BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041198
(93 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CA64|BH135_ARATH Transcription factor bHLH135 OS=Arabidopsis thaliana GN=BHLH135
PE=1 SV=1
Length = 93
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/77 (74%), Positives = 71/77 (92%), Gaps = 3/77 (3%)
Query: 17 ISYDQIGDLVSKLQQLIPELR-SRRSDKVSASKILQETCDYIRSLHREVDDLSDRLSELL 75
IS DQI DL+ KLQQL+PELR SRRSDKVSA+++LQ+TC+YIR+LHREVDDLS+RLSELL
Sbjct: 17 ISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELL 76
Query: 76 ASIDSNSAEAAIIRSLL 92
A +S++A+AA+IRSLL
Sbjct: 77 A--NSDTAQAALIRSLL 91
>sp|P41134|ID1_HUMAN DNA-binding protein inhibitor ID-1 OS=Homo sapiens GN=ID1 PE=1 SV=3
Length = 155
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 16/90 (17%)
Query: 14 VSRISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVDDLSD---- 69
V+ + YD G S+L++L+P L R KVS +ILQ DYIR L E++ S+
Sbjct: 62 VNVLLYDMNG-CYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESEVGTP 118
Query: 70 ---------RLSELLASIDSNSAEAAIIRS 90
LS L I + +AEAA + +
Sbjct: 119 GGRGLPVRAPLSTLNGEISALTAEAACVPA 148
>sp|Q15853|USF2_HUMAN Upstream stimulatory factor 2 OS=Homo sapiens GN=USF2 PE=2 SV=1
Length = 346
Score = 36.2 bits (82), Expect = 0.062, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 7 RSRQSSGVSRISYDQIGDLVSKLQQLIPELRSRRSDKVSASK--ILQETCDYIRSLHREV 64
R Q + V R D+I + + +L ++IP+ + S K ASK IL + CDYIR L +
Sbjct: 236 RRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNS-KTGASKGGILSKACDYIRELRQTN 294
Query: 65 DDLSDRLSE 73
+ + E
Sbjct: 295 QRMQETFKE 303
>sp|P41135|ID1_RAT DNA-binding protein inhibitor ID-1 OS=Rattus norvegicus GN=Id1 PE=1
SV=1
Length = 164
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 14 VSRISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVDDLSD 69
V+ + YD G S+L++L+P L R KVS +ILQ DYIR L E++ S+
Sbjct: 55 VNVLLYDMNG-CYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 107
>sp|P20067|ID1_MOUSE DNA-binding protein inhibitor ID-1 OS=Mus musculus GN=Id1 PE=1 SV=3
Length = 168
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 14 VSRISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVDDLSD 69
V+ + YD G S+L++L+P L R KVS +ILQ DYIR L E++ S+
Sbjct: 55 VNVLLYDMNG-CYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 107
>sp|Q63665|USF2_RAT Upstream stimulatory factor 2 OS=Rattus norvegicus GN=Usf2 PE=1
SV=2
Length = 346
Score = 35.4 bits (80), Expect = 0.090, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 7 RSRQSSGVSRISYDQIGDLVSKLQQLIPELRSRRSDKVSASK--ILQETCDYIRSLHREV 64
R Q + V R D+I + + +L ++IP+ + S K ASK IL + CDYIR L +
Sbjct: 236 RRAQHNEVERRRRDKINNWIVQLSKIIPDCHADNS-KTGASKGGILSKACDYIRELRQTN 294
Query: 65 DDLSDRLSE 73
+ + E
Sbjct: 295 QRMQETFKE 303
>sp|Q64705|USF2_MOUSE Upstream stimulatory factor 2 OS=Mus musculus GN=Usf2 PE=1 SV=1
Length = 346
Score = 35.4 bits (80), Expect = 0.090, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 7 RSRQSSGVSRISYDQIGDLVSKLQQLIPELRSRRSDKVSASK--ILQETCDYIRSLHREV 64
R Q + V R D+I + + +L ++IP+ + S K ASK IL + CDYIR L +
Sbjct: 236 RRAQHNEVERRRRDKINNWIVQLSKIIPDCHADNS-KTGASKGGILSKACDYIRELRQTN 294
Query: 65 DDLSDRLSE 73
+ + E
Sbjct: 295 QRMQETFKE 303
>sp|O02818|USF1_RABIT Upstream stimulatory factor 1 OS=Oryctolagus cuniculus GN=USF1 PE=2
SV=1
Length = 310
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 7 RSRQSSGVSRISYDQIGDLVSKLQQLIPELRSRRSDKVSASK--ILQETCDYIRSLHREV 64
R Q + V R D+I + + +L ++IP+ S S K SK IL + CDYI+ L +
Sbjct: 200 RRAQHNEVERRRRDKINNWIVQLSKIIPDC-SMESTKSGQSKGGILSKACDYIQELRQS- 257
Query: 65 DDLSDRLSELLASIDSNSAEAAIIR 89
+ RLSE L +D + ++R
Sbjct: 258 ---NHRLSEELQGLDQLQLDNDVLR 279
>sp|P22415|USF1_HUMAN Upstream stimulatory factor 1 OS=Homo sapiens GN=USF1 PE=1 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 7 RSRQSSGVSRISYDQIGDLVSKLQQLIPELRSRRSDKVSASK--ILQETCDYIRSLHREV 64
R Q + V R D+I + + +L ++IP+ S S K SK IL + CDYI+ L +
Sbjct: 200 RRAQHNEVERRRRDKINNWIVQLSKIIPDC-SMESTKSGQSKGGILSKACDYIQELRQS- 257
Query: 65 DDLSDRLSELLASIDSNSAEAAIIR 89
+ RLSE L +D + ++R
Sbjct: 258 ---NHRLSEELQGLDQLQLDNDVLR 279
>sp|Q6XBT4|USF1_BOVIN Upstream stimulatory factor 1 OS=Bos taurus GN=USF1 PE=2 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 7 RSRQSSGVSRISYDQIGDLVSKLQQLIPELRSRRSDKVSASK--ILQETCDYIRSLHREV 64
R Q + V R D+I + + +L ++IP+ S S K SK IL + CDYI+ L +
Sbjct: 200 RRAQHNEVERRRRDKINNWIVQLSKIIPDC-SMESTKSGQSKGGILSKACDYIQELRQS- 257
Query: 65 DDLSDRLSELLASIDSNSAEAAIIR 89
+ RLSE L +D + ++R
Sbjct: 258 ---NHRLSEELQGLDQLQLDNDVLR 279
>sp|A5GIW5|CAPP_SYNPW Phosphoenolpyruvate carboxylase OS=Synechococcus sp. (strain
WH7803) GN=ppc PE=3 SV=1
Length = 1003
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Query: 4 RRSRSRQSSGVSRIS----YDQ-IGDL--VSKLQQLIPELRSRRS---DKVSASKILQET 53
R+ +R S + +S DQ GDL ++Q L+ EL++RR VS S +ET
Sbjct: 478 RQESTRHSDALDEVSRYLNPDQAYGDLNEQERVQWLLQELQTRRPLIPPSVSWSPTTEET 537
Query: 54 CDYIRSLHREVDDLSDRL 71
D R+LHR D+ R+
Sbjct: 538 VDVFRTLHRLQDEFGSRI 555
>sp|Q9M0R0|BH081_ARATH Transcription factor bHLH81 OS=Arabidopsis thaliana GN=BHLH81 PE=2
SV=1
Length = 262
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 16 RISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVDDLSD 69
R+ +I D + KLQ+L+P + + + + +L+E +Y++ L R++ +L++
Sbjct: 200 RVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKVLQRQIQELTE 249
>sp|Q8GXT3|BH123_ARATH Transcription factor bHLH123 OS=Arabidopsis thaliana GN=BHLH123
PE=2 SV=1
Length = 454
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 2 SSRRSRSRQSSGVSRISY-DQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSL 60
+++R++S +S +++GD ++ LQQL+ K A+ +L E +YI+ L
Sbjct: 329 AAKRAKSEAASPSPAFKRKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 383
Query: 61 HREVDDLSDRLSELLASIDSNSAE 84
H++V LS+ + AS+ ++
Sbjct: 384 HQQVSALSNPYMKSGASLQHQQSD 407
>sp|Q95187|IFNT_GIRCA Interferon tau OS=Giraffa camelopardalis GN=IFNT PE=3 SV=1
Length = 195
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 15 SRISYDQ-IGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVDDLSDRLSE 73
S++ DQ I L LQQ + RS + +L++ C LH+++DDL RL
Sbjct: 69 SQLQKDQAISVLHEMLQQCFNLFHTERSSAAWDNTLLEQLCT---GLHQQLDDLDARLGP 125
Query: 74 LLASIDSNSAEAAII 88
L+ DS I
Sbjct: 126 LMGQKDSGMGRMGPI 140
>sp|Q61069|USF1_MOUSE Upstream stimulatory factor 1 OS=Mus musculus GN=Usf1 PE=2 SV=1
Length = 310
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 7 RSRQSSGVSRISYDQIGDLVSKLQQLIPE--LRSRRSDKVSASKILQETCDYIRSLHREV 64
R Q + V R D+I + + +L ++IP+ + S +S + S IL + CDYI+ L +
Sbjct: 200 RRAQHNEVERRRRDKINNWIVQLSKIIPDCSMESTKSGQ-SKGGILSKACDYIQELRQS- 257
Query: 65 DDLSDRLSELLASID 79
+ RLSE L +D
Sbjct: 258 ---NHRLSEELQGLD 269
>sp|Q07957|USF1_XENBO Upstream stimulatory factor 1 OS=Xenopus borealis GN=usf1 PE=2 SV=1
Length = 307
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 7 RSRQSSGVSRISYDQIGDLVSKLQQLIPELRSRRSDKVSASK--ILQETCDYIRSLHREV 64
R Q + V R D+I + + +L ++IP+ S S K SK IL + CDYI+ L +
Sbjct: 197 RRAQHNEVERRRRDKINNWIVQLSKIIPDC-SMESTKTGQSKGGILSKACDYIQELRQS- 254
Query: 65 DDLSDRLSELLASIDSNSAEAAIIR 89
+ RLSE L ++D + ++R
Sbjct: 255 ---NLRLSEELQNLDQLQMDNEVLR 276
>sp|Q66J78|ID2B_XENLA DNA-binding protein inhibitor ID-2-B OS=Xenopus laevis GN=id2-b
PE=2 SV=1
Length = 135
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 21 QIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVD 65
+ D SKL++L+P + + KVS +ILQ DYI L +D
Sbjct: 38 NMNDCYSKLKELVPSIPPNK--KVSKMEILQHVIDYILDLQLTLD 80
>sp|Q7ZVT3|SAS6_DANRE Spindle assembly abnormal protein 6 homolog OS=Danio rerio GN=sass6
PE=1 SV=1
Length = 627
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 22 IGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVDDLSDRLS 72
I L + L+ L+ +++ + S V KILQET D ++ RE+ D RLS
Sbjct: 391 IKKLQADLKALLGKIKVKNSVTVPQEKILQETSDKLQRQQRELQDTQQRLS 441
>sp|Q9CAA9|BH049_ARATH Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2
SV=1
Length = 486
Score = 32.3 bits (72), Expect = 0.88, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 3 SRRSRSRQSSGVS-RISYDQIGDLVSKLQQLIPELRSRRSDKVSASKI-LQETCDYIRSL 60
+RR ++ S ++ R+ ++I + + LQ L+P +KV+ + L E +Y++SL
Sbjct: 305 ARRGQATNSHSLAERVRREKISERMKFLQDLVPG-----CNKVTGKAVMLDEIINYVQSL 359
Query: 61 HREVDDLSDRLSELLASIDSN 81
R+V+ LS +L+ + +D N
Sbjct: 360 QRQVEFLSMKLATVNPQMDFN 380
>sp|Q6PBD7|ID2_XENTR DNA-binding protein inhibitor ID-2 OS=Xenopus tropicalis GN=id2
PE=2 SV=1
Length = 132
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 21 QIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVD 65
+ D SKL++L+P + + KVS +ILQ DYI L +D
Sbjct: 38 NMNDCYSKLKELVPSIPQNK--KVSKMEILQHVIDYILDLQLALD 80
>sp|Q9PWJ5|ID2A_XENLA DNA-binding protein inhibitor ID-2-A OS=Xenopus laevis GN=id2-a
PE=2 SV=1
Length = 133
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 21 QIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVD 65
+ D SKL++L+P + + KVS +ILQ DYI L +D
Sbjct: 38 NMNDCYSKLKELVPSIPQNK--KVSKMEILQHVIDYILDLQLTLD 80
>sp|Q9SFZ3|BH110_ARATH Transcription factor bHLH110 OS=Arabidopsis thaliana GN=BHLH110
PE=2 SV=2
Length = 453
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 5 RSRSRQSSGVSRISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREV 64
R SR S ++ +++GD ++ LQQL+ K + +L E YI+ L ++
Sbjct: 321 RVESRSSCPPFKVRKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQSQI 375
Query: 65 DDLS 68
+ LS
Sbjct: 376 ETLS 379
>sp|Q5RCH7|ID2_PONAB DNA-binding protein inhibitor ID-2 OS=Pongo abelii GN=ID2 PE=2
SV=1
Length = 134
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 13/72 (18%)
Query: 4 RRSRSRQSSGVSR----------ISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQET 53
+ S S S G+SR + Y+ + D SKL++L+P + + KVS +ILQ
Sbjct: 12 KNSLSDHSLGISRSKTPVDDPMSLLYN-MNDCYSKLKELVPSIPQNK--KVSKMEILQHV 68
Query: 54 CDYIRSLHREVD 65
DYI L +D
Sbjct: 69 IDYILDLQIALD 80
>sp|Q4R5J7|ID2_MACFA DNA-binding protein inhibitor ID-2 OS=Macaca fascicularis GN=ID2
PE=2 SV=1
Length = 134
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 13/72 (18%)
Query: 4 RRSRSRQSSGVSR----------ISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQET 53
+ S S S G+SR + Y+ + D SKL++L+P + + KVS +ILQ
Sbjct: 12 KNSLSDHSLGISRSKTPVDDPMSLLYN-MNDCYSKLKELVPSIPQNK--KVSKMEILQHV 68
Query: 54 CDYIRSLHREVD 65
DYI L +D
Sbjct: 69 IDYILDLQIALD 80
>sp|Q02363|ID2_HUMAN DNA-binding protein inhibitor ID-2 OS=Homo sapiens GN=ID2 PE=1
SV=1
Length = 134
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 13/72 (18%)
Query: 4 RRSRSRQSSGVSR----------ISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQET 53
+ S S S G+SR + Y+ + D SKL++L+P + + KVS +ILQ
Sbjct: 12 KNSLSDHSLGISRSKTPVDDPMSLLYN-MNDCYSKLKELVPSIPQNK--KVSKMEILQHV 68
Query: 54 CDYIRSLHREVD 65
DYI L +D
Sbjct: 69 IDYILDLQIALD 80
>sp|Q2VIU1|ID2_PIG DNA-binding protein inhibitor ID-2 OS=Sus scrofa GN=ID2 PE=2 SV=1
Length = 134
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 13/72 (18%)
Query: 4 RRSRSRQSSGVSR----------ISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQET 53
+ S S S G+SR + Y+ + D SKL++L+P + + KVS +ILQ
Sbjct: 12 KNSLSDHSLGISRSKTPVDDPMSLLYN-MNDCYSKLKELVPSIPQNK--KVSKMEILQHV 68
Query: 54 CDYIRSLHREVD 65
DYI L +D
Sbjct: 69 IDYILDLQIALD 80
>sp|Q3ZC46|ID2_BOVIN DNA-binding protein inhibitor ID-2 OS=Bos taurus GN=ID2 PE=2 SV=1
Length = 134
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 21 QIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVD 65
+ D SKL++L+P + + KVS +ILQ DYI L +D
Sbjct: 38 NMNDCYSKLKELVPSIPQNK--KVSKMEILQHVIDYILDLQIALD 80
>sp|Q9FJL4|BH078_ARATH Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2
SV=1
Length = 498
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 3 SRRSRSRQSSGVS-RISYDQIGDLVSKLQQLIPELRSRRSDKVSASKI-LQETCDYIRSL 60
+RR ++ S ++ R+ ++IG+ + LQ L+P +KV+ + L E +Y++SL
Sbjct: 303 ARRGQATDSHSLAERVRREKIGERMKLLQDLVPG-----CNKVTGKALMLDEIINYVQSL 357
Query: 61 HREVDDLSDRLSEL 74
R+V+ LS +LS +
Sbjct: 358 QRQVEFLSMKLSSV 371
>sp|Q6GL62|ID4_XENTR DNA-binding protein inhibitor ID-4 OS=Xenopus tropicalis GN=id4
PE=2 SV=1
Length = 131
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 13/68 (19%)
Query: 8 SRQSSGVSR----------ISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYI 57
S S GV+R + YD + D S+L++L+P + + KVS +ILQ DYI
Sbjct: 29 SEHSLGVARYKMEEEETLCLQYD-MNDCYSRLKRLVPTIPPNK--KVSKVEILQHVIDYI 85
Query: 58 RSLHREVD 65
L +D
Sbjct: 86 LDLQLALD 93
>sp|Q7ZXF3|ID4_XENLA DNA-binding protein inhibitor ID-4 OS=Xenopus laevis GN=id4 PE=2
SV=1
Length = 131
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 13/68 (19%)
Query: 8 SRQSSGVSR----------ISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYI 57
S S GV+R + YD + D S+L++L+P + + KVS +ILQ DYI
Sbjct: 29 SEHSLGVARYKMEEEETLCLQYD-MNDCYSRLKRLVPTIPPNK--KVSKVEILQHVIDYI 85
Query: 58 RSLHREVD 65
L +D
Sbjct: 86 LDLQLALD 93
>sp|P41137|ID2_RAT DNA-binding protein inhibitor ID-2 OS=Rattus norvegicus GN=Id2
PE=1 SV=1
Length = 134
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 13/72 (18%)
Query: 4 RRSRSRQSSGVSR----------ISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQET 53
+ S S S G+SR + Y+ + D SKL++L+P + + KV+ +ILQ
Sbjct: 12 KNSLSDHSLGISRSKTPVDDPMSLLYN-MNDCYSKLKELVPSIPQNK--KVTKMEILQHV 68
Query: 54 CDYIRSLHREVD 65
DYI L +D
Sbjct: 69 IDYILDLQIALD 80
>sp|P41136|ID2_MOUSE DNA-binding protein inhibitor ID-2 OS=Mus musculus GN=Id2 PE=1
SV=3
Length = 134
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 13/72 (18%)
Query: 4 RRSRSRQSSGVSR----------ISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQET 53
+ S S S G+SR + Y+ + D SKL++L+P + + KV+ +ILQ
Sbjct: 12 KNSLSDHSLGISRSKTPVDDPMSLLYN-MNDCYSKLKELVPSIPQNK--KVTKMEILQHV 68
Query: 54 CDYIRSLHREVD 65
DYI L +D
Sbjct: 69 IDYILDLQIALD 80
>sp|Q07956|USF_STRPU Upstream stimulatory factor OS=Strongylocentrotus purpuratus PE=2
SV=1
Length = 265
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 20 DQIGDLVSKLQQLIPELRSRRSDKV-SASKILQETCDYIRSL 60
D+I + + KL ++IP+ S + S IL +TCDYI L
Sbjct: 204 DKINNWIVKLSKIIPDCNIDHSKQGQSKGGILTKTCDYIHDL 245
>sp|Q9SRT2|BH062_ARATH Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2
SV=1
Length = 456
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 3 SRRSRSRQSSGVS-RISYDQIGDLVSKLQQLIPELRSRRSDKVSASKI-LQETCDYIRSL 60
+RR ++ S ++ R+ ++I + + LQ L+P +KV+ + L E +Y++SL
Sbjct: 260 ARRGQATDSHSLAERVRREKISERMKLLQDLVPGC-----NKVTGKALMLDEIINYVQSL 314
Query: 61 HREVDDLSDRLSELLASIDSN 81
R+V+ LS +LS + +D N
Sbjct: 315 QRQVEFLSMKLSSVNTRLDFN 335
>sp|Q9I8A3|HEY1_XENLA Hairy/enhancer-of-split related with YRPW motif protein 1
OS=Xenopus laevis GN=hey1 PE=1 SV=1
Length = 294
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 20 DQIGDLVSKLQQLIP-ELRSRRSDKVSASKILQETCDYIRSLH 61
D+I + +S+L++L+P + S K+ ++ILQ T D+++ LH
Sbjct: 58 DRINNSLSELRRLVPSAFEKQGSAKLEKAEILQMTVDHLKMLH 100
>sp|Q2KIN4|HEY1_BOVIN Hairy/enhancer-of-split related with YRPW motif protein 1 OS=Bos
taurus GN=HEY1 PE=2 SV=1
Length = 304
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 20 DQIGDLVSKLQQLIP-ELRSRRSDKVSASKILQETCDYIRSLH 61
D+I + +S+L++L+P + S K+ ++ILQ T D+++ LH
Sbjct: 63 DRINNSLSELRRLVPSAFEKQGSAKLEKAEILQMTVDHLKMLH 105
>sp|Q66KK8|HEY1_XENTR Hairy/enhancer-of-split related with YRPW motif protein 1
OS=Xenopus tropicalis GN=hey1 PE=2 SV=1
Length = 300
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 20 DQIGDLVSKLQQLIP-ELRSRRSDKVSASKILQETCDYIRSLH 61
D+I + +S+L++L+P + S K+ ++ILQ T D+++ LH
Sbjct: 62 DRINNSLSELRRLVPSAFEKQGSAKLEKAEILQMTVDHLKMLH 104
>sp|Q9Y5J3|HEY1_HUMAN Hairy/enhancer-of-split related with YRPW motif protein 1 OS=Homo
sapiens GN=HEY1 PE=1 SV=1
Length = 304
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 20 DQIGDLVSKLQQLIP-ELRSRRSDKVSASKILQETCDYIRSLH 61
D+I + +S+L++L+P + S K+ ++ILQ T D+++ LH
Sbjct: 63 DRINNSLSELRRLVPSAFEKQGSAKLEKAEILQMTVDHLKMLH 105
>sp|Q8AXV6|HEY1_DANRE Hairy/enhancer-of-split related with YRPW motif protein 1 OS=Danio
rerio GN=hey1 PE=2 SV=1
Length = 317
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 20 DQIGDLVSKLQQLIP-ELRSRRSDKVSASKILQETCDYIRSLH 61
D+I + +S+L++L+P + S K+ ++ILQ T D+++ LH
Sbjct: 62 DRINNSLSELRRLVPSAFEKQGSAKLEKAEILQMTVDHLKMLH 104
>sp|Q9TSZ2|HEY1_CANFA Hairy/enhancer-of-split related with YRPW motif protein 1 OS=Canis
familiaris GN=HEY1 PE=2 SV=1
Length = 304
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 20 DQIGDLVSKLQQLIP-ELRSRRSDKVSASKILQETCDYIRSLH 61
D+I + +S+L++L+P + S K+ ++ILQ T D+++ LH
Sbjct: 63 DRINNSLSELRRLVPSAFEKQGSAKLEKAEILQMTVDHLKMLH 105
>sp|Q9C8P8|BH080_ARATH Transcription factor bHLH80 OS=Arabidopsis thaliana GN=BHLH80 PE=1
SV=1
Length = 259
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/55 (21%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 16 RISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVDDLSDR 70
R+ +I D + +LQ+L+P + + + + +L+E +Y+++L ++ +L+++
Sbjct: 197 RVRRTRISDRIRRLQELVPNM----DKQTNTADMLEEAVEYVKALQSQIQELTEQ 247
>sp|Q9WV93|HEY1_MOUSE Hairy/enhancer-of-split related with YRPW motif protein 1 OS=Mus
musculus GN=Hey1 PE=1 SV=1
Length = 299
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 20 DQIGDLVSKLQQLIP-ELRSRRSDKVSASKILQETCDYIRSLH 61
D+I + +S+L++L+P + S K+ ++ILQ T D+++ LH
Sbjct: 63 DRINNSLSELRRLVPSAFEKQGSAKLEKAEILQMTVDHLKMLH 105
>sp|Q9ZUG9|BH066_ARATH Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2
SV=1
Length = 350
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 1 MSSRRSRSRQSSGVS-RISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRS 59
+ +RR ++ ++ R+ ++I + + LQ+L+P ++DK S +L E DY++
Sbjct: 138 IRARRGQATDPHSIAERLRRERIAERMKALQELVPN--GNKTDKAS---MLDEIIDYVKF 192
Query: 60 LHREVDDLSDRLSELLASIDSNSAEAA 86
L +V LS AS+ S +EA
Sbjct: 193 LQLQVKVLSMSRLGGAASVSSQISEAG 219
>sp|Q7TS99|HELT_MOUSE Hairy and enhancer of split-related protein HELT OS=Mus musculus
GN=Helt PE=1 SV=1
Length = 240
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 20 DQIGDLVSKLQQLIP-ELRSRRSDKVSASKILQETCDYIRSLHREVDDLSDRLSELLASI 78
D+I +++L + +P L + S K+ ++IL+ T Y+R+LH D R ELLA
Sbjct: 24 DRINRCLNELGKTVPMALAKQSSGKLEKAEILEMTVQYLRALH-SADFPRGREKELLAEF 82
>sp|Q8VIP2|MLXPL_RAT Carbohydrate-responsive element-binding protein OS=Rattus
norvegicus GN=Mlxipl PE=1 SV=1
Length = 865
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 29 LQQLIPELRSRRSDKVSASKILQETCDYI-------RSLHREVDDLSDRLSELLASID 79
L L+ L ++ S KVS + LQ+T +YI ++ E L D + EL A+I+
Sbjct: 685 LHGLVSTLSAQPSLKVSKATTLQKTAEYILMLQQERAAMQEEAQQLRDEIEELNAAIN 742
>sp|Q9NP71|MLXPL_HUMAN Carbohydrate-responsive element-binding protein OS=Homo sapiens
GN=MLXIPL PE=1 SV=1
Length = 852
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 29 LQQLIPELRSRRSDKVSASKILQETCDYI-------RSLHREVDDLSDRLSELLASID 79
L L+ L ++ S KVS + LQ+T +YI L E L D + EL A+I+
Sbjct: 672 LHGLVSTLSAQPSLKVSKATTLQKTAEYILMLQQERAGLQEEAQQLRDEIEELNAAIN 729
>sp|Q94JL3|BH112_ARATH Transcription factor bHLH112 OS=Arabidopsis thaliana GN=BHLH112
PE=2 SV=1
Length = 393
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 16 RISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVDDLS 68
++ + + D ++ LQQL+ K + +LQE +YI+ LH +V LS
Sbjct: 280 KVRKENLRDQITSLQQLVSPF-----GKTDTASVLQEAIEYIKFLHDQVTVLS 327
>sp|Q5E7N1|ISPH_VIBF1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Vibrio
fischeri (strain ATCC 700601 / ES114) GN=ispH PE=3 SV=1
Length = 314
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 12/78 (15%)
Query: 15 SRISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVDDL------- 67
+ +S D+ D++ +L+++ PE++ R D + + Q D +R + +VD +
Sbjct: 167 TTLSVDETADVIDELRRVFPEIQGPRKDDICYAT--QNRQDAVRDMASQVDVMIVVGSKN 224
Query: 68 ---SDRLSELLASIDSNS 82
S+RL EL + + S
Sbjct: 225 SSNSNRLRELSEKLGTTS 242
>sp|Q7TMA5|APOB_RAT Apolipoprotein B-100 OS=Rattus norvegicus GN=Apob PE=1 SV=1
Length = 4743
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 22 IGDLVSKLQQLIPELRSRRSDKVSA--SKILQETCDYIRSLHREVDDLSDRLS 72
+ D+ K ++ + EL +++ + + + + T DY+R LH ++ D SD+LS
Sbjct: 4363 LADINGKGREKVAELSIVVKERIKSWSTAVAEITSDYLRQLHSKLQDFSDQLS 4415
>sp|Q99MZ3|MLXPL_MOUSE Carbohydrate-responsive element-binding protein OS=Mus musculus
GN=Mlxipl PE=1 SV=1
Length = 864
Score = 29.3 bits (64), Expect = 6.5, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 29 LQQLIPELRSRRSDKVSASKILQETCDYI-------RSLHREVDDLSDRLSELLASID 79
L L+ L ++ S KVS + LQ+T +YI ++ E L D + EL A+I+
Sbjct: 684 LHGLVSTLSAQPSLKVSKATTLQKTAEYILMLQQERAAMQEEAQQLRDEIEELNAAIN 741
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.127 0.319
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,644,591
Number of Sequences: 539616
Number of extensions: 726922
Number of successful extensions: 5034
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 4956
Number of HSP's gapped (non-prelim): 145
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)