Query 041195
Match_columns 195
No_of_seqs 115 out of 349
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 07:31:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041195.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041195hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jkva_ a.25.1.3 (A:) Manganes 50.1 1.3 9.6E-05 36.3 -0.5 123 51-195 24-178 (266)
2 d2doda1 a.159.2.1 (A:651-719) 33.0 30 0.0022 21.9 4.4 33 144-194 9-41 (69)
3 d2ib0a1 a.25.1.9 (A:17-158) Hy 29.5 17 0.0012 25.2 2.9 28 132-159 79-106 (142)
4 d2cwla1 a.25.1.3 (A:1-299) Man 29.2 15 0.0011 30.2 2.8 124 51-195 25-185 (299)
5 d2fzfa1 a.25.1.1 (A:10-167) Hy 22.8 22 0.0016 24.0 2.3 25 134-158 98-122 (158)
6 d1uzca_ a.159.2.1 (A:) Hypa/FB 19.6 68 0.005 20.0 4.2 33 144-194 12-44 (69)
7 d1uxya1 d.145.1.2 (A:3-200) Ur 18.1 9.9 0.00072 28.7 -0.5 16 52-67 101-116 (198)
8 d2py8a1 a.280.1.1 (A:2-121) Ru 16.0 94 0.0068 22.0 4.6 44 30-89 18-62 (120)
9 d1vjxa_ a.25.1.1 (A:) Hypothet 15.2 51 0.0037 22.0 2.9 76 83-158 36-118 (149)
10 d1hska1 d.145.1.2 (A:15-208) U 14.1 36 0.0026 25.1 1.8 19 50-68 117-135 (194)
No 1
>d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase) {Lactobacillus plantarum [TaxId: 1590]}
Probab=50.14 E-value=1.3 Score=36.32 Aligned_cols=123 Identities=20% Similarity=0.187 Sum_probs=76.0
Q ss_pred hhhhhhcCCCchHHHHHHHHHHhhccccCcchHH-HHHHHHHHHHHHHHHHHHhc-----CCcH------HHHHHHHHHH
Q 041195 51 MLLETVGAVPGMVGGMLLHCKSLRKFEHSGGWIK-ALLEEAENERMHLMTFIELA-----RPQW------YERALVFAVQ 118 (195)
Q Consensus 51 ~~LETVA~VPgmv~~~~~HL~slr~m~rd~gwI~-~lleEaeNErmHLl~~~~l~-----~p~~------~~R~lv~~~Q 118 (195)
.++|-++|.=|=-.++++-|+---.++ +.+.++ .|++=|--|..|+-++-.+- ..+. .+-.+....+
T Consensus 24 ~L~e~~GG~~GElsa~~qYl~Q~~~~~-~~~~~~dll~dIatEEl~HlEmvat~I~~Ll~~~~~~~~~~~~~~~~~~~~~ 102 (266)
T d1jkva_ 24 RLQESLGGQWGETTGMMSYLSQGWAST-GAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMA 102 (266)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHCTTHHHHHH
T ss_pred HHHHHhCCCchHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhcccchhHHHHhc
Confidence 578888998887777778887765554 445665 56778999999997765531 1110 0001111111
Q ss_pred H---HHHHH--------------HHHHHHhC---hhhHHHhhhhhhhHHHHHHHHHHHhhhCCCCCCCCCCHHHHhhhCC
Q 041195 119 G---VFFNA--------------YFLAYLAS---PKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRL 178 (195)
Q Consensus 119 ~---vf~~~--------------~~~~Yl~s---Pr~ahrfvgylEEeAv~tYt~~l~~i~~g~l~~~paP~iA~~Yw~l 178 (195)
| -++.. +...|+.+ +...-|..=..|..|..+|.+.++.+|
T Consensus 103 G~~p~~~~~~g~g~~~~ds~G~pWt~~Yv~~~Gnl~~DL~~NiaAE~~Ar~~Y~rl~~~td------------------- 163 (266)
T d1jkva_ 103 GMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTE------------------- 163 (266)
T ss_dssp HSCHHHHHTTSSCCCSBCTTCCBCBGGGCCCCSCHHHHHHHHHHHHHHHHHHHHHHHTTCC-------------------
T ss_pred CCCcceeeeccCcccccCCCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------------
Confidence 1 01111 12233333 566677777789999999999887774
Q ss_pred CCCCcHHHHHHHhhcCC
Q 041195 179 PPDSTLRDVVVVIRADE 195 (195)
Q Consensus 179 p~~atl~Dvi~~IRaDE 195 (195)
|-..+|++.-|++||
T Consensus 164 --Dp~vk~~L~fL~~rE 178 (266)
T d1jkva_ 164 --DEGVRDMLKFLLARE 178 (266)
T ss_dssp --CHHHHHHHHHHHHHH
T ss_pred --ChhHHHHHHHHHHHH
Confidence 456777777777665
No 2
>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.96 E-value=30 Score=21.91 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHhhhCCCCCCCCCCHHHHhhhCCCCCCcHHHHHHHhhcC
Q 041195 144 EEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPPDSTLRDVVVVIRAD 194 (195)
Q Consensus 144 EEeAv~tYt~~l~~i~~g~l~~~paP~iA~~Yw~lp~~atl~Dvi~~IRaD 194 (195)
.|||+..|..+|++. ++++.+|..++...|..|
T Consensus 9 ~Ee~~~~Fk~LL~e~------------------~i~~~~~W~~~~~k~~~D 41 (69)
T d2doda1 9 LEARMKQFKDMLLER------------------GVSAFSTWEKELHKIVFD 41 (69)
T ss_dssp HHHHHHHHHHHHHHT------------------TCCSSSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHc------------------CCCCCCCHHHHHHHhccC
Confidence 589999999999996 356667777777777666
No 3
>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=29.47 E-value=17 Score=25.20 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=25.3
Q ss_pred ChhhHHHhhhhhhhHHHHHHHHHHHhhh
Q 041195 132 SPKLAHRIVGYLEEEAVNSYTEFLKDLE 159 (195)
Q Consensus 132 sPr~ahrfvgylEEeAv~tYt~~l~~i~ 159 (195)
+|..+-.+.--+|+.++.+|.+.++.++
T Consensus 79 d~~~~l~~a~~~E~~a~~~Y~~~~~~~~ 106 (142)
T d2ib0a1 79 SAADAARLAVRMENDGATAWRAVVEHAE 106 (142)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6788999999999999999999998874
No 4
>d2cwla1 a.25.1.3 (A:1-299) Manganese catalase (T-catalase) {Thermus thermophilus [TaxId: 274]}
Probab=29.23 E-value=15 Score=30.21 Aligned_cols=124 Identities=11% Similarity=0.035 Sum_probs=77.8
Q ss_pred hhhhhhcCCCchHHHHHHHHHHhhccccCcc--hHH-HHHHHHHHHHHHHHHHHHh-----c-CC----------cH---
Q 041195 51 MLLETVGAVPGMVGGMLLHCKSLRKFEHSGG--WIK-ALLEEAENERMHLMTFIEL-----A-RP----------QW--- 108 (195)
Q Consensus 51 ~~LETVA~VPgmv~~~~~HL~slr~m~rd~g--wI~-~lleEaeNErmHLl~~~~l-----~-~p----------~~--- 108 (195)
.++|-++|.=|=..++++-|+.--.++.+.. .++ .|++=|--|..|+-++-.+ + .| ..
T Consensus 25 ~l~e~~GG~~GEmsa~mqYl~Q~~~~~~~~~~~~~~dll~dIatEEl~HlEmvat~I~~Ll~~~p~~~~~~~~dp~~~~~ 104 (299)
T d2cwla1 25 AVQALLGGRFGEMSTLMNYMYQSFNFRGKKALKPYYDLIANIATEELGHIELVAATINSLLAKNPGKDLEEGVDPESAPL 104 (299)
T ss_dssp HHGGGTTSTTSHHHHHHHHHHHHHHCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSTTCSCCCCCCGGGCTT
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhccCchhhHH
Confidence 4789999998877777788886555654432 344 5677888999999766543 1 11 10
Q ss_pred -------HHHHHHHHHHHHHH-----HHHHHHHHh---ChhhHHHhhhhhhhHHHHHHHHHHHhhhCCCCCCCCCCHHHH
Q 041195 109 -------YERALVFAVQGVFF-----NAYFLAYLA---SPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAI 173 (195)
Q Consensus 109 -------~~R~lv~~~Q~vf~-----~~~~~~Yl~---sPr~ahrfvgylEEeAv~tYt~~l~~i~~g~l~~~paP~iA~ 173 (195)
...-.+.+.|+.+. +-+...|+. ++...-+-.=..|..|..+|.+.++.+
T Consensus 105 ~~~~~~~n~~h~i~~g~g~~~~ds~G~pWt~~Yv~~sGnl~aDL~~Ni~aE~~Ar~~y~rl~~~t--------------- 169 (299)
T d2cwla1 105 GFAKDVRNAAHFIAGGANSLVMGAMGEHWNGEYVFTSGNLILDLLHNFFLEVAARTHKLRVYEMT--------------- 169 (299)
T ss_dssp GGGGSSSCSHHHHTSSSSCCSBCTTSCBCBGGGCCCCSCHHHHHHHHHHHHHHHHHHHHHHHTTC---------------
T ss_pred HhhhccCChhhhhccCCCCCccCCCCCcCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc---------------
Confidence 00112222222211 012233444 356677777788999999999987776
Q ss_pred hhhCCCCCCcHHHHHHHhhcCC
Q 041195 174 DYWRLPPDSTLRDVVVVIRADE 195 (195)
Q Consensus 174 ~Yw~lp~~atl~Dvi~~IRaDE 195 (195)
+|-.++|++.-+++||
T Consensus 170 ------dDp~vkd~L~fLi~RE 185 (299)
T d2cwla1 170 ------DNPVAREMIGYLLVRG 185 (299)
T ss_dssp ------CCHHHHHHHHHHHHHH
T ss_pred ------CCccHHHHHHHHHHHH
Confidence 4567788887777665
No 5
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=22.80 E-value=22 Score=24.03 Aligned_cols=25 Identities=20% Similarity=-0.015 Sum_probs=17.7
Q ss_pred hhHHHhhhhhhhHHHHHHHHHHHhh
Q 041195 134 KLAHRIVGYLEEEAVNSYTEFLKDL 158 (195)
Q Consensus 134 r~ahrfvgylEEeAv~tYt~~l~~i 158 (195)
.-+.+..--.|..|+..|.+..+..
T Consensus 98 ~~~l~~a~~~E~~a~~~Y~~la~~~ 122 (158)
T d2fzfa1 98 IDLIRWAMKAEEIAAEFYLKLEEMV 122 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555567899999999877664
No 6
>d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.57 E-value=68 Score=20.03 Aligned_cols=33 Identities=30% Similarity=0.576 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHhhhCCCCCCCCCCHHHHhhhCCCCCCcHHHHHHHhhcC
Q 041195 144 EEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRLPPDSTLRDVVVVIRAD 194 (195)
Q Consensus 144 EEeAv~tYt~~l~~i~~g~l~~~paP~iA~~Yw~lp~~atl~Dvi~~IRaD 194 (195)
-|+|...+..+|++. ++++..|..+++..|..|
T Consensus 12 keeak~~F~~LL~e~------------------~v~~~~~W~~~~~~~~~D 44 (69)
T d1uzca_ 12 KEEAKQAFKELLKEK------------------RVPSNASWEQAMKMIIND 44 (69)
T ss_dssp HHHHHHHHHHHHHHT------------------TCCTTCCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHc------------------CCCCCCCHHHHHHHhccC
Confidence 378888899999986 345666677777666665
No 7
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=18.10 E-value=9.9 Score=28.75 Aligned_cols=16 Identities=38% Similarity=0.582 Sum_probs=14.0
Q ss_pred hhhhhcCCCchHHHHH
Q 041195 52 LLETVGAVPGMVGGML 67 (195)
Q Consensus 52 ~LETVA~VPgmv~~~~ 67 (195)
=+|..+++||.|||.+
T Consensus 101 G~E~l~gIPGtvGGai 116 (198)
T d1uxya1 101 GLENLALIPGCVGSSP 116 (198)
T ss_dssp SCGGGTTCCSBGGGTT
T ss_pred cchhhcccccccchhh
Confidence 4899999999999865
No 8
>d2py8a1 a.280.1.1 (A:2-121) RuBisCo chaperone RbcX {Synechocystis sp., strain PCC 6803 [TaxId: 1143]}
Probab=15.98 E-value=94 Score=21.99 Aligned_cols=44 Identities=18% Similarity=0.118 Sum_probs=26.4
Q ss_pred HHHHhhhhhhhhccccccchhhhhhhhcCCCchHHHHHHHHHHhhccccCc-chHHHHHHH
Q 041195 30 TVQALKFPTHLFFQRRHMCHAMLLETVGAVPGMVGGMLLHCKSLRKFEHSG-GWIKALLEE 89 (195)
Q Consensus 30 ~vk~lr~~~D~~~~~r~~~R~~~LETVA~VPgmv~~~~~HL~slr~m~rd~-gwI~~lleE 89 (195)
+.+++|.++|-+.+.++ + ...++|=.+-+..-+|| .||+.|+.|
T Consensus 18 Ty~Avr~Vl~QL~etnp--------------~--~~~wL~~f~~~~~~~DGd~fl~~L~~e 62 (120)
T d2py8a1 18 TYQAVLRIQSELGETNP--------------P--QAIWLNQYLASHSIQNGETFLTELLDE 62 (120)
T ss_dssp HHHHHHHHHHHHHHHCH--------------H--HHHHHHHHHHHSCCSSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCc--------------H--HHHHHHHHHhcCCCCCHHHHHHHHHhh
Confidence 34567778888877543 2 23333444445444555 588888886
No 9
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]}
Probab=15.20 E-value=51 Score=21.97 Aligned_cols=76 Identities=22% Similarity=0.201 Sum_probs=40.9
Q ss_pred HHHH-HHHHHHHHHHHHHHHHhc-CCcH--HHHHHHHHHHHH---HHHHHHHHHHhChhhHHHhhhhhhhHHHHHHHHHH
Q 041195 83 IKAL-LEEAENERMHLMTFIELA-RPQW--YERALVFAVQGV---FFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFL 155 (195)
Q Consensus 83 I~~l-leEaeNErmHLl~~~~l~-~p~~--~~R~lv~~~Q~v---f~~~~~~~Yl~sPr~ahrfvgylEEeAv~tYt~~l 155 (195)
++.+ ..=|..|+.|..++.++. +.+. ..........+. ...........++..+.+..--.|..|+..|..+.
T Consensus 36 ~~~~f~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~E~~a~~~Y~~l~ 115 (149)
T d1vjxa_ 36 IKKTFLELADQERIHAEIFRKMSDQENWDEVDSYLAGYAFYEVFPDTSEILRRKDLTLKEVLDIAISVEKDSIILYYELK 115 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTCBCCSBCCCCCCCCCTTGGGCSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHhhhhhhhhhHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554 445788999999998874 2111 000000000000 00001112223466677777778999999998887
Q ss_pred Hhh
Q 041195 156 KDL 158 (195)
Q Consensus 156 ~~i 158 (195)
+..
T Consensus 116 ~~~ 118 (149)
T d1vjxa_ 116 DGL 118 (149)
T ss_dssp HHC
T ss_pred HHC
Confidence 766
No 10
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=14.09 E-value=36 Score=25.06 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=16.5
Q ss_pred hhhhhhhcCCCchHHHHHH
Q 041195 50 AMLLETVGAVPGMVGGMLL 68 (195)
Q Consensus 50 ~~~LETVA~VPgmv~~~~~ 68 (195)
..-+|..+++||.|||.+.
T Consensus 117 l~g~e~~~gipgtvGGai~ 135 (194)
T d1hska1 117 LTGLEFACGIPGSIGGAVY 135 (194)
T ss_dssp EESCGGGTTCCSBHHHHHH
T ss_pred cccccccCCcceeehhhhh
Confidence 4578999999999999875
Done!