Query 041195
Match_columns 195
No_of_seqs 115 out of 349
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 07:31:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v8t_A Manganese-containing ps 27.9 15 0.0005 32.4 0.4 53 51-103 25-80 (302)
2 1o9i_A Pseudocatalase; oxidore 18.8 39 0.0013 29.1 1.3 51 51-103 24-76 (266)
3 3k6c_A Uncharacterized protein 17.3 57 0.002 24.1 1.7 31 144-195 30-60 (95)
4 3c5t_B Exendin-4, exenatide; l 17.0 79 0.0027 18.9 2.0 22 139-163 2-23 (31)
5 1lko_A Rubrerythrin all-iron(I 16.6 72 0.0025 25.4 2.3 111 47-163 13-147 (191)
6 2b7e_A PRE-mRNA processing pro 15.5 2.1E+02 0.0072 19.2 4.1 14 145-158 3-16 (59)
7 4am5_A Bacterioferritin; metal 14.6 85 0.0029 23.5 2.2 52 46-103 10-61 (159)
8 2hz8_A De novo designed DIIRON 14.3 59 0.002 24.8 1.2 52 144-195 11-74 (115)
9 1oao_C CODH, carbon monoxide d 12.9 35 0.0012 33.4 -0.6 49 59-112 641-699 (729)
10 2lep_A Rhomboid protease GLPG 16.5 45 0.0015 22.6 0.0 19 131-149 8-26 (69)
No 1
>2v8t_A Manganese-containing pseudocatalase; manganese catalase, oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A 2cwl_A
Probab=27.93 E-value=15 Score=32.37 Aligned_cols=53 Identities=11% Similarity=0.043 Sum_probs=37.4
Q ss_pred hhhhhhcCCCchHHHHHHHHHHhhccccCcc--hHHHHHHHH-HHHHHHHHHHHHh
Q 041195 51 MLLETVGAVPGMVGGMLLHCKSLRKFEHSGG--WIKALLEEA-ENERMHLMTFIEL 103 (195)
Q Consensus 51 ~~LETVA~VPgmv~~~~~HL~slr~m~rd~g--wI~~lleEa-eNErmHLl~~~~l 103 (195)
.++|-++|.=|=..++++-|.---.++.++. -++.||... --|..|+-++-++
T Consensus 25 ~L~eq~GG~~GElsAamqYl~Qs~~~~~~~~~~~~~dLL~dIatEEL~HlEmvat~ 80 (302)
T 2v8t_A 25 AVQALLGGRFGEMSTLMNYMYQSFNFRGKKALKPYYDLIANIATEELGHIELVAAT 80 (302)
T ss_dssp HHTHHHHSTTSHHHHHHHHHHHHHHCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCccHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHhccHHHHHHHH
Confidence 5788888888866777788887777775532 466666544 8888998666553
No 2
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase, metalloenzyme, preoxidase; HET: MES; 1.33A {Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A 1jku_A
Probab=18.82 E-value=39 Score=29.07 Aligned_cols=51 Identities=22% Similarity=0.156 Sum_probs=36.1
Q ss_pred hhhhhhcCCCchHHHHHHHHHHhhccccCcchH-HHHHH-HHHHHHHHHHHHHHh
Q 041195 51 MLLETVGAVPGMVGGMLLHCKSLRKFEHSGGWI-KALLE-EAENERMHLMTFIEL 103 (195)
Q Consensus 51 ~~LETVA~VPgmv~~~~~HL~slr~m~rd~gwI-~~lle-EaeNErmHLl~~~~l 103 (195)
.++|-++|.=|=..++++-|.---.++.+ -+ +.||. =+--|..|+-++-++
T Consensus 24 ~L~e~~GG~~GElsAamqYl~Q~~~~~~~--~~y~dLL~dIatEEl~HlEmva~~ 76 (266)
T 1o9i_A 24 RLQESLGGQWGETTGMMSFLSQGWASTGA--EKYKDLLLDTGTEEMAHVEMISTM 76 (266)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHCCSC--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCccHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHhccHHHHHHHH
Confidence 57888888888667777888777777653 35 55554 458888998766653
No 3
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea}
Probab=17.26 E-value=57 Score=24.10 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHhhhCCCCCCCCCCHHHHhhhCCCCCCcHHHHHHHhhcCC
Q 041195 144 EEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPPDSTLRDVVVVIRADE 195 (195)
Q Consensus 144 EEeAv~tYt~~l~~i~~g~l~~~paP~iA~~Yw~lp~~atl~Dvi~~IRaDE 195 (195)
|-||+.-|.+.++..+ |.-++.|+.-||.||
T Consensus 30 EleAI~~Y~q~a~~~~---------------------d~~~k~vl~~i~~EE 60 (95)
T 3k6c_A 30 ELEAVDLYNQRVNACK---------------------DKELKAILAHNRDEE 60 (95)
T ss_dssp HHHHHHHHHHHHHHCC---------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---------------------CHHHHHHHHHHHHHH
Confidence 4578888888877763 445677777777665
No 4
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=17.02 E-value=79 Score=18.87 Aligned_cols=22 Identities=41% Similarity=0.515 Sum_probs=15.8
Q ss_pred hhhhhhhHHHHHHHHHHHhhhCCCC
Q 041195 139 IVGYLEEEAVNSYTEFLKDLENGSF 163 (195)
Q Consensus 139 fvgylEEeAv~tYt~~l~~i~~g~l 163 (195)
+.-|||+.|.+ .||+=+-+|+-
T Consensus 2 ~SkyLe~~aak---dFv~WL~ngk~ 23 (31)
T 3c5t_B 2 LSKQMEEEAVR---LFIEWLKNGGP 23 (31)
T ss_dssp HHHHHHHHHHH---HHHHHHHTTGG
T ss_pred HHHHHHHHHHH---HHHHHHHhCCC
Confidence 45799999998 56666656664
No 5
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=16.62 E-value=72 Score=25.37 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=62.6
Q ss_pred cchhhhhhhhcCCCchHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHHHHHhc---C-------C----cHHHHH
Q 041195 47 MCHAMLLETVGAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELA---R-------P----QWYERA 112 (195)
Q Consensus 47 ~~R~~~LETVA~VPgmv~~~~~HL~slr~m~rd~gwI~~lleEaeNErmHLl~~~~l~---~-------p----~~~~R~ 112 (195)
++..+-.|+-|+.=|+..+....= +.-.|.=+-+.++|.+|+.|-+.+.+.- + | +=..-.
T Consensus 13 Ln~a~~~E~~A~~~Yl~~A~~a~~------~G~~~iA~~f~~~A~eE~~HA~~~~~~l~gg~~~i~~~~p~~~~~s~~e~ 86 (191)
T 1lko_A 13 ILTAFAGESQARNRYNYFGGQAKK------DGFVQISDIFAETADQEREHAKRLFKFLEGGDLEIVAAFPAGIIADTHAN 86 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCCCCCCCCCCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------CCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccCcCCccccCCHHHH
Confidence 456677788887777776664211 1112333456789999999999998853 2 1 112223
Q ss_pred HHHHHHHH-H-----HHHHH-HHHHh-ChhhHHHhhhhhhhHHH--HHHHHHHHhhhCCCC
Q 041195 113 LVFAVQGV-F-----FNAYF-LAYLA-SPKLAHRIVGYLEEEAV--NSYTEFLKDLENGSF 163 (195)
Q Consensus 113 lv~~~Q~v-f-----~~~~~-~~Yl~-sPr~ahrfvgylEEeAv--~tYt~~l~~i~~g~l 163 (195)
+-..+++= + |+-+. .+--- .+.++--|-.++++|.. ..|...|+.+++|+.
T Consensus 87 l~~al~~E~~e~t~~y~~~~~~A~eegd~~~~~~f~~~~~~E~ehe~~~~~~l~~l~~~~~ 147 (191)
T 1lko_A 87 LIASAAGEHHEYTEMYPSFARIAREEGYEEIARVFASIAVAEEFHEKRFLDFARNIKEGRV 147 (191)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 33333332 1 22111 22111 24555556566655444 469999999998874
No 6
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=15.49 E-value=2.1e+02 Score=19.16 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHhh
Q 041195 145 EEAVNSYTEFLKDL 158 (195)
Q Consensus 145 EeAv~tYt~~l~~i 158 (195)
|||...+.++|++.
T Consensus 3 eEae~aF~~lL~~~ 16 (59)
T 2b7e_A 3 MEAEKEFITMLKEN 16 (59)
T ss_dssp THHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHc
Confidence 67888888898887
No 7
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*
Probab=14.65 E-value=85 Score=23.52 Aligned_cols=52 Identities=15% Similarity=0.006 Sum_probs=34.7
Q ss_pred ccchhhhhhhhcCCCchHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHHHHHh
Q 041195 46 HMCHAMLLETVGAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIEL 103 (195)
Q Consensus 46 ~~~R~~~LETVA~VPgmv~~~~~HL~slr~m~rd~gwI~~lleEaeNErmHLl~~~~l 103 (195)
.+++.+-.|..|..=|+..+.+. . -+.-.|.-+.+.++|.+|+.|...+.+.
T Consensus 10 ~LN~~l~~El~A~~~Y~~~a~~~--~----~~g~~~~a~~f~~~a~eE~~HA~~l~~~ 61 (159)
T 4am5_A 10 YLNRGLRSELTAVSQYWLHYRML--E----DWGYKDLAKKWRAESIEEMAHADKFVER 61 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--H----HHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--h----cCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888877777655432 1 1112244456788999999999988873
No 8
>2hz8_A De novo designed DIIRON protein; four-helix bundle, de novo protein; NMR {Escherichia coli} PDB: 2lfd_A 2lff_A
Probab=14.28 E-value=59 Score=24.77 Aligned_cols=52 Identities=29% Similarity=0.414 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHhhhCCC-------C-CCCCCCHHHHhhh----CCCCCCcHHHHHHHhhcCC
Q 041195 144 EEEAVNSYTEFLKDLENGS-------F-ENAPAPAIAIDYW----RLPPDSTLRDVVVVIRADE 195 (195)
Q Consensus 144 EEeAv~tYt~~l~~i~~g~-------l-~~~paP~iA~~Yw----~lp~~atl~Dvi~~IRaDE 195 (195)
|..|++.|.+.++....+. + ..+.|=--|+.+| ++-++..-+++|.-||.||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~el~~lIr~~ikaE~~AI~~Y~qLA~~AP~ee~k~iI~eIr~DE 74 (115)
T 2hz8_A 11 EQQAIKIYKEVLKKAKEGDEQELARLIQEIVKAEKQAVKVYKEAAEKARNPEKRQVIDKILEDE 74 (115)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHTTTHHHHHHHHHHHHHHHHHHHHSCCCTTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4566677766666554111 1 0123344566666 4566777889999999886
No 9
>1oao_C CODH, carbon monoxide dehydrogenase/acetyl-COA synthase alpha; oxidoreductase-transferase complex, electron transfer, oxidoreductase; 1.90A {Moorella thermoacetica} SCOP: e.26.1.3 PDB: 2z8y_M 3i01_M 3i04_M 1mjg_M 1ru3_A 3git_A 3s2x_A
Probab=12.93 E-value=35 Score=33.42 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=37.6
Q ss_pred CCchHHHHHHHHHHhhccccCcch---------HHHHHHHHHHHHHHHHHHHHhc-CCcHHHHH
Q 041195 59 VPGMVGGMLLHCKSLRKFEHSGGW---------IKALLEEAENERMHLMTFIELA-RPQWYERA 112 (195)
Q Consensus 59 VPgmv~~~~~HL~slr~m~rd~gw---------I~~lleEaeNErmHLl~~~~l~-~p~~~~R~ 112 (195)
+|||+|.+..-++|=.-++-|+|| +|.-+.+.-|+|.-- ++ -+.+.|++
T Consensus 641 ~pGF~G~~~~y~~S~KFl~adGG~~RiVWmPk~lKe~v~~~i~~~~~e-----~g~~~~~~dkI 699 (729)
T 1oao_C 641 TPGFMGIGRTYIVSKKFISADGGIARIVWMPKSLKDFLHDEFVRRSVE-----EGLGEDFIDKI 699 (729)
T ss_dssp CTTEEEECGGGGGSTTTTGGGTGGGGEEECCHHHHHHHHHHHHHHHHH-----TTSCTTHHHHS
T ss_pred CCCccccchhhccCccceecCCCeeeEEECCHHHHHHHHHHHHHhHhh-----hCCchHHHhhc
Confidence 699999999999999999999999 566666777766543 35 56666654
No 10
>2lep_A Rhomboid protease GLPG 1; cell membrane, cytosol, membrane protein, micelles, serine P domain swapping, hydrolase; NMR {Escherichia coli}
Probab=16.52 E-value=45 Score=22.55 Aligned_cols=19 Identities=32% Similarity=0.635 Sum_probs=16.0
Q ss_pred hChhhHHHhhhhhhhHHHH
Q 041195 131 ASPKLAHRIVGYLEEEAVN 149 (195)
Q Consensus 131 ~sPr~ahrfvgylEEeAv~ 149 (195)
=+|+.|+.|++||+..-+.
T Consensus 8 ~N~~~Aq~f~dyL~s~gI~ 26 (69)
T 2lep_A 8 ANPRVAQAFVDYMATQGVI 26 (69)
Confidence 3699999999999977653
Done!