0 0.037 7.9E-07 52.8 9.1 96 97-200 51-150 (279)
168 KOG0744 AAA+-type ATPase [Post 96.0 0.026 5.7E-07 54.1 7.9 80 105-200 176-259 (423)
169 COG4608 AppF ABC-type oligopep 96.0 0.03 6.5E-07 52.6 8.3 92 105-200 38-136 (268)
170 PLN03187 meiotic recombination 96.0 0.065 1.4E-06 52.8 11.0 100 98-200 118-230 (344)
171 PRK07940 DNA polymerase III su 96.0 0.032 7E-07 56.0 9.0 46 83-128 5-58 (394)
172 TIGR01243 CDC48 AAA family ATP 96.0 0.034 7.3E-07 60.7 9.8 47 82-128 452-509 (733)
173 PRK05201 hslU ATP-dependent pr 96.0 0.019 4.1E-07 57.6 7.2 53 82-136 14-78 (443)
174 TIGR02639 ClpA ATP-dependent C 96.0 0.014 3.1E-07 63.5 6.9 47 82-128 453-506 (731)
175 PF12775 AAA_7: P-loop contain 96.0 0.017 3.7E-07 55.0 6.7 34 92-128 22-55 (272)
176 PRK06217 hypothetical protein; 96.0 0.015 3.3E-07 51.8 6.0 22 108-129 3-24 (183)
177 TIGR00150 HI0065_YjeE ATPase, 96.0 0.013 2.7E-07 49.5 5.0 40 90-129 6-45 (133)
178 PRK08972 fliI flagellum-specif 96.0 0.024 5.3E-07 57.2 7.8 89 106-200 162-261 (444)
179 PRK11889 flhF flagellar biosyn 95.9 0.043 9.4E-07 54.7 9.4 24 105-128 240-263 (436)
180 PRK08903 DnaA regulatory inact 95.9 0.013 2.7E-07 54.3 5.4 43 86-129 22-65 (227)
181 TIGR00554 panK_bact pantothena 95.9 0.038 8.3E-07 53.1 8.8 79 104-192 60-142 (290)
182 TIGR01360 aden_kin_iso1 adenyl 95.9 0.0068 1.5E-07 54.0 3.4 24 105-128 2-25 (188)
183 COG0542 clpA ATP-binding subun 95.9 0.01 2.3E-07 63.6 5.2 46 81-128 168-213 (786)
184 TIGR03877 thermo_KaiC_1 KaiC d 95.9 0.057 1.2E-06 50.3 9.6 58 96-159 11-68 (237)
185 PRK14952 DNA polymerase III su 95.9 0.049 1.1E-06 57.4 10.0 46 82-128 12-57 (584)
186 PRK05439 pantothenate kinase; 95.9 0.05 1.1E-06 52.7 9.3 82 103-192 83-166 (311)
187 PF00158 Sigma54_activat: Sigm 95.9 0.039 8.5E-07 48.6 8.0 45 85-129 1-45 (168)
188 PRK00131 aroK shikimate kinase 95.9 0.0076 1.7E-07 52.8 3.5 23 106-128 4-26 (175)
189 COG1428 Deoxynucleoside kinase 95.8 0.014 3.1E-07 52.6 5.0 24 106-129 4-27 (216)
190 PTZ00035 Rad51 protein; Provis 95.8 0.12 2.7E-06 50.8 12.1 104 94-200 106-222 (337)
191 PRK14974 cell division protein 95.8 0.035 7.5E-07 54.5 8.1 55 105-165 139-196 (336)
192 PRK13531 regulatory ATPase Rav 95.8 0.012 2.7E-07 59.9 5.1 42 83-128 20-61 (498)
193 cd01135 V_A-ATPase_B V/A-type 95.8 0.032 7E-07 52.9 7.6 94 106-201 69-176 (276)
194 cd02023 UMPK Uridine monophosp 95.8 0.0064 1.4E-07 54.9 2.7 21 108-128 1-21 (198)
195 PF08433 KTI12: Chromatin asso 95.7 0.012 2.7E-07 55.9 4.5 22 107-128 2-23 (270)
196 PRK05703 flhF flagellar biosyn 95.7 0.048 1E-06 55.4 9.0 86 106-200 221-308 (424)
197 TIGR02322 phosphon_PhnN phosph 95.7 0.0086 1.9E-07 53.1 3.3 23 107-129 2-24 (179)
198 PRK14953 DNA polymerase III su 95.7 0.067 1.5E-06 55.3 10.2 47 81-128 14-60 (486)
199 PRK00625 shikimate kinase; Pro 95.7 0.0084 1.8E-07 53.2 3.1 21 108-128 2-22 (173)
200 PRK12723 flagellar biosynthesi 95.7 0.063 1.4E-06 53.7 9.6 87 105-200 173-263 (388)
201 PRK10865 protein disaggregatio 95.7 0.045 9.8E-07 60.6 9.4 47 82-128 567-620 (857)
202 PRK08149 ATP synthase SpaL; Va 95.7 0.03 6.5E-07 56.6 7.3 89 106-200 151-250 (428)
203 PF00006 ATP-synt_ab: ATP synt 95.7 0.014 3E-07 53.6 4.5 86 107-200 16-114 (215)
204 PRK12724 flagellar biosynthesi 95.7 0.029 6.3E-07 56.3 7.0 23 106-128 223-245 (432)
205 PRK10463 hydrogenase nickel in 95.7 0.057 1.2E-06 51.7 8.7 89 104-200 102-193 (290)
206 PRK14738 gmk guanylate kinase; 95.6 0.011 2.3E-07 54.1 3.6 31 98-128 5-35 (206)
207 COG0470 HolB ATPase involved i 95.6 0.069 1.5E-06 51.8 9.6 46 84-129 2-47 (325)
208 PRK14531 adenylate kinase; Pro 95.6 0.03 6.4E-07 50.0 6.4 22 107-128 3-24 (183)
209 cd01132 F1_ATPase_alpha F1 ATP 95.6 0.045 9.8E-07 51.9 7.9 88 106-201 69-171 (274)
210 TIGR00678 holB DNA polymerase 95.6 0.083 1.8E-06 47.2 9.3 34 94-128 3-36 (188)
211 PRK14528 adenylate kinase; Pro 95.6 0.03 6.4E-07 50.2 6.4 22 107-128 2-23 (186)
212 PRK04296 thymidine kinase; Pro 95.6 0.015 3.3E-07 52.3 4.5 85 107-200 3-87 (190)
213 cd01121 Sms Sms (bacterial rad 95.6 0.061 1.3E-06 53.6 9.1 98 93-200 69-167 (372)
214 PRK13947 shikimate kinase; Pro 95.6 0.0097 2.1E-07 52.3 3.1 21 108-128 3-23 (171)
215 cd02024 NRK1 Nicotinamide ribo 95.6 0.0086 1.9E-07 53.7 2.7 22 108-129 1-22 (187)
216 PRK12597 F0F1 ATP synthase sub 95.6 0.034 7.3E-07 56.7 7.2 92 106-200 143-246 (461)
217 PRK14086 dnaA chromosomal repl 95.6 0.045 9.9E-07 57.5 8.2 71 106-200 314-386 (617)
218 TIGR03263 guanyl_kin guanylate 95.6 0.01 2.3E-07 52.5 3.2 22 107-128 2-23 (180)
219 PRK08927 fliI flagellum-specif 95.5 0.05 1.1E-06 55.1 8.3 90 105-200 157-257 (442)
220 TIGR03881 KaiC_arch_4 KaiC dom 95.5 0.12 2.5E-06 47.8 10.3 38 104-143 18-55 (229)
221 TIGR01351 adk adenylate kinase 95.5 0.035 7.6E-07 50.7 6.7 20 109-128 2-21 (210)
222 PRK06067 flagellar accessory p 95.5 0.071 1.5E-06 49.5 8.8 98 96-200 15-129 (234)
223 PRK00889 adenylylsulfate kinas 95.5 0.013 2.9E-07 51.7 3.7 24 105-128 3-26 (175)
224 PF00625 Guanylate_kin: Guanyl 95.5 0.017 3.8E-07 51.5 4.5 36 106-143 2-37 (183)
225 PRK00279 adk adenylate kinase; 95.5 0.034 7.4E-07 51.0 6.5 21 108-128 2-22 (215)
226 cd02020 CMPK Cytidine monophos 95.5 0.01 2.2E-07 50.5 2.7 21 108-128 1-21 (147)
227 cd01131 PilT Pilus retraction 95.5 0.018 3.8E-07 52.2 4.4 82 107-201 2-84 (198)
228 CHL00181 cbbX CbbX; Provisiona 95.5 0.022 4.7E-07 54.8 5.2 46 83-128 23-81 (287)
229 cd02028 UMPK_like Uridine mono 95.5 0.01 2.3E-07 52.8 2.8 21 108-128 1-21 (179)
230 cd00227 CPT Chloramphenicol (C 95.5 0.013 2.8E-07 51.9 3.4 22 107-128 3-24 (175)
231 TIGR03346 chaperone_ClpB ATP-d 95.4 0.069 1.5E-06 59.2 9.7 47 82-128 564-617 (852)
232 PRK12726 flagellar biosynthesi 95.4 0.062 1.4E-06 53.3 8.3 89 104-200 204-294 (407)
233 PRK10536 hypothetical protein; 95.4 0.033 7.1E-07 52.3 6.1 57 80-140 52-108 (262)
234 PRK12727 flagellar biosynthesi 95.4 0.048 1.1E-06 56.3 7.7 24 105-128 349-372 (559)
235 TIGR01425 SRP54_euk signal rec 95.4 0.083 1.8E-06 53.4 9.3 24 105-128 99-122 (429)
236 PRK07764 DNA polymerase III su 95.4 0.081 1.8E-06 58.0 9.8 47 82-129 14-60 (824)
237 KOG0735 AAA+-type ATPase [Post 95.4 0.054 1.2E-06 57.0 7.9 96 81-200 406-503 (952)
238 PF07726 AAA_3: ATPase family 95.4 0.015 3.2E-07 48.6 3.1 28 109-138 2-29 (131)
239 PRK14723 flhF flagellar biosyn 95.3 0.12 2.5E-06 55.9 10.5 86 106-200 185-272 (767)
240 cd02021 GntK Gluconate kinase 95.3 0.012 2.7E-07 50.4 2.7 22 108-129 1-22 (150)
241 TIGR02640 gas_vesic_GvpN gas v 95.3 0.048 1E-06 51.7 7.0 56 90-156 9-64 (262)
242 PRK15453 phosphoribulokinase; 95.3 0.096 2.1E-06 49.9 8.8 81 105-190 4-89 (290)
243 cd00071 GMPK Guanosine monopho 95.3 0.015 3.2E-07 49.5 3.1 21 108-128 1-21 (137)
244 PF14516 AAA_35: AAA-like doma 95.3 0.19 4.2E-06 49.3 11.4 115 79-200 7-136 (331)
245 PF01583 APS_kinase: Adenylyls 95.3 0.018 3.9E-07 49.9 3.7 23 106-128 2-24 (156)
246 PRK09099 type III secretion sy 95.3 0.077 1.7E-06 53.9 8.7 91 105-200 162-262 (441)
247 PRK03846 adenylylsulfate kinas 95.3 0.017 3.8E-07 52.2 3.7 25 104-128 22-46 (198)
248 PLN02318 phosphoribulokinase/u 95.3 0.023 4.9E-07 59.3 4.9 33 96-128 55-87 (656)
249 KOG1969 DNA replication checkp 95.3 0.056 1.2E-06 57.1 7.7 55 104-165 324-378 (877)
250 PRK06936 type III secretion sy 95.3 0.073 1.6E-06 53.9 8.4 88 105-200 161-261 (439)
251 PRK05922 type III secretion sy 95.3 0.083 1.8E-06 53.5 8.7 89 106-200 157-256 (434)
252 PRK13949 shikimate kinase; Pro 95.3 0.016 3.4E-07 51.2 3.2 21 108-128 3-23 (169)
253 PRK00300 gmk guanylate kinase; 95.2 0.017 3.6E-07 52.4 3.5 23 106-128 5-27 (205)
254 PF07728 AAA_5: AAA domain (dy 95.2 0.014 3E-07 49.4 2.8 43 109-158 2-44 (139)
255 PRK14965 DNA polymerase III su 95.2 0.11 2.3E-06 55.1 9.9 47 81-128 14-60 (576)
256 PRK10751 molybdopterin-guanine 95.2 0.018 3.9E-07 50.9 3.4 24 105-128 5-28 (173)
257 COG1222 RPT1 ATP-dependent 26S 95.2 0.029 6.2E-07 54.6 5.0 52 83-136 151-213 (406)
258 COG1936 Predicted nucleotide k 95.2 0.015 3.2E-07 50.9 2.7 20 108-127 2-21 (180)
259 TIGR00764 lon_rel lon-related 95.2 0.049 1.1E-06 57.9 7.3 76 81-165 16-92 (608)
260 COG0542 clpA ATP-binding subun 95.2 0.047 1E-06 58.7 7.1 103 81-200 489-602 (786)
261 PF00910 RNA_helicase: RNA hel 95.2 0.013 2.7E-07 47.6 2.2 20 109-128 1-20 (107)
262 PRK14529 adenylate kinase; Pro 95.2 0.075 1.6E-06 49.1 7.6 90 109-208 3-93 (223)
263 TIGR02397 dnaX_nterm DNA polym 95.2 0.031 6.7E-07 55.2 5.4 47 81-128 12-58 (355)
264 TIGR01041 ATP_syn_B_arch ATP s 95.2 0.062 1.3E-06 54.8 7.6 93 106-200 141-247 (458)
265 PRK13975 thymidylate kinase; P 95.2 0.018 3.9E-07 51.8 3.4 22 107-128 3-24 (196)
266 TIGR03305 alt_F1F0_F1_bet alte 95.1 0.047 1E-06 55.4 6.6 92 106-200 138-241 (449)
267 TIGR03345 VI_ClpV1 type VI sec 95.1 0.036 7.8E-07 61.2 6.2 47 82-128 565-618 (852)
268 PF00154 RecA: recA bacterial 95.1 0.045 9.8E-07 53.2 6.2 88 104-200 51-140 (322)
269 PRK14526 adenylate kinase; Pro 95.1 0.039 8.4E-07 50.6 5.5 20 109-128 3-22 (211)
270 COG1102 Cmk Cytidylate kinase 95.1 0.016 3.4E-07 50.1 2.6 22 108-129 2-23 (179)
271 COG1703 ArgK Putative periplas 95.1 0.028 6E-07 53.4 4.5 68 92-161 37-104 (323)
272 CHL00195 ycf46 Ycf46; Provisio 95.1 0.058 1.3E-06 55.7 7.3 47 82-128 227-281 (489)
273 PRK09280 F0F1 ATP synthase sub 95.1 0.058 1.2E-06 55.0 7.1 92 106-200 144-247 (463)
274 PRK13765 ATP-dependent proteas 95.1 0.046 9.9E-07 58.2 6.7 77 80-165 28-105 (637)
275 PTZ00185 ATPase alpha subunit; 95.1 0.092 2E-06 53.9 8.4 91 106-200 189-298 (574)
276 TIGR03498 FliI_clade3 flagella 95.1 0.066 1.4E-06 54.1 7.5 90 106-200 140-239 (418)
277 cd00464 SK Shikimate kinase (S 95.1 0.018 3.8E-07 49.5 3.0 20 109-128 2-21 (154)
278 PF03205 MobB: Molybdopterin g 95.1 0.019 4E-07 49.1 3.1 35 107-143 1-36 (140)
279 TIGR03575 selen_PSTK_euk L-ser 95.1 0.084 1.8E-06 51.8 8.0 20 109-128 2-21 (340)
280 PRK05688 fliI flagellum-specif 95.1 0.092 2E-06 53.4 8.4 89 106-200 168-267 (451)
281 PRK10078 ribose 1,5-bisphospho 95.1 0.019 4.1E-07 51.4 3.2 23 107-129 3-25 (186)
282 PRK14721 flhF flagellar biosyn 95.1 0.12 2.7E-06 52.2 9.3 24 105-128 190-213 (420)
283 cd01672 TMPK Thymidine monopho 95.0 0.037 7.9E-07 49.5 5.1 22 107-128 1-22 (200)
284 KOG3347 Predicted nucleotide k 95.0 0.041 8.9E-07 46.9 4.8 69 106-190 7-75 (176)
285 PRK13948 shikimate kinase; Pro 95.0 0.023 4.9E-07 50.8 3.6 24 105-128 9-32 (182)
286 PF08477 Miro: Miro-like prote 95.0 0.022 4.9E-07 46.4 3.3 22 109-130 2-23 (119)
287 cd02029 PRK_like Phosphoribulo 95.0 0.085 1.9E-06 49.8 7.5 81 108-192 1-85 (277)
288 PF03308 ArgK: ArgK protein; 95.0 0.029 6.3E-07 52.4 4.3 65 91-157 14-78 (266)
289 cd01136 ATPase_flagellum-secre 95.0 0.14 3E-06 50.0 9.2 90 106-201 69-169 (326)
290 CHL00095 clpC Clp protease ATP 95.0 0.095 2E-06 57.9 9.0 47 82-128 508-561 (821)
291 PRK07721 fliI flagellum-specif 95.0 0.093 2E-06 53.4 8.3 25 105-129 157-181 (438)
292 TIGR01040 V-ATPase_V1_B V-type 95.0 0.08 1.7E-06 53.7 7.7 93 106-200 141-256 (466)
293 PRK05057 aroK shikimate kinase 95.0 0.023 5E-07 50.3 3.5 23 106-128 4-26 (172)
294 PRK14530 adenylate kinase; Pro 94.9 0.021 4.5E-07 52.4 3.2 22 107-128 4-25 (215)
295 COG0467 RAD55 RecA-superfamily 94.9 0.03 6.4E-07 53.0 4.3 52 104-161 21-72 (260)
296 PRK07594 type III secretion sy 94.9 0.083 1.8E-06 53.5 7.6 89 106-200 155-254 (433)
297 PRK08084 DNA replication initi 94.9 0.04 8.7E-07 51.3 5.1 36 106-143 45-80 (235)
298 PRK14948 DNA polymerase III su 94.9 0.13 2.8E-06 54.8 9.5 48 81-129 14-61 (620)
299 TIGR01313 therm_gnt_kin carboh 94.9 0.017 3.8E-07 50.3 2.5 20 109-128 1-20 (163)
300 COG0714 MoxR-like ATPases [Gen 94.9 0.066 1.4E-06 52.5 6.8 66 82-158 23-88 (329)
301 PRK12678 transcription termina 94.9 0.043 9.4E-07 56.9 5.5 103 94-200 405-512 (672)
302 COG0464 SpoVK ATPases of the A 94.9 0.067 1.4E-06 55.6 7.1 92 83-200 242-344 (494)
303 COG2607 Predicted ATPase (AAA+ 94.9 0.094 2E-06 48.4 7.1 57 80-138 57-115 (287)
304 PRK14737 gmk guanylate kinase; 94.9 0.029 6.4E-07 50.3 3.9 24 105-128 3-26 (186)
305 PRK14959 DNA polymerase III su 94.9 0.13 2.9E-06 54.3 9.3 46 82-128 15-60 (624)
306 PRK12339 2-phosphoglycerate ki 94.9 0.026 5.7E-07 51.1 3.6 23 106-128 3-25 (197)
307 PRK13946 shikimate kinase; Pro 94.8 0.025 5.5E-07 50.5 3.4 23 106-128 10-32 (184)
308 KOG1970 Checkpoint RAD17-RFC c 94.8 0.1 2.2E-06 53.4 7.9 40 89-128 88-132 (634)
309 COG3899 Predicted ATPase [Gene 94.8 0.036 7.7E-07 61.2 5.2 45 84-128 1-46 (849)
310 PRK10416 signal recognition pa 94.8 0.12 2.5E-06 50.5 8.2 24 105-128 113-136 (318)
311 cd01878 HflX HflX subfamily. 94.8 0.12 2.5E-06 46.7 7.8 26 105-130 40-65 (204)
312 PF08298 AAA_PrkA: PrkA AAA do 94.8 0.039 8.5E-07 53.9 4.9 53 81-135 59-115 (358)
313 PRK05563 DNA polymerase III su 94.8 0.2 4.2E-06 52.9 10.5 47 81-128 14-60 (559)
314 PRK11823 DNA repair protein Ra 94.8 0.19 4.2E-06 51.4 10.1 98 93-200 67-165 (446)
315 TIGR03497 FliI_clade2 flagella 94.8 0.089 1.9E-06 53.1 7.4 90 105-200 136-236 (413)
316 PRK04182 cytidylate kinase; Pr 94.8 0.028 6E-07 49.6 3.5 21 108-128 2-22 (180)
317 PRK04328 hypothetical protein; 94.8 0.13 2.9E-06 48.3 8.3 48 97-148 14-61 (249)
318 PF14532 Sigma54_activ_2: Sigm 94.8 0.017 3.8E-07 48.9 2.1 44 86-129 1-44 (138)
319 cd02027 APSK Adenosine 5'-phos 94.8 0.022 4.8E-07 49.1 2.7 21 108-128 1-21 (149)
320 PRK14527 adenylate kinase; Pro 94.8 0.028 6.1E-07 50.5 3.5 24 105-128 5-28 (191)
321 PRK09435 membrane ATPase/prote 94.8 0.049 1.1E-06 53.3 5.4 37 92-128 42-78 (332)
322 TIGR01817 nifA Nif-specific re 94.7 0.11 2.3E-06 54.7 8.3 50 80-129 193-242 (534)
323 PRK06647 DNA polymerase III su 94.7 0.2 4.4E-06 52.7 10.3 47 81-128 14-60 (563)
324 PRK09519 recA DNA recombinatio 94.7 0.14 3E-06 55.5 9.1 99 93-200 46-147 (790)
325 KOG1532 GTPase XAB1, interacts 94.7 0.022 4.7E-07 53.4 2.6 26 104-129 17-42 (366)
326 TIGR03496 FliI_clade1 flagella 94.7 0.097 2.1E-06 52.8 7.5 89 106-200 137-236 (411)
327 TIGR03324 alt_F1F0_F1_al alter 94.7 0.11 2.5E-06 53.2 8.0 89 106-200 162-263 (497)
328 TIGR00416 sms DNA repair prote 94.7 0.19 4.1E-06 51.6 9.7 99 92-200 80-179 (454)
329 PF03193 DUF258: Protein of un 94.7 0.06 1.3E-06 47.0 5.2 36 89-129 23-58 (161)
330 PRK07196 fliI flagellum-specif 94.7 0.13 2.8E-06 52.1 8.3 90 105-200 154-254 (434)
331 TIGR01287 nifH nitrogenase iro 94.7 0.024 5.2E-07 54.0 2.9 22 107-128 1-22 (275)
332 TIGR00750 lao LAO/AO transport 94.6 0.044 9.4E-07 53.1 4.7 37 92-128 20-56 (300)
333 KOG0734 AAA+-type ATPase conta 94.6 0.18 3.8E-06 51.6 9.0 52 81-132 302-363 (752)
334 COG1124 DppF ABC-type dipeptid 94.6 0.042 9.1E-07 50.7 4.3 24 105-128 32-55 (252)
335 PRK06761 hypothetical protein; 94.6 0.058 1.3E-06 51.6 5.4 23 107-129 4-26 (282)
336 PRK05800 cobU adenosylcobinami 94.6 0.12 2.6E-06 45.6 7.1 83 107-200 2-85 (170)
337 PRK06995 flhF flagellar biosyn 94.6 0.14 2.9E-06 52.7 8.4 59 105-165 255-314 (484)
338 COG0593 DnaA ATPase involved i 94.6 0.11 2.4E-06 52.0 7.6 38 104-143 111-148 (408)
339 CHL00059 atpA ATP synthase CF1 94.6 0.12 2.7E-06 52.8 8.0 87 106-200 141-242 (485)
340 cd00820 PEPCK_HprK Phosphoenol 94.6 0.032 6.9E-07 45.2 3.1 22 106-127 15-36 (107)
341 cd00544 CobU Adenosylcobinamid 94.6 0.11 2.4E-06 45.8 6.8 79 109-200 2-82 (169)
342 PRK06620 hypothetical protein; 94.6 0.061 1.3E-06 49.4 5.4 23 107-129 45-67 (214)
343 PRK08451 DNA polymerase III su 94.6 0.23 5E-06 51.7 10.2 47 81-128 12-58 (535)
344 PF13481 AAA_25: AAA domain; P 94.6 0.048 1E-06 48.8 4.6 90 107-200 33-150 (193)
345 TIGR00176 mobB molybdopterin-g 94.6 0.026 5.7E-07 49.0 2.8 34 108-143 1-35 (155)
346 PRK09112 DNA polymerase III su 94.6 0.075 1.6E-06 52.6 6.3 50 78-128 18-67 (351)
347 PLN02674 adenylate kinase 94.6 0.22 4.8E-06 46.6 9.0 23 106-128 31-53 (244)
348 COG3640 CooC CO dehydrogenase 94.6 0.045 9.7E-07 50.3 4.2 21 108-128 2-22 (255)
349 PLN02348 phosphoribulokinase 94.5 0.051 1.1E-06 54.1 5.0 26 103-128 46-71 (395)
350 COG2019 AdkA Archaeal adenylat 94.5 0.032 7E-07 48.5 3.1 23 106-128 4-26 (189)
351 PRK05537 bifunctional sulfate 94.5 0.055 1.2E-06 57.0 5.5 48 81-128 367-414 (568)
352 PF03266 NTPase_1: NTPase; In 94.5 0.03 6.5E-07 49.4 3.0 20 109-128 2-21 (168)
353 TIGR02173 cyt_kin_arch cytidyl 94.5 0.033 7.1E-07 48.7 3.3 21 108-128 2-22 (171)
354 TIGR03600 phage_DnaB phage rep 94.5 0.67 1.4E-05 47.1 13.2 74 86-165 175-248 (421)
355 PF06745 KaiC: KaiC; InterPro 94.5 0.053 1.1E-06 50.0 4.7 91 104-200 17-124 (226)
356 cd04139 RalA_RalB RalA/RalB su 94.5 0.039 8.4E-07 47.4 3.6 22 108-129 2-23 (164)
357 PRK07960 fliI flagellum-specif 94.5 0.099 2.1E-06 53.1 6.9 25 105-129 174-198 (455)
358 PF13521 AAA_28: AAA domain; P 94.5 0.028 6E-07 49.1 2.6 20 109-128 2-21 (163)
359 TIGR00073 hypB hydrogenase acc 94.4 0.039 8.4E-07 50.3 3.7 25 104-128 20-44 (207)
360 PLN02200 adenylate kinase fami 94.4 0.037 8.1E-07 51.5 3.6 24 105-128 42-65 (234)
361 TIGR02902 spore_lonB ATP-depen 94.4 0.049 1.1E-06 57.0 4.8 45 82-128 64-108 (531)
362 PF06068 TIP49: TIP49 C-termin 94.4 0.17 3.6E-06 49.9 8.1 55 82-138 23-80 (398)
363 cd03214 ABC_Iron-Siderophores_ 94.4 0.32 6.9E-06 43.1 9.5 91 106-200 25-124 (180)
364 PRK08533 flagellar accessory p 94.4 0.19 4.1E-06 46.7 8.2 50 104-159 22-71 (230)
365 PRK05973 replicative DNA helic 94.4 0.21 4.6E-06 46.5 8.5 50 105-160 63-112 (237)
366 TIGR02655 circ_KaiC circadian 94.4 0.19 4.1E-06 52.1 9.0 102 92-200 249-362 (484)
367 PF02562 PhoH: PhoH-like prote 94.4 0.045 9.8E-07 49.7 3.9 53 87-143 4-56 (205)
368 cd01122 GP4d_helicase GP4d_hel 94.4 0.26 5.6E-06 46.7 9.3 53 106-164 30-83 (271)
369 PRK09825 idnK D-gluconate kina 94.4 0.037 7.9E-07 49.2 3.2 22 107-128 4-25 (176)
370 PRK06793 fliI flagellum-specif 94.3 0.21 4.5E-06 50.7 8.9 90 106-200 156-255 (432)
371 cd02117 NifH_like This family 94.3 0.034 7.3E-07 50.9 3.0 22 107-128 1-22 (212)
372 PRK08472 fliI flagellum-specif 94.3 0.1 2.2E-06 52.9 6.7 24 106-129 157-180 (434)
373 PRK14971 DNA polymerase III su 94.3 0.25 5.4E-06 52.7 9.9 47 81-128 15-61 (614)
374 PHA02244 ATPase-like protein 94.3 0.077 1.7E-06 52.4 5.6 45 80-128 93-141 (383)
375 PRK13230 nitrogenase reductase 94.3 0.034 7.3E-07 53.2 3.1 22 107-128 2-23 (279)
376 TIGR00041 DTMP_kinase thymidyl 94.3 0.079 1.7E-06 47.5 5.4 22 107-128 4-25 (195)
377 PRK13232 nifH nitrogenase redu 94.3 0.034 7.4E-07 53.0 3.1 22 107-128 2-23 (273)
378 PRK05342 clpX ATP-dependent pr 94.3 0.062 1.4E-06 54.3 5.1 47 82-128 70-130 (412)
379 COG0237 CoaE Dephospho-CoA kin 94.3 0.042 9E-07 49.9 3.4 23 106-128 2-24 (201)
380 PRK09111 DNA polymerase III su 94.3 0.056 1.2E-06 57.2 4.9 48 80-128 21-68 (598)
381 TIGR01039 atpD ATP synthase, F 94.3 0.13 2.9E-06 52.2 7.4 92 106-200 143-246 (461)
382 PF00005 ABC_tran: ABC transpo 94.3 0.034 7.4E-07 46.7 2.7 24 106-129 11-34 (137)
383 TIGR03574 selen_PSTK L-seryl-t 94.3 0.031 6.7E-07 52.5 2.7 21 108-128 1-21 (249)
384 COG1100 GTPase SAR1 and relate 94.2 0.034 7.4E-07 50.7 2.9 23 107-129 6-28 (219)
385 PRK03731 aroL shikimate kinase 94.2 0.037 8E-07 48.6 3.0 22 107-128 3-24 (171)
386 PLN02924 thymidylate kinase 94.2 0.15 3.2E-06 47.1 7.0 25 105-129 15-39 (220)
387 cd01130 VirB11-like_ATPase Typ 94.2 0.075 1.6E-06 47.5 5.0 36 90-128 12-47 (186)
388 PRK06820 type III secretion sy 94.2 0.14 3.1E-06 51.9 7.4 23 106-128 163-185 (440)
389 COG1066 Sms Predicted ATP-depe 94.2 0.25 5.4E-06 49.1 8.7 98 92-200 79-177 (456)
390 COG0703 AroK Shikimate kinase 94.2 0.042 9E-07 48.3 3.0 28 107-136 3-30 (172)
391 cd01428 ADK Adenylate kinase ( 94.1 0.039 8.4E-07 49.4 3.0 20 109-128 2-21 (194)
392 PRK08356 hypothetical protein; 94.1 0.043 9.2E-07 49.5 3.2 22 106-127 5-26 (195)
393 TIGR01026 fliI_yscN ATPase Fli 94.1 0.15 3.2E-06 51.9 7.4 24 106-129 163-186 (440)
394 COG0194 Gmk Guanylate kinase [ 94.1 0.048 1E-06 48.4 3.3 25 106-130 4-28 (191)
395 TIGR02546 III_secr_ATP type II 94.1 0.25 5.5E-06 50.1 9.0 89 106-200 145-244 (422)
396 PF06309 Torsin: Torsin; Inte 94.1 0.11 2.3E-06 43.3 5.1 47 83-129 25-76 (127)
397 PRK14532 adenylate kinase; Pro 94.1 0.041 8.9E-07 49.2 3.0 20 109-128 3-22 (188)
398 cd02040 NifH NifH gene encodes 94.1 0.039 8.5E-07 52.2 3.0 22 107-128 2-23 (270)
399 cd01983 Fer4_NifH The Fer4_Nif 94.1 0.042 9.2E-07 42.5 2.7 21 108-128 1-21 (99)
400 COG1223 Predicted ATPase (AAA+ 94.1 0.076 1.6E-06 49.6 4.6 48 82-129 120-174 (368)
401 smart00072 GuKc Guanylate kina 94.1 0.063 1.4E-06 47.9 4.2 24 106-129 2-25 (184)
402 cd03116 MobB Molybdenum is an 94.1 0.05 1.1E-06 47.5 3.4 22 107-128 2-23 (159)
403 PRK13236 nitrogenase reductase 94.0 0.049 1.1E-06 52.6 3.6 25 104-128 4-28 (296)
404 CHL00081 chlI Mg-protoporyphyr 94.0 0.055 1.2E-06 53.3 3.9 48 80-129 14-61 (350)
405 cd02022 DPCK Dephospho-coenzym 94.0 0.039 8.6E-07 49.0 2.7 21 108-128 1-21 (179)
406 TIGR02030 BchI-ChlI magnesium 94.0 0.078 1.7E-06 52.1 5.0 45 82-128 3-47 (337)
407 PRK00698 tmk thymidylate kinas 94.0 0.049 1.1E-06 49.1 3.4 23 106-128 3-25 (205)
408 KOG0730 AAA+-type ATPase [Post 94.0 0.18 3.9E-06 52.7 7.7 55 80-136 431-496 (693)
409 PF03215 Rad17: Rad17 cell cyc 94.0 0.065 1.4E-06 55.7 4.6 59 81-143 17-78 (519)
410 PRK01184 hypothetical protein; 94.0 0.046 1E-06 48.7 3.1 21 107-128 2-22 (184)
411 PRK05022 anaerobic nitric oxid 93.9 0.29 6.2E-06 51.1 9.4 48 82-129 186-233 (509)
412 cd01134 V_A-ATPase_A V/A-type 93.9 0.46 9.9E-06 46.7 10.0 49 106-160 157-206 (369)
413 PRK14493 putative bifunctional 93.9 0.048 1E-06 52.0 3.2 28 107-136 2-29 (274)
414 PRK08154 anaerobic benzoate ca 93.9 0.086 1.9E-06 51.3 5.1 25 104-128 131-155 (309)
415 PHA02530 pseT polynucleotide k 93.9 0.049 1.1E-06 52.5 3.4 22 107-128 3-24 (300)
416 smart00173 RAS Ras subfamily o 93.9 0.061 1.3E-06 46.4 3.7 22 108-129 2-23 (164)
417 PF10662 PduV-EutP: Ethanolami 93.9 0.049 1.1E-06 46.5 2.9 23 107-129 2-24 (143)
418 PF01926 MMR_HSR1: 50S ribosom 93.9 0.048 1E-06 44.5 2.8 21 109-129 2-22 (116)
419 PRK09087 hypothetical protein; 93.9 0.048 1E-06 50.5 3.2 24 106-129 44-67 (226)
420 PF01078 Mg_chelatase: Magnesi 93.9 0.11 2.4E-06 47.2 5.3 42 83-128 3-44 (206)
421 PLN02796 D-glycerate 3-kinase 93.9 0.056 1.2E-06 52.9 3.7 24 105-128 99-122 (347)
422 cd04119 RJL RJL (RabJ-Like) su 93.9 0.053 1.1E-06 46.7 3.2 21 109-129 3-23 (168)
423 COG4639 Predicted kinase [Gene 93.9 0.037 8E-07 47.6 2.1 24 106-129 2-25 (168)
424 PRK08099 bifunctional DNA-bind 93.9 0.047 1E-06 55.0 3.2 24 105-128 218-241 (399)
425 PF07693 KAP_NTPase: KAP famil 93.9 0.21 4.6E-06 48.5 7.8 73 89-165 2-82 (325)
426 KOG0729 26S proteasome regulat 93.8 0.17 3.6E-06 47.4 6.4 52 83-136 177-239 (435)
427 COG0541 Ffh Signal recognition 93.8 0.44 9.5E-06 47.8 9.8 71 92-167 79-158 (451)
428 COG0003 ArsA Predicted ATPase 93.8 0.071 1.5E-06 51.9 4.3 23 106-128 2-24 (322)
429 KOG1514 Origin recognition com 93.8 0.56 1.2E-05 49.6 10.9 110 81-200 394-517 (767)
430 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.8 0.051 1.1E-06 49.8 3.2 35 106-143 30-64 (218)
431 cd01862 Rab7 Rab7 subfamily. 93.8 0.05 1.1E-06 47.3 2.9 22 108-129 2-23 (172)
432 PRK11608 pspF phage shock prot 93.8 0.066 1.4E-06 52.5 4.1 47 82-128 5-51 (326)
433 cd03225 ABC_cobalt_CbiO_domain 93.8 0.052 1.1E-06 49.4 3.2 23 106-128 27-49 (211)
434 PRK13695 putative NTPase; Prov 93.8 0.051 1.1E-06 48.0 3.0 22 108-129 2-23 (174)
435 COG1224 TIP49 DNA helicase TIP 93.8 0.12 2.5E-06 50.4 5.5 51 81-133 37-90 (450)
436 PF13086 AAA_11: AAA domain; P 93.8 0.06 1.3E-06 49.2 3.6 21 108-128 19-39 (236)
437 KOG0738 AAA+-type ATPase [Post 93.8 0.077 1.7E-06 52.2 4.3 79 238-318 359-450 (491)
438 cd04163 Era Era subfamily. Er 93.8 0.06 1.3E-06 45.9 3.4 24 106-129 3-26 (168)
439 PRK13233 nifH nitrogenase redu 93.8 0.051 1.1E-06 51.8 3.2 22 107-128 3-24 (275)
440 PRK13235 nifH nitrogenase redu 93.8 0.049 1.1E-06 51.9 3.1 22 107-128 2-23 (274)
441 PF13245 AAA_19: Part of AAA d 93.8 0.067 1.4E-06 40.5 3.1 23 106-128 10-33 (76)
442 COG1116 TauB ABC-type nitrate/ 93.7 0.056 1.2E-06 50.2 3.2 23 106-128 29-51 (248)
443 PRK13768 GTPase; Provisional 93.7 0.058 1.3E-06 50.9 3.4 23 106-128 2-24 (253)
444 KOG2228 Origin recognition com 93.7 0.14 3E-06 49.5 5.9 115 81-200 22-146 (408)
445 PLN02165 adenylate isopentenyl 93.7 0.058 1.3E-06 52.6 3.4 25 105-129 42-66 (334)
446 PRK09165 replicative DNA helic 93.7 0.67 1.4E-05 48.2 11.4 56 105-164 216-284 (497)
447 PRK10733 hflB ATP-dependent me 93.7 0.27 5.8E-06 52.8 8.7 46 83-128 152-207 (644)
448 PF10443 RNA12: RNA12 protein; 93.7 0.15 3.2E-06 51.2 6.2 40 88-129 1-41 (431)
449 cd04138 H_N_K_Ras_like H-Ras/N 93.7 0.071 1.5E-06 45.6 3.7 21 109-129 4-24 (162)
450 TIGR01420 pilT_fam pilus retra 93.7 0.1 2.3E-06 51.5 5.3 86 106-203 122-207 (343)
451 TIGR00960 3a0501s02 Type II (G 93.7 0.056 1.2E-06 49.4 3.1 35 106-143 29-63 (216)
452 TIGR01166 cbiO cobalt transpor 93.7 0.057 1.2E-06 48.3 3.1 23 106-128 18-40 (190)
453 COG1126 GlnQ ABC-type polar am 93.6 0.059 1.3E-06 49.0 3.0 35 106-143 28-62 (240)
454 TIGR00455 apsK adenylylsulfate 93.6 0.072 1.6E-06 47.4 3.7 24 105-128 17-40 (184)
455 cd03229 ABC_Class3 This class 93.6 0.061 1.3E-06 47.7 3.2 23 106-128 26-48 (178)
456 TIGR00382 clpX endopeptidase C 93.6 0.11 2.4E-06 52.4 5.4 48 81-128 75-138 (413)
457 TIGR00231 small_GTP small GTP- 93.6 0.058 1.3E-06 45.4 2.9 23 108-130 3-25 (161)
458 PRK13231 nitrogenase reductase 93.6 0.06 1.3E-06 51.0 3.3 23 107-129 3-25 (264)
459 cd04155 Arl3 Arl3 subfamily. 93.6 0.056 1.2E-06 47.2 2.9 24 106-129 14-37 (173)
460 PRK06321 replicative DNA helic 93.6 1.4 3E-05 45.5 13.4 54 106-164 226-279 (472)
461 cd03297 ABC_ModC_molybdenum_tr 93.6 0.065 1.4E-06 49.0 3.4 34 107-143 24-57 (214)
462 PRK06305 DNA polymerase III su 93.6 0.1 2.2E-06 53.5 5.1 47 81-128 15-61 (451)
463 PRK04196 V-type ATP synthase s 93.6 0.18 4E-06 51.6 6.9 92 106-200 143-249 (460)
464 COG1120 FepC ABC-type cobalami 93.5 0.065 1.4E-06 50.4 3.3 36 105-143 27-62 (258)
465 PRK07471 DNA polymerase III su 93.5 0.13 2.8E-06 51.3 5.6 50 78-128 14-63 (365)
466 cd02026 PRK Phosphoribulokinas 93.5 0.052 1.1E-06 51.8 2.8 21 108-128 1-21 (273)
467 cd03265 ABC_DrrA DrrA is the A 93.5 0.098 2.1E-06 48.0 4.5 35 106-143 26-60 (220)
468 cd04113 Rab4 Rab4 subfamily. 93.5 0.063 1.4E-06 46.2 3.0 21 109-129 3-23 (161)
469 cd03261 ABC_Org_Solvent_Resist 93.5 0.063 1.4E-06 49.8 3.2 23 106-128 26-48 (235)
470 cd03269 ABC_putative_ATPase Th 93.5 0.065 1.4E-06 48.8 3.2 35 106-143 26-60 (210)
471 COG1763 MobB Molybdopterin-gua 93.4 0.057 1.2E-06 47.1 2.6 23 106-128 2-24 (161)
472 PRK14490 putative bifunctional 93.4 0.1 2.2E-06 52.1 4.7 31 105-137 4-34 (369)
473 COG3267 ExeA Type II secretory 93.4 0.82 1.8E-05 42.7 10.2 101 92-200 36-140 (269)
474 COG0305 DnaB Replicative DNA h 93.4 0.59 1.3E-05 47.3 10.1 111 85-204 176-290 (435)
475 smart00175 RAB Rab subfamily o 93.4 0.064 1.4E-06 46.1 2.9 21 109-129 3-23 (164)
476 PRK02496 adk adenylate kinase; 93.4 0.074 1.6E-06 47.4 3.4 21 108-128 3-23 (184)
477 PF13604 AAA_30: AAA domain; P 93.4 0.13 2.8E-06 46.5 5.0 23 106-128 18-40 (196)
478 KOG0727 26S proteasome regulat 93.4 0.18 4E-06 46.8 5.9 47 83-129 155-212 (408)
479 TIGR02673 FtsE cell division A 93.4 0.067 1.5E-06 48.8 3.2 35 106-143 28-62 (214)
480 PRK13541 cytochrome c biogenes 93.4 0.069 1.5E-06 48.1 3.2 24 106-129 26-49 (195)
481 TIGR02315 ABC_phnC phosphonate 93.4 0.066 1.4E-06 49.9 3.2 35 106-143 28-62 (243)
482 PF03029 ATP_bind_1: Conserved 93.4 0.046 1E-06 51.0 2.1 20 111-130 1-20 (238)
483 cd00876 Ras Ras family. The R 93.4 0.085 1.8E-06 45.0 3.6 21 109-129 2-22 (160)
484 cd03259 ABC_Carb_Solutes_like 93.4 0.068 1.5E-06 48.8 3.2 23 106-128 26-48 (213)
485 PRK13407 bchI magnesium chelat 93.4 0.088 1.9E-06 51.7 4.1 46 81-128 6-51 (334)
486 cd03293 ABC_NrtD_SsuB_transpor 93.4 0.068 1.5E-06 49.1 3.2 24 106-129 30-53 (220)
487 cd03256 ABC_PhnC_transporter A 93.4 0.067 1.4E-06 49.8 3.2 23 106-128 27-49 (241)
488 cd04159 Arl10_like Arl10-like 93.4 0.08 1.7E-06 44.8 3.5 21 109-129 2-22 (159)
489 cd03263 ABC_subfamily_A The AB 93.4 0.069 1.5E-06 49.0 3.2 35 106-143 28-62 (220)
490 cd01673 dNK Deoxyribonucleosid 93.3 0.06 1.3E-06 48.3 2.7 22 108-129 1-22 (193)
491 cd03222 ABC_RNaseL_inhibitor T 93.3 0.069 1.5E-06 47.5 3.0 23 106-128 25-47 (177)
492 CHL00060 atpB ATP synthase CF1 93.3 0.23 5E-06 51.0 7.1 92 106-200 161-271 (494)
493 KOG0989 Replication factor C, 93.3 0.12 2.5E-06 49.5 4.6 60 80-141 33-92 (346)
494 TIGR01281 DPOR_bchL light-inde 93.3 0.066 1.4E-06 50.8 3.1 21 108-128 2-22 (268)
495 PRK11034 clpA ATP-dependent Cl 93.3 0.13 2.7E-06 56.1 5.5 47 82-128 457-510 (758)
496 cd01124 KaiC KaiC is a circadi 93.3 0.072 1.6E-06 47.3 3.1 45 108-158 1-45 (187)
497 PF02374 ArsA_ATPase: Anion-tr 93.3 0.062 1.3E-06 52.1 2.9 22 107-128 2-23 (305)
498 cd03260 ABC_PstB_phosphate_tra 93.3 0.072 1.6E-06 49.1 3.2 23 106-128 26-48 (227)
499 cd04124 RabL2 RabL2 subfamily. 93.3 0.076 1.7E-06 46.0 3.2 21 109-129 3-23 (161)
500 cd03235 ABC_Metallic_Cations A 93.3 0.066 1.4E-06 48.8 2.9 23 106-128 25-47 (213)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=7.6e-52 Score=444.15 Aligned_cols=371 Identities=21% Similarity=0.309 Sum_probs=282.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhccccCCC---------------CchHHHHHHHHHHHHHHHHHHHHHhhccccchhhhcC
Q 041194 2 DEINCFTYESEKVIDTFINSITQQKSQS---------------SCSKDICDALQGLQSRITDIKQRMQQHKHMDSEIIHG 66 (418)
Q Consensus 2 ~~lr~~ayd~ED~lD~~~~~~~~~~~~~---------------~~~~~i~~~i~~l~~rl~~i~~~~~~~~~~~~~~~~~ 66 (418)
+.+++++|++||.++.|.......+... ++.++.+..+..+.+|+..+.+..+.+... +
T Consensus 62 e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~------~ 135 (889)
T KOG4658|consen 62 EDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSK------G 135 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccc------c
Confidence 4678899999999999998876653221 223377888888899999888888887221 1
Q ss_pred -cccccc-CC----Ccccc-CCCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCC-CCCCcce
Q 041194 67 -IKTFEA-KA----GISSS-SKSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSY-VKHYFDC 138 (418)
Q Consensus 67 -~~~~~~-~~----~~~~~-~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~-~~~~F~~ 138 (418)
+..... .. ..+.+ .+... ||.+..++++++.|..++. .+++|+||||+||||||++++|+.. ++.+||.
T Consensus 136 ~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~ 212 (889)
T KOG4658|consen 136 VFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDG 212 (889)
T ss_pred ceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCce
Confidence 111111 00 11112 23334 9999999999999998874 8999999999999999999999977 9999999
Q ss_pred eeeeecCCCCCCCHHHHHHHHHHHhCCCCCccccccCCHHHHHHHHHHHhccCcEEEEEeccCCCc--------------
Q 041194 139 HAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDFEDGE-------------- 204 (418)
Q Consensus 139 ~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDvp~~~-------------- 204 (418)
++||+ ||++++...++++|+..++..... ....+.++++..|.+.|++|||||||||||+..
T Consensus 213 ~iWV~--VSk~f~~~~iq~~Il~~l~~~~~~--~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~ 288 (889)
T KOG4658|consen 213 VIWVV--VSKEFTTRKIQQTILERLGLLDEE--WEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSREN 288 (889)
T ss_pred EEEEE--EcccccHHhHHHHHHHHhccCCcc--cchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccC
Confidence 99999 999999999999999999874321 233345789999999999999999999995442
Q ss_pred -----------ccccc-ccccccch---------------------------------hhhh---ccCcchhhcccch-h
Q 041194 205 -----------NIRLD-LVPTGGPL---------------------------------RAIY---KGCPFLLLYHGSI-S 235 (418)
Q Consensus 205 -----------~Va~~-~~~~~~~~---------------------------------~~I~---~GlPLAl~~ig~~-~ 235 (418)
+||.. ++. ...+ ++++ +|||||++++|+. +
T Consensus 289 g~KvvlTTRs~~V~~~~m~~-~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma 367 (889)
T KOG4658|consen 289 GSKVVLTTRSEEVCGRAMGV-DYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLA 367 (889)
T ss_pred CeEEEEEeccHhhhhccccC-CccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhc
Confidence 55555 332 1222 5666 9999999999998 6
Q ss_pred ----------hhhcccccc---------cccccccccccCCCchhhHhHhhhhccCCCCceechhHHHHHhHhcCCCCcC
Q 041194 236 ----------LEENIGEAV---------QIPLVLRYFEYCMSPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFILDN 296 (418)
Q Consensus 236 ----------~~~~~~~~~---------~i~~~L~~~sy~~L~~~lk~cfl~~s~Fp~~~~i~~~~Li~~Wiaeg~i~~~ 296 (418)
+.+.+.+.. .+.++| .+||+.||+++|.||+|||+||+||.|+++.|+.+|+||||+.+.
T Consensus 368 ~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iL-klSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~ 446 (889)
T KOG4658|consen 368 CKKTVQEWRRALNVLKSSLAADFSGMEESILPIL-KLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPL 446 (889)
T ss_pred CCCcHHHHHHHHccccccccCCCCchhhhhHHhh-hccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCcc
Confidence 333343331 788999 999999999999999999999999999999999999999999874
Q ss_pred -----hHHHHHHHHHHHHhccccccccccCCCceeEEEeChhHHHHHhHcCC-----CcceEecccc---cCC-----CC
Q 041194 297 -----SEATTESYLEQLIKEGFAEAKKRKAGGTINTCSIPGRWGPLLFLVPS-----QVEFIFSPFV---DGK-----SG 358 (418)
Q Consensus 297 -----~e~~a~~~l~~Lv~rsll~~~~~~~~g~v~~~~mHdlv~d~a~~~~~-----~e~~~~~~~~---~~~-----~~ 358 (418)
+++.|..|+.+|++++|++..... ++..+|+|||+|||+|..+|+ +|+++..... +.+ ..
T Consensus 447 ~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~ 524 (889)
T KOG4658|consen 447 DGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNS 524 (889)
T ss_pred ccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhh
Confidence 789999999999999999987643 666899999999999999999 7775543210 011 23
Q ss_pred eEEEEEEeCcccccccCCCCCceeEEEEecC
Q 041194 359 KKALLFLTSCAYLKKMPEQLWCIKSLNNVKC 389 (418)
Q Consensus 359 ~~~ls~~~~~~~~~~~~~~l~~lrsL~~~~~ 389 (418)
.+|.++.++...........++++||.+.+.
T Consensus 525 ~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n 555 (889)
T KOG4658|consen 525 VRRMSLMNNKIEHIAGSSENPKLRTLLLQRN 555 (889)
T ss_pred eeEEEEeccchhhccCCCCCCccceEEEeec
Confidence 4577766654433222222234555555543
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.8e-33 Score=270.43 Aligned_cols=204 Identities=30% Similarity=0.447 Sum_probs=161.5
Q ss_pred chhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCC
Q 041194 88 LDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSS 167 (418)
Q Consensus 88 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~ 167 (418)
||.++++|.++|....++.++|+|+||||+||||||+.++++..++.+|+.++|+. ++...+...+++.|+.+++...
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~--~~~~~~~~~~~~~i~~~l~~~~ 78 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS--LSKNPSLEQLLEQILRQLGEPD 78 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE--EES-SCCHHHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc--cccccccccccccccccccccc
Confidence 78999999999999667899999999999999999999999766999999999999 9999999999999999999864
Q ss_pred CccccccCCHHHHHHHHHHHhccCcEEEEEeccCCCc-------------------------cccccccccccch-----
Q 041194 168 RLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDFEDGE-------------------------NIRLDLVPTGGPL----- 217 (418)
Q Consensus 168 ~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDvp~~~-------------------------~Va~~~~~~~~~~----- 217 (418)
... ....+.+.+...+++.|+++++|||||||++.. .++..+......+
T Consensus 79 ~~~-~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L 157 (287)
T PF00931_consen 79 SSI-SDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPL 157 (287)
T ss_dssp STS-SCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS-
T ss_pred ccc-ccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 311 145678889999999999999999999993221 2322222111111
Q ss_pred ----------------------------hhhh---ccCcchhhcccch-h----------hhhccccc--------cccc
Q 041194 218 ----------------------------RAIY---KGCPFLLLYHGSI-S----------LEENIGEA--------VQIP 247 (418)
Q Consensus 218 ----------------------------~~I~---~GlPLAl~~ig~~-~----------~~~~~~~~--------~~i~ 247 (418)
++|+ +|+||||+++|++ + ..+++.+. ..+.
T Consensus 158 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~ 237 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVF 237 (287)
T ss_dssp -HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4566 9999999999998 5 11111111 1688
Q ss_pred ccccccccCCCchhhHhHhhhhccCCCCceechhHHHHHhHhcCCCCc
Q 041194 248 LVLRYFEYCMSPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFILD 295 (418)
Q Consensus 248 ~~L~~~sy~~L~~~lk~cfl~~s~Fp~~~~i~~~~Li~~Wiaeg~i~~ 295 (418)
.++ .+||+.||+++|.||+|||+||+++.|+++.|+++|++||||.+
T Consensus 238 ~~l-~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 238 SAL-ELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHH-HHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccc-eechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 899 99999999999999999999999999999999999999999976
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.96 E-value=1.4e-29 Score=284.18 Aligned_cols=241 Identities=17% Similarity=0.176 Sum_probs=175.7
Q ss_pred ccCCCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecC-CCCC-------
Q 041194 78 SSSKSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEP-YSNE------- 149 (418)
Q Consensus 78 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~-vs~~------- 149 (418)
++.+...+||+++.+++|..+|..+.+..++|+||||||+||||||+.+|+ ++..+|+..+|+.+. ++..
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~ 256 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSA 256 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccc
Confidence 345667899999999999999977667799999999999999999999999 788899998887521 1111
Q ss_pred ----CC-HHHHHHHHHHHhCCCCCccccccCCHHHHHHHHHHHhccCcEEEEEeccCCCc--------------------
Q 041194 150 ----YD-ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDFEDGE-------------------- 204 (418)
Q Consensus 150 ----~~-~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDvp~~~-------------------- 204 (418)
++ ...+++.++.++..... ..... ...+++.|++||+|||||||++..
T Consensus 257 ~~~~~~~~~~l~~~~l~~il~~~~---~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIi 329 (1153)
T PLN03210 257 NPDDYNMKLHLQRAFLSEILDKKD---IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIV 329 (1153)
T ss_pred cccccchhHHHHHHHHHHHhCCCC---cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEE
Confidence 11 12455666666554332 11111 145788899999999999993321
Q ss_pred -----cccccccccccch--------------------------------hhhh---ccCcchhhcccch-hhhhccccc
Q 041194 205 -----NIRLDLVPTGGPL--------------------------------RAIY---KGCPFLLLYHGSI-SLEENIGEA 243 (418)
Q Consensus 205 -----~Va~~~~~~~~~~--------------------------------~~I~---~GlPLAl~~ig~~-~~~~~~~~~ 243 (418)
.++..++.. .+| ++|+ +|+||||+++|++ +-.....|+
T Consensus 330 TTrd~~vl~~~~~~-~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~ 408 (1153)
T PLN03210 330 ITKDKHFLRAHGID-HIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWM 408 (1153)
T ss_pred EeCcHHHHHhcCCC-eEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHH
Confidence 222211111 112 4566 9999999999999 622222222
Q ss_pred ---------c--cccccccccccCCCchh-hHhHhhhhccCCCCceechhHHHHHhHhcCCCCcChHHHHHHHHHHHHhc
Q 041194 244 ---------V--QIPLVLRYFEYCMSPFC-LKLCFLYLSVFPAHLEISTRQLYQLWIAEGFILDNSEATTESYLEQLIKE 311 (418)
Q Consensus 244 ---------~--~i~~~L~~~sy~~L~~~-lk~cfl~~s~Fp~~~~i~~~~Li~~Wiaeg~i~~~~e~~a~~~l~~Lv~r 311 (418)
. .|..+| ++||+.|+++ .|.||++||+||.+..++ .+..|++++.... +..++.|+++
T Consensus 409 ~~l~~L~~~~~~~I~~~L-~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~------~~~l~~L~~k 478 (1153)
T PLN03210 409 DMLPRLRNGLDGKIEKTL-RVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV------NIGLKNLVDK 478 (1153)
T ss_pred HHHHHHHhCccHHHHHHH-HHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc------hhChHHHHhc
Confidence 2 689999 9999999874 999999999999987654 4778888876543 3359999999
Q ss_pred cccccccccCCCceeEEEeChhHHHHHhHcCCCc
Q 041194 312 GFAEAKKRKAGGTINTCSIPGRWGPLLFLVPSQV 345 (418)
Q Consensus 312 sll~~~~~~~~g~v~~~~mHdlv~d~a~~~~~~e 345 (418)
||++... ..++|||++|+||+.++.++
T Consensus 479 sLi~~~~-------~~~~MHdLl~~~~r~i~~~~ 505 (1153)
T PLN03210 479 SLIHVRE-------DIVEMHSLLQEMGKEIVRAQ 505 (1153)
T ss_pred CCEEEcC-------CeEEhhhHHHHHHHHHHHhh
Confidence 9998643 24899999999999998665
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.84 E-value=7e-08 Score=107.17 Aligned_cols=235 Identities=14% Similarity=0.098 Sum_probs=136.8
Q ss_pred CCCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCC-CCCCHHHHHHH
Q 041194 80 SKSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYS-NEYDADQILDI 158 (418)
Q Consensus 80 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs-~~~~~~~ll~~ 158 (418)
.....++-|+. |.+.|... ...+++.|.|++|.||||++....+ . ++..+|++ +. .+-++..+...
T Consensus 11 ~~~~~~~~R~r----l~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~--~----~~~~~w~~--l~~~d~~~~~f~~~ 77 (903)
T PRK04841 11 VRLHNTVVRER----LLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAA--G----KNNLGWYS--LDESDNQPERFASY 77 (903)
T ss_pred CCccccCcchH----HHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHH--h----CCCeEEEe--cCcccCCHHHHHHH
Confidence 34556676764 44444332 3578999999999999999999886 2 22578999 86 44566777777
Q ss_pred HHHHhCCCCCc--cc-------cccCCHHHHHHHHHHHhc--cCcEEEEEecc-------------------CCCccccc
Q 041194 159 VIKFLMPSSRL--SE-------IMDKNYEMKKIILHEYLM--TKRYLIVIDDF-------------------EDGENIRL 208 (418)
Q Consensus 159 il~~l~~~~~~--~~-------~~~~~~~~l~~~l~~~L~--~kr~LlVLDDv-------------------p~~~~Va~ 208 (418)
++..+...... +. ....+...+...+-..+. +.+++|||||+ |.+-.+..
T Consensus 78 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~ 157 (903)
T PRK04841 78 LIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVV 157 (903)
T ss_pred HHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEE
Confidence 77777431110 00 011223333333333333 67899999999 11111100
Q ss_pred ccccccc--------------------ch----------------------hhhh---ccCcchhhcccch-h-hh---h
Q 041194 209 DLVPTGG--------------------PL----------------------RAIY---KGCPFLLLYHGSI-S-LE---E 238 (418)
Q Consensus 209 ~~~~~~~--------------------~~----------------------~~I~---~GlPLAl~~ig~~-~-~~---~ 238 (418)
....... .+ .+|. +|.|+++..++.. . -. .
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~ 237 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNSSLH 237 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchh
Confidence 0000000 00 3344 9999999876643 2 10 0
Q ss_pred ccccc------ccccccccccccCCCchhhHhHhhhhccCCCCceechhHHHHHhHhcCCCCcChHHHHHHHHHHHHhcc
Q 041194 239 NIGEA------VQIPLVLRYFEYCMSPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFILDNSEATTESYLEQLIKEG 312 (418)
Q Consensus 239 ~~~~~------~~i~~~L~~~sy~~L~~~lk~cfl~~s~Fp~~~~i~~~~Li~~Wiaeg~i~~~~e~~a~~~l~~Lv~rs 312 (418)
...+. ..+...|..-.++.||++.+..++..|+++ .++.+.+-.+ .. .+.+...+++|.+++
T Consensus 238 ~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l------~~---~~~~~~~L~~l~~~~ 305 (903)
T PRK04841 238 DSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRV------TG---EENGQMRLEELERQG 305 (903)
T ss_pred hhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHH------cC---CCcHHHHHHHHHHCC
Confidence 00111 123333312337899999999999999997 2333222211 11 134678999999999
Q ss_pred ccccccccCCCceeEEEeChhHHHHHhHcC
Q 041194 313 FAEAKKRKAGGTINTCSIPGRWGPLLFLVP 342 (418)
Q Consensus 313 ll~~~~~~~~g~v~~~~mHdlv~d~a~~~~ 342 (418)
++...... .+ ..|+.|++++++++...
T Consensus 306 l~~~~~~~-~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 306 LFIQRMDD-SG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred CeeEeecC-CC--CEEehhHHHHHHHHHHH
Confidence 97532211 12 35889999999998764
No 5
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.79 E-value=4.1e-08 Score=97.67 Aligned_cols=113 Identities=18% Similarity=0.091 Sum_probs=80.8
Q ss_pred CCCCcccchhhHHHHHHHHhcC--CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCc------ceeeeeecCCCCCCCH
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEG--PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF------DCHAWITEPYSNEYDA 152 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F------~~~~wv~~~vs~~~~~ 152 (418)
.+..++||++++++|...|... +.....+.|+|++|+|||++++.+++. +.... -..+|++ .....+.
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in--~~~~~~~ 88 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVN--CQILDTL 88 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEE--CCCCCCH
Confidence 3458999999999999998752 234567899999999999999999983 22111 1246777 6666677
Q ss_pred HHHHHHHHHHhC---CCCCccccccCCHHHHHHHHHHHhc--cCcEEEEEecc
Q 041194 153 DQILDIVIKFLM---PSSRLSEIMDKNYEMKKIILHEYLM--TKRYLIVIDDF 200 (418)
Q Consensus 153 ~~ll~~il~~l~---~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVLDDv 200 (418)
..++..|+.++. ...+ ....+..++...+.+.+. +++++||||++
T Consensus 89 ~~~~~~i~~~l~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~ 138 (365)
T TIGR02928 89 YQVLVELANQLRGSGEEVP---TTGLSTSEVFRRLYKELNERGDSLIIVLDEI 138 (365)
T ss_pred HHHHHHHHHHHhhcCCCCC---CCCCCHHHHHHHHHHHHHhcCCeEEEEECch
Confidence 889999999984 2211 122344555566666663 56889999998
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.78 E-value=4.4e-08 Score=98.50 Aligned_cols=115 Identities=14% Similarity=0.160 Sum_probs=84.4
Q ss_pred CCCCCcccchhhHHHHHHHHhcC--CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCc--ceeeeeecCCCCCCCHHHH
Q 041194 80 SKSRDTVGLDDRMEKLLDLLIEG--PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF--DCHAWITEPYSNEYDADQI 155 (418)
Q Consensus 80 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F--~~~~wv~~~vs~~~~~~~l 155 (418)
..+..++||++++++|...|... +.....+.|+|++|+|||++++.++++ ..... -..++++ .....+...+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~--l~~~~~~~~~v~in--~~~~~~~~~~ 102 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEE--LEEIAVKVVYVYIN--CQIDRTRYAI 102 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEE--CCcCCCHHHH
Confidence 35678999999999999998543 334456789999999999999999984 32222 2345666 6666678899
Q ss_pred HHHHHHHhCCCCCccccccCCHHHHHHHHHHHhc--cCcEEEEEecc
Q 041194 156 LDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM--TKRYLIVIDDF 200 (418)
Q Consensus 156 l~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVLDDv 200 (418)
+..|+.++..... + ....+.+++...+.+.+. ++..+||||++
T Consensus 103 ~~~i~~~l~~~~~-~-~~~~~~~~~~~~~~~~l~~~~~~~viviDE~ 147 (394)
T PRK00411 103 FSEIARQLFGHPP-P-SSGLSFDELFDKIAEYLDERDRVLIVALDDI 147 (394)
T ss_pred HHHHHHHhcCCCC-C-CCCCCHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 9999999976221 0 133456777777777775 45689999998
No 7
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.57 E-value=1.1e-07 Score=89.13 Aligned_cols=92 Identities=14% Similarity=0.009 Sum_probs=60.8
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCC--CCHHHHHHHHHHHhCCCCC--ccccccCCHHHHH
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNE--YDADQILDIVIKFLMPSSR--LSEIMDKNYEMKK 181 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~--~~~~~ll~~il~~l~~~~~--~~~~~~~~~~~l~ 181 (418)
-..++|+|.+|+|||||++.++++.... +|+..+|+. ++++ +++.++++.+...+-.... .+.....-.....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~--vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVL--LIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEE--EccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999964443 899999998 7776 7999999998333322110 0000000111122
Q ss_pred HHHHHH-hccCcEEEEEecc
Q 041194 182 IILHEY-LMTKRYLIVIDDF 200 (418)
Q Consensus 182 ~~l~~~-L~~kr~LlVLDDv 200 (418)
...... -.++++++++|++
T Consensus 93 ~~a~~~~~~G~~vll~iDei 112 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSI 112 (249)
T ss_pred HHHHHHHHCCCCEEEEEECH
Confidence 222222 2489999999998
No 8
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.56 E-value=9.5e-08 Score=85.20 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=32.2
Q ss_pred CcccchhhHHHHHHHHhc-CCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 84 DTVGLDDRMEKLLDLLIE-GPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 84 ~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.|+||+++.++|...|.. .+...+.+.|+|.+|+|||+|.+.++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 489999999999999952 3455799999999999999999999884
No 9
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.54 E-value=1.1e-07 Score=80.04 Aligned_cols=88 Identities=14% Similarity=0.180 Sum_probs=64.7
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCC-----cceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccccccCCHHH
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHY-----FDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEM 179 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~-----F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~ 179 (418)
+.+++.|+|.+|+|||++++.+.++ .... -...+|+. .+...+...+...|+.+++.... ...+.++
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~ 74 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVN--CPSSRTPRDFAQEILEALGLPLK----SRQTSDE 74 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEE--HHHHSSHHHHHHHHHHHHT-SSS----STS-HHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEE--eCCCCCHHHHHHHHHHHhCcccc----ccCCHHH
Confidence 3578999999999999999999983 2211 23456888 77777999999999999998664 2456778
Q ss_pred HHHHHHHHhccCcE-EEEEecc
Q 041194 180 KKIILHEYLMTKRY-LIVIDDF 200 (418)
Q Consensus 180 l~~~l~~~L~~kr~-LlVLDDv 200 (418)
+.+.+.+.+...+. +||+|++
T Consensus 75 l~~~~~~~l~~~~~~~lviDe~ 96 (131)
T PF13401_consen 75 LRSLLIDALDRRRVVLLVIDEA 96 (131)
T ss_dssp HHHHHHHHHHHCTEEEEEEETT
T ss_pred HHHHHHHHHHhcCCeEEEEeCh
Confidence 88888888877655 9999997
No 10
>PTZ00202 tuzin; Provisional
Probab=98.47 E-value=3e-06 Score=84.07 Aligned_cols=104 Identities=14% Similarity=0.111 Sum_probs=72.8
Q ss_pred cCCCCCcccchhhHHHHHHHHhcCC-CCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHH
Q 041194 79 SSKSRDTVGLDDRMEKLLDLLIEGP-PQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILD 157 (418)
Q Consensus 79 ~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~ 157 (418)
|.+.+.|+||+.+...|...|...+ ...+++.|+|++|+|||||++.+... .. + ...+++ .. +..+++.
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~--l~--~-~qL~vN--pr---g~eElLr 327 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRK--EG--M-PAVFVD--VR---GTEDTLR 327 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhc--CC--c-eEEEEC--CC---CHHHHHH
Confidence 4678899999999999999997543 34569999999999999999999973 32 2 123333 22 6799999
Q ss_pred HHHHHhCCCCCccccccCCHHHHHHHHHHHh-----c-cCcEEEEEe
Q 041194 158 IVIKFLMPSSRLSEIMDKNYEMKKIILHEYL-----M-TKRYLIVID 198 (418)
Q Consensus 158 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L-----~-~kr~LlVLD 198 (418)
.++.+|+.+.. ....++...|.+.| . +++.+||+-
T Consensus 328 ~LL~ALGV~p~------~~k~dLLrqIqeaLl~~~~e~GrtPVLII~ 368 (550)
T PTZ00202 328 SVVKALGVPNV------EACGDLLDFISEACRRAKKMNGETPLLVLK 368 (550)
T ss_pred HHHHHcCCCCc------ccHHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 99999997332 12233333333333 2 567777664
No 11
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.38 E-value=5.4e-07 Score=88.57 Aligned_cols=85 Identities=16% Similarity=0.071 Sum_probs=58.2
Q ss_pred eEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCC--CHHHHHHHHHHHhCCCCCccccccCCHH------
Q 041194 107 SMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEY--DADQILDIVIKFLMPSSRLSEIMDKNYE------ 178 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~--~~~~ll~~il~~l~~~~~~~~~~~~~~~------ 178 (418)
.-..|+|++|+||||||+.+|++.... +|+..+||. +++.. ++.++++.+.-.+-.... +.....
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~Vv--LIgER~~EVtdiqrsIlg~vv~st~----d~~~~~~~~~a~ 242 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVL--LIDERPEEVTDMQRSVKGEVVASTF----DEPAERHVQVAE 242 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEE--EeCCchhHHHHHHHHhcCcEEEECC----CCCHHHHHHHHH
Confidence 456899999999999999999964443 899999999 88887 777888887632211110 111111
Q ss_pred ---HHHHHHHHHhccCcEEEEEecc
Q 041194 179 ---MKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 179 ---~l~~~l~~~L~~kr~LlVLDDv 200 (418)
+.++.++ -.++++||++|++
T Consensus 243 ~~ie~Ae~~~--e~G~dVlL~iDsI 265 (416)
T PRK09376 243 MVIEKAKRLV--EHGKDVVILLDSI 265 (416)
T ss_pred HHHHHHHHHH--HcCCCEEEEEECh
Confidence 1112222 3679999999998
No 12
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.37 E-value=4.4e-06 Score=79.36 Aligned_cols=86 Identities=17% Similarity=0.212 Sum_probs=56.8
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccccccCCHHHHHHHHH
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILH 185 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 185 (418)
..++.|+|++|+|||||++.+++.... ..+ ..+|+. ....+..+++..|+..++.+.. ..+...+...+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~~---~~~~~~~~~l~~i~~~lG~~~~-----~~~~~~~~~~l~ 112 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKLV---NTRVDAEDLLRMVAADFGLETE-----GRDKAALLRELE 112 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeeee---CCCCCHHHHHHHHHHHcCCCCC-----CCCHHHHHHHHH
Confidence 568999999999999999999994321 121 223443 3345778899999988876432 122223333333
Q ss_pred H----H-hccCcEEEEEeccC
Q 041194 186 E----Y-LMTKRYLIVIDDFE 201 (418)
Q Consensus 186 ~----~-L~~kr~LlVLDDvp 201 (418)
+ . ..+++++||+||+.
T Consensus 113 ~~l~~~~~~~~~~vliiDe~~ 133 (269)
T TIGR03015 113 DFLIEQFAAGKRALLVVDEAQ 133 (269)
T ss_pred HHHHHHHhCCCCeEEEEECcc
Confidence 3 2 26788999999983
No 13
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.34 E-value=1.6e-06 Score=79.91 Aligned_cols=55 Identities=27% Similarity=0.329 Sum_probs=40.8
Q ss_pred cccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 85 TVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 85 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
|+||++++++|.+++..+. ...+.|+|+.|+|||+|++.+.+ ..++.-...+|+.
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y~~ 55 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVYID 55 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCHHC
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEEEe
Confidence 6899999999999998753 57899999999999999999999 4433222455665
No 14
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.27 E-value=1.4e-05 Score=78.40 Aligned_cols=220 Identities=16% Similarity=0.079 Sum_probs=119.6
Q ss_pred CCCCcccchhhHHHHHHHHhc---CCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHH
Q 041194 81 KSRDTVGLDDRMEKLLDLLIE---GPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILD 157 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~ 157 (418)
.-.+++|+++.++.+..++.. .......+.|+|++|+||||||+.+.+ .....|. ++. . .......-+.
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~--~l~~~~~---~~~--~-~~~~~~~~l~ 94 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIAN--EMGVNIR---ITS--G-PALEKPGDLA 94 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHH--HhCCCeE---EEe--c-ccccChHHHH
Confidence 456799999999999888864 234466788999999999999999999 4443321 222 1 1122223344
Q ss_pred HHHHHhCCCCCc--cccccCCHHHHHHHHHHHhccCcEEEEEeccCCCccc-----------------------cccccc
Q 041194 158 IVIKFLMPSSRL--SEIMDKNYEMKKIILHEYLMTKRYLIVIDDFEDGENI-----------------------RLDLVP 212 (418)
Q Consensus 158 ~il~~l~~~~~~--~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDvp~~~~V-----------------------a~~~~~ 212 (418)
.++..+....-. .+.+..+ ....+.+...+.+.+..+|+|+.+....+ ...++.
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~ 173 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGI 173 (328)
T ss_pred HHHHhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCe
Confidence 555555432200 0001111 12344567777788888888875322110 000100
Q ss_pred cc--cch-------------------------hhhh---ccCcchhhcccch-h---hhh--c-ccccc--ccccccccc
Q 041194 213 TG--GPL-------------------------RAIY---KGCPFLLLYHGSI-S---LEE--N-IGEAV--QIPLVLRYF 253 (418)
Q Consensus 213 ~~--~~~-------------------------~~I~---~GlPLAl~~ig~~-~---~~~--~-~~~~~--~i~~~L~~~ 253 (418)
.- ..+ ..|+ +|.|-.+..+... . ... . ...+. .....+ ..
T Consensus 174 ~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~-~~ 252 (328)
T PRK00080 174 VQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGVITKEIADKALDML-GV 252 (328)
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh-CC
Confidence 00 000 3333 6666433222221 1 100 0 00011 444556 77
Q ss_pred ccCCCchhhHhHhh-hhccCCCCceechhHHHHHhHhcCCCCcChHHHHHHHHH-HHHhcccccccc
Q 041194 254 EYCMSPFCLKLCFL-YLSVFPAHLEISTRQLYQLWIAEGFILDNSEATTESYLE-QLIKEGFAEAKK 318 (418)
Q Consensus 254 sy~~L~~~lk~cfl-~~s~Fp~~~~i~~~~Li~~Wiaeg~i~~~~e~~a~~~l~-~Lv~rsll~~~~ 318 (418)
.|..|++..+.-+. ....|+.+ .+..+.+...+ .. ....+++.++ .|++.+|++...
T Consensus 253 ~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g~-~~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 253 DELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------GE-ERDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred CcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------CC-CcchHHHHhhHHHHHcCCcccCC
Confidence 88889888777664 66677765 45555443322 11 2456777777 999999997433
No 15
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=7.8e-06 Score=81.03 Aligned_cols=111 Identities=14% Similarity=0.125 Sum_probs=84.9
Q ss_pred CCCcccchhhHHHHHHHHhcC--CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcce--eeeeecCCCCCCCHHHHHH
Q 041194 82 SRDTVGLDDRMEKLLDLLIEG--PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDC--HAWITEPYSNEYDADQILD 157 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~--~~wv~~~vs~~~~~~~ll~ 157 (418)
+..+.+|+++++++...|..- +....-+.|+|.+|+|||+.++.+.+ +++..... .+.|+ .-...+..+++.
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yIN--c~~~~t~~~i~~ 91 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYIN--CLELRTPYQVLS 91 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEe--eeeCCCHHHHHH
Confidence 344999999999999998652 22233388999999999999999999 55554322 56777 777788999999
Q ss_pred HHHHHhCCCCCccccccCCHHHHHHHHHHHhc--cCcEEEEEecc
Q 041194 158 IVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM--TKRYLIVIDDF 200 (418)
Q Consensus 158 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVLDDv 200 (418)
.|+++++.... ..+...+....+.+.+. ++.++||||++
T Consensus 92 ~i~~~~~~~p~----~g~~~~~~~~~l~~~~~~~~~~~IvvLDEi 132 (366)
T COG1474 92 KILNKLGKVPL----TGDSSLEILKRLYDNLSKKGKTVIVILDEV 132 (366)
T ss_pred HHHHHcCCCCC----CCCchHHHHHHHHHHHHhcCCeEEEEEcch
Confidence 99999974222 44566677777777775 48999999999
No 16
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.22 E-value=1.6e-05 Score=77.08 Aligned_cols=109 Identities=17% Similarity=0.094 Sum_probs=65.9
Q ss_pred CCcccchhhHHHHHHHHhcC---CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHH
Q 041194 83 RDTVGLDDRMEKLLDLLIEG---PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIV 159 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~i 159 (418)
.+|+|+++.+++|..++... ......+.++|++|+|||+||+.+.+ +....|. .+. .+.... ...+...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~--~~~~~~~---~~~--~~~~~~-~~~l~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIAN--EMGVNLK---ITS--GPALEK-PGDLAAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCCEE---Eec--cchhcC-chhHHHH
Confidence 46899999999999998642 23456688999999999999999999 4443331 222 111111 2223334
Q ss_pred HHHhCCCCCc--cccccCCHHHHHHHHHHHhccCcEEEEEecc
Q 041194 160 IKFLMPSSRL--SEIMDKNYEMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 160 l~~l~~~~~~--~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
+..+....-. .+.+..+ ....+.+...+.+.+..+|+++.
T Consensus 76 l~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~ 117 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKG 117 (305)
T ss_pred HHhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccC
Confidence 4444432200 0011112 22345677788888888888875
No 17
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.19 E-value=3.2e-05 Score=81.81 Aligned_cols=239 Identities=17% Similarity=0.140 Sum_probs=141.6
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCC-CCCHHHHHHHH
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSN-EYDADQILDIV 159 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~-~~~~~~ll~~i 159 (418)
...+.|-| .+|.+.|... ...+.+.|..++|.|||||+-+... ..... ..++|.+ ... +-++..++..+
T Consensus 17 ~~~~~v~R----~rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~--~~~~~-~~v~Wls--lde~dndp~rF~~yL 86 (894)
T COG2909 17 RPDNYVVR----PRLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRE--LAADG-AAVAWLS--LDESDNDPARFLSYL 86 (894)
T ss_pred Cccccccc----HHHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHH--hcCcc-cceeEee--cCCccCCHHHHHHHH
Confidence 34445555 5566666554 2589999999999999999998875 22221 3478999 765 45778899999
Q ss_pred HHHhCCCCCccc---------cccCCHHHHHHHHHHHhc--cCcEEEEEecc-------------------CCCcccccc
Q 041194 160 IKFLMPSSRLSE---------IMDKNYEMKKIILHEYLM--TKRYLIVIDDF-------------------EDGENIRLD 209 (418)
Q Consensus 160 l~~l~~~~~~~~---------~~~~~~~~l~~~l~~~L~--~kr~LlVLDDv-------------------p~~~~Va~~ 209 (418)
+..++.-.+... ....+...+...+..-|. .++..+||||- |++-.+...
T Consensus 87 i~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~ 166 (894)
T COG2909 87 IAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVT 166 (894)
T ss_pred HHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEE
Confidence 998875222100 122333444444444443 36899999998 222211111
Q ss_pred ccccccch-------------------------hhhh---ccCcchhhcccch-h-------------h-hhcccccc--
Q 041194 210 LVPTGGPL-------------------------RAIY---KGCPFLLLYHGSI-S-------------L-EENIGEAV-- 244 (418)
Q Consensus 210 ~~~~~~~~-------------------------~~I~---~GlPLAl~~ig~~-~-------------~-~~~~~~~~-- 244 (418)
..+....+ .+.. +|+||--..+..+ . + .+......
T Consensus 167 SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~ 246 (894)
T COG2909 167 SRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQS 246 (894)
T ss_pred eccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHH
Confidence 11111111 2222 6677765555544 1 0 01000000
Q ss_pred ---------cccccccccccCCCchhhHhHhhhhccCCCCceechhHHHHHhHhcCCCCcChHHHHHHHHHHHHhccccc
Q 041194 245 ---------QIPLVLRYFEYCMSPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFILDNSEATTESYLEQLIKEGFAE 315 (418)
Q Consensus 245 ---------~i~~~L~~~sy~~L~~~lk~cfl~~s~Fp~~~~i~~~~Li~~Wiaeg~i~~~~e~~a~~~l~~Lv~rsll~ 315 (418)
.+..-|..--++.||+++|..++-||+++.= -..|+..-.. ++.+...+++|-+++|+-
T Consensus 247 ~~~LsG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~Ltg--------~~ng~amLe~L~~~gLFl 314 (894)
T COG2909 247 LRGLSGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNALTG--------EENGQAMLEELERRGLFL 314 (894)
T ss_pred hhhccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHHhc--------CCcHHHHHHHHHhCCCce
Confidence 1111111334688999999999999998742 1233333322 466888999999999986
Q ss_pred cccccCCCceeEEEeChhHHHHHhHcCCC
Q 041194 316 AKKRKAGGTINTCSIPGRWGPLLFLVPSQ 344 (418)
Q Consensus 316 ~~~~~~~g~v~~~~mHdlv~d~a~~~~~~ 344 (418)
..-.+. + ..|+.|.+..||.+.....
T Consensus 315 ~~Ldd~-~--~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 315 QRLDDE-G--QWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred eeecCC-C--ceeehhHHHHHHHHhhhcc
Confidence 432221 2 5699999999999886554
No 18
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.17 E-value=1.2e-05 Score=67.81 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=40.2
Q ss_pred ccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 86 VGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 86 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
+|++..++.+...+.... .+.+.|+|.+|+|||||++.+++ .....-...+++.
T Consensus 1 ~~~~~~~~~i~~~~~~~~--~~~v~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~ 54 (151)
T cd00009 1 VGQEEAIEALREALELPP--PKNLLLYGPPGTGKTTLARAIAN--ELFRPGAPFLYLN 54 (151)
T ss_pred CchHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH--HhhcCCCCeEEEe
Confidence 478888889988887643 56888999999999999999999 3322122345555
No 19
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.16 E-value=7.1e-06 Score=81.13 Aligned_cols=92 Identities=12% Similarity=0.007 Sum_probs=59.6
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCC--CCHHHHHHHHHHHhCCCCC-ccccccCC-HHHHH
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNE--YDADQILDIVIKFLMPSSR-LSEIMDKN-YEMKK 181 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~--~~~~~ll~~il~~l~~~~~-~~~~~~~~-~~~l~ 181 (418)
-..++|+|.+|+|||||++.+++.... ++|+..+|+. +++. .++.++++.++..+-.... .+...... .+.+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~Vl--LIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVL--LIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEE--EcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 346899999999999999999995332 3699999999 7755 7899999998654333211 00000000 01111
Q ss_pred HHHHHH-hccCcEEEEEecc
Q 041194 182 IILHEY-LMTKRYLIVIDDF 200 (418)
Q Consensus 182 ~~l~~~-L~~kr~LlVLDDv 200 (418)
+..+.. -.|++++|++|++
T Consensus 245 e~Ae~~~~~GkdVVLlIDEi 264 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSI 264 (415)
T ss_pred HHHHHHHHcCCCeEEEEECh
Confidence 222222 3589999999998
No 20
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.08 E-value=2.3e-05 Score=83.66 Aligned_cols=115 Identities=12% Similarity=0.019 Sum_probs=76.7
Q ss_pred CCCCcccchhhHHHHHHHHhc---CCCCceEEEEECCCCCchHHHHHHHHhcCC--C-CCCcc--eeeeeecCCCCCCCH
Q 041194 81 KSRDTVGLDDRMEKLLDLLIE---GPPQRSMVAILDSIGLDKTAFATEAYNSSY--V-KHYFD--CHAWITEPYSNEYDA 152 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~--~-~~~F~--~~~wv~~~vs~~~~~ 152 (418)
.+..+.|||+++++|...|.. +.....++-|+|++|.|||+.++.|.+.-+ . +...+ ..++|. ...-.+.
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN--Cm~Lstp 830 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN--GMNVVHP 830 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe--CCccCCH
Confidence 356889999999999998865 233346788999999999999999987311 0 11122 135666 5555678
Q ss_pred HHHHHHHHHHhCCCCCccccccCCHHHHHHHHHHHhc---cCcEEEEEecc
Q 041194 153 DQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM---TKRYLIVIDDF 200 (418)
Q Consensus 153 ~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~---~kr~LlVLDDv 200 (418)
..+...|..++....+ .......+....+...+. +...+||||++
T Consensus 831 ~sIYqvI~qqL~g~~P---~~GlsS~evLerLF~~L~k~~r~v~IIILDEI 878 (1164)
T PTZ00112 831 NAAYQVLYKQLFNKKP---PNALNSFKILDRLFNQNKKDNRNVSILIIDEI 878 (1164)
T ss_pred HHHHHHHHHHHcCCCC---CccccHHHHHHHHHhhhhcccccceEEEeehH
Confidence 8889999998855332 123333444444544442 22458999999
No 21
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.03 E-value=4.2e-05 Score=74.17 Aligned_cols=113 Identities=12% Similarity=0.225 Sum_probs=80.9
Q ss_pred CCCCcccchhhHHHHHHHHhcCCC-CceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHH
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPP-QRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIV 159 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~-~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~i 159 (418)
-++.+.+|+..+..+..++...+. -+..|-|+|-.|.|||.+.+++++.. .. ..+|++ +-..++..-++..|
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n--~~ecft~~~lle~I 76 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLN--CVECFTYAILLEKI 76 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeee--hHHhccHHHHHHHH
Confidence 356788999999999999988765 45556899999999999999999944 22 248999 99999999999999
Q ss_pred HHHhCCCCCcccccc---CCHHHHHHHHHHH--hc--cCcEEEEEecc
Q 041194 160 IKFLMPSSRLSEIMD---KNYEMKKIILHEY--LM--TKRYLIVIDDF 200 (418)
Q Consensus 160 l~~l~~~~~~~~~~~---~~~~~l~~~l~~~--L~--~kr~LlVLDDv 200 (418)
+.+++..+..+.... .+..+....+.++ .. ++.++||||++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDna 124 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNA 124 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCH
Confidence 999963221111011 1122223333331 11 46899999998
No 22
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.92 E-value=5.6e-05 Score=75.99 Aligned_cols=70 Identities=13% Similarity=0.109 Sum_probs=57.0
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHH
Q 041194 82 SRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILD 157 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~ 157 (418)
..++++.++..+.+...|... +.|.++|++|+|||++|+.+++.......|+...||. +++..+..+++.
T Consensus 174 l~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt--FHpsySYeDFI~ 243 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ--FHQSYSYEDFIQ 243 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe--ecccccHHHHhc
Confidence 456788899999999999754 4678899999999999999998544445677888999 998888777654
No 23
>PF05729 NACHT: NACHT domain
Probab=97.92 E-value=1.7e-05 Score=68.95 Aligned_cols=82 Identities=18% Similarity=0.244 Sum_probs=47.7
Q ss_pred eEEEEECCCCCchHHHHHHHHhcCCCCCC----cceeeeeecCCCCCCCHH---HHHHHHHHHhCCCCCccccccCCHHH
Q 041194 107 SMVAILDSIGLDKTAFATEAYNSSYVKHY----FDCHAWITEPYSNEYDAD---QILDIVIKFLMPSSRLSEIMDKNYEM 179 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d~~~~~~----F~~~~wv~~~vs~~~~~~---~ll~~il~~l~~~~~~~~~~~~~~~~ 179 (418)
+++.|+|.+|+||||+++.++.+-.-... +...+|.+ .+...... .+...|..+...... ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~-------~~~~ 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS--LRDISDSNNSRSLADLLFDQLPESIA-------PIEE 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe--ehhhhhccccchHHHHHHHhhccchh-------hhHH
Confidence 57899999999999999999874222221 44566766 44333222 343333333332111 1111
Q ss_pred HHHHHHHH-hccCcEEEEEecc
Q 041194 180 KKIILHEY-LMTKRYLIVIDDF 200 (418)
Q Consensus 180 l~~~l~~~-L~~kr~LlVLDDv 200 (418)
.+... -..++++||||++
T Consensus 72 ---~~~~~~~~~~~~llilDgl 90 (166)
T PF05729_consen 72 ---LLQELLEKNKRVLLILDGL 90 (166)
T ss_pred ---HHHHHHHcCCceEEEEech
Confidence 12222 2578999999998
No 24
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.80 E-value=3.3e-05 Score=75.79 Aligned_cols=220 Identities=14% Similarity=0.115 Sum_probs=140.0
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccccccCCHHHHHHHH
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIIL 184 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l 184 (418)
..+.+.++|.|||||||++-.+.. +...|..-.|..+ ...-.|...+.-.....++.... +-+.....+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vd-l~pitD~~~v~~~~ag~~gl~~~-------~g~~~~~~~ 81 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVD-LAPITDPALVFPTLAGALGLHVQ-------PGDSAVDTL 81 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---Hhhhcccceeeee-ccccCchhHhHHHHHhhcccccc-------cchHHHHHH
Confidence 478999999999999999998887 6677865554441 44444454555444444655332 223445567
Q ss_pred HHHhccCcEEEEEeccC------------------CCc-----------------cccccccccc--cch----------
Q 041194 185 HEYLMTKRYLIVIDDFE------------------DGE-----------------NIRLDLVPTG--GPL---------- 217 (418)
Q Consensus 185 ~~~L~~kr~LlVLDDvp------------------~~~-----------------~Va~~~~~~~--~~~---------- 217 (418)
.....++|.++|+||.+ ... .+........ ..+
T Consensus 82 ~~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 82 VRRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred HHHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccc
Confidence 77888999999999981 000 1111111100 000
Q ss_pred -----------hhhh---ccCcchhhcccch-h------hhhcccccc---------------cccccccccccCCCchh
Q 041194 218 -----------RAIY---KGCPFLLLYHGSI-S------LEENIGEAV---------------QIPLVLRYFEYCMSPFC 261 (418)
Q Consensus 218 -----------~~I~---~GlPLAl~~ig~~-~------~~~~~~~~~---------------~i~~~L~~~sy~~L~~~ 261 (418)
.+|. .|.||+|...++. + +...+...+ ..+..+ .+||.-|..-
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl-~ws~~lLtgw 240 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASL-DWSYALLTGW 240 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchh-hhhhHhhhhH
Confidence 5666 9999999998887 4 222222111 888999 9999999999
Q ss_pred hHhHhhhhccCCCCceechhHHHHHhHhcCCCCcChHHHHHHHHHHHHhccccccccccCCCceeEEEeChhHHHHHhHc
Q 041194 262 LKLCFLYLSVFPAHLEISTRQLYQLWIAEGFILDNSEATTESYLEQLIKEGFAEAKKRKAGGTINTCSIPGRWGPLLFLV 341 (418)
Q Consensus 262 lk~cfl~~s~Fp~~~~i~~~~Li~~Wiaeg~i~~~~e~~a~~~l~~Lv~rsll~~~~~~~~g~v~~~~mHdlv~d~a~~~ 341 (418)
.+--|.-++.|...+... ...|.+-|-....+.-.....+..|++.+++...... ++ ..|+.-+-+|.|+..+
T Consensus 241 e~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~--~~-a~~Rl~eT~r~Yalae 313 (414)
T COG3903 241 ERALFGRLAVFVGGFDLG----LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLL--GR-ARYRLLETGRRYALAE 313 (414)
T ss_pred HHHHhcchhhhhhhhccc----HHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhh--hH-HHHHHHHHHHHHHHHH
Confidence 999999999998776544 3456666544311123445567788999988765432 22 3366767777777654
Q ss_pred CC
Q 041194 342 PS 343 (418)
Q Consensus 342 ~~ 343 (418)
-.
T Consensus 314 L~ 315 (414)
T COG3903 314 LH 315 (414)
T ss_pred HH
Confidence 33
No 25
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.73 E-value=6.2e-05 Score=76.29 Aligned_cols=45 Identities=20% Similarity=0.232 Sum_probs=35.7
Q ss_pred CCCcccchhhHHH---HHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEK---LLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|.+..+.. |.+++..+. ...+.++|++|+||||||+.+++
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~~--~~~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAGR--LSSMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 3468888877655 777776553 55678899999999999999998
No 26
>PRK08118 topology modulation protein; Reviewed
Probab=97.63 E-value=3.6e-05 Score=67.90 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=28.0
Q ss_pred eEEEEECCCCCchHHHHHHHHhcCCCC-CCcceeeee
Q 041194 107 SMVAILDSIGLDKTAFATEAYNSSYVK-HYFDCHAWI 142 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d~~~~-~~F~~~~wv 142 (418)
+-|.|+|++|+||||||+.+++...+. -+||..+|-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 358999999999999999999954443 456766653
No 27
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.60 E-value=0.00015 Score=70.89 Aligned_cols=86 Identities=15% Similarity=0.229 Sum_probs=52.0
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHH
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVI 160 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il 160 (418)
.+.+++|-+..+.++++ .+ ++.-...||++|+||||||+.+.. .....|.. +|...+-.+=++.++
T Consensus 28 GQ~HLlg~~~~lrr~v~---~~--~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~~-------~sAv~~gvkdlr~i~ 93 (436)
T COG2256 28 GQEHLLGEGKPLRRAVE---AG--HLHSMILWGPPGTGKTTLARLIAG--TTNAAFEA-------LSAVTSGVKDLREII 93 (436)
T ss_pred ChHhhhCCCchHHHHHh---cC--CCceeEEECCCCCCHHHHHHHHHH--hhCCceEE-------eccccccHHHHHHHH
Confidence 44555555544444433 33 366677999999999999999999 66666543 333222222222222
Q ss_pred HHhCCCCCccccccCCHHHHHHHHHHHhccCcEEEEEecc
Q 041194 161 KFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
+... +....|+|.+|++|.|
T Consensus 94 e~a~--------------------~~~~~gr~tiLflDEI 113 (436)
T COG2256 94 EEAR--------------------KNRLLGRRTILFLDEI 113 (436)
T ss_pred HHHH--------------------HHHhcCCceEEEEehh
Confidence 2211 2233489999999999
No 28
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.57 E-value=0.00014 Score=67.49 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=30.0
Q ss_pred eEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 107 SMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
--++|+|..|+|||||...+.. .....|++..+++
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t 48 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLIT 48 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEe
Confidence 4678999999999999999998 6778897777766
No 29
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.56 E-value=0.00039 Score=57.85 Aligned_cols=84 Identities=10% Similarity=0.046 Sum_probs=45.3
Q ss_pred eEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccccccCCHHHHHHHHHH
Q 041194 107 SMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHE 186 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 186 (418)
..+.|+|.+|+||||+|+.+.. .........+++. .+........... ........ ...........+.+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~ 72 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAR--ELGPPGGGVIYID--GEDILEEVLDQLL-LIIVGGKK-----ASGSGELRLRLALA 72 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHh--ccCCCCCCEEEEC--CEEccccCHHHHH-hhhhhccC-----CCCCHHHHHHHHHH
Confidence 5789999999999999999998 4444332344554 3332222211111 01111111 12222333334444
Q ss_pred HhccCc-EEEEEecc
Q 041194 187 YLMTKR-YLIVIDDF 200 (418)
Q Consensus 187 ~L~~kr-~LlVLDDv 200 (418)
.....+ .+|++|++
T Consensus 73 ~~~~~~~~viiiDei 87 (148)
T smart00382 73 LARKLKPDVLILDEI 87 (148)
T ss_pred HHHhcCCCEEEEECC
Confidence 444444 99999998
No 30
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.55 E-value=0.00013 Score=66.62 Aligned_cols=56 Identities=18% Similarity=0.138 Sum_probs=39.1
Q ss_pred CCCCCcccchhhHHHHHHHHhc---CCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcc
Q 041194 80 SKSRDTVGLDDRMEKLLDLLIE---GPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFD 137 (418)
Q Consensus 80 ~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~ 137 (418)
..-.++||-++-++.+.-++.. .++.+.-+..||++|+||||||+-+.+ +....|.
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~ 79 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK 79 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE
Confidence 4567899999988887665543 345677889999999999999999999 6666663
No 31
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.50 E-value=0.00027 Score=77.75 Aligned_cols=46 Identities=17% Similarity=0.309 Sum_probs=38.6
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 82 SRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-..++||+++++++++.|.... ..-+.++|.+|+|||++|+.++..
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999998764 223469999999999999999873
No 32
>PRK04195 replication factor C large subunit; Provisional
Probab=97.49 E-value=0.00039 Score=71.88 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=41.3
Q ss_pred CCCCcccchhhHHHHHHHHhcC--CCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEG--PPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.-.+++|.++.+++|.+|+..- +...+.+.|+|++|+||||+|+.+++.
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999752 223678999999999999999999993
No 33
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.43 E-value=0.002 Score=61.47 Aligned_cols=112 Identities=14% Similarity=0.152 Sum_probs=77.4
Q ss_pred CCCCcccchh---hHHHHHHHHhcC-CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcc------eeeeeecCCCCCC
Q 041194 81 KSRDTVGLDD---RMEKLLDLLIEG-PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFD------CHAWITEPYSNEY 150 (418)
Q Consensus 81 ~~~~~vGr~~---~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~------~~~wv~~~vs~~~ 150 (418)
..+..+|... .+++|.++|... .....-+.|||.+|.|||++++++.... -..++ .++.|. ....+
T Consensus 32 ~~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h--p~~~d~~~~~~PVv~vq--~P~~p 107 (302)
T PF05621_consen 32 RADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH--PPQSDEDAERIPVVYVQ--MPPEP 107 (302)
T ss_pred hcCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC--CCCCCCCCccccEEEEe--cCCCC
Confidence 4556677543 345555556544 3455678999999999999999998642 11121 345666 78889
Q ss_pred CHHHHHHHHHHHhCCCCCccccccCCHHHHHHHHHHHhcc-CcEEEEEecc
Q 041194 151 DADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMT-KRYLIVIDDF 200 (418)
Q Consensus 151 ~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVLDDv 200 (418)
+...+...|+.+++.+.. ...+...+.......|+. +--+||+|.+
T Consensus 108 ~~~~~Y~~IL~~lgaP~~----~~~~~~~~~~~~~~llr~~~vrmLIIDE~ 154 (302)
T PF05621_consen 108 DERRFYSAILEALGAPYR----PRDRVAKLEQQVLRLLRRLGVRMLIIDEF 154 (302)
T ss_pred ChHHHHHHHHHHhCcccC----CCCCHHHHHHHHHHHHHHcCCcEEEeech
Confidence 999999999999998764 344555666666666654 4458889987
No 34
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.40 E-value=0.00044 Score=75.10 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=38.2
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 83 RDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.+++||+++++++++.|.... ..=+.++|.+|+|||++|+.+.+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999997764 223569999999999999999883
No 35
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.37 E-value=0.00039 Score=67.16 Aligned_cols=71 Identities=13% Similarity=0.155 Sum_probs=48.1
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccccccCCHHHHHHHH
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIIL 184 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l 184 (418)
.+.-+.+||++|+||||||+.+.+..+-.. ..||. .|..-.-..=++.|+++....
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfve--lSAt~a~t~dvR~ife~aq~~------------------ 216 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVE--LSATNAKTNDVRDIFEQAQNE------------------ 216 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEE--EeccccchHHHHHHHHHHHHH------------------
Confidence 477788999999999999999999544333 34676 665544444444554443221
Q ss_pred HHHhccCcEEEEEecc
Q 041194 185 HEYLMTKRYLIVIDDF 200 (418)
Q Consensus 185 ~~~L~~kr~LlVLDDv 200 (418)
..+.++|..|.+|.|
T Consensus 217 -~~l~krkTilFiDEi 231 (554)
T KOG2028|consen 217 -KSLTKRKTILFIDEI 231 (554)
T ss_pred -HhhhcceeEEEeHHh
Confidence 234578899999999
No 36
>PRK07261 topology modulation protein; Provisional
Probab=97.35 E-value=0.00072 Score=59.88 Aligned_cols=22 Identities=23% Similarity=0.304 Sum_probs=19.9
Q ss_pred EEEEECCCCCchHHHHHHHHhc
Q 041194 108 MVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-|.|+|++|+||||||+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999873
No 37
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.35 E-value=0.00035 Score=58.30 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=19.4
Q ss_pred EEEECCCCCchHHHHHHHHhc
Q 041194 109 VAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~d 129 (418)
|.|+|++|+||||+|+.+.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999994
No 38
>PF13173 AAA_14: AAA domain
Probab=97.35 E-value=0.00041 Score=58.22 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=26.9
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
.+++.|.|+.|+|||||+++++.+.. .-...++++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~ 36 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYIN 36 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeec
Confidence 46899999999999999999998422 224456666
No 39
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.34 E-value=0.00068 Score=74.72 Aligned_cols=45 Identities=16% Similarity=0.303 Sum_probs=38.7
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-..++||+.++.++++.|.... ..-+.++|.+|+|||+||+.+..
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999998764 33456999999999999999988
No 40
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.32 E-value=0.00044 Score=74.40 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=38.0
Q ss_pred CCCCcccchhhHH---HHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCc
Q 041194 81 KSRDTVGLDDRME---KLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF 136 (418)
Q Consensus 81 ~~~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F 136 (418)
.-.+++|.+..+. .|.+.+..+. ..-+.++|++|+||||||+.+++ .....|
T Consensus 26 tldd~vGQe~ii~~~~~L~~~i~~~~--~~slLL~GPpGtGKTTLA~aIA~--~~~~~f 80 (725)
T PRK13341 26 TLEEFVGQDHILGEGRLLRRAIKADR--VGSLILYGPPGVGKTTLARIIAN--HTRAHF 80 (725)
T ss_pred cHHHhcCcHHHhhhhHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH--HhcCcc
Confidence 3456889888774 4555555443 55678999999999999999998 454444
No 41
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.32 E-value=0.0008 Score=66.01 Aligned_cols=45 Identities=20% Similarity=0.170 Sum_probs=38.5
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|++..++.|.+++..+. .+.+.++|++|+||||+|+.+.+
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999887653 44578999999999999999988
No 42
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.28 E-value=0.0028 Score=58.44 Aligned_cols=97 Identities=15% Similarity=0.156 Sum_probs=59.0
Q ss_pred HhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCc------ceeeeeecCCCCCCCHHHHHHHHHHHhCCCC-----
Q 041194 99 LIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF------DCHAWITEPYSNEYDADQILDIVIKFLMPSS----- 167 (418)
Q Consensus 99 L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F------~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~----- 167 (418)
|..+=+.-.++.|+|.+|+|||+||.++... ....- ...+|++ ....++...+.+ +........
T Consensus 12 l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~--~e~~~~~~rl~~-~~~~~~~~~~~~~~ 86 (226)
T cd01393 12 LGGGIPTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYID--TEGAFRPERLVQ-LAVRFGLDPEEVLD 86 (226)
T ss_pred hCCCCcCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEe--cCCCCCHHHHHH-HHHHhccchhhhhc
Confidence 3333345679999999999999999998763 22222 3468998 777777655543 333322211
Q ss_pred CccccccCCHHHHHHHHHHHhc---c-CcEEEEEecc
Q 041194 168 RLSEIMDKNYEMKKIILHEYLM---T-KRYLIVIDDF 200 (418)
Q Consensus 168 ~~~~~~~~~~~~l~~~l~~~L~---~-kr~LlVLDDv 200 (418)
...-....+.+++...+.+... . +--|||+|.+
T Consensus 87 ~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsi 123 (226)
T cd01393 87 NIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSV 123 (226)
T ss_pred cEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 0000223456666666666653 3 4458999975
No 43
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.25 E-value=0.00084 Score=73.83 Aligned_cols=45 Identities=20% Similarity=0.328 Sum_probs=38.6
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-..++||++++.++++.|.... ..-+.++|.+|+||||+|+.+.+
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998764 23446999999999999999998
No 44
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.24 E-value=0.0011 Score=61.31 Aligned_cols=98 Identities=14% Similarity=0.082 Sum_probs=55.4
Q ss_pred HHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHH-hCC-CCCcccccc
Q 041194 97 DLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKF-LMP-SSRLSEIMD 174 (418)
Q Consensus 97 ~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~-l~~-~~~~~~~~~ 174 (418)
++|..+=+.-.++.|+|.+|+|||++|.++... ....-...+|++ .. .++...+.+ +... +.. .....-...
T Consensus 14 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~--~e-~~~~~r~~~-~~~~~~~~~~~~~~~~~~ 87 (225)
T PRK09361 14 ELLGGGFERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYID--TE-GLSPERFKQ-IAGEDFEELLSNIIIFEP 87 (225)
T ss_pred HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEE--CC-CCCHHHHHH-HHhhChHhHhhCeEEEeC
Confidence 333333345679999999999999999999873 323335678998 66 565555432 3222 000 000000112
Q ss_pred CCHHH---HHHHHHHHhccCcEEEEEecc
Q 041194 175 KNYEM---KKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 175 ~~~~~---l~~~l~~~L~~kr~LlVLDDv 200 (418)
.+.++ ....+...+..+--++|+|.+
T Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~lvVIDsi 116 (225)
T PRK09361 88 SSFEEQSEAIRKAEKLAKENVGLIVLDSA 116 (225)
T ss_pred CCHHHHHHHHHHHHHHHHhcccEEEEeCc
Confidence 23333 334444445466779999976
No 45
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.24 E-value=0.00065 Score=62.64 Aligned_cols=52 Identities=10% Similarity=0.101 Sum_probs=36.5
Q ss_pred chhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 88 LDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 88 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
.+..++.+.+++... ....+.|+|.+|+|||+||+.+++. ........++++
T Consensus 22 ~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~ 73 (226)
T TIGR03420 22 NAELLAALRQLAAGK--GDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLP 73 (226)
T ss_pred cHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEe
Confidence 455677777776533 3678899999999999999999983 322233345555
No 46
>PRK08116 hypothetical protein; Validated
Probab=97.20 E-value=0.002 Score=61.35 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=44.6
Q ss_pred eEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccccccCCHHHHHHHHHH
Q 041194 107 SMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHE 186 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 186 (418)
..+.++|.+|+|||.||..+++ .+..+-...++++ ..+++..+........ ..+..+ +.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~--------~~~ll~~i~~~~~~~~------~~~~~~----~~~ 174 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVN--------FPQLLNRIKSTYKSSG------KEDENE----IIR 174 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE--------HHHHHHHHHHHHhccc------cccHHH----HHH
Confidence 4588999999999999999999 4433323345555 4455555554443211 112222 233
Q ss_pred HhccCcEEEEEecc
Q 041194 187 YLMTKRYLIVIDDF 200 (418)
Q Consensus 187 ~L~~kr~LlVLDDv 200 (418)
.+.+-. ||||||+
T Consensus 175 ~l~~~d-lLviDDl 187 (268)
T PRK08116 175 SLVNAD-LLILDDL 187 (268)
T ss_pred HhcCCC-EEEEecc
Confidence 344333 8999998
No 47
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.17 E-value=0.00065 Score=60.24 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=29.7
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
...+|.+.|+.|+||||+|+.+++ .....+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 456999999999999999999998 6655565555554
No 48
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.16 E-value=0.00045 Score=67.70 Aligned_cols=49 Identities=12% Similarity=0.344 Sum_probs=42.0
Q ss_pred CCCCcccchhhHHHHHHHHhcC----CCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEG----PPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-..+++|.++.++++++++... +...+++.++|++|+||||||+.+.+.
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3448999999999999998752 345789999999999999999999884
No 49
>PRK12377 putative replication protein; Provisional
Probab=97.16 E-value=0.00077 Score=63.25 Aligned_cols=72 Identities=15% Similarity=0.060 Sum_probs=44.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccccccCCHHHHHHHHH
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILH 185 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 185 (418)
...+.++|.+|+|||+||..+.+ .+......+++++ ..+++..+-...... ...... .
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~--------~~~l~~~l~~~~~~~--------~~~~~~----l 158 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVT--------VPDVMSRLHESYDNG--------QSGEKF----L 158 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEE--------HHHHHHHHHHHHhcc--------chHHHH----H
Confidence 46789999999999999999999 4444433446666 234555444333211 112222 2
Q ss_pred HHhccCcEEEEEecc
Q 041194 186 EYLMTKRYLIVIDDF 200 (418)
Q Consensus 186 ~~L~~kr~LlVLDDv 200 (418)
+.+ .+-=||||||+
T Consensus 159 ~~l-~~~dLLiIDDl 172 (248)
T PRK12377 159 QEL-CKVDLLVLDEI 172 (248)
T ss_pred HHh-cCCCEEEEcCC
Confidence 222 45669999997
No 50
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.15 E-value=0.00046 Score=68.78 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=40.1
Q ss_pred CCcccchhhHHHHHHHHhcC--C---------CCceEEEEECCCCCchHHHHHHHHhcCCCCCCc
Q 041194 83 RDTVGLDDRMEKLLDLLIEG--P---------PQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF 136 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~~--~---------~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F 136 (418)
.++.|+++.+++|.+.+... . ...+-+.++|++|+|||+||+.+++ .....|
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~ 184 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF 184 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE
Confidence 46789999999999887431 1 2355689999999999999999999 554443
No 51
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.15 E-value=0.0013 Score=72.76 Aligned_cols=45 Identities=16% Similarity=0.304 Sum_probs=38.2
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-..++||+.++.++++.|.... ..-+.++|.+|+|||++|..+..
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~ 216 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 3579999999999999998764 23445899999999999999988
No 52
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.13 E-value=0.00034 Score=57.76 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=20.1
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+|.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999998
No 53
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.12 E-value=0.0014 Score=64.70 Aligned_cols=105 Identities=11% Similarity=0.001 Sum_probs=63.0
Q ss_pred hHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCc-ce-eeeeecCCCC-CCCHHHHHHHHHHHhCCCC
Q 041194 91 RMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF-DC-HAWITEPYSN-EYDADQILDIVIKFLMPSS 167 (418)
Q Consensus 91 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F-~~-~~wv~~~vs~-~~~~~~ll~~il~~l~~~~ 167 (418)
-..++++.+..-... .-+.|+|.+|+|||||++.+.+ .+.... +. .+|+- +.+ +.++.++++.+...+..+.
T Consensus 119 ~~~RvID~l~PiGkG-QR~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~l--IgER~~EV~df~~~i~~~Vvast 193 (380)
T PRK12608 119 LSMRVVDLVAPIGKG-QRGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLL--IDERPEEVTDMRRSVKGEVYAST 193 (380)
T ss_pred hhHhhhhheeecCCC-ceEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEE--ecCCCCCHHHHHHHHhhhEEeec
Confidence 334577777753222 3459999999999999999888 333322 33 35666 554 4577889888888766533
Q ss_pred C-ccccccCCHHHHHHHHHHHh--ccCcEEEEEecc
Q 041194 168 R-LSEIMDKNYEMKKIILHEYL--MTKRYLIVIDDF 200 (418)
Q Consensus 168 ~-~~~~~~~~~~~l~~~l~~~L--~~kr~LlVLDDv 200 (418)
. .+.............+.+++ .+++++||+|++
T Consensus 194 ~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 194 FDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 1 00000011111112222222 589999999998
No 54
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.11 E-value=0.0018 Score=63.11 Aligned_cols=48 Identities=21% Similarity=0.169 Sum_probs=40.8
Q ss_pred CCCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 80 SKSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 80 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..-.+++|.++..+.+.+++..+. ...++.++|++|+||||+|+.+++
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~ 65 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCN 65 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHH
Confidence 345688999999999999998643 456788899999999999999998
No 55
>PRK06893 DNA replication initiation factor; Validated
Probab=97.10 E-value=0.0011 Score=61.58 Aligned_cols=36 Identities=11% Similarity=0.028 Sum_probs=27.6
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
.+.+.|+|.+|+|||+|++.+++ ..........|++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~y~~ 74 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSN--HYLLNQRTAIYIP 74 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEee
Confidence 45789999999999999999998 4433333456776
No 56
>PRK06696 uridine kinase; Validated
Probab=97.08 E-value=0.00081 Score=62.19 Aligned_cols=41 Identities=22% Similarity=0.204 Sum_probs=34.9
Q ss_pred chhhHHHHHHHHhc-CCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 88 LDDRMEKLLDLLIE-GPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 88 r~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
|.+-+++|.+.+.. ..+...+|+|.|.+|+||||||+.+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 56777888888875 345688999999999999999999988
No 57
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.07 E-value=0.0032 Score=57.37 Aligned_cols=91 Identities=12% Similarity=0.108 Sum_probs=53.5
Q ss_pred CCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHh-CCC-CCccccccCCH---H
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFL-MPS-SRLSEIMDKNY---E 178 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l-~~~-~~~~~~~~~~~---~ 178 (418)
+.-.++-|+|.+|+|||++|.++... ....-...+|++ ... ++..++.+. ++.. ... ....-....+. .
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~--~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~ 83 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYID--TEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQG 83 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEE--CCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHH
Confidence 55789999999999999999998863 333345678998 654 666655543 2221 000 00000111222 2
Q ss_pred HHHHHHHHHhcc-CcEEEEEecc
Q 041194 179 MKKIILHEYLMT-KRYLIVIDDF 200 (418)
Q Consensus 179 ~l~~~l~~~L~~-kr~LlVLDDv 200 (418)
.....+.+.+.. +--+||+|.+
T Consensus 84 ~~~~~l~~~~~~~~~~lvVIDSi 106 (209)
T TIGR02237 84 VAIQKTSKFIDRDSASLVVVDSF 106 (209)
T ss_pred HHHHHHHHHHhhcCccEEEEeCc
Confidence 335555555544 4558999965
No 58
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.06 E-value=0.0015 Score=70.63 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=37.6
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 83 RDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..++||++++.++++.|.... ..-+.++|.+|+|||++|+.+++
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 579999999999999998753 22345899999999999999987
No 59
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.06 E-value=0.0013 Score=65.97 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=36.9
Q ss_pred CcccchhhHHHHHHHHhcC-----------CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 84 DTVGLDDRMEKLLDLLIEG-----------PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 84 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
++.|+++.+++|.+.+... -...+-|.++|++|+|||++|+.+++
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH
Confidence 5669999999999876431 13456789999999999999999999
No 60
>PHA00729 NTP-binding motif containing protein
Probab=97.05 E-value=0.0027 Score=58.41 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=25.9
Q ss_pred HHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 94 KLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 94 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
++++.+...+ ..-|.|+|.+|+||||||..+.+
T Consensus 7 ~~~~~l~~~~--f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 7 KIVSAYNNNG--FVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHHhcCC--eEEEEEECCCCCCHHHHHHHHHH
Confidence 4455554443 45789999999999999999988
No 61
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.02 E-value=0.0018 Score=61.36 Aligned_cols=91 Identities=12% Similarity=0.203 Sum_probs=54.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcce-eeeeecCCCCCC-CHHHHHHHHHHHhCCCCCc--cc-cccCCHH--
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDC-HAWITEPYSNEY-DADQILDIVIKFLMPSSRL--SE-IMDKNYE-- 178 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~-~~wv~~~vs~~~-~~~~ll~~il~~l~~~~~~--~~-~~~~~~~-- 178 (418)
-.-++|.|..|+||||||+.+++ .++.+|+. .+++- +++.. .+.++.+++...=...... .. .+.....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~--iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAG--VGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEE--eccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 34689999999999999999999 56555644 44555 66554 4556666665431111000 00 0111111
Q ss_pred ---HHHHHHHHHh---ccCcEEEEEecc
Q 041194 179 ---MKKIILHEYL---MTKRYLIVIDDF 200 (418)
Q Consensus 179 ---~l~~~l~~~L---~~kr~LlVLDDv 200 (418)
...-.+.+++ +++.+||++||+
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1223355555 389999999997
No 62
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.00 E-value=0.0065 Score=56.37 Aligned_cols=94 Identities=12% Similarity=0.152 Sum_probs=55.4
Q ss_pred CCceEEEEECCCCCchHHHHHHHHhcCCCCCC----cceeeeeecCCCCCCCHHHHHHHHHHHhCCCCC-----cccccc
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYNSSYVKHY----FDCHAWITEPYSNEYDADQILDIVIKFLMPSSR-----LSEIMD 174 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~----F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~-----~~~~~~ 174 (418)
+.-.++.|+|.+|+|||+||.++.-....... -...+|++ ....++..++.+ +++..+.... ..-...
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~--~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~ 93 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID--TEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARA 93 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe--CCCCcCHHHHHH-HHHHhccChHhHhcCEEEEec
Confidence 45689999999999999999999753222221 25678999 777777655543 3333332110 000111
Q ss_pred CCHHH---HHHHHHHHhc-c-CcEEEEEecc
Q 041194 175 KNYEM---KKIILHEYLM-T-KRYLIVIDDF 200 (418)
Q Consensus 175 ~~~~~---l~~~l~~~L~-~-kr~LlVLDDv 200 (418)
.+.++ +...+...+. . +--|||+|.+
T Consensus 94 ~~~~~l~~~l~~l~~~l~~~~~~~liVIDSi 124 (235)
T cd01123 94 YNSDHQLQLLEELEAILIESSRIKLVIVDSV 124 (235)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCeeEEEEeCc
Confidence 22333 3344444443 3 5679999975
No 63
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.00 E-value=0.0044 Score=61.72 Aligned_cols=47 Identities=19% Similarity=0.156 Sum_probs=39.7
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|-+..++.+.+.+..+. -...+.++|+.|+||||+|+.+.+
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~ 60 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAK 60 (363)
T ss_pred chhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHH
Confidence 34578999999999999887653 345678999999999999999988
No 64
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.98 E-value=0.0055 Score=61.26 Aligned_cols=115 Identities=12% Similarity=0.094 Sum_probs=77.0
Q ss_pred CCCCCcccchhhHHHHHHHHhcC--CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHH
Q 041194 80 SKSRDTVGLDDRMEKLLDLLIEG--PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILD 157 (418)
Q Consensus 80 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~ 157 (418)
..+..++||+.++..+.+++... .....-+-|.|-+|.|||.+...++.+..-...=.+++.+. .-.-.....++.
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~in--c~sl~~~~aiF~ 224 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYIN--CTSLTEASAIFK 224 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEe--eccccchHHHHH
Confidence 46788999999999999998763 34566788999999999999999998532111112335554 333345667888
Q ss_pred HHHHHhCCCCCccccccCCHHHHHHHHHHHhccC--cEEEEEecc
Q 041194 158 IVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTK--RYLIVIDDF 200 (418)
Q Consensus 158 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~k--r~LlVLDDv 200 (418)
.|...+..... ......+....+.+...+. -+|+|||..
T Consensus 225 kI~~~~~q~~~----s~~~~~~~~~~~~~h~~q~k~~~llVlDEm 265 (529)
T KOG2227|consen 225 KIFSSLLQDLV----SPGTGMQHLEKFEKHTKQSKFMLLLVLDEM 265 (529)
T ss_pred HHHHHHHHHhc----CCchhHHHHHHHHHHHhcccceEEEEechh
Confidence 88877732211 1112245556666666554 589999987
No 65
>PRK07667 uridine kinase; Provisional
Probab=96.96 E-value=0.0012 Score=59.65 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=32.4
Q ss_pred hHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 91 RMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 91 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+.|.+.+....++..+|+|.|.+|+||||+|+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 2 STNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred CHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35677777777666678999999999999999999988
No 66
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.95 E-value=0.0031 Score=65.67 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=39.1
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|-+..++.|...+..+. -...+.++|+.|+||||+|+.+.+
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk 60 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAK 60 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999987653 345678999999999999999987
No 67
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.94 E-value=0.0013 Score=69.53 Aligned_cols=49 Identities=10% Similarity=0.108 Sum_probs=41.4
Q ss_pred CCCCCcccchhhHHHHHHHHhcCC---CCceEEEEECCCCCchHHHHHHHHh
Q 041194 80 SKSRDTVGLDDRMEKLLDLLIEGP---PQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 80 ~~~~~~vGr~~~~~~l~~~L~~~~---~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
....+++|-++.++++..||.... ...+++.|+|++|+||||+++.+..
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 455689999999999999987642 3346899999999999999999998
No 68
>PRK08727 hypothetical protein; Validated
Probab=96.91 E-value=0.0028 Score=59.09 Aligned_cols=36 Identities=14% Similarity=0.119 Sum_probs=27.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
...+.|+|..|+|||.|++.+++ ...+......+++
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~~ 76 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYLP 76 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 35699999999999999999988 4433333445666
No 69
>PLN03025 replication factor C subunit; Provisional
Probab=96.91 E-value=0.0049 Score=60.20 Aligned_cols=45 Identities=20% Similarity=0.208 Sum_probs=36.6
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|.++.++.|.+++..+. ..-+.++|++|+||||+|+.+.+
T Consensus 12 l~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~ 56 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAH 56 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 4567898888888888876543 34467999999999999999988
No 70
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.90 E-value=0.0035 Score=63.97 Aligned_cols=72 Identities=24% Similarity=0.314 Sum_probs=46.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCc-c-eeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccccccCCHHHHHHH
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYF-D-CHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKII 183 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F-~-~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~ 183 (418)
..-+.|+|.+|+|||+|++.+++ .+.... . ..+|++ ..+++..+...+... +.+ .
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~--------~~~f~~~~~~~~~~~---------~~~----~ 186 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYIT--------SEKFLNDLVDSMKEG---------KLN----E 186 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEE--------HHHHHHHHHHHHhcc---------cHH----H
Confidence 45699999999999999999999 544433 2 234555 345666666655321 112 2
Q ss_pred HHHHhccCcEEEEEecc
Q 041194 184 LHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 184 l~~~L~~kr~LlVLDDv 200 (418)
+++.+..+.-+|++||+
T Consensus 187 f~~~~~~~~dvLlIDDi 203 (440)
T PRK14088 187 FREKYRKKVDVLLIDDV 203 (440)
T ss_pred HHHHHHhcCCEEEEech
Confidence 33333344568999998
No 71
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.88 E-value=0.0058 Score=57.24 Aligned_cols=87 Identities=17% Similarity=0.082 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccc
Q 041194 92 MEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSE 171 (418)
Q Consensus 92 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~ 171 (418)
+..+.+...........+.++|.+|+|||+||..+.+ .+...-...++++ ..+++..+-.....
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~--~l~~~g~~v~~it--------~~~l~~~l~~~~~~------ 148 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICN--ELLLRGKSVLIIT--------VADIMSAMKDTFSN------ 148 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEE--------HHHHHHHHHHHHhh------
Confidence 3444444433233345789999999999999999999 4433223344554 34455444333321
Q ss_pred cccCCHHHHHHHHHHHhccCcEEEEEecc
Q 041194 172 IMDKNYEMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 172 ~~~~~~~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
...+.+.+ .+.+. +.=||||||+
T Consensus 149 -~~~~~~~~----l~~l~-~~dlLvIDDi 171 (244)
T PRK07952 149 -SETSEEQL----LNDLS-NVDLLVIDEI 171 (244)
T ss_pred -ccccHHHH----HHHhc-cCCEEEEeCC
Confidence 11122222 23344 3448888997
No 72
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.87 E-value=0.00082 Score=69.56 Aligned_cols=47 Identities=23% Similarity=0.174 Sum_probs=39.0
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 82 SRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-.+++|-+..++.|.+++..+. -...+.++|++|+||||+|+.+++.
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~ 59 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMA 59 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999998999988887764 3456799999999999999999884
No 73
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.87 E-value=0.0045 Score=67.19 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=39.7
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.-.+++|-+..++.|.+++..+. -...+.++|..|+||||+|+.+++.
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999987653 3445689999999999999999983
No 74
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.87 E-value=0.0062 Score=59.12 Aligned_cols=47 Identities=19% Similarity=0.187 Sum_probs=39.4
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.-.+++|+++.++.+.+++..+. .+.+.++|.+|+||||+|+.+.+.
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999997654 445799999999999999999883
No 75
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.86 E-value=0.0012 Score=61.97 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=43.9
Q ss_pred CCCCcccchhhHHHHHHHHhcC---CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCc
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEG---PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF 136 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F 136 (418)
.-.+++|-++-+++|.=.+... ++.+--+.++|++|.||||||.-+.+ +....+
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~ 80 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNL 80 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCe
Confidence 4568999998888887777652 46788899999999999999999999 555444
No 76
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.85 E-value=0.0056 Score=62.93 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=38.4
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.-.+++|.+...+.|...+..+. -...+.++|++|+||||+|+.+.+.
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999888888888776553 3356789999999999999999873
No 77
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.84 E-value=0.0038 Score=64.42 Aligned_cols=46 Identities=26% Similarity=0.250 Sum_probs=36.8
Q ss_pred CCcccchhhHHHHHHHHhcC-----------CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 83 RDTVGLDDRMEKLLDLLIEG-----------PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.++.|.+..+++|.+.+... -...+-+.++|++|+|||++|+.+++
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~ 238 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVAN 238 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHH
Confidence 45678999999998876421 12356689999999999999999999
No 78
>PRK08233 hypothetical protein; Provisional
Probab=96.84 E-value=0.0049 Score=54.60 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=21.6
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47999999999999999999987
No 79
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.81 E-value=0.0065 Score=64.88 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=39.0
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAK 60 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAK 60 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999987663 244567999999999999998887
No 80
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.77 E-value=0.0043 Score=63.67 Aligned_cols=92 Identities=20% Similarity=0.242 Sum_probs=52.3
Q ss_pred cccchhh--HHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcce--eeeeecCCCCCCCHHHHHHHHH
Q 041194 85 TVGLDDR--MEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDC--HAWITEPYSNEYDADQILDIVI 160 (418)
Q Consensus 85 ~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~--~~wv~~~vs~~~~~~~ll~~il 160 (418)
++|.... .....++....+....-+.|+|.+|+|||+|++.+.+ ++...+.. ..+++ ..++...+.
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~--------~~~~~~~~~ 194 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVT--------SEKFTNDFV 194 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEE--------HHHHHHHHH
Confidence 4464332 3333333333233346789999999999999999999 55444422 33554 344455555
Q ss_pred HHhCCCCCccccccCCHHHHHHHHHHHhccCcEEEEEecc
Q 041194 161 KFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
..+... ..+ .+.+.++ +.-+|+|||+
T Consensus 195 ~~~~~~---------~~~----~~~~~~~-~~dlLiiDDi 220 (450)
T PRK00149 195 NALRNN---------TME----EFKEKYR-SVDVLLIDDI 220 (450)
T ss_pred HHHHcC---------cHH----HHHHHHh-cCCEEEEehh
Confidence 555321 112 2333443 3448899998
No 81
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.73 E-value=0.0029 Score=58.76 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=19.2
Q ss_pred EEEECCCCCchHHHHHHHHh
Q 041194 109 VAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~ 128 (418)
|.|+|++|+||||+|+.+.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999988
No 82
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.72 E-value=0.0047 Score=57.27 Aligned_cols=50 Identities=16% Similarity=0.247 Sum_probs=39.8
Q ss_pred cCCCCCcccchhhHHHHHHHHhc--CCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 79 SSKSRDTVGLDDRMEKLLDLLIE--GPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 79 ~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+....+++|.|..++.|++-... .+....-+.+||..|+|||+|++.+.+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~ 74 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLN 74 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHH
Confidence 35677899999999999886543 122355667899999999999999998
No 83
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.72 E-value=0.004 Score=56.73 Aligned_cols=80 Identities=15% Similarity=0.000 Sum_probs=46.3
Q ss_pred CCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccccccCCHHHHHHH
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKII 183 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~ 183 (418)
..+.+|+|.|.+|+||||+|+.++. .+...+-. -++ ...-+. ..-..........+.. .....+.+-+.+.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~~~--~I~--~D~YYk-~~~~~~~~~~~~~n~d--~p~A~D~dLl~~~ 76 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVEKVV--VIS--LDDYYK-DQSHLPFEERNKINYD--HPEAFDLDLLIEH 76 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcCcce--Eee--cccccc-chhhcCHhhcCCcCcc--ChhhhcHHHHHHH
Confidence 3568999999999999999999999 55544211 111 001111 0000111111111111 1356778888888
Q ss_pred HHHHhccCc
Q 041194 184 LHEYLMTKR 192 (418)
Q Consensus 184 l~~~L~~kr 192 (418)
|...+.++.
T Consensus 77 L~~L~~g~~ 85 (218)
T COG0572 77 LKDLKQGKP 85 (218)
T ss_pred HHHHHcCCc
Confidence 999988887
No 84
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.71 E-value=0.0073 Score=60.72 Aligned_cols=46 Identities=20% Similarity=0.149 Sum_probs=36.6
Q ss_pred CCcccchhhHHHHHHHHhc---C--------CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 83 RDTVGLDDRMEKLLDLLIE---G--------PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~---~--------~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.++.|.+..+++|.+.+.. . -...+-+.++|++|+|||+||+.+.+
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3567888888888887642 1 13467789999999999999999999
No 85
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.71 E-value=0.0078 Score=62.49 Aligned_cols=47 Identities=13% Similarity=0.088 Sum_probs=39.4
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.++||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk 60 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAK 60 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999997663 244678999999999999999887
No 86
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.69 E-value=0.012 Score=57.22 Aligned_cols=60 Identities=17% Similarity=0.251 Sum_probs=45.0
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc----CCCCCCcceeeeee
Q 041194 83 RDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS----SYVKHYFDCHAWIT 143 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d----~~~~~~F~~~~wv~ 143 (418)
.+++|-+..++.+.+++..+. -.....++|+.|+||||+|+.+++. .....|.|...|..
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~ 67 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP 67 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc
Confidence 467899999999999987653 3457789999999999999999872 11234556655554
No 87
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.68 E-value=0.0055 Score=61.95 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=43.5
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcc--eeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccccccCCHHHHHHH
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFD--CHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKII 183 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~--~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~ 183 (418)
...+.|+|..|+|||+|++.+++ .+..... ..++++ ..++...+...+... ..+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~--------~~~~~~~~~~~~~~~---------~~~~---- 192 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVS--------SEKFTNDFVNALRNN---------KMEE---- 192 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEE--------HHHHHHHHHHHHHcC---------CHHH----
Confidence 45789999999999999999999 4443332 233444 344555555555321 1222
Q ss_pred HHHHhccCcEEEEEecc
Q 041194 184 LHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 184 l~~~L~~kr~LlVLDDv 200 (418)
+.+.+.+ .-+|+|||+
T Consensus 193 ~~~~~~~-~dlLiiDDi 208 (405)
T TIGR00362 193 FKEKYRS-VDLLLIDDI 208 (405)
T ss_pred HHHHHHh-CCEEEEehh
Confidence 3333332 338889998
No 88
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.67 E-value=0.0051 Score=56.75 Aligned_cols=91 Identities=16% Similarity=0.189 Sum_probs=54.0
Q ss_pred ccc-hhhHHHHHHHHhcC-CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcc--eeeeeecCCCCCCCHHHHHHHHHH
Q 041194 86 VGL-DDRMEKLLDLLIEG-PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFD--CHAWITEPYSNEYDADQILDIVIK 161 (418)
Q Consensus 86 vGr-~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~--~~~wv~~~vs~~~~~~~ll~~il~ 161 (418)
+|- .+..-...+.+..+ +.....+-|+|..|+|||.|.+.+++ ++.+..+ .+++++ ..++...+..
T Consensus 12 ~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~--------~~~f~~~~~~ 81 (219)
T PF00308_consen 12 VGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLS--------AEEFIREFAD 81 (219)
T ss_dssp -TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEE--------HHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceeec--------HHHHHHHHHH
Confidence 463 33333444445443 33456788999999999999999999 4443322 234554 5666666666
Q ss_pred HhCCCCCccccccCCHHHHHHHHHHHhccCcEEEEEecc
Q 041194 162 FLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
.+.... ...+++.+. .-=+|++||+
T Consensus 82 ~~~~~~-------------~~~~~~~~~-~~DlL~iDDi 106 (219)
T PF00308_consen 82 ALRDGE-------------IEEFKDRLR-SADLLIIDDI 106 (219)
T ss_dssp HHHTTS-------------HHHHHHHHC-TSSEEEEETG
T ss_pred HHHccc-------------chhhhhhhh-cCCEEEEecc
Confidence 664311 123444444 3447788998
No 89
>PRK08181 transposase; Validated
Probab=96.66 E-value=0.0021 Score=61.14 Aligned_cols=35 Identities=9% Similarity=-0.101 Sum_probs=25.4
Q ss_pred eEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 107 SMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
.-+.++|.+|+|||.||..+.+ ........+.|++
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeee
Confidence 3589999999999999999988 3333322345555
No 90
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.66 E-value=0.0085 Score=51.50 Aligned_cols=39 Identities=13% Similarity=0.161 Sum_probs=28.2
Q ss_pred EEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCC
Q 041194 108 MVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEY 150 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~ 150 (418)
++.|+|.+|+||||++..+.. .....-...+|++ .....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~--~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLAL--NIATKGGKVVYVD--IEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHH--HHHhcCCEEEEEE--CCcch
Confidence 468999999999999999987 3333334567777 55443
No 91
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.66 E-value=0.0023 Score=60.42 Aligned_cols=73 Identities=25% Similarity=0.204 Sum_probs=43.5
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccccccCCHHHHHHHH
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIIL 184 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l 184 (418)
+..=+.++|.+|+|||.||.++.+ ++...=-.+.+++ ..+++.++....... ..... |
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~--~l~~~g~sv~f~~--------~~el~~~Lk~~~~~~--------~~~~~----l 161 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGN--ELLKAGISVLFIT--------APDLLSKLKAAFDEG--------RLEEK----L 161 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEEE--------HHHHHHHHHHHHhcC--------chHHH----H
Confidence 466789999999999999999999 4442212234555 445555554444321 11222 2
Q ss_pred HHHhccCcEEEEEecc
Q 041194 185 HEYLMTKRYLIVIDDF 200 (418)
Q Consensus 185 ~~~L~~kr~LlVLDDv 200 (418)
.+.+ .+-=||||||+
T Consensus 162 ~~~l-~~~dlLIiDDl 176 (254)
T COG1484 162 LREL-KKVDLLIIDDI 176 (254)
T ss_pred HHHh-hcCCEEEEecc
Confidence 2222 22348899997
No 92
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.66 E-value=0.0094 Score=62.88 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=40.1
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+
T Consensus 13 tFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK 59 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAK 59 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999998664 246788999999999999999987
No 93
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.65 E-value=0.0041 Score=55.36 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=19.7
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999988
No 94
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.65 E-value=0.0023 Score=66.16 Aligned_cols=46 Identities=13% Similarity=0.345 Sum_probs=40.0
Q ss_pred CCcccchhhHHHHHHHHh----cCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 83 RDTVGLDDRMEKLLDLLI----EGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~----~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+++|.++.+++|++.|. ..+..-+++.++|++|+||||||+.+.+
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 368999999999999983 2345568999999999999999999988
No 95
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.62 E-value=0.0053 Score=64.33 Aligned_cols=47 Identities=13% Similarity=0.158 Sum_probs=39.7
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk 60 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAK 60 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 44678999999999999987653 235788999999999999999987
No 96
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.62 E-value=0.009 Score=57.32 Aligned_cols=86 Identities=20% Similarity=0.181 Sum_probs=46.9
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCC-CCcceeeeeecCCCC-CCCHHHHHHHHHHHhCCCCCccccccCCHHHHHH
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVK-HYFDCHAWITEPYSN-EYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKI 182 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~-~~F~~~~wv~~~vs~-~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~ 182 (418)
..++++|+|++|+||||++..+....... +.+ .+..++ ... .....+.+....+.++.+.. ...+...+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~--~D~~r~~a~eql~~~~~~~~~p~~----~~~~~~~l~~ 265 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALIT--TDTYRIGAVEQLKTYAKILGVPVK----VARDPKELRK 265 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEE--CCccchhHHHHHHHHHHHhCCcee----ccCCHHHHHH
Confidence 46799999999999999998887732212 122 234444 221 11223344444444443322 2234455555
Q ss_pred HHHHHhccCcEEEEEec
Q 041194 183 ILHEYLMTKRYLIVIDD 199 (418)
Q Consensus 183 ~l~~~L~~kr~LlVLDD 199 (418)
.+... .+ .=+|++|.
T Consensus 266 ~l~~~-~~-~d~vliDt 280 (282)
T TIGR03499 266 ALDRL-RD-KDLILIDT 280 (282)
T ss_pred HHHHc-cC-CCEEEEeC
Confidence 55543 33 45777775
No 97
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.62 E-value=0.0095 Score=54.66 Aligned_cols=96 Identities=15% Similarity=0.068 Sum_probs=52.0
Q ss_pred HHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHH----hCCCCCcccc
Q 041194 97 DLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKF----LMPSSRLSEI 172 (418)
Q Consensus 97 ~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~----l~~~~~~~~~ 172 (418)
++|..+=+.-.++.|.|.+|+||||||.++... ....=...+|++ ....++ +-+++++.. +....- -.
T Consensus 10 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~--~e~~~~--~~~~~~~~~~~~~~~~~~~--~~ 81 (218)
T cd01394 10 ELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYID--TEGLSS--ERFRQIAGDRPERAASSII--VF 81 (218)
T ss_pred HHhcCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE--CCCCCH--HHHHHHHhHChHhhhcCEE--EE
Confidence 334333245789999999999999999998873 322223456887 554443 223333322 111100 01
Q ss_pred ccCCHHHH---HHHHHHHhccCcEEEEEecc
Q 041194 173 MDKNYEMK---KIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 173 ~~~~~~~l---~~~l~~~L~~kr~LlVLDDv 200 (418)
...+..++ ...+...+..+.-+||+|-+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~lvvIDsi 112 (218)
T cd01394 82 EPMDFNEQGRAIQETETFADEKVDLVVVDSA 112 (218)
T ss_pred eCCCHHHHHHHHHHHHHHHhcCCcEEEEech
Confidence 12222232 23444445544668999975
No 98
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.62 E-value=0.0017 Score=57.84 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=24.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
..-+.++|..|+|||.||..+.+.. +...+ ...|++
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~-~~~g~-~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA-IRKGY-SVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh-ccCCc-ceeEee
Confidence 4569999999999999999998731 12222 245666
No 99
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.61 E-value=0.0094 Score=53.77 Aligned_cols=83 Identities=13% Similarity=0.076 Sum_probs=45.3
Q ss_pred EEEEECCCCCchHHHHHHHHhcCCCCC-Ccce---eeeeecCCCCCCCHHHHHHHHHHHhCCCCCccccccCCHHHHHHH
Q 041194 108 MVAILDSIGLDKTAFATEAYNSSYVKH-YFDC---HAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKII 183 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d~~~~~-~F~~---~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~ 183 (418)
||+|.|.+|+||||+|+.+.. .+.. .+.+ ....+ ...-......... -...............+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~--~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~ 75 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILS--LDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKED 75 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEE--GGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEe--ecccccccchhhH-hhccccccCCCCccccCHHHHHHH
Confidence 799999999999999999988 4432 2221 12222 1111111222221 111111111011356788888888
Q ss_pred HHHHhccCcEEE
Q 041194 184 LHEYLMTKRYLI 195 (418)
Q Consensus 184 l~~~L~~kr~Ll 195 (418)
|+...+++.+-+
T Consensus 76 l~~L~~g~~i~~ 87 (194)
T PF00485_consen 76 LKALKNGGSIEI 87 (194)
T ss_dssp HHHHHTTSCEEE
T ss_pred HHHHhCCCcccc
Confidence 888777776554
No 100
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.61 E-value=0.0016 Score=56.20 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=26.8
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCC-cceeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHY-FDCHAWI 142 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~-F~~~~wv 142 (418)
..-|.|.|++|+|||||++.+.+ .+++. |...-++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e--~L~~~g~kvgGf~ 40 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE--KLREKGYKVGGFI 40 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH--HHHhcCceeeeEE
Confidence 45689999999999999999998 55444 6554433
No 101
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.61 E-value=0.01 Score=62.49 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=39.5
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.++||-+..++.|.+++..+. -...+.++|..|+||||+|+.+.+
T Consensus 14 tFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAk 60 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAK 60 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999997664 345678999999999999999987
No 102
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.60 E-value=0.012 Score=59.23 Aligned_cols=48 Identities=17% Similarity=0.048 Sum_probs=39.0
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.-.+++|-+..++.|..++..+. -...+.++|+.|+||||+|..+.+.
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~ 61 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKA 61 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999988887653 3345789999999999999998873
No 103
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.59 E-value=0.015 Score=56.75 Aligned_cols=103 Identities=15% Similarity=0.150 Sum_probs=60.3
Q ss_pred HHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCc----ceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCc-
Q 041194 95 LLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF----DCHAWITEPYSNEYDADQILDIVIKFLMPSSRL- 169 (418)
Q Consensus 95 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F----~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~- 169 (418)
+-++|..+=+.-.++-|+|.+|+|||+||.++.-.......+ ...+|++ ....+++.++.+. ++.++.+...
T Consensus 91 lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~--te~~f~~~rl~~~-~~~~g~~~~~~ 167 (317)
T PRK04301 91 LDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID--TEGTFRPERIEQM-AEALGLDPDEV 167 (317)
T ss_pred HHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe--CCCCcCHHHHHHH-HHHcCCChHhh
Confidence 334443333457899999999999999999997642222111 3678999 8888888776543 4444432110
Q ss_pred -cc---cccCCH---HHHHHHHHHHhcc-Cc-EEEEEecc
Q 041194 170 -SE---IMDKNY---EMKKIILHEYLMT-KR-YLIVIDDF 200 (418)
Q Consensus 170 -~~---~~~~~~---~~l~~~l~~~L~~-kr-~LlVLDDv 200 (418)
.. ....+. ..+...+...+.. .+ -|||+|-+
T Consensus 168 l~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSi 207 (317)
T PRK04301 168 LDNIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSL 207 (317)
T ss_pred hccEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECc
Confidence 00 011111 2334555555544 33 48999965
No 104
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.57 E-value=0.0055 Score=55.48 Aligned_cols=57 Identities=18% Similarity=0.109 Sum_probs=35.8
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCC-CCCCHHHHHHHHHHHhCCC
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYS-NEYDADQILDIVIKFLMPS 166 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs-~~~~~~~ll~~il~~l~~~ 166 (418)
++||.++|+.|+||||.+-+++.....+ =..+..++ .. ......+-++...+.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis--~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALIS--ADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEE--ESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeec--CCCCCccHHHHHHHHHHHhccc
Confidence 4799999999999999776666532222 12234555 32 2234456677778887754
No 105
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.57 E-value=0.012 Score=54.69 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.6
Q ss_pred CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 103 PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 103 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.....+++|.|.+|+|||||++.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999999987
No 106
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.56 E-value=0.0045 Score=62.87 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=38.6
Q ss_pred CcccchhhHHHHHHHHhcC-----------CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCc
Q 041194 84 DTVGLDDRMEKLLDLLIEG-----------PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF 136 (418)
Q Consensus 84 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F 136 (418)
++.|.++.+++|.+.+.-. -...+-+.++|++|+|||+||+.+++ .....|
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f 245 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF 245 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE
Confidence 4568888888888877421 12355688999999999999999999 554444
No 107
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.56 E-value=0.008 Score=58.51 Aligned_cols=88 Identities=20% Similarity=0.127 Sum_probs=55.4
Q ss_pred CCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCC-ccccccCCHHHHHH
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSR-LSEIMDKNYEMKKI 182 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~-~~~~~~~~~~~l~~ 182 (418)
+.-+++-|+|++|+||||||.+++-. ....-...+|++ ....++.. .++.++.+.. ..-....+.++...
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId--~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~ 123 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFID--AEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALE 123 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEC--ccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHH
Confidence 55779999999999999999998762 323334567888 66666543 3344443211 00012334566666
Q ss_pred HHHHHhc-cCcEEEEEecc
Q 041194 183 ILHEYLM-TKRYLIVIDDF 200 (418)
Q Consensus 183 ~l~~~L~-~kr~LlVLDDv 200 (418)
.+...++ +.--+||+|.|
T Consensus 124 i~~~li~s~~~~lIVIDSv 142 (325)
T cd00983 124 IADSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHHHhccCCCEEEEcch
Confidence 6665554 35669999987
No 108
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0024 Score=66.94 Aligned_cols=102 Identities=17% Similarity=0.201 Sum_probs=66.5
Q ss_pred CCCCcccchhhHHHHHHHHhcC----CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHH
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEG----PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQIL 156 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll 156 (418)
-+.+-+|.++-+++|++.|.-. .-.-.++++||++|+|||+|++.++. .+.+.|= -++ ++.-.|..+|-
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkfv---R~s--LGGvrDEAEIR 393 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFV---RIS--LGGVRDEAEIR 393 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEE---EEe--cCccccHHHhc
Confidence 3567799999999999998642 33457999999999999999999999 7777762 233 44444444431
Q ss_pred HHHHHHhCCCCCccccccCCHHHHHHHHHHHhccCcEEEEEecc
Q 041194 157 DIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 157 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
+...+ ..+.+. ..+.+.+++. +.+.=|++||.+
T Consensus 394 --------GHRRT-YIGamP-GrIiQ~mkka-~~~NPv~LLDEI 426 (782)
T COG0466 394 --------GHRRT-YIGAMP-GKIIQGMKKA-GVKNPVFLLDEI 426 (782)
T ss_pred --------ccccc-ccccCC-hHHHHHHHHh-CCcCCeEEeech
Confidence 11100 012222 3334444433 456778899988
No 109
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.51 E-value=0.016 Score=61.60 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=40.0
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCC
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSY 131 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~ 131 (418)
.-++++|.+..+..+.+.+.... ...+.|+|++|+||||||+.+++...
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~~~--~~~vlL~Gp~GtGKTTLAr~i~~~~~ 200 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVASPF--PQHIILYGPPGVGKTTAARLALEEAK 200 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 34578999999999888875443 55799999999999999999988543
No 110
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.0045 Score=64.80 Aligned_cols=68 Identities=21% Similarity=0.344 Sum_probs=53.4
Q ss_pred CCCCcccchhhHHHHHHHHhc----CCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHH
Q 041194 81 KSRDTVGLDDRMEKLLDLLIE----GPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQI 155 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~l 155 (418)
-+.+-+|+++-+++|++.+.- ++.+-++++.+|++|||||++|+.++. .+.+.|-. ++ ++.-.|..+|
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFfR---fS--vGG~tDvAeI 480 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFFR---FS--VGGMTDVAEI 480 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceEE---Ee--ccccccHHhh
Confidence 356779999999999999864 345788999999999999999999999 77777632 34 5555555544
No 111
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.50 E-value=0.0071 Score=57.15 Aligned_cols=103 Identities=20% Similarity=0.212 Sum_probs=59.7
Q ss_pred HHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCc----ceeeeeecCCCCCCCHHHHHHHHHHHhCCCCC--
Q 041194 95 LLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF----DCHAWITEPYSNEYDADQILDIVIKFLMPSSR-- 168 (418)
Q Consensus 95 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F----~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~-- 168 (418)
|-++|..+=..-.+.=|+|.+|+|||.|+.+++-...+.... ...+|++ -...|+..++.+ |++....+..
T Consensus 27 lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid--Te~~f~~~Rl~~-i~~~~~~~~~~~ 103 (256)
T PF08423_consen 27 LDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID--TEGTFSPERLQQ-IAERFGLDPEEI 103 (256)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE--SSSSS-HHHHHH-HHHHTTS-HHHH
T ss_pred HHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe--CCCCCCHHHHHH-Hhhccccccchh
Confidence 334443332345688999999999999998887543332221 3478999 888898888754 5665433211
Q ss_pred ---ccccccCCHHHHHHHH---HHHhc-cCcEEEEEecc
Q 041194 169 ---LSEIMDKNYEMKKIIL---HEYLM-TKRYLIVIDDF 200 (418)
Q Consensus 169 ---~~~~~~~~~~~l~~~l---~~~L~-~kr~LlVLDDv 200 (418)
..-....+.+++...+ ...+. ++=-|||+|.+
T Consensus 104 l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 104 LDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred hhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecch
Confidence 0001233444544443 33332 34559999976
No 112
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.50 E-value=0.014 Score=62.13 Aligned_cols=47 Identities=23% Similarity=0.244 Sum_probs=39.9
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+
T Consensus 14 tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 34578999999999999998653 345788999999999999999887
No 113
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.49 E-value=0.016 Score=60.55 Aligned_cols=47 Identities=17% Similarity=0.164 Sum_probs=39.0
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|-+..++.|.+++..+. -...+.++|..|+||||+|+.+.+
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk 60 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAK 60 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999998653 234678999999999999999977
No 114
>PTZ00301 uridine kinase; Provisional
Probab=96.48 E-value=0.0024 Score=58.44 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 57999999999999999998877
No 115
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.48 E-value=0.0093 Score=60.88 Aligned_cols=47 Identities=21% Similarity=0.175 Sum_probs=39.6
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|-+..+..|..++..+. -...+.++|+.|+||||+|+.+.+
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk 62 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAK 62 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 44578999999999999988764 234678999999999999999988
No 116
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.46 E-value=0.0084 Score=65.70 Aligned_cols=53 Identities=21% Similarity=0.398 Sum_probs=41.0
Q ss_pred CCCcccchhhHHHHHHHHhc----CCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCc
Q 041194 82 SRDTVGLDDRMEKLLDLLIE----GPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF 136 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F 136 (418)
..+++|.++.++.|.+++.. +.....++.++|++|+|||++|+.+.+ .+...|
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~ 375 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKF 375 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCe
Confidence 34578999999999987642 223345899999999999999999999 554444
No 117
>PRK09354 recA recombinase A; Provisional
Probab=96.45 E-value=0.012 Score=57.67 Aligned_cols=97 Identities=23% Similarity=0.109 Sum_probs=60.1
Q ss_pred HHHHHh-cCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCC-cccc
Q 041194 95 LLDLLI-EGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSR-LSEI 172 (418)
Q Consensus 95 l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~-~~~~ 172 (418)
|-.+|- .+=+.-+++-|+|++|+||||||.++... ....=...+|++ .-..++.. .+++++.+.. ....
T Consensus 48 LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId--~E~s~~~~-----~a~~lGvdld~lli~ 118 (349)
T PRK09354 48 LDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFID--AEHALDPV-----YAKKLGVDIDNLLVS 118 (349)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEC--CccchHHH-----HHHHcCCCHHHeEEe
Confidence 334454 33356789999999999999999998763 333334567988 66666652 3455543211 0001
Q ss_pred ccCCHHHHHHHHHHHhc-cCcEEEEEecc
Q 041194 173 MDKNYEMKKIILHEYLM-TKRYLIVIDDF 200 (418)
Q Consensus 173 ~~~~~~~l~~~l~~~L~-~kr~LlVLDDv 200 (418)
...+.++....+...++ ++--+||+|-|
T Consensus 119 qp~~~Eq~l~i~~~li~s~~~~lIVIDSv 147 (349)
T PRK09354 119 QPDTGEQALEIADTLVRSGAVDLIVVDSV 147 (349)
T ss_pred cCCCHHHHHHHHHHHhhcCCCCEEEEeCh
Confidence 22345666666666554 35669999987
No 118
>PRK06526 transposase; Provisional
Probab=96.44 E-value=0.0022 Score=60.46 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=20.9
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..-+.++|++|+|||+||..+.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH
Confidence 345899999999999999999873
No 119
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.43 E-value=0.017 Score=57.49 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=39.8
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|.+..++.+.+++..+. -.+.+.++|++|+||||+|+.+.+
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~ 61 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILAR 61 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999997653 345888999999999999999987
No 120
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.43 E-value=0.009 Score=65.14 Aligned_cols=46 Identities=24% Similarity=0.234 Sum_probs=36.7
Q ss_pred CCcccchhhHHHHHHHHhcC-----------CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 83 RDTVGLDDRMEKLLDLLIEG-----------PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.++.|.++.+++|.+.+... -...+-+.++|.+|+|||+||+.+++
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 34779999999998877421 02346788999999999999999998
No 121
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.40 E-value=0.0024 Score=52.94 Aligned_cols=20 Identities=30% Similarity=0.280 Sum_probs=19.1
Q ss_pred EEEECCCCCchHHHHHHHHh
Q 041194 109 VAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~ 128 (418)
|.|.|.+|+||||+|+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999998
No 122
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.40 E-value=0.014 Score=60.53 Aligned_cols=50 Identities=22% Similarity=0.350 Sum_probs=36.4
Q ss_pred CCCCCcccchhhHHHHHHHHh---c-------CCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 80 SKSRDTVGLDDRMEKLLDLLI---E-------GPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 80 ~~~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..-.+++|.++.++++.+++. . +....+-+.++|++|+|||+||+.+.+.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 344577898888777766553 1 1123445889999999999999999983
No 123
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.39 E-value=0.016 Score=56.23 Aligned_cols=90 Identities=10% Similarity=0.105 Sum_probs=51.6
Q ss_pred cchhhHHHHHHHHhcC--CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhC
Q 041194 87 GLDDRMEKLLDLLIEG--PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLM 164 (418)
Q Consensus 87 Gr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~ 164 (418)
++....+...+++..- ....+-+.++|..|+|||.||..+++. +...=..+.+++ ..+++..+-....
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~--------~~~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLH--------FPEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEE--------HHHHHHHHHHHHh
Confidence 3444444455555432 123567899999999999999999994 432222245666 2345555544442
Q ss_pred CCCCccccccCCHHHHHHHHHHHhccCcEEEEEecc
Q 041194 165 PSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
.. +..+ .+.. + .+-=||||||+
T Consensus 205 ~~---------~~~~---~l~~-l-~~~dlLiIDDi 226 (306)
T PRK08939 205 DG---------SVKE---KIDA-V-KEAPVLMLDDI 226 (306)
T ss_pred cC---------cHHH---HHHH-h-cCCCEEEEecC
Confidence 11 1222 2222 2 34568999997
No 124
>PRK09183 transposase/IS protein; Provisional
Probab=96.38 E-value=0.016 Score=54.92 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.9
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+.|+|.+|+|||+||..+.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4677999999999999999977
No 125
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.37 E-value=0.0099 Score=63.08 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=39.3
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.++||-+..++.|.+.+..+. -...+.++|..|+||||+|+.+.+
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk 60 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAK 60 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 44678999999999999887664 335578999999999999999987
No 126
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.37 E-value=0.013 Score=54.06 Aligned_cols=74 Identities=12% Similarity=0.006 Sum_probs=40.6
Q ss_pred EEEEECCCCCchHHHHHHHHhcCCCCCC-cc-eeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccccccCCHHHHHHHHH
Q 041194 108 MVAILDSIGLDKTAFATEAYNSSYVKHY-FD-CHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILH 185 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d~~~~~~-F~-~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 185 (418)
+|+|.|.+|+||||||+.+.. .+... .. ....++ ...-+.....+...- .+..... ....+.+.+...|.
T Consensus 1 IigI~G~sGSGKTTla~~L~~--~l~~~~~~~~v~vi~--~D~f~~~~~~~~~~~-~~~~~g~---p~~~d~~~l~~~L~ 72 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA--LLSRWPDHPNVELIT--TDGFLYPNKELIERG-LMDRKGF---PESYDMEALLKFLK 72 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH--HHhhcCCCCcEEEEe--cCcccCcHHHHHHhh-hhhcCCC---cccCCHHHHHHHHH
Confidence 589999999999999999987 43210 11 233444 333332222222211 1111111 14567777777777
Q ss_pred HHhc
Q 041194 186 EYLM 189 (418)
Q Consensus 186 ~~L~ 189 (418)
..-.
T Consensus 73 ~l~~ 76 (220)
T cd02025 73 DIKS 76 (220)
T ss_pred HHHC
Confidence 6665
No 127
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.37 E-value=0.012 Score=60.35 Aligned_cols=74 Identities=18% Similarity=0.314 Sum_probs=46.1
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCCcc--eeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccccccCCHHHHHH
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHYFD--CHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKI 182 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~--~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~ 182 (418)
....+.|+|..|+|||+|++.+.+ .+..... ..++++ ..++...+...+.... ....
T Consensus 140 ~~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv~--------~~~f~~~~~~~l~~~~-----------~~~~ 198 (450)
T PRK14087 140 SYNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYMS--------GDEFARKAVDILQKTH-----------KEIE 198 (450)
T ss_pred ccCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEE--------HHHHHHHHHHHHHHhh-----------hHHH
Confidence 345689999999999999999998 4432221 223444 4567777766664211 1123
Q ss_pred HHHHHhccCcEEEEEecc
Q 041194 183 ILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 183 ~l~~~L~~kr~LlVLDDv 200 (418)
.+++.+. +.-+||+||+
T Consensus 199 ~~~~~~~-~~dvLiIDDi 215 (450)
T PRK14087 199 QFKNEIC-QNDVLIIDDV 215 (450)
T ss_pred HHHHHhc-cCCEEEEecc
Confidence 3444443 3458889998
No 128
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.36 E-value=0.014 Score=56.78 Aligned_cols=88 Identities=18% Similarity=0.120 Sum_probs=55.0
Q ss_pred CCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCC-ccccccCCHHHHHH
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSR-LSEIMDKNYEMKKI 182 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~-~~~~~~~~~~~l~~ 182 (418)
+.-+++-|+|.+|+||||||.++... ....=...+|++ ....++.. .+++++.+.. ..-....+.++...
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId--~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~ 123 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFID--AEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALE 123 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEc--ccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHH
Confidence 56789999999999999999988763 333334467888 65555543 3444543211 00012334556666
Q ss_pred HHHHHhc-cCcEEEEEecc
Q 041194 183 ILHEYLM-TKRYLIVIDDF 200 (418)
Q Consensus 183 ~l~~~L~-~kr~LlVLDDv 200 (418)
.+...++ +.--+||+|.|
T Consensus 124 ~~~~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 124 IAETLVRSGAVDIIVVDSV 142 (321)
T ss_pred HHHHHhhccCCcEEEEcch
Confidence 6655554 45679999987
No 129
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.36 E-value=0.023 Score=54.14 Aligned_cols=92 Identities=12% Similarity=0.001 Sum_probs=47.2
Q ss_pred CCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCH--HHHHHHHHHHhCCCCCccccccCCHHH-H
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDA--DQILDIVIKFLMPSSRLSEIMDKNYEM-K 180 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~--~~ll~~il~~l~~~~~~~~~~~~~~~~-l 180 (418)
...++|.++|++|+||||++..+.. .....=..+++++ . ..+.. .+-++...+..+.+.... ....+... .
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~--~l~~~g~~V~li~--~-D~~r~~a~~ql~~~~~~~~i~~~~~-~~~~dp~~~~ 143 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLAN--KLKKQGKSVLLAA--G-DTFRAAAIEQLEEWAKRLGVDVIKQ-KEGADPAAVA 143 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEe--C-CCCCHHHHHHHHHHHHhCCeEEEeC-CCCCCHHHHH
Confidence 3468999999999999998888876 3332212344554 2 22222 233444455554321000 01122222 2
Q ss_pred HHHHHHHhccCcEEEEEeccC
Q 041194 181 KIILHEYLMTKRYLIVIDDFE 201 (418)
Q Consensus 181 ~~~l~~~L~~kr~LlVLDDvp 201 (418)
...+.....+..=++++|-.+
T Consensus 144 ~~~l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 144 FDAIQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCC
Confidence 334444444445567777653
No 130
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.36 E-value=0.0081 Score=61.34 Aligned_cols=71 Identities=8% Similarity=0.136 Sum_probs=42.8
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccccccCCHHHHHHHHH
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILH 185 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 185 (418)
...+.|+|..|+|||+|++.+.+ .+...--..++++ ...+...+...+... . ...++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~--------~~~f~~~~~~~l~~~---------~----~~~f~ 197 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVR--------SELFTEHLVSAIRSG---------E----MQRFR 197 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEee--------HHHHHHHHHHHHhcc---------h----HHHHH
Confidence 46788999999999999999999 4432222234444 334445555554321 1 12244
Q ss_pred HHhccCcEEEEEecc
Q 041194 186 EYLMTKRYLIVIDDF 200 (418)
Q Consensus 186 ~~L~~kr~LlVLDDv 200 (418)
+.+. +.-+|++||+
T Consensus 198 ~~~~-~~dvLiIDDi 211 (445)
T PRK12422 198 QFYR-NVDALFIEDI 211 (445)
T ss_pred HHcc-cCCEEEEcch
Confidence 4443 3447888998
No 131
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.34 E-value=0.0085 Score=53.36 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=20.2
Q ss_pred EEEEECCCCCchHHHHHHHHhc
Q 041194 108 MVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999994
No 132
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.34 E-value=0.015 Score=56.69 Aligned_cols=105 Identities=12% Similarity=0.111 Sum_probs=59.4
Q ss_pred HHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCC----CcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCC
Q 041194 93 EKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKH----YFDCHAWITEPYSNEYDADQILDIVIKFLMPSSR 168 (418)
Q Consensus 93 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~----~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~ 168 (418)
..|-++|..+=+.-.++.|+|.+|+|||||+..++....... .-...+|++ -...++..++ .++++.++....
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyId--tE~~f~~~Rl-~~ia~~~~~~~~ 159 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYID--TEGTFRPERL-LAIAERYGLNPE 159 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEE--CCCCCCHHHH-HHHHHHcCCChH
Confidence 334444544435678999999999999999998875322211 112468998 7777777764 334554443211
Q ss_pred -----ccccccCCHHHHHHHH---HHHhc-cCcEEEEEecc
Q 041194 169 -----LSEIMDKNYEMKKIIL---HEYLM-TKRYLIVIDDF 200 (418)
Q Consensus 169 -----~~~~~~~~~~~l~~~l---~~~L~-~kr~LlVLDDv 200 (418)
..-....+.+++...+ ...+. .+--|||+|.+
T Consensus 160 ~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI 200 (316)
T TIGR02239 160 DVLDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSA 200 (316)
T ss_pred HhhccEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECc
Confidence 0001123344443333 33343 34558999965
No 133
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.34 E-value=0.01 Score=52.38 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=19.4
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
++.++|++|+||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998887
No 134
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.33 E-value=0.022 Score=55.37 Aligned_cols=65 Identities=14% Similarity=0.203 Sum_probs=44.1
Q ss_pred HHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCc----ceeeeeecCCCCCCCHHHHHHHHHHHhC
Q 041194 97 DLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF----DCHAWITEPYSNEYDADQILDIVIKFLM 164 (418)
Q Consensus 97 ~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F----~~~~wv~~~vs~~~~~~~ll~~il~~l~ 164 (418)
++|..+=+.-.++-|+|.+|+|||||+.+++-........ ...+||+ ....|+..++.+ +++.++
T Consensus 86 ~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~--te~~f~~~rl~~-~~~~~g 154 (310)
T TIGR02236 86 ELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID--TENTFRPERIMQ-MAEARG 154 (310)
T ss_pred HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE--CCCCCCHHHHHH-HHHHcC
Confidence 4443332457899999999999999999997643321111 2678999 888888877654 444444
No 135
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.32 E-value=0.0036 Score=57.17 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=22.5
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+|+|.|.+|+||||||+.+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999998
No 136
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.32 E-value=0.0051 Score=58.30 Aligned_cols=45 Identities=22% Similarity=0.186 Sum_probs=33.2
Q ss_pred CcccchhhHHHHHHHHhc----------C---CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 84 DTVGLDDRMEKLLDLLIE----------G---PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 84 ~~vGr~~~~~~l~~~L~~----------~---~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.++|.+..+++|.+.... + .+...-+.++|++|+||||+|+.+++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 478988887776544211 1 23456678999999999999999987
No 137
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.31 E-value=0.0035 Score=57.16 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.7
Q ss_pred CCceEEEEECCCCCchHHHHHHHHh
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+...+|+|+|.+|+||||||+.+..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999987
No 138
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.31 E-value=0.021 Score=52.28 Aligned_cols=46 Identities=26% Similarity=0.217 Sum_probs=37.7
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.++||-++-++++.-.-.+++ ..-+.|.||+|+||||-+..+.+
T Consensus 25 ~l~dIVGNe~tv~rl~via~~gn--mP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKEGN--MPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHcCC--CCceEeeCCCCCchhhHHHHHHH
Confidence 34578999999888877666654 67788999999999998888777
No 139
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.013 Score=60.51 Aligned_cols=93 Identities=17% Similarity=0.208 Sum_probs=64.2
Q ss_pred CCCcccchhhHHHHHHHHhcC---C-------CCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCC
Q 041194 82 SRDTVGLDDRMEKLLDLLIEG---P-------PQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYD 151 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~---~-------~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~ 151 (418)
-.++-|.+...++|.+++..- + ...+=|.++|++|+|||.||+.+.+ +..--| +. ++.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAg--el~vPf-----~~--isAp-- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAG--ELGVPF-----LS--ISAP-- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhh--hcCCce-----Ee--ecch--
Confidence 356778999999999887541 1 3466788999999999999999999 444333 33 3322
Q ss_pred HHHHHHHHHHHhCCCCCccccccCCHHHHHHHHHHHhccCcEEEEEecc
Q 041194 152 ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 152 ~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
+|++.. ...+++.+.+.+.+.-..-.+++++|++
T Consensus 258 ------eivSGv---------SGESEkkiRelF~~A~~~aPcivFiDeI 291 (802)
T KOG0733|consen 258 ------EIVSGV---------SGESEKKIRELFDQAKSNAPCIVFIDEI 291 (802)
T ss_pred ------hhhccc---------CcccHHHHHHHHHHHhccCCeEEEeecc
Confidence 222222 2345566666666666778899999998
No 140
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.27 E-value=0.026 Score=59.86 Aligned_cols=48 Identities=15% Similarity=0.003 Sum_probs=38.9
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.-.+++|-+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+.
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~ 61 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKA 61 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999887653 3455889999999999999988873
No 141
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.27 E-value=0.021 Score=54.89 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=31.1
Q ss_pred CcccchhhHHHHHHHHh---cC--------C--CCceEEEEECCCCCchHHHHHHHHh
Q 041194 84 DTVGLDDRMEKLLDLLI---EG--------P--PQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 84 ~~vGr~~~~~~l~~~L~---~~--------~--~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.++|.++.+++|.++.. .. . ....-+.++|.+|+||||+|+.+..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 56888877777666432 11 0 1123578999999999999977766
No 142
>PRK04040 adenylate kinase; Provisional
Probab=96.26 E-value=0.016 Score=52.01 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.++|+|+|++|+||||+++.+.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999999988
No 143
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.25 E-value=0.011 Score=62.71 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=39.3
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|-+..++.|.+++..+. -...+.++|..|+||||+|+.+.+
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~ 60 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAK 60 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHH
Confidence 34588999999999999887653 345678999999999999999987
No 144
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.24 E-value=0.023 Score=58.49 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=38.5
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.++||-+..++.|.+.+..+. -..-+.++|+.|+||||+|+.+..
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHH
Confidence 34578999999988888887653 234788999999999999998876
No 145
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.23 E-value=0.041 Score=54.13 Aligned_cols=105 Identities=12% Similarity=0.133 Sum_probs=62.0
Q ss_pred HHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCC----cceeeeeecCCCCCCCHHHHHHHHHHHhCCCCC
Q 041194 93 EKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHY----FDCHAWITEPYSNEYDADQILDIVIKFLMPSSR 168 (418)
Q Consensus 93 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~----F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~ 168 (418)
..|-++|..+=+.-.++-|+|.+|+|||+||..++-....... =...+|++ ....|++.++. +|++.++.+..
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyId--tE~~f~~eRl~-qia~~~~~~~~ 186 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYID--TEGTFRPQRLI-QIAERFGLNGA 186 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEE--CCCCccHHHHH-HHHHHcCCChh
Confidence 3344445444355778999999999999999988753222111 12578999 88888888764 45665544221
Q ss_pred -----ccccccCCHHHHHHHHH---HHh-ccCcEEEEEecc
Q 041194 169 -----LSEIMDKNYEMKKIILH---EYL-MTKRYLIVIDDF 200 (418)
Q Consensus 169 -----~~~~~~~~~~~l~~~l~---~~L-~~kr~LlVLDDv 200 (418)
.......+.+++...+. ..+ ..+--|||+|-+
T Consensus 187 ~~l~~i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI 227 (342)
T PLN03186 187 DVLENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSA 227 (342)
T ss_pred hhccceEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCc
Confidence 00012234444443333 223 335568999965
No 146
>PRK06921 hypothetical protein; Provisional
Probab=96.22 E-value=0.019 Score=54.51 Aligned_cols=37 Identities=22% Similarity=0.160 Sum_probs=28.3
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCC-cceeeeee
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHY-FDCHAWIT 143 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~-F~~~~wv~ 143 (418)
...-+.++|..|+|||.||..+.+ .+... -..+++++
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEE
Confidence 356789999999999999999999 55443 23446666
No 147
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.21 E-value=0.03 Score=56.96 Aligned_cols=91 Identities=14% Similarity=0.057 Sum_probs=50.2
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCC-CcceeeeeecCCCCCC--CHHHHHHHHHHHhCCCCCccccccCCHHHHH
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKH-YFDCHAWITEPYSNEY--DADQILDIVIKFLMPSSRLSEIMDKNYEMKK 181 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~-~F~~~~wv~~~vs~~~--~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~ 181 (418)
...+|.++|.+|+||||+|..++. .+.. .+. .+-|+ . ..+ ...+.++.+..+++.+.... ....+.....
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~--~L~~~g~k-V~lV~--~-D~~R~aa~eQL~~la~~~gvp~~~~-~~~~d~~~i~ 166 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR--YFKKKGLK-VGLVA--A-DTYRPAAYDQLKQLAEKIGVPFYGD-PDNKDAVEIA 166 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHHcCCe-EEEec--C-CCCCHHHHHHHHHHHHHcCCcEEec-CCccCHHHHH
Confidence 478999999999999999998887 3332 232 23333 2 222 33455666677765432100 0112333333
Q ss_pred HHHHHHhccCcEEEEEeccCCC
Q 041194 182 IILHEYLMTKRYLIVIDDFEDG 203 (418)
Q Consensus 182 ~~l~~~L~~kr~LlVLDDvp~~ 203 (418)
....+.+.+. =+||+|..+..
T Consensus 167 ~~al~~~~~~-DvVIIDTAGr~ 187 (437)
T PRK00771 167 KEGLEKFKKA-DVIIVDTAGRH 187 (437)
T ss_pred HHHHHHhhcC-CEEEEECCCcc
Confidence 3333333444 57888887433
No 148
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.21 E-value=0.02 Score=56.32 Aligned_cols=31 Identities=10% Similarity=-0.002 Sum_probs=26.1
Q ss_pred CCceEEEEECCCCCchHHHHHHHHhcCCCCCCc
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF 136 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F 136 (418)
..+..++|||++|+|||.+|+.+++ +..-.|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~--elg~~~ 176 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFK--KMGIEP 176 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHH--HcCCCe
Confidence 4578999999999999999999999 554443
No 149
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.21 E-value=0.03 Score=58.01 Aligned_cols=48 Identities=13% Similarity=0.035 Sum_probs=39.4
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.-.+++|-+..+..|...+..+. -..-+.++|+.|+||||+|+.+++.
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~ 66 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKA 66 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHH
Confidence 44578999999999988877653 3457889999999999999999883
No 150
>PRK10867 signal recognition particle protein; Provisional
Probab=96.21 E-value=0.025 Score=57.39 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=20.8
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+|.++|.+|+||||+|..+..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999997777766
No 151
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.21 E-value=0.031 Score=56.64 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=21.2
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...++.++|.+|+||||.|..++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 367999999999999999888776
No 152
>PRK06547 hypothetical protein; Provisional
Probab=96.19 E-value=0.0078 Score=53.29 Aligned_cols=26 Identities=23% Similarity=0.052 Sum_probs=23.3
Q ss_pred CCceEEEEECCCCCchHHHHHHHHhc
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
....+|+|.|.+|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999873
No 153
>CHL00176 ftsH cell division protein; Validated
Probab=96.19 E-value=0.0067 Score=64.58 Aligned_cols=94 Identities=13% Similarity=0.241 Sum_probs=56.5
Q ss_pred CCCCcccchhhHHHHHHHH---hcC-------CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCC
Q 041194 81 KSRDTVGLDDRMEKLLDLL---IEG-------PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEY 150 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L---~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~ 150 (418)
.-.++.|.++.++++.+.+ ... ....+-+.++|++|+|||+||+.+++. ... -|+. ++.
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~-----p~i~--is~-- 249 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEV-----PFFS--ISG-- 249 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCC-----Ceee--ccH--
Confidence 4456889887777766654 221 123456899999999999999999983 322 2333 321
Q ss_pred CHHHHHHHHHHHhCCCCCccccccCCHHHHHHHHHHHhccCcEEEEEecc
Q 041194 151 DADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 151 ~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
.++.. ... ......+...+........++|++||+
T Consensus 250 --s~f~~----~~~---------g~~~~~vr~lF~~A~~~~P~ILfIDEI 284 (638)
T CHL00176 250 --SEFVE----MFV---------GVGAARVRDLFKKAKENSPCIVFIDEI 284 (638)
T ss_pred --HHHHH----Hhh---------hhhHHHHHHHHHHHhcCCCcEEEEecc
Confidence 11111 000 011223344455555678899999998
No 154
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.18 E-value=0.018 Score=56.48 Aligned_cols=35 Identities=11% Similarity=-0.001 Sum_probs=26.5
Q ss_pred eEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 107 SMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
.-+.++|..|+|||.||..+.+ .+...-..+++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~--~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAK--ELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHH--HHHHCCCeEEEEE
Confidence 6799999999999999999999 4333222445665
No 155
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.18 E-value=0.025 Score=59.93 Aligned_cols=47 Identities=15% Similarity=0.170 Sum_probs=38.8
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.++||-+..++.|.+++..+. -...+.++|..|+||||+|+.+.+
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk 60 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAK 60 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 34578998888888999887763 345678999999999999999966
No 156
>PRK06762 hypothetical protein; Provisional
Probab=96.18 E-value=0.0045 Score=54.19 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|.|+|++|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999988
No 157
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.17 E-value=0.004 Score=52.81 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=19.6
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999986
No 158
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.15 E-value=0.038 Score=54.86 Aligned_cols=86 Identities=19% Similarity=0.169 Sum_probs=49.1
Q ss_pred CceEEEEECCCCCchHH-HHHHHHhcCCCCCCcceeeeeecCCCCCC--CHHHHHHHHHHHhCCCCCccccccCCHHHHH
Q 041194 105 QRSMVAILDSIGLDKTA-FATEAYNSSYVKHYFDCHAWITEPYSNEY--DADQILDIVIKFLMPSSRLSEIMDKNYEMKK 181 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTt-LA~~v~~d~~~~~~F~~~~wv~~~vs~~~--~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~ 181 (418)
+-++|++||+.|+|||| ||+..+.-....++ ..++.++ . .++ ...+-++.-.+-++.+-. ...+..++.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-~kVaiIT--t-DtYRIGA~EQLk~Ya~im~vp~~----vv~~~~el~ 273 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKK-KKVAIIT--T-DTYRIGAVEQLKTYADIMGVPLE----VVYSPKELA 273 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccC-cceEEEE--e-ccchhhHHHHHHHHHHHhCCceE----EecCHHHHH
Confidence 37999999999999977 77777662211222 2345555 2 222 334455556666665543 345566666
Q ss_pred HHHHHHhccCcEEEEEecc
Q 041194 182 IILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 182 ~~l~~~L~~kr~LlVLDDv 200 (418)
..+... +++. +|.+|=+
T Consensus 274 ~ai~~l-~~~d-~ILVDTa 290 (407)
T COG1419 274 EAIEAL-RDCD-VILVDTA 290 (407)
T ss_pred HHHHHh-hcCC-EEEEeCC
Confidence 655543 3443 4444543
No 159
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.14 E-value=0.019 Score=57.09 Aligned_cols=86 Identities=20% Similarity=0.180 Sum_probs=49.9
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCCc--ceeeeeecCCC-CCCCHHHHHHHHHHHhCCCCCccccccCCHHHHH
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHYF--DCHAWITEPYS-NEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKK 181 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F--~~~~wv~~~vs-~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~ 181 (418)
.-.++.++|+.|+||||++.++.. .....+ ..+..++ .. ......+-++...+.++.+.. ...+..++.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~--~~~~~~G~~~V~lit--~D~~R~ga~EqL~~~a~~~gv~~~----~~~~~~~l~ 207 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAA--RCVMRFGASKVALLT--TDSYRIGGHEQLRIFGKILGVPVH----AVKDGGDLQ 207 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCeEEEEe--cccccccHHHHHHHHHHHcCCceE----ecCCcccHH
Confidence 457999999999999999999987 322222 2344554 21 123445566666666665432 222333344
Q ss_pred HHHHHHhccCcEEEEEecc
Q 041194 182 IILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 182 ~~l~~~L~~kr~LlVLDDv 200 (418)
..+. .+.++ -+|++|..
T Consensus 208 ~~l~-~l~~~-DlVLIDTa 224 (374)
T PRK14722 208 LALA-ELRNK-HMVLIDTI 224 (374)
T ss_pred HHHH-HhcCC-CEEEEcCC
Confidence 4343 34454 45558887
No 160
>PRK05642 DNA replication initiation factor; Validated
Probab=96.12 E-value=0.015 Score=54.18 Aligned_cols=36 Identities=8% Similarity=0.150 Sum_probs=26.5
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
...+.|+|..|+|||.|++.+++ .....-...+|++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~ 80 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLP 80 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEee
Confidence 46789999999999999999987 3322222345766
No 161
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.11 E-value=0.0047 Score=45.82 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.9
Q ss_pred EEEEECCCCCchHHHHHHHHhc
Q 041194 108 MVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d 129 (418)
+|+|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999883
No 162
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.08 E-value=0.056 Score=52.64 Aligned_cols=101 Identities=13% Similarity=0.111 Sum_probs=60.1
Q ss_pred HHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCC----cceeeeeecCCCCCCCHHHHHHHHHHHhCCCCC----
Q 041194 97 DLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHY----FDCHAWITEPYSNEYDADQILDIVIKFLMPSSR---- 168 (418)
Q Consensus 97 ~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~----F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~---- 168 (418)
++|..+=+.-+++-|+|.+|+|||+|+.+++-....... =...+|++ ....|++.++.+ +++.++.+..
T Consensus 87 ~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId--tE~~f~~eRi~~-~a~~~g~d~~~~l~ 163 (313)
T TIGR02238 87 GILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID--TEGTFRPDRIRA-IAERFGVDPDAVLD 163 (313)
T ss_pred HHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE--cCCCCCHHHHHH-HHHHcCCChHHhcC
Confidence 344443355789999999999999999887643232211 13578999 888888888764 5666654321
Q ss_pred -ccccccCCHHHHH---HHHHHHhc-cCcEEEEEecc
Q 041194 169 -LSEIMDKNYEMKK---IILHEYLM-TKRYLIVIDDF 200 (418)
Q Consensus 169 -~~~~~~~~~~~l~---~~l~~~L~-~kr~LlVLDDv 200 (418)
.......+.++.. ..+...+. ++--|||+|.+
T Consensus 164 ~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSi 200 (313)
T TIGR02238 164 NILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSI 200 (313)
T ss_pred cEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcc
Confidence 0001122344443 33333343 34558999975
No 163
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.07 E-value=0.026 Score=57.20 Aligned_cols=90 Identities=9% Similarity=0.156 Sum_probs=49.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCC-Cc-cccccCCHH-----
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSS-RL-SEIMDKNYE----- 178 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~-~~-~~~~~~~~~----- 178 (418)
-..++|+|..|+|||||++.+..... .....+|.. --+.-+..++....+....... .. .+.+.....
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~li--Gergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~ 239 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALV--GERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAP 239 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeec--ccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHH
Confidence 45789999999999999998876321 223444543 2244455555554444432110 00 000111111
Q ss_pred HHHHHHHHHh--ccCcEEEEEecc
Q 041194 179 MKKIILHEYL--MTKRYLIVIDDF 200 (418)
Q Consensus 179 ~l~~~l~~~L--~~kr~LlVLDDv 200 (418)
...-.+.+++ +++.+|+++||+
T Consensus 240 ~~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 240 LTATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1112233443 489999999998
No 164
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.07 E-value=0.02 Score=57.42 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=39.5
Q ss_pred CCcccchhhHHHHHHHHhcC------------CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCc
Q 041194 83 RDTVGLDDRMEKLLDLLIEG------------PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF 136 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F 136 (418)
..++|.++.++.+.-.+... +...+-|.++|++|+|||++|+.+.. .+...|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~--~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH--HhCCeE
Confidence 45789999888887666531 12346789999999999999999998 554444
No 165
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.07 E-value=0.025 Score=61.82 Aligned_cols=54 Identities=15% Similarity=0.294 Sum_probs=42.9
Q ss_pred CCCCcccchhhHHHHHHHHhcC----CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCc
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEG----PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF 136 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F 136 (418)
-+.+.+|.++.+++|+++|... .....++.++|++|+||||+|+.+.. .....|
T Consensus 320 l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~ 377 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKY 377 (784)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCE
Confidence 3467899999999999988741 23456899999999999999999998 444444
No 166
>PRK03839 putative kinase; Provisional
Probab=96.06 E-value=0.0047 Score=54.91 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=19.9
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.|.|+|++|+||||+|+.+++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999999
No 167
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.04 E-value=0.037 Score=52.75 Aligned_cols=96 Identities=18% Similarity=0.076 Sum_probs=60.2
Q ss_pred HHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHH-hCC---CCCcccc
Q 041194 97 DLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKF-LMP---SSRLSEI 172 (418)
Q Consensus 97 ~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~-l~~---~~~~~~~ 172 (418)
++|-.+=+.-+++=|+|+.|+||||+|.+++-. .+..-...+|++ --..+++..+.. +... +.. ..+ .
T Consensus 51 ~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fID--tE~~l~p~r~~~-l~~~~~d~l~v~~~---~ 122 (279)
T COG0468 51 EALGGGLPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFID--TEHALDPERAKQ-LGVDLLDNLLVSQP---D 122 (279)
T ss_pred HHhcCCcccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEe--CCCCCCHHHHHH-HHHhhhcceeEecC---C
Confidence 333333356789999999999999999998873 444444779999 888888886543 3333 222 111 1
Q ss_pred ccCCHHHHHHHHHHHhccCcEEEEEecc
Q 041194 173 MDKNYEMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 173 ~~~~~~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
......++...+......+--|||+|-|
T Consensus 123 ~~e~q~~i~~~~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 123 TGEQQLEIAEKLARSGAEKIDLLVVDSV 150 (279)
T ss_pred CHHHHHHHHHHHHHhccCCCCEEEEecC
Confidence 1222333444444444445679999976
No 168
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.026 Score=54.07 Aligned_cols=80 Identities=10% Similarity=0.100 Sum_probs=50.9
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCC--CCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccccccCCHHHHHH
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYV--KHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKI 182 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~--~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~ 182 (418)
..++|.++|++|.|||+|.+.+++.-.+ .+.|....-+. .+...++...++.-+ .-...+-+
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE------inshsLFSKWFsESg----------KlV~kmF~ 239 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE------INSHSLFSKWFSESG----------KLVAKMFQ 239 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE------EehhHHHHHHHhhhh----------hHHHHHHH
Confidence 4688999999999999999999995433 33443333333 234455555544332 23456667
Q ss_pred HHHHHhccCc--EEEEEecc
Q 041194 183 ILHEYLMTKR--YLIVIDDF 200 (418)
Q Consensus 183 ~l~~~L~~kr--~LlVLDDv 200 (418)
.+.+.+.++. +++.+|.|
T Consensus 240 kI~ELv~d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 240 KIQELVEDRGNLVFVLIDEV 259 (423)
T ss_pred HHHHHHhCCCcEEEEEeHHH
Confidence 7777777655 45566776
No 169
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.03 E-value=0.03 Score=52.57 Aligned_cols=92 Identities=10% Similarity=0.045 Sum_probs=55.0
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecC----CCCCCCHHHHHHHHHHHhCCCCCccc--cccCCHH
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEP----YSNEYDADQILDIVIKFLMPSSRLSE--IMDKNYE 178 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~----vs~~~~~~~ll~~il~~l~~~~~~~~--~~~~~~~ 178 (418)
.-.+++|||..|+|||||++.+.. -..-. .+.++..+- .+ .....+-..+++..++....... ....+-.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~--L~~pt-~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG--LEEPT-SGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc--CcCCC-CceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 356899999999999999999998 33322 333443300 11 11233456667777665332111 1222333
Q ss_pred HHH-HHHHHHhccCcEEEEEecc
Q 041194 179 MKK-IILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 179 ~l~-~~l~~~L~~kr~LlVLDDv 200 (418)
+.+ -.+.+.|.-+.=|+|.|.-
T Consensus 114 QrQRi~IARALal~P~liV~DEp 136 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEP 136 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCc
Confidence 333 3477778889999999984
No 170
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.02 E-value=0.065 Score=52.77 Aligned_cols=100 Identities=16% Similarity=0.173 Sum_probs=59.5
Q ss_pred HHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCC---C-cceeeeeecCCCCCCCHHHHHHHHHHHhCCCCC-----
Q 041194 98 LLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKH---Y-FDCHAWITEPYSNEYDADQILDIVIKFLMPSSR----- 168 (418)
Q Consensus 98 ~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~---~-F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~----- 168 (418)
+|..+=+.-.+.-|+|.+|+|||+|+.+++-...... . -...+|++ -..+|++.++.+ +++.++.+..
T Consensus 118 lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId--TE~tF~peRl~~-ia~~~g~d~~~~l~~ 194 (344)
T PLN03187 118 LLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID--TEGTFRPDRIVP-IAERFGMDADAVLDN 194 (344)
T ss_pred hcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE--cCCCCCHHHHHH-HHHHcCCChhhhcCe
Confidence 3433324567888999999999999998864323211 1 13568999 888899888765 4565554321
Q ss_pred ccccccCCHHHHHHH---HHHHhc-cCcEEEEEecc
Q 041194 169 LSEIMDKNYEMKKII---LHEYLM-TKRYLIVIDDF 200 (418)
Q Consensus 169 ~~~~~~~~~~~l~~~---l~~~L~-~kr~LlVLDDv 200 (418)
..-....+.+++... +...+. ++--|||+|.+
T Consensus 195 I~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSi 230 (344)
T PLN03187 195 IIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSV 230 (344)
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 000223344444333 323332 33458899965
No 171
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.01 E-value=0.032 Score=56.02 Aligned_cols=46 Identities=13% Similarity=0.053 Sum_probs=38.1
Q ss_pred CCcccchhhHHHHHHHHhcCCC--------CceEEEEECCCCCchHHHHHHHHh
Q 041194 83 RDTVGLDDRMEKLLDLLIEGPP--------QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+++|-+..++.|.+++..+.. -..-+.++|+.|+||||+|+.+.+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4688999999999999986531 345688999999999999999876
No 172
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.99 E-value=0.034 Score=60.71 Aligned_cols=47 Identities=21% Similarity=0.195 Sum_probs=36.5
Q ss_pred CCCcccchhhHHHHHHHHhc-----------CCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIE-----------GPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.++.|.+..++.|.+.+.. +-...+-+.++|++|+|||+||+.+.+
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~ 509 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVAT 509 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34677888888888887642 112345688999999999999999999
No 173
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.99 E-value=0.019 Score=57.59 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=40.3
Q ss_pred CCCcccchhhHHHHHHHHhcC------------CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCc
Q 041194 82 SRDTVGLDDRMEKLLDLLIEG------------PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF 136 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F 136 (418)
...++|.++.++.+..++... +...+-|.++|++|+|||+||+.+.. .+...|
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk--~l~~~f 78 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPF 78 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH--HhCChh
Confidence 346899999999998888541 11246789999999999999999988 444434
No 174
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.98 E-value=0.014 Score=63.51 Aligned_cols=47 Identities=15% Similarity=0.243 Sum_probs=37.9
Q ss_pred CCCcccchhhHHHHHHHHhcC-------CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIEG-------PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...++|-++.++.|.+.+... +....++.++|+.|+|||+||+.+..
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~ 506 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE 506 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH
Confidence 467789999999988887642 12344688999999999999999998
No 175
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.98 E-value=0.017 Score=55.05 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 92 MEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 92 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+++.+.... +-+.++|+.|+|||++++...+
T Consensus 22 ~~~ll~~l~~~~---~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 22 YSYLLDLLLSNG---RPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp HHHHHHHHHHCT---EEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CcEEEECCCCCchhHHHHhhhc
Confidence 355666666553 5678999999999999999887
No 176
>PRK06217 hypothetical protein; Validated
Probab=95.98 E-value=0.015 Score=51.85 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=20.3
Q ss_pred EEEEECCCCCchHHHHHHHHhc
Q 041194 108 MVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-|.|.|.+|+||||||+.+...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999984
No 177
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.95 E-value=0.013 Score=49.55 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=29.4
Q ss_pred hhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 90 DRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 90 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
++.+++-+.|...=..-.+|.+.|.-|+|||||++.+.+.
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4455555555443223468999999999999999999984
No 178
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.95 E-value=0.024 Score=57.21 Aligned_cols=89 Identities=9% Similarity=0.109 Sum_probs=51.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCC-CHHHHHHHHHHHhCCCCCccc--cccCC-HHH--
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEY-DADQILDIVIKFLMPSSRLSE--IMDKN-YEM-- 179 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~-~~~~ll~~il~~l~~~~~~~~--~~~~~-~~~-- 179 (418)
-..++|+|..|+|||||++.+.+. .. .+..+.+- +++.. .+.++.++++..-+.....-- ..... ...
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~--~~--~dv~Vi~l--IGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRG--TT--ADVIVVGL--VGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccC--CC--CCEEEEEE--EcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 457899999999999999999873 22 24555555 65544 445566665443211110000 01111 111
Q ss_pred ---HHHHHHHHh--ccCcEEEEEecc
Q 041194 180 ---KKIILHEYL--MTKRYLIVIDDF 200 (418)
Q Consensus 180 ---l~~~l~~~L--~~kr~LlVLDDv 200 (418)
..-.+.+++ +++.+|+++||+
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 112244444 589999999999
No 179
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.95 E-value=0.043 Score=54.66 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=21.6
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..++|+++|.+|+||||++..+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999998876
No 180
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.94 E-value=0.013 Score=54.27 Aligned_cols=43 Identities=14% Similarity=0.294 Sum_probs=29.5
Q ss_pred ccchhhH-HHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 86 VGLDDRM-EKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 86 vGr~~~~-~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.|..+.. ..+.++.. .......+.|+|..|+|||+||+.+++.
T Consensus 22 ~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 22 AGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred cCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3544443 44444433 2234567889999999999999999983
No 181
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.93 E-value=0.038 Score=53.06 Aligned_cols=79 Identities=13% Similarity=0.042 Sum_probs=44.6
Q ss_pred CCceEEEEECCCCCchHHHHHHHHhcCCCCCCc-c-eeeeeecCCCCCCCHHHHHHHHHHHhCC--CCCccccccCCHHH
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF-D-CHAWITEPYSNEYDADQILDIVIKFLMP--SSRLSEIMDKNYEM 179 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F-~-~~~wv~~~vs~~~~~~~ll~~il~~l~~--~~~~~~~~~~~~~~ 179 (418)
....+|+|.|..|+||||+|+.+.. .+.... . ....++ ...-......+.. .+. .... ....+.+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~--~D~f~~~~~~l~~----~g~~~~~g~--P~s~D~~~ 129 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELIT--TDGFLHPNQVLKE----RNLMKKKGF--PESYDMHR 129 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEe--cccccccHHHHHH----cCCccccCC--ChhccHHH
Confidence 4578999999999999999987755 222111 1 123333 2222222222222 221 1111 25567788
Q ss_pred HHHHHHHHhccCc
Q 041194 180 KKIILHEYLMTKR 192 (418)
Q Consensus 180 l~~~l~~~L~~kr 192 (418)
+...+...-.++.
T Consensus 130 l~~~L~~Lk~g~~ 142 (290)
T TIGR00554 130 LVKFLSDLKSGKP 142 (290)
T ss_pred HHHHHHHHHCCCC
Confidence 8888877766653
No 182
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.91 E-value=0.0068 Score=53.98 Aligned_cols=24 Identities=13% Similarity=0.165 Sum_probs=22.0
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..++|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999987
No 183
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.01 Score=63.58 Aligned_cols=46 Identities=17% Similarity=0.329 Sum_probs=37.3
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-..++||++++.++++.|.....+.. .++|.+|+|||++|.-++.
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~ 213 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQ 213 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHH
Confidence 446789999999999999998643333 3689999999998777666
No 184
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.88 E-value=0.057 Score=50.34 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=37.3
Q ss_pred HHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHH
Q 041194 96 LDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIV 159 (418)
Q Consensus 96 ~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~i 159 (418)
-++|..+=+.-.++.|.|.+|+|||+||.++... ..+ .=...+|++ ... ++.++.+.+
T Consensus 11 D~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~-~~~-~ge~~lyvs--~ee--~~~~i~~~~ 68 (237)
T TIGR03877 11 DEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GLQ-MGEPGIYVA--LEE--HPVQVRRNM 68 (237)
T ss_pred HHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHH-HHH-cCCcEEEEE--eeC--CHHHHHHHH
Confidence 3444444356789999999999999999886542 122 234567777 443 455555553
No 185
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.87 E-value=0.049 Score=57.39 Aligned_cols=46 Identities=22% Similarity=0.119 Sum_probs=39.1
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|-+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk 57 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILAR 57 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999997653 345678999999999999999987
No 186
>PRK05439 pantothenate kinase; Provisional
Probab=95.87 E-value=0.05 Score=52.74 Aligned_cols=82 Identities=12% Similarity=0.055 Sum_probs=46.2
Q ss_pred CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCc--ceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccccccCCHHHH
Q 041194 103 PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF--DCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMK 180 (418)
Q Consensus 103 ~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F--~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l 180 (418)
....-+|+|.|.+|+||||+|+.+.. .+.... ....-++ ...-+...+.+.. ..+...... .+.-|.+.+
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~--~DdFy~~~~~l~~--~~l~~~kg~--Pes~D~~~l 154 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVT--TDGFLYPNAVLEE--RGLMKRKGF--PESYDMRAL 154 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEe--ccccccCHHHHhh--hhccccCCC--cccccHHHH
Confidence 35678999999999999999998877 333221 1222333 3222222222221 111111111 134577778
Q ss_pred HHHHHHHhccCc
Q 041194 181 KIILHEYLMTKR 192 (418)
Q Consensus 181 ~~~l~~~L~~kr 192 (418)
...|.....|+.
T Consensus 155 ~~~L~~Lk~G~~ 166 (311)
T PRK05439 155 LRFLSDVKSGKP 166 (311)
T ss_pred HHHHHHHHcCCC
Confidence 888887777765
No 187
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.86 E-value=0.039 Score=48.61 Aligned_cols=45 Identities=20% Similarity=0.205 Sum_probs=34.1
Q ss_pred cccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 85 TVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 85 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
++|.+..+.++++.+..-.....-|.|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888888888763333456779999999999999999994
No 188
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.86 E-value=0.0076 Score=52.83 Aligned_cols=23 Identities=9% Similarity=0.183 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...|.++|++|+||||+|+.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999998
No 189
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.83 E-value=0.014 Score=52.65 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=22.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..+|+|-||-|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 579999999999999999999994
No 190
>PTZ00035 Rad51 protein; Provisional
Probab=95.83 E-value=0.12 Score=50.77 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=58.7
Q ss_pred HHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCC---C-CcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCC-
Q 041194 94 KLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVK---H-YFDCHAWITEPYSNEYDADQILDIVIKFLMPSSR- 168 (418)
Q Consensus 94 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~---~-~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~- 168 (418)
.|-++|..+=+.-.++.|+|.+|+|||||+..+.-..+.- . .=...+|++ -...++..++ .++++.++....
T Consensus 106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyId--tE~~f~~eri-~~ia~~~g~~~~~ 182 (337)
T PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYID--TEGTFRPERI-VQIAERFGLDPED 182 (337)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEE--ccCCCCHHHH-HHHHHHhCCChHh
Confidence 3444444443567899999999999999999887533321 1 112356998 7777777764 334555443211
Q ss_pred ----ccccccCCHHHHHHHHH---HHhc-cCcEEEEEecc
Q 041194 169 ----LSEIMDKNYEMKKIILH---EYLM-TKRYLIVIDDF 200 (418)
Q Consensus 169 ----~~~~~~~~~~~l~~~l~---~~L~-~kr~LlVLDDv 200 (418)
..-....+.+++...+. ..+. ++--|||+|-+
T Consensus 183 ~l~nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSi 222 (337)
T PTZ00035 183 VLDNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSA 222 (337)
T ss_pred HhhceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 00012233444444332 2332 34568999965
No 191
>PRK14974 cell division protein FtsY; Provisional
Probab=95.81 E-value=0.035 Score=54.51 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=33.6
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCC-CcceeeeeecCCCCCC--CHHHHHHHHHHHhCC
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKH-YFDCHAWITEPYSNEY--DADQILDIVIKFLMP 165 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~-~F~~~~wv~~~vs~~~--~~~~ll~~il~~l~~ 165 (418)
...+|.++|++|+||||++..++. .+.. .+. .+.+. ...+ ...+-++.....++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~--~l~~~g~~-V~li~---~Dt~R~~a~eqL~~~a~~lgv 196 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY--YLKKNGFS-VVIAA---GDTFRAGAIEQLEEHAERLGV 196 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH--HHHHcCCe-EEEec---CCcCcHHHHHHHHHHHHHcCC
Confidence 468999999999999997777766 2222 232 22333 2333 233445666666664
No 192
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.80 E-value=0.012 Score=59.91 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=37.4
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 83 RDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..++|+++.++.+...+..+. -|.|.|.+|+|||+||+.+..
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHH
Confidence 357999999999999998774 578999999999999999998
No 193
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.80 E-value=0.032 Score=52.86 Aligned_cols=94 Identities=17% Similarity=0.129 Sum_probs=55.6
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCC--CCCcceeeeeecCCCCCC-CHHHHHHHHHHHhCCCCCccc---cccCCHHH
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYV--KHYFDCHAWITEPYSNEY-DADQILDIVIKFLMPSSRLSE---IMDKNYEM 179 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~--~~~F~~~~wv~~~vs~~~-~~~~ll~~il~~l~~~~~~~~---~~~~~~~~ 179 (418)
-.-++|.|-.|+|||+|+..+.++..+ +.+-+..+++- +++.. +..++.+++...=......-- .+......
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~--IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAA--MGITMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEE--eccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 346799999999999999999885331 12246677877 77654 556677666553211111000 01111111
Q ss_pred -----HHHHHHHHhc---cCcEEEEEeccC
Q 041194 180 -----KKIILHEYLM---TKRYLIVIDDFE 201 (418)
Q Consensus 180 -----l~~~l~~~L~---~kr~LlVLDDvp 201 (418)
..-.+.++++ +|++|+++||++
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 1233555553 689999999983
No 194
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.79 E-value=0.0064 Score=54.94 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.8
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+|+|.|.+|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 195
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.73 E-value=0.012 Score=55.89 Aligned_cols=22 Identities=18% Similarity=0.077 Sum_probs=17.8
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..|.|+|.+|+||||+|+.+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~ 23 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKK 23 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHH
Confidence 4689999999999999999987
No 196
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.73 E-value=0.048 Score=55.40 Aligned_cols=86 Identities=20% Similarity=0.110 Sum_probs=45.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCC--HHHHHHHHHHHhCCCCCccccccCCHHHHHHH
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYD--ADQILDIVIKFLMPSSRLSEIMDKNYEMKKII 183 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~--~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~ 183 (418)
.+++.++|++|+||||++..+.........-..++.|+ .. ++. ..+-++...+.++.+.. ...+..++...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~--~D-~~r~~a~eqL~~~a~~~~vp~~----~~~~~~~l~~~ 293 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT--LD-TYRIGAVEQLKTYAKIMGIPVE----VVYDPKELAKA 293 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE--CC-ccHHHHHHHHHHHHHHhCCceE----ccCCHHhHHHH
Confidence 46999999999999998887765211012122344555 32 221 12223333444443221 22344555555
Q ss_pred HHHHhccCcEEEEEecc
Q 041194 184 LHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 184 l~~~L~~kr~LlVLDDv 200 (418)
+.+ +. ..=+|++|..
T Consensus 294 l~~-~~-~~DlVlIDt~ 308 (424)
T PRK05703 294 LEQ-LR-DCDVILIDTA 308 (424)
T ss_pred HHH-hC-CCCEEEEeCC
Confidence 554 23 3457777864
No 197
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.73 E-value=0.0086 Score=53.10 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=20.8
Q ss_pred eEEEEECCCCCchHHHHHHHHhc
Q 041194 107 SMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.+++|+|++|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999873
No 198
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.71 E-value=0.067 Score=55.30 Aligned_cols=47 Identities=13% Similarity=0.039 Sum_probs=38.9
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|-+..++.|.+++..+. -...+.++|+.|+||||+|+.+..
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 34578899999999999997753 245667899999999999999877
No 199
>PRK00625 shikimate kinase; Provisional
Probab=95.71 E-value=0.0084 Score=53.16 Aligned_cols=21 Identities=14% Similarity=0.146 Sum_probs=19.6
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.|.++||+|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988
No 200
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.70 E-value=0.063 Score=53.72 Aligned_cols=87 Identities=11% Similarity=0.105 Sum_probs=49.5
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCC-Cc-ceeeeeecCCCCCCC--HHHHHHHHHHHhCCCCCccccccCCHHHH
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKH-YF-DCHAWITEPYSNEYD--ADQILDIVIKFLMPSSRLSEIMDKNYEMK 180 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~-~F-~~~~wv~~~vs~~~~--~~~ll~~il~~l~~~~~~~~~~~~~~~~l 180 (418)
..++|.++|..|+||||.+..+........ .- ..+..++ . .++. ..+-++...+.++.+-. ...+.+++
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit--~-Dt~R~aa~eQL~~~a~~lgvpv~----~~~~~~~l 245 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIIT--I-DNYRIGAKKQIQTYGDIMGIPVK----AIESFKDL 245 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEe--c-cCccHHHHHHHHHHhhcCCcceE----eeCcHHHH
Confidence 467999999999999999888876322111 11 1233444 2 2332 22335555665555322 23344555
Q ss_pred HHHHHHHhccCcEEEEEecc
Q 041194 181 KIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 181 ~~~l~~~L~~kr~LlVLDDv 200 (418)
...+.+. .+.-+|++|..
T Consensus 246 ~~~L~~~--~~~DlVLIDTa 263 (388)
T PRK12723 246 KEEITQS--KDFDLVLVDTI 263 (388)
T ss_pred HHHHHHh--CCCCEEEEcCC
Confidence 5555543 34567778876
No 201
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.70 E-value=0.045 Score=60.55 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=37.9
Q ss_pred CCCcccchhhHHHHHHHHhcC-------CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIEG-------PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...++|.+..++.|.+.+... +....++.++|+.|+|||+||+.+.+
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 457889999999988888632 12235788999999999999999987
No 202
>PRK08149 ATP synthase SpaL; Validated
Probab=95.70 E-value=0.03 Score=56.57 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=49.9
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCC-CCCCHHHHHHHHHHHhCCCCCc--cc-cccCC-----
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYS-NEYDADQILDIVIKFLMPSSRL--SE-IMDKN----- 176 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs-~~~~~~~ll~~il~~l~~~~~~--~~-~~~~~----- 176 (418)
-..++|+|..|+|||||++.+.+.... +..+... +. +..+..++..+.+......... .. .+...
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~~----dv~v~g~--Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSEA----DVFVIGL--IGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCCC----CeEEEEE--EeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 457899999999999999999883222 2222232 33 3345666666666543221100 00 01111
Q ss_pred HHHHHHHHHHHh--ccCcEEEEEecc
Q 041194 177 YEMKKIILHEYL--MTKRYLIVIDDF 200 (418)
Q Consensus 177 ~~~l~~~l~~~L--~~kr~LlVLDDv 200 (418)
.....-.+.+++ ++|.+||++||+
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccch
Confidence 111222334444 489999999999
No 203
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.68 E-value=0.014 Score=53.58 Aligned_cols=86 Identities=14% Similarity=0.169 Sum_probs=49.9
Q ss_pred eEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCC-CCHHHHHHHHHHHhCCCCCc--cccccCC-H-----
Q 041194 107 SMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNE-YDADQILDIVIKFLMPSSRL--SEIMDKN-Y----- 177 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~-~~~~~ll~~il~~l~~~~~~--~~~~~~~-~----- 177 (418)
.-++|.|.+|+|||+|+..+.++.. =+..+++- +++. ....++.+++...-..+... ....... .
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~--iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYAL--IGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEE--ESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeee--ccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 4689999999999999999998532 22336666 6644 45556666664331100000 0000111 1
Q ss_pred ----HHHHHHHHHHhccCcEEEEEecc
Q 041194 178 ----EMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 178 ----~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
-...++++. ++|.+|+++||+
T Consensus 90 ~~~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 90 PYTALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHH--TTSEEEEEEETH
T ss_pred hccchhhhHHHhh--cCCceeehhhhh
Confidence 112334444 689999999997
No 204
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.67 E-value=0.029 Score=56.34 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.9
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..++.++|.+|+||||++..+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 205
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.67 E-value=0.057 Score=51.69 Aligned_cols=89 Identities=12% Similarity=0.117 Sum_probs=48.6
Q ss_pred CCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccc---cccCCHHHH
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSE---IMDKNYEMK 180 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~---~~~~~~~~l 180 (418)
.+..++.|+|.+|+|||||...+.+ .+.......+...+ .. +..+ .+.++..+.+.-... .-..+...+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~~~~VI~gD-~~---t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv 173 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM--RLKDSVPCAVIEGD-QQ---TVND--AARIRATGTPAIQVNTGKGCHLDAQMI 173 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HhccCCCEEEECCC-cC---cHHH--HHHHHhcCCcEEEecCCCCCcCcHHHH
Confidence 4689999999999999999999998 55444433332221 22 2211 122333333210000 012234445
Q ss_pred HHHHHHHhccCcEEEEEecc
Q 041194 181 KIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 181 ~~~l~~~L~~kr~LlVLDDv 200 (418)
...+.......-=+||+++|
T Consensus 174 ~~Al~~L~~~~~d~liIEnv 193 (290)
T PRK10463 174 ADAAPRLPLDDNGILFIENV 193 (290)
T ss_pred HHHHHHHhhcCCcEEEEECC
Confidence 55566554444567788876
No 206
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.64 E-value=0.011 Score=54.05 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=25.7
Q ss_pred HHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 98 LLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 98 ~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
|+..+....+.|.|+|++|+|||||++.+..
T Consensus 5 ~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 5 WLFNKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred cccCCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 3444455788999999999999999999976
No 207
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.64 E-value=0.069 Score=51.84 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=37.4
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 84 DTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 84 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.++|-+....++..+.........-+.++|++|+||||+|..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~ 47 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKE 47 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHH
Confidence 4677888888999998865433446899999999999999999873
No 208
>PRK14531 adenylate kinase; Provisional
Probab=95.64 E-value=0.03 Score=50.01 Aligned_cols=22 Identities=18% Similarity=0.139 Sum_probs=20.0
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+.|.|+|++|+||||+++.+..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999988
No 209
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.64 E-value=0.045 Score=51.87 Aligned_cols=88 Identities=15% Similarity=0.080 Sum_probs=49.0
Q ss_pred ceEEEEECCCCCchHHHH-HHHHhcCCCCCCccee-eeeecCCCCCC-CHHHHHHHHHHHhCCCCCcc--cc-ccCCH--
Q 041194 106 RSMVAILDSIGLDKTAFA-TEAYNSSYVKHYFDCH-AWITEPYSNEY-DADQILDIVIKFLMPSSRLS--EI-MDKNY-- 177 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA-~~v~~d~~~~~~F~~~-~wv~~~vs~~~-~~~~ll~~il~~l~~~~~~~--~~-~~~~~-- 177 (418)
-.-++|.|..|+|||+|| ..+.+ ... -+.. +++- ++... ...++.+++...-......- .. +....
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~--~~~--~~v~~V~~~--iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIIN--QKG--KKVYCIYVA--IGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHH--hcC--CCeEEEEEe--cccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 346899999999999996 66666 222 2333 4555 66553 45566666654321110000 00 11111
Q ss_pred -------HHHHHHHHHHhccCcEEEEEeccC
Q 041194 178 -------EMKKIILHEYLMTKRYLIVIDDFE 201 (418)
Q Consensus 178 -------~~l~~~l~~~L~~kr~LlVLDDvp 201 (418)
-...+.++. ++|.+||++||+.
T Consensus 143 ~~a~~~a~aiAE~fr~--~G~~Vlvl~DslT 171 (274)
T cd01132 143 YLAPYTGCAMGEYFMD--NGKHALIIYDDLS 171 (274)
T ss_pred HHHHHHHHHHHHHHHH--CCCCEEEEEcChH
Confidence 123344444 4799999999983
No 210
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.63 E-value=0.083 Score=47.24 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=26.0
Q ss_pred HHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 94 KLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 94 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.|.+.+..+. -...+.++|+.|+||||+|+.+.+
T Consensus 3 ~l~~~i~~~~-~~~~~L~~G~~G~gkt~~a~~~~~ 36 (188)
T TIGR00678 3 QLKRALEKGR-LAHAYLFAGPEGVGKELLALALAK 36 (188)
T ss_pred HHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4555555442 346788999999999999998877
No 211
>PRK14528 adenylate kinase; Provisional
Probab=95.62 E-value=0.03 Score=50.22 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=20.0
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+.|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~ 23 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCE 23 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999987
No 212
>PRK04296 thymidine kinase; Provisional
Probab=95.62 E-value=0.015 Score=52.27 Aligned_cols=85 Identities=12% Similarity=-0.085 Sum_probs=46.0
Q ss_pred eEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccccccCCHHHHHHHHHH
Q 041194 107 SMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHE 186 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 186 (418)
.++.|+|..|.||||+|...... ...+-...+.+. ..++.......+++.++.+... ......+++...+++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k----~~~d~~~~~~~i~~~lg~~~~~--~~~~~~~~~~~~~~~ 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK----PAIDDRYGEGKVVSRIGLSREA--IPVSSDTDIFELIEE 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe----ccccccccCCcEecCCCCcccc--eEeCChHHHHHHHHh
Confidence 57889999999999999888873 322222223332 1112222233445555432210 112334555555555
Q ss_pred HhccCcEEEEEecc
Q 041194 187 YLMTKRYLIVIDDF 200 (418)
Q Consensus 187 ~L~~kr~LlVLDDv 200 (418)
..++--+||+|.+
T Consensus 75 -~~~~~dvviIDEa 87 (190)
T PRK04296 75 -EGEKIDCVLIDEA 87 (190)
T ss_pred -hCCCCCEEEEEcc
Confidence 3334458999986
No 213
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.61 E-value=0.061 Score=53.64 Aligned_cols=98 Identities=18% Similarity=0.114 Sum_probs=55.0
Q ss_pred HHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccc-
Q 041194 93 EKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSE- 171 (418)
Q Consensus 93 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~- 171 (418)
..|-+.|..+=..-.++.|.|.+|+|||||+.++... ....-...+|++ ... +..++.. -++.++.......
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs--~EE--s~~qi~~-Ra~rlg~~~~~l~l 141 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVS--GEE--SPEQIKL-RADRLGISTENLYL 141 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEE--CCc--CHHHHHH-HHHHcCCCcccEEE
Confidence 3344444443234579999999999999999998873 322223566777 432 2333322 2344543221100
Q ss_pred cccCCHHHHHHHHHHHhccCcEEEEEecc
Q 041194 172 IMDKNYEMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 172 ~~~~~~~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
....+.+.+.+.+. ..+.-+||+|.+
T Consensus 142 ~~e~~le~I~~~i~---~~~~~lVVIDSI 167 (372)
T cd01121 142 LAETNLEDILASIE---ELKPDLVIIDSI 167 (372)
T ss_pred EccCcHHHHHHHHH---hcCCcEEEEcch
Confidence 12234455544443 246678999987
No 214
>PRK13947 shikimate kinase; Provisional
Probab=95.59 E-value=0.0097 Score=52.28 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=19.7
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999998
No 215
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.58 E-value=0.0086 Score=53.74 Aligned_cols=22 Identities=23% Similarity=0.135 Sum_probs=20.3
Q ss_pred EEEEECCCCCchHHHHHHHHhc
Q 041194 108 MVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d 129 (418)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999983
No 216
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.57 E-value=0.034 Score=56.73 Aligned_cols=92 Identities=11% Similarity=0.146 Sum_probs=55.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCC-CHHHHHHHHHHHhCCCCCcc--cc-ccCC-----
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEY-DADQILDIVIKFLMPSSRLS--EI-MDKN----- 176 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~-~~~~ll~~il~~l~~~~~~~--~~-~~~~----- 176 (418)
-.-++|.|.+|+|||||+.++.+.... .+-+..+++- ++... .+.++..++...-......- .+ +...
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~l--iGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAG--VGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEc--CCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 346899999999999999888874222 2456777776 76543 55567666654321111000 00 1111
Q ss_pred HHHHHHHHHHHh---ccCcEEEEEecc
Q 041194 177 YEMKKIILHEYL---MTKRYLIVIDDF 200 (418)
Q Consensus 177 ~~~l~~~l~~~L---~~kr~LlVLDDv 200 (418)
.....-.+.+++ ++|.+||++||+
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccc
Confidence 111233455665 379999999999
No 217
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.56 E-value=0.045 Score=57.55 Aligned_cols=71 Identities=13% Similarity=0.228 Sum_probs=43.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcc--eeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccccccCCHHHHHHH
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFD--CHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKII 183 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~--~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~ 183 (418)
...+.|+|..|+|||.|++.+.+ .....+. .+.+++ ..+++.++...+... . ...
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yit--------aeef~~el~~al~~~---------~----~~~ 370 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVS--------SEEFTNEFINSIRDG---------K----GDS 370 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEee--------HHHHHHHHHHHHHhc---------c----HHH
Confidence 34689999999999999999999 4443332 234554 344555555444321 1 122
Q ss_pred HHHHhccCcEEEEEecc
Q 041194 184 LHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 184 l~~~L~~kr~LlVLDDv 200 (418)
+++.+.+ -=+|+|||+
T Consensus 371 f~~~y~~-~DLLlIDDI 386 (617)
T PRK14086 371 FRRRYRE-MDILLVDDI 386 (617)
T ss_pred HHHHhhc-CCEEEEehh
Confidence 3333332 347888998
No 218
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.55 E-value=0.01 Score=52.53 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=20.8
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
++|+|+|+.|+||||||+.+.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999998
No 219
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.55 E-value=0.05 Score=55.13 Aligned_cols=90 Identities=12% Similarity=0.112 Sum_probs=50.6
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCC-CHHHHHHHHHHHhCCCCCcc--ccccC-CHHH-
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEY-DADQILDIVIKFLMPSSRLS--EIMDK-NYEM- 179 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~-~~~~ll~~il~~l~~~~~~~--~~~~~-~~~~- 179 (418)
.-..++|+|..|+|||||++.+.+... -+..+++- ++... .+.++..+.+..-+.....- ..... ....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~--iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~ 230 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGL--IGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRR 230 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEE--EecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHH
Confidence 456789999999999999999998322 13444454 54443 44456555544322111000 00111 1111
Q ss_pred ----HHHHHHHHh--ccCcEEEEEecc
Q 041194 180 ----KKIILHEYL--MTKRYLIVIDDF 200 (418)
Q Consensus 180 ----l~~~l~~~L--~~kr~LlVLDDv 200 (418)
..-.+.+++ ++|.+|+++||+
T Consensus 231 ~a~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 231 QAAYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 122244444 589999999999
No 220
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.54 E-value=0.12 Score=47.77 Aligned_cols=38 Identities=24% Similarity=0.215 Sum_probs=27.8
Q ss_pred CCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
+.-.++.|.|.+|+||||||.++... -.+ .-...+|++
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~-~~~-~g~~~~~is 55 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYK-GLR-DGDPVIYVT 55 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHH-HHh-cCCeEEEEE
Confidence 45679999999999999999987642 122 224567887
No 221
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.53 E-value=0.035 Score=50.68 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=18.7
Q ss_pred EEEECCCCCchHHHHHHHHh
Q 041194 109 VAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~ 128 (418)
|.|.|++|+||||+|+.+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999987
No 222
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.52 E-value=0.071 Score=49.49 Aligned_cols=98 Identities=18% Similarity=0.152 Sum_probs=56.4
Q ss_pred HHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCC-------
Q 041194 96 LDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSR------- 168 (418)
Q Consensus 96 ~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~------- 168 (418)
-++|..+=+.-.++.|+|.+|+|||+||.++... .++. =...+|++ ...+ ..++.+++ .+++-...
T Consensus 15 D~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~~-g~~~~y~~--~e~~--~~~~~~~~-~~~g~~~~~~~~~g~ 87 (234)
T PRK06067 15 DRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYG-ALKQ-GKKVYVIT--TENT--SKSYLKQM-ESVKIDISDFFLWGY 87 (234)
T ss_pred HHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHH-HHhC-CCEEEEEE--cCCC--HHHHHHHH-HHCCCChhHHHhCCC
Confidence 3334344356789999999999999999998542 2222 23467887 6543 45555553 33332110
Q ss_pred c------c---ccccCCHHHHHHHHHHHhcc-CcEEEEEecc
Q 041194 169 L------S---EIMDKNYEMKKIILHEYLMT-KRYLIVIDDF 200 (418)
Q Consensus 169 ~------~---~~~~~~~~~l~~~l~~~L~~-kr~LlVLDDv 200 (418)
. + .....+.+.+...+.+.+.. +.-++|+|.+
T Consensus 88 l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~ 129 (234)
T PRK06067 88 LRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSL 129 (234)
T ss_pred ceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecH
Confidence 0 0 00122345666677776654 4557888864
No 223
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.52 E-value=0.013 Score=51.71 Aligned_cols=24 Identities=21% Similarity=0.101 Sum_probs=21.8
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+|.|+|++|+||||+|+.+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999999988
No 224
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.52 E-value=0.017 Score=51.46 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=30.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
.++|.|+|+.|+|||||++.+.. .....|...++-+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 57899999999999999999999 6777786555554
No 225
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.51 E-value=0.034 Score=50.95 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=19.4
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 226
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.50 E-value=0.01 Score=50.51 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=19.8
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+|.|+|.+|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999998
No 227
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.46 E-value=0.018 Score=52.23 Aligned_cols=82 Identities=11% Similarity=0.117 Sum_probs=44.4
Q ss_pred eEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHH-HHHHHHHHHhCCCCCccccccCCHHHHHHHHH
Q 041194 107 SMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDAD-QILDIVIKFLMPSSRLSEIMDKNYEMKKIILH 185 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~-~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 185 (418)
.+|.|+|..|+||||++..+.. .+......++++- ..+.... .-...++.+- + ...+.......++
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~---e~~~E~~~~~~~~~i~q~----~----vg~~~~~~~~~i~ 68 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTI---EDPIEFVHESKRSLINQR----E----VGLDTLSFENALK 68 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEE---cCCccccccCccceeeec----c----cCCCccCHHHHHH
Confidence 3789999999999999998877 4443444444433 1111100 0000011110 0 0112233455677
Q ss_pred HHhccCcEEEEEeccC
Q 041194 186 EYLMTKRYLIVIDDFE 201 (418)
Q Consensus 186 ~~L~~kr~LlVLDDvp 201 (418)
..|....=.|++|.+.
T Consensus 69 ~aLr~~pd~ii~gEir 84 (198)
T cd01131 69 AALRQDPDVILVGEMR 84 (198)
T ss_pred HHhcCCcCEEEEcCCC
Confidence 7776667788889873
No 228
>CHL00181 cbbX CbbX; Provisional
Probab=95.46 E-value=0.022 Score=54.81 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=32.4
Q ss_pred CCcccchhhHHHHHHHHh---cC----------CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 83 RDTVGLDDRMEKLLDLLI---EG----------PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~---~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+++|.++.+++|.++.. -. ......+.++|.+|+||||+|+.+++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 357888777776655531 11 11233578899999999999999977
No 229
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.46 E-value=0.01 Score=52.85 Aligned_cols=21 Identities=38% Similarity=0.466 Sum_probs=19.8
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+|+|.|.+|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999988
No 230
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.46 E-value=0.013 Score=51.90 Aligned_cols=22 Identities=9% Similarity=0.144 Sum_probs=20.8
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
++|.+.|++|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999988
No 231
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.45 E-value=0.069 Score=59.21 Aligned_cols=47 Identities=21% Similarity=0.279 Sum_probs=38.7
Q ss_pred CCCcccchhhHHHHHHHHhcC-----C--CCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIEG-----P--PQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~-----~--~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...++|.+..++.+.+.+... + ....++.++|++|+|||++|+.+..
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~ 617 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE 617 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999998752 1 1245788999999999999999998
No 232
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.44 E-value=0.062 Score=53.30 Aligned_cols=89 Identities=11% Similarity=0.015 Sum_probs=50.8
Q ss_pred CCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCC-CCCHHHHHHHHHHHhCCCCCccccccCCHHHHHH
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSN-EYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKI 182 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~-~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~ 182 (418)
...++++++|+.|+||||++..+... ....=..+.+++ ... .....+-++...+.++.+.. ...+..++..
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lIt--aDtyR~gAveQLk~yae~lgvpv~----~~~dp~dL~~ 275 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFIT--TDTFRSGAVEQFQGYADKLDVELI----VATSPAELEE 275 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEe--CCccCccHHHHHHHHhhcCCCCEE----ecCCHHHHHH
Confidence 35789999999999999999888763 211112345565 321 12234445555555544321 2345666655
Q ss_pred HHHHHhc-cCcEEEEEecc
Q 041194 183 ILHEYLM-TKRYLIVIDDF 200 (418)
Q Consensus 183 ~l~~~L~-~kr~LlVLDDv 200 (418)
.+...-. +..=+|++|-.
T Consensus 276 al~~l~~~~~~D~VLIDTA 294 (407)
T PRK12726 276 AVQYMTYVNCVDHILIDTV 294 (407)
T ss_pred HHHHHHhcCCCCEEEEECC
Confidence 5544321 34456777765
No 233
>PRK10536 hypothetical protein; Provisional
Probab=95.43 E-value=0.033 Score=52.28 Aligned_cols=57 Identities=9% Similarity=0.105 Sum_probs=42.6
Q ss_pred CCCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceee
Q 041194 80 SKSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHA 140 (418)
Q Consensus 80 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~ 140 (418)
.+...+.++......++.+|... .++.+.|.+|+|||+||..+..+.-..+.|+..+
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 44556778999999999988653 3999999999999999999887422234455433
No 234
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.42 E-value=0.048 Score=56.29 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=21.5
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+|+|+|.+|+||||++..+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988876
No 235
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.41 E-value=0.083 Score=53.44 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=21.5
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+|.++|.+|+||||+|..+..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999888876
No 236
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.39 E-value=0.081 Score=58.04 Aligned_cols=47 Identities=21% Similarity=0.128 Sum_probs=39.2
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 82 SRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-.+++|.+..++.|..++..+. -...+.++|..|+||||+|+.+.+.
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~ 60 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARS 60 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999998654 2356789999999999999999773
No 237
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.054 Score=57.02 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=53.9
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCC--CCHHHHHHH
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNE--YDADQILDI 158 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~--~~~~~ll~~ 158 (418)
.+.+++--...+++..+.....--...-|-|.|..|+|||+||+.+++... +++.-...+|+ .+.- -....+++
T Consensus 406 ~e~d~i~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~--Cs~l~~~~~e~iQk- 481 (952)
T KOG0735|consen 406 FEHDFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVS--CSTLDGSSLEKIQK- 481 (952)
T ss_pred CCCceeecchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEe--chhccchhHHHHHH-
Confidence 344555444444444443333223345688999999999999999999432 22222333554 3221 11111111
Q ss_pred HHHHhCCCCCccccccCCHHHHHHHHHHHhccCcEEEEEecc
Q 041194 159 VIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 159 il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
.+...+.+.+....-+|||||+
T Consensus 482 --------------------~l~~vfse~~~~~PSiIvLDdl 503 (952)
T KOG0735|consen 482 --------------------FLNNVFSEALWYAPSIIVLDDL 503 (952)
T ss_pred --------------------HHHHHHHHHHhhCCcEEEEcch
Confidence 2223445566678899999999
No 238
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.37 E-value=0.015 Score=48.62 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=19.8
Q ss_pred EEEECCCCCchHHHHHHHHhcCCCCCCcce
Q 041194 109 VAILDSIGLDKTAFATEAYNSSYVKHYFDC 138 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~d~~~~~~F~~ 138 (418)
|-|+|.+|+||||+|+.+.. .+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE
Confidence 57899999999999999999 67777753
No 239
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.32 E-value=0.12 Score=55.89 Aligned_cols=86 Identities=21% Similarity=0.214 Sum_probs=45.5
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCC--HHHHHHHHHHHhCCCCCccccccCCHHHHHHH
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYD--ADQILDIVIKFLMPSSRLSEIMDKNYEMKKII 183 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~--~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~ 183 (418)
..|++++|+.|+||||++.++.........-..+..++ . ..+. ..+-++...+.++.+.. ...+.+++...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit--~-Dt~RigA~eQL~~~a~~~gvpv~----~~~~~~~l~~a 257 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLT--T-DSFRIGALEQLRIYGRILGVPVH----AVKDAADLRFA 257 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEec--C-cccchHHHHHHHHHHHhCCCCcc----ccCCHHHHHHH
Confidence 57999999999999998888876321111112334444 2 2222 33455555555554332 22344555444
Q ss_pred HHHHhccCcEEEEEecc
Q 041194 184 LHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 184 l~~~L~~kr~LlVLDDv 200 (418)
+.+ ++++. +|++|=.
T Consensus 258 l~~-~~~~D-~VLIDTA 272 (767)
T PRK14723 258 LAA-LGDKH-LVLIDTV 272 (767)
T ss_pred HHH-hcCCC-EEEEeCC
Confidence 443 33333 5555554
No 240
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.32 E-value=0.012 Score=50.45 Aligned_cols=22 Identities=9% Similarity=0.256 Sum_probs=19.7
Q ss_pred EEEEECCCCCchHHHHHHHHhc
Q 041194 108 MVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d 129 (418)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999883
No 241
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.32 E-value=0.048 Score=51.71 Aligned_cols=56 Identities=18% Similarity=0.165 Sum_probs=34.6
Q ss_pred hhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHH
Q 041194 90 DRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQIL 156 (418)
Q Consensus 90 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll 156 (418)
+-++++..++..+ .-+.+.|.+|+|||+||+.+.+ .....| .+++ .+...+..+++
T Consensus 9 ~l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~--~lg~~~---~~i~--~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR--KRDRPV---MLIN--GDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH--HhCCCE---EEEe--CCccCCHHHHh
Confidence 3345555555443 3556899999999999999987 443322 3444 44444444443
No 242
>PRK15453 phosphoribulokinase; Provisional
Probab=95.32 E-value=0.096 Score=49.87 Aligned_cols=81 Identities=12% Similarity=0.092 Sum_probs=43.9
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCCcce-eeeeecCCCC--CCCHHHHHHHHHH--HhCCCCCccccccCCHHH
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDC-HAWITEPYSN--EYDADQILDIVIK--FLMPSSRLSEIMDKNYEM 179 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~-~~wv~~~vs~--~~~~~~ll~~il~--~l~~~~~~~~~~~~~~~~ 179 (418)
...+|+|.|.+|+||||+|+.+.+ .+.. ... .+.++ ... .++..+.-..+.. .-+.+-..-..+..+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~--if~~-~~~~~~vi~--~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dl 78 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK--IFRR-ENINAAVVE--GDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDE 78 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHhh-cCCCeEEEe--cccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHH
Confidence 467999999999999999998876 2221 111 23333 211 1233332222211 111111110025567788
Q ss_pred HHHHHHHHhcc
Q 041194 180 KKIILHEYLMT 190 (418)
Q Consensus 180 l~~~l~~~L~~ 190 (418)
+.+.++++.++
T Consensus 79 L~~~l~~l~~~ 89 (290)
T PRK15453 79 LEQLFREYGET 89 (290)
T ss_pred HHHHHHHHhcC
Confidence 88888887654
No 243
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.31 E-value=0.015 Score=49.45 Aligned_cols=21 Identities=10% Similarity=0.322 Sum_probs=19.5
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+|+|+|+.|+|||||++.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999998
No 244
>PF14516 AAA_35: AAA-like domain
Probab=95.31 E-value=0.19 Score=49.32 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=70.3
Q ss_pred cCCCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCC----C-CCHH
Q 041194 79 SSKSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSN----E-YDAD 153 (418)
Q Consensus 79 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~----~-~~~~ 153 (418)
+.+.+-.|.|...-+++.+.|...+ ..+.|.|+-.+|||+|...+.+..+- ..+.+ ++++ +.. . .+..
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~~G---~~~~I~apRq~GKTSll~~l~~~l~~-~~~~~-v~id--~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQPG---SYIRIKAPRQMGKTSLLLRLLERLQQ-QGYRC-VYID--LQQLGSAIFSDLE 79 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhcCC---CEEEEECcccCCHHHHHHHHHHHHHH-CCCEE-EEEE--eecCCCcccCCHH
Confidence 3455667788867777777776642 58999999999999999999874322 24443 4665 432 1 2455
Q ss_pred HHHHHHHH----HhCCCCCccc---cccCCHHHHHHHHHHHh---ccCcEEEEEecc
Q 041194 154 QILDIVIK----FLMPSSRLSE---IMDKNYEMKKIILHEYL---MTKRYLIVIDDF 200 (418)
Q Consensus 154 ~ll~~il~----~l~~~~~~~~---~~~~~~~~l~~~l~~~L---~~kr~LlVLDDv 200 (418)
++++.++. +++.+..... ............+.+++ .+++.+|+||++
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEi 136 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEI 136 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEech
Confidence 55555544 4443322111 01113334445555543 258999999998
No 245
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.31 E-value=0.018 Score=49.94 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=20.9
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..||-|.|.+|+||||||+.+..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~ 24 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER 24 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999998
No 246
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.29 E-value=0.077 Score=53.91 Aligned_cols=91 Identities=10% Similarity=0.134 Sum_probs=49.7
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccccccCC---HH---
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKN---YE--- 178 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~---~~--- 178 (418)
.-..++|.|..|+|||||++.+....... ...++.. -.+.....++.+.+...-......--....+ ..
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~i--Ger~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALI--GERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEE--ccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 35688999999999999999998743221 2334433 2334455555555543321111000000111 11
Q ss_pred --HHHHHHHHHh--ccCcEEEEEecc
Q 041194 179 --MKKIILHEYL--MTKRYLIVIDDF 200 (418)
Q Consensus 179 --~l~~~l~~~L--~~kr~LlVLDDv 200 (418)
...-.+.+++ ++|.+|+++||+
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 237 AAYVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccch
Confidence 1122344444 479999999999
No 247
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.29 E-value=0.017 Score=52.20 Aligned_cols=25 Identities=12% Similarity=0.035 Sum_probs=22.8
Q ss_pred CCceEEEEECCCCCchHHHHHHHHh
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+..+|+|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999988
No 248
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.29 E-value=0.023 Score=59.26 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=27.0
Q ss_pred HHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 96 LDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 96 ~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+.|....+...+|+|.|.+|+||||||+.+..
T Consensus 55 ~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 55 CQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred HHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHh
Confidence 344444555688999999999999999999987
No 249
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.28 E-value=0.056 Score=57.06 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=40.2
Q ss_pred CCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCC
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMP 165 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~ 165 (418)
+.-++..++|++|+||||||.-++++.- |. ++=|+ .|..-+...+-+.|...+..
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG----Ys-VvEIN--ASDeRt~~~v~~kI~~avq~ 378 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG----YS-VVEIN--ASDERTAPMVKEKIENAVQN 378 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC----ce-EEEec--ccccccHHHHHHHHHHHHhh
Confidence 4678999999999999999999998422 22 34566 67777776666666655543
No 250
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.28 E-value=0.073 Score=53.89 Aligned_cols=88 Identities=11% Similarity=0.116 Sum_probs=50.8
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCC-CHHHHHHHHHHHhCCCCCcc--ccccCCH----
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEY-DADQILDIVIKFLMPSSRLS--EIMDKNY---- 177 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~-~~~~ll~~il~~l~~~~~~~--~~~~~~~---- 177 (418)
.-..++|.|..|+|||||.+.+++... -+..+++- ++... .+.++.+..+..-+.....- .+.....
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~l--iGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLAL--IGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERA 234 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEE--EccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHH
Confidence 345789999999999999999998422 24556665 65543 44555544333211111000 0011111
Q ss_pred ------HHHHHHHHHHhccCcEEEEEecc
Q 041194 178 ------EMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 178 ------~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
-.+++++++ ++|.+|+++||+
T Consensus 235 ~a~~~a~tiAEyfrd--~G~~Vll~~Dsl 261 (439)
T PRK06936 235 KAGFVATSIAEYFRD--QGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHHHHH--cCCCEEEeccch
Confidence 113344443 589999999999
No 251
>PRK05922 type III secretion system ATPase; Validated
Probab=95.26 E-value=0.083 Score=53.48 Aligned_cols=89 Identities=10% Similarity=0.149 Sum_probs=47.8
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCC-CCCHHHHHHHHHHHhCCCCCccccccCC---HHH--
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSN-EYDADQILDIVIKFLMPSSRLSEIMDKN---YEM-- 179 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~-~~~~~~ll~~il~~l~~~~~~~~~~~~~---~~~-- 179 (418)
-..++|+|..|+|||||.+.+.+. .. -+....+- ++. .....+.+.+...........--....+ ...
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~--~~--~d~gvi~l--iGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKG--SK--STINVIAL--IGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhcc--CC--CCceEEEE--eCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 346899999999999999999873 21 12223322 222 2334455555544332221100001111 111
Q ss_pred ---HHHHHHHHh--ccCcEEEEEecc
Q 041194 180 ---KKIILHEYL--MTKRYLIVIDDF 200 (418)
Q Consensus 180 ---l~~~l~~~L--~~kr~LlVLDDv 200 (418)
..-.+.+++ +++.+|+++||+
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccch
Confidence 122344444 489999999999
No 252
>PRK13949 shikimate kinase; Provisional
Probab=95.25 E-value=0.016 Score=51.22 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=19.8
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-|.|+|++|+||||+++.+.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999998
No 253
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.24 E-value=0.017 Score=52.44 Aligned_cols=23 Identities=9% Similarity=0.219 Sum_probs=21.6
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+|+|+|++|+||||||+.+..
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~ 27 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLE 27 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999998
No 254
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.24 E-value=0.014 Score=49.40 Aligned_cols=43 Identities=19% Similarity=0.248 Sum_probs=30.3
Q ss_pred EEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHH
Q 041194 109 VAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDI 158 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~ 158 (418)
|.++|.+|+|||+||+.++. .....+ .-+. ++...+..++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~~~---~~i~--~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGRPV---IRIN--CSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTCEE---EEEE---TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhcce---EEEE--eccccccccceee
Confidence 67899999999999999998 442221 2345 6777777776543
No 255
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.23 E-value=0.11 Score=55.08 Aligned_cols=47 Identities=17% Similarity=0.131 Sum_probs=39.3
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|-+..++.|.+++..+. -...+.++|..|+||||+|+.+.+
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak 60 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAK 60 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 34588999999999999987663 345678999999999999999887
No 256
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.21 E-value=0.018 Score=50.90 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=22.1
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+++|+|..|+|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 467999999999999999999987
No 257
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.029 Score=54.55 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=40.8
Q ss_pred CCcccchhhHHHHHHHHhcC----C-------CCceEEEEECCCCCchHHHHHHHHhcCCCCCCc
Q 041194 83 RDTVGLDDRMEKLLDLLIEG----P-------PQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF 136 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~~----~-------~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F 136 (418)
.++=|-++.+++|.+.+.-. + +.++=|.++|++|.|||-||++|+| +....|
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF 213 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF 213 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE
Confidence 34557899999998886432 1 4677889999999999999999999 655554
No 258
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.21 E-value=0.015 Score=50.91 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=18.7
Q ss_pred EEEEECCCCCchHHHHHHHH
Q 041194 108 MVAILDSIGLDKTAFATEAY 127 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~ 127 (418)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 259
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.20 E-value=0.049 Score=57.90 Aligned_cols=76 Identities=11% Similarity=0.005 Sum_probs=52.4
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCC-cceeeeeecCCCCCCCHHHHHHHH
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHY-FDCHAWITEPYSNEYDADQILDIV 159 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~-F~~~~wv~~~vs~~~~~~~ll~~i 159 (418)
--.+++|.++.++.+...+.... -+.++|++|+||||+|+.+.+ .+... |...+++. ....+...+++.+
T Consensus 16 ~~~~viG~~~a~~~l~~a~~~~~----~~ll~G~pG~GKT~la~~la~--~l~~~~~~~~~~~~---n~~~~~~~~~~~v 86 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAKQKR----NVLLIGEPGVGKSMLAKAMAE--LLPDEELEDILVYP---NPEDPNMPRIVEV 86 (608)
T ss_pred hHhhccCHHHHHHHHHHHHHcCC----CEEEECCCCCCHHHHHHHHHH--HcCchhheeEEEEe---CCCCCchHHHHHH
Confidence 44678899988888887776552 455999999999999999998 55443 34344444 2223455567777
Q ss_pred HHHhCC
Q 041194 160 IKFLMP 165 (418)
Q Consensus 160 l~~l~~ 165 (418)
...++.
T Consensus 87 ~~~~g~ 92 (608)
T TIGR00764 87 PAGEGR 92 (608)
T ss_pred HHhhch
Confidence 766654
No 260
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.047 Score=58.73 Aligned_cols=103 Identities=19% Similarity=0.289 Sum_probs=64.5
Q ss_pred CCCCcccchhhHHHHHHHHhcC-------CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcc-eeeeeecCCCCCCCH
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEG-------PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFD-CHAWITEPYSNEYDA 152 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~-~~~wv~~~vs~~~~~ 152 (418)
-...++|-++.++.+.+.+... .....+...+|+.|||||-||+.+.. ..|+ ....+. +|+
T Consensus 489 L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~-----~Lfg~e~aliR------~DM 557 (786)
T COG0542 489 LKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE-----ALFGDEQALIR------IDM 557 (786)
T ss_pred HhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH-----HhcCCCcccee------ech
Confidence 3568899999999999988642 23456777899999999999999988 3342 123333 344
Q ss_pred HHHHH--HHHHHhCCCCCccccccCCHHHHHHHHHHHhccCcE-EEEEecc
Q 041194 153 DQILD--IVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRY-LIVIDDF 200 (418)
Q Consensus 153 ~~ll~--~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~-LlVLDDv 200 (418)
.+... .+-+-++.+..- .+-.. .-.|.+..+.+.| +|.||.+
T Consensus 558 SEy~EkHsVSrLIGaPPGY--VGyee----GG~LTEaVRr~PySViLlDEI 602 (786)
T COG0542 558 SEYMEKHSVSRLIGAPPGY--VGYEE----GGQLTEAVRRKPYSVILLDEI 602 (786)
T ss_pred HHHHHHHHHHHHhCCCCCC--ceecc----ccchhHhhhcCCCeEEEechh
Confidence 44332 223334443321 11111 2345566677877 8888988
No 261
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.20 E-value=0.013 Score=47.58 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=17.9
Q ss_pred EEEECCCCCchHHHHHHHHh
Q 041194 109 VAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~ 128 (418)
|-|+|.+|+|||+||+.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999876
No 262
>PRK14529 adenylate kinase; Provisional
Probab=95.19 E-value=0.075 Score=49.06 Aligned_cols=90 Identities=11% Similarity=0.033 Sum_probs=46.7
Q ss_pred EEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccccccCCHHHHHHHHHHHh
Q 041194 109 VAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYL 188 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L 188 (418)
|.|.|++|+||||+|+.+.....+ .+.+..-.+...+..........++++.+ .. ....+-....+.+.|
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~-~~is~gdllr~~i~~~t~lg~~i~~~i~~---G~------lvpdei~~~lv~~~l 72 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDL-AHIESGAIFREHIGGGTELGKKAKEYIDR---GD------LVPDDITIPMILETL 72 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC-CCcccchhhhhhccCCChHHHHHHHHHhc---cC------cchHHHHHHHHHHHH
Confidence 788999999999999999873222 12221111110022222222333333322 11 122334445566666
Q ss_pred ccC-cEEEEEeccCCCccccc
Q 041194 189 MTK-RYLIVIDDFEDGENIRL 208 (418)
Q Consensus 189 ~~k-r~LlVLDDvp~~~~Va~ 208 (418)
... .-=+|||+.|.+..-|.
T Consensus 73 ~~~~~~g~iLDGfPRt~~Qa~ 93 (223)
T PRK14529 73 KQDGKNGWLLDGFPRNKVQAE 93 (223)
T ss_pred hccCCCcEEEeCCCCCHHHHH
Confidence 431 34588999988764444
No 263
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.16 E-value=0.031 Score=55.24 Aligned_cols=47 Identities=17% Similarity=0.180 Sum_probs=39.3
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|.++.++.|.+++..+. -...+.++|++|+||||+|+.+..
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~ 58 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAK 58 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 44578999999999999997653 345778999999999999988876
No 264
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=95.16 E-value=0.062 Score=54.84 Aligned_cols=93 Identities=14% Similarity=0.163 Sum_probs=53.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcc--eeeeeecCCCCC-CCHHHHHHHHHHHhCCCCCcc--cc-ccCCHH-
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFD--CHAWITEPYSNE-YDADQILDIVIKFLMPSSRLS--EI-MDKNYE- 178 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~--~~~wv~~~vs~~-~~~~~ll~~il~~l~~~~~~~--~~-~~~~~~- 178 (418)
-.-++|.|-.|+|||||+..+.+.....+.+. ..+++- +++. -.+.++++.+...=......- .+ +.....
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~--iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R 218 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAA--MGITYEEANFFMKDFEETGALERAVVFLNLADDPAVER 218 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEE--ccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHH
Confidence 34678999999999999999998544332221 345555 6554 355566666654321111000 00 111111
Q ss_pred ----HHHHHHHHHhc---cCcEEEEEecc
Q 041194 179 ----MKKIILHEYLM---TKRYLIVIDDF 200 (418)
Q Consensus 179 ----~l~~~l~~~L~---~kr~LlVLDDv 200 (418)
...-.+.++++ ++++||++||+
T Consensus 219 ~~a~~~a~tiAEyfr~d~G~~VLli~Dsl 247 (458)
T TIGR01041 219 IVTPRMALTAAEYLAFEKDMHVLVILTDM 247 (458)
T ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEcCh
Confidence 12233566665 68999999999
No 265
>PRK13975 thymidylate kinase; Provisional
Probab=95.16 E-value=0.018 Score=51.77 Aligned_cols=22 Identities=18% Similarity=0.050 Sum_probs=21.0
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+|+|.|+.|+||||+|+.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~ 24 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAE 24 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999998
No 266
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.15 E-value=0.047 Score=55.39 Aligned_cols=92 Identities=11% Similarity=0.177 Sum_probs=55.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCC-CHHHHHHHHHHHhCCCCCcc--cc-ccCCHH---
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEY-DADQILDIVIKFLMPSSRLS--EI-MDKNYE--- 178 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~-~~~~ll~~il~~l~~~~~~~--~~-~~~~~~--- 178 (418)
-.-++|.|.+|+|||+|+..+.++.. +.+-+..+|+- ++... ...++.+++...=......- .. +.....
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~--iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCG--IGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEE--eccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 34689999999999999999877522 22336777887 76654 44566666554311111000 00 111111
Q ss_pred --HHHHHHHHHhc---cCcEEEEEecc
Q 041194 179 --MKKIILHEYLM---TKRYLIVIDDF 200 (418)
Q Consensus 179 --~l~~~l~~~L~---~kr~LlVLDDv 200 (418)
...-.+.++++ ++.+||++||+
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecCh
Confidence 12334666664 58999999999
No 267
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.14 E-value=0.036 Score=61.24 Aligned_cols=47 Identities=15% Similarity=0.240 Sum_probs=38.5
Q ss_pred CCCcccchhhHHHHHHHHhcC-------CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIEG-------PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...++|-++.++.+.+.+... .....++.++|+.|+|||.||+.+..
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~ 618 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE 618 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999988531 22355789999999999999998877
No 268
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.14 E-value=0.045 Score=53.19 Aligned_cols=88 Identities=18% Similarity=0.144 Sum_probs=54.2
Q ss_pred CCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCc-cccccCCHHHHHH
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRL-SEIMDKNYEMKKI 182 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~-~~~~~~~~~~l~~ 182 (418)
+.-+++-|+|..|+||||||..+.. ..+..-...+|++ ....+++. .++.++.+.+. --..+.+.++...
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID--~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~ 121 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFID--AEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALW 121 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEE--SSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEec--Ccccchhh-----HHHhcCccccceEEecCCcHHHHHH
Confidence 4567999999999999999999887 4433445578999 76666664 34455543220 0022345566666
Q ss_pred HHHHHhcc-CcEEEEEecc
Q 041194 183 ILHEYLMT-KRYLIVIDDF 200 (418)
Q Consensus 183 ~l~~~L~~-kr~LlVLDDv 200 (418)
.+...++. ..-++|+|-|
T Consensus 122 ~~e~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 122 IAEQLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHHHHTTSESEEEEE-C
T ss_pred HHHHHhhcccccEEEEecC
Confidence 66666654 4569999998
No 269
>PRK14526 adenylate kinase; Provisional
Probab=95.12 E-value=0.039 Score=50.56 Aligned_cols=20 Identities=25% Similarity=0.228 Sum_probs=18.6
Q ss_pred EEEECCCCCchHHHHHHHHh
Q 041194 109 VAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~ 128 (418)
|.|+|++|+||||+|+.+..
T Consensus 3 i~l~G~pGsGKsT~a~~La~ 22 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSN 22 (211)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999886
No 270
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.12 E-value=0.016 Score=50.15 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=20.7
Q ss_pred EEEEECCCCCchHHHHHHHHhc
Q 041194 108 MVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d 129 (418)
+|.|.|.+|+||||+|+.+.++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~ 23 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH 23 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH
Confidence 7899999999999999999994
No 271
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.12 E-value=0.028 Score=53.45 Aligned_cols=68 Identities=15% Similarity=0.088 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHH
Q 041194 92 MEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIK 161 (418)
Q Consensus 92 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~ 161 (418)
-.+|+..+.....+..+|+|.|.||+||+||.-.+-..-.-+.+==.++=|+ -|.+++--.|+-+=++
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVD--PSSp~TGGsiLGDRiR 104 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVD--PSSPFTGGSILGDRIR 104 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEEC--CCCCCCCccccccHhh
Confidence 4567777777767788999999999999999988876322222222344556 6778877666655444
No 272
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.11 E-value=0.058 Score=55.71 Aligned_cols=47 Identities=23% Similarity=0.204 Sum_probs=34.0
Q ss_pred CCCcccchhhHHHHHHHHhc--------CCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIE--------GPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~--------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.++.|.+..++.+.+.... +-...+-|.++|++|+|||.+|+.+.+
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~ 281 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAN 281 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 34677877766666553211 113466789999999999999999999
No 273
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.11 E-value=0.058 Score=54.96 Aligned_cols=92 Identities=13% Similarity=0.210 Sum_probs=52.9
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCC-CCHHHHHHHHHHHhCCCCCcc--ccccC-CHH---
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNE-YDADQILDIVIKFLMPSSRLS--EIMDK-NYE--- 178 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~-~~~~~ll~~il~~l~~~~~~~--~~~~~-~~~--- 178 (418)
-.-++|.|.+|+|||||+..+......... +..+++- ++.. ..+.+++++++..=......- .+... ...
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~-~v~V~~l--iGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHG-GYSVFAG--VGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCC-CEEEEEE--eccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 346899999999999999988663221111 3455666 6554 355667777665321111000 00111 111
Q ss_pred --HHHHHHHHHh---ccCcEEEEEecc
Q 041194 179 --MKKIILHEYL---MTKRYLIVIDDF 200 (418)
Q Consensus 179 --~l~~~l~~~L---~~kr~LlVLDDv 200 (418)
...-.+.+++ ++|.+||++||+
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecch
Confidence 1223456666 679999999999
No 274
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.10 E-value=0.046 Score=58.18 Aligned_cols=77 Identities=12% Similarity=0.030 Sum_probs=57.0
Q ss_pred CCCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCC-CCcceeeeeecCCCCCCCHHHHHHH
Q 041194 80 SKSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVK-HYFDCHAWITEPYSNEYDADQILDI 158 (418)
Q Consensus 80 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~-~~F~~~~wv~~~vs~~~~~~~ll~~ 158 (418)
..-.+++|.++.++.|...+... +.+.++|.+|+||||+|+.+.+ .+- .+|+..+|.. - ...+...+++.
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~--~l~~~~~~~~~~~~--n-p~~~~~~~~~~ 98 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAE--LLPKEELQDILVYP--N-PEDPNNPKIRT 98 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHH--HcChHhHHHheEee--C-CCcchHHHHHH
Confidence 34457889988888888877655 3688999999999999999988 343 2457778877 3 34466677777
Q ss_pred HHHHhCC
Q 041194 159 VIKFLMP 165 (418)
Q Consensus 159 il~~l~~ 165 (418)
+..+++.
T Consensus 99 v~~~~G~ 105 (637)
T PRK13765 99 VPAGKGK 105 (637)
T ss_pred HHHhcCH
Confidence 7766654
No 275
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.09 E-value=0.092 Score=53.91 Aligned_cols=91 Identities=10% Similarity=0.044 Sum_probs=51.1
Q ss_pred ceEEEEECCCCCchHHHH-HHHHhcCCC-----CCCcceeeeeecCCCCCCCHHHHHHHHHHHhCC-CCCcc--c-cccC
Q 041194 106 RSMVAILDSIGLDKTAFA-TEAYNSSYV-----KHYFDCHAWITEPYSNEYDADQILDIVIKFLMP-SSRLS--E-IMDK 175 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA-~~v~~d~~~-----~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~-~~~~~--~-~~~~ 175 (418)
-.-++|.|-.|+|||+|| -.+.|...+ .++-+..+++- +++..+.-.-+.+.+++-+. ....- . .+..
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~Vyva--IGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVS--IGQRCSNVARIHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEE--eccchHHHHHHHHHHHhcCCccceEEEEECCCCC
Confidence 345789999999999997 556664322 12334567777 88775443334444444431 11000 0 0111
Q ss_pred ---------CHHHHHHHHHHHhccCcEEEEEecc
Q 041194 176 ---------NYEMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 176 ---------~~~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
..-.+.+.+++ +++.+|||+||+
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd--~GkdVLiv~DDL 298 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMN--RGRHCLCVYDDL 298 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHH--cCCCEEEEEcCc
Confidence 11123344443 479999999999
No 276
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.08 E-value=0.066 Score=54.06 Aligned_cols=90 Identities=10% Similarity=0.064 Sum_probs=48.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCcc--c-cccCCHHH---
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLS--E-IMDKNYEM--- 179 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~--~-~~~~~~~~--- 179 (418)
-..++|.|..|+|||||++.+... ... ....+... --+.-.+.++.++.+..-+.....- . .+......
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~--~~~-~~gvi~~i--Ger~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARN--TDA-DVVVIALV--GERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCC--CCC-CEEEEEEE--eeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 457899999999999999988873 222 22222222 2233345555555444322111100 0 01111111
Q ss_pred --HHHHHHHHh--ccCcEEEEEecc
Q 041194 180 --KKIILHEYL--MTKRYLIVIDDF 200 (418)
Q Consensus 180 --l~~~l~~~L--~~kr~LlVLDDv 200 (418)
..-.+.+++ +++.+||++||+
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 122344444 579999999999
No 277
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.08 E-value=0.018 Score=49.47 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=18.9
Q ss_pred EEEECCCCCchHHHHHHHHh
Q 041194 109 VAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~ 128 (418)
|.|+|++|+||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999987
No 278
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.08 E-value=0.019 Score=49.07 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=25.9
Q ss_pred eEEEEECCCCCchHHHHHHHHhcCCCC-CCcceeeeee
Q 041194 107 SMVAILDSIGLDKTAFATEAYNSSYVK-HYFDCHAWIT 143 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d~~~~-~~F~~~~wv~ 143 (418)
++|.|+|..|+|||||++.+.+ ... ..+...+..+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~--~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN--ELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHhHcCCceEEEEE
Confidence 4899999999999999999998 443 4455555555
No 279
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.07 E-value=0.084 Score=51.82 Aligned_cols=20 Identities=10% Similarity=0.044 Sum_probs=18.4
Q ss_pred EEEECCCCCchHHHHHHHHh
Q 041194 109 VAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~ 128 (418)
+.+.|++|+||||+++.+.+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~ 21 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSA 21 (340)
T ss_pred eEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999987
No 280
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.06 E-value=0.092 Score=53.38 Aligned_cols=89 Identities=10% Similarity=0.079 Sum_probs=48.6
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCC-CCHHHHHHHHHHHhCCCCCccc---cccCCHHH--
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNE-YDADQILDIVIKFLMPSSRLSE---IMDKNYEM-- 179 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~-~~~~~ll~~il~~l~~~~~~~~---~~~~~~~~-- 179 (418)
-..++|+|..|+|||||++.+..... .+..+... ++.. .+..++...+...-......-- .+......
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~~----~dv~V~g~--Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFTE----ADIIVVGL--IGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEE--eCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHH
Confidence 45789999999999999999987321 23333333 3333 3455555555443222111000 01111111
Q ss_pred ---HHHHHHHHh--ccCcEEEEEecc
Q 041194 180 ---KKIILHEYL--MTKRYLIVIDDF 200 (418)
Q Consensus 180 ---l~~~l~~~L--~~kr~LlVLDDv 200 (418)
..-.+.+++ +++.+||++||+
T Consensus 242 a~~~a~aiAEyfrd~G~~VLl~~Dsl 267 (451)
T PRK05688 242 AAMYCTRIAEYFRDKGKNVLLLMDSL 267 (451)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecch
Confidence 112244444 589999999999
No 281
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.06 E-value=0.019 Score=51.43 Aligned_cols=23 Identities=9% Similarity=0.212 Sum_probs=20.8
Q ss_pred eEEEEECCCCCchHHHHHHHHhc
Q 041194 107 SMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999873
No 282
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.06 E-value=0.12 Score=52.16 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.1
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+++++|..|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999987765
No 283
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.05 E-value=0.037 Score=49.50 Aligned_cols=22 Identities=14% Similarity=0.059 Sum_probs=20.4
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+|+|.|+.|+||||+++.+.+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~ 22 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAE 22 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999988
No 284
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.04 E-value=0.041 Score=46.94 Aligned_cols=69 Identities=10% Similarity=0.041 Sum_probs=41.7
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccccccCCHHHHHHHHH
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILH 185 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 185 (418)
..-|.|.|-+|+||||||..+.. ... .-|++ +|.-....++....-+... ....+++.+...|.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae--~~~-----~~~i~--isd~vkEn~l~~gyDE~y~-------c~i~DEdkv~D~Le 70 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAE--KTG-----LEYIE--ISDLVKENNLYEGYDEEYK-------CHILDEDKVLDELE 70 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHH--HhC-----CceEe--hhhHHhhhcchhccccccc-------CccccHHHHHHHHH
Confidence 34578999999999999999997 322 23666 6544333333222111111 23456777777777
Q ss_pred HHhcc
Q 041194 186 EYLMT 190 (418)
Q Consensus 186 ~~L~~ 190 (418)
.++.+
T Consensus 71 ~~m~~ 75 (176)
T KOG3347|consen 71 PLMIE 75 (176)
T ss_pred HHHhc
Confidence 76654
No 285
>PRK13948 shikimate kinase; Provisional
Probab=95.04 E-value=0.023 Score=50.81 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=22.1
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
....|.++|+.|+||||+++.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999998
No 286
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.03 E-value=0.022 Score=46.42 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=20.0
Q ss_pred EEEECCCCCchHHHHHHHHhcC
Q 041194 109 VAILDSIGLDKTAFATEAYNSS 130 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~d~ 130 (418)
|.|+|..|+|||||.+.+.+.+
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999754
No 287
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.02 E-value=0.085 Score=49.81 Aligned_cols=81 Identities=12% Similarity=0.055 Sum_probs=43.6
Q ss_pred EEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCC--CCCHHHHHHHHHHHhCC--CCCccccccCCHHHHHHH
Q 041194 108 MVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSN--EYDADQILDIVIKFLMP--SSRLSEIMDKNYEMKKII 183 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~--~~~~~~ll~~il~~l~~--~~~~~~~~~~~~~~l~~~ 183 (418)
+|+|.|.+|+||||+|+.+.+ .+...=...+.++ ... ..+-...-+.+...... +-..-+.+..+.+.+.+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~--~l~~~g~~v~vI~--~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~ 76 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEH--IFAREGIHPAVVE--GDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEEL 76 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHH--HHHhcCCceEEEe--ccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHH
Confidence 589999999999999998876 2221101123343 211 12222222222222211 111100255678888888
Q ss_pred HHHHhccCc
Q 041194 184 LHEYLMTKR 192 (418)
Q Consensus 184 l~~~L~~kr 192 (418)
++++.+++.
T Consensus 77 l~~L~~g~~ 85 (277)
T cd02029 77 FRTYGETGR 85 (277)
T ss_pred HHHHHcCCC
Confidence 888877654
No 288
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.02 E-value=0.029 Score=52.45 Aligned_cols=65 Identities=12% Similarity=0.108 Sum_probs=37.8
Q ss_pred hHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHH
Q 041194 91 RMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILD 157 (418)
Q Consensus 91 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~ 157 (418)
...++++.|.....+..+|+|.|.+|+||+||.-.+...-.-+++==.++-|+ -|.+++--.++-
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVD--PSSp~tGGAlLG 78 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVD--PSSPFTGGALLG 78 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE---GGGGCC---SS-
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEEC--CCCCCCCCcccc
Confidence 55677777776555688999999999999999988876311111112234455 566666555443
No 289
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.00 E-value=0.14 Score=50.02 Aligned_cols=90 Identities=10% Similarity=0.125 Sum_probs=48.9
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCC-CCCCHHHHHHHHHHHhCCCCCcc--c-cccCCHH---
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYS-NEYDADQILDIVIKFLMPSSRLS--E-IMDKNYE--- 178 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs-~~~~~~~ll~~il~~l~~~~~~~--~-~~~~~~~--- 178 (418)
-..++|+|..|+|||||.+.+.+. ... +..+..- ++ +.-+..++....+..-......- . .+.....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~--~~~--~~~vi~~--iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARG--TTA--DVNVIAL--IGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCC--CCC--CEEEEEE--EecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 457899999999999999999883 222 2223333 33 33455566655554322111000 0 0111111
Q ss_pred --HHHHHHHHHh--ccCcEEEEEeccC
Q 041194 179 --MKKIILHEYL--MTKRYLIVIDDFE 201 (418)
Q Consensus 179 --~l~~~l~~~L--~~kr~LlVLDDvp 201 (418)
...-.+.+++ ++|.+||++||+.
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dslt 169 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccch
Confidence 1122233333 5899999999983
No 290
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.00 E-value=0.095 Score=57.93 Aligned_cols=47 Identities=11% Similarity=0.169 Sum_probs=37.7
Q ss_pred CCCcccchhhHHHHHHHHhcC-------CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIEG-------PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...++|-++.++.|.+.+... +.....+.++|+.|+|||+||+.+.+
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~ 561 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS 561 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 467899999999998887632 12234677899999999999999987
No 291
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=94.99 E-value=0.093 Score=53.39 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCchHHHHHHHHhc
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.-..++|+|..|+|||||++.+.+.
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~ 181 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARN 181 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3568999999999999999988873
No 292
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.99 E-value=0.08 Score=53.73 Aligned_cols=93 Identities=14% Similarity=0.152 Sum_probs=56.7
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCC--Ccc---------eeeeeecCCCCCCCHHHHHHHHHHHhC-CCCCccc--
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKH--YFD---------CHAWITEPYSNEYDADQILDIVIKFLM-PSSRLSE-- 171 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~--~F~---------~~~wv~~~vs~~~~~~~ll~~il~~l~-~~~~~~~-- 171 (418)
-.-++|.|-+|+|||||+..+.+..+... ..| ..+++- +++.....+.+.+.+..-+ .....--
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~--IGerre~~efi~~~l~~~g~l~rtvvv~a 218 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAA--MGVNMETARFFKQDFEENGSMERVCLFLN 218 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEE--eeeehHHHHHHHHHHHhcCCcceEEEEEE
Confidence 44678999999999999999987543100 012 456666 8887777776776666654 1111000
Q ss_pred -cccCCHHH-----HHHHHHHHhc---cCcEEEEEecc
Q 041194 172 -IMDKNYEM-----KKIILHEYLM---TKRYLIVIDDF 200 (418)
Q Consensus 172 -~~~~~~~~-----l~~~l~~~L~---~kr~LlVLDDv 200 (418)
.+....+. ..-.+.++++ +|.+|+++||+
T Consensus 219 tsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~Dsl 256 (466)
T TIGR01040 219 LANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDM 256 (466)
T ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccCh
Confidence 01111111 2233666665 59999999999
No 293
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.97 E-value=0.023 Score=50.26 Aligned_cols=23 Identities=9% Similarity=0.289 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+.|.|+|+.|+||||+|+.+.+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHH
Confidence 34699999999999999999998
No 294
>PRK14530 adenylate kinase; Provisional
Probab=94.94 E-value=0.021 Score=52.44 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=20.1
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+.|.|+|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 295
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.93 E-value=0.03 Score=53.00 Aligned_cols=52 Identities=19% Similarity=0.203 Sum_probs=39.5
Q ss_pred CCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHH
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIK 161 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~ 161 (418)
+.-+++.|+|.+|+|||++|.++.. +........+||+ ... +..++.+...+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs--~~e--~~~~l~~~~~~ 72 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVS--TEE--SPEELLENARS 72 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEE--ecC--CHHHHHHHHHH
Confidence 5678999999999999999999988 5656688889988 543 34455554433
No 296
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.92 E-value=0.083 Score=53.50 Aligned_cols=89 Identities=13% Similarity=0.182 Sum_probs=48.8
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCC-CCCHHHHHHHHHHHhCCCCCccc--c-ccCCHHH--
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSN-EYDADQILDIVIKFLMPSSRLSE--I-MDKNYEM-- 179 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~-~~~~~~ll~~il~~l~~~~~~~~--~-~~~~~~~-- 179 (418)
-..++|+|..|+|||||++.+.+. . +.+..+++. ++. ...+.+++.+....=.......- . +....+.
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~--~--~~d~~vi~~--iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~ 228 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNA--P--DADSNVLVL--IGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR 228 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCC--C--CCCEEEEEE--ECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHH
Confidence 458899999999999999999873 2 233344544 443 34444555554321100000000 0 1111111
Q ss_pred ---HHHHHHHHh--ccCcEEEEEecc
Q 041194 180 ---KKIILHEYL--MTKRYLIVIDDF 200 (418)
Q Consensus 180 ---l~~~l~~~L--~~kr~LlVLDDv 200 (418)
..-.+.+++ ++|++||++||+
T Consensus 229 a~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 229 ALFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 122244444 479999999999
No 297
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.92 E-value=0.04 Score=51.33 Aligned_cols=36 Identities=6% Similarity=0.104 Sum_probs=26.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
...+.|+|+.|+|||+|++.+++ .....-....+++
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~--~~~~~~~~v~y~~ 80 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACA--ELSQRGRAVGYVP 80 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEE
Confidence 45789999999999999999998 3332222345666
No 298
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.92 E-value=0.13 Score=54.78 Aligned_cols=48 Identities=21% Similarity=0.144 Sum_probs=39.6
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.-.+++|.+..++.|..++..+. -..-+.++|..|+||||+|+.+.+.
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~ 61 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKS 61 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHH
Confidence 34578999999999999998753 2346789999999999999999883
No 299
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.91 E-value=0.017 Score=50.28 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=18.6
Q ss_pred EEEECCCCCchHHHHHHHHh
Q 041194 109 VAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~ 128 (418)
|.|+|++|+||||+|+.+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998
No 300
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.90 E-value=0.066 Score=52.53 Aligned_cols=66 Identities=21% Similarity=0.232 Sum_probs=47.7
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHH
Q 041194 82 SRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDI 158 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~ 158 (418)
...++|.++....+...+..+. -+-+.|.+|+|||+||+.+.. .+...| .++. ........++.-.
T Consensus 23 ~~~~~g~~~~~~~~l~a~~~~~----~vll~G~PG~gKT~la~~lA~--~l~~~~---~~i~--~t~~l~p~d~~G~ 88 (329)
T COG0714 23 EKVVVGDEEVIELALLALLAGG----HVLLEGPPGVGKTLLARALAR--ALGLPF---VRIQ--CTPDLLPSDLLGT 88 (329)
T ss_pred CCeeeccHHHHHHHHHHHHcCC----CEEEECCCCccHHHHHHHHHH--HhCCCe---EEEe--cCCCCCHHHhcCc
Confidence 3448998888888887777664 578999999999999999999 554333 3455 5555566555433
No 301
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.89 E-value=0.043 Score=56.91 Aligned_cols=103 Identities=13% Similarity=0.136 Sum_probs=51.7
Q ss_pred HHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCC-CcceeeeeecCCCCCC-CHHHHHHHHHHHhCC-CCCcc
Q 041194 94 KLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKH-YFDCHAWITEPYSNEY-DADQILDIVIKFLMP-SSRLS 170 (418)
Q Consensus 94 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~-~F~~~~wv~~~vs~~~-~~~~ll~~il~~l~~-~~~~~ 170 (418)
+++++|..-. .-.-..|+|.+|+|||||++.+.+ .+.. +=++.++|.. |...+ .+.++.+.+--.+-. ....+
T Consensus 405 RvIDll~PIG-kGQR~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivvL-IgERpeEVtdm~rsVkgeVVasT~D~p 480 (672)
T PRK12678 405 RVIDLIMPIG-KGQRGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVVL-VDERPEEVTDMQRSVKGEVIASTFDRP 480 (672)
T ss_pred eeeeeecccc-cCCEeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEEE-EeCchhhHHHHHHhccceEEEECCCCC
Confidence 4455554422 234578999999999999999998 4432 2234444331 44333 333333322000000 00000
Q ss_pred ccccCCHHHHHHHHHHHh--ccCcEEEEEecc
Q 041194 171 EIMDKNYEMKKIILHEYL--MTKRYLIVIDDF 200 (418)
Q Consensus 171 ~~~~~~~~~l~~~l~~~L--~~kr~LlVLDDv 200 (418)
.........+.-.+.++| .++.+||++|++
T Consensus 481 ~~~~~~~a~~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 481 PSDHTTVAELAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 000111122233344454 689999999998
No 302
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.067 Score=55.58 Aligned_cols=92 Identities=15% Similarity=0.119 Sum_probs=56.6
Q ss_pred CCcccchhhHHHHHHHHhc---C--------CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCC
Q 041194 83 RDTVGLDDRMEKLLDLLIE---G--------PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYD 151 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~---~--------~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~ 151 (418)
.++.|.+..++.+.+.+.. . -...+.+-++|++|.|||.||+.+++ .....|-...+-.
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v~~~~-------- 311 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISVKGSE-------- 311 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEeeCHH--------
Confidence 4555666666655554422 1 13566899999999999999999999 5555553221111
Q ss_pred HHHHHHHHHHHhCCCCCccccccCCHHHHHHHHHHHhccCcEEEEEecc
Q 041194 152 ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 152 ~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
+ +.. .-...+..+...+....+.....|.+|.+
T Consensus 312 ---l----~sk---------~vGesek~ir~~F~~A~~~~p~iiFiDEi 344 (494)
T COG0464 312 ---L----LSK---------WVGESEKNIRELFEKARKLAPSIIFIDEI 344 (494)
T ss_pred ---H----hcc---------ccchHHHHHHHHHHHHHcCCCcEEEEEch
Confidence 1 110 01223444455555666678899999988
No 303
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.87 E-value=0.094 Score=48.40 Aligned_cols=57 Identities=18% Similarity=0.081 Sum_probs=42.2
Q ss_pred CCCCCcccchhhHHHHHHHHhc--CCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcce
Q 041194 80 SKSRDTVGLDDRMEKLLDLLIE--GPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDC 138 (418)
Q Consensus 80 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~ 138 (418)
.+-..++|.|..++.|++-... .+-...-|.+||--|+||++|++++.+ ++....-.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr 115 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR 115 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe
Confidence 4456789999999998876542 222345678999999999999999999 55554433
No 304
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.87 E-value=0.029 Score=50.29 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=22.2
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..++|.|+|++|+|||||++.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 367899999999999999999988
No 305
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.87 E-value=0.13 Score=54.28 Aligned_cols=46 Identities=15% Similarity=0.053 Sum_probs=37.4
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk 60 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAK 60 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 4577898888888888886552 245778899999999999999988
No 306
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.85 E-value=0.026 Score=51.08 Aligned_cols=23 Identities=17% Similarity=0.085 Sum_probs=21.7
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|.|.|.+|+||||+|+.+..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~ 25 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIAR 25 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999998
No 307
>PRK13946 shikimate kinase; Provisional
Probab=94.85 E-value=0.025 Score=50.53 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+.|.++|++|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999998
No 308
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.84 E-value=0.1 Score=53.45 Aligned_cols=40 Identities=8% Similarity=0.094 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHh-----cCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 89 DDRMEKLLDLLI-----EGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 89 ~~~~~~l~~~L~-----~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..-++++.+||. ...-..+|..|.|++|+||||..+.+..
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLsk 132 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSK 132 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHH
Confidence 345677888888 3344567999999999999999998887
No 309
>COG3899 Predicted ATPase [General function prediction only]
Probab=94.84 E-value=0.036 Score=61.23 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=39.6
Q ss_pred CcccchhhHHHHHHHHhcC-CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 84 DTVGLDDRMEKLLDLLIEG-PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 84 ~~vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.++||+.+.+.|.+.+..- ...-.++.+.|..|+|||+|+++|..
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~ 46 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK 46 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH
Confidence 4789999999999998763 34566999999999999999999998
No 310
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.84 E-value=0.12 Score=50.51 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=22.0
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+++++|++|+||||++..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999998877
No 311
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=94.83 E-value=0.12 Score=46.71 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=22.7
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcC
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSS 130 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~ 130 (418)
....|+|+|.+|+|||||.+.+.+..
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcch
Confidence 35789999999999999999998853
No 312
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.83 E-value=0.039 Score=53.90 Aligned_cols=53 Identities=15% Similarity=0.368 Sum_probs=44.6
Q ss_pred CCCCcccchhhHHHHHHHHhcC----CCCceEEEEECCCCCchHHHHHHHHhcCCCCCC
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEG----PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHY 135 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~ 135 (418)
...+++|.++.+++|++.+... +..-+|+-++|+.|.||||||..+-+ -++..
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~--~le~y 115 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR--GLEEY 115 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH--HhheE
Confidence 3468999999999999998753 56788999999999999999999988 44433
No 313
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.83 E-value=0.2 Score=52.88 Aligned_cols=47 Identities=19% Similarity=0.152 Sum_probs=39.5
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+..
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAk 60 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAK 60 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 44688999999999999998764 345677899999999999999876
No 314
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.80 E-value=0.19 Score=51.38 Aligned_cols=98 Identities=22% Similarity=0.150 Sum_probs=55.3
Q ss_pred HHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCC-ccc
Q 041194 93 EKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSR-LSE 171 (418)
Q Consensus 93 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~-~~~ 171 (418)
..|-+.|..+=..-.++.|.|.+|+|||||+.++... ....=...+|++ ... +..++... ++.++.... ..-
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs--~Ee--s~~qi~~r-a~rlg~~~~~l~~ 139 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVS--GEE--SASQIKLR-AERLGLPSDNLYL 139 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE--ccc--cHHHHHHH-HHHcCCChhcEEE
Confidence 3444445444244669999999999999999999873 222112457777 433 33344332 445543221 000
Q ss_pred cccCCHHHHHHHHHHHhccCcEEEEEecc
Q 041194 172 IMDKNYEMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 172 ~~~~~~~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
....+.+.+.+.+++ .+.-+||+|.+
T Consensus 140 ~~e~~l~~i~~~i~~---~~~~lVVIDSI 165 (446)
T PRK11823 140 LAETNLEAILATIEE---EKPDLVVIDSI 165 (446)
T ss_pred eCCCCHHHHHHHHHh---hCCCEEEEech
Confidence 122345555554433 35668999987
No 315
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.78 E-value=0.089 Score=53.13 Aligned_cols=90 Identities=12% Similarity=0.145 Sum_probs=47.7
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCC-CCHHHHHHHHHHHhCCCCCcc--c-cccCCHH--
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNE-YDADQILDIVIKFLMPSSRLS--E-IMDKNYE-- 178 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~-~~~~~ll~~il~~l~~~~~~~--~-~~~~~~~-- 178 (418)
.-..++|+|..|+|||||++.+.+. ... +..+..- ++.. -...++..+.+.+-+.....- . .+.....
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~--~~~--~~gvi~~--~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~ 209 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARN--AKA--DINVIAL--IGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRL 209 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC--CCC--CeEEEEE--EccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHH
Confidence 3568999999999999999988873 222 2222222 3333 244455554443311110000 0 0111111
Q ss_pred ---HHHHHHHHHh--ccCcEEEEEecc
Q 041194 179 ---MKKIILHEYL--MTKRYLIVIDDF 200 (418)
Q Consensus 179 ---~l~~~l~~~L--~~kr~LlVLDDv 200 (418)
...-.+.+++ ++|.+||++||+
T Consensus 210 ~~~~~a~tiAEyfr~~G~~Vll~~Dsl 236 (413)
T TIGR03497 210 KAAFTATAIAEYFRDQGKDVLLMMDSV 236 (413)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcCc
Confidence 1122344444 479999999998
No 316
>PRK04182 cytidylate kinase; Provisional
Probab=94.77 E-value=0.028 Score=49.56 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=20.2
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~i~G~~GsGKstia~~la~ 22 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999998
No 317
>PRK04328 hypothetical protein; Provisional
Probab=94.77 E-value=0.13 Score=48.26 Aligned_cols=48 Identities=17% Similarity=0.303 Sum_probs=32.1
Q ss_pred HHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCC
Q 041194 97 DLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSN 148 (418)
Q Consensus 97 ~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~ 148 (418)
++|..+=+.-.++.|.|.+|+|||+||.++... .++. =...+|++ ...
T Consensus 14 ~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~-~~~~-ge~~lyis--~ee 61 (249)
T PRK04328 14 EILYGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GLQM-GEPGVYVA--LEE 61 (249)
T ss_pred HHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHH-HHhc-CCcEEEEE--eeC
Confidence 334333245789999999999999999987652 2222 24467877 544
No 318
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=94.76 E-value=0.017 Score=48.93 Aligned_cols=44 Identities=25% Similarity=0.168 Sum_probs=33.0
Q ss_pred ccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 86 VGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 86 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
||....++++.+.+..-......|.|+|..|+||+++|+.+++.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 57777778888877653334567899999999999999999984
No 319
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.76 E-value=0.022 Score=49.08 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=19.5
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
||.|+|.+|+||||||+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 320
>PRK14527 adenylate kinase; Provisional
Probab=94.75 E-value=0.028 Score=50.50 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+|.|+|.+|+||||+|+.+.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 321
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.75 E-value=0.049 Score=53.31 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 92 MEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 92 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...|.+.+.....+..+|+|.|.+|+|||||+..+..
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4556666654445678999999999999999998766
No 322
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.75 E-value=0.11 Score=54.68 Aligned_cols=50 Identities=18% Similarity=0.142 Sum_probs=41.4
Q ss_pred CCCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 80 SKSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 80 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.....++|....+.++.+.+..-......|.|+|..|+|||++|+.+++.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 35568999999999999988764334556789999999999999999984
No 323
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.73 E-value=0.2 Score=52.72 Aligned_cols=47 Identities=17% Similarity=0.055 Sum_probs=40.0
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|-+..++.|..++..+. -...+.++|+.|+||||+|+.+.+
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk 60 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFAR 60 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999998653 345788999999999999999988
No 324
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.73 E-value=0.14 Score=55.51 Aligned_cols=99 Identities=19% Similarity=0.075 Sum_probs=61.8
Q ss_pred HHHHHHHh-cCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCc-c
Q 041194 93 EKLLDLLI-EGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRL-S 170 (418)
Q Consensus 93 ~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~-~ 170 (418)
..|-.+|- .+=+.-+++-|+|.+|+||||||.++... ....=...+|++ ....++. ..+++++.+... .
T Consensus 46 ~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId--~E~t~~~-----~~A~~lGvDl~~ll 116 (790)
T PRK09519 46 IALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFID--AEHALDP-----DYAKKLGVDTDSLL 116 (790)
T ss_pred HHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEC--CccchhH-----HHHHHcCCChhHeE
Confidence 34444454 23355789999999999999999776552 212224468998 7666664 256666653221 0
Q ss_pred ccccCCHHHHHHHHHHHhcc-CcEEEEEecc
Q 041194 171 EIMDKNYEMKKIILHEYLMT-KRYLIVIDDF 200 (418)
Q Consensus 171 ~~~~~~~~~l~~~l~~~L~~-kr~LlVLDDv 200 (418)
-....+.++....+...++. +--|||+|-+
T Consensus 117 v~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI 147 (790)
T PRK09519 117 VSQPDTGEQALEIADMLIRSGALDIVVIDSV 147 (790)
T ss_pred EecCCCHHHHHHHHHHHhhcCCCeEEEEcch
Confidence 12233456666666666644 5668999998
No 325
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.73 E-value=0.022 Score=53.37 Aligned_cols=26 Identities=15% Similarity=0.288 Sum_probs=23.0
Q ss_pred CCceEEEEECCCCCchHHHHHHHHhc
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.+...|.++||+|+||||..|.++.+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHH
Confidence 45778889999999999999999984
No 326
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.72 E-value=0.097 Score=52.81 Aligned_cols=89 Identities=10% Similarity=0.116 Sum_probs=47.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCC-CCHHHHHHHHHHHhCCCCCcc--cc-ccCCHHH--
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNE-YDADQILDIVIKFLMPSSRLS--EI-MDKNYEM-- 179 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~-~~~~~ll~~il~~l~~~~~~~--~~-~~~~~~~-- 179 (418)
-..++|+|..|+|||||++.+.+. ... +..+... ++.. -...++...+...=......- .. +......
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~--~~~--~~~vi~~--iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~ 210 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARY--TEA--DVVVVGL--IGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLR 210 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC--CCC--CEEEEEE--EecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHH
Confidence 457899999999999999988873 221 2333333 4443 334445444433311110000 00 1111111
Q ss_pred ---HHHHHHHHh--ccCcEEEEEecc
Q 041194 180 ---KKIILHEYL--MTKRYLIVIDDF 200 (418)
Q Consensus 180 ---l~~~l~~~L--~~kr~LlVLDDv 200 (418)
..-.+.+++ +++.+||++||+
T Consensus 211 a~~~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 211 AAFYATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeCh
Confidence 112234444 589999999998
No 327
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=94.70 E-value=0.11 Score=53.21 Aligned_cols=89 Identities=16% Similarity=0.054 Sum_probs=50.8
Q ss_pred ceEEEEECCCCCchHHHH-HHHHhcCCCCCCcce-eeeeecCCCCCC-CHHHHHHHHHHHhCCCCCccc--c-ccCCHHH
Q 041194 106 RSMVAILDSIGLDKTAFA-TEAYNSSYVKHYFDC-HAWITEPYSNEY-DADQILDIVIKFLMPSSRLSE--I-MDKNYEM 179 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA-~~v~~d~~~~~~F~~-~~wv~~~vs~~~-~~~~ll~~il~~l~~~~~~~~--~-~~~~~~~ 179 (418)
-.-++|.|-.|+|||||| ..+.+. . .-+. .+++- +++.. .+.++.+.+...=......-- . +......
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~q--~--~~dv~~V~~~--IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r 235 (497)
T TIGR03324 162 GQRELILGDRQTGKTAIAIDTILNQ--K--GRNVLCIYCA--IGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQ 235 (497)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHHh--c--CCCcEEEEEE--eccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHH
Confidence 446789999999999996 577773 2 2343 56776 77664 455666666553211110000 0 0101111
Q ss_pred -----HHHHHHHHh--ccCcEEEEEecc
Q 041194 180 -----KKIILHEYL--MTKRYLIVIDDF 200 (418)
Q Consensus 180 -----l~~~l~~~L--~~kr~LlVLDDv 200 (418)
..-.+.+++ ++|.+|||+||+
T Consensus 236 ~~ap~~a~aiAEyfrd~G~~VLlv~Ddl 263 (497)
T TIGR03324 236 YIAPYAATSIGEHFMEQGRDVLIVYDDL 263 (497)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCh
Confidence 112244444 589999999999
No 328
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.68 E-value=0.19 Score=51.55 Aligned_cols=99 Identities=16% Similarity=0.075 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCc-c
Q 041194 92 MEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRL-S 170 (418)
Q Consensus 92 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~-~ 170 (418)
...|-+.|..+=..-.++.|.|.+|+|||||+.++... ....=...+|++ ... +..++... +..++..... .
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs--~EE--s~~qi~~r-a~rlg~~~~~l~ 152 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVS--GEE--SLQQIKMR-AIRLGLPEPNLY 152 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEE--CcC--CHHHHHHH-HHHcCCChHHeE
Confidence 44555555444345679999999999999999998663 222112456777 433 33333322 2334332110 0
Q ss_pred ccccCCHHHHHHHHHHHhccCcEEEEEecc
Q 041194 171 EIMDKNYEMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 171 ~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
-....+.+.+...+.+ .+.-++|+|.+
T Consensus 153 ~~~e~~~~~I~~~i~~---~~~~~vVIDSI 179 (454)
T TIGR00416 153 VLSETNWEQICANIEE---ENPQACVIDSI 179 (454)
T ss_pred EcCCCCHHHHHHHHHh---cCCcEEEEecc
Confidence 0123345555544433 35568999987
No 329
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.66 E-value=0.06 Score=46.95 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 89 DDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 89 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.+.+++|.++|.. ++++++|..|+|||||...+..+
T Consensus 23 ~~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 23 GEGIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CcCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhh
Confidence 4567788888843 68999999999999999999984
No 330
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=94.66 E-value=0.13 Score=52.13 Aligned_cols=90 Identities=9% Similarity=0.107 Sum_probs=47.6
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCC-CCCHHHHHHHHHHHhCCCCCc----cc----cccC
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSN-EYDADQILDIVIKFLMPSSRL----SE----IMDK 175 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~-~~~~~~ll~~il~~l~~~~~~----~~----~~~~ 175 (418)
.-..++|+|..|+|||||++.+..... .+..+... ++. .-+..++....+..-+..... ++ ....
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~~----~dv~vig~--IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl 227 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYTQ----ADVVVVGL--IGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRI 227 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcccC----CCeEEEEE--EeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhH
Confidence 356899999999999999999887322 12222222 222 223334443433332211100 00 0111
Q ss_pred CHHHHHHHHHHHh--ccCcEEEEEecc
Q 041194 176 NYEMKKIILHEYL--MTKRYLIVIDDF 200 (418)
Q Consensus 176 ~~~~l~~~l~~~L--~~kr~LlVLDDv 200 (418)
...+....+.+++ +++.+||++||+
T Consensus 228 ~a~e~a~~iAEyfr~~g~~Vll~~Dsl 254 (434)
T PRK07196 228 KATELCHAIATYYRDKGHDVLLLVDSL 254 (434)
T ss_pred HHHHHHHHHHHHhhhccCCEEEeecch
Confidence 1222333344443 479999999999
No 331
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=94.66 E-value=0.024 Score=54.04 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=19.0
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+.|+|+|-||+||||+|..+..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~ 22 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAA 22 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHH
Confidence 4689999999999998877765
No 332
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.65 E-value=0.044 Score=53.09 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 92 MEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 92 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+++.+........+|+|+|.+|+|||||+..+..
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHH
Confidence 3445555544445688999999999999999999876
No 333
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.18 Score=51.65 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=37.5
Q ss_pred CCCCcccchhhH---HHHHHHHhcC-------CCCceEEEEECCCCCchHHHHHHHHhcCCC
Q 041194 81 KSRDTVGLDDRM---EKLLDLLIEG-------PPQRSMVAILDSIGLDKTAFATEAYNSSYV 132 (418)
Q Consensus 81 ~~~~~vGr~~~~---~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~ 132 (418)
.-.++-|.|+.+ ++|++.|.+. +.-++=|.++|++|.|||-||++|.-...+
T Consensus 302 ~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 302 TFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred ccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 345677877655 5555566553 234677899999999999999999985443
No 334
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.64 E-value=0.042 Score=50.72 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=21.3
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|+|..|+|||||++.+.-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 345899999999999999999975
No 335
>PRK06761 hypothetical protein; Provisional
Probab=94.64 E-value=0.058 Score=51.55 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=21.4
Q ss_pred eEEEEECCCCCchHHHHHHHHhc
Q 041194 107 SMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
++|.|.|++|+||||+|+.+++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDI 26 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999983
No 336
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.64 E-value=0.12 Score=45.62 Aligned_cols=83 Identities=10% Similarity=0.075 Sum_probs=44.3
Q ss_pred eEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCcccc-ccCCHHHHHHHHH
Q 041194 107 SMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEI-MDKNYEMKKIILH 185 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~~-~~~~~~~l~~~l~ 185 (418)
.++.|.|.+|+||||+|..+... ... ..+++. -...+ ..+..+.|......... .. .-....++...+.
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~--~~~---~~~~ia--t~~~~-~~e~~~ri~~h~~~R~~--~w~t~E~~~~l~~~i~ 71 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQ--SGL---QVLYIA--TAQPF-DDEMAARIAHHRQRRPA--HWQTVEEPLDLAELLR 71 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHH--cCC---CcEeCc--CCCCC-hHHHHHHHHHHHhcCCC--CCeEecccccHHHHHH
Confidence 36899999999999999999873 211 123443 33333 33455555444332111 01 1111223444454
Q ss_pred HHhccCcEEEEEecc
Q 041194 186 EYLMTKRYLIVIDDF 200 (418)
Q Consensus 186 ~~L~~kr~LlVLDDv 200 (418)
....+.. ++++|.+
T Consensus 72 ~~~~~~~-~VlID~L 85 (170)
T PRK05800 72 ADAAPGR-CVLVDCL 85 (170)
T ss_pred hhcCCCC-EEEehhH
Confidence 4443323 6888876
No 337
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.63 E-value=0.14 Score=52.74 Aligned_cols=59 Identities=19% Similarity=0.171 Sum_probs=34.4
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCC-CCCCHHHHHHHHHHHhCC
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYS-NEYDADQILDIVIKFLMP 165 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs-~~~~~~~ll~~il~~l~~ 165 (418)
...|++++|..|+||||++.++......+..-..+..+. .. ......+-++...+.++.
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~--~Dt~RigA~EQLr~~AeilGV 314 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLT--TDSYRIGGHEQLRIYGKILGV 314 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEe--CCccchhHHHHHHHHHHHhCC
Confidence 357999999999999999998886321121111233444 21 122334445555555554
No 338
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.62 E-value=0.11 Score=52.02 Aligned_cols=38 Identities=16% Similarity=0.002 Sum_probs=29.4
Q ss_pred CCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
.....+-|||..|.|||.|++.+.+ ...........+.
T Consensus 111 ~~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y 148 (408)
T COG0593 111 GAYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVY 148 (408)
T ss_pred CcCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEe
Confidence 3578999999999999999999999 6655555333333
No 339
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=94.62 E-value=0.12 Score=52.77 Aligned_cols=87 Identities=13% Similarity=0.046 Sum_probs=48.9
Q ss_pred ceEEEEECCCCCchHHHH-HHHHhcCCCCCCccee-eeeecCCCCCC-CHHHHHHHHHHHhCCCCCccc--c-ccCCH--
Q 041194 106 RSMVAILDSIGLDKTAFA-TEAYNSSYVKHYFDCH-AWITEPYSNEY-DADQILDIVIKFLMPSSRLSE--I-MDKNY-- 177 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA-~~v~~d~~~~~~F~~~-~wv~~~vs~~~-~~~~ll~~il~~l~~~~~~~~--~-~~~~~-- 177 (418)
-.-++|.|-.|+|||||| ..+.+. . .-+.. +++- +++.. .+.++.+.+...=......-- . +....
T Consensus 141 GQR~~I~g~~g~GKt~Lal~~I~~q--~--~~dv~cV~~~--IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r 214 (485)
T CHL00059 141 GQRELIIGDRQTGKTAVATDTILNQ--K--GQNVICVYVA--IGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQ 214 (485)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHhc--c--cCCeEEEEEE--ecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHH
Confidence 346799999999999995 456662 2 22433 6666 76554 555666665543211110000 0 11111
Q ss_pred -------HHHHHHHHHHhccCcEEEEEecc
Q 041194 178 -------EMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 178 -------~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
-.+.+.++. +++.+|||+||+
T Consensus 215 ~~ap~~a~aiAEyfr~--~G~~VLlv~Ddl 242 (485)
T CHL00059 215 YLAPYTGAALAEYFMY--RGRHTLIIYDDL 242 (485)
T ss_pred HHHHHHHhhHHHHHHH--cCCCEEEEEcCh
Confidence 123344443 479999999999
No 340
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.62 E-value=0.032 Score=45.19 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=20.0
Q ss_pred ceEEEEECCCCCchHHHHHHHH
Q 041194 106 RSMVAILDSIGLDKTAFATEAY 127 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~ 127 (418)
-..++|+|..|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999976
No 341
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.61 E-value=0.11 Score=45.81 Aligned_cols=79 Identities=11% Similarity=0.086 Sum_probs=44.7
Q ss_pred EEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccccccCCHHHHHHHHHHHh
Q 041194 109 VAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYL 188 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L 188 (418)
+.|.|.+|+|||++|.++... .....+++. -++.++.+ ..+.|.+...... ..+...+....+.+.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~a--t~~~~d~e-m~~rI~~H~~~R~-----~~w~t~E~~~~l~~~l 68 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIA--TAEAFDDE-MAERIARHRKRRP-----AHWRTIETPRDLVSAL 68 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEE--ccCcCCHH-HHHHHHHHHHhCC-----CCceEeecHHHHHHHH
Confidence 678999999999999998762 223456776 66666553 4444444322211 1122222223344444
Q ss_pred cc--CcEEEEEecc
Q 041194 189 MT--KRYLIVIDDF 200 (418)
Q Consensus 189 ~~--kr~LlVLDDv 200 (418)
.. +.-.|++|.+
T Consensus 69 ~~~~~~~~VLIDcl 82 (169)
T cd00544 69 KELDPGDVVLIDCL 82 (169)
T ss_pred HhcCCCCEEEEEcH
Confidence 22 2337889986
No 342
>PRK06620 hypothetical protein; Validated
Probab=94.61 E-value=0.061 Score=49.38 Aligned_cols=23 Identities=17% Similarity=-0.054 Sum_probs=20.9
Q ss_pred eEEEEECCCCCchHHHHHHHHhc
Q 041194 107 SMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
+.+-|+|++|+|||+|++.+.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 67899999999999999998883
No 343
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.61 E-value=0.23 Score=51.72 Aligned_cols=47 Identities=15% Similarity=-0.009 Sum_probs=38.8
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|-+..++.|...+..+. -..+..++|..|+||||+|+.+.+
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk 58 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFAR 58 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHH
Confidence 34578999999999999987663 345678999999999999998876
No 344
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.60 E-value=0.048 Score=48.77 Aligned_cols=90 Identities=18% Similarity=0.131 Sum_probs=46.1
Q ss_pred eEEEEECCCCCchHHHHHHHHhcCCCCCCc--------ceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccc---c---
Q 041194 107 SMVAILDSIGLDKTAFATEAYNSSYVKHYF--------DCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSE---I--- 172 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F--------~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~---~--- 172 (418)
.+..|+|.+|+||||++..+....-....| ..++|++ ...+ ..++.+.+............ .
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~--~E~~--~~~~~~rl~~~~~~~~~~~~~~~~~~~ 108 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYIS--LEDS--ESQIARRLRALLQDYDDDANLFFVDLS 108 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEE--SSS---HHHHHHHHHHHHTTS-HHHHHHHHHH-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEe--ccCC--HHHHHHHHHHHhcccCCccceEEeecc
Confidence 488999999999999998887642222222 2456776 4433 33444444433322110000 0
Q ss_pred ------------ccCCHHHHHHHHHHHhcc--CcEEEEEecc
Q 041194 173 ------------MDKNYEMKKIILHEYLMT--KRYLIVIDDF 200 (418)
Q Consensus 173 ------------~~~~~~~l~~~l~~~L~~--kr~LlVLDDv 200 (418)
.....+...+.+.+.+.. +--+||+|.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l 150 (193)
T PF13481_consen 109 NWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPL 150 (193)
T ss_dssp -E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-G
T ss_pred ccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCH
Confidence 001123445566666654 4669999987
No 345
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.59 E-value=0.026 Score=49.04 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=25.1
Q ss_pred EEEEECCCCCchHHHHHHHHhcCCCCC-Ccceeeeee
Q 041194 108 MVAILDSIGLDKTAFATEAYNSSYVKH-YFDCHAWIT 143 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d~~~~~-~F~~~~wv~ 143 (418)
|++|+|+.|+|||||+..+.. .++. .+...+.-+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~--~l~~~G~~V~viK~ 35 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVK--ALKARGYRVATIKH 35 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEec
Confidence 589999999999999999998 4433 344444433
No 346
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.58 E-value=0.075 Score=52.59 Aligned_cols=50 Identities=20% Similarity=0.207 Sum_probs=42.3
Q ss_pred ccCCCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 78 SSSKSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 78 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.|.....++|-++..+.+...+..+. -...+.|+|..|+||||+|..+.+
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~ 67 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLAN 67 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHH
Confidence 44567789999999999999997663 345688999999999999998887
No 347
>PLN02674 adenylate kinase
Probab=94.57 E-value=0.22 Score=46.59 Aligned_cols=23 Identities=9% Similarity=0.076 Sum_probs=20.6
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...|.|.|++|+||||+|+.+..
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~ 53 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKD 53 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999988
No 348
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.57 E-value=0.045 Score=50.27 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=18.5
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.|+|+|-||+||||+|..+..
T Consensus 2 kIaI~GKGG~GKTtiaalll~ 22 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLK 22 (255)
T ss_pred eEEEecCCCccHHHHHHHHHH
Confidence 689999999999999988544
No 349
>PLN02348 phosphoribulokinase
Probab=94.54 E-value=0.051 Score=54.06 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=23.6
Q ss_pred CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 103 PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 103 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+..-+|+|.|.+|+||||+|+.+.+
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999999988
No 350
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.53 E-value=0.032 Score=48.47 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.++++|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 58999999999999999988877
No 351
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.52 E-value=0.055 Score=57.01 Aligned_cols=48 Identities=13% Similarity=0.026 Sum_probs=37.9
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.++..+.|.+-.+.|.+.......+..+|.|+|+.|+||||+|+.+..
T Consensus 367 ~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~ 414 (568)
T PRK05537 367 EIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMV 414 (568)
T ss_pred CCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHH
Confidence 456667777777766666555555567999999999999999999998
No 352
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.51 E-value=0.03 Score=49.35 Aligned_cols=20 Identities=20% Similarity=0.311 Sum_probs=17.8
Q ss_pred EEEECCCCCchHHHHHHHHh
Q 041194 109 VAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~ 128 (418)
|.|.|.+|+|||||++.+.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 67999999999999999988
No 353
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.50 E-value=0.033 Score=48.68 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=20.1
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+|.|.|..|+||||+|+.+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~ 22 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAE 22 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999988
No 354
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.50 E-value=0.67 Score=47.11 Aligned_cols=74 Identities=18% Similarity=0.144 Sum_probs=45.7
Q ss_pred ccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCC
Q 041194 86 VGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMP 165 (418)
Q Consensus 86 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~ 165 (418)
.|..-....|-+++. +=..-.++.|.|.+|+|||++|..+..+......+ .++|++ -..+..++...++.....
T Consensus 175 ~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~-~v~~fS----lEm~~~~l~~Rl~~~~~~ 248 (421)
T TIGR03600 175 TGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGK-PVLFFS----LEMSAEQLGERLLASKSG 248 (421)
T ss_pred cceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCC-cEEEEE----CCCCHHHHHHHHHHHHcC
Confidence 344434444444443 32234588999999999999999998532222333 345555 445777888887776543
No 355
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.49 E-value=0.053 Score=50.03 Aligned_cols=91 Identities=18% Similarity=0.227 Sum_probs=53.2
Q ss_pred CCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCC-------------cc
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSR-------------LS 170 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~-------------~~ 170 (418)
+.-.++.|.|.+|+|||+||.++... ..++.=+..+|++ ...+ ..++.+.+- .++-+.. .+
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~-~~~~~ge~vlyvs--~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~ 90 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYN-GLKNFGEKVLYVS--FEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFP 90 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH-HHHHHT--EEEEE--SSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSG
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH-hhhhcCCcEEEEE--ecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEeccc
Confidence 45679999999999999999886542 1111012356777 5443 344444432 3332100 00
Q ss_pred ccc---cCCHHHHHHHHHHHhcc-CcEEEEEecc
Q 041194 171 EIM---DKNYEMKKIILHEYLMT-KRYLIVIDDF 200 (418)
Q Consensus 171 ~~~---~~~~~~l~~~l~~~L~~-kr~LlVLDDv 200 (418)
... ..+.+.+...+.+.++. +...+|+|.+
T Consensus 91 ~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 91 ERIGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp GGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred ccccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 000 35677788888887765 4578899975
No 356
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=94.48 E-value=0.039 Score=47.43 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=19.9
Q ss_pred EEEEECCCCCchHHHHHHHHhc
Q 041194 108 MVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-|+++|.+|+|||||+..+.++
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
No 357
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=94.47 E-value=0.099 Score=53.07 Aligned_cols=25 Identities=8% Similarity=0.145 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCchHHHHHHHHhc
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.-..++|+|..|+|||||.+.+.+.
T Consensus 174 ~Gqri~I~G~sG~GKTTLL~~Ia~~ 198 (455)
T PRK07960 174 RGQRMGLFAGSGVGKSVLLGMMARY 198 (455)
T ss_pred CCcEEEEECCCCCCccHHHHHHhCC
Confidence 3567899999999999999999873
No 358
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.45 E-value=0.028 Score=49.07 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=17.3
Q ss_pred EEEECCCCCchHHHHHHHHh
Q 041194 109 VAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~ 128 (418)
|+|+|..|+|||||++.+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999998
No 359
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.45 E-value=0.039 Score=50.31 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=23.2
Q ss_pred CCceEEEEECCCCCchHHHHHHHHh
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.++++|+++|..|+|||||..++.+
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999999987
No 360
>PLN02200 adenylate kinase family protein
Probab=94.43 E-value=0.037 Score=51.54 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=21.8
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+|.|.|++|+||||+|+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 361
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.43 E-value=0.049 Score=57.04 Aligned_cols=45 Identities=22% Similarity=0.239 Sum_probs=37.1
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|.+..++.+...+.... ..-+.|+|.+|+|||++|+.+++
T Consensus 64 f~~iiGqs~~i~~l~~al~~~~--~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGPN--PQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999998876543 34567999999999999999986
No 362
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.43 E-value=0.17 Score=49.85 Aligned_cols=55 Identities=22% Similarity=0.254 Sum_probs=38.3
Q ss_pred CCCcccchhhHHH---HHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcce
Q 041194 82 SRDTVGLDDRMEK---LLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDC 138 (418)
Q Consensus 82 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~ 138 (418)
...+||..+.++. +++++..+.-.-+.|.+.|++|.|||+||..+.+ ++....+.
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~--eLG~~~PF 80 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAK--ELGEDVPF 80 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHH--HCTTTS-E
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHH--HhCCCCCe
Confidence 4588997666554 6677766654568899999999999999999999 66655543
No 363
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.42 E-value=0.32 Score=43.14 Aligned_cols=91 Identities=11% Similarity=0.173 Sum_probs=49.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecC-CCCCCCHHHH------HHHHHHHhCCCCCccc-cccCCH
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEP-YSNEYDADQI------LDIVIKFLMPSSRLSE-IMDKNY 177 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~-vs~~~~~~~l------l~~il~~l~~~~~~~~-~~~~~~ 177 (418)
-.+++|+|..|.|||||.+.+... . ......+++.+. +.. .+.... .-++++.++....... ....+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~--~-~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL--L-KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--C-CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 468999999999999999999883 2 223445554310 221 122221 1124455443211000 112222
Q ss_pred -HHHHHHHHHHhccCcEEEEEecc
Q 041194 178 -EMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 178 -~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
+...-.+...|....-+++||+-
T Consensus 101 G~~qrl~laral~~~p~llllDEP 124 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEP 124 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCC
Confidence 22233466666677888899984
No 364
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.40 E-value=0.19 Score=46.70 Aligned_cols=50 Identities=8% Similarity=0.227 Sum_probs=31.3
Q ss_pred CCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHH
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIV 159 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~i 159 (418)
+.-.++.|.|.+|+||||||.++... -.+.. ...++++ ..-+..++++.+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~----~e~~~~~~~~~~ 71 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVS----TQLTTTEFIKQM 71 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEe----CCCCHHHHHHHH
Confidence 34569999999999999998665442 22222 2335554 233456666665
No 365
>PRK05973 replicative DNA helicase; Provisional
Probab=94.40 E-value=0.21 Score=46.47 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=32.2
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHH
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVI 160 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il 160 (418)
.-.++.|.|.+|+|||++|.++.... .++. ...++++ .. .+..++...+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~-a~~G-e~vlyfS--lE--es~~~i~~R~~ 112 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEA-MKSG-RTGVFFT--LE--YTEQDVRDRLR 112 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH-HhcC-CeEEEEE--Ee--CCHHHHHHHHH
Confidence 35689999999999999999886632 2222 2345555 33 34555655543
No 366
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.38 E-value=0.19 Score=52.11 Aligned_cols=102 Identities=15% Similarity=0.035 Sum_probs=60.1
Q ss_pred HHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCc--
Q 041194 92 MEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRL-- 169 (418)
Q Consensus 92 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~-- 169 (418)
...|-++|..+=..-.++.|.|.+|+|||||+.++... ....=...++++ -.-+..++.+.+ +.++-+...
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s----~eEs~~~i~~~~-~~lg~~~~~~~ 321 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFA----YEESRAQLLRNA-YSWGIDFEEME 321 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEE----eeCCHHHHHHHH-HHcCCChHHHh
Confidence 34455555554356789999999999999999988773 222223345655 233455565553 444432110
Q ss_pred ----c-----ccccCCHHHHHHHHHHHhcc-CcEEEEEecc
Q 041194 170 ----S-----EIMDKNYEMKKIILHEYLMT-KRYLIVIDDF 200 (418)
Q Consensus 170 ----~-----~~~~~~~~~l~~~l~~~L~~-kr~LlVLDDv 200 (418)
- .......++....+.+.+.. +.-.+|+|.+
T Consensus 322 ~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 322 QQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred hCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 0 01123446667777777754 4457888865
No 367
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.37 E-value=0.045 Score=49.74 Aligned_cols=53 Identities=19% Similarity=0.135 Sum_probs=36.2
Q ss_pred cchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 87 GLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 87 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
.+..+-...++.|. ...++.+.|++|.|||.||....-+.-..+.|+..+++.
T Consensus 4 p~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 45556667777777 256999999999999999988876544457788877776
No 368
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.36 E-value=0.26 Score=46.73 Aligned_cols=53 Identities=11% Similarity=0.066 Sum_probs=36.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCc-ceeeeeecCCCCCCCHHHHHHHHHHHhC
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYF-DCHAWITEPYSNEYDADQILDIVIKFLM 164 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F-~~~~wv~~~vs~~~~~~~ll~~il~~l~ 164 (418)
-.++.|.|.+|+||||++.++... ..... ..++|++ ... +..++...+...+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~--~~~~~g~~vl~iS--~E~--~~~~~~~r~~~~~~ 83 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALD--LITQHGVRVGTIS--LEE--PVVRTARRLLGQYA 83 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH--HHHhcCceEEEEE--ccc--CHHHHHHHHHHHHh
Confidence 458889999999999999988773 22221 3466877 544 45667777666543
No 369
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.36 E-value=0.037 Score=49.19 Aligned_cols=22 Identities=9% Similarity=0.136 Sum_probs=20.8
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+++|+|..|+|||||++.+..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999999998
No 370
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.34 E-value=0.21 Score=50.67 Aligned_cols=90 Identities=9% Similarity=0.056 Sum_probs=50.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCc--cccccCC------H
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRL--SEIMDKN------Y 177 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~--~~~~~~~------~ 177 (418)
-..++|+|..|+|||||++.+....+. ....+... -.+.....++++..+..-+..... ......+ .
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~i--Gerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLV--GERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeC--CCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 457899999999999999999884321 12233332 233466667766655543221100 0001111 1
Q ss_pred HHHHHHHHHHh--ccCcEEEEEecc
Q 041194 178 EMKKIILHEYL--MTKRYLIVIDDF 200 (418)
Q Consensus 178 ~~l~~~l~~~L--~~kr~LlVLDDv 200 (418)
......+.+++ ++|.+||++||+
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDsl 255 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSV 255 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecch
Confidence 11222344444 479999999998
No 371
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.34 E-value=0.034 Score=50.86 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=18.7
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
++|+|.|-||+||||++..+..
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~ 22 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSA 22 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHH
Confidence 4789999999999997776665
No 372
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=94.34 E-value=0.1 Score=52.89 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-..++|+|..|+|||||++.+...
T Consensus 157 Gq~~~i~G~sG~GKStLl~~i~~~ 180 (434)
T PRK08472 157 GQKLGIFAGSGVGKSTLMGMIVKG 180 (434)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc
Confidence 458899999999999999999873
No 373
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.34 E-value=0.25 Score=52.65 Aligned_cols=47 Identities=15% Similarity=0.093 Sum_probs=39.1
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|-+..++.|.+++..+. -...+.++|..|+||||+|+.+..
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk 61 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAK 61 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999997663 345688999999999999988876
No 374
>PHA02244 ATPase-like protein
Probab=94.33 E-value=0.077 Score=52.44 Aligned_cols=45 Identities=9% Similarity=0.101 Sum_probs=30.6
Q ss_pred CCCCCcccchhh----HHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 80 SKSRDTVGLDDR----MEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 80 ~~~~~~vGr~~~----~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
--+..++|.... ...+..++..+ .-|.|+|.+|+|||+||+.+.+
T Consensus 93 ~~d~~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 93 GIDTTKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred hCCCcccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHH
Confidence 344556664433 34455555433 2467899999999999999998
No 375
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=94.32 E-value=0.034 Score=53.16 Aligned_cols=22 Identities=9% Similarity=0.086 Sum_probs=19.1
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
++|+|+|-||+||||+|..+..
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~ 23 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAA 23 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 5789999999999998877665
No 376
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.31 E-value=0.079 Score=47.51 Aligned_cols=22 Identities=23% Similarity=0.092 Sum_probs=20.8
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..|+|.|..|+||||+|+.+.+
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~ 25 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKK 25 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 377
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=94.30 E-value=0.034 Score=52.95 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=19.0
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
++|+|+|-||+||||+|..+..
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~ 23 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTA 23 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 5788999999999998877765
No 378
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.29 E-value=0.062 Score=54.29 Aligned_cols=47 Identities=19% Similarity=0.242 Sum_probs=35.5
Q ss_pred CCCcccchhhHHHHHHHHhc-------C-------CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIE-------G-------PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~-------~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...++|.++.++.|...+.. . .....-+.++|++|+|||+||+.+..
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 34689999998888665521 1 01235688999999999999999987
No 379
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=94.27 E-value=0.042 Score=49.90 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.7
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|+|+|+.|+||||.|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999997766
No 380
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.27 E-value=0.056 Score=57.20 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=40.4
Q ss_pred CCCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 80 SKSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 80 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..-.+++|.+..++.|.+++..+. -..-+.++|+.|+||||+|+.+.+
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk 68 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILAR 68 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999998663 344678999999999999999987
No 381
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.26 E-value=0.13 Score=52.20 Aligned_cols=92 Identities=12% Similarity=0.160 Sum_probs=52.8
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCC-CCHHHHHHHHHHHhCCCCCcc--ccccCC-HHH--
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNE-YDADQILDIVIKFLMPSSRLS--EIMDKN-YEM-- 179 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~-~~~~~ll~~il~~l~~~~~~~--~~~~~~-~~~-- 179 (418)
-.-++|.|.+|+|||||+..+..+... ++=...+++- ++.. ..+.++++++...=......- .....+ ...
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~-~~~~v~V~al--IGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAG--VGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHh-cCCCeEEEEE--ecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 446899999999999999998763211 1113556666 6654 355677776654211111000 001111 111
Q ss_pred ---HHHHHHHHh---ccCcEEEEEecc
Q 041194 180 ---KKIILHEYL---MTKRYLIVIDDF 200 (418)
Q Consensus 180 ---l~~~l~~~L---~~kr~LlVLDDv 200 (418)
..-.+.+++ +++.+||++||+
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~Dsl 246 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecch
Confidence 223466666 468999999999
No 382
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.26 E-value=0.034 Score=46.72 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-.+++|+|..|+|||||.+.+...
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEEccCCCccccceeeeccc
Confidence 358999999999999999998873
No 383
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.26 E-value=0.031 Score=52.50 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=19.2
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.|.++|++|+||||+|+.+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 384
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=94.23 E-value=0.034 Score=50.68 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=21.0
Q ss_pred eEEEEECCCCCchHHHHHHHHhc
Q 041194 107 SMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.-|+|+|.+|+|||||+..+.++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC
Confidence 56889999999999999999986
No 385
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.23 E-value=0.037 Score=48.59 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=20.0
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+.|.|+|+.|+||||+|+.+.+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~ 24 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQ 24 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999999998
No 386
>PLN02924 thymidylate kinase
Probab=94.23 E-value=0.15 Score=47.07 Aligned_cols=25 Identities=4% Similarity=-0.003 Sum_probs=22.5
Q ss_pred CceEEEEECCCCCchHHHHHHHHhc
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.-..|+|-|..|+||||+|+.+.+.
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~ 39 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSF 39 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999983
No 387
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.22 E-value=0.075 Score=47.54 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=26.7
Q ss_pred hhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 90 DRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 90 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+..+++...... -..+.|+|..|+|||||++.+..
T Consensus 12 ~~~~~~l~~~v~~---g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 12 PLQAAYLWLAVEA---RKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred HHHHHHHHHHHhC---CCEEEEECCCCCCHHHHHHHHHh
Confidence 3444444444433 35899999999999999999887
No 388
>PRK06820 type III secretion system ATPase; Validated
Probab=94.20 E-value=0.14 Score=51.95 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=20.6
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-..++|+|..|+|||||++.+..
T Consensus 163 Gqri~I~G~sG~GKStLl~~I~~ 185 (440)
T PRK06820 163 GQRIGIFAAAGVGKSTLLGMLCA 185 (440)
T ss_pred CCEEEEECCCCCChHHHHHHHhc
Confidence 34789999999999999998887
No 389
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=0.25 Score=49.11 Aligned_cols=98 Identities=20% Similarity=0.165 Sum_probs=58.7
Q ss_pred HHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccc
Q 041194 92 MEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSE 171 (418)
Q Consensus 92 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~ 171 (418)
..++-..|-.+=-.-.+|.|-|-+|+|||||.-++.. ++...- ..++|+ ..-+..++ +--+..++.+.+...
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVs----GEES~~Qi-klRA~RL~~~~~~l~ 150 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVS----GEESLQQI-KLRADRLGLPTNNLY 150 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEe----CCcCHHHH-HHHHHHhCCCccceE
Confidence 3444444544322356999999999999999999988 444333 566766 33333332 223445554322111
Q ss_pred -cccCCHHHHHHHHHHHhccCcEEEEEecc
Q 041194 172 -IMDKNYEMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 172 -~~~~~~~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
....+.+++.+.+.+ .|.-|+|+|-+
T Consensus 151 l~aEt~~e~I~~~l~~---~~p~lvVIDSI 177 (456)
T COG1066 151 LLAETNLEDIIAELEQ---EKPDLVVIDSI 177 (456)
T ss_pred EehhcCHHHHHHHHHh---cCCCEEEEecc
Confidence 234455555555554 68889999998
No 390
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.15 E-value=0.042 Score=48.32 Aligned_cols=28 Identities=11% Similarity=0.203 Sum_probs=23.5
Q ss_pred eEEEEECCCCCchHHHHHHHHhcCCCCCCc
Q 041194 107 SMVAILDSIGLDKTAFATEAYNSSYVKHYF 136 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F 136 (418)
+-|.++||.|+||||+.+.+.+ .+.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk--~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAK--ALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHH--HcCCCc
Confidence 3478999999999999999998 555555
No 391
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.15 E-value=0.039 Score=49.35 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=19.0
Q ss_pred EEEECCCCCchHHHHHHHHh
Q 041194 109 VAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~ 128 (418)
|.|.|++|+||||+|+.+..
T Consensus 2 I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999988
No 392
>PRK08356 hypothetical protein; Provisional
Probab=94.15 E-value=0.043 Score=49.53 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.7
Q ss_pred ceEEEEECCCCCchHHHHHHHH
Q 041194 106 RSMVAILDSIGLDKTAFATEAY 127 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~ 127 (418)
..+|+|+|++|+||||+|+.+-
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999999993
No 393
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=94.13 E-value=0.15 Score=51.95 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-..++|.|..|+|||||++.+...
T Consensus 163 Gq~~~I~G~sG~GKStLl~~I~~~ 186 (440)
T TIGR01026 163 GQRIGIFAGSGVGKSTLLGMIARN 186 (440)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999873
No 394
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.10 E-value=0.048 Score=48.36 Aligned_cols=25 Identities=8% Similarity=0.255 Sum_probs=22.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcC
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSS 130 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~ 130 (418)
-.++.|.|++|+|||||++.++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4689999999999999999999953
No 395
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=94.09 E-value=0.25 Score=50.10 Aligned_cols=89 Identities=12% Similarity=0.179 Sum_probs=47.8
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCC-CCCCHHHHHHHHHHHhCCCCCcc--ccccCCHH----
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYS-NEYDADQILDIVIKFLMPSSRLS--EIMDKNYE---- 178 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs-~~~~~~~ll~~il~~l~~~~~~~--~~~~~~~~---- 178 (418)
-..++|.|..|+|||||.+.+... ... +....+. ++ +..+..++..+...........- .....+..
T Consensus 145 Gq~~~I~G~sG~GKStLl~~I~~~--~~~--~~~vi~~--iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~ 218 (422)
T TIGR02546 145 GQRIGIFAGAGVGKSTLLGMIARG--ASA--DVNVIAL--IGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLK 218 (422)
T ss_pred CCEEEEECCCCCChHHHHHHHhCC--CCC--CEEEEEE--EccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHH
Confidence 457899999999999999999983 322 2223233 33 33455555544433221111100 00011111
Q ss_pred --HHHHHHHHHh--ccCcEEEEEecc
Q 041194 179 --MKKIILHEYL--MTKRYLIVIDDF 200 (418)
Q Consensus 179 --~l~~~l~~~L--~~kr~LlVLDDv 200 (418)
...-.+.+++ +++++|+++||+
T Consensus 219 ~~~~a~~~AE~f~~~g~~Vl~~~Dsl 244 (422)
T TIGR02546 219 AAYTATAIAEYFRDQGKRVLLMMDSL 244 (422)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1222344444 468999999999
No 396
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.08 E-value=0.11 Score=43.35 Aligned_cols=47 Identities=13% Similarity=0.160 Sum_probs=34.0
Q ss_pred CCcccchhhHHHHHHHHh----cC-CCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 83 RDTVGLDDRMEKLLDLLI----EG-PPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~----~~-~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..++|-.-..+.+++.|. .. ...+-|++..|.+|+|||.+|+.+.+.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 456776655555555554 32 457789999999999999988777663
No 397
>PRK14532 adenylate kinase; Provisional
Probab=94.08 E-value=0.041 Score=49.15 Aligned_cols=20 Identities=10% Similarity=0.081 Sum_probs=18.8
Q ss_pred EEEECCCCCchHHHHHHHHh
Q 041194 109 VAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~ 128 (418)
|.|.|++|+||||+|+.+..
T Consensus 3 i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77899999999999999987
No 398
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=94.08 E-value=0.039 Score=52.21 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=19.2
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
++|+|.|-||+||||+|..+..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~ 23 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSA 23 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHH
Confidence 5788889999999998888766
No 399
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.07 E-value=0.042 Score=42.51 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=18.9
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
++.+.|.+|+||||++..+..
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~ 21 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAA 21 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999998887
No 400
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.06 E-value=0.076 Score=49.56 Aligned_cols=48 Identities=21% Similarity=0.235 Sum_probs=38.0
Q ss_pred CCCcccchhhHHH---HHHHHhcC----CCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 82 SRDTVGLDDRMEK---LLDLLIEG----PPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 82 ~~~~vGr~~~~~~---l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-.+++|-++.+.+ |++.|... +-..+-|..+|++|.|||-+|+.+.|.
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane 174 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE 174 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc
Confidence 4578898877654 56666653 346888999999999999999999993
No 401
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=94.06 E-value=0.063 Score=47.92 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=21.8
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.++|.|+|++|+|||||+..+...
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999883
No 402
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.05 E-value=0.05 Score=47.47 Aligned_cols=22 Identities=14% Similarity=0.221 Sum_probs=20.8
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
++++|+|..|+|||||+..+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999988
No 403
>PRK13236 nitrogenase reductase; Reviewed
Probab=94.05 E-value=0.049 Score=52.63 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=20.8
Q ss_pred CCceEEEEECCCCCchHHHHHHHHh
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
++.+||++.|-||+||||+|..+..
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~ 28 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLA 28 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHH
Confidence 4579999999999999997766544
No 404
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.03 E-value=0.055 Score=53.34 Aligned_cols=48 Identities=17% Similarity=0.098 Sum_probs=38.4
Q ss_pred CCCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 80 SKSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 80 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.+-+.+||-++.+..|+..+.+.. +.-|.|.|..|+||||+|+.+++-
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p~--~~~vli~G~~GtGKs~~ar~~~~~ 61 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDPK--IGGVMIMGDRGTGKSTTIRALVDL 61 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCCC--CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 355688999988888877776643 555679999999999999999763
No 405
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=94.01 E-value=0.039 Score=49.04 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=19.5
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+|+|+|+.|+||||+|+.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999877
No 406
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.00 E-value=0.078 Score=52.10 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=35.9
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-+.+||-++.+..|+-.+.+.. ..-+.|.|..|+|||||++.+..
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~--~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPK--IGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCC--CCeEEEEcCCCCCHHHHHHHHHH
Confidence 3568999999888776666542 34567999999999999999976
No 407
>PRK00698 tmk thymidylate kinase; Validated
Probab=94.00 E-value=0.049 Score=49.15 Aligned_cols=23 Identities=13% Similarity=0.013 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-++|+|.|+.|+||||+++.+.+
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~ 25 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKE 25 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 408
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=0.18 Score=52.73 Aligned_cols=55 Identities=20% Similarity=0.105 Sum_probs=41.6
Q ss_pred CCCCCcccchhhHHHHHHHHhcC-----------CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCc
Q 041194 80 SKSRDTVGLDDRMEKLLDLLIEG-----------PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF 136 (418)
Q Consensus 80 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F 136 (418)
..-.++-|.++-+.+|.+.+... -...+=|..+|++|+|||++|+.+.+ +..-.|
T Consensus 431 v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF 496 (693)
T KOG0730|consen 431 VSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF 496 (693)
T ss_pred CChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe
Confidence 34455666888888887776542 14678889999999999999999999 555555
No 409
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.98 E-value=0.065 Score=55.71 Aligned_cols=59 Identities=15% Similarity=0.233 Sum_probs=44.5
Q ss_pred CCCCcccchhhHHHHHHHHhcC---CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEG---PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
...+++--.+-++++.+||... ....+++.+.|++|+||||.++.+++ +. .|+.+-|.+
T Consensus 17 ~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~--el--g~~v~Ew~n 78 (519)
T PF03215_consen 17 TLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAK--EL--GFEVQEWIN 78 (519)
T ss_pred CHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHH--Hh--CCeeEEecC
Confidence 3445555667888999999763 33467999999999999999999998 33 356666764
No 410
>PRK01184 hypothetical protein; Provisional
Probab=93.96 E-value=0.046 Score=48.65 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=18.1
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+|+|+|++|+||||+|+ +..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~ 22 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAR 22 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHH
Confidence 489999999999999987 444
No 411
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.95 E-value=0.29 Score=51.10 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=41.2
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 82 SRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
...++|....+.++.+.+..-.....-|.|+|..|+|||++|+.+++.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 457899999999999988775445667899999999999999999984
No 412
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.93 E-value=0.46 Score=46.69 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=35.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCC-CHHHHHHHHH
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEY-DADQILDIVI 160 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~-~~~~ll~~il 160 (418)
-..++|.|..|+|||+|++++.+.. +-+..+++- ++... .+.+++.++-
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~--iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVG--CGERGNEMTEVLEEFP 206 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEE--eCCChHHHHHHHHHHH
Confidence 3478999999999999999999942 224667776 76554 4456666653
No 413
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.93 E-value=0.048 Score=52.02 Aligned_cols=28 Identities=11% Similarity=0.075 Sum_probs=23.8
Q ss_pred eEEEEECCCCCchHHHHHHHHhcCCCCCCc
Q 041194 107 SMVAILDSIGLDKTAFATEAYNSSYVKHYF 136 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F 136 (418)
++|+|+|.+|+|||||+..+.. .+++..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~--~L~~~G 29 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVD--RLSGRG 29 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HHHhCC
Confidence 5899999999999999999998 555443
No 414
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=93.93 E-value=0.086 Score=51.29 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=22.6
Q ss_pred CCceEEEEECCCCCchHHHHHHHHh
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.....|.++|+.|+||||+++.+..
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~ 155 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAA 155 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999988
No 415
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.93 E-value=0.049 Score=52.52 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=20.4
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+|.++|.+|+||||+|+.+..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~ 24 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAA 24 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5788999999999999999987
No 416
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=93.92 E-value=0.061 Score=46.42 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.5
Q ss_pred EEEEECCCCCchHHHHHHHHhc
Q 041194 108 MVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-|+|+|.+|+|||||+..+.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999874
No 417
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=93.91 E-value=0.049 Score=46.47 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.4
Q ss_pred eEEEEECCCCCchHHHHHHHHhc
Q 041194 107 SMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
+-|.++|..|+|||||++.+-..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 45789999999999999999874
No 418
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=93.90 E-value=0.048 Score=44.48 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=19.6
Q ss_pred EEEECCCCCchHHHHHHHHhc
Q 041194 109 VAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~d 129 (418)
|+|+|+.|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999973
No 419
>PRK09087 hypothetical protein; Validated
Probab=93.89 E-value=0.048 Score=50.50 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.+.+.|+|..|+|||+|++.+++.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999998873
No 420
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.89 E-value=0.11 Score=47.15 Aligned_cols=42 Identities=21% Similarity=0.239 Sum_probs=32.3
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 83 RDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+++|-+..+..|.-..... .=+.++|.+|+|||+||+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~----h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG----HHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC------EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcCC----CCeEEECCCCCCHHHHHHHHHH
Confidence 57888888887777766643 4688999999999999999976
No 421
>PLN02796 D-glycerate 3-kinase
Probab=93.89 E-value=0.056 Score=52.93 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=22.4
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..-+|+|.|..|+|||||++.+..
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~ 122 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVY 122 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 567899999999999999999988
No 422
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=93.87 E-value=0.053 Score=46.74 Aligned_cols=21 Identities=14% Similarity=0.253 Sum_probs=19.4
Q ss_pred EEEECCCCCchHHHHHHHHhc
Q 041194 109 VAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~d 129 (418)
|+++|.+|+|||||+..+.+.
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999875
No 423
>COG4639 Predicted kinase [General function prediction only]
Probab=93.87 E-value=0.037 Score=47.57 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=20.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..+++..|.+|+||+|.|+.-+.+
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~~~ 25 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENFLQ 25 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhCCC
Confidence 468899999999999999985543
No 424
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=93.87 E-value=0.047 Score=54.97 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=22.5
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+.|+|+|..|+||||||+.+.+
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~ 241 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLAN 241 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999999998
No 425
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=93.85 E-value=0.21 Score=48.52 Aligned_cols=73 Identities=12% Similarity=0.155 Sum_probs=48.9
Q ss_pred hhhHHHHHHHHhcCC-CCceEEEEECCCCCchHHHHHHHHhcCCCCCC----c---ceeeeeecCCCCCCCHHHHHHHHH
Q 041194 89 DDRMEKLLDLLIEGP-PQRSMVAILDSIGLDKTAFATEAYNSSYVKHY----F---DCHAWITEPYSNEYDADQILDIVI 160 (418)
Q Consensus 89 ~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~----F---~~~~wv~~~vs~~~~~~~ll~~il 160 (418)
+.-.+.|.+.|...+ ....+|+|.|.=|+||||+.+.+.+ +++.. + ..-+|-. -+.+--...++..|.
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~--~L~~~~~~~~~~i~fn~w~~--~~~~~~~~~~~~~l~ 77 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKE--ELKEDNKEKYIFIYFNAWEY--DGEDDLWASFLEELF 77 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHH--HHhcccccceeeEEEccccC--CCcchHHHHHHHHHH
Confidence 445677778887653 6788999999999999999999988 44433 2 2233544 332333446666777
Q ss_pred HHhCC
Q 041194 161 KFLMP 165 (418)
Q Consensus 161 ~~l~~ 165 (418)
.++..
T Consensus 78 ~~l~~ 82 (325)
T PF07693_consen 78 DQLEK 82 (325)
T ss_pred HHHHH
Confidence 66654
No 426
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=0.17 Score=47.40 Aligned_cols=52 Identities=23% Similarity=0.219 Sum_probs=38.8
Q ss_pred CCcccchhhHHHHHHHHhcC-----------CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCc
Q 041194 83 RDTVGLDDRMEKLLDLLIEG-----------PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF 136 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F 136 (418)
+++-|-.+.+++|.+.+... =+..+=|..+|++|.|||-+|++|.| +....|
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 45556777788877765432 14567788999999999999999999 655444
No 427
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.84 E-value=0.44 Score=47.77 Aligned_cols=71 Identities=17% Similarity=0.129 Sum_probs=44.1
Q ss_pred HHHHHHHHhcC-------CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCC--CCHHHHHHHHHHH
Q 041194 92 MEKLLDLLIEG-------PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNE--YDADQILDIVIKF 162 (418)
Q Consensus 92 ~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~--~~~~~ll~~il~~ 162 (418)
.++|+++|-.. ...+.||-.+|.-|.||||.|-.+.+ .++. ....+-+. .... +..-+-++.+..+
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~--~lkk-~~~kvllV--aaD~~RpAA~eQL~~La~q 153 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAK--YLKK-KGKKVLLV--AADTYRPAAIEQLKQLAEQ 153 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHH--HHHH-cCCceEEE--ecccCChHHHHHHHHHHHH
Confidence 35666666532 13578999999999999999888877 3333 32223222 2222 3344567777777
Q ss_pred hCCCC
Q 041194 163 LMPSS 167 (418)
Q Consensus 163 l~~~~ 167 (418)
++.+.
T Consensus 154 ~~v~~ 158 (451)
T COG0541 154 VGVPF 158 (451)
T ss_pred cCCce
Confidence 77643
No 428
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.83 E-value=0.071 Score=51.93 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=19.6
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+++...|.||+||||+|-...-
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~ 24 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV 24 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH
Confidence 57899999999999999887543
No 429
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=93.82 E-value=0.56 Score=49.56 Aligned_cols=110 Identities=15% Similarity=0.087 Sum_probs=77.1
Q ss_pred CCCCcccchhhHHHHHHHHhcC---CCCceEEEEECCCCCchHHHHHHHHhcC------CCCCCcceeeeeecCCCCCCC
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEG---PPQRSMVAILDSIGLDKTAFATEAYNSS------YVKHYFDCHAWITEPYSNEYD 151 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~d~------~~~~~F~~~~wv~~~vs~~~~ 151 (418)
.+..+-+||.+..+|...+..- ...-..+-|.|-+|+|||..+..|.+.- .-...|+. +.|+ .-.-..
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veIN--gm~l~~ 470 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEIN--GLRLAS 470 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEc--ceeecC
Confidence 4556778999999999988652 2345589999999999999999998831 11234532 3444 334456
Q ss_pred HHHHHHHHHHHhCCCCCccccccCCHHHHHHHHHHHhc-----cCcEEEEEecc
Q 041194 152 ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM-----TKRYLIVIDDF 200 (418)
Q Consensus 152 ~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~-----~kr~LlVLDDv 200 (418)
+.++...|...+.+..- ......+.|..++. .+..+|++|.+
T Consensus 471 ~~~~Y~~I~~~lsg~~~-------~~~~al~~L~~~f~~~k~~~~~~VvLiDEl 517 (767)
T KOG1514|consen 471 PREIYEKIWEALSGERV-------TWDAALEALNFRFTVPKPKRSTTVVLIDEL 517 (767)
T ss_pred HHHHHHHHHHhcccCcc-------cHHHHHHHHHHhhccCCCCCCCEEEEeccH
Confidence 88999999999987542 34455555666654 35688889987
No 430
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.81 E-value=0.051 Score=49.76 Aligned_cols=35 Identities=14% Similarity=0.076 Sum_probs=26.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
-.+++|+|..|+|||||++.+..- .. ...+.+++.
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl--~~-~~~G~i~~~ 64 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGL--DR-PTSGEVRVD 64 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC--cC-CCceeEEEC
Confidence 468999999999999999999873 22 234555554
No 431
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=93.81 E-value=0.05 Score=47.28 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=19.7
Q ss_pred EEEEECCCCCchHHHHHHHHhc
Q 041194 108 MVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-|+|+|.+|+|||||++.+.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999875
No 432
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=93.81 E-value=0.066 Score=52.50 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=39.2
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...++|....+.++.+.+..-.....-|.|+|..|+||+++|+.++.
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 34689999999999998876433456788999999999999999987
No 433
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.80 E-value=0.052 Score=49.42 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|..|+|||||++.+..
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999987
No 434
>PRK13695 putative NTPase; Provisional
Probab=93.80 E-value=0.051 Score=47.95 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.8
Q ss_pred EEEEECCCCCchHHHHHHHHhc
Q 041194 108 MVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 435
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.78 E-value=0.12 Score=50.42 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=40.5
Q ss_pred CCCCcccchhhHHH---HHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCC
Q 041194 81 KSRDTVGLDDRMEK---LLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVK 133 (418)
Q Consensus 81 ~~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~ 133 (418)
....+||-.+..+. +++++..+.-.-+.|.|+|++|.|||+||..+.+ .+.
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~--eLG 90 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAR--ELG 90 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHH--HhC
Confidence 45678897665544 7777777755678999999999999999999999 554
No 436
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.77 E-value=0.06 Score=49.18 Aligned_cols=21 Identities=19% Similarity=0.143 Sum_probs=15.7
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+..|+|++|.||||++..+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~ 39 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIA 39 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHH
Confidence 789999999999986666555
No 437
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=0.077 Score=52.18 Aligned_cols=79 Identities=13% Similarity=0.102 Sum_probs=48.7
Q ss_pred hcccccc--cccccccccccCCCchh-hHhHhhhhcc--CCCCceechhHHHHHhHhcCCCCcC--------hHHHHHHH
Q 041194 238 ENIGEAV--QIPLVLRYFEYCMSPFC-LKLCFLYLSV--FPAHLEISTRQLYQLWIAEGFILDN--------SEATTESY 304 (418)
Q Consensus 238 ~~~~~~~--~i~~~L~~~sy~~L~~~-lk~cfl~~s~--Fp~~~~i~~~~Li~~Wiaeg~i~~~--------~e~~a~~~ 304 (418)
.+..|++ .++..|.+--|--||+. .+.|++...+ -|.+-.+.-+.|... .|||-... .-..-+++
T Consensus 359 TN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~--~eGySGaDI~nvCreAsm~~mRR~ 436 (491)
T KOG0738|consen 359 TNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAER--SEGYSGADITNVCREASMMAMRRK 436 (491)
T ss_pred cCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHH--hcCCChHHHHHHHHHHHHHHHHHH
Confidence 3456776 34444435567789974 8889888765 466666777777764 58887765 11222345
Q ss_pred HHHHHhcccccccc
Q 041194 305 LEQLIKEGFAEAKK 318 (418)
Q Consensus 305 l~~Lv~rsll~~~~ 318 (418)
+.-|..+...+...
T Consensus 437 i~g~~~~ei~~lak 450 (491)
T KOG0738|consen 437 IAGLTPREIRQLAK 450 (491)
T ss_pred HhcCCcHHhhhhhh
Confidence 55555666665544
No 438
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=93.77 E-value=0.06 Score=45.94 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..+|+++|..|+|||||+..+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998763
No 439
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=93.76 E-value=0.051 Score=51.77 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.2
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
++|+|+|-||+||||+|..+..
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~ 24 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAA 24 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHH
Confidence 6899999999999998886655
No 440
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=93.76 E-value=0.049 Score=51.88 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=18.9
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
++|+|+|-||+||||+|..+..
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~ 23 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVA 23 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHH
Confidence 5899999999999998877655
No 441
>PF13245 AAA_19: Part of AAA domain
Probab=93.75 E-value=0.067 Score=40.49 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=17.4
Q ss_pred ceEEEEECCCCCchHH-HHHHHHh
Q 041194 106 RSMVAILDSIGLDKTA-FATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTt-LA~~v~~ 128 (418)
.+++.|.|.+|.|||+ ++..+..
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 4678889999999995 5555544
No 442
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.72 E-value=0.056 Score=50.15 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.9
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
--+++|+|++|+|||||-+.+.-
T Consensus 29 GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999976
No 443
>PRK13768 GTPase; Provisional
Probab=93.71 E-value=0.058 Score=50.88 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..++.|.|.+|+||||++..+..
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~ 24 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSD 24 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHH
Confidence 36889999999999999887776
No 444
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=93.70 E-value=0.14 Score=49.54 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=66.2
Q ss_pred CCCCcccchhhHHHHHHHHhcC--CCCceEEEEECCCCCchHHHHHHHHhc-CCCCCCcceeeeeecCCCCCC-CHHHHH
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEG--PPQRSMVAILDSIGLDKTAFATEAYNS-SYVKHYFDCHAWITEPYSNEY-DADQIL 156 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~d-~~~~~~F~~~~wv~~~vs~~~-~~~~ll 156 (418)
+...++|..++..++-+||... .+.-.-+.|+|+.|.|||+|...+..| .++.++| .-|. ..... ..+-.+
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~--Lng~~~~dk~al 96 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVR--LNGELQTDKIAL 96 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEE--ECccchhhHHHH
Confidence 4567899999999999998653 122445779999999999998888775 2344444 2233 32222 223356
Q ss_pred HHHHHHhCCCCCccccccCCHHHHHHHHHHHhcc------CcEEEEEecc
Q 041194 157 DIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMT------KRYLIVIDDF 200 (418)
Q Consensus 157 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~------kr~LlVLDDv 200 (418)
+.|.+|+............+..+....+-+.|+. -++..|+|..
T Consensus 97 ~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEf 146 (408)
T KOG2228|consen 97 KGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEF 146 (408)
T ss_pred HHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehh
Confidence 6666665432211111223333334444444432 3577777765
No 445
>PLN02165 adenylate isopentenyltransferase
Probab=93.70 E-value=0.058 Score=52.59 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=22.2
Q ss_pred CceEEEEECCCCCchHHHHHHHHhc
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.-.+|+|+|+.|+||||||..+...
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~ 66 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATR 66 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH
Confidence 3559999999999999999999883
No 446
>PRK09165 replicative DNA helicase; Provisional
Probab=93.69 E-value=0.67 Score=48.20 Aligned_cols=56 Identities=16% Similarity=0.147 Sum_probs=35.1
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCC------------c-ceeeeeecCCCCCCCHHHHHHHHHHHhC
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHY------------F-DCHAWITEPYSNEYDADQILDIVIKFLM 164 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~------------F-~~~~wv~~~vs~~~~~~~ll~~il~~l~ 164 (418)
.-.++.|.|.+|+||||+|..+..+...... - ..+++ +|-..+..++...++....
T Consensus 216 ~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~----fSlEMs~~ql~~R~la~~s 284 (497)
T PRK09165 216 PSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGF----FSLEMSAEQLATRILSEQS 284 (497)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEE----EeCcCCHHHHHHHHHHHhc
Confidence 3468999999999999999887653211100 0 12223 3455667777777766543
No 447
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.68 E-value=0.27 Score=52.82 Aligned_cols=46 Identities=22% Similarity=0.215 Sum_probs=32.0
Q ss_pred CCcccchhhHHHHHHHHhc---C-------CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 83 RDTVGLDDRMEKLLDLLIE---G-------PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.++.|.+..++++.+.+.. . ..-.+-|.++|++|+|||++|+.+.+
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~ 207 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 207 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3556766666666554432 1 11234489999999999999999998
No 448
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=93.68 E-value=0.15 Score=51.18 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=34.4
Q ss_pred chhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHH-HHHHhc
Q 041194 88 LDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFA-TEAYNS 129 (418)
Q Consensus 88 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~d 129 (418)
|.+..++|..||.+.. -..|.|.|+-|+||+.|+ .++.++
T Consensus 1 R~e~~~~L~~wL~e~~--~TFIvV~GPrGSGK~elV~d~~L~~ 41 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP--NTFIVVQGPRGSGKRELVMDHVLKD 41 (431)
T ss_pred CchHHHHHHHHHhcCC--CeEEEEECCCCCCccHHHHHHHHhC
Confidence 5678899999998875 469999999999999999 777774
No 449
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=93.68 E-value=0.071 Score=45.59 Aligned_cols=21 Identities=14% Similarity=0.358 Sum_probs=19.1
Q ss_pred EEEECCCCCchHHHHHHHHhc
Q 041194 109 VAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~d 129 (418)
|+|+|.+|+|||||++.+.+.
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 688999999999999999874
No 450
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.67 E-value=0.1 Score=51.46 Aligned_cols=86 Identities=13% Similarity=0.152 Sum_probs=48.9
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccccccCCHHHHHHHHH
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILH 185 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 185 (418)
-..|.|.|..|+||||+.+.+.+ .+......+++.- ..+... ..... ..+-...+ ...+.......++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~ti---Edp~E~--~~~~~-~~~i~q~e----vg~~~~~~~~~l~ 189 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIITI---EDPIEY--VHRNK-RSLINQRE----VGLDTLSFANALR 189 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEEE---cCChhh--hccCc-cceEEccc----cCCCCcCHHHHHH
Confidence 46899999999999999999887 4554455555543 222111 00000 00000000 0111223456677
Q ss_pred HHhccCcEEEEEeccCCC
Q 041194 186 EYLMTKRYLIVIDDFEDG 203 (418)
Q Consensus 186 ~~L~~kr~LlVLDDvp~~ 203 (418)
..|+...=.|++|.+.+.
T Consensus 190 ~~lr~~pd~i~vgEird~ 207 (343)
T TIGR01420 190 AALREDPDVILIGEMRDL 207 (343)
T ss_pred HhhccCCCEEEEeCCCCH
Confidence 788888888899988443
No 451
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.66 E-value=0.056 Score=49.44 Aligned_cols=35 Identities=14% Similarity=0.096 Sum_probs=26.8
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
-.+++|+|..|+|||||++.+..- . ....+.+++.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl--~-~~~~G~i~~~ 63 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGI--E-KPTRGKIRFN 63 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--C-CCCceEEEEC
Confidence 468999999999999999999983 2 2234556554
No 452
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.66 E-value=0.057 Score=48.33 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|..|+|||||.+.+..
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999987
No 453
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.64 E-value=0.059 Score=49.01 Aligned_cols=35 Identities=11% Similarity=0.042 Sum_probs=27.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
-.|++|+|++|+|||||.+.+-.= ...=.+.+|+.
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~L---E~~~~G~I~i~ 62 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGL---EEPDSGSITVD 62 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC---cCCCCceEEEC
Confidence 459999999999999999988763 33334678876
No 454
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.63 E-value=0.072 Score=47.45 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=22.0
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...++.|.|.+|+||||+|+.+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~ 40 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEK 40 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 455
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.63 E-value=0.061 Score=47.72 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|..|.|||||++.+..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999987
No 456
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.62 E-value=0.11 Score=52.39 Aligned_cols=48 Identities=15% Similarity=0.129 Sum_probs=36.6
Q ss_pred CCCCcccchhhHHHHHHHHh-------c---CC--C----CceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLI-------E---GP--P----QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~-------~---~~--~----~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-...++|.++.++.+...+. . .. + ....+.++|++|+|||+||+.+..
T Consensus 75 L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 75 LDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred hcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 45668999999988876652 1 11 1 135789999999999999999997
No 457
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=93.59 E-value=0.058 Score=45.36 Aligned_cols=23 Identities=9% Similarity=0.221 Sum_probs=20.5
Q ss_pred EEEEECCCCCchHHHHHHHHhcC
Q 041194 108 MVAILDSIGLDKTAFATEAYNSS 130 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d~ 130 (418)
-|+++|.+|+|||||+..+....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998854
No 458
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=93.58 E-value=0.06 Score=50.95 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=20.8
Q ss_pred eEEEEECCCCCchHHHHHHHHhc
Q 041194 107 SMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
++|+|.|-||+||||+|..+...
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~ 25 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAA 25 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 68999999999999999998883
No 459
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=93.58 E-value=0.056 Score=47.17 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..-|+|+|.+|+|||||.+.+...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 456999999999999999999874
No 460
>PRK06321 replicative DNA helicase; Provisional
Probab=93.57 E-value=1.4 Score=45.51 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=37.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhC
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLM 164 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~ 164 (418)
-.++.|-|.+|+|||++|..++.+...+... .++|++ -..+..++...++....
T Consensus 226 G~LiiiaarPgmGKTafal~ia~~~a~~~g~-~v~~fS----LEMs~~ql~~Rlla~~s 279 (472)
T PRK06321 226 SNLMILAARPAMGKTALALNIAENFCFQNRL-PVGIFS----LEMTVDQLIHRIICSRS 279 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHhcCC-eEEEEe----ccCCHHHHHHHHHHhhc
Confidence 4588999999999999999998742212222 344544 45577788888776543
No 461
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.57 E-value=0.065 Score=48.96 Aligned_cols=34 Identities=9% Similarity=0.004 Sum_probs=26.2
Q ss_pred eEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 107 SMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
.+++|+|..|+|||||++.+..- . ....+.+++.
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~--~-~~~~G~i~~~ 57 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGL--E-KPDGGTIVLN 57 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCC--C-CCCCceEEEC
Confidence 89999999999999999999873 2 2234555554
No 462
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.56 E-value=0.1 Score=53.51 Aligned_cols=47 Identities=17% Similarity=0.064 Sum_probs=39.2
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHH
Confidence 44688999999999999997653 235678899999999999999877
No 463
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=93.56 E-value=0.18 Score=51.57 Aligned_cols=92 Identities=14% Similarity=0.225 Sum_probs=54.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCC---CCcceeeeeecCCCCCC-CHHHHHHHHHHHhCCCCCcc--ccccCC-H-
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVK---HYFDCHAWITEPYSNEY-DADQILDIVIKFLMPSSRLS--EIMDKN-Y- 177 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~---~~F~~~~wv~~~vs~~~-~~~~ll~~il~~l~~~~~~~--~~~~~~-~- 177 (418)
-.-++|.|-.|+|||||+..+.+..... ..| ..+++- +++.. .+.++++.+...=......- .+...+ .
T Consensus 143 GQR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~--iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~ 219 (460)
T PRK04196 143 GQKLPIFSGSGLPHNELAAQIARQAKVLGEEENF-AVVFAA--MGITFEEANFFMEDFEETGALERSVVFLNLADDPAIE 219 (460)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHhhhhccCCCce-EEEEEE--eccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHH
Confidence 3467889999999999999998854332 122 345666 66543 55667777665321111000 001111 1
Q ss_pred ----HHHHHHHHHHhc---cCcEEEEEecc
Q 041194 178 ----EMKKIILHEYLM---TKRYLIVIDDF 200 (418)
Q Consensus 178 ----~~l~~~l~~~L~---~kr~LlVLDDv 200 (418)
-...-.+.++++ ++++||++||+
T Consensus 220 R~~a~~~a~tiAEyfr~d~G~~VLli~Dsl 249 (460)
T PRK04196 220 RILTPRMALTAAEYLAFEKGMHVLVILTDM 249 (460)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEEcCh
Confidence 112334667765 49999999999
No 464
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.54 E-value=0.065 Score=50.35 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=27.1
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
.-.+++|+|+.|+|||||.+.++.- .+ -=.+.+++.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~--l~-p~~G~V~l~ 62 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGL--LK-PKSGEVLLD 62 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc--CC-CCCCEEEEC
Confidence 3579999999999999999999982 22 223456665
No 465
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=93.54 E-value=0.13 Score=51.26 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=41.0
Q ss_pred ccCCCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 78 SSSKSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 78 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.|....+++|-++.++.|.+.+..+. -...+.++|+.|+||||+|..+.+
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~ 63 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMAR 63 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 34556789999999999999988763 344688999999999999988776
No 466
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.53 E-value=0.052 Score=51.79 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=19.7
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+|+|.|..|+|||||++.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ 21 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTS 21 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 467
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.52 E-value=0.098 Score=48.01 Aligned_cols=35 Identities=14% Similarity=0.077 Sum_probs=27.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
-.+++|+|..|+|||||.+.+... . ....+.+|+.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~--~-~~~~G~i~~~ 60 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTL--L-KPTSGRATVA 60 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--C-CCCceEEEEC
Confidence 468999999999999999999873 2 2345566654
No 468
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=93.47 E-value=0.063 Score=46.22 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=19.2
Q ss_pred EEEECCCCCchHHHHHHHHhc
Q 041194 109 VAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~d 129 (418)
|.|+|.+|+|||||++.+.+.
T Consensus 3 i~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999874
No 469
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.45 E-value=0.063 Score=49.81 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|..|+|||||++.+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G 48 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVG 48 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999987
No 470
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.45 E-value=0.065 Score=48.76 Aligned_cols=35 Identities=11% Similarity=0.041 Sum_probs=27.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
-.+++|+|..|+|||||++.+... . ....+.+|+.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~--~-~~~~G~i~~~ 60 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGI--I-LPDSGEVLFD 60 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC--C-CCCceEEEEC
Confidence 468999999999999999999973 2 2235566665
No 471
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.44 E-value=0.057 Score=47.09 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+|++|+|..|+|||||...+..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~ 24 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVR 24 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHH
Confidence 47999999999999999999977
No 472
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=93.44 E-value=0.1 Score=52.15 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=25.6
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCCcc
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHYFD 137 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~ 137 (418)
+..+|+|+|..|+|||||+..+.. +++..+.
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~--~l~~~~~ 34 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVR--RLSERFS 34 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHH--HHhhCce
Confidence 457999999999999999999998 5554443
No 473
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=93.43 E-value=0.82 Score=42.70 Aligned_cols=101 Identities=15% Similarity=0.217 Sum_probs=58.6
Q ss_pred HHHHHHHHhcC-CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCC-CCCCCHHHHHHHHHHHhCCCCCc
Q 041194 92 MEKLLDLLIEG-PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPY-SNEYDADQILDIVIKFLMPSSRL 169 (418)
Q Consensus 92 ~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~v-s~~~~~~~ll~~il~~l~~~~~~ 169 (418)
.++.+..+... ..+-.++.++|.-|.|||++.+.+.. ...+ +.++-+. + ....+...+...|+.++..+...
T Consensus 36 h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~--s~~~--d~~~~v~--i~~~~~s~~~~~~ai~~~l~~~p~~ 109 (269)
T COG3267 36 HNEALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLA--SLNE--DQVAVVV--IDKPTLSDATLLEAIVADLESQPKV 109 (269)
T ss_pred hhHHHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHH--hcCC--CceEEEE--ecCcchhHHHHHHHHHHHhccCccc
Confidence 33444444332 23457999999999999999994443 1111 1111133 3 44567778999999998873210
Q ss_pred cccccCCHHHHHHHHHHHh-ccCc-EEEEEecc
Q 041194 170 SEIMDKNYEMKKIILHEYL-MTKR-YLIVIDDF 200 (418)
Q Consensus 170 ~~~~~~~~~~l~~~l~~~L-~~kr-~LlVLDDv 200 (418)
......+.....|.+.. ++|| ..++.||.
T Consensus 110 --~~~~~~e~~~~~L~al~~~g~r~v~l~vdEa 140 (269)
T COG3267 110 --NVNAVLEQIDRELAALVKKGKRPVVLMVDEA 140 (269)
T ss_pred --hhHHHHHHHHHHHHHHHHhCCCCeEEeehhH
Confidence 01112333344444444 4677 89999986
No 474
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=93.41 E-value=0.59 Score=47.26 Aligned_cols=111 Identities=15% Similarity=0.028 Sum_probs=63.1
Q ss_pred cccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcce-eeeeecCCCCCCCHHHHHHHHHHHh
Q 041194 85 TVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDC-HAWITEPYSNEYDADQILDIVIKFL 163 (418)
Q Consensus 85 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~-~~wv~~~vs~~~~~~~ll~~il~~l 163 (418)
+.|..-....|-+.... -..-..|.+-|-+|+||||+|-.+..+ +....+. ++++ |-..+..++...++...
T Consensus 176 ~~Gi~tgf~~LD~~t~G-~~~~dLii~AaRP~mGKTafalnia~n--~a~~~~~~v~iF----SLEM~~eql~~R~Ls~~ 248 (435)
T COG0305 176 LIGVPTGFTDLDEITSG-FRPGDLIIVAARPGMGKTALALNIALN--AAADGRKPVAIF----SLEMSEEQLVMRLLSSE 248 (435)
T ss_pred CcccccCchhhHHHhcC-CccCCEEEEccCCCCChHHHHHHHHHH--HHHhcCCCeEEE----EccCCHHHHHHHhhccc
Confidence 34444333444333322 223458899999999999999988874 3223332 3443 46678888988888877
Q ss_pred CCCCCc-cccccCCHHHH--HHHHHHHhccCcEEEEEeccCCCc
Q 041194 164 MPSSRL-SEIMDKNYEMK--KIILHEYLMTKRYLIVIDDFEDGE 204 (418)
Q Consensus 164 ~~~~~~-~~~~~~~~~~l--~~~l~~~L~~kr~LlVLDDvp~~~ 204 (418)
..-... ......+.++. ...-...++... |.+||.|+-.
T Consensus 249 s~v~~~kirtg~l~~~d~~~l~~a~~~l~~~~--i~IdD~~~~s 290 (435)
T COG0305 249 SGIESSKLRTGRLSDDEWERLIKAASELSEAP--IFIDDTPGLT 290 (435)
T ss_pred cccchhccccccccHHHHHHHHHHHHHHhhCC--eeecCCCcCC
Confidence 652210 00122233322 223334455566 8889986543
No 475
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=93.41 E-value=0.064 Score=46.09 Aligned_cols=21 Identities=10% Similarity=0.352 Sum_probs=19.4
Q ss_pred EEEECCCCCchHHHHHHHHhc
Q 041194 109 VAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~d 129 (418)
|+++|.+|+|||||++.+.+.
T Consensus 3 v~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999874
No 476
>PRK02496 adk adenylate kinase; Provisional
Probab=93.40 E-value=0.074 Score=47.35 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=19.4
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-+.|.|++|+||||+|+.+..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 477
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=93.40 E-value=0.13 Score=46.54 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=20.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-++..|.|.+|+||||++..+..
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~ 40 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAE 40 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHH
T ss_pred CeEEEEEECCCCCHHHHHHHHHH
Confidence 46888999999999999998876
No 478
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=0.18 Score=46.78 Aligned_cols=47 Identities=21% Similarity=0.169 Sum_probs=36.7
Q ss_pred CCcccchhhHHHHHHHHhcC-----------CCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 83 RDTVGLDDRMEKLLDLLIEG-----------PPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.++-|.+-.++++.+.+.-. =+..+=+.++|++|.|||-||+.|.|+
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 45667888888888775421 145677889999999999999999994
No 479
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.39 E-value=0.067 Score=48.81 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=26.8
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
-.+++|+|..|+|||||++.+..- . ....+.+++.
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl--~-~~~~G~i~~~ 62 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGA--L-TPSRGQVRIA 62 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--C-CCCCceEEEC
Confidence 458999999999999999999873 2 2345566654
No 480
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.38 E-value=0.069 Score=48.09 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=21.7
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999884
No 481
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.38 E-value=0.066 Score=49.91 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=26.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
-.+++|+|..|+|||||++.+..- . ....+.+++.
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl--~-~~~~G~i~~~ 62 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRL--V-EPSSGSILLE 62 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--c-CCCccEEEEC
Confidence 468999999999999999999873 2 2234555554
No 482
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.38 E-value=0.046 Score=51.04 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=17.3
Q ss_pred EECCCCCchHHHHHHHHhcC
Q 041194 111 ILDSIGLDKTAFATEAYNSS 130 (418)
Q Consensus 111 I~G~gGiGKTtLA~~v~~d~ 130 (418)
|+|++|+||||+++.+.+.-
T Consensus 1 ViGpaGSGKTT~~~~~~~~~ 20 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL 20 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999998853
No 483
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=93.37 E-value=0.085 Score=44.99 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=19.1
Q ss_pred EEEECCCCCchHHHHHHHHhc
Q 041194 109 VAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~d 129 (418)
|+|+|.+|+|||||...+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999764
No 484
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.37 E-value=0.068 Score=48.76 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|..|+|||||++.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999987
No 485
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.37 E-value=0.088 Score=51.66 Aligned_cols=46 Identities=13% Similarity=0.101 Sum_probs=35.2
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+-+.++|.++.++.+.-.+.... ..-+.+.|.+|+||||+|+.+.+
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~--~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPG--IGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccC--CCcEEEEcCCCCCHHHHHHHHHH
Confidence 34578899998888775554322 23488999999999999999976
No 486
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.36 E-value=0.068 Score=49.07 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=21.7
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-.+++|+|..|+|||||++.+..-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999873
No 487
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.36 E-value=0.067 Score=49.78 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|..|+|||||++.+..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNG 49 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999987
No 488
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=93.36 E-value=0.08 Score=44.83 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=19.4
Q ss_pred EEEECCCCCchHHHHHHHHhc
Q 041194 109 VAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~d 129 (418)
|+|+|..|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999875
No 489
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.35 E-value=0.069 Score=48.98 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=26.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
-.+++|+|..|+|||||++.+..- . ....+.+++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl--~-~~~~G~i~~~ 62 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGE--L-RPTSGTAYIN 62 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC--C-CCCCcEEEEC
Confidence 458999999999999999999983 2 2234455543
No 490
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=93.34 E-value=0.06 Score=48.28 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEECCCCCchHHHHHHHHhc
Q 041194 108 MVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d 129 (418)
+|+|-|+.|+||||+++.+.+.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~ 22 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEH 22 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999883
No 491
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.33 E-value=0.069 Score=47.48 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|..|+|||||.+.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 45999999999999999999987
No 492
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=93.32 E-value=0.23 Score=50.95 Aligned_cols=92 Identities=14% Similarity=0.155 Sum_probs=54.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCC-CHHHHHHHHHHHhCCCC-------CccccccCCH
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEY-DADQILDIVIKFLMPSS-------RLSEIMDKNY 177 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~-~~~~ll~~il~~l~~~~-------~~~~~~~~~~ 177 (418)
-.-++|.|-.|+|||||+..+.... .+.+=+..+++- +++.. .+.++...++..-.... ..--....+.
T Consensus 161 GQR~gIfgg~GvGKs~L~~~~~~~~-~~~~~dv~V~~l--IGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~ 237 (494)
T CHL00060 161 GGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGG--VGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNE 237 (494)
T ss_pred CCEEeeecCCCCChhHHHHHHHHHH-HHhcCCeEEEEE--eccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCC
Confidence 4568999999999999999887641 111115677777 76654 45677776665211100 0000011111
Q ss_pred --------HHHHHHHHHHhc--cC-cEEEEEecc
Q 041194 178 --------EMKKIILHEYLM--TK-RYLIVIDDF 200 (418)
Q Consensus 178 --------~~l~~~l~~~L~--~k-r~LlVLDDv 200 (418)
....-.+.++++ ++ .+||++||+
T Consensus 238 p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~Dsl 271 (494)
T CHL00060 238 PPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNI 271 (494)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccc
Confidence 122344777774 34 999999999
No 493
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=93.32 E-value=0.12 Score=49.45 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=47.1
Q ss_pred CCCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeee
Q 041194 80 SKSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAW 141 (418)
Q Consensus 80 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~w 141 (418)
..-.+++|-+..++-|.+.+... .......+|++|.|||+-|..+...---.+.|.+++-
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~~--~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl 92 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLRR--ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVL 92 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhhc--CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchh
Confidence 34568899999999999999884 3788899999999999998888773222456776653
No 494
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=93.32 E-value=0.066 Score=50.76 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=17.5
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+|++.|-||+||||+|..+..
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~ 22 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSV 22 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHH
Confidence 688889999999997776554
No 495
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.31 E-value=0.13 Score=56.11 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=38.2
Q ss_pred CCCcccchhhHHHHHHHHhcC-------CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIEG-------PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...++|-++.++.|.+.+... ......+.++|++|+|||+||+.+..
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~ 510 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999988631 22345788999999999999999988
No 496
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.30 E-value=0.072 Score=47.26 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=29.0
Q ss_pred EEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHH
Q 041194 108 MVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDI 158 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~ 158 (418)
++.|.|.+|+|||+||.++..... +.. ...+|++ .. .+..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~-~~g-~~v~~~s--~e--~~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL-ARG-EPGLYVT--LE--ESPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH-HCC-CcEEEEE--CC--CCHHHHHHH
Confidence 367899999999999998866321 221 3356777 43 345555444
No 497
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.29 E-value=0.062 Score=52.14 Aligned_cols=22 Identities=18% Similarity=0.087 Sum_probs=18.7
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+++.+.|-||+||||+|-...-
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~ 23 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALAL 23 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHH
Confidence 6889999999999999866544
No 498
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.29 E-value=0.072 Score=49.14 Aligned_cols=23 Identities=13% Similarity=0.211 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|..|+|||||++.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G 48 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNR 48 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999987
No 499
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=93.27 E-value=0.076 Score=45.96 Aligned_cols=21 Identities=10% Similarity=0.208 Sum_probs=18.7
Q ss_pred EEEECCCCCchHHHHHHHHhc
Q 041194 109 VAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~d 129 (418)
|+++|.+|+|||||+..+.++
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988764
No 500
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.27 E-value=0.066 Score=48.83 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|..|+|||||++.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G 47 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILG 47 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcC
Confidence 45899999999999999999987
Done!