Query 041195
Match_columns 195
No_of_seqs 115 out of 349
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 04:43:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041195.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041195hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02478 alternative oxidase 100.0 8.5E-92 1.8E-96 621.4 19.7 195 1-195 104-298 (328)
2 PF01786 AOX: Alternative oxid 100.0 1.4E-85 3.1E-90 558.2 18.4 191 5-195 3-195 (207)
3 cd01053 AOX Alternative oxidas 100.0 2E-78 4.3E-83 500.0 17.2 154 42-195 1-154 (168)
4 PF03232 COQ7: Ubiquinone bios 95.5 0.092 2E-06 44.0 8.4 94 83-195 34-133 (172)
5 cd07908 Mn_catalase_like Manga 94.7 0.092 2E-06 41.7 5.9 121 51-195 17-143 (154)
6 cd01042 DMQH Demethoxyubiquino 94.5 0.26 5.7E-06 41.1 8.5 93 81-195 29-127 (165)
7 cd01045 Ferritin_like_AB Uncha 91.0 5 0.00011 29.6 10.7 86 73-159 20-113 (139)
8 COG2941 CAT5 Ubiquinone biosyn 89.3 3.7 8.1E-05 35.6 9.2 90 83-195 72-167 (204)
9 cd01051 Mn_catalase Manganese 83.5 4 8.7E-05 33.4 6.2 115 51-195 24-141 (156)
10 cd01044 Ferritin_CCC1_N Ferrit 82.8 16 0.00035 28.0 9.1 77 73-157 20-101 (125)
11 cd00657 Ferritin_like Ferritin 67.2 39 0.00084 23.4 7.2 89 79-195 26-119 (130)
12 PF13413 HTH_25: Helix-turn-he 55.1 10 0.00022 26.4 2.1 25 152-176 24-48 (62)
13 PF06480 FtsH_ext: FtsH Extrac 28.0 19 0.00041 25.6 -0.1 19 147-165 28-46 (110)
14 KOG1525 Sister chromatid cohes 26.7 3.7E+02 0.0081 29.5 9.0 101 44-145 112-266 (1266)
15 COG1614 CdhC CO dehydrogenase/ 25.3 9.4 0.0002 36.1 -2.6 26 59-84 325-350 (470)
16 PRK00046 murB UDP-N-acetylenol 25.2 38 0.00082 31.2 1.3 17 52-68 108-124 (334)
17 KOG4014 Uncharacterized conser 25.2 74 0.0016 28.1 3.0 51 132-182 33-102 (248)
18 PRK13456 DNA protection protei 23.6 81 0.0018 27.0 2.9 116 47-195 25-151 (186)
19 PF14518 Haem_oxygenas_2: Iron 23.0 2.2E+02 0.0048 20.6 4.9 88 83-178 2-103 (106)
20 PF07526 POX: Associated with 22.0 67 0.0015 26.0 2.0 58 18-75 65-136 (140)
21 PRK14648 UDP-N-acetylenolpyruv 21.9 43 0.00093 31.3 1.0 16 53-68 120-135 (354)
22 PRK14892 putative transcriptio 21.4 55 0.0012 25.2 1.4 20 145-164 60-79 (99)
23 cd02900 Macro_Appr_pase Macro 21.3 54 0.0012 27.7 1.4 48 145-192 134-183 (186)
24 PLN02975 complex I subunit 20.5 82 0.0018 24.4 2.1 40 105-147 51-90 (97)
No 1
>PLN02478 alternative oxidase
Probab=100.00 E-value=8.5e-92 Score=621.36 Aligned_cols=195 Identities=79% Similarity=1.324 Sum_probs=194.3
Q ss_pred CCcccccccccccccCCCCCCcchHHHHHHHHHhhhhhhhhccccccchhhhhhhhcCCCchHHHHHHHHHHhhccccCc
Q 041195 1 PWETYKADLSINVTKHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVPGMVGGMLLHCKSLRKFEHSG 80 (195)
Q Consensus 1 p~~~y~~~~~i~~~~H~~P~~~~D~~A~~~vk~lr~~~D~~~~~r~~~R~~~LETVA~VPgmv~~~~~HL~slr~m~rd~ 80 (195)
||++|+.+.++++.+|++|++++||+|+++||+||+++|++|++||++||+||||||||||||++|++||+|||+|+||+
T Consensus 104 p~~~y~~~~~~~~~~H~~P~~~~Dk~A~~~Vk~lR~~~D~~f~~R~~~R~ifLETVA~VPGmV~gmlrHL~SLRr~krd~ 183 (328)
T PLN02478 104 PWETYKADLSIDLKKHHVPKTLLDKIAYWTVKSLRVPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRRFEHSG 183 (328)
T ss_pred CCccccHhhhchhhcCCCCCchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhcCchHHHHHHHHHHHHhhhhccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhhhhhhhHHHHHHHHHHHhhhC
Q 041195 81 GWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLEN 160 (195)
Q Consensus 81 gwI~~lleEaeNErmHLl~~~~l~~p~~~~R~lv~~~Q~vf~~~~~~~Yl~sPr~ahrfvgylEEeAv~tYt~~l~~i~~ 160 (195)
||||+|||||||||||||||+++++|+|++|++++++|++|||+||++|++|||+|||||||||||||+|||+||++||+
T Consensus 184 gWIrtLLeEAeNERMHLLtf~~l~~p~w~eR~lv~~aQgvf~~~ff~~YLiSPr~aHRfvGYLEEEAV~TYT~~L~eid~ 263 (328)
T PLN02478 184 GWIKALLEEAENERMHLMTFMEVAKPKWYERALVIAVQGVFFNAYFLGYLISPKFAHRIVGYLEEEAIHSYTEFLKDLDA 263 (328)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHhhhCCCCCCcHHHHHHHhhcCC
Q 041195 161 GSFENAPAPAIAIDYWRLPPDSTLRDVVVVIRADE 195 (195)
Q Consensus 161 g~l~~~paP~iA~~Yw~lp~~atl~Dvi~~IRaDE 195 (195)
|+++|+|||+||++||+||+++||||||++||+||
T Consensus 264 G~l~n~pAP~IAi~YW~LP~~atLrDVi~~IRaDE 298 (328)
T PLN02478 264 GKIENVPAPAIAIDYWRLPADATLRDVVTVVRADE 298 (328)
T ss_pred CcccCCCCChHHHHHhCCCCCCcHHHHHHHHHhhh
Confidence 99999999999999999999999999999999998
No 2
>PF01786 AOX: Alternative oxidase; InterPro: IPR002680 The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transferred directly from reduced ubiquinol to oxygen forming water []. This is not coupled to ATP synthesis and is not inhibited by cyanide, this pathway is a single step process []. In Oryza sativa (Rice) the transcript levels of the alternative oxidase are increased by low temperature []. It has been predicted to contain a coupled diiron centre on the basis of a conserved sequence motif consisting of the proposed iron ligands, four Glu and two His residues []. The EPR study of Arabidopsis thaliana (Mouse-ear cress) alternative oxidase AOX1a shows that the enzyme contains a hydroxo-bridged mixed-valent Fe(II)/Fe(III) binuclear iron centre []. A catalytic cycle has been proposed that involves diiron centre and at least one transient protein-derived radical, most probably an invariant Tyr residue [].; GO: 0007585 respiratory gaseous exchange, 0055114 oxidation-reduction process, 0005740 mitochondrial envelope
Probab=100.00 E-value=1.4e-85 Score=558.18 Aligned_cols=191 Identities=55% Similarity=1.014 Sum_probs=186.5
Q ss_pred cccccccccc-cCCCCCCcchHHHHHHHHHhhhhhhhhccccccchhhhhhhhcCCCchHHHHHHHHHHhhccccCcchH
Q 041195 5 YKADLSINVT-KHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLETVGAVPGMVGGMLLHCKSLRKFEHSGGWI 83 (195)
Q Consensus 5 y~~~~~i~~~-~H~~P~~~~D~~A~~~vk~lr~~~D~~~~~r~~~R~~~LETVA~VPgmv~~~~~HL~slr~m~rd~gwI 83 (195)
||.++..++. +|++|++++|++|+++||+||+++|++|++||++|++||||||||||||++|++||+|||+||||+|||
T Consensus 3 ~~~~~~~~v~~~h~~p~~~~d~~A~~~v~~lr~~~D~~~~~r~~~R~~~LEtVA~VPg~v~~~~~Hl~slr~~~rd~g~I 82 (207)
T PF01786_consen 3 YTEEELESVQVTHREPKTFSDRVAYGIVKFLRWFFDLLFEKRWLHRFIFLETVAGVPGMVGGMVRHLRSLRRMKRDGGWI 82 (207)
T ss_pred CCHHHHhhcccccCCCCcHHHHHHHHHHHHHHHHHHHhccccchhheeeeeecccCChHHHHHHHHHHHHhCCCCCCcHH
Confidence 5666666666 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhhhhhhhHHHHHHHHHHHhhhCCCC
Q 041195 84 KALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSF 163 (195)
Q Consensus 84 ~~lleEaeNErmHLl~~~~l~~p~~~~R~lv~~~Q~vf~~~~~~~Yl~sPr~ahrfvgylEEeAv~tYt~~l~~i~~g~l 163 (195)
|+|+|||||||||||||++|+||+|++|++++++|++|||+|+++|++|||+|||||||+|||||+|||+||+|||+|++
T Consensus 83 ~~lleEaeNErmHLli~~~l~~p~~~~R~lv~~~q~vf~~~~~~~Yl~sPr~ahrfvgylEeeAv~tYt~~l~di~~g~l 162 (207)
T PF01786_consen 83 KTLLEEAENERMHLLIFEELGKPSWFDRFLVLHAQGVFYNIFFLLYLVSPRTAHRFVGYLEEEAVHTYTEFLEDIDEGKL 162 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHhhhCCCC-CCcHHHHHHHhhcCC
Q 041195 164 ENAPAPAIAIDYWRLPP-DSTLRDVVVVIRADE 195 (195)
Q Consensus 164 ~~~paP~iA~~Yw~lp~-~atl~Dvi~~IRaDE 195 (195)
+|+|||+||++||+||+ ++||||||++||+||
T Consensus 163 ~~~paP~iAi~Yw~l~~~~atlrDvi~~IRaDE 195 (207)
T PF01786_consen 163 PNMPAPEIAIDYWGLPELDATLRDVILAIRADE 195 (207)
T ss_pred CCCCCCHHHHHHhCCCccCchHHHHHHHHHhhH
Confidence 99999999999999999 999999999999998
No 3
>cd01053 AOX Alternative oxidase, ferritin-like diiron-binding domain. Alternative oxidase (AOX) is a mitochondrial ubiquinol oxidase found in plants and some fungi and protists. AOX is a member of the ferritin-like diiron-carboxylate superfamily. The plant mitochondrial protein alternative oxidase catalyses dioxygen dependent ubiquinol oxidation to yield ubiquinone and water. AOX is a cyanide-resistant, salicylhydroxamic acid-sensitive oxidase that transfers electrons from ubiquinol to oxygen, bypassing the cytochrome chain. AOX has been proposed to contain a hydroxo-bridged diiron center within a four-helix bundle and a proximal redox-active tyrosine residue. AOX is proposed to be peripherally associated with the matrix side of the inner mitochondrial membrane. Fungal and protozoan AOXs generally exist as monomers. In plants, AOX is dimeric. Pyruvate is an allosteric activator of plant AOX involved in the reversible inactivation of the enzyme though the formation of an intermolecular
Probab=100.00 E-value=2e-78 Score=499.99 Aligned_cols=154 Identities=62% Similarity=1.009 Sum_probs=152.7
Q ss_pred ccccccchhhhhhhhcCCCchHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 041195 42 FQRRHMCHAMLLETVGAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVF 121 (195)
Q Consensus 42 ~~~r~~~R~~~LETVA~VPgmv~~~~~HL~slr~m~rd~gwI~~lleEaeNErmHLl~~~~l~~p~~~~R~lv~~~Q~vf 121 (195)
|++||++||+||||||||||||++|++||+|||+||||+||||+|||||||||||||||+++++|++++|.++..+|++|
T Consensus 1 ~~~r~~~R~~~LEtVA~vPgmv~~~~~HL~slr~~~rd~~wi~~lleEaeNErmHLltf~~l~~p~~~~r~~v~~~q~vf 80 (168)
T cd01053 1 YEDRWLARFIFLETVARVPGMVAGMLLHLYSLRGMWRDGGWIKTLLEEAENERMHLLIFEELGGPGWWFRRFVAQHQAVF 80 (168)
T ss_pred CCCcceehhhhhhHhccCcHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhChhhHHHhhhhhhhHHHHHHHHHHHhhhCCCCCCCCCCHHHHhhhCCCCCCcHHHHHHHhhcCC
Q 041195 122 FNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPPDSTLRDVVVVIRADE 195 (195)
Q Consensus 122 ~~~~~~~Yl~sPr~ahrfvgylEEeAv~tYt~~l~~i~~g~l~~~paP~iA~~Yw~lp~~atl~Dvi~~IRaDE 195 (195)
||+|+++|++|||+|||||||||||||+|||+||++||+|+++|+|||+||++||++|+++||||||++||+||
T Consensus 81 y~~~~~~YlisPr~ahrfvgylEEeAV~TYt~~L~~id~g~~~~~paP~iAi~Yw~l~~~atl~Dvi~~IR~DE 154 (168)
T cd01053 81 YNAYFLLYLISPRLAHRFVGYLEEEAVDTYTEFLKDIEEGLKPDLPAPEIAIEYYRLGEDATLYDVFVAIRADE 154 (168)
T ss_pred HHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhccccCCCCCCHHHHHHhCCCCCCcHHHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998
No 4
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=95.50 E-value=0.092 Score=43.98 Aligned_cols=94 Identities=27% Similarity=0.331 Sum_probs=68.5
Q ss_pred HHHHHHHH-HHHHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhhhhhhhHHHHHHHHHHH
Q 041195 83 IKALLEEA-ENERMHLMTFIELA-----RPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLK 156 (195)
Q Consensus 83 I~~lleEa-eNErmHLl~~~~l~-----~p~~~~R~lv~~~Q~vf~~~~~~~Yl~sPr~ahrfvgylEEeAv~tYt~~l~ 156 (195)
++..+.|. ++|..||..|.++- .|+++.=+. .-+. |.+=++.=++.++.+.-++.-+|+....-|.+-|+
T Consensus 34 ~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~l~Plw---~~~g-~~LG~~tal~G~~~~~a~t~avE~~V~~Hy~~Ql~ 109 (172)
T PF03232_consen 34 LRPFLKEMAEEEKDHLAWFEQLLPELRVRPSLLNPLW---YVAG-FALGALTALLGDKAAMACTAAVETVVEEHYNDQLR 109 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcHHHHHH---HHHH-HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554 58999999999963 466543332 2233 33344566899999999999999999999999999
Q ss_pred hhhCCCCCCCCCCHHHHhhhCCCCCCcHHHHHHHhhcCC
Q 041195 157 DLENGSFENAPAPAIAIDYWRLPPDSTLRDVVVVIRADE 195 (195)
Q Consensus 157 ~i~~g~l~~~paP~iA~~Yw~lp~~atl~Dvi~~IRaDE 195 (195)
++.+.. .++|..++++|..+|+||
T Consensus 110 ~L~~~~---------------~~~d~~l~~~i~~~r~DE 133 (172)
T PF03232_consen 110 ELPAMG---------------EEEDPELRAIIEQFRDDE 133 (172)
T ss_pred HHHhcc---------------ccchHHHHHHHHHHHHHH
Confidence 986211 234455999999999998
No 5
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=94.70 E-value=0.092 Score=41.72 Aligned_cols=121 Identities=18% Similarity=0.155 Sum_probs=82.4
Q ss_pred hhhhhhcCCCchHHHHHHHHHHhhccccCcchHH-HHHHHHHHHHHHHHHHHHh----c-CCcHHHHHHHHHHHHHHHHH
Q 041195 51 MLLETVGAVPGMVGGMLLHCKSLRKFEHSGGWIK-ALLEEAENERMHLMTFIEL----A-RPQWYERALVFAVQGVFFNA 124 (195)
Q Consensus 51 ~~LETVA~VPgmv~~~~~HL~slr~m~rd~gwI~-~lleEaeNErmHLl~~~~l----~-~p~~~~R~lv~~~Q~vf~~~ 124 (195)
+++|-++|.-|=..++...++.....+....-++ .+...|.-|.-|...+.++ + +|.+...... .+.++..
T Consensus 17 ~~~~~~~g~~~E~~ai~~Y~y~~~~~~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~~~---~~~~~~~ 93 (154)
T cd07908 17 LLLDDYAGTNSELTAISQYIYQHLISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSD---KFTYWTG 93 (154)
T ss_pred HHHHHhCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhccc---cCCcCCc
Confidence 4678888888888888899998777765334454 5677999999999998886 2 5654332211 1111111
Q ss_pred HHHHHHhChhhHHHhhhhhhhHHHHHHHHHHHhhhCCCCCCCCCCHHHHhhhCCCCCCcHHHHHHHhhcCC
Q 041195 125 YFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPPDSTLRDVVVVIRADE 195 (195)
Q Consensus 125 ~~~~Yl~sPr~ahrfvgylEEeAv~tYt~~l~~i~~g~l~~~paP~iA~~Yw~lp~~atl~Dvi~~IRaDE 195 (195)
-.+....++..+-++.--+|+.|+..|.+.++.+ +|...++++..|.+||
T Consensus 94 ~~~~~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~---------------------~d~~~r~ll~~I~~eE 143 (154)
T cd07908 94 KYVNYGESIKEMLKLDIASEKAAIAKYKRQAETI---------------------KDPYIRALLNRIILDE 143 (154)
T ss_pred cccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHc---------------------CCHHHHHHHHHHHHHH
Confidence 1112334567799999999999999999998864 3456777777777665
No 6
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=94.55 E-value=0.26 Score=41.07 Aligned_cols=93 Identities=27% Similarity=0.342 Sum_probs=67.7
Q ss_pred chHHHHHH-HHHHHHHHHHHHHHh----c-CCcHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhhhhhhhHHHHHHHHH
Q 041195 81 GWIKALLE-EAENERMHLMTFIEL----A-RPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEF 154 (195)
Q Consensus 81 gwI~~lle-EaeNErmHLl~~~~l----~-~p~~~~R~lv~~~Q~vf~~~~~~~Yl~sPr~ahrfvgylEEeAv~tYt~~ 154 (195)
.-++..++ =+..|.-||..|.++ + +|+++.=+. --+. |.+=++.=++.++.++-|+.-+|+....-|..-
T Consensus 29 ~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~PlW---~~~g-f~lG~~tal~G~~~a~~~~~avE~~V~~Hy~~q 104 (165)
T cd01042 29 PAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLPLW---YVAG-FALGALTALLGKKAAMACTAAVETVVEEHYNDQ 104 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHH---HHHH-HHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHH
Confidence 33554444 467899999999885 2 666543222 1223 333344556799999999999999999999999
Q ss_pred HHhhhCCCCCCCCCCHHHHhhhCCCCCCcHHHHHHHhhcCC
Q 041195 155 LKDLENGSFENAPAPAIAIDYWRLPPDSTLRDVVVVIRADE 195 (195)
Q Consensus 155 l~~i~~g~l~~~paP~iA~~Yw~lp~~atl~Dvi~~IRaDE 195 (195)
|++++.- +|..+++.|..+|+||
T Consensus 105 l~~L~~~------------------~d~~l~~~l~~~r~DE 127 (165)
T cd01042 105 LRELPAQ------------------PDKELRAIIEQFRDDE 127 (165)
T ss_pred HHHhhcc------------------CCHHHHHHHHHHHHHH
Confidence 9998521 3678999999999998
No 7
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=91.00 E-value=5 Score=29.62 Aligned_cols=86 Identities=24% Similarity=0.194 Sum_probs=51.7
Q ss_pred hhccccCcchHHH-HHHHHHHHHHHHHHHHHhc-C------CcHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhhhhhh
Q 041195 73 LRKFEHSGGWIKA-LLEEAENERMHLMTFIELA-R------PQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLE 144 (195)
Q Consensus 73 lr~m~rd~gwI~~-lleEaeNErmHLl~~~~l~-~------p~~~~R~lv~~~Q~vf~~~~~~~Yl~sPr~ahrfvgylE 144 (195)
+..+-++. -++. +..-|..|+.|..++.++- + |...............+..-......++..+-+..--.|
T Consensus 20 ~a~~~~~~-~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~E 98 (139)
T cd01045 20 LAEKAKDP-ELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEPEFKKALESLMDPLEALRLAIEIE 98 (139)
T ss_pred HHhHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHHHHHhhhhhHHHHHHhccCHHHHHHHHHHHH
Confidence 33334333 3554 5568899999999888863 2 222111111111111111123456667788889999999
Q ss_pred hHHHHHHHHHHHhhh
Q 041195 145 EEAVNSYTEFLKDLE 159 (195)
Q Consensus 145 EeAv~tYt~~l~~i~ 159 (195)
..|+..|.++++.++
T Consensus 99 ~~~~~~Y~~~~~~~~ 113 (139)
T cd01045 99 KDAIEFYEELAEKAE 113 (139)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999998763
No 8
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=89.30 E-value=3.7 Score=35.55 Aligned_cols=90 Identities=29% Similarity=0.310 Sum_probs=62.3
Q ss_pred HHHHHHH-HHHHHHHHHHHHHh----c-CCcHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhhhhhhhHHHHHHHHHHH
Q 041195 83 IKALLEE-AENERMHLMTFIEL----A-RPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLK 156 (195)
Q Consensus 83 I~~lleE-aeNErmHLl~~~~l----~-~p~~~~R~lv~~~Q~vf~~~~~~~Yl~sPr~ahrfvgylEEeAv~tYt~~l~ 156 (195)
.|.++.| ++.|-.||-.|.+. + .|+++-=+- .++ =|.+=.+.=++++++|.-|++-+|+--.+-|.+-|+
T Consensus 72 ~R~~l~em~d~E~~HL~~f~~~l~e~~vRPsll~P~W-~~~---~FalGA~a~Llgdk~am~~teavE~vIe~Hy~~ql~ 147 (204)
T COG2941 72 PRIQLKEMADEEIDHLAWFEQRLLELGVRPSLLNPLW-YAA---AFALGAGAGLLGDKAAMGFTEAVETVIEKHYDGQLR 147 (204)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHH-HHH---HHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555 45677888888774 3 666543322 111 133444677999999999999999999999999888
Q ss_pred hhhCCCCCCCCCCHHHHhhhCCCCCCcHHHHHHHhhcCC
Q 041195 157 DLENGSFENAPAPAIAIDYWRLPPDSTLRDVVVVIRADE 195 (195)
Q Consensus 157 ~i~~g~l~~~paP~iA~~Yw~lp~~atl~Dvi~~IRaDE 195 (195)
.+.+ .|+.++.-+...|.||
T Consensus 148 ~L~~-------------------~d~~lr~~l~qfR~DE 167 (204)
T COG2941 148 ELPN-------------------LDAELRAILAQFRDDE 167 (204)
T ss_pred HHhh-------------------ccHHHHHHHHHHhhHH
Confidence 8852 2336777888888876
No 9
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=83.47 E-value=4 Score=33.39 Aligned_cols=115 Identities=22% Similarity=0.209 Sum_probs=73.6
Q ss_pred hhhhhhcCCCchHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 041195 51 MLLETVGAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYL 130 (195)
Q Consensus 51 ~~LETVA~VPgmv~~~~~HL~slr~m~rd~gwI~~lleEaeNErmHLl~~~~l~~p~~~~R~lv~~~Q~vf~~~~~~~Yl 130 (195)
.++|-++|.-|=..++++-++.-..++.+...-..+++.|..|..|+-++.++-.. +---..+..| ...|+
T Consensus 24 ~l~~~~gG~~gEl~ai~qYl~q~~~~~~~~~~~d~l~~ia~eEm~H~e~la~~I~~------Lg~~~~g~pw---~~~yv 94 (156)
T cd01051 24 LLQEQLGGAFGELSAAMQYLFQSFNFREDPKYRDLLLDIGTEELSHLEMVATLIAM------LLKDSQGVPW---TAAYI 94 (156)
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HcCCCCCCcC---CCccc
Confidence 57888888888777777888877777433343456788999999999888775100 0000111111 23332
Q ss_pred hC---hhhHHHhhhhhhhHHHHHHHHHHHhhhCCCCCCCCCCHHHHhhhCCCCCCcHHHHHHHhhcCC
Q 041195 131 AS---PKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPPDSTLRDVVVVIRADE 195 (195)
Q Consensus 131 ~s---Pr~ahrfvgylEEeAv~tYt~~l~~i~~g~l~~~paP~iA~~Yw~lp~~atl~Dvi~~IRaDE 195 (195)
-+ +...-+-+=-.|+.|+.+|.+.++.+ +|-+++|++..|+.||
T Consensus 95 ~~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~---------------------~Dp~v~~~l~~I~~rE 141 (156)
T cd01051 95 QSSGNLVADLRSNIAAESRARLTYERLYEMT---------------------DDPGVKDTLSFLLVRE 141 (156)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc---------------------CCHHHHHHHHHHHHHH
Confidence 22 22222333345889999999999887 3557888888888886
No 10
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=82.83 E-value=16 Score=27.99 Aligned_cols=77 Identities=26% Similarity=0.399 Sum_probs=49.8
Q ss_pred hhccccCcchHHHHHHHHHHHHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhhhhhhhHH
Q 041195 73 LRKFEHSGGWIKALLEEAENERMHLMTFIELA-----RPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEA 147 (195)
Q Consensus 73 lr~m~rd~gwI~~lleEaeNErmHLl~~~~l~-----~p~~~~R~lv~~~Q~vf~~~~~~~Yl~sPr~ahrfvgylEEeA 147 (195)
+-....|..-=+.+..-|+.|+.|..+|.++. .|. ... ....++- ++.=+++|..+.++..-.|+.|
T Consensus 20 la~~~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~-~~~-----~~~~~~~--~l~~~~g~~~~l~~~~~~E~~a 91 (125)
T cd01044 20 LAKREKDPENREILLKLAEDERRHAEFWKKFLGKRGVPPP-RPK-----LKIFFYK--LLARIFGPTFVLKLLERGEERA 91 (125)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-Ccc-----HHHHHHH--HHHHHHhHHHHHHHHHHhHHhh
Confidence 44444443433445668999999999999873 221 011 1111111 1233567888999999999999
Q ss_pred HHHHHHHHHh
Q 041195 148 VNSYTEFLKD 157 (195)
Q Consensus 148 v~tYt~~l~~ 157 (195)
+..|++..+.
T Consensus 92 i~~Y~~~~~~ 101 (125)
T cd01044 92 IEKYDRLLEE 101 (125)
T ss_pred HhhHHhhhhh
Confidence 9999998875
No 11
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=67.21 E-value=39 Score=23.37 Aligned_cols=89 Identities=27% Similarity=0.297 Sum_probs=54.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHh----c-CCcHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhhhhhhhHHHHHHHH
Q 041195 79 SGGWIKALLEEAENERMHLMTFIEL----A-RPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTE 153 (195)
Q Consensus 79 d~gwI~~lleEaeNErmHLl~~~~l----~-~p~~~~R~lv~~~Q~vf~~~~~~~Yl~sPr~ahrfvgylEEeAv~tYt~ 153 (195)
+.+..+.+...+..|+.|...+.++ + +|....... ..+.-...-..+|..+-...--.|..+...|..
T Consensus 26 ~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~E~~~~~~y~~ 98 (130)
T cd00657 26 DPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAHL-------LAAYALPKTSDDPAEALRAALEVEARAIAAYRE 98 (130)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHH-------HHhcccCCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 5565666778899999999998886 2 444322220 001111122344556666666678888888888
Q ss_pred HHHhhhCCCCCCCCCCHHHHhhhCCCCCCcHHHHHHHhhcCC
Q 041195 154 FLKDLENGSFENAPAPAIAIDYWRLPPDSTLRDVVVVIRADE 195 (195)
Q Consensus 154 ~l~~i~~g~l~~~paP~iA~~Yw~lp~~atl~Dvi~~IRaDE 195 (195)
+++..+ +..++|++..+..||
T Consensus 99 ~~~~~~---------------------d~~~~~~~~~~~~~E 119 (130)
T cd00657 99 LIEQAD---------------------DPELRRLLERILADE 119 (130)
T ss_pred HHHhcC---------------------ChHHHHHHHHHHHHH
Confidence 776642 445777777777765
No 12
>PF13413 HTH_25: Helix-turn-helix domain; PDB: 2WUS_R 3FYM_A.
Probab=55.12 E-value=10 Score=26.43 Aligned_cols=25 Identities=36% Similarity=0.797 Sum_probs=21.5
Q ss_pred HHHHHhhhCCCCCCCCCCHHHHhhh
Q 041195 152 TEFLKDLENGSFENAPAPAIAIDYW 176 (195)
Q Consensus 152 t~~l~~i~~g~l~~~paP~iA~~Yw 176 (195)
..+|+.||+|.+..+|.|..+++|-
T Consensus 24 ~~~l~aiE~~~~~~lp~~~y~rg~l 48 (62)
T PF13413_consen 24 VSYLEAIENGDFDSLPSPVYARGYL 48 (62)
T ss_dssp HHHHHHHHCT-GCCSSSHHHHHHHH
T ss_pred HHHHHHHHCcChhhCCcHHHHHHHH
Confidence 4689999999999999999999885
No 13
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=27.97 E-value=19 Score=25.65 Aligned_cols=19 Identities=42% Similarity=0.658 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhhhCCCCCC
Q 041195 147 AVNSYTEFLKDLENGSFEN 165 (195)
Q Consensus 147 Av~tYt~~l~~i~~g~l~~ 165 (195)
--.+|++|++++++|++++
T Consensus 28 ~~i~YS~F~~~l~~g~V~~ 46 (110)
T PF06480_consen 28 KEISYSEFLQMLEKGNVKK 46 (110)
T ss_dssp EE--HHHHHHTGGGT-EEE
T ss_pred cEECHHHHHHHHHcCCEEE
Confidence 4568999999999999853
No 14
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=26.69 E-value=3.7e+02 Score=29.47 Aligned_cols=101 Identities=19% Similarity=0.176 Sum_probs=65.2
Q ss_pred ccccchhhhhhhhcCCCchHHHHH------------HHHHHhhccccCcch------HHHHHHHHHHHHHHH--HHHHHh
Q 041195 44 RRHMCHAMLLETVGAVPGMVGGML------------LHCKSLRKFEHSGGW------IKALLEEAENERMHL--MTFIEL 103 (195)
Q Consensus 44 ~r~~~R~~~LETVA~VPgmv~~~~------------~HL~slr~m~rd~gw------I~~lleEaeNErmHL--l~~~~l 103 (195)
..+.+|+..|||+|.|- ++-.|. +-+.++-+-....+| +.+++.|.+|-.-|+ ++|.++
T Consensus 112 p~f~r~~~lletl~~~k-~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d~v~~e~L~~ll~~l 190 (1266)
T KOG1525|consen 112 PYFKRYFYLLETLAKVK-FCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEEDTVQSELLDVLLENL 190 (1266)
T ss_pred cchhhHHHHHHHHHHhH-HHheeeccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchHHHHHHHHHHh
Confidence 34678999999999998 774432 233444433333344 567888999988888 466667
Q ss_pred cCCc----------------------------HHHHHHHHH------HHHHHHHHHHHHHHhChhhHHHhhhhhhh
Q 041195 104 ARPQ----------------------------WYERALVFA------VQGVFFNAYFLAYLASPKLAHRIVGYLEE 145 (195)
Q Consensus 104 ~~p~----------------------------~~~R~lv~~------~Q~vf~~~~~~~Yl~sPr~ahrfvgylEE 145 (195)
.+|. ++-|-+..- .+.-|+.+.+=+|.++|.+--...++||-
T Consensus 191 v~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~ 266 (1266)
T KOG1525|consen 191 VKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEF 266 (1266)
T ss_pred ccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5441 111111111 23346677777888999999999999874
No 15
>COG1614 CdhC CO dehydrogenase/acetyl-CoA synthase beta subunit [Energy production and conversion]
Probab=25.26 E-value=9.4 Score=36.13 Aligned_cols=26 Identities=35% Similarity=0.689 Sum_probs=24.1
Q ss_pred CCchHHHHHHHHHHhhccccCcchHH
Q 041195 59 VPGMVGGMLLHCKSLRKFEHSGGWIK 84 (195)
Q Consensus 59 VPgmv~~~~~HL~slr~m~rd~gwI~ 84 (195)
||||++.++.-++|=.-++-|+||=|
T Consensus 325 v~GF~Gisi~Ym~SpKFlQ~DGGw~R 350 (470)
T COG1614 325 VPGFVGISISYMRSPKFLQADGGWER 350 (470)
T ss_pred ccceeeeeeeeecCccceecCCCeeE
Confidence 79999999999999999999999943
No 16
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=25.23 E-value=38 Score=31.19 Aligned_cols=17 Identities=35% Similarity=0.624 Sum_probs=14.8
Q ss_pred hhhhhcCCCchHHHHHH
Q 041195 52 LLETVGAVPGMVGGMLL 68 (195)
Q Consensus 52 ~LETVA~VPgmv~~~~~ 68 (195)
=||..+++||.|||.+.
T Consensus 108 GlE~l~gIPGTVGGAv~ 124 (334)
T PRK00046 108 GLENLALIPGTVGAAPI 124 (334)
T ss_pred hhHHhcCCCcchhHHHH
Confidence 38999999999998764
No 17
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=25.20 E-value=74 Score=28.14 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=35.2
Q ss_pred ChhhHHHhhhhhh------hHHHHHHHHHHHhhh-------------CCCCCCCCCCHHHHhhhCCCCCC
Q 041195 132 SPKLAHRIVGYLE------EEAVNSYTEFLKDLE-------------NGSFENAPAPAIAIDYWRLPPDS 182 (195)
Q Consensus 132 sPr~ahrfvgylE------EeAv~tYt~~l~~i~-------------~g~l~~~paP~iA~~Yw~lp~~a 182 (195)
-|..||+++.||| ++|++.|-.--+++. .|+--...-|+.|+.|+...=++
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~ 102 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA 102 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc
Confidence 3899999999999 588887765444432 24444556788888888544333
No 18
>PRK13456 DNA protection protein DPS; Provisional
Probab=23.59 E-value=81 Score=27.04 Aligned_cols=116 Identities=22% Similarity=0.266 Sum_probs=64.1
Q ss_pred cchhhhhhhhcCCCchHHHHHHHHHHhhccccCcchHHHHHHHHH-HHHHHHHHHHH----hc-CCcH-HHHHHHHHHHH
Q 041195 47 MCHAMLLETVGAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAE-NERMHLMTFIE----LA-RPQW-YERALVFAVQG 119 (195)
Q Consensus 47 ~~R~~~LETVA~VPgmv~~~~~HL~slr~m~rd~gwI~~lleEae-NErmHLl~~~~----l~-~p~~-~~R~lv~~~Q~ 119 (195)
++.++-=|-+|-.=|. +|-....|+.++. |+..|+++- .|+-|-..+.+ || .|.. ...|.-+..+.
T Consensus 25 Ln~AlA~E~~a~~~Y~-----~~a~~~~G~~~e~--V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~~ls~~~ 97 (186)
T PRK13456 25 LVKNAAAEFTTYYYYT-----ILRAHLIGLEGEG--LKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFHDISACP 97 (186)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHhCcCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHhhhhcCc
Confidence 3455555666544443 4445566776543 666666665 89999876654 44 5543 22233333331
Q ss_pred HHHHHHHHHHHhC-hhhHHHhhhhh---hhHHHHHHHHHHHhhhCCCCCCCCCCHHHHhhhCCCCCCcHHHHHHHhhcCC
Q 041195 120 VFFNAYFLAYLAS-PKLAHRIVGYL---EEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPPDSTLRDVVVVIRADE 195 (195)
Q Consensus 120 vf~~~~~~~Yl~s-Pr~ahrfvgyl---EEeAv~tYt~~l~~i~~g~l~~~paP~iA~~Yw~lp~~atl~Dvi~~IRaDE 195 (195)
| +++-. |...-.++.-. |..|+.+|++.++... | .|-+=+|+++.|-+||
T Consensus 98 -~------~~~p~d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~-~------------------kDp~T~~l~~~IL~dE 151 (186)
T PRK13456 98 -D------AYLPENPTDPKEILKVLLEAERCAIRTYTEICDMTA-G------------------KDPRTYDLALAILQEE 151 (186)
T ss_pred -c------ccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-c------------------CCccHHHHHHHHHHHH
Confidence 1 11211 22233333322 7799999999999985 3 2334566666666665
No 19
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=23.04 E-value=2.2e+02 Score=20.64 Aligned_cols=88 Identities=17% Similarity=0.260 Sum_probs=41.8
Q ss_pred HHHHHHHH---HHHHHHHHHHHHh----c-CCc---HHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhhh---hhhhHHH
Q 041195 83 IKALLEEA---ENERMHLMTFIEL----A-RPQ---WYERALVFAVQGVFFNAYFLAYLASPKLAHRIVG---YLEEEAV 148 (195)
Q Consensus 83 I~~lleEa---eNErmHLl~~~~l----~-~p~---~~~R~lv~~~Q~vf~~~~~~~Yl~sPr~ahrfvg---ylEEeAv 148 (195)
.+.+.||. ..++.|--+|.++ + ++. ..+....-.. ...|.+. ....+++.....+| ..|--..
T Consensus 2 ~~nl~dE~G~G~~~~~H~~Lf~~~L~~~Gi~~~~~~~~~~~~~~~~--~~~n~~~-~~~~~~~~~~~~lG~~~~~E~~~~ 78 (106)
T PF14518_consen 2 AENLWDEMGNGDPERSHPELFRRFLRALGIDDEPGAYRDPYPPETL--ALINLFL-ALCLHRSHYPEALGALLATESSVP 78 (106)
T ss_dssp HHHHHHHTTTT-GGG-HHHHHHHHHHHTT-----TT-----HHHHH--HHHHHHH-HH--H-SSTHHHHHHHHHHHTHHH
T ss_pred HHHHHHHhCCCCccccHHHHHHHHHHHcCCCCccccccccCCHHHH--HHHHHHH-HhcccchhHHHHHHHHHHHhhcCh
Confidence 35677777 4478899888775 2 221 2222322111 2223222 22334444445444 4577777
Q ss_pred HHHHHHHHhhhCCCCCCCCCCHHHHhhhCC
Q 041195 149 NSYTEFLKDLENGSFENAPAPAIAIDYWRL 178 (195)
Q Consensus 149 ~tYt~~l~~i~~g~l~~~paP~iA~~Yw~l 178 (195)
..|..+++.+.. ...|+-+..||.+
T Consensus 79 ~~~~~~~~~l~r-----~g~~~~~~~yf~~ 103 (106)
T PF14518_consen 79 QIYRRLIKGLRR-----LGLDEEDLEYFDL 103 (106)
T ss_dssp HHHHHHHHHHHH-----TT--TTTTHHHHT
T ss_pred HHHHHHHHHHHH-----cCCCccccchhhh
Confidence 888888887752 2255556777754
No 20
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=21.99 E-value=67 Score=26.05 Aligned_cols=58 Identities=17% Similarity=0.075 Sum_probs=35.1
Q ss_pred CCCCcchHHHHHHHHH-hhhhhhhhccc--cccch----hhhhhhhcCC----CchHHH---HHHHHHHhhc
Q 041195 18 KPENYRDKFAYWTVQA-LKFPTHLFFQR--RHMCH----AMLLETVGAV----PGMVGG---MLLHCKSLRK 75 (195)
Q Consensus 18 ~P~~~~D~~A~~~vk~-lr~~~D~~~~~--r~~~R----~~~LETVA~V----Pgmv~~---~~~HL~slr~ 75 (195)
.|-.-.|+-....-|. |-.++|-+-++ +|.+- +--.|+|||. ||...+ |=+|+|+||.
T Consensus 65 ~~ls~~~~~e~q~kK~KLl~mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqamSrhFR~LRd 136 (140)
T PF07526_consen 65 PELSPAERQELQRKKAKLLSMLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQAMSRHFRCLRD 136 (140)
T ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHH
Confidence 3334456666666554 44555666532 23321 2347889877 777654 7799999985
No 21
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=21.90 E-value=43 Score=31.28 Aligned_cols=16 Identities=50% Similarity=0.843 Sum_probs=14.2
Q ss_pred hhhhcCCCchHHHHHH
Q 041195 53 LETVGAVPGMVGGMLL 68 (195)
Q Consensus 53 LETVA~VPgmv~~~~~ 68 (195)
||..|++||.|||.+.
T Consensus 120 lE~laGIPGTVGGAv~ 135 (354)
T PRK14648 120 LETFAGLPGSVGGAAY 135 (354)
T ss_pred hhhhcCCCcchhhHhh
Confidence 8999999999998663
No 22
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=21.36 E-value=55 Score=25.24 Aligned_cols=20 Identities=25% Similarity=0.498 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHhhhCCCCC
Q 041195 145 EEAVNSYTEFLKDLENGSFE 164 (195)
Q Consensus 145 EeAv~tYt~~l~~i~~g~l~ 164 (195)
.|+|+.|..++++..+|+|+
T Consensus 60 ~epIDVY~~wiD~~~eg~i~ 79 (99)
T PRK14892 60 YDEVDVYNKFIDLYLEGKIE 79 (99)
T ss_pred ccchhhHHHHHHHHHhcCCC
Confidence 47999999999999999995
No 23
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.
Probab=21.33 E-value=54 Score=27.67 Aligned_cols=48 Identities=17% Similarity=0.362 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHhhhCC--CCCCCCCCHHHHhhhCCCCCCcHHHHHHHhh
Q 041195 145 EEAVNSYTEFLKDLENG--SFENAPAPAIAIDYWRLPPDSTLRDVVVVIR 192 (195)
Q Consensus 145 EeAv~tYt~~l~~i~~g--~l~~~paP~iA~~Yw~lp~~atl~Dvi~~IR 192 (195)
+.....|...|+..++. .++++.-|.++.+++++|.+..-+-++.+|+
T Consensus 134 ~~l~~a~~~~L~~a~~~~~~i~sIa~P~igTGvgg~p~~~aA~~m~~ai~ 183 (186)
T cd02900 134 EPVFDAMWNALNAIPKENQEINTLVLPGLGTGYGGVPPEIAAKQMAFAIR 183 (186)
T ss_pred HHHHHHHHHHHHHHHhccCCCCEEEECchhcCCCCCCHHHHHHHHHHHHH
Confidence 55778888889888765 6899999999999999998876666666665
No 24
>PLN02975 complex I subunit
Probab=20.50 E-value=82 Score=24.41 Aligned_cols=40 Identities=20% Similarity=0.377 Sum_probs=25.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhhhhhhhHH
Q 041195 105 RPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEA 147 (195)
Q Consensus 105 ~p~~~~R~lv~~~Q~vf~~~~~~~Yl~sPr~ahrfvgylEEeA 147 (195)
+|+.+-..+.+..-..++--|...| -+.|.||.|+-|.+.
T Consensus 51 ~~~~~~~~mr~ag~iG~~gGf~~aY---q~S~~Rf~G~~EN~r 90 (97)
T PLN02975 51 KPGIRGPSMVTGGLIGLMGGFMYAY---QNSAGRLMGFFPNEG 90 (97)
T ss_pred CccccchHHHHHHHHHHhhhHHhhh---cccchhhcCCCCCHH
Confidence 5666555555444444544444444 588999999998643
Done!