Query 041194
Match_columns 418
No_of_seqs 323 out of 2591
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 07:29:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041194.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041194hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.6E-42 9E-47 359.3 18.3 251 86-347 131-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-33 4.9E-38 318.1 19.2 255 79-346 120-453 (1249)
3 1vt4_I APAF-1 related killer D 100.0 1.1E-32 3.7E-37 295.4 10.5 241 84-339 129-437 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 7.7E-30 2.6E-34 267.5 15.2 250 80-343 121-450 (591)
5 1w5s_A Origin recognition comp 99.0 1.6E-09 5.6E-14 107.4 10.0 113 81-200 20-147 (412)
6 2v1u_A Cell division control p 98.8 8.5E-09 2.9E-13 101.1 10.4 113 81-200 17-139 (387)
7 2qby_B CDC6 homolog 3, cell di 98.8 6.9E-09 2.4E-13 101.9 9.1 112 82-200 19-142 (384)
8 1fnn_A CDC6P, cell division co 98.8 4.2E-08 1.4E-12 96.3 13.8 112 82-200 16-134 (389)
9 2qen_A Walker-type ATPase; unk 98.8 1.3E-08 4.5E-13 98.3 9.2 107 80-200 9-137 (350)
10 2qby_A CDC6 homolog 1, cell di 98.7 7.2E-09 2.5E-13 101.4 5.5 113 81-200 18-137 (386)
11 2fna_A Conserved hypothetical 98.5 1.7E-07 5.9E-12 90.5 8.7 107 80-200 10-146 (357)
12 3te6_A Regulatory protein SIR3 98.4 8.8E-07 3E-11 84.9 9.4 110 85-200 22-141 (318)
13 1jbk_A CLPB protein; beta barr 98.3 1.9E-06 6.6E-11 75.0 8.8 47 81-129 20-66 (195)
14 2chg_A Replication factor C sm 98.2 2.3E-06 7.8E-11 76.4 7.9 46 81-128 15-60 (226)
15 1njg_A DNA polymerase III subu 98.1 5.1E-06 1.7E-10 75.0 8.2 47 82-129 22-68 (250)
16 2p65_A Hypothetical protein PF 98.1 6.6E-06 2.2E-10 71.4 7.6 47 81-129 20-66 (187)
17 3qfl_A MLA10; coiled-coil, (CC 98.0 4.3E-06 1.5E-10 67.8 4.2 44 1-44 61-110 (115)
18 1sxj_B Activator 1 37 kDa subu 97.9 1.4E-05 4.9E-10 76.0 7.2 45 82-128 20-64 (323)
19 2w58_A DNAI, primosome compone 97.8 6E-05 2.1E-09 66.8 8.0 59 83-143 25-89 (202)
20 3h4m_A Proteasome-activating n 97.7 4.1E-05 1.4E-09 71.7 6.7 49 80-128 14-73 (285)
21 1iqp_A RFCS; clamp loader, ext 97.6 7.7E-05 2.6E-09 70.9 6.5 46 81-128 23-68 (327)
22 2qz4_A Paraplegin; AAA+, SPG7, 97.6 9.6E-05 3.3E-09 68.1 6.9 47 82-128 5-61 (262)
23 3uk6_A RUVB-like 2; hexameric 97.5 0.00041 1.4E-08 67.3 10.7 48 82-129 43-93 (368)
24 3cf0_A Transitional endoplasmi 97.5 0.00029 9.8E-09 66.8 9.2 47 82-128 14-71 (301)
25 3eie_A Vacuolar protein sortin 97.5 0.00022 7.5E-09 68.3 8.3 49 80-128 15-73 (322)
26 1xwi_A SKD1 protein; VPS4B, AA 97.5 0.00046 1.6E-08 66.1 9.9 48 81-128 10-67 (322)
27 1sxj_A Activator 1 95 kDa subu 97.4 0.00027 9.3E-09 72.3 8.1 49 81-129 37-100 (516)
28 3b9p_A CG5977-PA, isoform A; A 97.4 0.00027 9.2E-09 66.5 7.4 48 81-128 19-76 (297)
29 3u61_B DNA polymerase accessor 97.4 0.00062 2.1E-08 64.9 9.7 48 80-128 23-70 (324)
30 1lv7_A FTSH; alpha/beta domain 97.4 0.00046 1.6E-08 63.6 8.4 48 81-128 10-67 (257)
31 1jr3_A DNA polymerase III subu 97.4 0.00046 1.6E-08 66.9 8.7 47 82-129 15-61 (373)
32 1hqc_A RUVB; extended AAA-ATPa 97.3 0.00022 7.5E-09 67.9 6.2 48 81-128 10-60 (324)
33 3d8b_A Fidgetin-like protein 1 97.3 0.00024 8.1E-09 69.1 6.5 47 82-128 83-139 (357)
34 3ec2_A DNA replication protein 97.3 0.00045 1.6E-08 59.9 7.1 41 88-128 19-60 (180)
35 3pvs_A Replication-associated 97.3 0.00033 1.1E-08 70.3 6.9 47 80-128 23-72 (447)
36 3n70_A Transport activator; si 97.3 0.00017 5.9E-09 60.5 4.0 46 84-129 2-47 (145)
37 3syl_A Protein CBBX; photosynt 97.3 0.0003 1E-08 66.5 6.0 45 84-128 32-89 (309)
38 2qp9_X Vacuolar protein sortin 97.2 0.00066 2.2E-08 66.0 8.4 48 81-128 49-106 (355)
39 2z4s_A Chromosomal replication 97.2 0.00036 1.2E-08 69.9 6.7 93 84-200 106-203 (440)
40 3vfd_A Spastin; ATPase, microt 97.2 0.00064 2.2E-08 66.8 7.7 48 81-128 113-170 (389)
41 1l8q_A Chromosomal replication 97.1 0.0009 3.1E-08 63.8 7.6 37 92-128 23-59 (324)
42 1d2n_A N-ethylmaleimide-sensit 97.1 0.0013 4.4E-08 61.1 8.5 48 82-129 32-87 (272)
43 1qvr_A CLPB protein; coiled co 97.1 0.00086 3E-08 72.8 8.0 46 81-128 168-213 (854)
44 2cvh_A DNA repair and recombin 97.1 0.0021 7.1E-08 57.2 9.3 88 105-200 19-114 (220)
45 3hu3_A Transitional endoplasmi 97.0 0.00097 3.3E-08 67.6 7.5 92 83-200 204-306 (489)
46 2vhj_A Ntpase P4, P4; non- hyd 97.0 0.00051 1.7E-08 65.5 4.9 67 106-200 123-191 (331)
47 1r6b_X CLPA protein; AAA+, N-t 97.0 0.00085 2.9E-08 71.8 7.0 46 81-128 184-229 (758)
48 3pfi_A Holliday junction ATP-d 97.0 0.00038 1.3E-08 66.7 3.9 48 81-128 27-77 (338)
49 1ypw_A Transitional endoplasmi 97.0 0.0013 4.6E-08 70.7 8.4 51 83-135 204-265 (806)
50 4b4t_J 26S protease regulatory 97.0 0.0011 3.9E-08 65.0 7.1 52 83-136 148-210 (405)
51 4b4t_M 26S protease regulatory 97.0 0.0013 4.6E-08 65.3 7.5 52 83-136 181-243 (434)
52 2zan_A Vacuolar protein sortin 96.9 0.00099 3.4E-08 66.8 6.5 48 81-128 132-189 (444)
53 4b4t_K 26S protease regulatory 96.9 0.0016 5.5E-08 64.7 7.8 52 83-136 172-234 (428)
54 3pxg_A Negative regulator of g 96.9 0.00082 2.8E-08 67.8 5.6 45 82-128 179-223 (468)
55 3cf2_A TER ATPase, transitiona 96.9 0.0023 7.8E-08 68.4 9.1 92 83-200 204-306 (806)
56 4b4t_L 26S protease subunit RP 96.9 0.0019 6.4E-08 64.3 7.9 52 83-136 181-243 (437)
57 3co5_A Putative two-component 96.9 0.00022 7.5E-09 59.8 0.8 46 83-128 4-49 (143)
58 4b4t_H 26S protease regulatory 96.8 0.0017 5.9E-08 64.7 7.3 52 83-136 209-271 (467)
59 1sxj_D Activator 1 41 kDa subu 96.8 0.00098 3.4E-08 64.0 5.1 46 81-128 35-80 (353)
60 2ce7_A Cell division protein F 96.7 0.0028 9.6E-08 63.9 7.9 48 81-128 14-71 (476)
61 2qgz_A Helicase loader, putati 96.7 0.0014 4.8E-08 62.3 5.0 40 89-128 134-174 (308)
62 3hr8_A Protein RECA; alpha and 96.7 0.0038 1.3E-07 60.5 8.1 88 104-200 59-148 (356)
63 3c8u_A Fructokinase; YP_612366 96.6 0.0016 5.4E-08 58.0 4.8 38 91-128 7-44 (208)
64 1n0w_A DNA repair protein RAD5 96.6 0.012 4.3E-07 52.9 10.6 93 105-200 23-128 (243)
65 3bos_A Putative DNA replicatio 96.6 0.0017 6E-08 58.3 4.8 58 82-143 27-87 (242)
66 3t15_A Ribulose bisphosphate c 96.6 0.0017 5.7E-08 61.3 4.9 25 104-128 34-58 (293)
67 2bjv_A PSP operon transcriptio 96.6 0.0013 4.3E-08 60.8 4.0 47 83-129 6-52 (265)
68 2z43_A DNA repair and recombin 96.5 0.011 3.8E-07 56.4 10.4 93 105-200 106-212 (324)
69 1rz3_A Hypothetical protein rb 96.5 0.0025 8.5E-08 56.4 5.4 41 88-128 3-44 (201)
70 4b4t_I 26S protease regulatory 96.5 0.0039 1.3E-07 61.6 7.1 52 83-136 182-244 (437)
71 1ofh_A ATP-dependent HSL prote 96.5 0.0013 4.6E-08 61.7 3.7 46 83-128 15-72 (310)
72 2chq_A Replication factor C sm 96.5 0.0014 4.7E-08 61.9 3.8 45 82-128 16-60 (319)
73 1in4_A RUVB, holliday junction 96.5 0.0015 5.1E-08 62.8 4.0 47 82-128 24-73 (334)
74 1v5w_A DMC1, meiotic recombina 96.5 0.011 3.8E-07 56.9 10.0 94 104-200 120-228 (343)
75 1iy2_A ATP-dependent metallopr 96.5 0.0055 1.9E-07 57.0 7.4 50 80-129 37-96 (278)
76 1u94_A RECA protein, recombina 96.5 0.0058 2E-07 59.3 7.8 87 105-200 62-150 (356)
77 3pxi_A Negative regulator of g 96.4 0.0025 8.6E-08 68.2 5.6 45 82-128 179-223 (758)
78 1xp8_A RECA protein, recombina 96.4 0.0072 2.5E-07 58.8 8.1 87 105-200 73-161 (366)
79 2i1q_A DNA repair and recombin 96.4 0.016 5.4E-07 55.2 10.3 93 105-200 97-213 (322)
80 1sxj_E Activator 1 40 kDa subu 96.4 0.0016 5.5E-08 62.7 3.2 45 82-128 13-58 (354)
81 2r62_A Cell division protease 96.3 0.002 6.7E-08 59.5 3.6 49 81-129 9-67 (268)
82 1ojl_A Transcriptional regulat 96.3 0.0025 8.4E-08 60.5 4.1 47 83-129 2-48 (304)
83 3hws_A ATP-dependent CLP prote 96.3 0.0032 1.1E-07 61.0 4.9 45 84-128 16-73 (363)
84 1qhx_A CPT, protein (chloramph 96.2 0.0023 7.7E-08 55.1 3.2 22 107-128 4-25 (178)
85 2dhr_A FTSH; AAA+ protein, hex 96.2 0.0063 2.2E-07 61.7 7.0 50 80-129 28-87 (499)
86 3lw7_A Adenylate kinase relate 96.2 0.0022 7.4E-08 54.6 3.1 21 107-128 2-22 (179)
87 1odf_A YGR205W, hypothetical 3 96.2 0.0052 1.8E-07 57.9 5.7 27 102-128 27-53 (290)
88 4fcw_A Chaperone protein CLPB; 96.2 0.0028 9.7E-08 59.7 3.8 45 84-128 18-69 (311)
89 2zr9_A Protein RECA, recombina 96.1 0.011 3.9E-07 57.0 7.9 87 105-200 60-148 (349)
90 3kb2_A SPBC2 prophage-derived 96.1 0.003 1E-07 53.7 3.2 22 107-128 2-23 (173)
91 2c9o_A RUVB-like 1; hexameric 96.1 0.0061 2.1E-07 61.1 5.9 48 82-129 36-86 (456)
92 1sxj_C Activator 1 40 kDa subu 96.1 0.0045 1.5E-07 59.4 4.6 45 82-128 24-68 (340)
93 1ly1_A Polynucleotide kinase; 96.0 0.0039 1.3E-07 53.5 3.5 22 107-128 3-24 (181)
94 1zp6_A Hypothetical protein AT 96.0 0.0039 1.4E-07 54.2 3.5 23 106-128 9-31 (191)
95 2px0_A Flagellar biosynthesis 96.0 0.021 7.2E-07 53.8 8.8 24 105-128 104-127 (296)
96 3vaa_A Shikimate kinase, SK; s 95.9 0.0041 1.4E-07 54.8 3.4 23 106-128 25-47 (199)
97 2r44_A Uncharacterized protein 95.9 0.0054 1.8E-07 58.5 4.5 42 83-128 27-68 (331)
98 3io5_A Recombination and repai 95.9 0.022 7.5E-07 54.1 8.5 84 108-200 30-120 (333)
99 2xxa_A Signal recognition part 95.9 0.041 1.4E-06 54.7 10.9 38 91-128 78-122 (433)
100 1kgd_A CASK, peripheral plasma 95.9 0.0044 1.5E-07 53.7 3.3 23 106-128 5-27 (180)
101 1kag_A SKI, shikimate kinase I 95.9 0.0036 1.2E-07 53.5 2.7 22 107-128 5-26 (173)
102 2gno_A DNA polymerase III, gam 95.9 0.035 1.2E-06 52.5 9.8 40 87-128 1-40 (305)
103 2x8a_A Nuclear valosin-contain 95.8 0.0085 2.9E-07 55.8 5.3 48 81-128 8-66 (274)
104 3bh0_A DNAB-like replicative h 95.8 0.044 1.5E-06 52.0 10.3 52 105-162 67-118 (315)
105 3uie_A Adenylyl-sulfate kinase 95.8 0.0058 2E-07 53.8 3.8 23 106-128 25-47 (200)
106 3trf_A Shikimate kinase, SK; a 95.8 0.005 1.7E-07 53.3 3.3 23 106-128 5-27 (185)
107 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.024 8.3E-07 50.4 7.8 23 106-128 23-45 (235)
108 1nks_A Adenylate kinase; therm 95.7 0.0052 1.8E-07 53.2 3.2 22 107-128 2-23 (194)
109 1gvn_B Zeta; postsegregational 95.7 0.011 3.6E-07 55.6 5.5 38 91-128 15-55 (287)
110 1j8m_F SRP54, signal recogniti 95.7 0.048 1.6E-06 51.3 10.0 90 106-200 98-189 (297)
111 1um8_A ATP-dependent CLP prote 95.7 0.0089 3E-07 58.2 5.1 46 83-128 21-94 (376)
112 2rhm_A Putative kinase; P-loop 95.7 0.0061 2.1E-07 52.9 3.5 23 106-128 5-27 (193)
113 1knq_A Gluconate kinase; ALFA/ 95.7 0.0065 2.2E-07 52.1 3.5 23 106-128 8-30 (175)
114 3t61_A Gluconokinase; PSI-biol 95.7 0.0046 1.6E-07 54.5 2.6 23 106-128 18-40 (202)
115 1ixz_A ATP-dependent metallopr 95.7 0.0055 1.9E-07 56.0 3.3 49 81-129 14-72 (254)
116 1kht_A Adenylate kinase; phosp 95.7 0.0059 2E-07 52.8 3.3 22 107-128 4-25 (192)
117 3lda_A DNA repair protein RAD5 95.7 0.062 2.1E-06 52.8 10.9 93 105-200 177-282 (400)
118 3nbx_X ATPase RAVA; AAA+ ATPas 95.6 0.0092 3.1E-07 60.5 4.9 43 83-129 22-64 (500)
119 2jaq_A Deoxyguanosine kinase; 95.6 0.0063 2.2E-07 53.3 3.3 21 108-128 2-22 (205)
120 1uj2_A Uridine-cytidine kinase 95.6 0.0071 2.4E-07 55.4 3.7 25 104-128 20-44 (252)
121 3tr0_A Guanylate kinase, GMP k 95.6 0.0072 2.5E-07 53.1 3.6 23 106-128 7-29 (205)
122 2bdt_A BH3686; alpha-beta prot 95.6 0.0072 2.5E-07 52.5 3.5 22 107-128 3-24 (189)
123 3tau_A Guanylate kinase, GMP k 95.6 0.011 3.7E-07 52.5 4.7 23 106-128 8-30 (208)
124 1a5t_A Delta prime, HOLB; zinc 95.6 0.052 1.8E-06 51.8 9.8 39 89-128 8-46 (334)
125 2ga8_A Hypothetical 39.9 kDa p 95.5 0.013 4.5E-07 56.5 5.5 43 86-128 2-46 (359)
126 4eun_A Thermoresistant glucoki 95.5 0.0073 2.5E-07 53.2 3.4 23 106-128 29-51 (200)
127 3fwy_A Light-independent proto 95.5 0.0076 2.6E-07 57.4 3.7 24 105-128 47-70 (314)
128 2ze6_A Isopentenyl transferase 95.5 0.0075 2.6E-07 55.5 3.5 22 107-128 2-23 (253)
129 2j41_A Guanylate kinase; GMP, 95.5 0.0081 2.8E-07 52.8 3.6 23 106-128 6-28 (207)
130 1tev_A UMP-CMP kinase; ploop, 95.5 0.0082 2.8E-07 52.1 3.6 23 106-128 3-25 (196)
131 3iij_A Coilin-interacting nucl 95.5 0.0065 2.2E-07 52.4 2.9 23 106-128 11-33 (180)
132 1vma_A Cell division protein F 95.5 0.022 7.4E-07 54.0 6.7 24 105-128 103-126 (306)
133 1uf9_A TT1252 protein; P-loop, 95.5 0.0083 2.8E-07 52.5 3.5 25 104-128 6-30 (203)
134 3asz_A Uridine kinase; cytidin 95.5 0.008 2.7E-07 53.2 3.4 24 105-128 5-28 (211)
135 4gp7_A Metallophosphoesterase; 95.5 0.0072 2.5E-07 51.9 3.0 23 106-128 9-31 (171)
136 2p5t_B PEZT; postsegregational 95.5 0.011 3.9E-07 54.2 4.5 40 89-128 12-54 (253)
137 3e70_C DPA, signal recognition 95.5 0.04 1.4E-06 52.7 8.5 24 105-128 128-151 (328)
138 1ex7_A Guanylate kinase; subst 95.4 0.0066 2.2E-07 53.2 2.7 22 107-128 2-23 (186)
139 1y63_A LMAJ004144AAA protein; 95.4 0.009 3.1E-07 51.9 3.6 24 105-128 9-32 (184)
140 2if2_A Dephospho-COA kinase; a 95.4 0.0071 2.4E-07 53.2 3.0 22 107-128 2-23 (204)
141 2qt1_A Nicotinamide riboside k 95.4 0.0088 3E-07 52.8 3.6 24 105-128 20-43 (207)
142 2qor_A Guanylate kinase; phosp 95.4 0.0068 2.3E-07 53.6 2.8 24 105-128 11-34 (204)
143 1zuh_A Shikimate kinase; alpha 95.4 0.0083 2.9E-07 51.0 3.3 24 105-128 6-29 (168)
144 1ukz_A Uridylate kinase; trans 95.4 0.0098 3.3E-07 52.3 3.8 24 105-128 14-37 (203)
145 1via_A Shikimate kinase; struc 95.4 0.0068 2.3E-07 52.0 2.7 22 107-128 5-26 (175)
146 3a00_A Guanylate kinase, GMP k 95.4 0.0068 2.3E-07 52.8 2.7 22 107-128 2-23 (186)
147 3tqc_A Pantothenate kinase; bi 95.4 0.016 5.5E-07 55.3 5.5 43 86-128 70-114 (321)
148 3tlx_A Adenylate kinase 2; str 95.4 0.013 4.5E-07 53.4 4.7 37 92-128 15-51 (243)
149 1g8p_A Magnesium-chelatase 38 95.4 0.0079 2.7E-07 57.5 3.4 47 81-129 22-68 (350)
150 2kjq_A DNAA-related protein; s 95.4 0.0071 2.4E-07 50.9 2.7 24 106-129 36-59 (149)
151 1cke_A CK, MSSA, protein (cyti 95.4 0.0085 2.9E-07 53.6 3.3 22 107-128 6-27 (227)
152 3kl4_A SRP54, signal recogniti 95.4 0.038 1.3E-06 54.8 8.3 24 105-128 96-119 (433)
153 2hf9_A Probable hydrogenase ni 95.4 0.015 5.3E-07 51.7 5.0 39 89-129 23-61 (226)
154 1jjv_A Dephospho-COA kinase; P 95.4 0.0095 3.2E-07 52.5 3.6 22 107-128 3-24 (206)
155 2c95_A Adenylate kinase 1; tra 95.4 0.0087 3E-07 52.1 3.2 23 106-128 9-31 (196)
156 1ye8_A Protein THEP1, hypothet 95.3 0.0092 3.1E-07 51.8 3.3 22 108-129 2-23 (178)
157 3cm0_A Adenylate kinase; ATP-b 95.3 0.01 3.5E-07 51.3 3.5 23 106-128 4-26 (186)
158 2vli_A Antibiotic resistance p 95.3 0.0072 2.5E-07 52.0 2.5 23 106-128 5-27 (183)
159 2yvu_A Probable adenylyl-sulfa 95.3 0.012 3.9E-07 51.1 3.8 24 105-128 12-35 (186)
160 2plr_A DTMP kinase, probable t 95.3 0.01 3.5E-07 52.2 3.5 23 106-128 4-26 (213)
161 2iyv_A Shikimate kinase, SK; t 95.3 0.0073 2.5E-07 52.2 2.5 22 107-128 3-24 (184)
162 3dm5_A SRP54, signal recogniti 95.3 0.055 1.9E-06 53.8 9.0 24 105-128 99-122 (443)
163 3a4m_A L-seryl-tRNA(SEC) kinas 95.3 0.011 3.6E-07 54.6 3.7 23 106-128 4-26 (260)
164 1e6c_A Shikimate kinase; phosp 95.2 0.0083 2.8E-07 51.1 2.7 22 107-128 3-24 (173)
165 1fx0_B ATP synthase beta chain 95.2 0.036 1.2E-06 55.6 7.7 103 94-200 154-275 (498)
166 2pbr_A DTMP kinase, thymidylat 95.2 0.01 3.6E-07 51.4 3.3 21 108-128 2-22 (195)
167 2wsm_A Hydrogenase expression/ 95.2 0.013 4.5E-07 52.0 4.0 41 87-129 13-53 (221)
168 2b8t_A Thymidine kinase; deoxy 95.2 0.0048 1.6E-07 55.7 1.1 86 106-200 12-98 (223)
169 2ck3_D ATP synthase subunit be 95.2 0.027 9.4E-07 56.2 6.5 65 94-162 142-207 (482)
170 2bwj_A Adenylate kinase 5; pho 95.2 0.0097 3.3E-07 51.9 3.0 23 106-128 12-34 (199)
171 2pt5_A Shikimate kinase, SK; a 95.2 0.011 3.8E-07 50.1 3.3 21 108-128 2-22 (168)
172 1qf9_A UMP/CMP kinase, protein 95.2 0.011 3.7E-07 51.1 3.3 23 106-128 6-28 (194)
173 1lvg_A Guanylate kinase, GMP k 95.2 0.0089 3E-07 52.7 2.7 23 106-128 4-26 (198)
174 2cdn_A Adenylate kinase; phosp 95.1 0.013 4.3E-07 51.5 3.6 24 105-128 19-42 (201)
175 2bbw_A Adenylate kinase 4, AK4 95.1 0.011 3.9E-07 53.8 3.4 23 106-128 27-49 (246)
176 2ffh_A Protein (FFH); SRP54, s 95.1 0.059 2E-06 53.4 8.7 24 105-128 97-120 (425)
177 1pzn_A RAD51, DNA repair and r 95.1 0.035 1.2E-06 53.5 7.0 94 104-200 129-240 (349)
178 3p32_A Probable GTPase RV1496/ 95.1 0.022 7.6E-07 55.0 5.5 37 92-128 65-101 (355)
179 2jeo_A Uridine-cytidine kinase 95.0 0.015 5.1E-07 53.0 3.9 24 105-128 24-47 (245)
180 3aez_A Pantothenate kinase; tr 95.0 0.014 4.9E-07 55.4 3.8 25 104-128 88-112 (312)
181 1znw_A Guanylate kinase, GMP k 95.0 0.013 4.3E-07 51.9 3.2 23 106-128 20-42 (207)
182 1sky_E F1-ATPase, F1-ATP synth 95.0 0.027 9.1E-07 56.4 5.8 63 95-161 141-204 (473)
183 3ice_A Transcription terminati 95.0 0.0076 2.6E-07 58.7 1.8 34 94-128 163-196 (422)
184 2q6t_A DNAB replication FORK h 95.0 0.079 2.7E-06 52.7 9.4 64 94-163 189-252 (444)
185 1g41_A Heat shock protein HSLU 95.0 0.022 7.5E-07 56.7 5.2 52 83-136 15-78 (444)
186 1nn5_A Similar to deoxythymidy 95.0 0.013 4.6E-07 51.7 3.3 23 106-128 9-31 (215)
187 2grj_A Dephospho-COA kinase; T 95.0 0.016 5.3E-07 51.0 3.7 24 105-128 11-34 (192)
188 2yhs_A FTSY, cell division pro 94.9 0.093 3.2E-06 52.8 9.7 24 105-128 292-315 (503)
189 2wwf_A Thymidilate kinase, put 94.9 0.013 4.5E-07 51.7 3.2 23 106-128 10-32 (212)
190 1xjc_A MOBB protein homolog; s 94.9 0.015 5E-07 50.1 3.3 24 105-128 3-26 (169)
191 3ney_A 55 kDa erythrocyte memb 94.9 0.015 5.2E-07 51.3 3.4 24 105-128 18-41 (197)
192 2pez_A Bifunctional 3'-phospho 94.9 0.018 6E-07 49.6 3.7 23 106-128 5-27 (179)
193 1aky_A Adenylate kinase; ATP:A 94.8 0.016 5.4E-07 51.7 3.4 23 106-128 4-26 (220)
194 2z0h_A DTMP kinase, thymidylat 94.8 0.016 5.4E-07 50.4 3.3 21 108-128 2-22 (197)
195 2v54_A DTMP kinase, thymidylat 94.8 0.016 5.3E-07 50.8 3.3 23 106-128 4-26 (204)
196 4a74_A DNA repair and recombin 94.8 0.04 1.4E-06 49.0 6.1 46 105-152 24-73 (231)
197 4e22_A Cytidylate kinase; P-lo 94.8 0.015 5.2E-07 53.3 3.3 23 106-128 27-49 (252)
198 1gtv_A TMK, thymidylate kinase 94.8 0.0073 2.5E-07 53.4 1.1 22 107-128 1-22 (214)
199 3umf_A Adenylate kinase; rossm 94.8 0.02 6.7E-07 51.5 3.9 25 104-128 27-51 (217)
200 1z6g_A Guanylate kinase; struc 94.8 0.013 4.4E-07 52.5 2.7 23 106-128 23-45 (218)
201 4a1f_A DNAB helicase, replicat 94.8 0.081 2.8E-06 50.7 8.4 51 106-162 46-96 (338)
202 1m7g_A Adenylylsulfate kinase; 94.8 0.02 6.7E-07 50.8 3.8 23 106-128 25-47 (211)
203 1zd8_A GTP:AMP phosphotransfer 94.7 0.015 5.1E-07 52.2 3.0 23 106-128 7-29 (227)
204 1vht_A Dephospho-COA kinase; s 94.7 0.02 6.8E-07 50.9 3.8 23 106-128 4-26 (218)
205 1htw_A HI0065; nucleotide-bind 94.7 0.02 6.9E-07 48.6 3.5 23 106-128 33-55 (158)
206 1zu4_A FTSY; GTPase, signal re 94.7 0.037 1.3E-06 52.7 5.7 24 105-128 104-127 (320)
207 3fb4_A Adenylate kinase; psych 94.6 0.019 6.6E-07 50.9 3.3 21 108-128 2-22 (216)
208 1zak_A Adenylate kinase; ATP:A 94.6 0.015 5.3E-07 51.9 2.7 23 106-128 5-27 (222)
209 1sq5_A Pantothenate kinase; P- 94.6 0.037 1.3E-06 52.3 5.4 25 104-128 78-102 (308)
210 2ehv_A Hypothetical protein PH 94.5 0.019 6.4E-07 51.9 3.2 22 106-127 30-51 (251)
211 1rj9_A FTSY, signal recognitio 94.5 0.02 6.9E-07 54.1 3.5 24 105-128 101-124 (304)
212 2f6r_A COA synthase, bifunctio 94.5 0.02 6.9E-07 53.4 3.5 24 105-128 74-97 (281)
213 1s96_A Guanylate kinase, GMP k 94.5 0.021 7.3E-07 51.3 3.4 25 105-129 15-39 (219)
214 3b85_A Phosphate starvation-in 94.5 0.036 1.2E-06 49.3 4.8 22 107-128 23-44 (208)
215 3ake_A Cytidylate kinase; CMP 94.5 0.022 7.4E-07 50.0 3.3 21 108-128 4-24 (208)
216 3dl0_A Adenylate kinase; phosp 94.4 0.022 7.4E-07 50.6 3.3 21 108-128 2-22 (216)
217 3lnc_A Guanylate kinase, GMP k 94.4 0.014 5E-07 52.5 2.1 23 106-128 27-50 (231)
218 3cf2_A TER ATPase, transitiona 94.3 0.062 2.1E-06 57.4 7.1 95 80-200 474-579 (806)
219 3nwj_A ATSK2; P loop, shikimat 94.3 0.019 6.4E-07 52.8 2.7 23 106-128 48-70 (250)
220 2i3b_A HCR-ntpase, human cance 94.3 0.02 6.8E-07 50.2 2.8 22 108-129 3-24 (189)
221 1tue_A Replication protein E1; 94.3 0.036 1.2E-06 49.2 4.3 39 89-128 42-80 (212)
222 2onk_A Molybdate/tungstate ABC 94.3 0.025 8.6E-07 51.5 3.4 34 107-143 25-58 (240)
223 3b9q_A Chloroplast SRP recepto 94.3 0.027 9.4E-07 53.2 3.8 24 105-128 99-122 (302)
224 3k1j_A LON protease, ATP-depen 94.2 0.062 2.1E-06 55.8 6.7 42 83-128 41-82 (604)
225 3l0o_A Transcription terminati 94.2 0.07 2.4E-06 52.0 6.5 36 92-128 162-197 (427)
226 3pxi_A Negative regulator of g 94.2 0.035 1.2E-06 59.2 4.9 46 83-128 491-543 (758)
227 3d3q_A TRNA delta(2)-isopenten 94.2 0.027 9.2E-07 54.0 3.5 22 107-128 8-29 (340)
228 2f1r_A Molybdopterin-guanine d 94.2 0.014 4.8E-07 50.3 1.4 22 107-128 3-24 (171)
229 2j37_W Signal recognition part 94.2 0.15 5.1E-06 51.6 9.2 24 105-128 100-123 (504)
230 1np6_A Molybdopterin-guanine d 94.2 0.028 9.6E-07 48.6 3.3 23 106-128 6-28 (174)
231 3a8t_A Adenylate isopentenyltr 94.1 0.028 9.7E-07 53.8 3.6 23 106-128 40-62 (339)
232 3tif_A Uncharacterized ABC tra 94.1 0.026 8.8E-07 51.3 3.1 35 106-143 31-65 (235)
233 1svm_A Large T antigen; AAA+ f 94.1 0.05 1.7E-06 53.1 5.3 36 93-128 156-191 (377)
234 3m6a_A ATP-dependent protease 94.1 0.033 1.1E-06 57.1 4.2 45 84-128 82-130 (543)
235 1q57_A DNA primase/helicase; d 94.0 0.26 8.8E-06 49.8 10.7 54 105-163 241-294 (503)
236 1ltq_A Polynucleotide kinase; 94.0 0.031 1E-06 52.3 3.5 22 107-128 3-24 (301)
237 2qe7_A ATP synthase subunit al 94.0 0.083 2.8E-06 53.0 6.8 100 94-200 151-263 (502)
238 2xb4_A Adenylate kinase; ATP-b 94.0 0.03 1E-06 50.1 3.3 21 108-128 2-22 (223)
239 3be4_A Adenylate kinase; malar 94.0 0.026 8.7E-07 50.3 2.8 22 107-128 6-27 (217)
240 2pcj_A ABC transporter, lipopr 94.0 0.025 8.4E-07 51.0 2.7 35 106-143 30-64 (224)
241 1ak2_A Adenylate kinase isoenz 94.0 0.033 1.1E-06 50.2 3.6 23 106-128 16-38 (233)
242 4eaq_A DTMP kinase, thymidylat 93.9 0.059 2E-06 48.6 5.1 25 105-129 25-49 (229)
243 3r20_A Cytidylate kinase; stru 93.9 0.033 1.1E-06 50.6 3.3 23 106-128 9-31 (233)
244 2r9v_A ATP synthase subunit al 93.9 0.056 1.9E-06 54.3 5.3 100 94-200 164-276 (515)
245 2cbz_A Multidrug resistance-as 93.9 0.029 1E-06 51.0 3.0 23 106-128 31-53 (237)
246 1a7j_A Phosphoribulokinase; tr 93.9 0.021 7.1E-07 53.7 2.0 24 105-128 4-27 (290)
247 1e4v_A Adenylate kinase; trans 93.9 0.03 1E-06 49.6 3.1 21 108-128 2-22 (214)
248 1yrb_A ATP(GTP)binding protein 93.9 0.036 1.2E-06 50.5 3.7 24 105-128 13-36 (262)
249 3crm_A TRNA delta(2)-isopenten 93.8 0.034 1.2E-06 52.9 3.5 23 106-128 5-27 (323)
250 1b0u_A Histidine permease; ABC 93.8 0.03 1E-06 51.8 3.0 35 106-143 32-66 (262)
251 3gfo_A Cobalt import ATP-bindi 93.8 0.03 1E-06 52.1 3.0 35 106-143 34-68 (275)
252 2og2_A Putative signal recogni 93.8 0.038 1.3E-06 53.5 3.8 24 105-128 156-179 (359)
253 2d2e_A SUFC protein; ABC-ATPas 93.8 0.035 1.2E-06 50.9 3.3 37 106-143 29-65 (250)
254 1ji0_A ABC transporter; ATP bi 93.7 0.032 1.1E-06 50.8 3.0 35 106-143 32-66 (240)
255 1g6h_A High-affinity branched- 93.7 0.032 1.1E-06 51.3 3.0 35 106-143 33-67 (257)
256 4g1u_C Hemin import ATP-bindin 93.7 0.033 1.1E-06 51.6 3.0 35 106-143 37-71 (266)
257 3exa_A TRNA delta(2)-isopenten 93.7 0.039 1.3E-06 52.2 3.5 23 106-128 3-25 (322)
258 1mv5_A LMRA, multidrug resista 93.6 0.036 1.2E-06 50.6 3.2 23 106-128 28-50 (243)
259 2zu0_C Probable ATP-dependent 93.6 0.037 1.3E-06 51.3 3.3 36 106-143 46-82 (267)
260 2pze_A Cystic fibrosis transme 93.6 0.034 1.1E-06 50.3 2.9 23 106-128 34-56 (229)
261 2olj_A Amino acid ABC transpor 93.6 0.034 1.2E-06 51.4 3.0 36 105-143 49-84 (263)
262 2wji_A Ferrous iron transport 93.6 0.061 2.1E-06 45.3 4.4 23 107-129 4-26 (165)
263 3cmu_A Protein RECA, recombina 93.6 0.16 5.5E-06 59.2 9.0 97 95-200 1415-1514(2050)
264 1r6b_X CLPA protein; AAA+, N-t 93.6 0.082 2.8E-06 56.3 6.3 47 82-128 457-510 (758)
265 1q3t_A Cytidylate kinase; nucl 93.6 0.044 1.5E-06 49.5 3.6 25 104-128 14-38 (236)
266 2ff7_A Alpha-hemolysin translo 93.6 0.035 1.2E-06 50.7 3.0 35 106-143 35-69 (247)
267 3zvl_A Bifunctional polynucleo 93.5 0.037 1.3E-06 54.7 3.3 25 104-128 256-280 (416)
268 1oix_A RAS-related protein RAB 93.5 0.038 1.3E-06 48.0 3.0 24 106-129 29-52 (191)
269 2v3c_C SRP54, signal recogniti 93.5 0.047 1.6E-06 54.2 4.0 24 105-128 98-121 (432)
270 1sgw_A Putative ABC transporte 93.5 0.03 1E-06 50.1 2.4 23 106-128 35-57 (214)
271 3end_A Light-independent proto 93.5 0.045 1.5E-06 51.5 3.7 25 104-128 39-63 (307)
272 2zej_A Dardarin, leucine-rich 93.5 0.035 1.2E-06 47.7 2.7 22 108-129 4-25 (184)
273 1vpl_A ABC transporter, ATP-bi 93.5 0.037 1.3E-06 50.9 3.0 35 106-143 41-75 (256)
274 3sr0_A Adenylate kinase; phosp 93.4 0.044 1.5E-06 48.7 3.3 81 108-204 2-87 (206)
275 1u0j_A DNA replication protein 93.4 0.082 2.8E-06 48.8 5.2 36 93-128 91-126 (267)
276 2vp4_A Deoxynucleoside kinase; 93.4 0.036 1.2E-06 49.9 2.8 25 104-128 18-42 (230)
277 2ghi_A Transport protein; mult 93.4 0.039 1.3E-06 50.9 3.0 34 106-143 46-79 (260)
278 2ixe_A Antigen peptide transpo 93.4 0.038 1.3E-06 51.3 3.0 36 105-143 44-79 (271)
279 2f9l_A RAB11B, member RAS onco 93.4 0.042 1.4E-06 47.8 3.1 24 106-129 5-28 (199)
280 1fx0_A ATP synthase alpha chai 93.4 0.09 3.1E-06 52.9 5.8 86 107-200 164-264 (507)
281 2r6a_A DNAB helicase, replicat 93.4 0.21 7.2E-06 49.8 8.6 51 105-160 202-252 (454)
282 4hlc_A DTMP kinase, thymidylat 93.4 0.11 3.9E-06 45.9 5.9 30 107-138 3-32 (205)
283 3foz_A TRNA delta(2)-isopenten 93.4 0.053 1.8E-06 51.3 3.8 24 105-128 9-32 (316)
284 2eyu_A Twitching motility prot 93.3 0.055 1.9E-06 49.9 3.9 23 106-128 25-47 (261)
285 2yz2_A Putative ABC transporte 93.3 0.04 1.4E-06 51.0 3.0 35 106-143 33-67 (266)
286 2qi9_C Vitamin B12 import ATP- 93.3 0.041 1.4E-06 50.4 3.0 34 106-143 26-59 (249)
287 2dyk_A GTP-binding protein; GT 93.3 0.055 1.9E-06 44.8 3.6 23 107-129 2-24 (161)
288 3hjn_A DTMP kinase, thymidylat 93.3 0.086 2.9E-06 46.3 5.0 34 108-143 2-35 (197)
289 2c61_A A-type ATP synthase non 93.3 0.048 1.7E-06 54.4 3.6 104 94-200 141-258 (469)
290 2ihy_A ABC transporter, ATP-bi 93.2 0.042 1.4E-06 51.3 3.0 35 106-143 47-81 (279)
291 2nq2_C Hypothetical ABC transp 93.2 0.043 1.5E-06 50.4 2.9 23 106-128 31-53 (253)
292 2ged_A SR-beta, signal recogni 93.2 0.062 2.1E-06 46.2 3.8 26 104-129 46-71 (193)
293 1nlf_A Regulatory protein REPA 93.1 0.043 1.5E-06 50.9 2.9 23 106-128 30-52 (279)
294 3gqb_B V-type ATP synthase bet 93.1 0.042 1.4E-06 54.6 2.9 91 108-200 149-260 (464)
295 2ce2_X GTPase HRAS; signaling 93.1 0.064 2.2E-06 44.3 3.7 22 108-129 5-26 (166)
296 2ocp_A DGK, deoxyguanosine kin 93.1 0.053 1.8E-06 49.0 3.4 23 106-128 2-24 (241)
297 3vr4_D V-type sodium ATPase su 93.1 0.065 2.2E-06 53.2 4.2 103 94-200 140-257 (465)
298 1z2a_A RAS-related protein RAB 93.1 0.053 1.8E-06 45.2 3.1 24 106-129 5-28 (168)
299 2v9p_A Replication protein E1; 93.1 0.053 1.8E-06 51.2 3.4 24 105-128 125-148 (305)
300 1cr0_A DNA primase/helicase; R 93.0 0.047 1.6E-06 51.0 3.0 53 106-164 35-88 (296)
301 2wjg_A FEOB, ferrous iron tran 93.0 0.065 2.2E-06 45.8 3.7 24 106-129 7-30 (188)
302 1ls1_A Signal recognition part 93.0 0.061 2.1E-06 50.6 3.7 24 105-128 97-120 (295)
303 1fzq_A ADP-ribosylation factor 93.0 0.061 2.1E-06 46.0 3.5 26 104-129 14-39 (181)
304 1cp2_A CP2, nitrogenase iron p 92.9 0.053 1.8E-06 49.7 3.2 22 107-128 2-23 (269)
305 3oaa_A ATP synthase subunit al 92.9 0.14 4.7E-06 51.4 6.3 99 94-200 151-263 (513)
306 2lkc_A Translation initiation 92.9 0.095 3.3E-06 44.2 4.6 25 105-129 7-31 (178)
307 1tq4_A IIGP1, interferon-induc 92.9 0.051 1.7E-06 53.6 3.1 24 105-128 68-91 (413)
308 3bgw_A DNAB-like replicative h 92.9 0.22 7.6E-06 49.5 7.8 52 105-162 196-247 (444)
309 3con_A GTPase NRAS; structural 92.9 0.057 2E-06 46.3 3.1 23 107-129 22-44 (190)
310 1u8z_A RAS-related protein RAL 92.8 0.08 2.8E-06 43.9 4.0 23 107-129 5-27 (168)
311 2nzj_A GTP-binding protein REM 92.8 0.056 1.9E-06 45.4 3.0 24 106-129 4-27 (175)
312 1nij_A Hypothetical protein YJ 92.8 0.053 1.8E-06 51.5 3.1 25 105-129 3-27 (318)
313 2qm8_A GTPase/ATPase; G protei 92.8 0.1 3.6E-06 49.9 5.1 35 94-128 43-77 (337)
314 4edh_A DTMP kinase, thymidylat 92.7 0.13 4.4E-06 45.9 5.3 23 106-128 6-28 (213)
315 2pjz_A Hypothetical protein ST 92.7 0.056 1.9E-06 49.9 3.0 34 106-143 30-63 (263)
316 1z08_A RAS-related protein RAB 92.7 0.087 3E-06 44.0 4.0 24 106-129 6-29 (170)
317 3sop_A Neuronal-specific septi 92.7 0.057 1.9E-06 50.1 3.0 21 108-128 4-24 (270)
318 2p67_A LAO/AO transport system 92.7 0.11 3.8E-06 49.8 5.1 35 94-128 44-78 (341)
319 2erx_A GTP-binding protein DI- 92.6 0.065 2.2E-06 44.8 3.1 23 107-129 4-26 (172)
320 1c1y_A RAS-related protein RAP 92.6 0.066 2.3E-06 44.5 3.1 22 108-129 5-26 (167)
321 1ek0_A Protein (GTP-binding pr 92.6 0.073 2.5E-06 44.3 3.3 22 108-129 5-26 (170)
322 3cmu_A Protein RECA, recombina 92.6 0.26 8.9E-06 57.5 8.7 100 92-200 368-470 (2050)
323 2qmh_A HPR kinase/phosphorylas 92.6 0.075 2.6E-06 46.9 3.4 23 106-128 34-56 (205)
324 3q85_A GTP-binding protein REM 92.5 0.066 2.3E-06 44.8 3.0 22 107-128 3-24 (169)
325 1kao_A RAP2A; GTP-binding prot 92.5 0.069 2.4E-06 44.3 3.1 22 108-129 5-26 (167)
326 1z0j_A RAB-22, RAS-related pro 92.5 0.074 2.5E-06 44.3 3.3 23 107-129 7-29 (170)
327 2afh_E Nitrogenase iron protei 92.5 0.066 2.2E-06 49.8 3.2 23 106-128 2-24 (289)
328 1g8f_A Sulfate adenylyltransfe 92.5 0.093 3.2E-06 53.2 4.5 46 83-128 372-417 (511)
329 2dr3_A UPF0273 protein PH0284; 92.5 0.063 2.1E-06 48.2 2.9 36 106-143 23-58 (247)
330 1p5z_B DCK, deoxycytidine kina 92.4 0.047 1.6E-06 50.1 2.1 24 105-128 23-46 (263)
331 3nh6_A ATP-binding cassette SU 92.4 0.047 1.6E-06 51.6 2.1 24 105-128 79-102 (306)
332 1ky3_A GTP-binding protein YPT 92.4 0.077 2.6E-06 44.8 3.3 25 105-129 7-31 (182)
333 1qvr_A CLPB protein; coiled co 92.4 0.11 3.9E-06 56.1 5.3 45 84-128 559-610 (854)
334 2ck3_A ATP synthase subunit al 92.4 0.09 3.1E-06 52.9 4.2 104 94-200 151-271 (510)
335 3kta_A Chromosome segregation 92.3 0.071 2.4E-06 45.7 3.0 22 107-128 27-48 (182)
336 2gj8_A MNME, tRNA modification 92.3 0.068 2.3E-06 45.5 2.8 23 107-129 5-27 (172)
337 4dsu_A GTPase KRAS, isoform 2B 92.3 0.1 3.5E-06 44.4 3.9 24 107-130 5-28 (189)
338 1r8s_A ADP-ribosylation factor 92.3 0.078 2.7E-06 44.1 3.1 21 109-129 3-23 (164)
339 3t1o_A Gliding protein MGLA; G 92.3 0.076 2.6E-06 45.5 3.1 23 106-128 14-36 (198)
340 3kkq_A RAS-related protein M-R 92.2 0.1 3.6E-06 44.3 4.0 25 105-129 17-41 (183)
341 3eph_A TRNA isopentenyltransfe 92.2 0.073 2.5E-06 52.2 3.2 23 106-128 2-24 (409)
342 3def_A T7I23.11 protein; chlor 92.2 0.15 5.1E-06 46.7 5.2 37 93-129 23-59 (262)
343 3q72_A GTP-binding protein RAD 92.2 0.068 2.3E-06 44.5 2.6 21 108-128 4-24 (166)
344 1h65_A Chloroplast outer envel 92.2 0.15 5.3E-06 46.8 5.3 35 95-129 28-62 (270)
345 3ihw_A Centg3; RAS, centaurin, 92.2 0.079 2.7E-06 45.6 3.1 24 106-129 20-43 (184)
346 2bbs_A Cystic fibrosis transme 92.1 0.066 2.2E-06 50.2 2.7 24 105-128 63-86 (290)
347 1r2q_A RAS-related protein RAB 92.1 0.083 2.8E-06 44.0 3.1 23 107-129 7-29 (170)
348 1m7b_A RND3/RHOE small GTP-bin 92.1 0.073 2.5E-06 45.5 2.8 24 106-129 7-30 (184)
349 3fvq_A Fe(3+) IONS import ATP- 92.1 0.072 2.5E-06 51.5 3.0 23 106-128 30-52 (359)
350 1wms_A RAB-9, RAB9, RAS-relate 92.1 0.082 2.8E-06 44.6 3.1 24 106-129 7-30 (177)
351 3tui_C Methionine import ATP-b 92.1 0.08 2.7E-06 51.3 3.3 23 106-128 54-76 (366)
352 2h92_A Cytidylate kinase; ross 92.1 0.071 2.4E-06 47.2 2.7 22 107-128 4-25 (219)
353 1upt_A ARL1, ADP-ribosylation 92.1 0.092 3.2E-06 43.9 3.3 24 106-129 7-30 (171)
354 3t5g_A GTP-binding protein RHE 92.0 0.1 3.6E-06 44.2 3.7 24 106-129 6-29 (181)
355 1nrj_B SR-beta, signal recogni 92.0 0.097 3.3E-06 46.0 3.6 25 105-129 11-35 (218)
356 3c5c_A RAS-like protein 12; GD 92.0 0.091 3.1E-06 45.2 3.3 24 106-129 21-44 (187)
357 1lw7_A Transcriptional regulat 92.0 0.08 2.7E-06 51.2 3.2 23 106-128 170-192 (365)
358 2hxs_A RAB-26, RAS-related pro 92.0 0.088 3E-06 44.4 3.2 24 106-129 6-29 (178)
359 3cmw_A Protein RECA, recombina 92.0 0.24 8.4E-06 56.9 7.6 87 105-200 382-470 (1706)
360 1g16_A RAS-related protein SEC 92.0 0.085 2.9E-06 44.0 3.0 23 107-129 4-26 (170)
361 2fn4_A P23, RAS-related protei 92.0 0.077 2.6E-06 44.8 2.8 25 105-129 8-32 (181)
362 1z0f_A RAB14, member RAS oncog 92.0 0.087 3E-06 44.3 3.1 25 105-129 14-38 (179)
363 3tw8_B RAS-related protein RAB 92.0 0.075 2.6E-06 44.8 2.7 25 105-129 8-32 (181)
364 1z47_A CYSA, putative ABC-tran 92.0 0.084 2.9E-06 50.9 3.3 23 106-128 41-63 (355)
365 1svi_A GTP-binding protein YSX 91.8 0.093 3.2E-06 45.1 3.2 25 105-129 22-46 (195)
366 3mfy_A V-type ATP synthase alp 91.8 0.26 9E-06 50.0 6.8 59 94-159 216-275 (588)
367 2a9k_A RAS-related protein RAL 91.8 0.12 4.1E-06 43.8 3.9 24 106-129 18-41 (187)
368 2axn_A 6-phosphofructo-2-kinas 91.8 0.1 3.4E-06 53.2 3.8 23 106-128 35-57 (520)
369 3bc1_A RAS-related protein RAB 91.8 0.093 3.2E-06 44.8 3.1 25 105-129 10-34 (195)
370 2www_A Methylmalonic aciduria 91.8 0.11 3.7E-06 50.0 3.9 24 105-128 73-96 (349)
371 1mh1_A RAC1; GTP-binding, GTPa 91.8 0.13 4.3E-06 43.7 3.9 23 107-129 6-28 (186)
372 2yv5_A YJEQ protein; hydrolase 91.8 0.14 4.8E-06 48.2 4.5 33 91-129 155-187 (302)
373 2cxx_A Probable GTP-binding pr 91.7 0.081 2.8E-06 45.2 2.6 22 108-129 3-24 (190)
374 2bme_A RAB4A, RAS-related prot 91.7 0.093 3.2E-06 44.6 3.1 25 105-129 9-33 (186)
375 3pqc_A Probable GTP-binding pr 91.7 0.098 3.4E-06 44.7 3.2 25 105-129 22-46 (195)
376 2yyz_A Sugar ABC transporter, 91.7 0.093 3.2E-06 50.7 3.3 23 106-128 29-51 (359)
377 3rlf_A Maltose/maltodextrin im 91.7 0.092 3.2E-06 51.1 3.3 23 106-128 29-51 (381)
378 1p9r_A General secretion pathw 91.7 0.19 6.4E-06 49.7 5.6 23 106-128 167-189 (418)
379 3bwd_D RAC-like GTP-binding pr 91.7 0.11 3.6E-06 44.1 3.3 23 107-129 9-31 (182)
380 2oil_A CATX-8, RAS-related pro 91.7 0.097 3.3E-06 45.0 3.1 25 105-129 24-48 (193)
381 3tkl_A RAS-related protein RAB 91.7 0.14 4.7E-06 44.0 4.1 26 105-130 15-40 (196)
382 2y8e_A RAB-protein 6, GH09086P 91.7 0.097 3.3E-06 44.0 3.0 23 107-129 15-37 (179)
383 2it1_A 362AA long hypothetical 91.6 0.095 3.3E-06 50.7 3.3 23 106-128 29-51 (362)
384 2efe_B Small GTP-binding prote 91.6 0.11 3.6E-06 44.0 3.3 24 106-129 12-35 (181)
385 1m2o_B GTP-binding protein SAR 91.6 0.089 3E-06 45.5 2.8 23 107-129 24-46 (190)
386 2bov_A RAla, RAS-related prote 91.6 0.13 4.5E-06 44.5 3.9 25 105-129 13-37 (206)
387 3cbq_A GTP-binding protein REM 91.6 0.077 2.6E-06 46.2 2.4 24 105-128 22-45 (195)
388 3fdi_A Uncharacterized protein 91.6 0.095 3.3E-06 46.2 3.0 23 106-128 6-28 (201)
389 1zj6_A ADP-ribosylation factor 91.6 0.2 6.9E-06 42.8 5.0 35 92-129 5-39 (187)
390 1ypw_A Transitional endoplasmi 91.6 0.052 1.8E-06 58.4 1.4 49 80-128 474-533 (806)
391 1vg8_A RAS-related protein RAB 91.6 0.11 3.7E-06 45.2 3.3 25 105-129 7-31 (207)
392 1g29_1 MALK, maltose transport 91.6 0.099 3.4E-06 50.8 3.3 23 106-128 29-51 (372)
393 2iwr_A Centaurin gamma 1; ANK 91.5 0.074 2.5E-06 45.0 2.2 23 107-129 8-30 (178)
394 1v43_A Sugar-binding transport 91.5 0.1 3.5E-06 50.7 3.3 23 106-128 37-59 (372)
395 2g6b_A RAS-related protein RAB 91.4 0.11 3.7E-06 43.9 3.1 24 106-129 10-33 (180)
396 2cjw_A GTP-binding protein GEM 91.4 0.11 3.6E-06 45.1 3.1 23 106-128 6-28 (192)
397 2atv_A RERG, RAS-like estrogen 91.4 0.11 3.6E-06 45.0 3.1 24 106-129 28-51 (196)
398 3f9v_A Minichromosome maintena 91.4 0.056 1.9E-06 56.0 1.4 47 82-128 294-349 (595)
399 3llu_A RAS-related GTP-binding 91.3 0.097 3.3E-06 45.3 2.8 23 106-128 20-42 (196)
400 3cr8_A Sulfate adenylyltranfer 91.3 0.1 3.6E-06 53.4 3.3 23 106-128 369-391 (552)
401 3clv_A RAB5 protein, putative; 91.3 0.11 3.8E-06 44.6 3.1 24 106-129 7-30 (208)
402 2ewv_A Twitching motility prot 91.3 0.13 4.3E-06 50.1 3.8 23 106-128 136-158 (372)
403 1f6b_A SAR1; gtpases, N-termin 91.3 0.073 2.5E-06 46.4 1.9 34 95-129 15-48 (198)
404 4dzz_A Plasmid partitioning pr 91.3 0.11 3.9E-06 45.1 3.2 22 107-128 2-24 (206)
405 1pui_A ENGB, probable GTP-bind 91.3 0.07 2.4E-06 46.6 1.7 23 106-128 26-48 (210)
406 4gzl_A RAS-related C3 botulinu 91.3 0.15 5.2E-06 44.5 4.0 24 106-129 30-53 (204)
407 1zbd_A Rabphilin-3A; G protein 91.2 0.11 3.9E-06 45.0 3.1 24 106-129 8-31 (203)
408 2fh5_B SR-beta, signal recogni 91.2 0.12 4.2E-06 45.2 3.3 24 106-129 7-30 (214)
409 3d31_A Sulfate/molybdate ABC t 91.2 0.084 2.9E-06 50.8 2.4 23 106-128 26-48 (348)
410 2gf9_A RAS-related protein RAB 91.2 0.13 4.3E-06 44.2 3.3 24 106-129 22-45 (189)
411 2fg5_A RAB-22B, RAS-related pr 91.2 0.11 3.8E-06 44.7 3.0 24 106-129 23-46 (192)
412 1zd9_A ADP-ribosylation factor 91.2 0.12 4E-06 44.4 3.1 24 106-129 22-45 (188)
413 1ksh_A ARF-like protein 2; sma 91.1 0.12 4E-06 44.2 3.0 26 105-130 17-42 (186)
414 2r8r_A Sensor protein; KDPD, P 91.1 0.12 4.1E-06 46.5 3.1 21 108-128 8-28 (228)
415 3oes_A GTPase rhebl1; small GT 91.1 0.11 3.7E-06 45.2 2.8 24 106-129 24-47 (201)
416 3reg_A RHO-like small GTPase; 91.1 0.12 4.1E-06 44.5 3.1 24 106-129 23-46 (194)
417 2orw_A Thymidine kinase; TMTK, 91.1 0.12 4E-06 44.9 3.0 22 107-128 4-25 (184)
418 2p5s_A RAS and EF-hand domain 91.1 0.13 4.5E-06 44.6 3.3 24 106-129 28-51 (199)
419 1x3s_A RAS-related protein RAB 91.0 0.13 4.6E-06 44.0 3.3 24 106-129 15-38 (195)
420 2a5j_A RAS-related protein RAB 91.0 0.12 4.3E-06 44.3 3.1 24 106-129 21-44 (191)
421 1z06_A RAS-related protein RAB 91.0 0.13 4.6E-06 44.0 3.3 24 106-129 20-43 (189)
422 1bif_A 6-phosphofructo-2-kinas 91.0 0.13 4.5E-06 51.6 3.7 23 106-128 39-61 (469)
423 2qnr_A Septin-2, protein NEDD5 91.0 0.091 3.1E-06 49.5 2.4 20 109-128 21-40 (301)
424 3dz8_A RAS-related protein RAB 91.0 0.11 3.9E-06 44.6 2.8 24 106-129 23-46 (191)
425 2q3h_A RAS homolog gene family 91.0 0.12 4.1E-06 44.7 3.0 24 106-129 20-43 (201)
426 1gwn_A RHO-related GTP-binding 91.0 0.11 3.8E-06 45.6 2.8 24 106-129 28-51 (205)
427 3gmt_A Adenylate kinase; ssgci 91.0 0.12 4.2E-06 46.6 3.1 23 106-128 8-30 (230)
428 3ld9_A DTMP kinase, thymidylat 91.0 0.16 5.5E-06 45.6 3.9 24 105-128 20-43 (223)
429 2ew1_A RAS-related protein RAB 90.9 0.11 3.9E-06 45.4 2.8 25 105-129 25-49 (201)
430 2gza_A Type IV secretion syste 90.9 0.093 3.2E-06 50.8 2.4 22 107-128 176-197 (361)
431 2gf0_A GTP-binding protein DI- 90.9 0.12 4E-06 44.6 2.8 24 106-129 8-31 (199)
432 1oxx_K GLCV, glucose, ABC tran 90.8 0.078 2.7E-06 51.2 1.7 23 106-128 31-53 (353)
433 3lv8_A DTMP kinase, thymidylat 90.8 0.17 5.7E-06 45.9 3.9 37 106-143 27-63 (236)
434 3lxx_A GTPase IMAP family memb 90.8 0.13 4.4E-06 46.3 3.1 26 105-130 28-53 (239)
435 3jvv_A Twitching mobility prot 90.8 0.13 4.5E-06 49.6 3.3 22 107-128 124-145 (356)
436 2obl_A ESCN; ATPase, hydrolase 90.8 0.12 4.1E-06 49.7 3.0 24 106-129 71-94 (347)
437 4tmk_A Protein (thymidylate ki 90.8 0.18 6.2E-06 44.9 4.0 52 107-161 4-55 (213)
438 2qu8_A Putative nucleolar GTP- 90.8 0.16 5.4E-06 45.2 3.7 25 105-129 28-52 (228)
439 4bas_A ADP-ribosylation factor 90.8 0.14 4.9E-06 44.0 3.3 26 104-129 15-40 (199)
440 3gd7_A Fusion complex of cysti 90.7 0.12 4.2E-06 50.5 3.0 23 106-128 47-69 (390)
441 1u0l_A Probable GTPase ENGC; p 90.7 0.21 7.1E-06 46.9 4.5 33 91-128 159-191 (301)
442 1ega_A Protein (GTP-binding pr 90.6 0.15 5.1E-06 47.9 3.5 25 105-129 7-31 (301)
443 3kjh_A CO dehydrogenase/acetyl 90.6 0.11 3.6E-06 46.8 2.3 21 108-128 2-22 (254)
444 3v9p_A DTMP kinase, thymidylat 90.5 0.12 4.2E-06 46.5 2.7 23 106-128 25-47 (227)
445 3ch4_B Pmkase, phosphomevalona 90.5 0.18 6.2E-06 44.5 3.7 24 105-128 10-33 (202)
446 2o52_A RAS-related protein RAB 90.5 0.13 4.4E-06 44.8 2.7 25 105-129 24-48 (200)
447 2bcg_Y Protein YP2, GTP-bindin 90.5 0.14 4.9E-06 44.5 3.0 24 106-129 8-31 (206)
448 3upu_A ATP-dependent DNA helic 90.4 0.27 9.3E-06 49.0 5.4 36 90-128 32-67 (459)
449 2fv8_A H6, RHO-related GTP-bin 90.4 0.15 5E-06 44.6 3.0 24 106-129 25-48 (207)
450 2il1_A RAB12; G-protein, GDP, 90.4 0.12 4.2E-06 44.5 2.5 24 106-129 26-49 (192)
451 2g3y_A GTP-binding protein GEM 90.4 0.15 5E-06 45.3 3.0 23 106-128 37-59 (211)
452 2j1l_A RHO-related GTP-binding 90.3 0.13 4.5E-06 45.3 2.7 24 106-129 34-57 (214)
453 4dkx_A RAS-related protein RAB 90.3 0.16 5.4E-06 45.3 3.2 22 108-129 15-36 (216)
454 3ez2_A Plasmid partition prote 90.3 0.27 9.1E-06 48.0 5.1 26 103-128 105-131 (398)
455 2zts_A Putative uncharacterize 90.3 0.16 5.4E-06 45.6 3.2 50 105-159 29-78 (251)
456 3cph_A RAS-related protein SEC 90.3 0.16 5.4E-06 44.3 3.1 24 106-129 20-43 (213)
457 1moz_A ARL1, ADP-ribosylation 90.2 0.098 3.4E-06 44.4 1.7 24 105-128 17-40 (183)
458 2b6h_A ADP-ribosylation factor 90.2 0.13 4.6E-06 44.3 2.6 24 106-129 29-52 (192)
459 2hup_A RAS-related protein RAB 90.2 0.16 5.3E-06 44.3 3.0 25 105-129 28-52 (201)
460 2h17_A ADP-ribosylation factor 90.2 0.13 4.4E-06 43.8 2.4 24 106-129 21-44 (181)
461 2qag_B Septin-6, protein NEDD5 90.2 0.15 5E-06 50.5 3.1 21 109-129 45-65 (427)
462 3q3j_B RHO-related GTP-binding 90.2 0.21 7.3E-06 44.0 3.9 24 106-129 27-50 (214)
463 2atx_A Small GTP binding prote 90.2 0.15 5E-06 43.9 2.8 24 106-129 18-41 (194)
464 2j0v_A RAC-like GTP-binding pr 90.2 0.16 5.4E-06 44.4 3.0 24 106-129 9-32 (212)
465 2gco_A H9, RHO-related GTP-bin 90.1 0.16 5.5E-06 44.1 3.1 24 106-129 25-48 (201)
466 1mky_A Probable GTP-binding pr 90.1 0.31 1.1E-05 48.3 5.5 44 86-129 151-203 (439)
467 3k53_A Ferrous iron transport 90.1 0.17 5.8E-06 46.6 3.4 24 106-129 3-26 (271)
468 3tmk_A Thymidylate kinase; pho 90.1 0.31 1E-05 43.5 4.9 23 106-128 5-27 (216)
469 2pt7_A CAG-ALFA; ATPase, prote 90.1 0.11 3.6E-06 49.7 1.9 34 107-143 172-205 (330)
470 2fu5_C RAS-related protein RAB 90.1 0.1 3.4E-06 44.4 1.6 24 106-129 8-31 (183)
471 2rcn_A Probable GTPase ENGC; Y 90.1 0.17 5.7E-06 48.9 3.3 22 107-128 216-237 (358)
472 3iev_A GTP-binding protein ERA 90.0 0.19 6.6E-06 47.3 3.7 26 104-129 8-33 (308)
473 3cwq_A Para family chromosome 90.0 0.18 6.2E-06 44.5 3.3 21 108-128 2-23 (209)
474 1m8p_A Sulfate adenylyltransfe 90.0 0.19 6.4E-06 51.8 3.8 24 105-128 395-418 (573)
475 1x6v_B Bifunctional 3'-phospho 89.9 0.18 6.3E-06 52.3 3.7 24 105-128 51-74 (630)
476 2gks_A Bifunctional SAT/APS ki 89.9 0.26 8.9E-06 50.4 4.8 24 105-128 371-394 (546)
477 3fkq_A NTRC-like two-domain pr 89.9 0.22 7.5E-06 48.2 4.1 25 104-128 141-166 (373)
478 2npi_A Protein CLP1; CLP1-PCF1 89.9 0.13 4.5E-06 51.5 2.5 23 106-128 138-160 (460)
479 2f7s_A C25KG, RAS-related prot 89.9 0.17 5.8E-06 44.4 3.0 24 106-129 25-48 (217)
480 3llm_A ATP-dependent RNA helic 89.7 0.71 2.4E-05 41.2 7.2 103 91-200 65-185 (235)
481 3cmw_A Protein RECA, recombina 89.7 0.51 1.7E-05 54.4 7.4 88 104-200 1429-1518(1706)
482 3b1v_A Ferrous iron uptake tra 89.7 0.28 9.5E-06 45.4 4.4 24 106-129 3-26 (272)
483 2x77_A ADP-ribosylation factor 89.6 0.24 8.2E-06 42.3 3.7 34 95-128 10-44 (189)
484 1yqt_A RNAse L inhibitor; ATP- 89.6 0.18 6E-06 51.6 3.3 24 106-129 312-335 (538)
485 4akg_A Glutathione S-transfera 89.6 0.72 2.5E-05 55.6 8.8 52 107-164 1268-1319(2695)
486 2h57_A ADP-ribosylation factor 89.6 0.12 4.1E-06 44.3 1.7 24 106-129 21-44 (190)
487 3io3_A DEHA2D07832P; chaperone 89.5 0.22 7.4E-06 47.9 3.7 24 105-128 17-40 (348)
488 3ozx_A RNAse L inhibitor; ATP 89.5 0.16 5.6E-06 51.8 3.0 23 106-128 294-316 (538)
489 1f2t_A RAD50 ABC-ATPase; DNA d 89.4 0.25 8.4E-06 41.2 3.5 23 106-128 23-45 (149)
490 3euj_A Chromosome partition pr 89.4 0.2 7E-06 50.3 3.4 22 107-128 30-51 (483)
491 1yqt_A RNAse L inhibitor; ATP- 89.3 0.19 6.6E-06 51.3 3.3 23 106-128 47-69 (538)
492 2dpy_A FLII, flagellum-specifi 89.3 0.19 6.3E-06 50.0 3.0 24 106-129 157-180 (438)
493 3iqw_A Tail-anchored protein t 89.2 0.43 1.5E-05 45.6 5.5 24 105-128 15-38 (334)
494 2qag_C Septin-7; cell cycle, c 89.1 0.18 6.2E-06 49.8 2.8 21 109-129 34-54 (418)
495 3cpj_B GTP-binding protein YPT 89.0 0.22 7.5E-06 44.0 3.1 25 105-129 12-36 (223)
496 3hdt_A Putative kinase; struct 89.0 0.23 7.9E-06 44.5 3.2 23 106-128 14-36 (223)
497 3ozx_A RNAse L inhibitor; ATP 88.9 0.2 7E-06 51.1 3.2 24 105-128 24-47 (538)
498 3lxw_A GTPase IMAP family memb 88.9 0.22 7.7E-06 45.2 3.1 24 106-129 21-44 (247)
499 3bk7_A ABC transporter ATP-bin 88.9 0.21 7.3E-06 51.7 3.3 24 106-129 382-405 (607)
500 1wf3_A GTP-binding protein; GT 88.9 0.25 8.6E-06 46.4 3.6 25 105-129 6-30 (301)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.6e-42 Score=359.31 Aligned_cols=251 Identities=18% Similarity=0.228 Sum_probs=201.4
Q ss_pred ccchhhHHHHHHHHhcC-CCCceEEEEECCCCCchHHHHHHHHh--cCCCCCCcceeeeeecCCCCCC--CHHHHHHHHH
Q 041194 86 VGLDDRMEKLLDLLIEG-PPQRSMVAILDSIGLDKTAFATEAYN--SSYVKHYFDCHAWITEPYSNEY--DADQILDIVI 160 (418)
Q Consensus 86 vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~--d~~~~~~F~~~~wv~~~vs~~~--~~~~ll~~il 160 (418)
+||++++++|.++|..+ ++..++|+|+||||+||||||+++|+ |.+++.+|++++||+ +++.+ +...+++.|+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~--vs~~~~~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK--DSGTAPKSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE--CCCCSTTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE--ECCCCCCCHHHHHHHHH
Confidence 59999999999999865 45689999999999999999999998 679999999999999 99985 8999999999
Q ss_pred HHhCCCCC---ccccccCCHHHHHHHHHHHhccC-cEEEEEeccCCCc-------------------cccccccccccch
Q 041194 161 KFLMPSSR---LSEIMDKNYEMKKIILHEYLMTK-RYLIVIDDFEDGE-------------------NIRLDLVPTGGPL 217 (418)
Q Consensus 161 ~~l~~~~~---~~~~~~~~~~~l~~~l~~~L~~k-r~LlVLDDvp~~~-------------------~Va~~~~~~~~~~ 217 (418)
.+++.... .+.....+.+.+...+++.|++| ||||||||||+.. .|+..++....+|
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~~~ 288 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEFI 288 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCCSCEEEE
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccccCCCEEEEEcCCHHHHHHcCCCCeEE
Confidence 99987521 11123456778899999999996 9999999995422 3444443211222
Q ss_pred -------------------------------hhhh---ccCcchhhcccch-hh-----hhccc---cc---cccccccc
Q 041194 218 -------------------------------RAIY---KGCPFLLLYHGSI-SL-----EENIG---EA---VQIPLVLR 251 (418)
Q Consensus 218 -------------------------------~~I~---~GlPLAl~~ig~~-~~-----~~~~~---~~---~~i~~~L~ 251 (418)
++|+ +|+||||+++|+. +. .+.+. |. ..+..+|
T Consensus 289 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~~i~~~l- 367 (549)
T 2a5y_B 289 EVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECIT- 367 (549)
T ss_dssp ECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTCCCS-
T ss_pred ECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHHHHHHHH-
Confidence 4566 9999999999987 41 11111 11 1789999
Q ss_pred ccccCCCchhhHhHhh-----------hhccCCCCceechhHHHHHhHhc--CCCCcC-----hHHHHHHHHHHHHhccc
Q 041194 252 YFEYCMSPFCLKLCFL-----------YLSVFPAHLEISTRQLYQLWIAE--GFILDN-----SEATTESYLEQLIKEGF 313 (418)
Q Consensus 252 ~~sy~~L~~~lk~cfl-----------~~s~Fp~~~~i~~~~Li~~Wiae--g~i~~~-----~e~~a~~~l~~Lv~rsl 313 (418)
.+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+... .++.++ ||++|+++||
T Consensus 368 ~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsL 442 (549)
T 2a5y_B 368 PYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGA 442 (549)
T ss_dssp SSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSS
T ss_pred hcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCC
Confidence 9999999999999999 999999999999 8999999 999753 577777 9999999999
Q ss_pred cccccccCCCceeEEEeChhHHHHHhHcCCCcce
Q 041194 314 AEAKKRKAGGTINTCSIPGRWGPLLFLVPSQVEF 347 (418)
Q Consensus 314 l~~~~~~~~g~v~~~~mHdlv~d~a~~~~~~e~~ 347 (418)
+++...+ ++.+|+|||+||+||++++.++++
T Consensus 443 l~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 443 LLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred eeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 9987643 336799999999999999998765
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-33 Score=318.05 Aligned_cols=255 Identities=17% Similarity=0.168 Sum_probs=199.2
Q ss_pred cCCCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCC-CCCCc-ceeeeeecCCCCCCC--HHH
Q 041194 79 SSKSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSY-VKHYF-DCHAWITEPYSNEYD--ADQ 154 (418)
Q Consensus 79 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~-~~~~F-~~~~wv~~~vs~~~~--~~~ 154 (418)
+...+.||||++++++|.++|...++..++|+|+||||+||||||+++|++.+ ...+| +..+||+ +++..+ ...
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~ 197 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS--IGKQDKSGLLM 197 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE--CCSCCHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE--ECCcCchHHHH
Confidence 35667899999999999999987767789999999999999999999999643 35556 5666999 988544 345
Q ss_pred HHHHHHHHhCCCCCccccccCCHHHHHHHHHHHhccC--cEEEEEeccCCCc------------------cccccccccc
Q 041194 155 ILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTK--RYLIVIDDFEDGE------------------NIRLDLVPTG 214 (418)
Q Consensus 155 ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~k--r~LlVLDDvp~~~------------------~Va~~~~~~~ 214 (418)
.+..++..+............+.+.+...++..|.+| |+|||||||++.. .|+..+....
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~~ 277 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPK 277 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSCB
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCCc
Confidence 5777888887644322224567889999999999987 9999999994321 3332211110
Q ss_pred cch------------------------------hhhh---ccCcchhhcccch-hh--------hh---cccccc-----
Q 041194 215 GPL------------------------------RAIY---KGCPFLLLYHGSI-SL--------EE---NIGEAV----- 244 (418)
Q Consensus 215 ~~~------------------------------~~I~---~GlPLAl~~ig~~-~~--------~~---~~~~~~----- 244 (418)
..+ ++|+ +|+||||+++|++ +. ++ ...+..
T Consensus 278 ~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~ 357 (1249)
T 3sfz_A 278 HVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSS 357 (1249)
T ss_dssp CCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCCCCSSCTT
T ss_pred eEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhhhhccccc
Confidence 111 5677 9999999999998 51 11 111111
Q ss_pred -----cccccccccccCCCchhhHhHhhhhccCCCCceechhHHHHHhHhcCCCCcChHHHHHHHHHHHHhccccccccc
Q 041194 245 -----QIPLVLRYFEYCMSPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFILDNSEATTESYLEQLIKEGFAEAKKR 319 (418)
Q Consensus 245 -----~i~~~L~~~sy~~L~~~lk~cfl~~s~Fp~~~~i~~~~Li~~Wiaeg~i~~~~e~~a~~~l~~Lv~rsll~~~~~ 319 (418)
.+..+| .+||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++.++.+|++|+++||++...
T Consensus 358 ~~~~~~~~~~l-~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~~~- 428 (1249)
T 3sfz_A 358 SYDYEALDEAM-SISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFCNR- 428 (1249)
T ss_dssp CTTHHHHHHHH-HHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEEEE-
T ss_pred ccchHHHHHHH-HHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEEec-
Confidence 588999 999999999999999999999999999999999999876 678999999999999999654
Q ss_pred cCCCceeEEEeChhHHHHHhHcCCCcc
Q 041194 320 KAGGTINTCSIPGRWGPLLFLVPSQVE 346 (418)
Q Consensus 320 ~~~g~v~~~~mHdlv~d~a~~~~~~e~ 346 (418)
+|+..+|+|||+||+||+..+.++.
T Consensus 429 --~~~~~~~~~h~l~~~~~~~~~~~~~ 453 (1249)
T 3sfz_A 429 --NGKSFCYYLHDLQVDFLTEKNRSQL 453 (1249)
T ss_dssp --SSSSEEEECCHHHHHHHHHHTGGGH
T ss_pred --CCCceEEEecHHHHHHHHhhhhHHH
Confidence 3445689999999999999987763
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.97 E-value=1.1e-32 Score=295.39 Aligned_cols=241 Identities=19% Similarity=0.157 Sum_probs=183.8
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcce-eeeeecCCCCCCCHHHHHHHHHHH
Q 041194 84 DTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDC-HAWITEPYSNEYDADQILDIVIKF 162 (418)
Q Consensus 84 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~-~~wv~~~vs~~~~~~~ll~~il~~ 162 (418)
-.|||++++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|++ ++|++ +++.++...++..|+..
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs--Vs~~~d~~~IL~~Ll~l 205 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--LKNCNSPETVLEMLQKL 205 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE--CCCSSSHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE--eCCCCCHHHHHHHHHHH
Confidence 34999999999999998643 3789999999999999999999998788899987 89999 99999998888888775
Q ss_pred hCC---CCCcc-c---cccCCHHHHHHHHHHHh---ccCcEEEEEeccCCCc------------------ccccccccc-
Q 041194 163 LMP---SSRLS-E---IMDKNYEMKKIILHEYL---MTKRYLIVIDDFEDGE------------------NIRLDLVPT- 213 (418)
Q Consensus 163 l~~---~~~~~-~---~~~~~~~~l~~~l~~~L---~~kr~LlVLDDvp~~~------------------~Va~~~~~~- 213 (418)
++. ..... . ....+.+.+...+++.| .+||+||||||||+.. .++..+...
T Consensus 206 L~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~Va~~l~g~~ 285 (1221)
T 1vt4_I 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285 (1221)
T ss_dssp HHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHHHHHHHHHS
T ss_pred HhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhCCCeEEEEeccChHHHHhcCCCe
Confidence 432 11000 0 01123456677788876 6899999999994422 222111100
Q ss_pred c---c------ch---------------------hhhhccCcchhhcccch-hhh--hcccccc----cccccccccccC
Q 041194 214 G---G------PL---------------------RAIYKGCPFLLLYHGSI-SLE--ENIGEAV----QIPLVLRYFEYC 256 (418)
Q Consensus 214 ~---~------~~---------------------~~I~~GlPLAl~~ig~~-~~~--~~~~~~~----~i~~~L~~~sy~ 256 (418)
. . .. .+|++|+||||+++|+. +-. ....|.. .+..+| .+||+
T Consensus 286 vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aaL-elSYd 364 (1221)
T 1vt4_I 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII-ESSLN 364 (1221)
T ss_dssp SCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHHH-HHHHH
T ss_pred EEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHHH-HHHHH
Confidence 0 0 00 23349999999999998 511 1122322 789999 99999
Q ss_pred CCchhh-HhHhhhhccCCCCceechhHHHHHhHhcCCCCcChHHHHHHHHHHHHhccccccccccCCCceeEEEeChhHH
Q 041194 257 MSPFCL-KLCFLYLSVFPAHLEISTRQLYQLWIAEGFILDNSEATTESYLEQLIKEGFAEAKKRKAGGTINTCSIPGRWG 335 (418)
Q Consensus 257 ~L~~~l-k~cfl~~s~Fp~~~~i~~~~Li~~Wiaeg~i~~~~e~~a~~~l~~Lv~rsll~~~~~~~~g~v~~~~mHdlv~ 335 (418)
.||+++ |.||+|||+||+++.|+++.++.+|+++| ++.++.+|++|+++|||+... ....|+||||++
T Consensus 365 ~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d~-----~~~rYrMHDLll 433 (1221)
T 1vt4_I 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQP-----KESTISIPSIYL 433 (1221)
T ss_dssp HSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBCS-----SSSEEBCCCHHH
T ss_pred hCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEeC-----CCCEEEehHHHH
Confidence 999999 99999999999999999999999999997 245889999999999999842 125699999999
Q ss_pred HHHh
Q 041194 336 PLLF 339 (418)
Q Consensus 336 d~a~ 339 (418)
+++.
T Consensus 434 ELr~ 437 (1221)
T 1vt4_I 434 ELKV 437 (1221)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9764
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.96 E-value=7.7e-30 Score=267.50 Aligned_cols=250 Identities=17% Similarity=0.197 Sum_probs=186.2
Q ss_pred CCCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCC-CCCc-ceeeeeecCCCCCCCHHHHHH
Q 041194 80 SKSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYV-KHYF-DCHAWITEPYSNEYDADQILD 157 (418)
Q Consensus 80 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~-~~~F-~~~~wv~~~vs~~~~~~~ll~ 157 (418)
...+.+|||+.++++|.++|....+..++|+|+||||+||||||++++++.++ ..+| +.++|++ ++.. +...++.
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~--~~~~-~~~~~~~ 197 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS--VGKQ-DKSGLLM 197 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE--EESC-CHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE--CCCC-chHHHHH
Confidence 45678999999999999999875556899999999999999999999996544 7789 4789999 8765 3444444
Q ss_pred HH---HHHhCCCCCccccccCCHHHHHHHHHHHhcc--CcEEEEEeccCCCc------------------cccccccccc
Q 041194 158 IV---IKFLMPSSRLSEIMDKNYEMKKIILHEYLMT--KRYLIVIDDFEDGE------------------NIRLDLVPTG 214 (418)
Q Consensus 158 ~i---l~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~--kr~LlVLDDvp~~~------------------~Va~~~~~~~ 214 (418)
.+ +..++...........+.+.+...++..+.+ +++|||||||++.. .++..+....
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~~~~~~ 277 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPK 277 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTTCCSCE
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHhcCCCc
Confidence 43 4455532111112345678888899999987 79999999993211 1111111000
Q ss_pred -cc-----h------------------------hhhh---ccCcchhhcccch-hhh--------hccc---cc------
Q 041194 215 -GP-----L------------------------RAIY---KGCPFLLLYHGSI-SLE--------ENIG---EA------ 243 (418)
Q Consensus 215 -~~-----~------------------------~~I~---~GlPLAl~~ig~~-~~~--------~~~~---~~------ 243 (418)
.+ . .+|+ +|+||||..+|+. +-. +.+. +.
T Consensus 278 ~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~~l~~l~~~~~~~~~~~~ 357 (591)
T 1z6t_A 278 YVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSS 357 (591)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHHHHHHHHSCCCCCSSCCC
T ss_pred eEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHHHHHHHHHhHHHHhhhcc
Confidence 00 0 4566 9999999999987 411 1110 00
Q ss_pred ---c-cccccccccccCCCchhhHhHhhhhccCCCCceechhHHHHHhHhcCCCCcChHHHHHHHHHHHHhccccccccc
Q 041194 244 ---V-QIPLVLRYFEYCMSPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFILDNSEATTESYLEQLIKEGFAEAKKR 319 (418)
Q Consensus 244 ---~-~i~~~L~~~sy~~L~~~lk~cfl~~s~Fp~~~~i~~~~Li~~Wiaeg~i~~~~e~~a~~~l~~Lv~rsll~~~~~ 319 (418)
. .+..+| .+||+.||++.|.||++||+||+++.|+.+.+..+|.++ .+.++.++++|+++||++...
T Consensus 358 ~~~~~~l~~~l-~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll~~~~- 428 (591)
T 1z6t_A 358 SYDYEALDEAM-SISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCDR- 428 (591)
T ss_dssp SSCCHHHHHHH-HHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSSEEEE-
T ss_pred ccchHHHHHHH-HHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCeEEec-
Confidence 0 577889 999999999999999999999999999999999999775 456889999999999998644
Q ss_pred cCCCceeEEEeChhHHHHHhHcCC
Q 041194 320 KAGGTINTCSIPGRWGPLLFLVPS 343 (418)
Q Consensus 320 ~~~g~v~~~~mHdlv~d~a~~~~~ 343 (418)
+|....|+||+++|++++....
T Consensus 429 --~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 429 --NGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp --ETTEEEEECCHHHHHHHHHHTG
T ss_pred --CCCccEEEEcHHHHHHHHhhhh
Confidence 2344679999999999998743
No 5
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.96 E-value=1.6e-09 Score=107.41 Aligned_cols=113 Identities=14% Similarity=0.142 Sum_probs=83.3
Q ss_pred CCCCcccchhhHHHHHHHH-hc--CC--CCceEEEE--ECCCCCchHHHHHHHHhcCCCCCC-----cc-eeeeeecCCC
Q 041194 81 KSRDTVGLDDRMEKLLDLL-IE--GP--PQRSMVAI--LDSIGLDKTAFATEAYNSSYVKHY-----FD-CHAWITEPYS 147 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L-~~--~~--~~~~vi~I--~G~gGiGKTtLA~~v~~d~~~~~~-----F~-~~~wv~~~vs 147 (418)
.+..++||++++++|.++| .. .+ .....+.| +|++|+||||||+.+++. .... |+ ..+|++ ..
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~--~~ 95 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVN--AF 95 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEE--GG
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEE--CC
Confidence 3478999999999999998 42 11 23456666 999999999999999983 3221 22 246777 66
Q ss_pred CCCCHHHHHHHHHHHhCCCCCccccccCCHHHHHHHHHHHhc--cCcEEEEEecc
Q 041194 148 NEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM--TKRYLIVIDDF 200 (418)
Q Consensus 148 ~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVLDDv 200 (418)
...+...++..++.+++...+ ....+...+...+.+.+. +++++|||||+
T Consensus 96 ~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~ 147 (412)
T 1w5s_A 96 NAPNLYTILSLIVRQTGYPIQ---VRGAPALDILKALVDNLYVENHYLLVILDEF 147 (412)
T ss_dssp GCCSHHHHHHHHHHHHTCCCC---CTTCCHHHHHHHHHHHHHHHTCEEEEEEEST
T ss_pred CCCCHHHHHHHHHHHhCCCCC---CCCCCHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 777888999999999976432 123345666777777775 67999999999
No 6
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.84 E-value=8.5e-09 Score=101.06 Aligned_cols=113 Identities=12% Similarity=0.098 Sum_probs=86.2
Q ss_pred CCCCcccchhhHHHHHHHHhcC--CCCceEEEEECCCCCchHHHHHHHHhcCCCCCC------cceeeeeecCCCCCCCH
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEG--PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHY------FDCHAWITEPYSNEYDA 152 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~------F~~~~wv~~~vs~~~~~ 152 (418)
.+..++||+++++++.++|... ......+.|+|++|+||||||+.+++ ..... --..+|++ .....+.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~~~~~~~i~--~~~~~~~ 92 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLR--RLEARASSLGVLVKPIYVN--ARHRETP 92 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHH--HHHHHHHHHTCCEEEEEEE--TTTSCSH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHHhccCCCeEEEEEE--CCcCCCH
Confidence 3478999999999999998643 34567899999999999999999998 33221 12346788 7778888
Q ss_pred HHHHHHHHHHhCCCCCccccccCCHHHHHHHHHHHh--ccCcEEEEEecc
Q 041194 153 DQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYL--MTKRYLIVIDDF 200 (418)
Q Consensus 153 ~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L--~~kr~LlVLDDv 200 (418)
..++..++.+++...+ ....+..++...+.+.+ .+++.+|||||+
T Consensus 93 ~~~~~~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi 139 (387)
T 2v1u_A 93 YRVASAIAEAVGVRVP---FTGLSVGEVYERLVKRLSRLRGIYIIVLDEI 139 (387)
T ss_dssp HHHHHHHHHHHSCCCC---SSCCCHHHHHHHHHHHHTTSCSEEEEEEETT
T ss_pred HHHHHHHHHHhCCCCC---CCCCCHHHHHHHHHHHHhccCCeEEEEEccH
Confidence 9999999999976433 23345666677777777 356899999999
No 7
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.83 E-value=6.9e-09 Score=101.94 Aligned_cols=112 Identities=13% Similarity=0.033 Sum_probs=83.3
Q ss_pred CCCcccchhhHHHHHHHHhc--CCCCceEEEEECCCCCchHHHHHHHHhcCCCCC------Cc--ceeeeeecCCCCCC-
Q 041194 82 SRDTVGLDDRMEKLLDLLIE--GPPQRSMVAILDSIGLDKTAFATEAYNSSYVKH------YF--DCHAWITEPYSNEY- 150 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~------~F--~~~~wv~~~vs~~~- 150 (418)
+..++||+++++++.++|.. .....+.+.|+|++|+||||||+.+++ .... .+ ...+|++ .+...
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~i~--~~~~~~ 94 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFN--EIEEVKKEDEEYKDVKQAYVN--CREVGG 94 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHH--HHHHHHHHSSSSTTCEEEEEE--HHHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHhhhhcCCCCceEEEEE--CccCCC
Confidence 37899999999999988865 234466899999999999999999998 3311 11 2346776 65555
Q ss_pred CHHHHHHHHHHHhCC-CCCccccccCCHHHHHHHHHHHhccCcEEEEEecc
Q 041194 151 DADQILDIVIKFLMP-SSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 151 ~~~~ll~~il~~l~~-~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
+...++..++.++.. ... ....+...+...+.+.+..++.+|||||+
T Consensus 95 ~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~vlilDEi 142 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVP---KHGINLGEYIDKIKNGTRNIRAIIYLDEV 142 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCC---SSSSCTHHHHHHHHHHHSSSCEEEEEETT
T ss_pred CHHHHHHHHHHHhcCCCCC---CCCCCHHHHHHHHHHHhccCCCEEEEECH
Confidence 788899999988833 221 12344567777888888887779999999
No 8
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.80 E-value=4.2e-08 Score=96.31 Aligned_cols=112 Identities=15% Similarity=0.058 Sum_probs=84.2
Q ss_pred CCCcccchhhHHHHHHHHhcC----CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCc-ceeeeeecCCCCCCCHHHHH
Q 041194 82 SRDTVGLDDRMEKLLDLLIEG----PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF-DCHAWITEPYSNEYDADQIL 156 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F-~~~~wv~~~vs~~~~~~~ll 156 (418)
+..++||++++++|.+++... .+..+.+.|+|++|+||||||+.+++ ...... -..+|++ .+...+...++
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~--~~~~~~~~~~~ 91 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYIN--GFIYRNFTAII 91 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEE--TTTCCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEe--CccCCCHHHHH
Confidence 367999999999999998762 22334899999999999999999998 343321 2356777 77777888999
Q ss_pred HHHHHHhCCCCCccccccCCHHHHHHHHHHHhc--cCcEEEEEecc
Q 041194 157 DIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM--TKRYLIVIDDF 200 (418)
Q Consensus 157 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVLDDv 200 (418)
..++..++...+ ....+...+...+...+. +++.+||||++
T Consensus 92 ~~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~ 134 (389)
T 1fnn_A 92 GEIARSLNIPFP---RRGLSRDEFLALLVEHLRERDLYMFLVLDDA 134 (389)
T ss_dssp HHHHHHTTCCCC---SSCCCHHHHHHHHHHHHHHTTCCEEEEEETG
T ss_pred HHHHHHhCccCC---CCCCCHHHHHHHHHHHHhhcCCeEEEEEECc
Confidence 999999876432 123456666666766664 56889999998
No 9
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.78 E-value=1.3e-08 Score=98.30 Aligned_cols=107 Identities=11% Similarity=0.120 Sum_probs=76.3
Q ss_pred CCCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCC------CCHH
Q 041194 80 SKSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNE------YDAD 153 (418)
Q Consensus 80 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~------~~~~ 153 (418)
..+..++||++++++|.+++..+ +++.|+|++|+|||||++++.+. .. .+|++ .... .+..
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~--~~-----~~~~~--~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNE--RP-----GILID--CRELYAERGHITRE 75 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHH--SS-----EEEEE--HHHHHHTTTCBCHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHH--cC-----cEEEE--eecccccccCCCHH
Confidence 45567999999999999998763 68999999999999999999984 21 56776 5432 2566
Q ss_pred HHHHHHHHHhCCC---------------CCccccccCCHHHHHHHHHHHhcc-CcEEEEEecc
Q 041194 154 QILDIVIKFLMPS---------------SRLSEIMDKNYEMKKIILHEYLMT-KRYLIVIDDF 200 (418)
Q Consensus 154 ~ll~~il~~l~~~---------------~~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVLDDv 200 (418)
.++..+...+... ...+ ....+..++...+.+.... ++++|||||+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~ 137 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLE-PRKLSLREVFRELNDLGEELGEFIVAFDEA 137 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSC-GGGCCHHHHHHHHHHHHHHHSCEEEEEETG
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeec-cccchHHHHHHHHHHHHhccCCEEEEEeCH
Confidence 6777776665430 0000 1124566677777776654 4999999999
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.73 E-value=7.2e-09 Score=101.44 Aligned_cols=113 Identities=15% Similarity=0.122 Sum_probs=82.3
Q ss_pred CCCCcccchhhHHHHHHHHhcC--CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCc---ceeeeeecCCCCCCCHHHH
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEG--PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF---DCHAWITEPYSNEYDADQI 155 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F---~~~~wv~~~vs~~~~~~~l 155 (418)
.+..++||+++++.|.+++... ......+.|+|++|+||||||+.+++ .....+ ...+|++ .....+...+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~--~~~~~~~~~~ 93 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYIN--TRQIDTPYRV 93 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEE--HHHHCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEE--CCCCCCHHHH
Confidence 3478999999999999998752 34467899999999999999999998 343322 1345776 5555677788
Q ss_pred HHHHHHHhCCCCCccccccCCHHHHHHHHHHHhc--cCcEEEEEecc
Q 041194 156 LDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM--TKRYLIVIDDF 200 (418)
Q Consensus 156 l~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVLDDv 200 (418)
+..++.+++.... ....+..++...+.+.+. +++.+||||++
T Consensus 94 ~~~i~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~ 137 (386)
T 2qby_A 94 LADLLESLDVKVP---FTGLSIAELYRRLVKAVRDYGSQVVIVLDEI 137 (386)
T ss_dssp HHHHTTTTSCCCC---SSSCCHHHHHHHHHHHHHTCCSCEEEEEETH
T ss_pred HHHHHHHhCCCCC---CCCCCHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 8888888765332 123345666666666665 45899999998
No 11
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.53 E-value=1.7e-07 Score=90.49 Aligned_cols=107 Identities=12% Similarity=0.097 Sum_probs=68.3
Q ss_pred CCCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCC-----CCHHH
Q 041194 80 SKSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNE-----YDADQ 154 (418)
Q Consensus 80 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~-----~~~~~ 154 (418)
..+..++||+++++.|.+ +.. +++.|+|++|+|||||++.+.+. .... .+|++ .... .+...
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~~---~~~~~--~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE--LNLP---YIYLD--LRKFEERNYISYKD 76 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH--HTCC---EEEEE--GGGGTTCSCCCHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh--cCCC---EEEEE--chhhccccCCCHHH
Confidence 355679999999999999 654 59999999999999999999984 3322 46777 5432 34455
Q ss_pred HHHHHHHHhC-------------CCC-C--ccc----c-----ccCCHHHHHHHHHHHhccCcEEEEEecc
Q 041194 155 ILDIVIKFLM-------------PSS-R--LSE----I-----MDKNYEMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 155 ll~~il~~l~-------------~~~-~--~~~----~-----~~~~~~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
++..+...+. ... . .+. . .......+...+.+.-. ++++|||||+
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~ 146 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEA 146 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETG
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECH
Confidence 5554444331 000 0 000 0 12344555555554332 4999999999
No 12
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.38 E-value=8.8e-07 Score=84.88 Aligned_cols=110 Identities=10% Similarity=0.090 Sum_probs=75.2
Q ss_pred cccchhhHHHHHHHHhcC--CCCceEEEEECCCCCchHHHHHHHHhcCCCC---C---CcceeeeeecCCCCCCCHHHHH
Q 041194 85 TVGLDDRMEKLLDLLIEG--PPQRSMVAILDSIGLDKTAFATEAYNSSYVK---H---YFDCHAWITEPYSNEYDADQIL 156 (418)
Q Consensus 85 ~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~---~---~F~~~~wv~~~vs~~~~~~~ll 156 (418)
+.|||++.++|...|... +.....+-|+|++|+|||++|+.|.+.-.-. . .| ..+.++ ...-.+...++
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~IN--c~~~~t~~~~~ 98 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHID--ALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEE--TTCCC--HHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEe--ccccCCHHHHH
Confidence 789999999999888763 4457788999999999999999999842111 1 22 245666 56667888999
Q ss_pred HHHHHHhCCCCCccccccCCHHHHHHHHHHH--hccCcEEEEEecc
Q 041194 157 DIVIKFLMPSSRLSEIMDKNYEMKKIILHEY--LMTKRYLIVIDDF 200 (418)
Q Consensus 157 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~--L~~kr~LlVLDDv 200 (418)
..|++++.+... ......+.+...+... -.++.++++||++
T Consensus 99 ~~I~~~L~g~~~---~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~ 141 (318)
T 3te6_A 99 EKIWFAISKENL---CGDISLEALNFYITNVPKAKKRKTLILIQNP 141 (318)
T ss_dssp HHHHHHHSCCC-----CCCCHHHHHHHHHHSCGGGSCEEEEEEECC
T ss_pred HHHHHHhcCCCC---CchHHHHHHHHHHHHhhhccCCceEEEEecH
Confidence 999999976432 1222334444444432 2457899999987
No 13
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.30 E-value=1.9e-06 Score=75.01 Aligned_cols=47 Identities=17% Similarity=0.311 Sum_probs=40.1
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.-..++|+++.++++.+++.... ...+.|+|.+|+|||+||+.+++.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999997643 456789999999999999999883
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.22 E-value=2.3e-06 Score=76.37 Aligned_cols=46 Identities=20% Similarity=0.181 Sum_probs=39.3
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+++|+++.++.+.+++.... ...+.|+|.+|+|||+||+.+++
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH
Confidence 34568999999999999998764 23389999999999999999988
No 15
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.13 E-value=5.1e-06 Score=74.98 Aligned_cols=47 Identities=21% Similarity=0.186 Sum_probs=40.2
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 82 SRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..+++|+++.++.|.+++..+. ....+.|+|++|+||||||+.+++.
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999997653 2358899999999999999999883
No 16
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.08 E-value=6.6e-06 Score=71.39 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=39.9
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.-..++|++++++.+.+.+.... ...+.|+|.+|+||||||+.+++.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred ccchhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999997643 456789999999999999999873
No 17
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=97.99 E-value=4.3e-06 Score=67.83 Aligned_cols=44 Identities=25% Similarity=0.409 Sum_probs=29.6
Q ss_pred ChHHHHHHHHHHHHHHHhhhhhccccCCC---C---chHHHHHHHHHHHH
Q 041194 1 MDEINCFTYESEKVIDTFINSITQQKSQS---S---CSKDICDALQGLQS 44 (418)
Q Consensus 1 l~~lr~~ayd~ED~lD~~~~~~~~~~~~~---~---~~~~i~~~i~~l~~ 44 (418)
++|||++|||+|||||+|.++........ + ++++++..+++++.
T Consensus 61 ~~~vrdlaYD~ED~iD~f~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~ 110 (115)
T 3qfl_A 61 ADEVRELSYVIEDVVDKFLVQVDGIKSDDNNNKFKGLMKRTTELLKKVKH 110 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcccccchHHHHHHHHHHHHhhhHH
Confidence 47999999999999999999987543221 2 23355555555543
No 18
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.92 E-value=1.4e-05 Score=75.97 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=39.0
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+++|++..++.|.+++..+. ...+.|+|++|+||||+|+.+++
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~ 64 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAH 64 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH
Confidence 4578999999999999998764 22389999999999999999998
No 19
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.75 E-value=6e-05 Score=66.79 Aligned_cols=59 Identities=15% Similarity=0.032 Sum_probs=38.2
Q ss_pred CCcccch----hhHHHHHHHHhcCCCC--ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 83 RDTVGLD----DRMEKLLDLLIEGPPQ--RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 83 ~~~vGr~----~~~~~l~~~L~~~~~~--~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
.++++.+ ...+.+.+++...... ...+.|+|.+|+|||+||+.+++ .........+|++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~ 89 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVY 89 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEE
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE
Confidence 3455543 3445556666544221 26889999999999999999998 4433333455666
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.73 E-value=4.1e-05 Score=71.73 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=39.8
Q ss_pred CCCCCcccchhhHHHHHHHHhcC-----------CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 80 SKSRDTVGLDDRMEKLLDLLIEG-----------PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 80 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..-.+++|.++.+++|.+.+... -...+-+.|+|++|+|||+||+.+++
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 34567899999999999887431 13356789999999999999999998
No 21
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.59 E-value=7.7e-05 Score=70.93 Aligned_cols=46 Identities=20% Similarity=0.249 Sum_probs=39.7
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|+++.++.|.+++..+. ...+.++|++|+||||+|+.+++
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~ 68 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALAR 68 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH
Confidence 34579999999999999998764 33489999999999999999998
No 22
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.58 E-value=9.6e-05 Score=68.09 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=36.8
Q ss_pred CCCcccchhhHHHHHHHHhc---CC-------CCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIE---GP-------PQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~---~~-------~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|.++.++.|.+++.. .. ...+-+.|+|++|+|||+||+.+++
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45789999888888776532 11 2345688999999999999999998
No 23
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.51 E-value=0.00041 Score=67.27 Aligned_cols=48 Identities=27% Similarity=0.270 Sum_probs=38.0
Q ss_pred CCCcccchhhHHH---HHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 82 SRDTVGLDDRMEK---LLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 82 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..+++|++..++. +.+.+..+....+.+.|+|++|+|||+||+.+.+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999988776 45555555434568999999999999999999984
No 24
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.51 E-value=0.00029 Score=66.82 Aligned_cols=47 Identities=28% Similarity=0.264 Sum_probs=38.5
Q ss_pred CCCcccchhhHHHHHHHHhc-----------CCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIE-----------GPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|.++.+++|.+++.. +-...+.+.|+|++|+|||+||+.+++
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH
Confidence 34689999999998888753 113456789999999999999999999
No 25
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.49 E-value=0.00022 Score=68.28 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=39.4
Q ss_pred CCCCCcccchhhHHHHHHHHhc----------CCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 80 SKSRDTVGLDDRMEKLLDLLIE----------GPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 80 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..-.+++|.++.++.|.+.+.. .....+-+.++|++|+|||+||+.+++
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3446789999999999998731 122346789999999999999999998
No 26
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.45 E-value=0.00046 Score=66.13 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=38.4
Q ss_pred CCCCcccchhhHHHHHHHHhc---------C-CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIE---------G-PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~---------~-~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|.++.++.|.+.+.. + ....+-+.++|++|+|||+||+.+++
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHH
Confidence 345789999999999887742 1 12346789999999999999999998
No 27
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.40 E-value=0.00027 Score=72.26 Aligned_cols=49 Identities=16% Similarity=0.113 Sum_probs=41.0
Q ss_pred CCCCcccchhhHHHHHHHHhcC---------------CCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEG---------------PPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~---------------~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.-.+++|++..+++|.+||... .+..+.+.|+|++|+||||||+.+++.
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999751 013578999999999999999999993
No 28
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.39 E-value=0.00027 Score=66.53 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=39.0
Q ss_pred CCCCcccchhhHHHHHHHHhcC----------CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEG----------PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|.+..++.|.+++... ....+.+.|+|++|+||||||+.+++
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3457899999999999887431 12356789999999999999999998
No 29
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.37 E-value=0.00062 Score=64.89 Aligned_cols=48 Identities=17% Similarity=0.093 Sum_probs=40.8
Q ss_pred CCCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 80 SKSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 80 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..-.+++|.++.++.|.+++..+. ...++.+.|++|+|||++|+.+.+
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHH
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHH
Confidence 345689999999999999998653 346788889999999999999998
No 30
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.36 E-value=0.00046 Score=63.56 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=35.7
Q ss_pred CCCCcccchhhHHHHHHHHhc---C-------CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIE---G-------PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|.++.++++.+.+.. . ....+-+.|+|++|+||||||+.+.+
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 345789998888877665432 1 11234588999999999999999998
No 31
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.36 E-value=0.00046 Score=66.91 Aligned_cols=47 Identities=21% Similarity=0.186 Sum_probs=39.8
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 82 SRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-.+++|+++.++.|.+++..+. ....+.|+|++|+||||+|+.+.+.
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHH
T ss_pred hhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999997653 2347889999999999999999873
No 32
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.34 E-value=0.00022 Score=67.89 Aligned_cols=48 Identities=19% Similarity=0.190 Sum_probs=39.2
Q ss_pred CCCCcccchhhHHHHHHHHhcC---CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEG---PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|++..++.+.+++... ......+.|+|++|+|||+||+.+++
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999998888631 22346788999999999999999998
No 33
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.34 E-value=0.00024 Score=69.13 Aligned_cols=47 Identities=11% Similarity=0.090 Sum_probs=38.8
Q ss_pred CCCcccchhhHHHHHHHHhc----------CCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIE----------GPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|.+..++.|.+.+.. .....+-+.|+|++|+|||+||+.+++
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999988753 112456789999999999999999998
No 34
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.29 E-value=0.00045 Score=59.90 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=29.6
Q ss_pred chhhHHHHHHHHhcCC-CCceEEEEECCCCCchHHHHHHHHh
Q 041194 88 LDDRMEKLLDLLIEGP-PQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 88 r~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+..+.+.+++..-. .....+.|+|++|+||||||+.+++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3444555555554422 2357899999999999999999988
No 35
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.28 E-value=0.00033 Score=70.32 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=39.5
Q ss_pred CCCCCcccchhhH---HHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 80 SKSRDTVGLDDRM---EKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 80 ~~~~~~vGr~~~~---~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..-.+++|.+..+ ..|...+..+. ...+.|+|.+|+||||||+.+.+
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHH
Confidence 3456789998888 77888887765 46789999999999999999998
No 36
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.27 E-value=0.00017 Score=60.53 Aligned_cols=46 Identities=11% Similarity=0.041 Sum_probs=36.1
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 84 DTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 84 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
+++|.+..++++.+.+..-.....-|.|+|.+|+|||++|+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999988642222345789999999999999999984
No 37
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.26 E-value=0.0003 Score=66.53 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=35.9
Q ss_pred CcccchhhHHHHHHHHhcC-------------CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 84 DTVGLDDRMEKLLDLLIEG-------------PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 84 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+++|.++.++.|.+++... ......+.|+|.+|+|||+||+.+.+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 5799999999888776421 23455789999999999999998877
No 38
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.25 E-value=0.00066 Score=65.96 Aligned_cols=48 Identities=23% Similarity=0.257 Sum_probs=38.1
Q ss_pred CCCCcccchhhHHHHHHHHhc----------CCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIE----------GPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|.++.++.|.+.+.. .....+-|.++|++|+|||+||+.+++
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 345789999999999988732 112234588999999999999999999
No 39
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.24 E-value=0.00036 Score=69.89 Aligned_cols=93 Identities=20% Similarity=0.244 Sum_probs=53.3
Q ss_pred Ccc-cchhh--HHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcce--eeeeecCCCCCCCHHHHHHH
Q 041194 84 DTV-GLDDR--MEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDC--HAWITEPYSNEYDADQILDI 158 (418)
Q Consensus 84 ~~v-Gr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~--~~wv~~~vs~~~~~~~ll~~ 158 (418)
.|+ |.... ...+......... ...+.|+|.+|+||||||+.+++ .+...|.. .++++ ...+..+
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~--------~~~~~~~ 174 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYIT--------SEKFLND 174 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEE--------HHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEee--------HHHHHHH
Confidence 455 64333 3344444433332 67889999999999999999998 44333322 23444 3334445
Q ss_pred HHHHhCCCCCccccccCCHHHHHHHHHHHhccCcEEEEEecc
Q 041194 159 VIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 159 il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
+...+.... . ..+.+.+..+.-+|+|||+
T Consensus 175 ~~~~~~~~~---------~----~~~~~~~~~~~~vL~IDEi 203 (440)
T 2z4s_A 175 LVDSMKEGK---------L----NEFREKYRKKVDILLIDDV 203 (440)
T ss_dssp HHHHHHTTC---------H----HHHHHHHTTTCSEEEEECG
T ss_pred HHHHHHccc---------H----HHHHHHhcCCCCEEEEeCc
Confidence 554443211 1 1233444436779999998
No 40
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.18 E-value=0.00064 Score=66.83 Aligned_cols=48 Identities=21% Similarity=0.194 Sum_probs=39.0
Q ss_pred CCCCcccchhhHHHHHHHHhcC----------CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEG----------PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|.+..++.|.+++... ....+-+.|+|.+|+|||+||+.+.+
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999987321 12346789999999999999999998
No 41
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.10 E-value=0.0009 Score=63.84 Aligned_cols=37 Identities=24% Similarity=0.165 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 92 MEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 92 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+..++.........+.|+|++|+||||||+.+++
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4445555544433456789999999999999999998
No 42
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.10 E-value=0.0013 Score=61.08 Aligned_cols=48 Identities=17% Similarity=0.109 Sum_probs=36.4
Q ss_pred CCCcccchhhHHHHHHH-------Hhc-CCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 82 SRDTVGLDDRMEKLLDL-------LIE-GPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~-------L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
...++|.+...+++.+. +.. ......-+.|+|++|+|||+||+.+++.
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34678888877776663 322 2345678899999999999999999983
No 43
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.07 E-value=0.00086 Score=72.79 Aligned_cols=46 Identities=17% Similarity=0.383 Sum_probs=39.1
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-..++||++++.++++.|.... ..-+.++|.+|+||||||+.+.+
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHH
T ss_pred CCcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 34578999999999999997753 33468999999999999999987
No 44
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.07 E-value=0.0021 Score=57.19 Aligned_cols=88 Identities=11% Similarity=0.044 Sum_probs=51.4
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCC-------Cccc-cccCC
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSS-------RLSE-IMDKN 176 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~-------~~~~-~~~~~ 176 (418)
.-.++.|+|.+|+||||||..+.. . .=...+|++ ....++..++.. ++..++... .... ....+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVD--TEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKE 90 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEE--SSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEE--CCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHH
Confidence 356999999999999999999987 1 113467887 665556655443 333332210 0000 01112
Q ss_pred HHHHHHHHHHHhccCcEEEEEecc
Q 041194 177 YEMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 177 ~~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
.......++..+..+.-+||+|..
T Consensus 91 ~~~~~~~~~~l~~~~~~lliiD~~ 114 (220)
T 2cvh_A 91 QRRVIGSLKKTVDSNFALVVVDSI 114 (220)
T ss_dssp HHHHHHHHHHHCCTTEEEEEEECC
T ss_pred HHHHHHHHHHHhhcCCCEEEEcCc
Confidence 233445555555445779999985
No 45
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.04 E-value=0.00097 Score=67.63 Aligned_cols=92 Identities=15% Similarity=0.187 Sum_probs=58.8
Q ss_pred CCcccchhhHHHHHHHHhcC-----------CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCC
Q 041194 83 RDTVGLDDRMEKLLDLLIEG-----------PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYD 151 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~ 151 (418)
.+++|.+..+++|.+++... -...+-+.|+|.+|+|||+||+.+.+ .....| +.++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~--~~~~~f---v~vn-------- 270 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLIN-------- 270 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH--HCSSEE---EEEE--------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH--HhCCCE---EEEE--------
Confidence 46899999999998887532 23455689999999999999999998 443222 2233
Q ss_pred HHHHHHHHHHHhCCCCCccccccCCHHHHHHHHHHHhccCcEEEEEecc
Q 041194 152 ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 152 ~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
... +...+ .......+...+.....++..+|+||++
T Consensus 271 ~~~----l~~~~---------~g~~~~~~~~~f~~A~~~~p~iLfLDEI 306 (489)
T 3hu3_A 271 GPE----IMSKL---------AGESESNLRKAFEEAEKNAPAIIFIDEL 306 (489)
T ss_dssp HHH----HHTSC---------TTHHHHHHHHHHHHHHHTCSEEEEEESH
T ss_pred chH----hhhhh---------cchhHHHHHHHHHHHHhcCCcEEEecch
Confidence 111 11111 1112233344455555667889999998
No 46
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.02 E-value=0.00051 Score=65.45 Aligned_cols=67 Identities=15% Similarity=0.186 Sum_probs=45.9
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCC--CCCCCHHHHHHHHHHHhCCCCCccccccCCHHHHHHH
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPY--SNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKII 183 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~v--s~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~ 183 (418)
-+++.|+|++|+||||||.++... .-...+|++ . ....+. ...+.+.....
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs--~~~eE~v~~--------------------~~~~le~~l~~ 175 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYAT--VRFGEPLSG--------------------YNTDFNVFVDD 175 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEE--EEBSCSSTT--------------------CBCCHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEE--ecchhhhhh--------------------hhcCHHHHHHH
Confidence 467789999999999999999873 112345777 5 222110 11345666677
Q ss_pred HHHHhccCcEEEEEecc
Q 041194 184 LHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 184 l~~~L~~kr~LlVLDDv 200 (418)
+.+.+...+ +||+|++
T Consensus 176 i~~~l~~~~-LLVIDsI 191 (331)
T 2vhj_A 176 IARAMLQHR-VIVIDSL 191 (331)
T ss_dssp HHHHHHHCS-EEEEECC
T ss_pred HHHHHhhCC-EEEEecc
Confidence 777777767 9999997
No 47
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.99 E-value=0.00085 Score=71.81 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=39.2
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-..++||+++++++++.|.... ..-+.++|.+|+||||+|+.+.+
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHH
Confidence 34578999999999999997653 34568999999999999999987
No 48
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.99 E-value=0.00038 Score=66.74 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=40.3
Q ss_pred CCCCcccchhhHHHHHHHHhcC---CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEG---PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|++..++++..++... ......+.|+|++|+|||+||+.+.+
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 4457899999999999998752 33456689999999999999999988
No 49
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.98 E-value=0.0013 Score=70.73 Aligned_cols=51 Identities=16% Similarity=0.211 Sum_probs=40.4
Q ss_pred CCcccchhhHHHHHHHHhc-----------CCCCceEEEEECCCCCchHHHHHHHHhcCCCCCC
Q 041194 83 RDTVGLDDRMEKLLDLLIE-----------GPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHY 135 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~ 135 (418)
.+++|.++.+++|.+++.. .-.....|.|+|.+|+||||||+.+.+ .....
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~--~l~~~ 265 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAF 265 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH--TTTCE
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH--HcCCc
Confidence 5689999999999988753 113456799999999999999999998 44433
No 50
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.0011 Score=65.01 Aligned_cols=52 Identities=19% Similarity=0.223 Sum_probs=39.9
Q ss_pred CCcccchhhHHHHHHHHhc-----------CCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCc
Q 041194 83 RDTVGLDDRMEKLLDLLIE-----------GPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF 136 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F 136 (418)
.++.|.++.+++|.+.+.- +-...+=|.++|++|+|||.||+.+++ +....|
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f 210 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF 210 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc
Confidence 4667899999988887642 123457788999999999999999999 554444
No 51
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.0013 Score=65.34 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=40.2
Q ss_pred CCcccchhhHHHHHHHHhc----C-------CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCc
Q 041194 83 RDTVGLDDRMEKLLDLLIE----G-------PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF 136 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F 136 (418)
.++.|.++.+++|.+.+.. . -...+=|.++|++|+|||.||+.+++ +....|
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f 243 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNATF 243 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCCE
Confidence 4678899999998877532 1 24567889999999999999999999 444433
No 52
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.94 E-value=0.00099 Score=66.76 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=38.5
Q ss_pred CCCCcccchhhHHHHHHHHhc----------CCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIE----------GPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|.++.++.|.+.+.. .....+-+.++|++|+|||+||+.+++
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999988731 112356789999999999999999999
No 53
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.0016 Score=64.67 Aligned_cols=52 Identities=23% Similarity=0.229 Sum_probs=40.5
Q ss_pred CCcccchhhHHHHHHHHhc-----------CCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCc
Q 041194 83 RDTVGLDDRMEKLLDLLIE-----------GPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF 136 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F 136 (418)
.++.|.++.+++|.+.+.. +-...+=|.++|++|+|||+||+.+++ .....|
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~--~~~~~~ 234 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN--STKAAF 234 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH--HHTCEE
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCCe
Confidence 4678899999998887642 124567789999999999999999999 544443
No 54
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.90 E-value=0.00082 Score=67.81 Aligned_cols=45 Identities=16% Similarity=0.319 Sum_probs=38.4
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-..++|++++++.+++.|.... ..-+.++|.+|+|||+||+.+.+
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999997643 33457999999999999999988
No 55
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.90 E-value=0.0023 Score=68.44 Aligned_cols=92 Identities=14% Similarity=0.178 Sum_probs=59.1
Q ss_pred CCcccchhhHHHHHHHHhc----C-------CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCC
Q 041194 83 RDTVGLDDRMEKLLDLLIE----G-------PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYD 151 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~ 151 (418)
.++.|.++.+++|.+++.- . -...+-|.++|++|+|||+||+.+++ +...+| +.|+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~~~---~~v~-------- 270 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLIN-------- 270 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTCEE---EEEE--------
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCeE---EEEE--------
Confidence 4577899999888887532 1 13467899999999999999999999 554443 3344
Q ss_pred HHHHHHHHHHHhCCCCCccccccCCHHHHHHHHHHHhccCcEEEEEecc
Q 041194 152 ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 152 ~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
..+ ++ ... .......+...+.........+|++|++
T Consensus 271 ~~~----l~----sk~-----~gese~~lr~lF~~A~~~~PsIIfIDEi 306 (806)
T 3cf2_A 271 GPE----IM----SKL-----AGESESNLRKAFEEAEKNAPAIIFIDEL 306 (806)
T ss_dssp HHH----HH----SSC-----TTHHHHHHHHHHHHHTTSCSEEEEEESG
T ss_pred hHH----hh----ccc-----chHHHHHHHHHHHHHHHcCCeEEEEehh
Confidence 111 11 111 1122334444455555567889999998
No 56
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.89 E-value=0.0019 Score=64.34 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=40.3
Q ss_pred CCcccchhhHHHHHHHHhc-----------CCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCc
Q 041194 83 RDTVGLDDRMEKLLDLLIE-----------GPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF 136 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F 136 (418)
.++.|.++.+++|.+.+.. +-...+=|.++|++|+|||+||+.+++ +....|
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~~ 243 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGANF 243 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE
Confidence 4677899999888887642 113467899999999999999999999 444433
No 57
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.86 E-value=0.00022 Score=59.77 Aligned_cols=46 Identities=13% Similarity=0.061 Sum_probs=33.8
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 83 RDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+++|.+..++++.+.+..-.....-|.|+|.+|+|||++|+.+++
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCC
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHH
Confidence 4678999999999888764211233477999999999999999988
No 58
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.0017 Score=64.72 Aligned_cols=52 Identities=25% Similarity=0.273 Sum_probs=40.5
Q ss_pred CCcccchhhHHHHHHHHhc-----------CCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCc
Q 041194 83 RDTVGLDDRMEKLLDLLIE-----------GPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF 136 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F 136 (418)
.++.|.++.+++|.+.+.- +-...+=|.++|++|+|||+||+.+++ +....|
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f 271 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF 271 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe
Confidence 4678899999999886532 124577889999999999999999999 554444
No 59
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.82 E-value=0.00098 Score=63.99 Aligned_cols=46 Identities=13% Similarity=0.066 Sum_probs=39.3
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|+++.++.|..++..+.. ..+.++|++|+||||+|+.+.+
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999977642 2288999999999999999988
No 60
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.74 E-value=0.0028 Score=63.90 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=36.2
Q ss_pred CCCCcccchhhHHHHHHHHhc---C-------CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIE---G-------PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|.++.++++.+.+.. . -...+-+.|+|++|+|||+||+.+.+
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 345689999888887776532 1 11234588999999999999999998
No 61
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.68 E-value=0.0014 Score=62.31 Aligned_cols=40 Identities=13% Similarity=0.300 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHhcCCC-CceEEEEECCCCCchHHHHHHHHh
Q 041194 89 DDRMEKLLDLLIEGPP-QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 89 ~~~~~~l~~~L~~~~~-~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
....+.+.+++..... ....+.|+|.+|+|||+||+.+++
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 3344455566654322 246788999999999999999998
No 62
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.67 E-value=0.0038 Score=60.46 Aligned_cols=88 Identities=22% Similarity=0.151 Sum_probs=56.4
Q ss_pred CCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCc-cccccCCHHHHHH
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRL-SEIMDKNYEMKKI 182 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~-~~~~~~~~~~l~~ 182 (418)
+.-.++.|+|.+|+||||||.++... ....=..++|++ ....++.. .++.++..... .-....+.++...
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId--~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~ 129 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFID--AEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALE 129 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEE--SSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEe--cccccchH-----HHHHcCCchhhhhhhhccCHHHHHH
Confidence 34579999999999999999999873 211112357888 66666654 44555543211 0023445667766
Q ss_pred HHHHHhc-cCcEEEEEecc
Q 041194 183 ILHEYLM-TKRYLIVIDDF 200 (418)
Q Consensus 183 ~l~~~L~-~kr~LlVLDDv 200 (418)
.+...++ .+.-++|+|.+
T Consensus 130 ~~~~l~~~~~~dlvVIDSi 148 (356)
T 3hr8_A 130 IVDELVRSGVVDLIVVDSV 148 (356)
T ss_dssp HHHHHHHTSCCSEEEEECT
T ss_pred HHHHHhhhcCCCeEEehHh
Confidence 6666654 45568999987
No 63
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.63 E-value=0.0016 Score=57.98 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=29.2
Q ss_pred hHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 91 RMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 91 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.++|.+.+........+|+|+|..|+|||||++.+..
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44555555554334568999999999999999999987
No 64
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.60 E-value=0.012 Score=52.89 Aligned_cols=93 Identities=11% Similarity=0.102 Sum_probs=53.5
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCC----CcceeeeeecCCCCCCCHHHHHHHHHHHhCCCC-----CccccccC
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKH----YFDCHAWITEPYSNEYDADQILDIVIKFLMPSS-----RLSEIMDK 175 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~----~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~-----~~~~~~~~ 175 (418)
.-.++.|+|.+|+|||||+..+........ .-...+|++ ....++...+. .+++.++... ...-....
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~--~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID--TEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE--SSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE--CCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecC
Confidence 356999999999999999999987322211 124578888 65555555443 3444554321 00001122
Q ss_pred CHHHH---HHHHHHHhc-cCcEEEEEecc
Q 041194 176 NYEMK---KIILHEYLM-TKRYLIVIDDF 200 (418)
Q Consensus 176 ~~~~l---~~~l~~~L~-~kr~LlVLDDv 200 (418)
+.++. ...+.+.+. .+.-+||+|.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~ 128 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSA 128 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCc
Confidence 33332 333555554 46779999985
No 65
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.59 E-value=0.0017 Score=58.28 Aligned_cols=58 Identities=9% Similarity=0.011 Sum_probs=37.8
Q ss_pred CCCcccc---hhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 82 SRDTVGL---DDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 82 ~~~~vGr---~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
-.+++|. +...+.+..++... ....+.|+|++|+||||||+.+++ ..........|++
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~ 87 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIP 87 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEE
T ss_pred hhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE
Confidence 3456763 34555566655543 357889999999999999999988 3322222345666
No 66
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.59 E-value=0.0017 Score=61.27 Aligned_cols=25 Identities=12% Similarity=0.128 Sum_probs=22.4
Q ss_pred CCceEEEEECCCCCchHHHHHHHHh
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+.+.++|++|+|||+||+.+++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456888999999999999999999
No 67
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.59 E-value=0.0013 Score=60.82 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=34.8
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 83 RDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..++|.+..+.++.+.+..-......+.|+|.+|+|||+||+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 45789999999988877642222356779999999999999999983
No 68
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.55 E-value=0.011 Score=56.38 Aligned_cols=93 Identities=18% Similarity=0.153 Sum_probs=56.9
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCC----cceeeeeecCCCCCCCHHHHHHHHHHHhCCCCC-----ccccccC
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHY----FDCHAWITEPYSNEYDADQILDIVIKFLMPSSR-----LSEIMDK 175 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~----F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~-----~~~~~~~ 175 (418)
.-.++.|+|.+|+||||||.++......... =...+|++ ....++..++.+ +++.++.+.. ..-....
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~--~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID--TEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE--SSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE--CCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCC
Confidence 4569999999999999999998874222211 13568998 777777776654 3455544210 0001122
Q ss_pred CHH---HHHHHHHHHhc--cCcEEEEEecc
Q 041194 176 NYE---MKKIILHEYLM--TKRYLIVIDDF 200 (418)
Q Consensus 176 ~~~---~l~~~l~~~L~--~kr~LlVLDDv 200 (418)
+.+ ++...+...++ .+--+||+|.+
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 333 34455565654 35678999975
No 69
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.54 E-value=0.0025 Score=56.41 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=33.6
Q ss_pred chhhHHHHHHHHhcC-CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 88 LDDRMEKLLDLLIEG-PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 88 r~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
|++.+++|.+.+... .....+|+|+|..|+|||||++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 556778888888764 34568999999999999999999876
No 70
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0039 Score=61.61 Aligned_cols=52 Identities=19% Similarity=0.210 Sum_probs=40.0
Q ss_pred CCcccchhhHHHHHHHHhc----C-------CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCc
Q 041194 83 RDTVGLDDRMEKLLDLLIE----G-------PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF 136 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F 136 (418)
.++.|.++.+++|.+.+.. . -...+=|.++|++|+|||.||+++++ +....|
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f 244 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF 244 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE
Confidence 4667899999888887642 1 13467899999999999999999999 544443
No 71
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.52 E-value=0.0013 Score=61.74 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=37.4
Q ss_pred CCcccchhhHHHHHHHHhcC------------CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 83 RDTVGLDDRMEKLLDLLIEG------------PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..++|.++.++.|...+... .....-+.++|.+|+|||++|+.+.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999887641 12245678999999999999999998
No 72
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.52 E-value=0.0014 Score=61.86 Aligned_cols=45 Identities=20% Similarity=0.184 Sum_probs=38.1
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|++..++.|.+++..+. ...+.++|++|+|||++|+.+.+
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHH
Confidence 4568999999999999887653 33389999999999999999988
No 73
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.51 E-value=0.0015 Score=62.80 Aligned_cols=47 Identities=21% Similarity=0.158 Sum_probs=37.0
Q ss_pred CCCcccchhhHHHHHHHHhcC---CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIEG---PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-..++|.+..++.+...+..+ +.....+.++|++|+||||||+.+.+
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred HHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 346788887777777776543 23456789999999999999999998
No 74
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.48 E-value=0.011 Score=56.91 Aligned_cols=94 Identities=10% Similarity=0.024 Sum_probs=56.2
Q ss_pred CCceEEEEECCCCCchHHHHHHHHhcCCCCC----CcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCC-----cccccc
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYNSSYVKH----YFDCHAWITEPYSNEYDADQILDIVIKFLMPSSR-----LSEIMD 174 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~----~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~-----~~~~~~ 174 (418)
+.-.++.|+|.+|+||||||..+........ .=...+|++ ....++..++.. ++..++.... ..-...
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~--~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~ 196 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID--TENTFRPDRLRD-IADRFNVDHDAVLDNVLYARA 196 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE--SSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE--CCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeec
Confidence 4567999999999999999999887422211 113577998 777777776654 3444443210 000011
Q ss_pred CC---HHHHHHHHHHHhc---cCcEEEEEecc
Q 041194 175 KN---YEMKKIILHEYLM---TKRYLIVIDDF 200 (418)
Q Consensus 175 ~~---~~~l~~~l~~~L~---~kr~LlVLDDv 200 (418)
.+ ..++...+.+.+. .+--+||+|.+
T Consensus 197 ~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl 228 (343)
T 1v5w_A 197 YTSEHQMELLDYVAAKFHEEAGIFKLLIIDSI 228 (343)
T ss_dssp CSTTHHHHHHHHHHHHHHHSCSSEEEEEEETS
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCccEEEEech
Confidence 12 2233444555554 45669999975
No 75
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.45 E-value=0.0055 Score=57.01 Aligned_cols=50 Identities=18% Similarity=0.219 Sum_probs=35.4
Q ss_pred CCCCCcccchhhHHHHHHHHhc--C-------C-CCceEEEEECCCCCchHHHHHHHHhc
Q 041194 80 SKSRDTVGLDDRMEKLLDLLIE--G-------P-PQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 80 ~~~~~~vGr~~~~~~l~~~L~~--~-------~-~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..-.+++|.++.++++.+.... . + .-.+-+.|+|.+|+||||||+.+.+.
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 3445788988887777665432 1 0 11122899999999999999999983
No 76
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.45 E-value=0.0058 Score=59.28 Aligned_cols=87 Identities=15% Similarity=0.013 Sum_probs=53.5
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCc-cccccCCHHHHHHH
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRL-SEIMDKNYEMKKII 183 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~-~~~~~~~~~~l~~~ 183 (418)
.-+++.|.|.+|+||||||..+..... ..=...+|++ ....++... +..++..... .-....+.+++...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid--~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~ 132 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFID--AEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEI 132 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEE--SSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEe--CCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHH
Confidence 456999999999999999998876321 1112467888 776666432 3445432210 00122345666665
Q ss_pred HHHHhc-cCcEEEEEecc
Q 041194 184 LHEYLM-TKRYLIVIDDF 200 (418)
Q Consensus 184 l~~~L~-~kr~LlVLDDv 200 (418)
++...+ .+--+||+|.+
T Consensus 133 ~~~l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 133 CDALARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHHHHTCCSEEEEECG
T ss_pred HHHHHhccCCCEEEEcCH
Confidence 555443 34559999987
No 77
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.43 E-value=0.0025 Score=68.18 Aligned_cols=45 Identities=16% Similarity=0.319 Sum_probs=38.7
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-..++|++++++++.+.|.... ..-+.++|.+|+|||++|+.+.+
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999998753 23468999999999999999987
No 78
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.40 E-value=0.0072 Score=58.82 Aligned_cols=87 Identities=16% Similarity=0.095 Sum_probs=55.3
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCC-ccccccCCHHHHHHH
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSR-LSEIMDKNYEMKKII 183 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~-~~~~~~~~~~~l~~~ 183 (418)
.-.++.|.|.+|+||||||..+.... ...=..++|++ ....++.. .++.++.+.. ..-....+.+++...
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~--~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~ 143 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFID--AEHALDPV-----YARALGVNTDELLVSQPDNGEQALEI 143 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEE--SSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEE--CCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHH
Confidence 35688999999999999999887632 11112578998 77666654 2445544221 000123456777777
Q ss_pred HHHHhcc-CcEEEEEecc
Q 041194 184 LHEYLMT-KRYLIVIDDF 200 (418)
Q Consensus 184 l~~~L~~-kr~LlVLDDv 200 (418)
+....+. +--+||+|.+
T Consensus 144 l~~l~~~~~~~lVVIDsl 161 (366)
T 1xp8_A 144 MELLVRSGAIDVVVVDSV 161 (366)
T ss_dssp HHHHHTTTCCSEEEEECT
T ss_pred HHHHHhcCCCCEEEEeCh
Confidence 7766653 4559999988
No 79
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.38 E-value=0.016 Score=55.16 Aligned_cols=93 Identities=12% Similarity=0.131 Sum_probs=57.4
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCC---------Cc-----ceeeeeecCCCCCCCHHHHHHHHHHHhCCCCC--
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKH---------YF-----DCHAWITEPYSNEYDADQILDIVIKFLMPSSR-- 168 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~---------~F-----~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~-- 168 (418)
.-.++.|+|.+|+||||||.++........ .. ...+|++ ....++..++.+. ++.++.+..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~--~e~~~~~~~l~~~-~~~~g~~~~~~ 173 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYID--TEGTFRPERIMQM-AEHAGIDGQTV 173 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEE--SSSCCCHHHHHHH-HHHHTCCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEE--CCCCCCHHHHHHH-HHHcCCCHHHH
Confidence 457999999999999999999886422211 11 3568998 7777777776643 455544210
Q ss_pred ---ccccccCCHH---HHHHHHHHHhcc--CcEEEEEecc
Q 041194 169 ---LSEIMDKNYE---MKKIILHEYLMT--KRYLIVIDDF 200 (418)
Q Consensus 169 ---~~~~~~~~~~---~l~~~l~~~L~~--kr~LlVLDDv 200 (418)
..-....+.+ ++...+.+.+.. +--+||+|.+
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0001123333 244456666543 4569999976
No 80
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.36 E-value=0.0016 Score=62.68 Aligned_cols=45 Identities=9% Similarity=-0.029 Sum_probs=36.7
Q ss_pred CCCcccchhhHHHHHHHH-hcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLL-IEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L-~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|.+..++.+.+++ ..+. ... +.|+|+.|+||||+|+.+.+
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHH
T ss_pred HHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHH
Confidence 356899999999999888 4443 233 89999999999999999877
No 81
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.34 E-value=0.002 Score=59.54 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=37.1
Q ss_pred CCCCcccchhhHHHHHHHHhc----------CCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 81 KSRDTVGLDDRMEKLLDLLIE----------GPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.-.+++|.++.++.|.+.+.. +....+-+.|+|++|+|||+||+.+++.
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 345799999988888887642 1112334779999999999999999983
No 82
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.31 E-value=0.0025 Score=60.47 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=38.1
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 83 RDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..++|.+..+.++.+.+..-......|.|+|.+|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 46899999999999988763223456779999999999999999984
No 83
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.27 E-value=0.0032 Score=61.04 Aligned_cols=45 Identities=16% Similarity=0.140 Sum_probs=36.0
Q ss_pred CcccchhhHHHHHHHHh-------------cCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 84 DTVGLDDRMEKLLDLLI-------------EGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 84 ~~vGr~~~~~~l~~~L~-------------~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.++|.+..++.|...+. ........+.++|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 36899999999888873 1112356789999999999999999998
No 84
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.25 E-value=0.0023 Score=55.08 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=20.8
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999998
No 85
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.25 E-value=0.0063 Score=61.68 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=37.1
Q ss_pred CCCCCcccchhhHHHHHHHHhc--CC--------CCceEEEEECCCCCchHHHHHHHHhc
Q 041194 80 SKSRDTVGLDDRMEKLLDLLIE--GP--------PQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 80 ~~~~~~vGr~~~~~~l~~~L~~--~~--------~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..-.+++|.++.+.++.+.... .. .-.+-+.|+|++|+||||||+.+.+.
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4556799999888877776532 10 11233899999999999999999983
No 86
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.24 E-value=0.0022 Score=54.58 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=19.4
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+|.|.|++|+||||+|+.+ .
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~ 22 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-K 22 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-H
T ss_pred cEEEEECCCCCCHHHHHHHH-H
Confidence 47999999999999999999 5
No 87
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.20 E-value=0.0052 Score=57.85 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=23.6
Q ss_pred CCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 102 GPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 102 ~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
......+|+|+|..|+||||||+.+..
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999999998876
No 88
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.17 E-value=0.0028 Score=59.67 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=36.9
Q ss_pred CcccchhhHHHHHHHHhcC-------CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 84 DTVGLDDRMEKLLDLLIEG-------PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 84 ~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.++|.+..++.|...+... ......+.++|.+|+|||++|+.+++
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH
Confidence 5689999998888887653 12245899999999999999999998
No 89
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.13 E-value=0.011 Score=57.00 Aligned_cols=87 Identities=18% Similarity=0.093 Sum_probs=54.1
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCc-cccccCCHHHHHHH
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRL-SEIMDKNYEMKKII 183 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~-~~~~~~~~~~l~~~ 183 (418)
.-.++.|+|.+|+||||||.++... ....=...+|++ ....++.. .++.++..... .-....+.++....
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~--~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~ 130 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFID--AEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEI 130 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEE--SSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEE--CCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 4569999999999999999998763 211112467888 77666653 24455532210 00123356666666
Q ss_pred HHHHhcc-CcEEEEEecc
Q 041194 184 LHEYLMT-KRYLIVIDDF 200 (418)
Q Consensus 184 l~~~L~~-kr~LlVLDDv 200 (418)
+...... +.-+||+|.+
T Consensus 131 ~~~l~~~~~~~lIVIDsl 148 (349)
T 2zr9_A 131 ADMLVRSGALDIIVIDSV 148 (349)
T ss_dssp HHHHHTTTCCSEEEEECG
T ss_pred HHHHHhcCCCCEEEEcCh
Confidence 6655543 4569999987
No 90
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.09 E-value=0.003 Score=53.74 Aligned_cols=22 Identities=9% Similarity=0.042 Sum_probs=20.5
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 91
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.09 E-value=0.0061 Score=61.14 Aligned_cols=48 Identities=19% Similarity=0.126 Sum_probs=37.1
Q ss_pred CCCcccchhhHHHHHHHH---hcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 82 SRDTVGLDDRMEKLLDLL---IEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..+++|.++.++.+..++ ..+....+-+.++|++|+|||+||+.+.+.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 468999999888655544 344333456889999999999999999983
No 92
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.06 E-value=0.0045 Score=59.39 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=37.4
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|.+..++.|..++..+. ..-+.++|++|+||||+|+.+.+
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 3567898888899988887764 22389999999999999999988
No 93
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.00 E-value=0.0039 Score=53.46 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=20.7
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999987
No 94
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.99 E-value=0.0039 Score=54.18 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|++|+|||||++.+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999988
No 95
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.98 E-value=0.021 Score=53.81 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.6
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+++++|.+|+||||++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998876
No 96
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.93 E-value=0.0041 Score=54.78 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.++|.|+|++|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 97
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.92 E-value=0.0054 Score=58.50 Aligned_cols=42 Identities=21% Similarity=0.190 Sum_probs=36.8
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 83 RDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..++|.++.++.+...+..+. -+.++|.+|+|||+||+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHHHH
Confidence 468999999999988887653 578999999999999999998
No 98
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.92 E-value=0.022 Score=54.06 Aligned_cols=84 Identities=7% Similarity=0.072 Sum_probs=53.4
Q ss_pred EEEEECCCCCchHHHHHHHHhcCCCCCCc--ceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCc-cccccCCHHHH-HHH
Q 041194 108 MVAILDSIGLDKTAFATEAYNSSYVKHYF--DCHAWITEPYSNEYDADQILDIVIKFLMPSSRL-SEIMDKNYEMK-KII 183 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d~~~~~~F--~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~-~~~~~~~~~~l-~~~ 183 (418)
++-|.|.+|+||||||.++... ....+ ...+|++ ....++.. .++.++.+... .-....+.++. ...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId--~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i 100 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYD--SEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDM 100 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEE--SSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEe--ccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHH
Confidence 7899999999999999888763 22221 2467998 77777654 36677654321 01223455555 433
Q ss_pred HHHH--h-ccCcEEEEEecc
Q 041194 184 LHEY--L-MTKRYLIVIDDF 200 (418)
Q Consensus 184 l~~~--L-~~kr~LlVLDDv 200 (418)
+... + .++.-|||+|-|
T Consensus 101 ~~~l~~i~~~~~~lvVIDSI 120 (333)
T 3io5_A 101 VNQLDAIERGEKVVVFIDSL 120 (333)
T ss_dssp HHHHHTCCTTCCEEEEEECS
T ss_pred HHHHHHhhccCceEEEEecc
Confidence 3332 2 356789999988
No 99
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.91 E-value=0.041 Score=54.70 Aligned_cols=38 Identities=16% Similarity=0.089 Sum_probs=28.3
Q ss_pred hHHHHHHHHhcC-------CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 91 RMEKLLDLLIEG-------PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 91 ~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.++|.++|... ....++|.++|.+|+||||+|..+..
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345566666432 13478999999999999999988876
No 100
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.87 E-value=0.0044 Score=53.74 Aligned_cols=23 Identities=13% Similarity=0.316 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999987
No 101
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.87 E-value=0.0036 Score=53.49 Aligned_cols=22 Identities=9% Similarity=0.261 Sum_probs=20.7
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+|+|+|+.|+|||||++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999988
No 102
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.86 E-value=0.035 Score=52.49 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=31.3
Q ss_pred cchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 87 GLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 87 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
|-++.++.|.+.+..+. .....++|+.|+||||+|+.+.+
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHH
Confidence 34566777777777665 67889999999999999999987
No 103
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.85 E-value=0.0085 Score=55.83 Aligned_cols=48 Identities=23% Similarity=0.176 Sum_probs=33.3
Q ss_pred CCCCcccchhhHHHHHHHHhc---C-------C-CCceEEEEECCCCCchHHHHHHHHh
Q 041194 81 KSRDTVGLDDRMEKLLDLLIE---G-------P-PQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~---~-------~-~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.++.|.++.+++|.+.+.. . + .-.+=+.++|++|+||||||+.+..
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 345678888888888776421 1 0 1112299999999999999999998
No 104
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.81 E-value=0.044 Score=52.00 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=36.5
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHH
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKF 162 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~ 162 (418)
.-.++.|.|.+|+||||||..+..+...++ ...+|++ .. .+..++...++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~s--lE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHS--LE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEE--SS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEE--CC--CCHHHHHHHHHHH
Confidence 346899999999999999999876422222 4567776 43 5566666666654
No 105
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.79 E-value=0.0058 Score=53.82 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=21.6
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|+|+|+.|+||||||+.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999987
No 106
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.79 E-value=0.005 Score=53.28 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 107
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.74 E-value=0.024 Score=50.40 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.9
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|.+|+|||||++.+..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999985
No 108
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.74 E-value=0.0052 Score=53.23 Aligned_cols=22 Identities=9% Similarity=0.145 Sum_probs=20.5
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
++|.|.|++|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 109
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.73 E-value=0.011 Score=55.58 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=28.1
Q ss_pred hHHHHHHHHhcC---CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 91 RMEKLLDLLIEG---PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 91 ~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..++++..++.. .....+|.|.|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 334444444433 24567999999999999999999987
No 110
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.72 E-value=0.048 Score=51.34 Aligned_cols=90 Identities=13% Similarity=-0.017 Sum_probs=45.9
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCC-CCCCHHHHHHHHHHHhCCCCCccccccCCHHHHHHHH
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYS-NEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIIL 184 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs-~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l 184 (418)
..+++++|.+|+||||++..+... ....=....++. .. +.+...+.++......+.+-- +.....+..++....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~--~D~~r~~a~~ql~~~~~~~~v~v~-~~~~~~~p~~~~~~~ 172 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVG--ADVYRPAALEQLQQLGQQIGVPVY-GEPGEKDVVGIAKRG 172 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEE--CCCSSSHHHHHHHHHHHHHTCCEE-CCTTCCCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEe--cCCCCHHHHHHHHHHhccCCeEEE-ecCCCCCHHHHHHHH
Confidence 679999999999999999988762 211111234444 22 222233334444544443210 000123444444333
Q ss_pred HHHhccCcE-EEEEecc
Q 041194 185 HEYLMTKRY-LIVIDDF 200 (418)
Q Consensus 185 ~~~L~~kr~-LlVLDDv 200 (418)
.+.++.+.| ++++|-.
T Consensus 173 l~~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 173 VEKFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHHHTTCSEEEEECC
T ss_pred HHHHHhCCCCEEEEeCC
Confidence 444432333 6777753
No 111
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.71 E-value=0.0089 Score=58.17 Aligned_cols=46 Identities=13% Similarity=0.141 Sum_probs=35.7
Q ss_pred CCcccchhhHHHHHHHHhc----------------------------CCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 83 RDTVGLDDRMEKLLDLLIE----------------------------GPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~----------------------------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..++|.++.++.|...+.. .......+.++|++|+|||++|+.+.+
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 3578999988888877720 011245688999999999999999998
No 112
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.71 E-value=0.0061 Score=52.95 Aligned_cols=23 Identities=9% Similarity=0.150 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999987
No 113
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.68 E-value=0.0065 Score=52.07 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+|+|+|+.|+||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 114
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.67 E-value=0.0046 Score=54.46 Aligned_cols=23 Identities=9% Similarity=0.195 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|.|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 115
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.67 E-value=0.0055 Score=56.04 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=34.3
Q ss_pred CCCCcccchhhHHHHHHHHhc--C-------C-CCceEEEEECCCCCchHHHHHHHHhc
Q 041194 81 KSRDTVGLDDRMEKLLDLLIE--G-------P-PQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~--~-------~-~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.-.+++|.++.+.++.+.... . + .-.+-+.|+|.+|+||||||+.+.+.
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 345688988777776665431 1 0 11122899999999999999999983
No 116
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.66 E-value=0.0059 Score=52.83 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=20.7
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 117
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.66 E-value=0.062 Score=52.79 Aligned_cols=93 Identities=9% Similarity=0.059 Sum_probs=51.4
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCC----CcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCC-----ccccccC
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKH----YFDCHAWITEPYSNEYDADQILDIVIKFLMPSSR-----LSEIMDK 175 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~----~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~-----~~~~~~~ 175 (418)
.-.++.|+|.+|+|||||+..+.-...... .-...+|++ ....++...+. .+++.++.... ..-....
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid--~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID--TEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE--SSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEe--CCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccC
Confidence 456999999999999999997753212111 123478888 65556655543 35555554211 0001122
Q ss_pred CHHH---HHHHHHHHhc-cCcEEEEEecc
Q 041194 176 NYEM---KKIILHEYLM-TKRYLIVIDDF 200 (418)
Q Consensus 176 ~~~~---l~~~l~~~L~-~kr~LlVLDDv 200 (418)
+.+. ....+...+. .+--+||+|.+
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~ 282 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSV 282 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETG
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecch
Confidence 2222 2233333333 35678899974
No 118
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.62 E-value=0.0092 Score=60.52 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=36.8
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 83 RDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..++|.++.++.+...+..+. -+.++|.+|+|||+||+.+.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHHH
Confidence 357899999998888887663 6789999999999999999983
No 119
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.61 E-value=0.0063 Score=53.27 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=20.0
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999988
No 120
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.60 E-value=0.0071 Score=55.42 Aligned_cols=25 Identities=4% Similarity=0.125 Sum_probs=22.2
Q ss_pred CCceEEEEECCCCCchHHHHHHHHh
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
....+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999987
No 121
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.59 E-value=0.0072 Score=53.07 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999999987
No 122
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.58 E-value=0.0072 Score=52.51 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=20.4
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999976
No 123
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.57 E-value=0.011 Score=52.53 Aligned_cols=23 Identities=9% Similarity=0.276 Sum_probs=21.6
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|+|+|+.|+|||||++.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 56899999999999999999998
No 124
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.56 E-value=0.052 Score=51.85 Aligned_cols=39 Identities=18% Similarity=0.172 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 89 DDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 89 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
++..+.+.+.+..+. -...+.++|+.|+||||+|+.+.+
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~ 46 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSR 46 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHH
Confidence 455667777776553 345788999999999999999987
No 125
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.55 E-value=0.013 Score=56.47 Aligned_cols=43 Identities=26% Similarity=0.284 Sum_probs=32.4
Q ss_pred ccchhhHHHHHHHHhcC--CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 86 VGLDDRMEKLLDLLIEG--PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 86 vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
|+.+.-.+++++.+... ......|.|+|++|+||||+++.+..
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 45566667777776532 33466799999999999999998877
No 126
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.54 E-value=0.0073 Score=53.18 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|+|+|+.|+|||||++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999999987
No 127
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.51 E-value=0.0076 Score=57.37 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=20.4
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+.+||+|.|-|||||||.|..+.-
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHH
Confidence 579999999999999997766544
No 128
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.51 E-value=0.0075 Score=55.46 Aligned_cols=22 Identities=18% Similarity=0.087 Sum_probs=20.5
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
++|.|+|++|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5789999999999999999987
No 129
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.51 E-value=0.0081 Score=52.77 Aligned_cols=23 Identities=9% Similarity=0.273 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|+|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 130
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.50 E-value=0.0082 Score=52.06 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|.|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 131
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.49 E-value=0.0065 Score=52.36 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.++|.|+|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 46789999999999999999987
No 132
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.47 E-value=0.022 Score=53.98 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+|+|+|.+|+||||++..+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 467999999999999999998887
No 133
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.47 E-value=0.0083 Score=52.50 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=22.9
Q ss_pred CCceEEEEECCCCCchHHHHHHHHh
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
....+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999999998
No 134
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.46 E-value=0.008 Score=53.20 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=21.8
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+|+|+|..|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 135
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.46 E-value=0.0072 Score=51.95 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|..|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999998554
No 136
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.46 E-value=0.011 Score=54.15 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHhcC---CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 89 DDRMEKLLDLLIEG---PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 89 ~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+...+.++..+..+ .....+|.|+|++|+||||+|+.+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33445555555543 24567999999999999999999987
No 137
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.45 E-value=0.04 Score=52.67 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=22.0
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+++|+|..|+||||+++.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999886
No 138
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.45 E-value=0.0066 Score=53.23 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=20.2
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999987
No 139
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.44 E-value=0.009 Score=51.88 Aligned_cols=24 Identities=21% Similarity=0.154 Sum_probs=21.8
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
....|.|+|+.|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999988
No 140
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.43 E-value=0.0071 Score=53.20 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=20.4
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 141
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.43 E-value=0.0088 Score=52.83 Aligned_cols=24 Identities=17% Similarity=0.182 Sum_probs=22.1
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+|+|+|.+|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 142
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.43 E-value=0.0068 Score=53.55 Aligned_cols=24 Identities=8% Similarity=0.196 Sum_probs=21.8
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..++|.|+|++|+|||||++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 143
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.42 E-value=0.0083 Score=51.03 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=21.0
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 144
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.41 E-value=0.0098 Score=52.26 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=22.1
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+|+|.|+.|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999987
No 145
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.41 E-value=0.0068 Score=52.04 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=20.2
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+.|.|.|++|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 146
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.40 E-value=0.0068 Score=52.78 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=20.6
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 147
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.40 E-value=0.016 Score=55.27 Aligned_cols=43 Identities=12% Similarity=0.168 Sum_probs=30.6
Q ss_pred ccchhhHHHHHHHHhcC--CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 86 VGLDDRMEKLLDLLIEG--PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 86 vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+|-...+..+...+... .....+|+|.|..|+||||||+.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34344444455444443 34577999999999999999999876
No 148
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.39 E-value=0.013 Score=53.43 Aligned_cols=37 Identities=11% Similarity=-0.009 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 92 MEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 92 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..++.............|.|.|++|+||||+|+.+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 15 LNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp HHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3344443333233567899999999999999999987
No 149
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.39 E-value=0.0079 Score=57.51 Aligned_cols=47 Identities=17% Similarity=0.085 Sum_probs=34.1
Q ss_pred CCCCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 81 KSRDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 81 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.-.+++|.+..++.+...+.... ..-+.|+|.+|+|||+||+.+.+.
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred CchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHh
Confidence 34468999886666554444322 223889999999999999999983
No 150
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.38 E-value=0.0071 Score=50.88 Aligned_cols=24 Identities=8% Similarity=0.101 Sum_probs=21.8
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-..+.|+|..|+|||||++.+++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999983
No 151
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.38 E-value=0.0085 Score=53.58 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=20.7
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 152
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.38 E-value=0.038 Score=54.83 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=21.7
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+|.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988875
No 153
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.36 E-value=0.015 Score=51.73 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 89 DDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 89 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
++..+.+.+.+... ....|+|+|.+|+|||||+..+...
T Consensus 23 ~~~a~~~r~~~~~~--~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 23 KRLADKNRKLLNKH--GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHHHT--TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 33444555554433 4788999999999999999999874
No 154
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.36 E-value=0.0095 Score=52.54 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=20.3
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 155
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.35 E-value=0.0087 Score=52.05 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|.|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 156
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.33 E-value=0.0092 Score=51.82 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=20.0
Q ss_pred EEEEECCCCCchHHHHHHHHhc
Q 041194 108 MVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.++|+|..|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 157
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.31 E-value=0.01 Score=51.27 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...|.+.|++|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 158
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.29 E-value=0.0072 Score=52.01 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=17.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 159
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.28 E-value=0.012 Score=51.10 Aligned_cols=24 Identities=25% Similarity=0.183 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+|.|.|++|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 160
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.28 E-value=0.01 Score=52.21 Aligned_cols=23 Identities=22% Similarity=0.115 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999988
No 161
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.28 E-value=0.0073 Score=52.19 Aligned_cols=22 Identities=9% Similarity=0.126 Sum_probs=20.2
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 162
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.27 E-value=0.055 Score=53.81 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=21.6
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+|.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999888876
No 163
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.26 E-value=0.011 Score=54.59 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 164
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.25 E-value=0.0083 Score=51.11 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=20.4
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
++|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 165
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.24 E-value=0.036 Score=55.57 Aligned_cols=103 Identities=15% Similarity=0.203 Sum_probs=60.9
Q ss_pred HHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCC-CHHHHHHHHHHHhCCC------
Q 041194 94 KLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEY-DADQILDIVIKFLMPS------ 166 (418)
Q Consensus 94 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~-~~~~ll~~il~~l~~~------ 166 (418)
+.++.|..-. .-.-++|.|..|+|||+|++.+.++. .+.+-+..+++- ++... ...++.+++...=...
T Consensus 154 rvID~l~pig-kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~--iGER~rEv~e~~~~~~~~~~l~~~~l~~ 229 (498)
T 1fx0_B 154 KVVNLLAPYR-RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGG--VGERTREGNDLYMEMKESGVINEQNIAE 229 (498)
T ss_dssp TTHHHHSCCC-TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEE--ESCCSHHHHHHHHHHHHTTSSCSSTTCC
T ss_pred eEeeeecccc-cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEE--cccCcHHHHHHHHhhhcccccccccccc
Confidence 3556665422 23457999999999999999998831 223346677777 77655 5567777776541111
Q ss_pred -CCc--cccccC------CHHHHHHHHHHHhc---cCcEEEEEecc
Q 041194 167 -SRL--SEIMDK------NYEMKKIILHEYLM---TKRYLIVIDDF 200 (418)
Q Consensus 167 -~~~--~~~~~~------~~~~l~~~l~~~L~---~kr~LlVLDDv 200 (418)
... ...... -.....-.+.++++ ++.+||++||+
T Consensus 230 ~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 230 SKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp CCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 000 000111 11222334556664 58999999998
No 166
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.21 E-value=0.01 Score=51.39 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=19.9
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 167
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.21 E-value=0.013 Score=52.00 Aligned_cols=41 Identities=24% Similarity=0.210 Sum_probs=30.5
Q ss_pred cchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 87 GLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 87 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
+.++..+.+.+.+... ...+|+|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445555565555433 3789999999999999999998873
No 168
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.20 E-value=0.0048 Score=55.75 Aligned_cols=86 Identities=10% Similarity=-0.099 Sum_probs=46.5
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccccccCCHHHHHHHHH
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILH 185 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 185 (418)
-.++.|+|..|+||||++..+.+..... .... +.+. ... +.. ....+++.++..... .......++.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~-g~kV-li~~--~~~--d~r-~~~~i~srlG~~~~~--~~~~~~~~i~~~i~ 82 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYA-DVKY-LVFK--PKI--DTR-SIRNIQSRTGTSLPS--VEVESAPEILNYIM 82 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT-TCCE-EEEE--ECC--CGG-GCSSCCCCCCCSSCC--EEESSTHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhc-CCEE-EEEE--ecc--Cch-HHHHHHHhcCCCccc--cccCCHHHHHHHHH
Confidence 5789999999999999988877632111 1222 2332 111 111 112334444432211 12234455666666
Q ss_pred HHhccCcE-EEEEecc
Q 041194 186 EYLMTKRY-LIVIDDF 200 (418)
Q Consensus 186 ~~L~~kr~-LlVLDDv 200 (418)
+.+.+.++ +||+|.+
T Consensus 83 ~~~~~~~~dvViIDEa 98 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEV 98 (223)
T ss_dssp STTSCTTCCEEEECSG
T ss_pred HHhhCCCCCEEEEecC
Confidence 65555555 9999986
No 169
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.18 E-value=0.027 Score=56.23 Aligned_cols=65 Identities=17% Similarity=0.249 Sum_probs=43.1
Q ss_pred HHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCC-CHHHHHHHHHHH
Q 041194 94 KLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEY-DADQILDIVIKF 162 (418)
Q Consensus 94 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~-~~~~ll~~il~~ 162 (418)
+.++.|..-. .-.-++|.|..|+|||+|++.+.++. .+.+-+..+++- ++... .+.++.+++...
T Consensus 142 r~ID~l~pig-kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~--iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAG--VGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEE--ESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEE--CCCcchHHHHHHHHhhhc
Confidence 4566665421 13468999999999999999998731 123335566776 76654 456777777654
No 170
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.17 E-value=0.0097 Score=51.88 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|+|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999988
No 171
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.17 E-value=0.011 Score=50.06 Aligned_cols=21 Identities=5% Similarity=0.041 Sum_probs=19.8
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 172
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.16 E-value=0.011 Score=51.14 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|+|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 173
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.16 E-value=0.0089 Score=52.71 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=20.5
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.++++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999999976
No 174
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.13 E-value=0.013 Score=51.54 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=21.6
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+|.|.|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 175
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.13 E-value=0.011 Score=53.76 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|+|+|+.|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999995
No 176
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.11 E-value=0.059 Score=53.35 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=21.7
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+++|+|.+|+||||++..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998887
No 177
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.10 E-value=0.035 Score=53.51 Aligned_cols=94 Identities=11% Similarity=0.131 Sum_probs=52.1
Q ss_pred CCceEEEEECCCCCchHHHHHHHHhcCCCCCCc---ce-eeeeecCCCCCCCHHHHHHHHHHHhCCCCC-----cccccc
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF---DC-HAWITEPYSNEYDADQILDIVIKFLMPSSR-----LSEIMD 174 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F---~~-~~wv~~~vs~~~~~~~ll~~il~~l~~~~~-----~~~~~~ 174 (418)
+.-.++.|+|.+|+|||||+..+.......... .. .+|++ ....+...++ ..+....+.... ..-...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~--~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~ 205 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID--TENTFRPERI-REIAQNRGLDPDEVLKHIYVARA 205 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEE--SSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEe--CCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEec
Confidence 346799999999999999999998732111111 23 38888 5444444433 334443332110 000011
Q ss_pred ---CCHHHHHHHHHHHhc------cCcEEEEEecc
Q 041194 175 ---KNYEMKKIILHEYLM------TKRYLIVIDDF 200 (418)
Q Consensus 175 ---~~~~~l~~~l~~~L~------~kr~LlVLDDv 200 (418)
....++...+...+. .+.=+||+|.+
T Consensus 206 ~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ 240 (349)
T 1pzn_A 206 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSL 240 (349)
T ss_dssp CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETS
T ss_pred CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCc
Confidence 112334455555554 36779999975
No 178
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.08 E-value=0.022 Score=55.02 Aligned_cols=37 Identities=19% Similarity=0.128 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 92 MEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 92 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..++.+.+........+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4555666654445678999999999999999998865
No 179
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.02 E-value=0.015 Score=53.00 Aligned_cols=24 Identities=4% Similarity=0.148 Sum_probs=21.7
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+|+|.|..|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999877
No 180
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.01 E-value=0.014 Score=55.43 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=22.5
Q ss_pred CCceEEEEECCCCCchHHHHHHHHh
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
....+|+|+|..|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4567999999999999999999877
No 181
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.00 E-value=0.013 Score=51.94 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999987
No 182
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.99 E-value=0.027 Score=56.36 Aligned_cols=63 Identities=11% Similarity=0.148 Sum_probs=37.1
Q ss_pred HHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCC-CHHHHHHHHHH
Q 041194 95 LLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEY-DADQILDIVIK 161 (418)
Q Consensus 95 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~-~~~~ll~~il~ 161 (418)
.++.|..-.. -..++|+|.+|+|||||++.+..+.... .-+..+++- +++.. ...++..++..
T Consensus 141 ~ID~L~pi~k-Gq~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~--iGerttev~el~~~l~~ 204 (473)
T 1sky_E 141 VVDLLAPYIK-GGKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAG--VGERTREGNDLYHEMKD 204 (473)
T ss_dssp HHHHHSCEET-TCEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEE--ESSCHHHHHHHHHHHHH
T ss_pred HHHHHhhhcc-CCEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEee--eccCchHHHHHHHHhhh
Confidence 4555543211 2358899999999999999988742211 113345555 55544 34455555543
No 183
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.98 E-value=0.0076 Score=58.73 Aligned_cols=34 Identities=18% Similarity=0.077 Sum_probs=25.2
Q ss_pred HHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 94 KLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 94 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
++++.+..-. .-..++|+|.+|+|||||++.+.+
T Consensus 163 raID~~~pi~-rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 163 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp HHHHHHSCCB-TTCEEEEECCSSSSHHHHHHHHHH
T ss_pred eeeeeeeeec-CCcEEEEecCCCCChhHHHHHHHH
Confidence 4445554422 235789999999999999998876
No 184
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.98 E-value=0.079 Score=52.74 Aligned_cols=64 Identities=20% Similarity=0.070 Sum_probs=40.3
Q ss_pred HHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHh
Q 041194 94 KLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFL 163 (418)
Q Consensus 94 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l 163 (418)
.|-+++ .+=..-.++.|.|.+|+||||||..+..+...... ..++|++ . ..+..++...++...
T Consensus 189 ~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-~~vl~~s--l--E~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 189 ELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG-VGVGIYS--L--EMPAAQLTLRMMCSE 252 (444)
T ss_dssp HHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEE--S--SSCHHHHHHHHHHHH
T ss_pred hhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEE--C--CCCHHHHHHHHHHHH
Confidence 343444 33233468999999999999999998874222111 2456766 4 345667777766543
No 185
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.98 E-value=0.022 Score=56.70 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=39.1
Q ss_pred CCcccchhhHHHHHHHHhcC------------CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCc
Q 041194 83 RDTVGLDDRMEKLLDLLIEG------------PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF 136 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F 136 (418)
..++|.++.++.|...+... +...+-|.++|++|+||||+|+.+.. .....|
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~--~l~~~~ 78 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK--LANAPF 78 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH--HTTCCE
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH--HcCCCc
Confidence 46789999888887776321 11345688999999999999999998 454444
No 186
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.97 E-value=0.013 Score=51.65 Aligned_cols=23 Identities=4% Similarity=0.042 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 187
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.96 E-value=0.016 Score=51.04 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=22.3
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999987
No 188
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.94 E-value=0.093 Score=52.81 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=22.0
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+++|+|.+|+|||||++.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 467999999999999999999987
No 189
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.94 E-value=0.013 Score=51.65 Aligned_cols=23 Identities=4% Similarity=-0.098 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 190
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.93 E-value=0.015 Score=50.13 Aligned_cols=24 Identities=8% Similarity=-0.010 Sum_probs=21.5
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..++++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999987
No 191
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.90 E-value=0.015 Score=51.33 Aligned_cols=24 Identities=8% Similarity=0.318 Sum_probs=22.0
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999987
No 192
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.85 E-value=0.018 Score=49.56 Aligned_cols=23 Identities=17% Similarity=0.081 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+|+|.|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 193
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.82 E-value=0.016 Score=51.71 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999988
No 194
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.82 E-value=0.016 Score=50.40 Aligned_cols=21 Identities=10% Similarity=-0.013 Sum_probs=19.9
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 195
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.80 E-value=0.016 Score=50.81 Aligned_cols=23 Identities=9% Similarity=-0.000 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999998
No 196
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.80 E-value=0.04 Score=48.97 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=30.6
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCC---C-CcceeeeeecCCCCCCCH
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVK---H-YFDCHAWITEPYSNEYDA 152 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~---~-~F~~~~wv~~~vs~~~~~ 152 (418)
.-.+++|+|.+|+|||||++.+....... . .-...+|+. -...+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~--~~~~~~~ 73 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID--TENTFRP 73 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE--SSSCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEE--CCCCCCH
Confidence 35799999999999999999997621111 1 123467877 4443333
No 197
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.79 E-value=0.015 Score=53.28 Aligned_cols=23 Identities=9% Similarity=0.164 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999996
No 198
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.79 E-value=0.0073 Score=53.41 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=20.2
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
++|+|.|..|+||||+|+.+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3789999999999999999977
No 199
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.78 E-value=0.02 Score=51.47 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=23.1
Q ss_pred CCceEEEEECCCCCchHHHHHHHHh
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...++|.|.|++|+||||.|+.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999988
No 200
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.78 E-value=0.013 Score=52.49 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999987
No 201
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.77 E-value=0.081 Score=50.71 Aligned_cols=51 Identities=20% Similarity=0.103 Sum_probs=34.7
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHH
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKF 162 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~ 162 (418)
-.++.|.|.+|+||||||..+..+....+ ..++|++ . ..+..++...++..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g--~~Vl~fS--l--Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDD--RGVAVFS--L--EMSAEQLALRALSD 96 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT--CEEEEEE--S--SSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEe--C--CCCHHHHHHHHHHH
Confidence 45899999999999999999887422211 2355665 3 45566666666544
No 202
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.76 E-value=0.02 Score=50.83 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|.|.|+.|+||||+|+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999987
No 203
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.74 E-value=0.015 Score=52.20 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 204
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.73 E-value=0.02 Score=50.93 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 205
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.67 E-value=0.02 Score=48.64 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|..|+|||||++.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999987
No 206
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.66 E-value=0.037 Score=52.73 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=21.8
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+|+|+|.+|+||||++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999998876
No 207
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.59 E-value=0.019 Score=50.86 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=19.4
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999977
No 208
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.59 E-value=0.015 Score=51.87 Aligned_cols=23 Identities=13% Similarity=-0.104 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 209
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.56 E-value=0.037 Score=52.33 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=22.5
Q ss_pred CCceEEEEECCCCCchHHHHHHHHh
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
....+|+|+|..|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999987
No 210
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.54 E-value=0.019 Score=51.91 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.4
Q ss_pred ceEEEEECCCCCchHHHHHHHH
Q 041194 106 RSMVAILDSIGLDKTAFATEAY 127 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~ 127 (418)
-.+++|+|++|+|||||++.+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 4699999999999999999887
No 211
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.54 E-value=0.02 Score=54.15 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=21.8
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+++|+|.+|+|||||++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999999986
No 212
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.53 E-value=0.02 Score=53.42 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=21.8
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999984
No 213
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.49 E-value=0.021 Score=51.26 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=22.2
Q ss_pred CceEEEEECCCCCchHHHHHHHHhc
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.-.+++|+|+.|+|||||.+.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3569999999999999999999873
No 214
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.47 E-value=0.036 Score=49.32 Aligned_cols=22 Identities=27% Similarity=0.175 Sum_probs=20.2
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+++|+|..|+|||||++.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999875
No 215
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.45 E-value=0.022 Score=49.97 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=20.2
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999987
No 216
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.45 E-value=0.022 Score=50.57 Aligned_cols=21 Identities=10% Similarity=0.099 Sum_probs=19.4
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 217
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.40 E-value=0.014 Score=52.45 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=16.6
Q ss_pred ceEEEEECCCCCchHHHHHHHH-h
Q 041194 106 RSMVAILDSIGLDKTAFATEAY-N 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~-~ 128 (418)
-.+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 4689999999999999999998 6
No 218
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.35 E-value=0.062 Score=57.44 Aligned_cols=95 Identities=16% Similarity=0.193 Sum_probs=59.8
Q ss_pred CCCCCcccchhhHHHHHHHHhcC-----------CCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCC
Q 041194 80 SKSRDTVGLDDRMEKLLDLLIEG-----------PPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSN 148 (418)
Q Consensus 80 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~ 148 (418)
..-.++.|.++.+++|.+.+... -...+-+.++|++|.|||.||+.+.+ +.... ++. ++
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~--e~~~~-----f~~--v~- 543 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQAN-----FIS--IK- 543 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH--TTTCE-----EEE--CC-
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH--HhCCc-----eEE--ec-
Confidence 34456778998888888876431 12345578999999999999999999 54433 233 22
Q ss_pred CCCHHHHHHHHHHHhCCCCCccccccCCHHHHHHHHHHHhccCcEEEEEecc
Q 041194 149 EYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 149 ~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
..++ +... ...++..+...+...-+.....|++|++
T Consensus 544 ---~~~l----~s~~---------vGese~~vr~lF~~Ar~~~P~IifiDEi 579 (806)
T 3cf2_A 544 ---GPEL----LTMW---------FGESEANVREIFDKARQAAPCVLFFDEL 579 (806)
T ss_dssp ---HHHH----HTTT---------CSSCHHHHHHHHHHHHTTCSEEEECSCG
T ss_pred ---cchh----hccc---------cchHHHHHHHHHHHHHHcCCceeechhh
Confidence 1111 1111 1233444444455544567899999998
No 219
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.33 E-value=0.019 Score=52.76 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+|+|+|+.|+||||+++.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 220
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.32 E-value=0.02 Score=50.20 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=20.1
Q ss_pred EEEEECCCCCchHHHHHHHHhc
Q 041194 108 MVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d 129 (418)
+++|+|..|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999999873
No 221
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.29 E-value=0.036 Score=49.23 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 89 DDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 89 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.-+..+..++.. -+..+.+.|+|++|+||||+|..+.+
T Consensus 42 ~~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 42 ITFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 3345666666654 23345799999999999999999988
No 222
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.28 E-value=0.025 Score=51.53 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=26.0
Q ss_pred eEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 107 SMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
.+++|+|..|+|||||.+.+.. -. .-..+.+++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G--l~-~p~~G~i~~~ 58 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG--IV-KPDRGEVRLN 58 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT--SS-CCSEEEEEET
T ss_pred EEEEEECCCCCCHHHHHHHHhC--CC-CCCceEEEEC
Confidence 7999999999999999999987 22 2234555554
No 223
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.27 E-value=0.027 Score=53.16 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+++|+|..|+|||||++.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 224
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.23 E-value=0.062 Score=55.76 Aligned_cols=42 Identities=12% Similarity=0.198 Sum_probs=36.4
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 83 RDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..++|.+..++.+...+..+ ..+.|+|.+|+||||||+.+..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhc
Confidence 46789888888888877765 3789999999999999999998
No 225
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.21 E-value=0.07 Score=51.95 Aligned_cols=36 Identities=22% Similarity=0.169 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 92 MEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 92 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
--++++.|..-. .-.-++|+|.+|+|||+|++.+.+
T Consensus 162 GiraID~l~Pig-rGQR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 162 STRLIDLFAPIG-KGQRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp HHHHHHHHSCCB-TTCEEEEEECTTCCHHHHHHHHHH
T ss_pred cchhhhhccccc-CCceEEEecCCCCChhHHHHHHHH
Confidence 346777776532 134679999999999999999887
No 226
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.20 E-value=0.035 Score=59.25 Aligned_cols=46 Identities=15% Similarity=0.209 Sum_probs=37.6
Q ss_pred CCcccchhhHHHHHHHHhcCC-------CCceEEEEECCCCCchHHHHHHHHh
Q 041194 83 RDTVGLDDRMEKLLDLLIEGP-------PQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..++|.+..++.+.+.+.... .....+.++|++|+|||+||+.+.+
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999888886421 2234799999999999999999988
No 227
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.19 E-value=0.027 Score=54.05 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=20.9
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+|+|.|+.|+||||||..+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999988
No 228
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.17 E-value=0.014 Score=50.34 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=20.5
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
++++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999877
No 229
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.17 E-value=0.15 Score=51.61 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=20.5
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..++|+|+|.+|+||||++..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998885
No 230
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.16 E-value=0.028 Score=48.56 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.++++|+|..|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999999987
No 231
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.13 E-value=0.028 Score=53.77 Aligned_cols=23 Identities=9% Similarity=0.326 Sum_probs=21.6
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.++|.|+|+.|+||||||..+..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999998
No 232
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.12 E-value=0.026 Score=51.26 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=26.7
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
-.+++|+|+.|+|||||.+.+.. -. ....+.+++.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G--l~-~p~~G~I~~~ 65 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC--LD-KPTEGEVYID 65 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT--SS-CCSEEEEEET
T ss_pred CCEEEEECCCCCcHHHHHHHHhc--CC-CCCceEEEEC
Confidence 45899999999999999999987 22 2335566664
No 233
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.08 E-value=0.05 Score=53.05 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 93 EKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 93 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+.+-+.-+-+...+++|+|++|+|||||++.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 334444433334467999999999999999999997
No 234
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.07 E-value=0.033 Score=57.05 Aligned_cols=45 Identities=20% Similarity=0.356 Sum_probs=35.1
Q ss_pred CcccchhhHHHHHHHHhc----CCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 84 DTVGLDDRMEKLLDLLIE----GPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 84 ~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+++|.++.++.+.+.+.- .......+.++|++|+||||||+.+..
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 478888888777665432 122456899999999999999999998
No 235
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.03 E-value=0.26 Score=49.81 Aligned_cols=54 Identities=7% Similarity=0.019 Sum_probs=36.6
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFL 163 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l 163 (418)
.-.++.|.|.+|+||||||..+..+...... ..++|++ . ..+..++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g-~~vl~~s--~--E~s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMG-KKVGLAM--L--EESVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSC-CCEEEEE--S--SSCHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcC-CcEEEEe--c--cCCHHHHHHHHHHHH
Confidence 3568999999999999999998874222211 2456766 4 345667777766544
No 236
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.00 E-value=0.031 Score=52.33 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=20.7
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 237
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=93.99 E-value=0.083 Score=53.04 Aligned_cols=100 Identities=16% Similarity=0.169 Sum_probs=53.5
Q ss_pred HHHHHHhcCCCCceEEEEECCCCCchHHHH-HHHHhcCCCCCCcce-eeeeecCCCCCC-CHHHHHHHHHHHhCCCCCcc
Q 041194 94 KLLDLLIEGPPQRSMVAILDSIGLDKTAFA-TEAYNSSYVKHYFDC-HAWITEPYSNEY-DADQILDIVIKFLMPSSRLS 170 (418)
Q Consensus 94 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~d~~~~~~F~~-~~wv~~~vs~~~-~~~~ll~~il~~l~~~~~~~ 170 (418)
+.++.|..-. .-.-++|.|..|+|||+|| ..+.|. .. -+. .+++- +++.. .+.++.+++...=......-
T Consensus 151 raID~l~Pig-rGQR~~Ifg~~g~GKT~Lal~~I~~~--~~--~dv~~V~~~--iGeR~~Ev~~~~~~~~~~g~m~~tvv 223 (502)
T 2qe7_A 151 KAIDSMIPIG-RGQRELIIGDRQTGKTTIAIDTIINQ--KG--QDVICIYVA--IGQKQSTVAGVVETLRQHDALDYTIV 223 (502)
T ss_dssp HHHHHSSCCB-TTCBCEEEECSSSCHHHHHHHHHHGG--GS--CSEEEEEEE--ESCCHHHHHHHHHHHHHTTCSTTEEE
T ss_pred eecccccccc-cCCEEEEECCCCCCchHHHHHHHHHh--hc--CCcEEEEEE--CCCcchHHHHHHHHHhhCCCcceeEE
Confidence 4555555421 1235789999999999995 577773 22 343 34555 66554 45566666654211111000
Q ss_pred --ccccCC-HHH-----HHHHHHHHh--ccCcEEEEEecc
Q 041194 171 --EIMDKN-YEM-----KKIILHEYL--MTKRYLIVIDDF 200 (418)
Q Consensus 171 --~~~~~~-~~~-----l~~~l~~~L--~~kr~LlVLDDv 200 (418)
...... ... ..-.+.+++ ++|.+||++||+
T Consensus 224 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 224 VTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 001111 111 112233444 479999999999
No 238
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.99 E-value=0.03 Score=50.15 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=19.7
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 239
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.98 E-value=0.026 Score=50.33 Aligned_cols=22 Identities=9% Similarity=0.031 Sum_probs=20.4
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..|.|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 240
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.97 E-value=0.025 Score=50.98 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=26.6
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
-.+++|+|..|+|||||.+.+.. -. ....+.+++.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G--l~-~p~~G~i~~~ 64 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL--LD-APTEGKVFLE 64 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT--SS-CCSEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhc--CC-CCCceEEEEC
Confidence 35899999999999999999987 22 2334566654
No 241
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.97 E-value=0.033 Score=50.16 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...|.|.|+.|+||||+|+.+.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999988
No 242
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.91 E-value=0.059 Score=48.58 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=22.5
Q ss_pred CceEEEEECCCCCchHHHHHHHHhc
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
...+|+|.|+.|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999983
No 243
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.88 E-value=0.033 Score=50.56 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 244
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=93.87 E-value=0.056 Score=54.34 Aligned_cols=100 Identities=17% Similarity=0.156 Sum_probs=53.2
Q ss_pred HHHHHHhcCCCCceEEEEECCCCCchHHHH-HHHHhcCCCCCCcce-eeeeecCCCCCC-CHHHHHHHHHHHhCCCCCc-
Q 041194 94 KLLDLLIEGPPQRSMVAILDSIGLDKTAFA-TEAYNSSYVKHYFDC-HAWITEPYSNEY-DADQILDIVIKFLMPSSRL- 169 (418)
Q Consensus 94 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~d~~~~~~F~~-~~wv~~~vs~~~-~~~~ll~~il~~l~~~~~~- 169 (418)
+.++.|..-. .-.-++|.|..|+|||+|| ..+.|. .. -+. .+++- +++.. .+.++.+.+...=......
T Consensus 164 raID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~~--~~--~dv~~V~~~--IGeR~~Ev~e~~~~~~~~g~m~rtvv 236 (515)
T 2r9v_A 164 KAIDSMIPIG-RGQRELIIGDRQTGKTAIAIDTIINQ--KG--QGVYCIYVA--IGQKKSAIARIIDKLRQYGAMEYTTV 236 (515)
T ss_dssp HHHHHHSCEE-TTCBEEEEEETTSSHHHHHHHHHHTT--TT--TTEEEEEEE--ESCCHHHHHHHHHHHHHTTGGGGEEE
T ss_pred cccccccccc-cCCEEEEEcCCCCCccHHHHHHHHHh--hc--CCcEEEEEE--cCCCcHHHHHHHHHHHhCCCcceeEE
Confidence 4556555421 1235789999999999995 577773 32 343 34555 66554 4556666665421000000
Q ss_pred -cccccCC-HHH-----HHHHHHHHh--ccCcEEEEEecc
Q 041194 170 -SEIMDKN-YEM-----KKIILHEYL--MTKRYLIVIDDF 200 (418)
Q Consensus 170 -~~~~~~~-~~~-----l~~~l~~~L--~~kr~LlVLDDv 200 (418)
..+.... ... ..-.+.+++ ++|.+||++||+
T Consensus 237 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 237 VVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 0000111 111 112234444 479999999999
No 245
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.86 E-value=0.029 Score=50.96 Aligned_cols=23 Identities=17% Similarity=0.418 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|..|+|||||.+.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999987
No 246
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.86 E-value=0.021 Score=53.65 Aligned_cols=24 Identities=8% Similarity=0.198 Sum_probs=18.6
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+|+|.|..|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999877
No 247
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.86 E-value=0.03 Score=49.63 Aligned_cols=21 Identities=14% Similarity=0.004 Sum_probs=19.5
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 248
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.86 E-value=0.036 Score=50.53 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.6
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...++.+.|.||+|||||+..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 467889999999999999999985
No 249
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.85 E-value=0.034 Score=52.94 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.++|.|+|+.|+||||||+.+..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999988
No 250
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.81 E-value=0.03 Score=51.77 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=26.9
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
-.+++|+|..|+|||||.+.+.. -. ....+.+++.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G--l~-~p~~G~i~~~ 66 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF--LE-KPSEGAIIVN 66 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT--SS-CCSEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhc--CC-CCCCcEEEEC
Confidence 46899999999999999999987 22 2335566664
No 251
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.78 E-value=0.03 Score=52.14 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=26.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
-.+++|+|+.|+|||||.+.+.. -+ ....+.+++.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G--l~-~p~~G~I~~~ 68 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG--IL-KPSSGRILFD 68 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT--SS-CCSEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHHc--CC-CCCCeEEEEC
Confidence 45899999999999999999987 22 2345555554
No 252
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.78 E-value=0.038 Score=53.47 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+++|+|..|+|||||++.+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 457999999999999999999987
No 253
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.75 E-value=0.035 Score=50.88 Aligned_cols=37 Identities=8% Similarity=0.031 Sum_probs=26.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
-.+++|+|..|+|||||.+.+..-. ......+.+++.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl~-~~~p~~G~I~~~ 65 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGDP-EYTVERGEILLD 65 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTCT-TCEEEEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-CCCCCceEEEEC
Confidence 3589999999999999999999820 012234556554
No 254
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.72 E-value=0.032 Score=50.78 Aligned_cols=35 Identities=14% Similarity=0.137 Sum_probs=26.6
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
-.+++|+|..|+|||||.+.+.. -. ....+.+++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G--l~-~p~~G~i~~~ 66 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG--LV-RAQKGKIIFN 66 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT--SS-CCSEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhC--CC-CCCCceEEEC
Confidence 45899999999999999999987 22 2235566654
No 255
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.69 E-value=0.032 Score=51.31 Aligned_cols=35 Identities=9% Similarity=0.183 Sum_probs=26.7
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
-.+++|+|..|+|||||.+.+.. -. ....+.+++.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G--l~-~p~~G~i~~~ 67 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG--FL-KADEGRVYFE 67 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT--SS-CCSEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhC--CC-CCCCcEEEEC
Confidence 45899999999999999999987 22 2234566654
No 256
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.66 E-value=0.033 Score=51.62 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=26.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
-.+++|+|..|+|||||++.+.. -. ....+.+++.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G--l~-~p~~G~I~~~ 71 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG--YL-SPSHGECHLL 71 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS--SS-CCSSCEEEET
T ss_pred CCEEEEECCCCCcHHHHHHHHhc--CC-CCCCcEEEEC
Confidence 45899999999999999999987 22 2234556554
No 257
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.65 E-value=0.039 Score=52.24 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.++|.|+|+.|+||||||..+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999999988
No 258
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.64 E-value=0.036 Score=50.55 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|..|+|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999987
No 259
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.63 E-value=0.037 Score=51.27 Aligned_cols=36 Identities=11% Similarity=0.047 Sum_probs=26.7
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCC-CCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVK-HYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~-~~F~~~~wv~ 143 (418)
-.+++|+|..|+|||||.+.+.. -.. ....+.+++.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G--l~~~~p~~G~I~~~ 82 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG--REDYEVTGGTVEFK 82 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT--CTTCEEEEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhC--CCCCCCCCeEEEEC
Confidence 46899999999999999999998 221 1224556654
No 260
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.61 E-value=0.034 Score=50.26 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|..|+|||||.+.+..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999987
No 261
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.59 E-value=0.034 Score=51.40 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=27.3
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
.-.+++|+|..|+|||||.+.+.. -. ....+.+++.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G--l~-~p~~G~I~~~ 84 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL--LE-DFDEGEIIID 84 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT--SS-CCSEEEEEET
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc--CC-CCCCcEEEEC
Confidence 346899999999999999999987 32 2234566664
No 262
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.59 E-value=0.061 Score=45.26 Aligned_cols=23 Identities=9% Similarity=0.146 Sum_probs=20.7
Q ss_pred eEEEEECCCCCchHHHHHHHHhc
Q 041194 107 SMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 263
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.58 E-value=0.16 Score=59.20 Aligned_cols=97 Identities=18% Similarity=0.032 Sum_probs=58.8
Q ss_pred HHHHHh-cCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccc-c
Q 041194 95 LLDLLI-EGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSE-I 172 (418)
Q Consensus 95 l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~-~ 172 (418)
|-.+|. .+=+..+.+.|+|++|+|||+||.++..... ..=...+|++ ....++... ++.++.+-..-. .
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~--~e~~~~~l~-----a~~~G~dl~~l~v~ 1485 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFID--AEHALDPIY-----ARKLGVDIDNLLCS 1485 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEC--TTSCCCHHH-----HHHTTCCTTTCEEE
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEE--cccccCHHH-----HHHcCCCchhceee
Confidence 444443 2223567999999999999999999987422 2212356887 777766655 444543211000 1
Q ss_pred ccCCHHHHHHHHHHHhc-cCcEEEEEecc
Q 041194 173 MDKNYEMKKIILHEYLM-TKRYLIVIDDF 200 (418)
Q Consensus 173 ~~~~~~~l~~~l~~~L~-~kr~LlVLDDv 200 (418)
...+.++....++...+ .+--+||+|.+
T Consensus 1486 ~~~~~E~~l~~~~~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1486 QPDTGEQALEICDALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp CCSSHHHHHHHHHHHHHHTCCSEEEESCG
T ss_pred cCChHHHHHHHHHHHHhcCCCCEEEEcCh
Confidence 22344566666665543 46679999998
No 264
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.57 E-value=0.082 Score=56.34 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=37.7
Q ss_pred CCCcccchhhHHHHHHHHhcC-------CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIEG-------PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...++|.++.++.+...+... ......+.++|.+|+|||++|+.+.+
T Consensus 457 ~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 457 KMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 456889999998888877531 12344789999999999999999998
No 265
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.56 E-value=0.044 Score=49.47 Aligned_cols=25 Identities=16% Similarity=0.038 Sum_probs=22.5
Q ss_pred CCceEEEEECCCCCchHHHHHHHHh
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999987
No 266
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.55 E-value=0.035 Score=50.75 Aligned_cols=35 Identities=11% Similarity=0.150 Sum_probs=26.8
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
-.+++|+|..|+|||||.+.+.. -. ....+.+++.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G--l~-~p~~G~I~i~ 69 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR--FY-IPENGQVLID 69 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT--SS-CCSEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhc--CC-CCCCcEEEEC
Confidence 35899999999999999999987 22 2335666664
No 267
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.54 E-value=0.037 Score=54.67 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.6
Q ss_pred CCceEEEEECCCCCchHHHHHHHHh
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
....+|.|+|++|+||||+|+.+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999987
No 268
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.53 E-value=0.038 Score=47.96 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=21.6
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999999874
No 269
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.51 E-value=0.047 Score=54.23 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=21.4
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+|+|+|.+|+||||+|..+..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999998877
No 270
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.50 E-value=0.03 Score=50.06 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=20.9
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|..|+|||||.+.+..
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999987
No 271
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.49 E-value=0.045 Score=51.47 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=21.3
Q ss_pred CCceEEEEECCCCCchHHHHHHHHh
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...++|+|+|-||+||||+|..+..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHH
Confidence 4578999999999999999987765
No 272
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.47 E-value=0.035 Score=47.69 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=19.7
Q ss_pred EEEEECCCCCchHHHHHHHHhc
Q 041194 108 MVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998873
No 273
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.46 E-value=0.037 Score=50.93 Aligned_cols=35 Identities=9% Similarity=0.007 Sum_probs=26.7
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
-.+++|+|..|+|||||.+.+.. -. ....+.+++.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G--l~-~p~~G~I~~~ 75 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST--LI-KPSSGIVTVF 75 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT--SS-CCSEEEEEET
T ss_pred CcEEEEECCCCCCHHHHHHHHhc--CC-CCCceEEEEC
Confidence 45899999999999999999987 22 2234566654
No 274
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.45 E-value=0.044 Score=48.67 Aligned_cols=81 Identities=14% Similarity=0.131 Sum_probs=44.6
Q ss_pred EEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCC-----CCccccccCCHHHHHH
Q 041194 108 MVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPS-----SRLSEIMDKNYEMKKI 182 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~-----~~~~~~~~~~~~~l~~ 182 (418)
+|.|.|++|+||||.|+.+... |. ...++ ..+++++-+..-..- .......-.+.+-...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~------~g-~~~is--------tGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~ 66 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE------KG-FVHIS--------TGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIA 66 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH------HC-CEEEE--------HHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH------HC-CeEEc--------HHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHH
Confidence 6889999999999999999882 21 12233 233333322211000 0000001123345566
Q ss_pred HHHHHhccCcEEEEEeccCCCc
Q 041194 183 ILHEYLMTKRYLIVIDDFEDGE 204 (418)
Q Consensus 183 ~l~~~L~~kr~LlVLDDvp~~~ 204 (418)
.+.+.+..... +|||+.|.+.
T Consensus 67 lv~~~l~~~~~-~ilDGfPRt~ 87 (206)
T 3sr0_A 67 LIEEVFPKHGN-VIFDGFPRTV 87 (206)
T ss_dssp HHHHHCCSSSC-EEEESCCCSH
T ss_pred HHHHhhccCCc-eEecCCchhH
Confidence 77777765544 6789988765
No 275
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.43 E-value=0.082 Score=48.83 Aligned_cols=36 Identities=14% Similarity=0.112 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 93 EKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 93 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-+..||....+....+.++|++|+|||.+|..+.+
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 345556655434456799999999999999999998
No 276
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.42 E-value=0.036 Score=49.90 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=22.4
Q ss_pred CCceEEEEECCCCCchHHHHHHHHh
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..-.+|+|.|..|+|||||++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3467999999999999999999887
No 277
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.41 E-value=0.039 Score=50.92 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=27.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
-.+++|+|..|+|||||.+.+.. -.. . .+.+++.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G--l~~-~-~G~I~i~ 79 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR--FYD-A-EGDIKIG 79 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT--SSC-C-EEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhc--cCC-C-CeEEEEC
Confidence 45899999999999999999988 333 2 5666664
No 278
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.40 E-value=0.038 Score=51.27 Aligned_cols=36 Identities=14% Similarity=0.113 Sum_probs=27.2
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
.-.+++|+|..|+|||||.+.+.. -. .-..+.+++.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~G--l~-~p~~G~I~~~ 79 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN--LY-QPTGGKVLLD 79 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT--SS-CCSEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc--CC-CCCCCEEEEC
Confidence 346899999999999999999987 22 2234566654
No 279
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.39 E-value=0.042 Score=47.84 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999874
No 280
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.38 E-value=0.09 Score=52.85 Aligned_cols=86 Identities=13% Similarity=0.069 Sum_probs=47.7
Q ss_pred eEEEEECCCCCchHHHH-HHHHhcCCCCCCcce-eeeeecCCCCCC-CHHHHHHHHHHHhC--C------C-CCccc---
Q 041194 107 SMVAILDSIGLDKTAFA-TEAYNSSYVKHYFDC-HAWITEPYSNEY-DADQILDIVIKFLM--P------S-SRLSE--- 171 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA-~~v~~d~~~~~~F~~-~~wv~~~vs~~~-~~~~ll~~il~~l~--~------~-~~~~~--- 171 (418)
.-++|.|..|+|||+|| ..+.|. .. -+. .+++- +++.. .+.++.+++...=. . . +..+.
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~--~~--~dv~~V~~~--iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQ--QG--QNVICVYVA--IGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTC--CT--TTCEEEEEE--ESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred CEEEEecCCCCCccHHHHHHHHHh--hc--CCcEEEEEE--cCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 35689999999999995 577773 32 342 34555 66554 44455555543200 0 0 00000
Q ss_pred cccCCHHHHHHHHHHHhccCcEEEEEecc
Q 041194 172 IMDKNYEMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 172 ~~~~~~~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
......-...++++. ++|.+||++||+
T Consensus 238 ~a~~~a~tiAEyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 238 LAPYTGAALAEYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHHH--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 000111223445555 489999999998
No 281
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.37 E-value=0.21 Score=49.78 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=33.4
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHH
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVI 160 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il 160 (418)
.-.++.|.|.+|+||||||..+..+...... ..++|++ . ..+..++...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g-~~Vl~~s--~--E~s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTN-ENVAIFS--L--EMSAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSS-CCEEEEE--S--SSCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEEE--C--CCCHHHHHHHHH
Confidence 3469999999999999999998874221111 1456666 3 334556666554
No 282
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.36 E-value=0.11 Score=45.87 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=24.3
Q ss_pred eEEEEECCCCCchHHHHHHHHhcCCCCCCcce
Q 041194 107 SMVAILDSIGLDKTAFATEAYNSSYVKHYFDC 138 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~ 138 (418)
+.|+|=|..|+||||+++.+.+ .+...++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~--~L~~~~~v 32 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYH--RLVKDYDV 32 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH--HHTTTSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHH--HHHCCCCE
Confidence 5789999999999999999998 45444443
No 283
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.35 E-value=0.053 Score=51.27 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=22.0
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..++|.|+|+.|+||||||..+..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 357899999999999999999988
No 284
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.32 E-value=0.055 Score=49.88 Aligned_cols=23 Identities=9% Similarity=0.199 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|+.|+|||||.+.+..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 46999999999999999999876
No 285
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.32 E-value=0.04 Score=50.95 Aligned_cols=35 Identities=6% Similarity=0.034 Sum_probs=26.6
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
-.+++|+|..|+|||||.+.+.. -. ....+.+++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G--l~-~p~~G~I~~~ 67 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG--LI-EPTSGDVLYD 67 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT--SS-CCSEEEEEET
T ss_pred CCEEEEECCCCCcHHHHHHHHhC--CC-CCCCcEEEEC
Confidence 45899999999999999999987 22 2234556654
No 286
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.32 E-value=0.041 Score=50.45 Aligned_cols=34 Identities=6% Similarity=0.075 Sum_probs=26.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
-.+++|+|..|+|||||.+.+.. -.... +.+++.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G--l~~p~--G~i~~~ 59 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG--MTSGK--GSIQFA 59 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT--SSCCE--EEEEET
T ss_pred CCEEEEECCCCCcHHHHHHHHhC--CCCCC--eEEEEC
Confidence 35899999999999999999988 44332 556554
No 287
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.31 E-value=0.055 Score=44.81 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=20.6
Q ss_pred eEEEEECCCCCchHHHHHHHHhc
Q 041194 107 SMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.-|+|+|.+|+|||||...+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 288
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.31 E-value=0.086 Score=46.34 Aligned_cols=34 Identities=9% Similarity=-0.043 Sum_probs=24.4
Q ss_pred EEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 108 MVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
.|+|=|.-|+||||.++.+.+ .+...-...++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEE
Confidence 478889999999999999988 4433322334444
No 289
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.28 E-value=0.048 Score=54.39 Aligned_cols=104 Identities=13% Similarity=0.085 Sum_probs=55.8
Q ss_pred HHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCc--ceeeeeecCCCCCC-CHHHHHHHHHHHhCCCCCc-
Q 041194 94 KLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYF--DCHAWITEPYSNEY-DADQILDIVIKFLMPSSRL- 169 (418)
Q Consensus 94 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F--~~~~wv~~~vs~~~-~~~~ll~~il~~l~~~~~~- 169 (418)
+.++.|..-. .-.-++|.|.+|+|||+|+..+.++....+.= +..+++- +++.. .+.++.+++...=......
T Consensus 141 r~ID~l~pig-rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~--iGER~~Ev~e~~~~~~~~g~m~rtvv 217 (469)
T 2c61_A 141 STIDGTNTLV-RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAA--MGITNEEAQYFMSDFEKTGALERAVV 217 (469)
T ss_dssp HHHHTTSCCB-TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEE--EEECHHHHHHHHHHHHHHSGGGGEEE
T ss_pred Eeeeeeeccc-cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEE--ccCCcHHHHHHHHHHHhccCccceEE
Confidence 3455554421 12346788999999999999999864432210 2345555 55443 4556777666431100000
Q ss_pred -cccccCCH------HHHHHHHHHHhc---cCcEEEEEecc
Q 041194 170 -SEIMDKNY------EMKKIILHEYLM---TKRYLIVIDDF 200 (418)
Q Consensus 170 -~~~~~~~~------~~l~~~l~~~L~---~kr~LlVLDDv 200 (418)
..+..... ....-.+.++++ ++.+||++||+
T Consensus 218 V~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 218 FLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 00011111 111223455554 69999999998
No 290
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.24 E-value=0.042 Score=51.27 Aligned_cols=35 Identities=11% Similarity=-0.032 Sum_probs=26.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
-.+++|+|..|+|||||.+.+.. -.. ...+.+++.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G--l~~-p~~G~I~~~ 81 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA--YEP-ATSGTVNLF 81 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT--SSC-CSEEEEEET
T ss_pred CCEEEEECCCCCcHHHHHHHHhC--CCC-CCCeEEEEC
Confidence 45899999999999999999987 222 234556554
No 291
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.18 E-value=0.043 Score=50.40 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|..|+|||||.+.+..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999987
No 292
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.17 E-value=0.062 Score=46.21 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=22.4
Q ss_pred CCceEEEEECCCCCchHHHHHHHHhc
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.....|+|+|.+|+|||||...+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999999874
No 293
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.15 E-value=0.043 Score=50.90 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.8
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.++.|+|.+|+|||||+..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46999999999999999998875
No 294
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.13 E-value=0.042 Score=54.60 Aligned_cols=91 Identities=15% Similarity=0.191 Sum_probs=49.7
Q ss_pred EEEEECCCCCchHHHHHHHHhcCCCC--------CCcc-eeeeeecCCCCC-CCHHHHHHHHHHH--hCCCCCccc-ccc
Q 041194 108 MVAILDSIGLDKTAFATEAYNSSYVK--------HYFD-CHAWITEPYSNE-YDADQILDIVIKF--LMPSSRLSE-IMD 174 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d~~~~--------~~F~-~~~wv~~~vs~~-~~~~~ll~~il~~--l~~~~~~~~-~~~ 174 (418)
-++|.|..|+|||+|+.++.+..... ++=+ ..+++- +++. -.+.++.+++... +....-... .+.
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~--iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAA--MGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEE--EEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred EEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEE--ecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 45788999999999999999854431 1111 344555 5544 3455666665442 100000000 011
Q ss_pred CCHHH-----HHHHHHHHhc---cCcEEEEEecc
Q 041194 175 KNYEM-----KKIILHEYLM---TKRYLIVIDDF 200 (418)
Q Consensus 175 ~~~~~-----l~~~l~~~L~---~kr~LlVLDDv 200 (418)
..... ..-.+.++++ ++.+||++||+
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 11222 1233556654 68999999999
No 295
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.10 E-value=0.064 Score=44.34 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=19.9
Q ss_pred EEEEECCCCCchHHHHHHHHhc
Q 041194 108 MVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
No 296
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.09 E-value=0.053 Score=49.02 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...|+|.|..|+||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999998
No 297
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.09 E-value=0.065 Score=53.24 Aligned_cols=103 Identities=15% Similarity=0.183 Sum_probs=55.0
Q ss_pred HHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCC---CCcceeeeeecCCCCC-CCHHHHHHHHHHH--hCCCC
Q 041194 94 KLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVK---HYFDCHAWITEPYSNE-YDADQILDIVIKF--LMPSS 167 (418)
Q Consensus 94 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~---~~F~~~~wv~~~vs~~-~~~~~ll~~il~~--l~~~~ 167 (418)
+.++.|..-... .-++|.|..|+|||+|+.++.+..... ..| ..+++- +++. -.+.++.+++... +....
T Consensus 140 raID~l~pigrG-Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~-~~V~~~--iGeR~~Ev~e~~~~~~~~g~~~rtv 215 (465)
T 3vr4_D 140 SAIDHLNTLVRG-QKLPVFSGSGLPHKELAAQIARQATVLDSSDDF-AVVFAA--IGITFEEAEFFMEDFRQTGAIDRSV 215 (465)
T ss_dssp HHHHTTSCCBTT-CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCE-EEEEEE--EEECHHHHHHHHHHHHHHTGGGGEE
T ss_pred eEEecccccccC-CEEEEeCCCCcChHHHHHHHHHHHHhccCCCce-EEEEEE--ecCCcHHHHHHHHHHhhcCCccceE
Confidence 345555442211 236889999999999999999854331 111 344555 5544 3455666665443 11000
Q ss_pred CccccccCCH-HH-----HHHHHHHHhc---cCcEEEEEecc
Q 041194 168 RLSEIMDKNY-EM-----KKIILHEYLM---TKRYLIVIDDF 200 (418)
Q Consensus 168 ~~~~~~~~~~-~~-----l~~~l~~~L~---~kr~LlVLDDv 200 (418)
-......... .. ..-.+.++++ ++.+||++||+
T Consensus 216 vV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 216 MFMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 0000011111 11 1223555654 68999999999
No 298
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.06 E-value=0.053 Score=45.20 Aligned_cols=24 Identities=4% Similarity=0.102 Sum_probs=20.9
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999999874
No 299
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.05 E-value=0.053 Score=51.21 Aligned_cols=24 Identities=8% Similarity=0.221 Sum_probs=21.8
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|+|..|+|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 356899999999999999999987
No 300
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.03 E-value=0.047 Score=51.01 Aligned_cols=53 Identities=8% Similarity=0.078 Sum_probs=34.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcc-eeeeeecCCCCCCCHHHHHHHHHHHhC
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFD-CHAWITEPYSNEYDADQILDIVIKFLM 164 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~-~~~wv~~~vs~~~~~~~ll~~il~~l~ 164 (418)
-.+++|+|.+|+|||||++.+....... -. .++|++ .. .+..++...++....
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~--~e--~~~~~~~~r~~~~~~ 88 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAM--LE--ESVEETAEDLIGLHN 88 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEE--SS--SCHHHHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEe--Cc--CCHHHHHHHHHHHHc
Confidence 4599999999999999999988732211 11 345655 33 345566666655543
No 301
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.00 E-value=0.065 Score=45.83 Aligned_cols=24 Identities=8% Similarity=0.137 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
...|+++|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999873
No 302
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.97 E-value=0.061 Score=50.55 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=21.7
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+++|+|.+|+||||++..++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999887
No 303
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.97 E-value=0.061 Score=46.04 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=22.4
Q ss_pred CCceEEEEECCCCCchHHHHHHHHhc
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
....-|+|+|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999998874
No 304
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.94 E-value=0.053 Score=49.70 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.6
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
++|+|.|-||+||||+|..+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHH
Confidence 6788899999999999988876
No 305
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=92.93 E-value=0.14 Score=51.40 Aligned_cols=99 Identities=13% Similarity=0.090 Sum_probs=53.8
Q ss_pred HHHHHHhcCCCCceEEEEECCCCCchHHHH-HHHHhcCCCCCCcceeeeeecCCCCCC-CHHHHHHHHHHHhCCCCCcc-
Q 041194 94 KLLDLLIEGPPQRSMVAILDSIGLDKTAFA-TEAYNSSYVKHYFDCHAWITEPYSNEY-DADQILDIVIKFLMPSSRLS- 170 (418)
Q Consensus 94 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~d~~~~~~F~~~~wv~~~vs~~~-~~~~ll~~il~~l~~~~~~~- 170 (418)
+.++.|..-. .-.-++|.|..|+|||+|| ..+.| .....+ ..+++- +++.. .+.++.+++...=......-
T Consensus 151 kaID~l~Pig-rGQR~~Ifg~~g~GKT~l~l~~I~n--~~~~dv-~~V~~~--IGeR~~ev~e~~~~l~~~g~m~~tvvV 224 (513)
T 3oaa_A 151 KAVDSMIPIG-RGQRELIIGDRQTGKTALAIDAIIN--QRDSGI-KCIYVA--IGQKASTISNVVRKLEEHGALANTIVV 224 (513)
T ss_dssp HHHHHHSCCB-TTCBCEEEESSSSSHHHHHHHHHHT--TSSSSC-EEEEEE--ESCCHHHHHHHHHHHHHHSCSTTEEEE
T ss_pred eeeccccccc-cCCEEEeecCCCCCcchHHHHHHHh--hccCCc-eEEEEE--ecCChHHHHHHHHHHhhcCcccceEEE
Confidence 3555555421 1235689999999999996 56777 222222 235666 77654 45567676544311111000
Q ss_pred -ccccCC----------HHHHHHHHHHHhccCcEEEEEecc
Q 041194 171 -EIMDKN----------YEMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 171 -~~~~~~----------~~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
...... .-...+++++ +++.+||++||+
T Consensus 225 ~atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsl 263 (513)
T 3oaa_A 225 VATASESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDL 263 (513)
T ss_dssp EECTTSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETH
T ss_pred EECCCCChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecCh
Confidence 000111 1122344443 579999999999
No 306
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.91 E-value=0.095 Score=44.17 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=22.0
Q ss_pred CceEEEEECCCCCchHHHHHHHHhc
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
....|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999874
No 307
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.90 E-value=0.051 Score=53.61 Aligned_cols=24 Identities=21% Similarity=0.219 Sum_probs=22.0
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999987
No 308
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.85 E-value=0.22 Score=49.52 Aligned_cols=52 Identities=21% Similarity=0.206 Sum_probs=33.6
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHH
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKF 162 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~ 162 (418)
.-.++.|.|.+|+||||||..+..+...++ ..++|++ . ..+..++...++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fS--l--Ems~~ql~~R~~~~ 247 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHS--L--EMGKKENIKRLIVT 247 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEEC--S--SSCTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEE--C--CCCHHHHHHHHHHH
Confidence 356899999999999999999887432221 2455665 3 33444555555443
No 309
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.85 E-value=0.057 Score=46.32 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=20.6
Q ss_pred eEEEEECCCCCchHHHHHHHHhc
Q 041194 107 SMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
--|+++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999999875
No 310
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.85 E-value=0.08 Score=43.89 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.5
Q ss_pred eEEEEECCCCCchHHHHHHHHhc
Q 041194 107 SMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.-|+|+|.+|+|||||...+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999999875
No 311
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.84 E-value=0.056 Score=45.42 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=20.9
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|.+|+|||||...+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346899999999999999999864
No 312
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.82 E-value=0.053 Score=51.47 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=22.6
Q ss_pred CceEEEEECCCCCchHHHHHHHHhc
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
...+++|+|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4689999999999999999999963
No 313
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.78 E-value=0.1 Score=49.90 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=26.2
Q ss_pred HHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 94 KLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 94 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+++-+.-.-....+++|+|.+|+|||||.+.+..
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444433333467999999999999999999974
No 314
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.72 E-value=0.13 Score=45.87 Aligned_cols=23 Identities=13% Similarity=0.034 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-..|.|-|..|+||||+++.+.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 315
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.71 E-value=0.056 Score=49.94 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=25.9
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
-.+++|+|..|+|||||.+.+.. .. ...+.+++.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G--l~--p~~G~I~~~ 63 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG--LL--PYSGNIFIN 63 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT--SS--CCEEEEEET
T ss_pred CEEEEEECCCCCCHHHHHHHHhC--CC--CCCcEEEEC
Confidence 34899999999999999999987 33 334555554
No 316
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.69 E-value=0.087 Score=43.98 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|.+|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999999875
No 317
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.69 E-value=0.057 Score=50.08 Aligned_cols=21 Identities=14% Similarity=0.427 Sum_probs=19.6
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999987
No 318
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.69 E-value=0.11 Score=49.78 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=26.0
Q ss_pred HHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 94 KLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 94 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+.+-+........+|+|+|.+|+|||||+..+..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34444333334578999999999999999999864
No 319
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.65 E-value=0.065 Score=44.77 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.3
Q ss_pred eEEEEECCCCCchHHHHHHHHhc
Q 041194 107 SMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
--|+|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999874
No 320
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.62 E-value=0.066 Score=44.53 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.9
Q ss_pred EEEEECCCCCchHHHHHHHHhc
Q 041194 108 MVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 321
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.58 E-value=0.073 Score=44.34 Aligned_cols=22 Identities=9% Similarity=0.208 Sum_probs=19.8
Q ss_pred EEEEECCCCCchHHHHHHHHhc
Q 041194 108 MVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 322
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.57 E-value=0.26 Score=57.54 Aligned_cols=100 Identities=17% Similarity=0.016 Sum_probs=61.8
Q ss_pred HHHHHHHHh-cCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCcc
Q 041194 92 MEKLLDLLI-EGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLS 170 (418)
Q Consensus 92 ~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~ 170 (418)
...|-.+|. .+=+.-+++.|+|.+|+||||||.++..... ..=...+|++ ....++... ++.++.+....
T Consensus 368 ~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis--~E~s~~~~~-----a~~lGvd~~~L 438 (2050)
T 3cmu_A 368 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFID--AEHALDPIY-----ARKLGVDIDNL 438 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEC--TTSCCCHHH-----HHHTTCCTTTC
T ss_pred CHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEE--cCCCHHHHH-----HHHcCCCHHHe
Confidence 344444453 2213457999999999999999999987432 2213567888 666666532 45555432110
Q ss_pred -ccccCCHHHHHHHHHHHhc-cCcEEEEEecc
Q 041194 171 -EIMDKNYEMKKIILHEYLM-TKRYLIVIDDF 200 (418)
Q Consensus 171 -~~~~~~~~~l~~~l~~~L~-~kr~LlVLDDv 200 (418)
-....+.+++.+.++...+ .+--+||+|-+
T Consensus 439 ~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL 470 (2050)
T 3cmu_A 439 LCSQPDTGEQALEICDALARSGAVDVIVVDSV 470 (2050)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTCCSEEEESCG
T ss_pred EEeCCCCHHHHHHHHHHHHHhcCCcEEEECCH
Confidence 0123466777777765543 45569999987
No 323
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.56 E-value=0.075 Score=46.88 Aligned_cols=23 Identities=26% Similarity=0.164 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-+.|.|.|..|+||||||..+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999988
No 324
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.55 E-value=0.066 Score=44.75 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.4
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
--|+|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999864
No 325
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.51 E-value=0.069 Score=44.26 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.8
Q ss_pred EEEEECCCCCchHHHHHHHHhc
Q 041194 108 MVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999998864
No 326
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.51 E-value=0.074 Score=44.34 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.5
Q ss_pred eEEEEECCCCCchHHHHHHHHhc
Q 041194 107 SMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
--|+|+|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999999875
No 327
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.49 E-value=0.066 Score=49.81 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=20.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.++|+|.|.||+||||+|..+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 46888999999999999988876
No 328
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.48 E-value=0.093 Score=53.17 Aligned_cols=46 Identities=9% Similarity=0.103 Sum_probs=32.2
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 83 RDTVGLDDRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 83 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+....+.+-.+.+.+.......+..+|.+.|+.|+||||+|+.+..
T Consensus 372 P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~ 417 (511)
T 1g8f_A 372 PEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLS 417 (511)
T ss_dssp CTTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred CccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHH
Confidence 3445555555555554422223457899999999999999999998
No 329
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.47 E-value=0.063 Score=48.22 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=25.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
-.++.|.|.+|+||||||..+... ....=...+|++
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE
Confidence 468999999999999998877652 111112456766
No 330
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.43 E-value=0.047 Score=50.11 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=21.8
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
....|+|.|..|+||||+|+.+.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998887
No 331
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.42 E-value=0.047 Score=51.62 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=21.6
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|+|..|+|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 356899999999999999999977
No 332
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.40 E-value=0.077 Score=44.79 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=21.6
Q ss_pred CceEEEEECCCCCchHHHHHHHHhc
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
...-|+|+|.+|+|||||...+.++
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3556899999999999999998874
No 333
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.40 E-value=0.11 Score=56.13 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=36.3
Q ss_pred CcccchhhHHHHHHHHhcC-------CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 84 DTVGLDDRMEKLLDLLIEG-------PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 84 ~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.++|.+..++.+...+... +.....+.|+|.+|+|||++|+.+.+
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4689999888888887542 12235789999999999999999988
No 334
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=92.38 E-value=0.09 Score=52.89 Aligned_cols=104 Identities=16% Similarity=0.132 Sum_probs=54.0
Q ss_pred HHHHHHhcCCCCceEEEEECCCCCchHHHH-HHHHhcCCC----CCCcce-eeeeecCCCCCC-CHHHHHHHHHHHhCCC
Q 041194 94 KLLDLLIEGPPQRSMVAILDSIGLDKTAFA-TEAYNSSYV----KHYFDC-HAWITEPYSNEY-DADQILDIVIKFLMPS 166 (418)
Q Consensus 94 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~d~~~----~~~F~~-~~wv~~~vs~~~-~~~~ll~~il~~l~~~ 166 (418)
+.++.|..-. .-.-++|.|..|+|||+|| ..+.|.... .++-+. .+++- +++.. .+.++.+.+...=...
T Consensus 151 raID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~--IGeR~~Ev~~~~~~~~~~g~m~ 227 (510)
T 2ck3_A 151 KAVDSLVPIG-RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVA--IGQKRSTVAQLVKRLTDADAMK 227 (510)
T ss_dssp HHHHHHSCCB-TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEE--ESCCHHHHHHHHHHHHHTTCGG
T ss_pred eeeccccccc-cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEE--CCCCcHHHHHHHHHHHhcCCcc
Confidence 4566665421 1235689999999999995 566663211 122343 45665 66554 4556666665421100
Q ss_pred CCc--cccccCC-HHH-----HHHHHHHHh--ccCcEEEEEecc
Q 041194 167 SRL--SEIMDKN-YEM-----KKIILHEYL--MTKRYLIVIDDF 200 (418)
Q Consensus 167 ~~~--~~~~~~~-~~~-----l~~~l~~~L--~~kr~LlVLDDv 200 (418)
... ....... ... ..-.+.+++ ++|.+||++||+
T Consensus 228 ~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 228 YTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp GEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred cceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 000 0000111 111 112233444 479999999999
No 335
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.35 E-value=0.071 Score=45.69 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=20.1
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+.+|+|..|+|||||+..++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3889999999999999999875
No 336
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.34 E-value=0.068 Score=45.45 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=20.6
Q ss_pred eEEEEECCCCCchHHHHHHHHhc
Q 041194 107 SMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999874
No 337
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.29 E-value=0.1 Score=44.42 Aligned_cols=24 Identities=13% Similarity=0.275 Sum_probs=20.9
Q ss_pred eEEEEECCCCCchHHHHHHHHhcC
Q 041194 107 SMVAILDSIGLDKTAFATEAYNSS 130 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d~ 130 (418)
--|+|+|.+|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 357899999999999999998753
No 338
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.28 E-value=0.078 Score=44.07 Aligned_cols=21 Identities=10% Similarity=-0.008 Sum_probs=19.1
Q ss_pred EEEECCCCCchHHHHHHHHhc
Q 041194 109 VAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~d 129 (418)
|+|+|.+|+|||||...+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999764
No 339
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.26 E-value=0.076 Score=45.55 Aligned_cols=23 Identities=13% Similarity=-0.085 Sum_probs=19.7
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.--|+|+|.+|+|||||.+.+.+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 44688999999999999987766
No 340
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.25 E-value=0.1 Score=44.26 Aligned_cols=25 Identities=12% Similarity=0.296 Sum_probs=21.6
Q ss_pred CceEEEEECCCCCchHHHHHHHHhc
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..--|+|+|.+|+|||||...+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999999875
No 341
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.21 E-value=0.073 Score=52.18 Aligned_cols=23 Identities=13% Similarity=0.377 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.++|+|.|+.|+||||||..+..
T Consensus 2 ~~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHH
Confidence 36899999999999999999987
No 342
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.21 E-value=0.15 Score=46.70 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 93 EKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 93 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.++.+.+.........|+|+|.+|+|||||...+...
T Consensus 23 ~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 23 IEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp HHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred HHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3444444444444667899999999999999999875
No 343
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.16 E-value=0.068 Score=44.51 Aligned_cols=21 Identities=29% Similarity=0.278 Sum_probs=18.9
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-|+|+|.+|+|||||.+.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998865
No 344
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.16 E-value=0.15 Score=46.83 Aligned_cols=35 Identities=14% Similarity=0.180 Sum_probs=26.3
Q ss_pred HHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 95 LLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 95 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
+.+.+...+.....|+++|.+|+|||||...+...
T Consensus 28 ~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 28 LLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp HHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred HHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 33334444444567899999999999999999874
No 345
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.15 E-value=0.079 Score=45.56 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=20.6
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 446889999999999999888774
No 346
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.14 E-value=0.066 Score=50.23 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.7
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|+|..|+|||||.+.+..
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 346899999999999999999987
No 347
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.12 E-value=0.083 Score=43.98 Aligned_cols=23 Identities=9% Similarity=0.150 Sum_probs=20.3
Q ss_pred eEEEEECCCCCchHHHHHHHHhc
Q 041194 107 SMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
--|+|+|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999874
No 348
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.12 E-value=0.073 Score=45.53 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 446789999999999999999875
No 349
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.11 E-value=0.072 Score=51.47 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|+.|+|||||.+.+..
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 45899999999999999999976
No 350
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.11 E-value=0.082 Score=44.55 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999999874
No 351
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.07 E-value=0.08 Score=51.26 Aligned_cols=23 Identities=9% Similarity=0.160 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|+.|+|||||.+.+..
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHhc
Confidence 46899999999999999999976
No 352
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.07 E-value=0.071 Score=47.20 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=20.4
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 353
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.06 E-value=0.092 Score=43.86 Aligned_cols=24 Identities=21% Similarity=0.097 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..-|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999774
No 354
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.04 E-value=0.1 Score=44.17 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..-|+|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999999864
No 355
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.03 E-value=0.097 Score=46.04 Aligned_cols=25 Identities=16% Similarity=0.084 Sum_probs=22.1
Q ss_pred CceEEEEECCCCCchHHHHHHHHhc
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
....|.|+|.+|+|||||...+.+.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999884
No 356
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.02 E-value=0.091 Score=45.20 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=20.9
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 446889999999999999998875
No 357
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.02 E-value=0.08 Score=51.20 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...++|+|..|+|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 358
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.01 E-value=0.088 Score=44.39 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=20.7
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 345889999999999999998864
No 359
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.01 E-value=0.24 Score=56.93 Aligned_cols=87 Identities=16% Similarity=0.047 Sum_probs=56.4
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCC-ccccccCCHHHHHHH
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSR-LSEIMDKNYEMKKII 183 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~-~~~~~~~~~~~l~~~ 183 (418)
.-+++.|+|.+|+||||||.++....... =...+|++ ....++.. .++.++.+.. ..-....+.+++...
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~--G~~vlyis--~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~ 452 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFID--AEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEI 452 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEC--TTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEE--ccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHH
Confidence 45799999999999999999987742221 13578888 77666653 2455554321 000223456677666
Q ss_pred HHHHhc-cCcEEEEEecc
Q 041194 184 LHEYLM-TKRYLIVIDDF 200 (418)
Q Consensus 184 l~~~L~-~kr~LlVLDDv 200 (418)
++...+ .+--+||+|-+
T Consensus 453 l~~lv~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 453 CDALARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHHHHHTCCSEEEESCS
T ss_pred HHHHHHhcCCCEEEECCH
Confidence 665553 35569999988
No 360
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.01 E-value=0.085 Score=43.99 Aligned_cols=23 Identities=9% Similarity=0.239 Sum_probs=20.4
Q ss_pred eEEEEECCCCCchHHHHHHHHhc
Q 041194 107 SMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
--|+|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45889999999999999999874
No 361
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.00 E-value=0.077 Score=44.76 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=22.0
Q ss_pred CceEEEEECCCCCchHHHHHHHHhc
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
...-|+|+|.+|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999999875
No 362
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.99 E-value=0.087 Score=44.35 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=21.8
Q ss_pred CceEEEEECCCCCchHHHHHHHHhc
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
...-|.|+|.+|+|||||...+.+.
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3567899999999999999999875
No 363
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.99 E-value=0.075 Score=44.84 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=21.6
Q ss_pred CceEEEEECCCCCchHHHHHHHHhc
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..--|+|+|.+|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4556899999999999999999764
No 364
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.97 E-value=0.084 Score=50.95 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|+.|+|||||.+.+..
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999976
No 365
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.85 E-value=0.093 Score=45.11 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=22.0
Q ss_pred CceEEEEECCCCCchHHHHHHHHhc
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
....|+|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999874
No 366
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.84 E-value=0.26 Score=50.01 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=39.3
Q ss_pred HHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCC-HHHHHHHH
Q 041194 94 KLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYD-ADQILDIV 159 (418)
Q Consensus 94 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~-~~~ll~~i 159 (418)
+.++.|..-. .-.-++|.|..|+|||+|++.+.+.. +-+..+++- +++..+ +.++++++
T Consensus 216 rvID~l~Pig-kGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~--iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-KGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIG--CGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-TTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEE--CCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-cCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEE--ecccHHHHHHHHHHH
Confidence 4555554321 23467999999999999999998742 224567777 776654 44555554
No 367
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.83 E-value=0.12 Score=43.76 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..-|+|+|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456889999999999999999875
No 368
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.81 E-value=0.1 Score=53.16 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|.++|++|.||||+|+.+..
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999976
No 369
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.78 E-value=0.093 Score=44.77 Aligned_cols=25 Identities=16% Similarity=0.086 Sum_probs=21.6
Q ss_pred CceEEEEECCCCCchHHHHHHHHhc
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..--|+|+|.+|+|||||...+.+.
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999874
No 370
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.78 E-value=0.11 Score=50.05 Aligned_cols=24 Identities=17% Similarity=0.065 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+|+|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999999876
No 371
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.77 E-value=0.13 Score=43.66 Aligned_cols=23 Identities=9% Similarity=0.063 Sum_probs=20.2
Q ss_pred eEEEEECCCCCchHHHHHHHHhc
Q 041194 107 SMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
--|+|+|.+|+|||||...+.++
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998864
No 372
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.76 E-value=0.14 Score=48.18 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=26.3
Q ss_pred hHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 91 RMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 91 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.+++|.+.+. -.+++++|..|+|||||.+.+. .
T Consensus 155 gi~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 155 GIDELVDYLE-----GFICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp THHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH-S
T ss_pred CHHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH-H
Confidence 3566666653 2488999999999999999998 5
No 373
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.75 E-value=0.081 Score=45.17 Aligned_cols=22 Identities=5% Similarity=0.067 Sum_probs=19.8
Q ss_pred EEEEECCCCCchHHHHHHHHhc
Q 041194 108 MVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-|+|+|.+|+|||||...+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999874
No 374
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.75 E-value=0.093 Score=44.64 Aligned_cols=25 Identities=8% Similarity=0.093 Sum_probs=21.6
Q ss_pred CceEEEEECCCCCchHHHHHHHHhc
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..--|+|+|.+|+|||||...+.+.
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3456889999999999999999875
No 375
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.73 E-value=0.098 Score=44.75 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCchHHHHHHHHhc
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
....|+|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457899999999999999999875
No 376
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.73 E-value=0.093 Score=50.74 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHC
Confidence 45899999999999999999986
No 377
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.73 E-value=0.092 Score=51.14 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHc
Confidence 45899999999999999999976
No 378
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.72 E-value=0.19 Score=49.65 Aligned_cols=23 Identities=9% Similarity=0.189 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|+.|+|||||.+.+..
T Consensus 167 ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHh
Confidence 56999999999999999999877
No 379
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.70 E-value=0.11 Score=44.07 Aligned_cols=23 Identities=9% Similarity=0.016 Sum_probs=20.3
Q ss_pred eEEEEECCCCCchHHHHHHHHhc
Q 041194 107 SMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
--|+|+|.+|+|||||...+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999874
No 380
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.69 E-value=0.097 Score=45.01 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=21.7
Q ss_pred CceEEEEECCCCCchHHHHHHHHhc
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..--|+|+|.+|+|||||...+.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3456899999999999999999874
No 381
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.67 E-value=0.14 Score=44.00 Aligned_cols=26 Identities=8% Similarity=0.133 Sum_probs=22.3
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcC
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSS 130 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~ 130 (418)
..--|+|+|..|+|||||...+.++.
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34568999999999999999998753
No 382
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.65 E-value=0.097 Score=44.02 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=20.3
Q ss_pred eEEEEECCCCCchHHHHHHHHhc
Q 041194 107 SMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
--|+|+|..|+|||||...+.++
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999864
No 383
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.65 E-value=0.095 Score=50.73 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 45899999999999999999976
No 384
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.65 E-value=0.11 Score=44.00 Aligned_cols=24 Identities=13% Similarity=0.318 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..-|+|+|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 446889999999999999999875
No 385
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.64 E-value=0.089 Score=45.45 Aligned_cols=23 Identities=17% Similarity=0.059 Sum_probs=20.5
Q ss_pred eEEEEECCCCCchHHHHHHHHhc
Q 041194 107 SMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.-|+|+|.+|+|||||...+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46799999999999999999874
No 386
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.63 E-value=0.13 Score=44.52 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=21.6
Q ss_pred CceEEEEECCCCCchHHHHHHHHhc
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
...-|+|+|.+|+|||||...+..+
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999999875
No 387
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.62 E-value=0.077 Score=46.16 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=20.5
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...-|+|+|.+|+|||||...+.+
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 356789999999999999998853
No 388
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=91.61 E-value=0.095 Score=46.20 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~ 28 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAE 28 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH
Confidence 35899999999999999999998
No 389
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.58 E-value=0.2 Score=42.75 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 92 MEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 92 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..++.+ +... ...-|+|+|.+|+|||||...+.+.
T Consensus 5 ~~~~~~-~~~~--~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 5 FTRIWR-LFNH--QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHHH-HHTT--SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHH-hcCC--CccEEEEECCCCCCHHHHHHHHhcC
Confidence 344555 3332 3567899999999999999999863
No 390
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.58 E-value=0.052 Score=58.38 Aligned_cols=49 Identities=24% Similarity=0.192 Sum_probs=38.4
Q ss_pred CCCCCcccchhhHHHHHHHHhcC-----------CCCceEEEEECCCCCchHHHHHHHHh
Q 041194 80 SKSRDTVGLDDRMEKLLDLLIEG-----------PPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 80 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..-.+++|.++.++.|.+.+... -.....+.++|++|+||||||+.+.+
T Consensus 474 v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~ 533 (806)
T 1ypw_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp CSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHH
T ss_pred ccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHH
Confidence 34457789999999988877531 02345688999999999999999998
No 391
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.57 E-value=0.11 Score=45.18 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.8
Q ss_pred CceEEEEECCCCCchHHHHHHHHhc
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
...-|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3557899999999999999999875
No 392
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.56 E-value=0.099 Score=50.82 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|..|+|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCcHHHHHHHHHHc
Confidence 35899999999999999999986
No 393
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.54 E-value=0.074 Score=44.99 Aligned_cols=23 Identities=9% Similarity=0.120 Sum_probs=20.4
Q ss_pred eEEEEECCCCCchHHHHHHHHhc
Q 041194 107 SMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
--|+++|.+|+|||||...+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999999874
No 394
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.48 E-value=0.1 Score=50.73 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|+.|+|||||.+.+..
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 46899999999999999999976
No 395
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.45 E-value=0.11 Score=43.92 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|.+|+|||||...+.+.
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456899999999999999999874
No 396
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.43 E-value=0.11 Score=45.11 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.--|+|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999998874
No 397
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.43 E-value=0.11 Score=45.02 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|.+|+|||||...+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999999875
No 398
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.35 E-value=0.056 Score=56.01 Aligned_cols=47 Identities=19% Similarity=0.150 Sum_probs=34.2
Q ss_pred CCCcccchhhHHHHHHHHhcCCC---------CceEEEEECCCCCchHHHHHHHHh
Q 041194 82 SRDTVGLDDRMEKLLDLLIEGPP---------QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 82 ~~~~vGr~~~~~~l~~~L~~~~~---------~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+.++|.+..++.+.-.|..+.. ...-+.++|.+|+|||+||+.+.+
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~ 349 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISR 349 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSST
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHH
Confidence 46788988877666555544420 011478999999999999999887
No 399
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=91.34 E-value=0.097 Score=45.35 Aligned_cols=23 Identities=4% Similarity=0.186 Sum_probs=20.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..-|.|+|.+|+|||||.+.+.+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999997766
No 400
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.32 E-value=0.1 Score=53.38 Aligned_cols=23 Identities=17% Similarity=0.059 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|+.|+|||||++.+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHH
Confidence 46899999999999999999987
No 401
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.31 E-value=0.11 Score=44.61 Aligned_cols=24 Identities=8% Similarity=0.119 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345889999999999999999885
No 402
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.30 E-value=0.13 Score=50.07 Aligned_cols=23 Identities=9% Similarity=0.199 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|..|+|||||++.+..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 56899999999999999999876
No 403
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.27 E-value=0.073 Score=46.38 Aligned_cols=34 Identities=15% Similarity=0.038 Sum_probs=24.1
Q ss_pred HHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 95 LLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 95 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
+.+.+.-... ..-|+|+|.+|+|||||...+.++
T Consensus 15 ~l~~~~~~~~-~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 15 VLQFLGLYKK-TGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHTCTTC-CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHhhccCC-CcEEEEECCCCCCHHHHHHHHhcC
Confidence 4444432222 345789999999999999998763
No 404
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.27 E-value=0.11 Score=45.11 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=18.9
Q ss_pred eEEEEE-CCCCCchHHHHHHHHh
Q 041194 107 SMVAIL-DSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~-G~gGiGKTtLA~~v~~ 128 (418)
++|+|+ +-||+||||+|..+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~ 24 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIAT 24 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHH
Confidence 678888 7799999999988876
No 405
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.25 E-value=0.07 Score=46.64 Aligned_cols=23 Identities=17% Similarity=0.026 Sum_probs=20.6
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...|+|+|..|+|||||.+.+..
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46799999999999999998876
No 406
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.25 E-value=0.15 Score=44.45 Aligned_cols=24 Identities=8% Similarity=0.052 Sum_probs=20.9
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|.+|+|||||...+.++
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999998874
No 407
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.24 E-value=0.11 Score=44.96 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999875
No 408
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.23 E-value=0.12 Score=45.24 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=20.8
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
...|+|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456889999999999999999875
No 409
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.23 E-value=0.084 Score=50.83 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|+.|+|||||.+.+..
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCEEEEECCCCccHHHHHHHHHc
Confidence 45899999999999999999986
No 410
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.22 E-value=0.13 Score=44.18 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|.+|+|||||...+.+.
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999999874
No 411
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.20 E-value=0.11 Score=44.73 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999875
No 412
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.17 E-value=0.12 Score=44.42 Aligned_cols=24 Identities=13% Similarity=0.063 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|.+|+|||||...+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999999874
No 413
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.13 E-value=0.12 Score=44.15 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=22.3
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcC
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSS 130 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~ 130 (418)
...-|+|+|.+|+|||||...+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 35678999999999999999998753
No 414
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.11 E-value=0.12 Score=46.51 Aligned_cols=21 Identities=24% Similarity=0.115 Sum_probs=18.4
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.|.+.|.||+||||+|..+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~ 28 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAH 28 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 477899999999999888876
No 415
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.10 E-value=0.11 Score=45.20 Aligned_cols=24 Identities=25% Similarity=0.200 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..-|+|+|.+|+|||||...+.+.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 456899999999999999999875
No 416
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.10 E-value=0.12 Score=44.50 Aligned_cols=24 Identities=8% Similarity=0.074 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999999885
No 417
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.07 E-value=0.12 Score=44.90 Aligned_cols=22 Identities=14% Similarity=0.007 Sum_probs=18.8
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.++.|+|..|+||||++..+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999866655
No 418
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.07 E-value=0.13 Score=44.56 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..-|+|+|.+|+|||||...+.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 567899999999999999999874
No 419
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.04 E-value=0.13 Score=43.96 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|.+|+|||||...+.+.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999999875
No 420
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.03 E-value=0.12 Score=44.33 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=20.9
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999999874
No 421
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.03 E-value=0.13 Score=43.99 Aligned_cols=24 Identities=8% Similarity=0.104 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..-|+|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999999864
No 422
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.03 E-value=0.13 Score=51.55 Aligned_cols=23 Identities=9% Similarity=0.130 Sum_probs=20.9
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|.++|++|+||||+|+.+..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 423
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=91.02 E-value=0.091 Score=49.46 Aligned_cols=20 Identities=15% Similarity=0.390 Sum_probs=18.5
Q ss_pred EEEECCCCCchHHHHHHHHh
Q 041194 109 VAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~ 128 (418)
|+|+|.+|+|||||.+.++.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 49999999999999999886
No 424
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.99 E-value=0.11 Score=44.61 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|.+|+|||||...+.++
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 446889999999999999999874
No 425
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.99 E-value=0.12 Score=44.71 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=20.5
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999999874
No 426
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.97 E-value=0.11 Score=45.55 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|.+|+|||||...+.+.
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999875
No 427
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.96 E-value=0.12 Score=46.59 Aligned_cols=23 Identities=17% Similarity=0.097 Sum_probs=20.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..-++|.|++|+||||+|+.+..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 45689999999999999999987
No 428
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.96 E-value=0.16 Score=45.60 Aligned_cols=24 Identities=13% Similarity=-0.008 Sum_probs=22.1
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
....|.|.|..|+||||+++.+.+
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999988
No 429
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.93 E-value=0.11 Score=45.39 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=21.5
Q ss_pred CceEEEEECCCCCchHHHHHHHHhc
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..--|+|+|.+|+|||||...+.+.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3457899999999999999998874
No 430
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.88 E-value=0.093 Score=50.75 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=20.7
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+++|+|..|+|||||++.+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999988
No 431
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.87 E-value=0.12 Score=44.57 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 456899999999999999999874
No 432
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.82 E-value=0.078 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|+.|+|||||.+.+.-
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999976
No 433
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.81 E-value=0.17 Score=45.91 Aligned_cols=37 Identities=11% Similarity=0.032 Sum_probs=26.5
Q ss_pred ceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
..+|.|.|..|+||||+++.+...-. ...+.......
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeec
Confidence 46899999999999999999987321 12344334444
No 434
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.81 E-value=0.13 Score=46.30 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=22.5
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcC
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSS 130 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~ 130 (418)
...-|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 35678999999999999999998753
No 435
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.81 E-value=0.13 Score=49.63 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=20.2
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+++|+|+.|+|||||.+.+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4999999999999999998866
No 436
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.80 E-value=0.12 Score=49.74 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.9
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-.+++|+|..|+|||||.+.+.+.
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999984
No 437
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.80 E-value=0.18 Score=44.91 Aligned_cols=52 Identities=10% Similarity=-0.015 Sum_probs=31.7
Q ss_pred eEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHH
Q 041194 107 SMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIK 161 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~ 161 (418)
..|.|-|..|+||||+++.+.+.-. ...+....+.. -.......+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~-~~~~~~v~~~r--ep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE-QLGIRDMVFTR--EPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH-HTTCCCEEEEE--SSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-HcCCCcceeee--CCCCCHHHHHHHHHHh
Confidence 5899999999999999999987321 12332334444 2222223445555554
No 438
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=90.79 E-value=0.16 Score=45.24 Aligned_cols=25 Identities=8% Similarity=0.226 Sum_probs=22.0
Q ss_pred CceEEEEECCCCCchHHHHHHHHhc
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
...-|+|+|.+|+|||||...+.+.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999874
No 439
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.76 E-value=0.14 Score=43.95 Aligned_cols=26 Identities=12% Similarity=0.041 Sum_probs=22.3
Q ss_pred CCceEEEEECCCCCchHHHHHHHHhc
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
....-|+|+|.+|+|||||...+.+.
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 34678999999999999999999874
No 440
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.70 E-value=0.12 Score=50.49 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|+.|+|||||.+.+..
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 46899999999999999999986
No 441
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.65 E-value=0.21 Score=46.92 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=26.4
Q ss_pred hHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 91 RMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 91 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.++++.+++. -.+++|+|+.|+|||||.+.+..
T Consensus 159 gv~~lf~~l~-----geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 159 GIEELKEYLK-----GKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp THHHHHHHHS-----SSEEEEECSTTSSHHHHHHHHST
T ss_pred CHHHHHHHhc-----CCeEEEECCCCCcHHHHHHHhcc
Confidence 3556666663 24899999999999999999987
No 442
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=90.65 E-value=0.15 Score=47.93 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=22.0
Q ss_pred CceEEEEECCCCCchHHHHHHHHhc
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
....|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3468999999999999999999874
No 443
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.55 E-value=0.11 Score=46.79 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=18.4
Q ss_pred EEEEECCCCCchHHHHHHHHh
Q 041194 108 MVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.|+|.|-||+||||+|..+..
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~ 22 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIK 22 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHH
Confidence 367799999999999998877
No 444
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.52 E-value=0.12 Score=46.52 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=18.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-..|.|-|+.|+||||+++.+.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999988
No 445
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=90.52 E-value=0.18 Score=44.46 Aligned_cols=24 Identities=8% Similarity=-0.029 Sum_probs=21.5
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+|+|+|+.|+||+|.|..+-+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHH
Confidence 467999999999999999988866
No 446
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.52 E-value=0.13 Score=44.77 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=20.9
Q ss_pred CceEEEEECCCCCchHHHHHHHHhc
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..--|+|+|.+|+|||||...+.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999998764
No 447
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.49 E-value=0.14 Score=44.50 Aligned_cols=24 Identities=8% Similarity=0.156 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..-|+|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999874
No 448
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.45 E-value=0.27 Score=49.00 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=26.3
Q ss_pred hhHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHh
Q 041194 90 DRMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 90 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+.++.+.+.+..++ ..+.|.|.+|+||||++..+..
T Consensus 32 ~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 32 NAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp HHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHH
Confidence 33444444554443 3899999999999999998887
No 449
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.43 E-value=0.15 Score=44.63 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..-|+|+|.+|+|||||...+.++
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999999874
No 450
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.41 E-value=0.12 Score=44.52 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|..|+|||||...+.++
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999999764
No 451
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=90.39 E-value=0.15 Score=45.29 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..-|+|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45689999999999999999874
No 452
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=90.35 E-value=0.13 Score=45.25 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=20.5
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|.+|+|||||...+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999999864
No 453
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=90.32 E-value=0.16 Score=45.29 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.4
Q ss_pred EEEEECCCCCchHHHHHHHHhc
Q 041194 108 MVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 108 vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-|.|+|-+|+|||+|...+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4779999999999999998764
No 454
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=90.31 E-value=0.27 Score=48.01 Aligned_cols=26 Identities=15% Similarity=0.040 Sum_probs=21.4
Q ss_pred CCCceEEEEE-CCCCCchHHHHHHHHh
Q 041194 103 PPQRSMVAIL-DSIGLDKTAFATEAYN 128 (418)
Q Consensus 103 ~~~~~vi~I~-G~gGiGKTtLA~~v~~ 128 (418)
....++|+|+ |-||+||||+|..+..
T Consensus 105 ~~~~~vIav~s~KGGvGKTT~a~nLA~ 131 (398)
T 3ez2_A 105 YSEAYVIFISNLKGGVSKTVSTVSLAH 131 (398)
T ss_dssp CCSCEEEEECCSSSSSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCccHHHHHHHHHH
Confidence 3457888888 7899999998887766
No 455
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.30 E-value=0.16 Score=45.58 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=30.8
Q ss_pred CceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHH
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIV 159 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~i 159 (418)
.-.++.|.|.+|+|||+||.++..+. ..+.-...++++ . ..+..++.+.+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s--~--E~~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVT--L--EERARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEE--S--SSCHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeec--c--cCCHHHHHHHH
Confidence 35689999999999999998865421 111112345555 3 34455555554
No 456
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.25 E-value=0.16 Score=44.31 Aligned_cols=24 Identities=8% Similarity=0.196 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..-|+|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999999864
No 457
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.25 E-value=0.098 Score=44.37 Aligned_cols=24 Identities=21% Similarity=0.094 Sum_probs=20.8
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...-|+|+|.+|+|||||...+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 356788999999999999998875
No 458
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.24 E-value=0.13 Score=44.35 Aligned_cols=24 Identities=8% Similarity=-0.029 Sum_probs=20.8
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|.+|+|||||...+.+.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999998763
No 459
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.19 E-value=0.16 Score=44.29 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=21.7
Q ss_pred CceEEEEECCCCCchHHHHHHHHhc
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..--|+|+|.+|+|||||...+.+.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 3567899999999999999999874
No 460
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=90.18 E-value=0.13 Score=43.79 Aligned_cols=24 Identities=17% Similarity=0.018 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|..|+|||||...+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999874
No 461
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.18 E-value=0.15 Score=50.49 Aligned_cols=21 Identities=19% Similarity=0.457 Sum_probs=19.5
Q ss_pred EEEECCCCCchHHHHHHHHhc
Q 041194 109 VAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~d 129 (418)
++|+|..|+|||||.+.++.-
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999999763
No 462
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=90.16 E-value=0.21 Score=43.97 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=20.9
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|.+|+|||||...+.+.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999999875
No 463
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.16 E-value=0.15 Score=43.88 Aligned_cols=24 Identities=13% Similarity=0.069 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..-|+|+|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999875
No 464
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.15 E-value=0.16 Score=44.42 Aligned_cols=24 Identities=8% Similarity=-0.079 Sum_probs=20.9
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|.+|+|||||...+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999999874
No 465
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.13 E-value=0.16 Score=44.09 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..-|+|+|.+|+|||||...+.++
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999999874
No 466
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=90.12 E-value=0.31 Score=48.31 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=33.6
Q ss_pred ccchhhHHHHHHHHhcC---------CCCceEEEEECCCCCchHHHHHHHHhc
Q 041194 86 VGLDDRMEKLLDLLIEG---------PPQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 86 vGr~~~~~~l~~~L~~~---------~~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.|.++-.+.|.+.+... .+...-|+|+|.+|+|||||.+.+...
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 46677777777777532 123468999999999999999999874
No 467
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=90.11 E-value=0.17 Score=46.55 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999864
No 468
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.09 E-value=0.31 Score=43.50 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-..|.+-|..|+||||+++.+.+
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~ 27 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYK 27 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999998
No 469
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.07 E-value=0.11 Score=49.71 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=25.5
Q ss_pred eEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeee
Q 041194 107 SMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWIT 143 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~ 143 (418)
.+++|+|..|+|||||++.+.. .+.. -...+.+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g--~~~~-~~g~i~i~ 205 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIME--FIPK-EERIISIE 205 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGG--GSCT-TSCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhC--CCcC-CCcEEEEC
Confidence 4899999999999999999988 3322 23455555
No 470
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.06 E-value=0.1 Score=44.36 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=10.4
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|.+|+|||||...+.++
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999988764
No 471
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.05 E-value=0.17 Score=48.92 Aligned_cols=22 Identities=9% Similarity=0.208 Sum_probs=20.6
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+++|+|.+|+|||||.+.+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHhc
Confidence 4899999999999999999987
No 472
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=90.02 E-value=0.19 Score=47.31 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=23.3
Q ss_pred CCceEEEEECCCCCchHHHHHHHHhc
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
+....|+|+|.+|+|||||...+...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45789999999999999999999874
No 473
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=89.98 E-value=0.18 Score=44.52 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=17.7
Q ss_pred EEEEE-CCCCCchHHHHHHHHh
Q 041194 108 MVAIL-DSIGLDKTAFATEAYN 128 (418)
Q Consensus 108 vi~I~-G~gGiGKTtLA~~v~~ 128 (418)
+|+|+ +-||+||||+|..+..
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~ 23 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSA 23 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHH
Confidence 56665 7899999999998877
No 474
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=89.97 E-value=0.19 Score=51.76 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+|.|.|++|+||||+|+.+..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~ 418 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQV 418 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 475
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=89.93 E-value=0.18 Score=52.26 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=22.0
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+|.|.|+.|+||||+|+.+..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~ 74 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEE 74 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 467899999999999999999987
No 476
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=89.90 E-value=0.26 Score=50.41 Aligned_cols=24 Identities=17% Similarity=-0.072 Sum_probs=21.7
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
...+|.+.|++|+||||+|+.+..
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~ 394 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILAT 394 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 477
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=89.89 E-value=0.22 Score=48.24 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=21.3
Q ss_pred CCceEEEEEC-CCCCchHHHHHHHHh
Q 041194 104 PQRSMVAILD-SIGLDKTAFATEAYN 128 (418)
Q Consensus 104 ~~~~vi~I~G-~gGiGKTtLA~~v~~ 128 (418)
...++|+|+| -||+||||+|..+..
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~ 166 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAI 166 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHH
Confidence 4678999985 999999999987765
No 478
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.88 E-value=0.13 Score=51.47 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|..|+|||||++.+..
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999987
No 479
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=89.86 E-value=0.17 Score=44.38 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999874
No 480
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=89.74 E-value=0.71 Score=41.25 Aligned_cols=103 Identities=15% Similarity=0.084 Sum_probs=52.1
Q ss_pred hHHHHHHHHhcCCCCceEEEEECCCCCchHHHHHHHHhc-CCCCCCc-ceeeeeecCCCCCCCHHHHHHHHHHHhCCCCC
Q 041194 91 RMEKLLDLLIEGPPQRSMVAILDSIGLDKTAFATEAYNS-SYVKHYF-DCHAWITEPYSNEYDADQILDIVIKFLMPSSR 168 (418)
Q Consensus 91 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~d-~~~~~~F-~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~ 168 (418)
..++++..+..+ +.+.|.|..|+||||+.....-+ ....... .+.+.+. .........+.+.+...++....
T Consensus 65 ~q~~~i~~i~~g----~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~--~p~~~la~q~~~~~~~~~~~~~~ 138 (235)
T 3llm_A 65 FESEILEAISQN----SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVT--QPRRISAVSVAERVAFERGEEPG 138 (235)
T ss_dssp GHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEE--ESSHHHHHHHHHHHHHTTTCCTT
T ss_pred HHHHHHHHHhcC----CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEe--ccchHHHHHHHHHHHHHhccccC
Confidence 345555555544 48899999999999865544321 1111222 2233332 22222333455555554443210
Q ss_pred c----------------cccccCCHHHHHHHHHHHhccCcEEEEEecc
Q 041194 169 L----------------SEIMDKNYEMKKIILHEYLMTKRYLIVIDDF 200 (418)
Q Consensus 169 ~----------------~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv 200 (418)
. ...--.+...+...+...+.+- =+||+|.+
T Consensus 139 ~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEa 185 (235)
T 3llm_A 139 KSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGI-SHVIVDEI 185 (235)
T ss_dssp SSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTC-CEEEECCT
T ss_pred ceEEEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCC-cEEEEECC
Confidence 0 0011235566666666654443 36788986
No 481
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.72 E-value=0.51 Score=54.35 Aligned_cols=88 Identities=16% Similarity=0.048 Sum_probs=60.2
Q ss_pred CCceEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhCCCCCccc-cccCCHHHHHH
Q 041194 104 PQRSMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSE-IMDKNYEMKKI 182 (418)
Q Consensus 104 ~~~~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~~~~~~~~-~~~~~~~~l~~ 182 (418)
+.-++|-|+|+.|+||||||.++.. +.+..=...+|+. .....+..- ++.++.+.+.-- ..+.+.++...
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~--~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~ 1499 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFID--AEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALE 1499 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEC--TTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEe--cCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHH
Confidence 4568999999999999999999886 3333334567888 776666653 677776432111 23344566666
Q ss_pred HHHHHhcc-CcEEEEEecc
Q 041194 183 ILHEYLMT-KRYLIVIDDF 200 (418)
Q Consensus 183 ~l~~~L~~-kr~LlVLDDv 200 (418)
.+...++. .--+||+|-|
T Consensus 1500 ~~~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1500 ICDALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHHHHTCCSEEEESCS
T ss_pred HHHHHHHcCCCCEEEEccH
Confidence 66666654 5569999988
No 482
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=89.69 E-value=0.28 Score=45.37 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
...|+++|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 457899999999999999999874
No 483
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=89.64 E-value=0.24 Score=42.27 Aligned_cols=34 Identities=21% Similarity=0.025 Sum_probs=24.7
Q ss_pred HHHHHhcCC-CCceEEEEECCCCCchHHHHHHHHh
Q 041194 95 LLDLLIEGP-PQRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 95 l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
+.++|.--. ...--|+|+|.+|+|||||...+.+
T Consensus 10 ~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 10 LKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp HHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred HHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHc
Confidence 455443322 3455689999999999999998865
No 484
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.63 E-value=0.18 Score=51.58 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.6
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-.+++|+|..|+|||||++.++.-
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999973
No 485
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=89.61 E-value=0.72 Score=55.57 Aligned_cols=52 Identities=17% Similarity=0.258 Sum_probs=36.2
Q ss_pred eEEEEECCCCCchHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCHHHHHHHHHHHhC
Q 041194 107 SMVAILDSIGLDKTAFATEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLM 164 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~d~~~~~~F~~~~wv~~~vs~~~~~~~ll~~il~~l~ 164 (418)
+-+.++|++|+|||++|+.+... .. .+. ...++ .|...+...+++.+-..+.
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~--~~-~~~-~~~in--fsa~ts~~~~~~~i~~~~~ 1319 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRN--SS-LYD-VVGIN--FSKDTTTEHILSALHRHTN 1319 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS--CS-SCE-EEEEE--CCTTCCHHHHHHHHHHHBC
T ss_pred CeEEEECCCCCCHHHHHHHHHhc--CC-CCc-eEEEE--eecCCCHHHHHHHHHHHhh
Confidence 56789999999999999877763 22 232 34566 6777777777666655544
No 486
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=89.55 E-value=0.12 Score=44.32 Aligned_cols=24 Identities=21% Similarity=0.030 Sum_probs=20.8
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999998774
No 487
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=89.55 E-value=0.22 Score=47.93 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=21.0
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+++.+.|.||+||||+|..+..
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~ 40 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAV 40 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Confidence 468999999999999999988765
No 488
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.54 E-value=0.16 Score=51.80 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|..|+|||||++.++.
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999987
No 489
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.39 E-value=0.25 Score=41.23 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=19.9
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+.+|+|..|.||||+...++-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999999988764
No 490
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=89.36 E-value=0.2 Score=50.26 Aligned_cols=22 Identities=9% Similarity=0.052 Sum_probs=20.7
Q ss_pred eEEEEECCCCCchHHHHHHHHh
Q 041194 107 SMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 107 ~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.+++|+|..|+|||||.+.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 7999999999999999999976
No 491
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.30 E-value=0.19 Score=51.28 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
-.+++|+|..|+|||||++.+..
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999986
No 492
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.25 E-value=0.19 Score=50.01 Aligned_cols=24 Identities=8% Similarity=0.130 Sum_probs=21.8
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-.+++|+|..|+|||||++.+.+.
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999984
No 493
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=89.20 E-value=0.43 Score=45.56 Aligned_cols=24 Identities=13% Similarity=-0.009 Sum_probs=20.7
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+++.+.|.||+||||+|..+..
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~ 38 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAI 38 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHH
Confidence 367888899999999999988875
No 494
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.06 E-value=0.18 Score=49.76 Aligned_cols=21 Identities=14% Similarity=0.395 Sum_probs=19.2
Q ss_pred EEEECCCCCchHHHHHHHHhc
Q 041194 109 VAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 109 i~I~G~gGiGKTtLA~~v~~d 129 (418)
|+|+|..|+|||||.+.++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 499999999999999999874
No 495
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=89.00 E-value=0.22 Score=44.04 Aligned_cols=25 Identities=8% Similarity=0.171 Sum_probs=21.5
Q ss_pred CceEEEEECCCCCchHHHHHHHHhc
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
..--|+|+|.+|+|||||...+.+.
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3456899999999999999999874
No 496
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=88.99 E-value=0.23 Score=44.52 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=21.6
Q ss_pred ceEEEEECCCCCchHHHHHHHHh
Q 041194 106 RSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
..+|+|.|+.|+||||+|+.+..
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~ 36 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAE 36 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999999988
No 497
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.94 E-value=0.2 Score=51.08 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=21.7
Q ss_pred CceEEEEECCCCCchHHHHHHHHh
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYN 128 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~ 128 (418)
.-.+++|+|..|+|||||.+.+..
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 357999999999999999999986
No 498
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=88.93 E-value=0.22 Score=45.17 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
.--|+++|.+|+|||||...+...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 456899999999999999999874
No 499
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.89 E-value=0.21 Score=51.74 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.6
Q ss_pred ceEEEEECCCCCchHHHHHHHHhc
Q 041194 106 RSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 106 ~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
-.+++|+|..|+|||||.+.+..-
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999873
No 500
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=88.89 E-value=0.25 Score=46.38 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=21.9
Q ss_pred CceEEEEECCCCCchHHHHHHHHhc
Q 041194 105 QRSMVAILDSIGLDKTAFATEAYNS 129 (418)
Q Consensus 105 ~~~vi~I~G~gGiGKTtLA~~v~~d 129 (418)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999874
Done!