BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041198
(93 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AYA|A Chain A, Crystal Structure Of Id2 Hlh Homodimer At 2.1a
Resolution
pdb|4AYA|B Chain B, Crystal Structure Of Id2 Hlh Homodimer At 2.1a
Resolution
Length = 97
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 21 QIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVD 65
+ D SKL++L+P + + KVS +ILQ DYI L +D
Sbjct: 39 NMNDCYSKLKELVPSIPQNK--KVSKMEILQHVIDYILDLQIALD 81
>pdb|1JEQ|B Chain B, Crystal Structure Of The Ku Heterodimer
pdb|1JEY|B Chain B, Crystal Structure Of The Ku Heterodimer Bound To Dna
Length = 565
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 20/28 (71%)
Query: 26 VSKLQQLIPELRSRRSDKVSASKILQET 53
+SK++ L P + +++ D+V+A +I Q+
Sbjct: 530 LSKIKTLFPLIEAKKKDQVTAQEIFQDN 557
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 26 VSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVDD--LSDRLSELLASI----- 78
VS+ +LIP+L + ++ S + + T + I + +++D L D+ +E+L +I
Sbjct: 123 VSQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMR 182
Query: 79 ---DSNSAEAAIIRSLL 92
SN+ + A +LL
Sbjct: 183 KEEPSNNVKLAATNALL 199
>pdb|2NRJ|A Chain A, Crystal Structure Of Hemolysin Binding Component From
Bacillus Cereus
Length = 346
Score = 25.4 bits (54), Expect = 7.3, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 24 DLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVDDLSDRLS 72
D + KL+ L+ ELR KV+ ++++ I H+ +DD + L+
Sbjct: 226 DNLGKLEPLLAELRQTVDYKVTLNRVVGVAYSNINEXHKALDDAINALT 274
>pdb|1UYV|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain L1705i
V1967i Mutant
pdb|1UYV|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain L1705i
V1967i Mutant
pdb|1UYV|C Chain C, Acetyl-Coa Carboxylase Carboxyltransferase Domain L1705i
V1967i Mutant
Length = 737
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 20 DQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREV-----------DDLS 68
+++ D +++L ELRS+ S+K A ++ Q+ + RE+ DL
Sbjct: 557 EKLLDTMNRLDDKYRELRSQLSNKSLAPEVHQQISKQLADRERELLPIYGQISLQFADLH 616
Query: 69 DRLSELLA 76
DR S ++A
Sbjct: 617 DRSSRMVA 624
>pdb|1UYR|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Diclofop
pdb|1UYR|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Diclofop
pdb|1UYT|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1UYT|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1UYT|C Chain C, Acetyl-Coa Carboxylase Carboxyltransferase Domain
Length = 737
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 20 DQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREV-----------DDLS 68
+++ D +++L ELRS+ S+K A ++ Q+ + RE+ DL
Sbjct: 557 EKLLDTMNRLDDKYRELRSQLSNKSLAPEVHQQISKQLADRERELLPIYGQISLQFADLH 616
Query: 69 DRLSELLA 76
DR S ++A
Sbjct: 617 DRSSRMVA 624
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.337
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,605,687
Number of Sequences: 62578
Number of extensions: 42739
Number of successful extensions: 189
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 173
Number of HSP's gapped (non-prelim): 19
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)