BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041195
         (195 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1HBX|G Chain G, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
 pdb|1HBX|H Chain H, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
          Length = 157

 Score = 30.0 bits (66), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 98  MTFIELARP--QWYERALVFAVQGVFFNAYFLAY----LASPKLAHRIVGYLEEEAVNSY 151
           M + +L+R    +Y + ++  V G  F   F++Y       P    RI G  E    +  
Sbjct: 55  MNYDKLSRALRYYYVKNIIKKVNGQKFVYKFVSYPEILNMDPMTVGRIEGDCESLNFSEV 114

Query: 152 TEFLKDLENGSFENAPAPA 170
           +   KD+ENG  +  P P 
Sbjct: 115 SSSSKDVENGGKDKPPQPG 133


>pdb|3DLM|A Chain A, Crystal Structure Of Tudor Domain Of Human Histone-Lysine
           N- Methyltransferase Setdb1
          Length = 213

 Score = 28.5 bits (62), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 48  CHAMLLETVGAVPG--MVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELAR 105
           C   + E V A P   MV   LL    L K E  G W K+ +EE +   + ++ F++  R
Sbjct: 140 CRDFIEEYVTAYPNRPMV---LLKSGQLIKTEWEGTWWKSRVEEVDGSLVRIL-FLDDKR 195

Query: 106 PQWYERA 112
            +W  R 
Sbjct: 196 CEWIYRG 202


>pdb|2X0O|A Chain A, Apo Structure Of The Alcaligin Biosynthesis Protein C
           (Alcc) From Bordetella Bronchiseptica
 pdb|2X0P|A Chain A, Co-Complex Structure Of Alcaligin Biosynthetase Protein C
           (Alcc) With Adenosine From Bordetella Bronchiseptica
 pdb|2X0Q|A Chain A, Co-Complex Structure Of Alcaligin  Biosynthesis Protein C
           (Alcc) With Atp From Bordetella Bronchiseptica
          Length = 618

 Score = 26.9 bits (58), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 12/41 (29%), Positives = 23/41 (56%)

Query: 150 SYTEFLKDLENGSFENAPAPAIAIDYWRLPPDSTLRDVVVV 190
            +  F   L +G+  +  A  +A+ +WR+PP+S ++ V  V
Sbjct: 54  GFERFRLTLADGAQYDFDAQVMAMRHWRIPPESIVKTVAGV 94


>pdb|3AHX|A Chain A, Crystal Structure Of Beta-Glucosidase A From Bacterium
           Clostridium Cellulovorans
 pdb|3AHX|B Chain B, Crystal Structure Of Beta-Glucosidase A From Bacterium
           Clostridium Cellulovorans
 pdb|3AHX|C Chain C, Crystal Structure Of Beta-Glucosidase A From Bacterium
           Clostridium Cellulovorans
 pdb|3AHX|D Chain D, Crystal Structure Of Beta-Glucosidase A From Bacterium
           Clostridium Cellulovorans
          Length = 453

 Score = 26.9 bits (58), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 130 LASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPPDSTLRDV 187
           +A P++  +  G + ++ +    +F +DL +   +N   PAI I +W LP    L+D+
Sbjct: 80  IAWPRIFPKGFGEINQKGI----QFYRDLIDELIKNDIEPAITIYHWDLP--QKLQDI 131


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.137    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,026,465
Number of Sequences: 62578
Number of extensions: 231652
Number of successful extensions: 735
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 734
Number of HSP's gapped (non-prelim): 5
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)