Query 041198
Match_columns 93
No_of_seqs 47 out of 49
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 07:35:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041198.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041198hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 98.9 6.4E-09 2.2E-13 67.3 7.0 60 15-78 14-73 (82)
2 1hlo_A Protein (transcription 98.8 1.5E-08 5.1E-13 64.7 7.0 55 17-74 22-76 (80)
3 1a0a_A BHLH, protein (phosphat 98.8 4.3E-09 1.5E-13 65.9 3.1 52 14-65 9-62 (63)
4 1nkp_B MAX protein, MYC proto- 98.7 3.8E-08 1.3E-12 62.9 7.2 54 18-74 13-66 (83)
5 1an4_A Protein (upstream stimu 98.5 2.1E-08 7E-13 61.6 0.4 52 14-65 12-64 (65)
6 4ati_A MITF, microphthalmia-as 98.5 3.1E-07 1.1E-11 63.1 6.0 56 14-70 34-89 (118)
7 1nkp_A C-MYC, MYC proto-oncoge 98.4 1.8E-06 6E-11 56.7 7.4 55 17-73 16-70 (88)
8 3u5v_A Protein MAX, transcript 98.3 3E-07 1E-11 59.6 3.2 52 14-67 12-64 (76)
9 4h10_B Circadian locomoter out 98.3 1.1E-06 3.6E-11 56.9 5.2 49 15-67 16-64 (71)
10 1nlw_A MAD protein, MAX dimeri 98.3 2.8E-06 9.6E-11 55.1 6.6 56 17-74 11-66 (80)
11 4h10_A ARYL hydrocarbon recept 98.0 9.5E-06 3.2E-10 52.2 5.1 48 14-62 16-63 (73)
12 4ath_A MITF, microphthalmia-as 97.9 3.6E-05 1.2E-09 51.5 6.3 54 19-73 4-57 (83)
13 2ql2_B Neurod1, neurogenic dif 97.5 0.00011 3.8E-09 45.5 4.5 48 16-65 11-58 (60)
14 1mdy_A Protein (MYOD BHLH doma 97.4 0.00015 5.1E-09 46.0 3.9 49 15-66 20-68 (68)
15 4f3l_A Mclock, circadian locom 97.1 0.00039 1.3E-08 52.2 3.7 46 13-62 18-63 (361)
16 2lfh_A DNA-binding protein inh 97.0 0.0011 3.7E-08 43.0 4.6 46 15-62 22-67 (68)
17 4f3l_B BMAL1B; BHLH, PAS, circ 96.7 0.0022 7.6E-08 48.9 5.4 48 14-62 20-67 (387)
18 4aya_A DNA-binding protein inh 96.1 0.01 3.6E-07 40.4 5.4 43 21-65 39-81 (97)
19 2di0_A Activating signal coint 82.9 0.9 3.1E-05 29.3 2.7 26 12-37 3-28 (71)
20 3coq_A Regulatory protein GAL4 77.1 3.2 0.00011 24.9 3.8 27 55-81 45-71 (89)
21 1t2k_D Cyclic-AMP-dependent tr 75.4 6.4 0.00022 23.3 4.7 50 43-92 10-59 (61)
22 3ayh_A DNA-directed RNA polyme 74.8 0.94 3.2E-05 31.1 0.9 20 15-34 117-136 (136)
23 1zme_C Proline utilization tra 69.7 5.7 0.0002 22.9 3.5 24 55-78 44-67 (70)
24 2wt7_A Proto-oncogene protein 68.7 10 0.00036 22.7 4.6 51 41-91 9-59 (63)
25 2er8_A Regulatory protein Leu3 68.3 2.9 9.8E-05 24.5 2.0 20 55-74 49-68 (72)
26 1xaw_A Occludin; coiled-coil, 62.3 4.4 0.00015 28.9 2.3 42 46-87 50-94 (140)
27 2r17_C Vacuolar protein sortin 61.9 4.7 0.00016 31.3 2.6 46 13-59 252-297 (298)
28 1jnm_A Proto-oncogene C-JUN; B 61.4 4.6 0.00016 24.1 2.0 39 42-80 9-47 (62)
29 1ci6_A Transcription factor AT 58.8 19 0.00066 21.7 4.5 52 41-92 9-60 (63)
30 3eab_G CHMP1B; spastin, MIT, E 58.1 3.7 0.00013 24.4 1.1 14 61-74 35-48 (50)
31 2zxy_A Cytochrome C552, cytoch 57.9 5.5 0.00019 22.5 1.8 18 15-32 69-86 (87)
32 3fwb_A Cell division control p 57.5 11 0.00038 22.8 3.3 32 1-32 1-32 (161)
33 3cu4_A Cytochrome C family pro 56.4 8.4 0.00029 22.1 2.5 19 16-34 67-85 (85)
34 3dp5_A OMCF, cytochrome C fami 55.9 8.2 0.00028 23.5 2.5 19 16-34 81-99 (99)
35 1gks_A Cytochrome C551; haloph 54.6 8.9 0.00031 22.1 2.4 18 15-32 60-77 (78)
36 3ph2_B Cytochrome C6; photosyn 54.0 11 0.00039 21.2 2.8 18 15-32 64-81 (86)
37 2z5i_A TM, general control pro 54.0 16 0.00054 21.7 3.4 22 51-72 8-29 (52)
38 3dr0_A Cytochrome C6; photosyn 53.5 11 0.00037 21.4 2.6 19 15-33 70-88 (93)
39 3dmi_A Cytochrome C6; electron 53.0 12 0.00041 21.2 2.8 18 15-32 65-82 (88)
40 3twe_A Alpha4H; unknown functi 52.7 11 0.00039 20.4 2.4 17 59-75 5-21 (27)
41 1gdv_A Cytochrome C6; RED ALGA 52.7 12 0.00042 21.0 2.8 18 15-32 63-80 (85)
42 3azd_A Short alpha-tropomyosin 52.7 8.2 0.00028 21.6 1.9 24 55-78 11-34 (37)
43 3mtu_E Head morphogenesis prot 51.1 39 0.0013 22.1 5.3 53 13-73 2-55 (77)
44 2xze_Q Charged multivesicular 50.0 11 0.00037 22.0 2.2 13 20-32 26-38 (40)
45 1c6r_A Cytochrome C6; electron 49.3 15 0.00051 21.0 2.8 20 15-34 66-85 (89)
46 1f1f_A Cytochrome C6; heme, pr 48.9 15 0.00052 20.8 2.8 19 15-33 67-85 (89)
47 3rrk_A V-type ATPase 116 kDa s 48.8 26 0.0009 25.8 4.7 65 20-84 63-128 (357)
48 1cno_A Cytochrome C552; electr 48.5 14 0.00048 21.4 2.6 20 15-34 65-84 (87)
49 1cyi_A Cytochrome C6, cytochro 48.4 15 0.00052 21.0 2.7 20 15-34 65-84 (90)
50 1c53_A Cytochrome C553; electr 47.8 11 0.00039 21.5 2.1 18 15-32 62-79 (79)
51 1ayg_A Cytochrome C-552; elect 47.6 13 0.00044 21.2 2.3 17 16-32 63-79 (80)
52 1a56_A C-551, ferricytochrome 47.4 13 0.00045 21.2 2.3 18 15-32 63-80 (81)
53 4fhz_A Phospholipase/carboxyle 47.0 11 0.00038 27.2 2.4 38 15-54 248-285 (285)
54 2exv_A Cytochrome C-551; alpha 46.6 12 0.00042 21.1 2.1 17 16-32 65-81 (82)
55 1wdc_A Scallop myosin; calcium 45.7 31 0.0011 20.1 3.9 39 18-56 1-44 (64)
56 1cch_A Cytochrome C551; electr 45.6 15 0.0005 20.7 2.3 17 16-32 65-81 (82)
57 2l4d_A SCO1/SENC family protei 45.4 15 0.00051 21.7 2.4 21 16-36 80-100 (110)
58 1ls9_A Cytochrome C6; omega lo 45.4 18 0.00063 20.8 2.8 20 15-34 68-87 (91)
59 2d0s_A Cytochrome C, cytochrom 44.8 10 0.00036 21.5 1.6 18 15-32 61-78 (79)
60 2zon_G Cytochrome C551; nitrit 44.5 17 0.00058 20.9 2.5 17 16-32 69-85 (87)
61 1c75_A Cytochrome C-553; heme, 44.5 15 0.00052 20.5 2.2 18 15-32 53-70 (71)
62 1w2l_A Cytochrome oxidase subu 43.3 14 0.00047 21.5 2.0 18 15-32 81-98 (99)
63 2qr4_A Peptidase M3B, oligoend 42.1 1.3E+02 0.0044 24.0 8.9 68 17-85 3-70 (587)
64 1wve_C 4-cresol dehydrogenase 42.0 20 0.00069 20.7 2.6 20 15-34 56-75 (80)
65 2zzs_A Cytochrome C554; C-type 41.4 19 0.00064 21.3 2.4 18 15-32 85-102 (103)
66 2c1d_B SOXX; sulfur oxidation, 41.3 17 0.00059 23.0 2.3 17 16-32 119-135 (137)
67 3c98_B Syntaxin-1A; protein co 41.1 81 0.0028 21.3 6.7 58 21-78 51-115 (279)
68 2ce0_A Cytochrome C6; chloropl 40.9 23 0.00078 20.8 2.7 20 15-34 77-96 (105)
69 2oqq_A Transcription factor HY 40.8 22 0.00075 21.1 2.6 37 55-91 3-39 (42)
70 4h62_V Mediator of RNA polymer 39.2 13 0.00046 20.7 1.4 17 12-28 4-20 (31)
71 2v4h_A NF-kappa-B essential mo 37.6 99 0.0034 21.3 6.0 20 12-31 16-35 (110)
72 3hho_A CO-chaperone protein HS 37.5 1E+02 0.0034 21.3 6.4 27 45-71 146-172 (174)
73 1kmi_Z CHEZ, chemotaxis protei 36.5 1.2E+02 0.0042 22.0 7.8 45 45-89 106-150 (214)
74 3viq_B Mating-type switching p 35.3 94 0.0032 20.4 6.5 30 46-78 36-67 (85)
75 1kx2_A Mono-heme C-type cytoch 34.9 19 0.00066 20.8 1.7 17 15-31 63-79 (81)
76 2wuj_A Septum site-determining 34.5 42 0.0014 19.8 3.2 30 45-74 24-53 (57)
77 1h32_B Cytochrome C, SOXX; ele 34.4 20 0.00069 22.7 1.8 17 16-32 120-136 (138)
78 3h0g_D DNA-directed RNA polyme 34.1 75 0.0026 21.7 4.8 71 17-91 25-96 (135)
79 2jee_A YIIU; FTSZ, septum, coi 34.0 60 0.0021 21.2 4.1 25 51-75 16-40 (81)
80 1m70_A Cytochrome C4; electron 33.5 24 0.00084 22.9 2.2 18 15-32 172-189 (190)
81 1ccr_A Cytochrome C; electron 33.4 29 0.001 20.9 2.4 16 17-32 95-110 (112)
82 3cp5_A Cytochrome C; electron 33.1 31 0.0011 21.0 2.5 20 15-34 103-122 (124)
83 1xkm_B Distinctin chain B; por 32.8 44 0.0015 17.9 2.7 17 50-66 6-22 (26)
84 1f1c_A Cytochrome C549; dimeri 32.7 34 0.0012 20.8 2.7 19 16-34 104-122 (129)
85 2wvq_A Small S protein; prion- 32.7 35 0.0012 24.8 3.1 18 20-37 165-182 (225)
86 1c52_A Cytochrome-C552; electr 32.6 55 0.0019 20.6 3.7 20 16-35 74-93 (131)
87 1pyi_A Protein (pyrimidine pat 32.5 46 0.0016 20.0 3.2 25 55-79 48-72 (96)
88 1h1o_A Cytochrome C-552; elect 32.0 30 0.001 22.3 2.4 18 15-32 166-183 (183)
89 2lhi_A Calmodulin, serine/thre 31.6 13 0.00043 24.5 0.5 16 13-28 1-16 (176)
90 3m91_A Proteasome-associated A 31.4 48 0.0016 19.8 3.1 43 19-68 8-50 (51)
91 1pd7_B MAD1; PAH2, SIN3, eukar 31.3 49 0.0017 17.8 2.8 18 48-65 6-23 (26)
92 1dh3_A Transcription factor CR 31.1 51 0.0017 19.4 3.1 25 54-78 21-45 (55)
93 2ekf_A Ancient ubiquitous prot 30.3 29 0.001 21.6 2.0 25 13-37 4-28 (61)
94 3he4_B Synzip5; heterodimeric 30.1 70 0.0024 19.0 3.6 23 50-72 5-30 (46)
95 2ejs_A Autocrine motility fact 30.0 36 0.0012 20.9 2.4 25 13-37 4-28 (58)
96 1xwj_B Talin, metavinculin; ce 29.9 42 0.0014 17.2 2.3 21 59-79 5-25 (26)
97 3hd7_B Syntaxin-1A; membrane p 29.7 49 0.0017 21.5 3.2 26 49-74 8-33 (109)
98 1hwt_C Protein (heme activator 28.7 19 0.00066 21.1 0.9 19 55-73 58-76 (81)
99 2d9d_A BAG family molecular ch 28.6 58 0.002 21.9 3.4 39 18-60 8-46 (89)
100 2dgc_A Protein (GCN4); basic d 28.5 70 0.0024 19.3 3.5 36 42-77 17-52 (63)
101 1uk5_A BAG-family molecular ch 28.0 72 0.0025 21.8 3.9 44 20-79 30-73 (111)
102 1uii_A Geminin; human, DNA rep 27.7 1E+02 0.0035 20.3 4.5 27 48-74 39-65 (83)
103 3zcc_A HAMP, osmolarity sensor 27.0 65 0.0022 18.1 3.0 18 19-36 36-53 (114)
104 1qn2_A Cytochrome CH; electron 26.2 42 0.0014 19.9 2.2 16 17-32 84-99 (100)
105 1i54_A Cytochrome C; zinc-porp 26.1 45 0.0015 19.5 2.3 17 16-32 84-101 (103)
106 1ez3_A Syntaxin-1A; three heli 26.0 48 0.0016 20.9 2.5 22 49-70 55-76 (127)
107 2rjz_A PILO protein; structura 25.9 1.2E+02 0.0041 20.5 4.7 35 57-91 17-51 (147)
108 2w9k_A Cytochrome C, cytochrom 25.8 38 0.0013 20.5 2.0 17 16-32 96-112 (114)
109 3o0r_C Nitric oxide reductase 25.8 45 0.0015 21.0 2.4 17 17-33 117-133 (146)
110 2l5g_B Putative uncharacterize 25.4 40 0.0014 19.9 1.9 16 18-33 21-36 (42)
111 1m1j_C Fibrinogen gamma chain; 25.3 1.9E+02 0.0064 23.3 6.4 19 59-77 116-134 (409)
112 1gd2_E Transcription factor PA 25.1 68 0.0023 20.0 3.1 24 51-74 25-48 (70)
113 2dwf_A Pulmonary surfactant-as 24.9 32 0.0011 19.6 1.4 13 24-36 6-18 (34)
114 1cc5_A Cytochrome C5; electron 24.9 43 0.0015 19.7 2.1 15 16-30 67-81 (83)
115 3sjl_A Methylamine utilization 24.4 39 0.0013 26.8 2.2 19 15-33 332-350 (373)
116 4dnd_A Syntaxin-10, SYN10; str 24.3 1.7E+02 0.0058 19.8 5.4 19 19-37 33-51 (130)
117 2z15_A Protein TOB1; human TOB 24.3 80 0.0027 21.7 3.6 15 62-76 30-44 (130)
118 1m2x_A Class B carbapenemase B 24.2 79 0.0027 20.9 3.5 47 18-65 171-220 (223)
119 2zxx_A Geminin; coiled-coil, c 24.2 1.3E+02 0.0046 19.4 4.5 29 48-76 27-55 (79)
120 1oeg_A Apolipoprotein E; siali 23.8 44 0.0015 17.8 1.7 16 19-34 7-22 (26)
121 2jr2_A UPF0352 protein CPS_261 23.7 58 0.002 21.3 2.6 22 14-35 4-25 (76)
122 3o5c_A Cytochrome C551 peroxid 22.9 44 0.0015 25.8 2.2 19 15-33 273-291 (320)
123 3zzp_A TS9, ribosomal protein 22.7 63 0.0022 20.1 2.6 22 15-36 54-75 (77)
124 1m7k_A Silencer of death domai 22.6 1.4E+02 0.0048 19.9 4.4 47 17-79 21-67 (99)
125 1dip_A Delta-sleep-inducing pe 22.6 25 0.00087 23.2 0.7 30 61-90 14-43 (78)
126 2bl0_A Major plasmodial myosin 22.4 56 0.0019 18.9 2.2 37 20-56 1-42 (63)
127 2gc4_D Cytochrome C-L; electro 22.4 62 0.0021 20.7 2.6 19 15-33 106-124 (147)
128 1ycc_A Cytochrome C; electron 22.3 58 0.002 19.3 2.3 15 18-32 92-106 (108)
129 4g3o_A E3 ubiquitin-protein li 22.2 58 0.002 20.1 2.3 19 19-37 14-32 (58)
130 1mz4_A Cytochrome C550; PSII a 22.2 59 0.002 20.4 2.4 19 16-34 106-124 (137)
131 2juw_A UPF0352 protein SO_2176 21.8 62 0.0021 21.3 2.5 22 14-35 4-25 (80)
132 1kdx_A CBP; complex (transcrip 21.8 1.7E+02 0.0057 18.8 5.2 49 15-67 8-57 (81)
133 3qtm_A Uncharacterized protein 21.6 60 0.0021 26.3 2.8 53 24-76 290-342 (346)
134 2jpq_A UPF0352 protein VP2129; 21.6 67 0.0023 21.3 2.6 22 14-35 4-25 (83)
135 2jrx_A UPF0352 protein YEJL; h 21.5 65 0.0022 21.4 2.6 22 14-35 4-25 (83)
136 3zs7_A Pyridoxal kinase; trans 21.2 2.4E+02 0.0082 20.4 6.9 74 15-88 54-156 (300)
137 4aan_A Cytochrome C551 peroxid 21.2 47 0.0016 25.8 2.1 19 15-33 299-317 (341)
138 3oqi_A YVMC, putative uncharac 21.1 1.9E+02 0.0065 22.2 5.4 56 12-67 38-107 (257)
139 2juz_A UPF0352 protein HI0840; 20.9 66 0.0022 21.2 2.5 22 14-35 4-25 (80)
140 3e9v_A Protein BTG2; B-cell tr 20.8 1.4E+02 0.0048 20.3 4.2 27 50-76 6-40 (120)
141 3ce2_A Putative peptidase; str 20.8 2.7E+02 0.0091 22.4 6.5 65 18-84 32-102 (618)
142 1co6_A Protein (cytochrome C2) 20.7 61 0.0021 19.3 2.2 17 18-34 86-102 (107)
143 3n0l_A Serine hydroxymethyltra 20.7 84 0.0029 22.1 3.1 19 17-35 370-388 (417)
144 3rmi_A Chorismate mutase prote 20.5 1.3E+02 0.0045 19.6 3.9 25 52-76 9-33 (114)
145 2dnx_A Syntaxin-12; snare, HAB 20.4 1.9E+02 0.0066 19.0 6.4 54 21-75 25-78 (130)
146 1ssz_A Pulmonary surfactant-as 20.3 43 0.0015 18.9 1.3 14 24-37 6-19 (34)
147 1s94_A S-syntaxin; three helix 20.3 1.2E+02 0.0041 20.4 3.8 16 21-36 47-62 (180)
148 3oqv_A ALBC; rossman fold, cyc 20.2 1.4E+02 0.0049 22.7 4.6 58 12-69 38-109 (247)
149 3msv_A Nuclear import adaptor, 20.1 76 0.0026 26.1 3.2 53 24-76 337-389 (393)
150 1xg0_B Phycoerythrin alpha-2 c 20.1 54 0.0018 21.0 1.8 14 44-57 52-65 (67)
151 1pwb_A SP-D, PSP-D, pulmonary 20.0 91 0.0031 20.3 3.1 20 57-76 33-52 (177)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=98.87 E-value=6.4e-09 Score=67.28 Aligned_cols=60 Identities=23% Similarity=0.356 Sum_probs=52.1
Q ss_pred CCCcHhHHHHHHHHHHHhchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 041198 15 SRISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVDDLSDRLSELLASI 78 (93)
Q Consensus 15 srisddqI~dLvsKLQ~LLP~~~~r~~~~~SaskvLqETC~YIrsLhrEVddLSerLsqLl~s~ 78 (93)
++-..+.||+.+..|+.|||.. +.+.+.+.||++|+.||+.||.+++.|.+...+|=..+
T Consensus 14 ErrRR~~in~~f~~L~~lvP~~----~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 14 EKRYRSSINDKIIELKDLVVGT----EAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCS----SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445689999999999999984 46789999999999999999999999999988876543
No 2
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=98.81 E-value=1.5e-08 Score=64.74 Aligned_cols=55 Identities=25% Similarity=0.482 Sum_probs=49.2
Q ss_pred CcHhHHHHHHHHHHHhchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041198 17 ISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVDDLSDRLSEL 74 (93)
Q Consensus 17 isddqI~dLvsKLQ~LLP~~~~r~~~~~SaskvLqETC~YIrsLhrEVddLSerLsqL 74 (93)
=..+.||+.+..|+.+||.+. +.+.|.+.||+.|++||+.|+.+++.|.+.+.+|
T Consensus 22 ~RR~~in~~f~~Lr~lvP~~~---~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 22 KRRDHIKDSFHSLRDSVPSLQ---GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHSGGGT---TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHCcCCC---CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999886 3578999999999999999999999999988766
No 3
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=98.76 E-value=4.3e-09 Score=65.88 Aligned_cols=52 Identities=21% Similarity=0.395 Sum_probs=45.5
Q ss_pred CCCCcHhHHHHHHHHHHHhchhhhhhc--cccchHHHHHHHHHHHHHHHHHHHH
Q 041198 14 VSRISYDQIGDLVSKLQQLIPELRSRR--SDKVSASKILQETCDYIRSLHREVD 65 (93)
Q Consensus 14 asrisddqI~dLvsKLQ~LLP~~~~r~--~~~~SaskvLqETC~YIrsLhrEVd 65 (93)
+++-..+.||+.+..|+.|||.+.... +.+.|.|.+|+.||.||+.||+||.
T Consensus 9 aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 9 AEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp GTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 566678999999999999999996544 5688999999999999999999874
No 4
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=98.74 E-value=3.8e-08 Score=62.88 Aligned_cols=54 Identities=26% Similarity=0.503 Sum_probs=45.6
Q ss_pred cHhHHHHHHHHHHHhchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041198 18 SYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVDDLSDRLSEL 74 (93)
Q Consensus 18 sddqI~dLvsKLQ~LLP~~~~r~~~~~SaskvLqETC~YIrsLhrEVddLSerLsqL 74 (93)
..+.||+.+..|+.+||.+. +.+.|.+.||+.|++||+.|+.++..|.+.+.+|
T Consensus 13 RR~~in~~f~~Lr~lvP~~~---~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L 66 (83)
T 1nkp_B 13 RRDHIKDSFHSLRDSVPSLQ---GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 66 (83)
T ss_dssp HHHHHHHHHHHHHTTSGGGT---TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999875 4678999999999999999997777666655554
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=98.48 E-value=2.1e-08 Score=61.65 Aligned_cols=52 Identities=27% Similarity=0.455 Sum_probs=43.3
Q ss_pred CCCCcHhHHHHHHHHHHHhchhhhhh-ccccchHHHHHHHHHHHHHHHHHHHH
Q 041198 14 VSRISYDQIGDLVSKLQQLIPELRSR-RSDKVSASKILQETCDYIRSLHREVD 65 (93)
Q Consensus 14 asrisddqI~dLvsKLQ~LLP~~~~r-~~~~~SaskvLqETC~YIrsLhrEVd 65 (93)
.++-..+.||+.+..|+.|||.+... +..+.+.+.||++||+||+.|+.|+.
T Consensus 12 ~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 12 VERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 34556789999999999999998643 23477999999999999999998863
No 6
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=98.46 E-value=3.1e-07 Score=63.06 Aligned_cols=56 Identities=30% Similarity=0.439 Sum_probs=46.5
Q ss_pred CCCCcHhHHHHHHHHHHHhchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041198 14 VSRISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVDDLSDR 70 (93)
Q Consensus 14 asrisddqI~dLvsKLQ~LLP~~~~r~~~~~SaskvLqETC~YIrsLhrEVddLSer 70 (93)
+++-..+.||+-+..|+.|+|.+... ..+.+.+-||+.|+.||+.||.+++.|.+-
T Consensus 34 ~ERrRR~~In~~~~~L~~lvP~~~~~-~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 34 IERRRRFNINDRIKELGTLIPKSNDP-DMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566789999999999999998542 346789999999999999999999999864
No 7
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=98.36 E-value=1.8e-06 Score=56.72 Aligned_cols=55 Identities=24% Similarity=0.314 Sum_probs=45.9
Q ss_pred CcHhHHHHHHHHHHHhchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041198 17 ISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVDDLSDRLSE 73 (93)
Q Consensus 17 isddqI~dLvsKLQ~LLP~~~~r~~~~~SaskvLqETC~YIrsLhrEVddLSerLsq 73 (93)
=..+.|++.+..|+.++|.+.. +.|.|.+.||+.|+.||+.|+.+...+.+-..+
T Consensus 16 ~RR~~ln~~f~~Lr~~vP~~~~--~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~ 70 (88)
T 1nkp_A 16 QRRNELKRSFFALRDQIPELEN--NEKAPKVVILKKATAYILSVQAEEQKLISEEDL 70 (88)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTT--CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999999853 457899999999999999999988776654443
No 8
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=98.33 E-value=3e-07 Score=59.59 Aligned_cols=52 Identities=23% Similarity=0.297 Sum_probs=43.8
Q ss_pred CCCCcHhHHHHHHHHHHHhchhhhhhccccc-hHHHHHHHHHHHHHHHHHHHHHH
Q 041198 14 VSRISYDQIGDLVSKLQQLIPELRSRRSDKV-SASKILQETCDYIRSLHREVDDL 67 (93)
Q Consensus 14 asrisddqI~dLvsKLQ~LLP~~~~r~~~~~-SaskvLqETC~YIrsLhrEVddL 67 (93)
.+|-..+.||+-+..|+.++|... .+++. |...||+.||.||+.|+++|.++
T Consensus 12 ~ER~Rr~~IN~~f~~Lr~~vP~~~--~~~K~~sK~~IL~~AieYI~~Lq~~l~e~ 64 (76)
T 3u5v_A 12 LERKRRRDINEAFRELGRMCQMHL--KSDKAQTKLLILQQAVQVILGLEQQVRER 64 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--CCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhHHHHHHHHHHHHHHcCCCC--CccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677899999999999999754 24555 78899999999999999999875
No 9
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=98.30 E-value=1.1e-06 Score=56.90 Aligned_cols=49 Identities=24% Similarity=0.414 Sum_probs=41.8
Q ss_pred CCCcHhHHHHHHHHHHHhchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHH
Q 041198 15 SRISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVDDL 67 (93)
Q Consensus 15 srisddqI~dLvsKLQ~LLP~~~~r~~~~~SaskvLqETC~YIrsLhrEVddL 67 (93)
++-..+.||+.+..|+.|||. .+.+...+-||+.||.||+.|+.++.-|
T Consensus 16 ErrRRd~IN~~i~eL~~LvP~----~~~K~dK~sIL~~aI~yik~Lq~~~~~~ 64 (71)
T 4h10_B 16 EKKRRDQFNVLIKELGSMLPG----NARKMDKSTVLQKSIDFLRKHKEITAWL 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHTTSSS----CCSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHHHhCCC----CCCCCcHHHHHHHHHHHHHHHHHhhhHH
Confidence 444578999999999999994 3457899999999999999999998644
No 10
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=98.26 E-value=2.8e-06 Score=55.10 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=46.9
Q ss_pred CcHhHHHHHHHHHHHhchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041198 17 ISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVDDLSDRLSEL 74 (93)
Q Consensus 17 isddqI~dLvsKLQ~LLP~~~~r~~~~~SaskvLqETC~YIrsLhrEVddLSerLsqL 74 (93)
-..+.|++.+.+|..++|.+. .+.+.|...||+.||.||+.|+.+...|.+...+|
T Consensus 11 ~RR~~lk~~f~~Lr~~vP~~~--~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L 66 (80)
T 1nlw_A 11 NRRAHLRLSLEKLKGLVPLGP--DSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQL 66 (80)
T ss_dssp HHHHHHHHHHHHHHHSSCCCS--SSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999873 34577888999999999999999998887766554
No 11
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=98.00 E-value=9.5e-06 Score=52.22 Aligned_cols=48 Identities=17% Similarity=0.390 Sum_probs=41.0
Q ss_pred CCCCcHhHHHHHHHHHHHhchhhhhhccccchHHHHHHHHHHHHHHHHH
Q 041198 14 VSRISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHR 62 (93)
Q Consensus 14 asrisddqI~dLvsKLQ~LLP~~~~r~~~~~SaskvLqETC~YIrsLhr 62 (93)
+++-..+.||+-+..|+.|||.+.. ...+...+-||+.|++||+.|+-
T Consensus 16 ~ERrRR~rIN~~l~eL~~LvP~~~~-~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 16 IEKRRRDKMNSFIDELASLVPTCNA-MSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHSHHHHT-CSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHcccccc-ccccccHHHHHHHHHHHHHHHhc
Confidence 4556679999999999999999863 34688999999999999999873
No 12
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=97.87 E-value=3.6e-05 Score=51.53 Aligned_cols=54 Identities=30% Similarity=0.413 Sum_probs=45.5
Q ss_pred HhHHHHHHHHHHHhchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041198 19 YDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVDDLSDRLSE 73 (93)
Q Consensus 19 ddqI~dLvsKLQ~LLP~~~~r~~~~~SaskvLqETC~YIrsLhrEVddLSerLsq 73 (93)
.+-||+-|..|-.|+|.++.. ..+.+.+-||+-||.||+.|+.|+..+.|....
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~-~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r 57 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDP-DMRWNKGTILKASVDYIRKLQREQQRAKDLENR 57 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCT-TCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCc-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456999999999999987432 347799999999999999999999988876653
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=97.54 E-value=0.00011 Score=45.47 Aligned_cols=48 Identities=19% Similarity=0.347 Sum_probs=40.8
Q ss_pred CCcHhHHHHHHHHHHHhchhhhhhccccchHHHHHHHHHHHHHHHHHHHH
Q 041198 16 RISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVD 65 (93)
Q Consensus 16 risddqI~dLvsKLQ~LLP~~~~r~~~~~SaskvLqETC~YIrsLhrEVd 65 (93)
|-.-.+||+-...|+.+||... .+.|.|...+|+.+++||..|+.-++
T Consensus 11 R~R~~~iN~af~~LR~~lP~~~--~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 11 RNRMHGLNAALDNLRKVVPCYS--KTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCC--SSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHccCCC--CcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 3445789999999999999874 35688999999999999999997664
No 14
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=97.41 E-value=0.00015 Score=46.02 Aligned_cols=49 Identities=16% Similarity=0.324 Sum_probs=40.9
Q ss_pred CCCcHhHHHHHHHHHHHhchhhhhhccccchHHHHHHHHHHHHHHHHHHHHH
Q 041198 15 SRISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVDD 66 (93)
Q Consensus 15 srisddqI~dLvsKLQ~LLP~~~~r~~~~~SaskvLqETC~YIrsLhrEVdd 66 (93)
+|-.-..||+-...|+.+||... +.|.|...+|+.+.+||..|+.-++|
T Consensus 20 ER~R~~~iN~af~~LR~~iP~~~---~~KlSKi~tLr~Ai~YI~~L~~~L~~ 68 (68)
T 1mdy_A 20 ERRRLSKVNEAFETLKRSTSSNP---NQRLPKVEILRNAIRYIEGLQALLRD 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSCT---TSCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCC---CCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 33445789999999999999753 56889999999999999999976653
No 15
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=97.08 E-value=0.00039 Score=52.21 Aligned_cols=46 Identities=24% Similarity=0.456 Sum_probs=39.5
Q ss_pred CCCCCcHhHHHHHHHHHHHhchhhhhhccccchHHHHHHHHHHHHHHHHH
Q 041198 13 GVSRISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHR 62 (93)
Q Consensus 13 ~asrisddqI~dLvsKLQ~LLP~~~~r~~~~~SaskvLqETC~YIrsLhr 62 (93)
-++|-..|+||+.+..|..|||. ...|...+-||+.||+|||.++.
T Consensus 18 ~~e~~rr~~~n~~~~~l~~~~p~----~~~~~dk~~il~~~~~~~~~~~~ 63 (361)
T 4f3l_A 18 KSEKKRRDQFNVLIKELGSMLPG----NARKMDKSTVLQKSIDFLRKHKE 63 (361)
T ss_dssp -CHHHHHHHHHHHHHHHHHTCCS----SSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC----CCCCcCHHHHHHHHHHHHHHHHh
Confidence 45777889999999999999993 35688889999999999999874
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=96.97 E-value=0.0011 Score=42.98 Aligned_cols=46 Identities=30% Similarity=0.480 Sum_probs=39.2
Q ss_pred CCCcHhHHHHHHHHHHHhchhhhhhccccchHHHHHHHHHHHHHHHHH
Q 041198 15 SRISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHR 62 (93)
Q Consensus 15 srisddqI~dLvsKLQ~LLP~~~~r~~~~~SaskvLqETC~YIrsLhr 62 (93)
+|-.-..+|+-..+|+.+||... .+.|.|.-++||-+.+||.-||.
T Consensus 22 ER~Rm~~lN~aF~~LR~~VP~~p--~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 22 PLSLLDDMNHCYSRLRELVPGVP--RGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CSCSSSHHHHHHHHHHHHCCCCC--TTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCC--CCCCccHHHHHHHHHHHHHHHHc
Confidence 44455789999999999999985 34688999999999999999973
No 17
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=96.74 E-value=0.0022 Score=48.87 Aligned_cols=48 Identities=17% Similarity=0.378 Sum_probs=40.8
Q ss_pred CCCCcHhHHHHHHHHHHHhchhhhhhccccchHHHHHHHHHHHHHHHHH
Q 041198 14 VSRISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHR 62 (93)
Q Consensus 14 asrisddqI~dLvsKLQ~LLP~~~~r~~~~~SaskvLqETC~YIrsLhr 62 (93)
++|=..|+||+.+..|..|||..+ ....|...+-||+.||+|||.|+.
T Consensus 20 ~ek~rR~~~n~~~~~L~~l~p~~~-~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 20 IEKRRRDKMNSFIDELASLVPTCN-AMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHH-HCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred hhhcchHHHHHHHHHHHHhcCCCC-ccccccCHHHHHHHHHHHHHHhhc
Confidence 455567999999999999999874 345678899999999999999874
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=96.14 E-value=0.01 Score=40.41 Aligned_cols=43 Identities=40% Similarity=0.623 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhchhhhhhccccchHHHHHHHHHHHHHHHHHHHH
Q 041198 21 QIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVD 65 (93)
Q Consensus 21 qI~dLvsKLQ~LLP~~~~r~~~~~SaskvLqETC~YIrsLhrEVd 65 (93)
++|+-..+|+..||... .+.|.|.-++|+-+++||..|+.-++
T Consensus 39 ~lN~AF~~LR~~vP~~p--~~kKLSKIETLRlAi~YI~~Lq~~L~ 81 (97)
T 4aya_A 39 NMNDCYSKLKELVPSIP--QNKKVSKMEILQHVIDYILDLQIALD 81 (97)
T ss_dssp HHHHHHHHHHHHCTTSC--SSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCC--CCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 39999999999999874 34678999999999999998876544
No 19
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=82.85 E-value=0.9 Score=29.31 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=23.8
Q ss_pred CCCCCCcHhHHHHHHHHHHHhchhhh
Q 041198 12 SGVSRISYDQIGDLVSKLQQLIPELR 37 (93)
Q Consensus 12 ~~asrisddqI~dLvsKLQ~LLP~~~ 37 (93)
+|++.++.-++...|+.++.|+|++.
T Consensus 3 ~~~~~~~~~~l~s~I~qV~DLfPdLG 28 (71)
T 2di0_A 3 SGSSGMCGVELDSLISQVKDLLPDLG 28 (71)
T ss_dssp CCCSCCSSHHHHHHHHHHHHHCCSSC
T ss_pred CCCCCCcHHHHHHHHHHHHHHcccCC
Confidence 47788999999999999999999995
No 20
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=77.13 E-value=3.2 Score=24.88 Aligned_cols=27 Identities=7% Similarity=0.174 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 041198 55 DYIRSLHREVDDLSDRLSELLASIDSN 81 (93)
Q Consensus 55 ~YIrsLhrEVddLSerLsqLl~s~D~n 81 (93)
.||..|+..|+.|-..|.+|....|++
T Consensus 45 ~~~~~L~~r~~~le~~l~~l~~~~~l~ 71 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLIFPREDLD 71 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchhhH
Confidence 599999999999999999998887763
No 21
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=75.40 E-value=6.4 Score=23.35 Aligned_cols=50 Identities=26% Similarity=0.365 Sum_probs=36.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhh
Q 041198 43 KVSASKILQETCDYIRSLHREVDDLSDRLSELLASIDSNSAEAAIIRSLL 92 (93)
Q Consensus 43 ~~SaskvLqETC~YIrsLhrEVddLSerLsqLl~s~D~ns~~a~iirsLL 92 (93)
+++|++-=+--=.|+..|+.+|+.|...-.+|-..+..=-.+-+-++.+|
T Consensus 10 r~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 10 RAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777766666779999999999999998888877654344455555554
No 22
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=74.76 E-value=0.94 Score=31.10 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=18.8
Q ss_pred CCCcHhHHHHHHHHHHHhch
Q 041198 15 SRISYDQIGDLVSKLQQLIP 34 (93)
Q Consensus 15 srisddqI~dLvsKLQ~LLP 34 (93)
.|++||||.+++..++..||
T Consensus 117 ~Rfsee~ie~IL~~i~~~lp 136 (136)
T 3ayh_A 117 ERFKEEDIFKLVEKINTTFP 136 (136)
T ss_dssp HHHTTTTHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHHhCc
Confidence 58999999999999999998
No 23
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=69.71 E-value=5.7 Score=22.85 Aligned_cols=24 Identities=21% Similarity=0.527 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 041198 55 DYIRSLHREVDDLSDRLSELLASI 78 (93)
Q Consensus 55 ~YIrsLhrEVddLSerLsqLl~s~ 78 (93)
.||..|+.+|+.|-..|.+|-..+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488889999999988888876543
No 24
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=68.68 E-value=10 Score=22.72 Aligned_cols=51 Identities=24% Similarity=0.283 Sum_probs=36.1
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHh
Q 041198 41 SDKVSASKILQETCDYIRSLHREVDDLSDRLSELLASIDSNSAEAAIIRSL 91 (93)
Q Consensus 41 ~~~~SaskvLqETC~YIrsLhrEVddLSerLsqLl~s~D~ns~~a~iirsL 91 (93)
..+++|++-=+---.||..|+.+|+.|...=.+|-..++.=..+..-++.+
T Consensus 9 rNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 9 RNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788887777778999999999999988888777654333344444443
No 25
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=68.28 E-value=2.9 Score=24.49 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041198 55 DYIRSLHREVDDLSDRLSEL 74 (93)
Q Consensus 55 ~YIrsLhrEVddLSerLsqL 74 (93)
.||..|+.+|+.|-..|.+|
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999888765
No 26
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=62.31 E-value=4.4 Score=28.93 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CCCcHHHHH
Q 041198 46 ASKILQETCDYIRSLHREVDDLSDRLSELLASI---DSNSAEAAI 87 (93)
Q Consensus 46 askvLqETC~YIrsLhrEVddLSerLsqLl~s~---D~ns~~a~i 87 (93)
=-.+.+.--.=-+.||.||++.+.++++|-.-+ .-++++-..
T Consensus 50 YK~~F~~dy~EYk~Lhaev~~v~~~F~~Ld~~L~~l~~~s~e~~~ 94 (140)
T 1xaw_A 50 YKRNFDTGLQEYKSLQSVLDEINKELSRLDKELDDYREESEEYMA 94 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 334444444445899999999999999976554 445655443
No 27
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=61.89 E-value=4.7 Score=31.32 Aligned_cols=46 Identities=17% Similarity=0.348 Sum_probs=34.2
Q ss_pred CCCCCcHhHHHHHHHHHHHhchhhhhhccccchHHHHHHHHHHHHHH
Q 041198 13 GVSRISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRS 59 (93)
Q Consensus 13 ~asrisddqI~dLvsKLQ~LLP~~~~r~~~~~SaskvLqETC~YIrs 59 (93)
|.+.||.+-||.||...+.-++.... +..-....+-++.|+.||++
T Consensus 252 g~~~Vt~~~in~LI~lI~~~l~~~~~-~~~~~~~~~~f~~tl~yI~~ 297 (298)
T 2r17_C 252 ENDAVTIQVLNQLIQKIREDLPNLES-SEETEQINKHFHNTLEHLRL 297 (298)
T ss_dssp TCTTSCHHHHHHHHHHHHTTTTSSCC-CHHHHHHHHHHHHHHHHTTC
T ss_pred CCCcccHHHHHHHHHHHHHHhhcccC-ccchHHHHHHHHHHHHHHhc
Confidence 44669999999999999998865422 11123466889999999974
No 28
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=61.39 E-value=4.6 Score=24.13 Aligned_cols=39 Identities=26% Similarity=0.351 Sum_probs=30.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 041198 42 DKVSASKILQETCDYIRSLHREVDDLSDRLSELLASIDS 80 (93)
Q Consensus 42 ~~~SaskvLqETC~YIrsLhrEVddLSerLsqLl~s~D~ 80 (93)
.+++|.+-=+---.||..|+.+|+.|...=++|-..+..
T Consensus 9 Nr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~ 47 (62)
T 1jnm_A 9 NRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANM 47 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777789999999999998887777766543
No 29
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=58.83 E-value=19 Score=21.66 Aligned_cols=52 Identities=21% Similarity=0.278 Sum_probs=36.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhh
Q 041198 41 SDKVSASKILQETCDYIRSLHREVDDLSDRLSELLASIDSNSAEAAIIRSLL 92 (93)
Q Consensus 41 ~~~~SaskvLqETC~YIrsLhrEVddLSerLsqLl~s~D~ns~~a~iirsLL 92 (93)
..+++|++-=|---.++..|+.+|++|...=.+|-..++.=..+...++.||
T Consensus 9 rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 9 QNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777778888888888888887777766654344455555554
No 30
>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=58.13 E-value=3.7 Score=24.37 Aligned_cols=14 Identities=50% Similarity=0.714 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHH
Q 041198 61 HREVDDLSDRLSEL 74 (93)
Q Consensus 61 hrEVddLSerLsqL 74 (93)
.-|-|+|++||+.|
T Consensus 35 ~~~eD~L~~RLaaL 48 (50)
T 3eab_G 35 SAEQDELSQRLARL 48 (50)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHH
Confidence 44789999999976
No 31
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=57.94 E-value=5.5 Score=22.50 Aligned_cols=18 Identities=11% Similarity=0.093 Sum_probs=15.2
Q ss_pred CCCcHhHHHHHHHHHHHh
Q 041198 15 SRISYDQIGDLVSKLQQL 32 (93)
Q Consensus 15 srisddqI~dLvsKLQ~L 32 (93)
..+||+||.+|+..|..|
T Consensus 69 ~~ls~~ei~~l~~yl~sl 86 (87)
T 2zxy_A 69 KGLSDAELKALADFILSH 86 (87)
T ss_dssp GGCCHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHHhc
Confidence 468999999999988764
No 32
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=57.54 E-value=11 Score=22.75 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=16.5
Q ss_pred CCCcccccccCCCCCCCcHhHHHHHHHHHHHh
Q 041198 1 MSSRRSRSRQSSGVSRISYDQIGDLVSKLQQL 32 (93)
Q Consensus 1 mssrrsrsr~~~~asrisddqI~dLvsKLQ~L 32 (93)
||++++..........++++++.++....+.+
T Consensus 1 M~~~~~~~~~~~~~~~l~~~~~~~l~~~F~~~ 32 (161)
T 3fwb_A 1 MSKNRSSLQSGPLNSELLEEQKQEIYEAFSLF 32 (161)
T ss_dssp --------CTTTTTTTSCHHHHHHHHHHHHHH
T ss_pred CCCCccccccCCCCCCCCHHHHHHHHHHHHHH
Confidence 77777654444456779999988776655554
No 33
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=56.41 E-value=8.4 Score=22.12 Aligned_cols=19 Identities=11% Similarity=-0.003 Sum_probs=16.6
Q ss_pred CCcHhHHHHHHHHHHHhch
Q 041198 16 RISYDQIGDLVSKLQQLIP 34 (93)
Q Consensus 16 risddqI~dLvsKLQ~LLP 34 (93)
.+||+||.+|+..|..+-|
T Consensus 67 ~ls~~ei~~l~~yi~~~~p 85 (85)
T 3cu4_A 67 MIPPADALKIGEYVVASFP 85 (85)
T ss_dssp TSCHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHhCc
Confidence 6999999999999987654
No 34
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=55.93 E-value=8.2 Score=23.55 Aligned_cols=19 Identities=11% Similarity=-0.003 Sum_probs=17.2
Q ss_pred CCcHhHHHHHHHHHHHhch
Q 041198 16 RISYDQIGDLVSKLQQLIP 34 (93)
Q Consensus 16 risddqI~dLvsKLQ~LLP 34 (93)
.+||+||.+|+..|..-.|
T Consensus 81 ~Lsd~ei~~l~~Yi~~~~p 99 (99)
T 3dp5_A 81 MIPPADALKIGEYVVASFP 99 (99)
T ss_dssp TSCHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHhCc
Confidence 6999999999999988776
No 35
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=54.56 E-value=8.9 Score=22.14 Aligned_cols=18 Identities=6% Similarity=0.126 Sum_probs=15.2
Q ss_pred CCCcHhHHHHHHHHHHHh
Q 041198 15 SRISYDQIGDLVSKLQQL 32 (93)
Q Consensus 15 srisddqI~dLvsKLQ~L 32 (93)
..+||+||.+|+..+...
T Consensus 60 ~~Lsd~ei~~l~~yi~~~ 77 (78)
T 1gks_A 60 GRADREDLVKAIEYMLST 77 (78)
T ss_dssp TTBCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 469999999999988754
No 36
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=54.05 E-value=11 Score=21.16 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=15.5
Q ss_pred CCCcHhHHHHHHHHHHHh
Q 041198 15 SRISYDQIGDLVSKLQQL 32 (93)
Q Consensus 15 srisddqI~dLvsKLQ~L 32 (93)
..+|++||.+|+..|..+
T Consensus 64 ~~ls~~ei~~l~~yl~~~ 81 (86)
T 3ph2_B 64 GRLTDDQIAAVAAYVLDQ 81 (86)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHh
Confidence 468999999999988775
No 37
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=54.04 E-value=16 Score=21.73 Aligned_cols=22 Identities=32% Similarity=0.378 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041198 51 QETCDYIRSLHREVDDLSDRLS 72 (93)
Q Consensus 51 qETC~YIrsLhrEVddLSerLs 72 (93)
..+..-+..|+++||||-+.|.
T Consensus 8 efAERsV~KLek~ID~LEdeL~ 29 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELY 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778899999999988775
No 38
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=53.53 E-value=11 Score=21.41 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=16.1
Q ss_pred CCCcHhHHHHHHHHHHHhc
Q 041198 15 SRISYDQIGDLVSKLQQLI 33 (93)
Q Consensus 15 srisddqI~dLvsKLQ~LL 33 (93)
..+||+||.+|+..|..+-
T Consensus 70 ~~ls~~ei~~l~~yl~~l~ 88 (93)
T 3dr0_A 70 GRLSDADIANVAAYIADQA 88 (93)
T ss_dssp TTBCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 4689999999999988763
No 39
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=53.04 E-value=12 Score=21.25 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=15.5
Q ss_pred CCCcHhHHHHHHHHHHHh
Q 041198 15 SRISYDQIGDLVSKLQQL 32 (93)
Q Consensus 15 srisddqI~dLvsKLQ~L 32 (93)
..+|++||.+|+..|..+
T Consensus 65 ~~ls~~ei~~l~~yl~~~ 82 (88)
T 3dmi_A 65 GRLSDEEIANVAAYVLAS 82 (88)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 369999999999988865
No 40
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=52.71 E-value=11 Score=20.43 Aligned_cols=17 Identities=41% Similarity=0.704 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 041198 59 SLHREVDDLSDRLSELL 75 (93)
Q Consensus 59 sLhrEVddLSerLsqLl 75 (93)
.|-+|++||-|||-.|-
T Consensus 5 elykeledlqerlrklr 21 (27)
T 3twe_A 5 ELYKELEDLQERLRKLR 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46789999999998764
No 41
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=52.69 E-value=12 Score=20.96 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=15.4
Q ss_pred CCCcHhHHHHHHHHHHHh
Q 041198 15 SRISYDQIGDLVSKLQQL 32 (93)
Q Consensus 15 srisddqI~dLvsKLQ~L 32 (93)
..+|++||.+|+..|..+
T Consensus 63 ~~ls~~ei~~l~~yl~~~ 80 (85)
T 1gdv_A 63 GRLVDEDIEDAANYVLSQ 80 (85)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 369999999999988875
No 42
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=52.69 E-value=8.2 Score=21.63 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 041198 55 DYIRSLHREVDDLSDRLSELLASI 78 (93)
Q Consensus 55 ~YIrsLhrEVddLSerLsqLl~s~ 78 (93)
.=|+.|+.|.|++.|++.++-..+
T Consensus 11 kKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 11 RKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 458899999999999999886543
No 43
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=51.10 E-value=39 Score=22.09 Aligned_cols=53 Identities=28% Similarity=0.486 Sum_probs=30.5
Q ss_pred CCCCCcHhHHHHHHHHHHHhchhhhhhccccchHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 041198 13 GVSRISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQET-CDYIRSLHREVDDLSDRLSE 73 (93)
Q Consensus 13 ~asrisddqI~dLvsKLQ~LLP~~~~r~~~~~SaskvLqET-C~YIrsLhrEVddLSerLsq 73 (93)
|+..+..|.-.|++.|| +=|++.+.- ....||.- .+|. +.+++||||-+.|..
T Consensus 2 ~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~~-~~EKTIDDLEDkL~~ 55 (77)
T 3mtu_E 2 GSGPLKPEEHEDILNKL--LDPELAQSE-----RTEALQQLRVNYG-SFVSEYNDLEEKVAH 55 (77)
T ss_dssp ------CHHHHHHHHHT--TCC---CHH-----HHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CCCCCCchhHHHHHHHh--cCHHhhhhH-----HHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34556777778888887 458874221 23556554 5664 799999999998854
No 44
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=50.01 E-value=11 Score=22.03 Aligned_cols=13 Identities=23% Similarity=0.468 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHh
Q 041198 20 DQIGDLVSKLQQL 32 (93)
Q Consensus 20 dqI~dLvsKLQ~L 32 (93)
|.|+++.++|++|
T Consensus 26 edi~~MqsRLaAL 38 (40)
T 2xze_Q 26 EALEAMQSRLATL 38 (40)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4699999999997
No 45
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=49.28 E-value=15 Score=20.97 Aligned_cols=20 Identities=10% Similarity=0.189 Sum_probs=16.5
Q ss_pred CCCcHhHHHHHHHHHHHhch
Q 041198 15 SRISYDQIGDLVSKLQQLIP 34 (93)
Q Consensus 15 srisddqI~dLvsKLQ~LLP 34 (93)
..+|++||.+|+..|..+-+
T Consensus 66 ~~ls~~ei~~l~~yl~~~~~ 85 (89)
T 1c6r_A 66 GTLDDDEIAAVAAYVYDQAS 85 (89)
T ss_dssp TTSCHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHcc
Confidence 46899999999999987643
No 46
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=48.91 E-value=15 Score=20.83 Aligned_cols=19 Identities=26% Similarity=0.235 Sum_probs=15.8
Q ss_pred CCCcHhHHHHHHHHHHHhc
Q 041198 15 SRISYDQIGDLVSKLQQLI 33 (93)
Q Consensus 15 srisddqI~dLvsKLQ~LL 33 (93)
..+|++||.+|+..|..+-
T Consensus 67 ~~ls~~ei~~l~~yl~~~~ 85 (89)
T 1f1f_A 67 GRLSPLQIEDVAAYVVDQA 85 (89)
T ss_dssp TTSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHh
Confidence 3599999999999988763
No 47
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=48.78 E-value=26 Score=25.83 Aligned_cols=65 Identities=14% Similarity=0.106 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHhchhhhhhcccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHH
Q 041198 20 DQIGDLVSKLQQLIPELRSRRSDK-VSASKILQETCDYIRSLHREVDDLSDRLSELLASIDSNSAE 84 (93)
Q Consensus 20 dqI~dLvsKLQ~LLP~~~~r~~~~-~SaskvLqETC~YIrsLhrEVddLSerLsqLl~s~D~ns~~ 84 (93)
..+.++..|++.++-.+..-...+ .+-..=+.+.-.++..+..||.+|.+++.+|-+..+--..+
T Consensus 63 ~~~~~~~~k~~~~~~~L~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 63 KRWEAVVSQAEQSLTVVGLATVPSSKPFTGSLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCCSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 356677788887777765322111 00000055556667777777777777777776665543333
No 48
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=48.46 E-value=14 Score=21.41 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=16.3
Q ss_pred CCCcHhHHHHHHHHHHHhch
Q 041198 15 SRISYDQIGDLVSKLQQLIP 34 (93)
Q Consensus 15 srisddqI~dLvsKLQ~LLP 34 (93)
..+||+||.+|+..|..+=|
T Consensus 65 ~~ls~~ei~~l~~yl~~l~~ 84 (87)
T 1cno_A 65 TALSDADIANLAAYYASNPA 84 (87)
T ss_dssp TTCCHHHHHHHHHHHHHSCT
T ss_pred hhCCHHHHHHHHHHHHhCCc
Confidence 45899999999999987644
No 49
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=48.40 E-value=15 Score=21.04 Aligned_cols=20 Identities=15% Similarity=0.219 Sum_probs=16.2
Q ss_pred CCCcHhHHHHHHHHHHHhch
Q 041198 15 SRISYDQIGDLVSKLQQLIP 34 (93)
Q Consensus 15 srisddqI~dLvsKLQ~LLP 34 (93)
..+||+||.+|+..|..+-+
T Consensus 65 ~~ls~~ei~~l~~yl~~~~~ 84 (90)
T 1cyi_A 65 DRLSEEEIQAVAEYVFKQAT 84 (90)
T ss_dssp TTSCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhccc
Confidence 35899999999998887754
No 50
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=47.78 E-value=11 Score=21.48 Aligned_cols=18 Identities=17% Similarity=0.349 Sum_probs=15.0
Q ss_pred CCCcHhHHHHHHHHHHHh
Q 041198 15 SRISYDQIGDLVSKLQQL 32 (93)
Q Consensus 15 srisddqI~dLvsKLQ~L 32 (93)
..+||+||.+|+..|..|
T Consensus 62 ~~Ls~~ei~~l~~Yl~sl 79 (79)
T 1c53_A 62 KRYSDEEMKAMADYMSKL 79 (79)
T ss_pred hhCCHHHHHHHHHHHHhC
Confidence 468999999999888754
No 51
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=47.59 E-value=13 Score=21.22 Aligned_cols=17 Identities=6% Similarity=0.149 Sum_probs=14.8
Q ss_pred CCcHhHHHHHHHHHHHh
Q 041198 16 RISYDQIGDLVSKLQQL 32 (93)
Q Consensus 16 risddqI~dLvsKLQ~L 32 (93)
.+||+||.+|+..|..|
T Consensus 63 ~Lsd~ei~~l~~yl~~l 79 (80)
T 1ayg_A 63 NVTDAEAKQLAQWILSI 79 (80)
T ss_dssp CCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 69999999999988764
No 52
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=47.43 E-value=13 Score=21.16 Aligned_cols=18 Identities=17% Similarity=0.123 Sum_probs=15.2
Q ss_pred CCCcHhHHHHHHHHHHHh
Q 041198 15 SRISYDQIGDLVSKLQQL 32 (93)
Q Consensus 15 srisddqI~dLvsKLQ~L 32 (93)
..+||+||.+|+..|..|
T Consensus 63 ~~Ls~~ei~~l~~yl~~l 80 (81)
T 1a56_A 63 VNVSDADAKALADWILTL 80 (81)
T ss_dssp CSSSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhC
Confidence 368999999999988764
No 53
>4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A*
Probab=46.99 E-value=11 Score=27.19 Aligned_cols=38 Identities=18% Similarity=0.349 Sum_probs=18.2
Q ss_pred CCCcHhHHHHHHHHHHHhchhhhhhccccchHHHHHHHHH
Q 041198 15 SRISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETC 54 (93)
Q Consensus 15 srisddqI~dLvsKLQ~LLP~~~~r~~~~~SaskvLqETC 54 (93)
-.|+.++|.+++..|++-||+...|. ++.--.+|.-||
T Consensus 248 H~i~~~~l~~~~~fL~~~Lpd~~gr~--~a~~~~~~~~~~ 285 (285)
T 4fhz_A 248 HGIAPDGLSVALAFLKERLPDACGRT--RAPPPPPLRSGC 285 (285)
T ss_dssp SSCCHHHHHHHHHHHHHHCC--------------------
T ss_pred CCCCHHHHHHHHHHHHHHCcCCcccc--cchhhhcccCCC
Confidence 34899999999999999999875443 122234455555
No 54
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=46.56 E-value=12 Score=21.08 Aligned_cols=17 Identities=18% Similarity=0.120 Sum_probs=14.6
Q ss_pred CCcHhHHHHHHHHHHHh
Q 041198 16 RISYDQIGDLVSKLQQL 32 (93)
Q Consensus 16 risddqI~dLvsKLQ~L 32 (93)
.+|++||.+|+..|..|
T Consensus 65 ~ls~~ei~~l~~yl~~l 81 (82)
T 2exv_A 65 AVSDDEAQTLAKWVLSQ 81 (82)
T ss_dssp CCCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 68999999999988754
No 55
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=45.70 E-value=31 Score=20.05 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=28.3
Q ss_pred cHhHHHHHHHHHHHhchhhhhhcc-----ccchHHHHHHHHHHH
Q 041198 18 SYDQIGDLVSKLQQLIPELRSRRS-----DKVSASKILQETCDY 56 (93)
Q Consensus 18 sddqI~dLvsKLQ~LLP~~~~r~~-----~~~SaskvLqETC~Y 56 (93)
.|+.+.+.+.++|+..-..-.|.. .+..|..++|..+..
T Consensus 1 Rd~~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~ 44 (64)
T 1wdc_A 1 RDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRK 44 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999998777644431 234678888877654
No 56
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=45.61 E-value=15 Score=20.65 Aligned_cols=17 Identities=12% Similarity=0.099 Sum_probs=14.8
Q ss_pred CCcHhHHHHHHHHHHHh
Q 041198 16 RISYDQIGDLVSKLQQL 32 (93)
Q Consensus 16 risddqI~dLvsKLQ~L 32 (93)
.+||+||.+|+..|..|
T Consensus 65 ~ls~~ei~~l~~yl~~l 81 (82)
T 1cch_A 65 PVTEEEAKILAEWVLSL 81 (82)
T ss_dssp SCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 68999999999988764
No 57
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}
Probab=45.37 E-value=15 Score=21.72 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=17.8
Q ss_pred CCcHhHHHHHHHHHHHhchhh
Q 041198 16 RISYDQIGDLVSKLQQLIPEL 36 (93)
Q Consensus 16 risddqI~dLvsKLQ~LLP~~ 36 (93)
.+|++||.+|+..|..+-+..
T Consensus 80 ~Ls~~ei~~l~~yl~~~~~~~ 100 (110)
T 2l4d_A 80 RLGDAEVSALISYLEEETARL 100 (110)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccccc
Confidence 489999999999999886543
No 58
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=45.37 E-value=18 Score=20.81 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=16.5
Q ss_pred CCCcHhHHHHHHHHHHHhch
Q 041198 15 SRISYDQIGDLVSKLQQLIP 34 (93)
Q Consensus 15 srisddqI~dLvsKLQ~LLP 34 (93)
..+|++||.+|+..|..+-+
T Consensus 68 ~~ls~~ei~~l~~yl~~~~~ 87 (91)
T 1ls9_A 68 DRLDEDDIEAVSNYVYDQAV 87 (91)
T ss_dssp TTSCHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHhcc
Confidence 46899999999999887654
No 59
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=44.76 E-value=10 Score=21.50 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=14.8
Q ss_pred CCCcHhHHHHHHHHHHHh
Q 041198 15 SRISYDQIGDLVSKLQQL 32 (93)
Q Consensus 15 srisddqI~dLvsKLQ~L 32 (93)
..+||+||.+|+..|..|
T Consensus 61 ~~Ls~~ei~~l~~yl~~l 78 (79)
T 2d0s_A 61 PQVAEADIEKIVRWVLTL 78 (79)
T ss_dssp TTSCHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHhC
Confidence 378999999999887653
No 60
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=44.52 E-value=17 Score=20.86 Aligned_cols=17 Identities=6% Similarity=0.008 Sum_probs=15.0
Q ss_pred CCcHhHHHHHHHHHHHh
Q 041198 16 RISYDQIGDLVSKLQQL 32 (93)
Q Consensus 16 risddqI~dLvsKLQ~L 32 (93)
.+|++||.+|+..|..+
T Consensus 69 ~ls~~ei~~l~~yl~~~ 85 (87)
T 2zon_G 69 AADEATLRAAVAYMMDA 85 (87)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 69999999999988765
No 61
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=44.50 E-value=15 Score=20.51 Aligned_cols=18 Identities=6% Similarity=-0.077 Sum_probs=14.6
Q ss_pred CCCcHhHHHHHHHHHHHh
Q 041198 15 SRISYDQIGDLVSKLQQL 32 (93)
Q Consensus 15 srisddqI~dLvsKLQ~L 32 (93)
..+|++||.+|+..|..+
T Consensus 53 ~~ls~~ei~~l~~yl~~~ 70 (71)
T 1c75_A 53 GIAKGAEAEAVAAWLAEK 70 (71)
T ss_dssp CSSCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 568999999999888653
No 62
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=43.32 E-value=14 Score=21.48 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=15.2
Q ss_pred CCCcHhHHHHHHHHHHHh
Q 041198 15 SRISYDQIGDLVSKLQQL 32 (93)
Q Consensus 15 srisddqI~dLvsKLQ~L 32 (93)
..+|++||.+|+..|..|
T Consensus 81 ~~ls~~ei~~l~~yl~sl 98 (99)
T 1w2l_A 81 ASLSEREVAALIEFIKQQ 98 (99)
T ss_dssp GGCCHHHHHHHHHHHHTC
T ss_pred ccCCHHHHHHHHHHHHHc
Confidence 358999999999988764
No 63
>2qr4_A Peptidase M3B, oligoendopeptidase F; structural genomics, PSI-2, protein ST initiative; 2.50A {Enterococcus faecium}
Probab=42.10 E-value=1.3e+02 Score=23.96 Aligned_cols=68 Identities=7% Similarity=0.163 Sum_probs=45.7
Q ss_pred CcHhHHHHHHHHHHHhchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHH
Q 041198 17 ISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVDDLSDRLSELLASIDSNSAEA 85 (93)
Q Consensus 17 isddqI~dLvsKLQ~LLP~~~~r~~~~~SaskvLqETC~YIrsLhrEVddLSerLsqLl~s~D~ns~~a 85 (93)
+++..+.+.+.++.+.++++..-.+.......-+.++..-+..+.+.++.+. ..+.++.++|.+++..
T Consensus 3 ~~~~a~~~~l~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~e~~~~~l~~~~-~~~~~~~s~dt~d~~~ 70 (587)
T 2qr4_A 3 LSDQEFDEKYLELSEELKQSEKHKGTLDQGASQFLNAIEFVLRVYRQTEVIY-VYAHLKNDQDTGNTDY 70 (587)
T ss_dssp CHHHHHHHHHHHHHHHGGGHHHHTTCGGGCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhcccCCCHHH
Confidence 5678899999999999999965322211223346666666666666666665 5566777888876643
No 64
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=41.96 E-value=20 Score=20.66 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=16.8
Q ss_pred CCCcHhHHHHHHHHHHHhch
Q 041198 15 SRISYDQIGDLVSKLQQLIP 34 (93)
Q Consensus 15 srisddqI~dLvsKLQ~LLP 34 (93)
..+|++||.+|+..|..+=+
T Consensus 56 ~~ls~~ei~~l~~yl~~~~~ 75 (80)
T 1wve_C 56 SYVDDESLTQVAEYLSSLPA 75 (80)
T ss_dssp TTSCHHHHHHHHHHHHHSCC
T ss_pred cCCCHHHHHHHHHHHHHCcC
Confidence 46999999999999987643
No 65
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=41.43 E-value=19 Score=21.35 Aligned_cols=18 Identities=33% Similarity=0.409 Sum_probs=14.9
Q ss_pred CCCcHhHHHHHHHHHHHh
Q 041198 15 SRISYDQIGDLVSKLQQL 32 (93)
Q Consensus 15 srisddqI~dLvsKLQ~L 32 (93)
..+||+||.+++..|..|
T Consensus 85 ~~ls~~ei~~l~~yl~~l 102 (103)
T 2zzs_A 85 SLLSDDDIANLAAYYSSL 102 (103)
T ss_dssp TTCCHHHHHHHHHHHHHC
T ss_pred hhCCHHHHHHHHHHHHhC
Confidence 468999999999888764
No 66
>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus pantotrophus}
Probab=41.34 E-value=17 Score=23.03 Aligned_cols=17 Identities=35% Similarity=0.395 Sum_probs=15.4
Q ss_pred CCcHhHHHHHHHHHHHh
Q 041198 16 RISYDQIGDLVSKLQQL 32 (93)
Q Consensus 16 risddqI~dLvsKLQ~L 32 (93)
.+|++||.+|+..|+.|
T Consensus 119 ~Ls~~ei~~l~aYl~sl 135 (137)
T 2c1d_B 119 ILNAQQIEDVVAFLVTL 135 (137)
T ss_dssp SSCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 79999999999999864
No 67
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=41.05 E-value=81 Score=21.30 Aligned_cols=58 Identities=12% Similarity=0.225 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhchhhhhh-------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 041198 21 QIGDLVSKLQQLIPELRSR-------RSDKVSASKILQETCDYIRSLHREVDDLSDRLSELLASI 78 (93)
Q Consensus 21 qI~dLvsKLQ~LLP~~~~r-------~~~~~SaskvLqETC~YIrsLhrEVddLSerLsqLl~s~ 78 (93)
+|..-|.++.+.+-++..- ...-.....-++++..-|+.+..++......+.++....
T Consensus 51 ~i~~~i~~i~~~v~el~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~ 115 (279)
T 3c98_B 51 EIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQE 115 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566666655555321 112224566678888888888888888887777776554
No 68
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*
Probab=40.90 E-value=23 Score=20.78 Aligned_cols=20 Identities=15% Similarity=0.122 Sum_probs=17.1
Q ss_pred CCCcHhHHHHHHHHHHHhch
Q 041198 15 SRISYDQIGDLVSKLQQLIP 34 (93)
Q Consensus 15 srisddqI~dLvsKLQ~LLP 34 (93)
..+||+||.+|+..|..+-+
T Consensus 77 ~~ls~~ei~~l~~yl~~~~~ 96 (105)
T 2ce0_A 77 PRLQDEEIKLLAEFVKFQAD 96 (105)
T ss_dssp CCBCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhh
Confidence 46999999999999988743
No 69
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=40.85 E-value=22 Score=21.10 Aligned_cols=37 Identities=27% Similarity=0.490 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHh
Q 041198 55 DYIRSLHREVDDLSDRLSELLASIDSNSAEAAIIRSL 91 (93)
Q Consensus 55 ~YIrsLhrEVddLSerLsqLl~s~D~ns~~a~iirsL 91 (93)
-|+-.|...|+||-.+.++|=..+..=..+-..+|-.
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4888999999999999998877654323344444443
No 70
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=39.18 E-value=13 Score=20.68 Aligned_cols=17 Identities=41% Similarity=0.655 Sum_probs=9.5
Q ss_pred CCCCCCcHhHHHHHHHH
Q 041198 12 SGVSRISYDQIGDLVSK 28 (93)
Q Consensus 12 ~~asrisddqI~dLvsK 28 (93)
||..|+.+.||.||+..
T Consensus 4 sgvtrfdekqieelldn 20 (31)
T 4h62_V 4 SGVTRFDEKQIEELLDN 20 (31)
T ss_dssp ------CHHHHHHHHHH
T ss_pred CccccccHHHHHHHHHH
Confidence 47889999999998754
No 71
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=37.57 E-value=99 Score=21.31 Aligned_cols=20 Identities=35% Similarity=0.336 Sum_probs=17.2
Q ss_pred CCCCCCcHhHHHHHHHHHHH
Q 041198 12 SGVSRISYDQIGDLVSKLQQ 31 (93)
Q Consensus 12 ~~asrisddqI~dLvsKLQ~ 31 (93)
++++++++.||++|--+|..
T Consensus 16 ~~~~~~~~~ei~~L~~~L~~ 35 (110)
T 2v4h_A 16 PRGSHMASMQLEDLRQQLQQ 35 (110)
T ss_dssp CTTCCSSCCHHHHHHHHHHH
T ss_pred cchhHhhHHHHHHHHHHHHH
Confidence 36789999999999999874
No 72
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=37.46 E-value=1e+02 Score=21.30 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041198 45 SASKILQETCDYIRSLHREVDDLSDRL 71 (93)
Q Consensus 45 SaskvLqETC~YIrsLhrEVddLSerL 71 (93)
.+|+.+=--..|+.+|+.||+.+-|+|
T Consensus 146 ~~A~~~~~kL~f~~kl~~~i~~~~~~l 172 (174)
T 3hho_A 146 LAAADQIRKLKFIAKLKNEVERVEDQL 172 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334433444789999999999988876
No 73
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=36.49 E-value=1.2e+02 Score=22.02 Aligned_cols=45 Identities=11% Similarity=0.273 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHH
Q 041198 45 SASKILQETCDYIRSLHREVDDLSDRLSELLASIDSNSAEAAIIR 89 (93)
Q Consensus 45 SaskvLqETC~YIrsLhrEVddLSerLsqLl~s~D~ns~~a~iir 89 (93)
..-.++.+|..|+.....-.+.+.+.|.+.|...|.-+--.-+|+
T Consensus 106 ~~~~l~~~~~~~l~~v~~~~~~~~~~l~eIm~AqdFQDLTGQ~I~ 150 (214)
T 1kmi_Z 106 DARELVTDTRQFLADVPAHTSFTNAQLLKIMMAQDFQDLTGQVIK 150 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 445677888999999999999999999999988876443333443
No 74
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=35.29 E-value=94 Score=20.38 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhc
Q 041198 46 ASKILQETCDYIRSLH--REVDDLSDRLSELLASI 78 (93)
Q Consensus 46 askvLqETC~YIrsLh--rEVddLSerLsqLl~s~ 78 (93)
+.++++ .||+-|| .|++|..-.|-.+++..
T Consensus 36 ~~~~~~---~hI~~Lh~YNeiKD~gq~L~g~iA~~ 67 (85)
T 3viq_B 36 AKQTVQ---KHIDLLHTYNEIRDIALGMIGKVAEH 67 (85)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 444444 6999999 59999999999988764
No 75
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=34.91 E-value=19 Score=20.81 Aligned_cols=17 Identities=0% Similarity=0.073 Sum_probs=14.1
Q ss_pred CCCcHhHHHHHHHHHHH
Q 041198 15 SRISYDQIGDLVSKLQQ 31 (93)
Q Consensus 15 srisddqI~dLvsKLQ~ 31 (93)
..+||+||.+|+..+..
T Consensus 63 ~~Lsd~ei~~l~~Yi~~ 79 (81)
T 1kx2_A 63 TDCTDEDYKAAIEFMSK 79 (81)
T ss_dssp SSCCHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 47999999999987754
No 76
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=34.48 E-value=42 Score=19.79 Aligned_cols=30 Identities=17% Similarity=0.290 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041198 45 SASKILQETCDYIRSLHREVDDLSDRLSEL 74 (93)
Q Consensus 45 SaskvLqETC~YIrsLhrEVddLSerLsqL 74 (93)
-.-..|.+...-+..|.+|..+|-+++.+|
T Consensus 24 EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 24 EVNEFLAQVRKDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888888888999999999888765
No 77
>1h32_B Cytochrome C, SOXX; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.1 PDB: 1h31_B* 1h33_B* 2oz1_B*
Probab=34.43 E-value=20 Score=22.66 Aligned_cols=17 Identities=35% Similarity=0.423 Sum_probs=15.0
Q ss_pred CCcHhHHHHHHHHHHHh
Q 041198 16 RISYDQIGDLVSKLQQL 32 (93)
Q Consensus 16 risddqI~dLvsKLQ~L 32 (93)
.+|++||.+|+..|+.|
T Consensus 120 ~Ls~~ei~~l~aYl~sl 136 (138)
T 1h32_B 120 LMTAGQIEDVVAYLMTL 136 (138)
T ss_dssp SSCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 68999999999998764
No 78
>3h0g_D DNA-directed RNA polymerase II subunit RPB4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=34.06 E-value=75 Score=21.73 Aligned_cols=71 Identities=11% Similarity=0.223 Sum_probs=41.2
Q ss_pred CcHhHHHHHHHHHHHhchhhhhhccccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhcCCCcHHHHHHHHh
Q 041198 17 ISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHRE-VDDLSDRLSELLASIDSNSAEAAIIRSL 91 (93)
Q Consensus 17 isddqI~dLvsKLQ~LLP~~~~r~~~~~SaskvLqETC~YIrsLhrE-VddLSerLsqLl~s~D~ns~~a~iirsL 91 (93)
+|-.|...++..+.. +..+..+.....+.|++.|.+|.++..+= -.+--.-+-++|.. .+...+.+.|=+|
T Consensus 25 Ls~sEv~~lL~~~~~---~r~~~~~~~~~~~~v~~kTl~Yl~~Fsk~~~~e~~~~v~~lL~~-~L~~fEia~L~NL 96 (135)
T 3h0g_D 25 LTVSEAKILIETVLA---QRARETNGEIPMTDVMKKTVAYFNVFARFKTAEATYACERILGN-RFHKFERAQLGTL 96 (135)
T ss_dssp CCHHHHHHHHHHHHH---HHHTTCCSCCCCTTHHHHHHHHHHTTCTTCSHHHHHHHHHHCCC-CSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH---HHHhcccCCcchhHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh-cCCHHHHHHHccC
Confidence 455555555554422 11111122346788999999999998762 23333445566666 6666666666554
No 79
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=33.99 E-value=60 Score=21.17 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 041198 51 QETCDYIRSLHREVDDLSDRLSELL 75 (93)
Q Consensus 51 qETC~YIrsLhrEVddLSerLsqLl 75 (93)
|.+..-|..|+.||++|-+.-..|-
T Consensus 16 q~avdtI~lLqmEieELKekN~~L~ 40 (81)
T 2jee_A 16 QQAIDTITLLQMEIEELKEKNNSLS 40 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777777777766655543
No 80
>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*
Probab=33.50 E-value=24 Score=22.91 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=15.4
Q ss_pred CCCcHhHHHHHHHHHHHh
Q 041198 15 SRISYDQIGDLVSKLQQL 32 (93)
Q Consensus 15 srisddqI~dLvsKLQ~L 32 (93)
..+||+||.+|+..|+.|
T Consensus 172 ~~Ls~~ei~~l~~Yl~sl 189 (190)
T 1m70_A 172 AKLSNKDIEALSSYIQGL 189 (190)
T ss_dssp TTCCHHHHHHHHHHHHTC
T ss_pred HhCCHHHHHHHHHHHHhC
Confidence 468999999999998764
No 81
>1ccr_A Cytochrome C; electron transport(cytochrome); HET: M3L HEM; 1.50A {Oryza sativa} SCOP: a.3.1.1
Probab=33.36 E-value=29 Score=20.93 Aligned_cols=16 Identities=25% Similarity=0.302 Sum_probs=13.5
Q ss_pred CcHhHHHHHHHHHHHh
Q 041198 17 ISYDQIGDLVSKLQQL 32 (93)
Q Consensus 17 isddqI~dLvsKLQ~L 32 (93)
+||+||.+|+..|..|
T Consensus 95 ls~~ei~~l~aYl~~l 110 (112)
T 1ccr_A 95 XKPQERADLISYLKEA 110 (112)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 4899999999888765
No 82
>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus}
Probab=33.15 E-value=31 Score=20.96 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=16.7
Q ss_pred CCCcHhHHHHHHHHHHHhch
Q 041198 15 SRISYDQIGDLVSKLQQLIP 34 (93)
Q Consensus 15 srisddqI~dLvsKLQ~LLP 34 (93)
..+||+||.+|+..|..|=|
T Consensus 103 ~~Ls~~ei~~l~~Yl~~l~~ 122 (124)
T 3cp5_A 103 MALSEEQARAILEYLRQVAE 122 (124)
T ss_dssp CCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC
Confidence 46999999999999987643
No 83
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=32.82 E-value=44 Score=17.90 Aligned_cols=17 Identities=35% Similarity=0.710 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041198 50 LQETCDYIRSLHREVDD 66 (93)
Q Consensus 50 LqETC~YIrsLhrEVdd 66 (93)
|-|+-.|+..|||.+++
T Consensus 6 liearkyleqlhrklkn 22 (26)
T 1xkm_B 6 LIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 56888999999998764
No 84
>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1
Probab=32.70 E-value=34 Score=20.82 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=16.2
Q ss_pred CCcHhHHHHHHHHHHHhch
Q 041198 16 RISYDQIGDLVSKLQQLIP 34 (93)
Q Consensus 16 risddqI~dLvsKLQ~LLP 34 (93)
.+|++||.+++..|..+-+
T Consensus 104 ~Ls~~ei~~l~~Yl~~l~~ 122 (129)
T 1f1c_A 104 NISEDDLYNVAGYILLQPK 122 (129)
T ss_dssp SCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCc
Confidence 6999999999999987643
No 85
>2wvq_A Small S protein; prion-binding protein, prion, prion regulatory domain, heter incompatibility, prion- binding protein; 2.00A {Podospora anserina} PDB: 2wvn_A 2wvo_A
Probab=32.68 E-value=35 Score=24.79 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHhchhhh
Q 041198 20 DQIGDLVSKLQQLIPELR 37 (93)
Q Consensus 20 dqI~dLvsKLQ~LLP~~~ 37 (93)
++|.+++..|-.|+|...
T Consensus 165 ~~i~~lvd~L~~L~p~~~ 182 (225)
T 2wvq_A 165 DQVARFVDELEKAFPIEA 182 (225)
T ss_dssp HHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHCCcHH
Confidence 578899999999999865
No 86
>1c52_A Cytochrome-C552; electron transport protein, MAD, thermostability; HET: HEM; 1.28A {Thermus thermophilus} SCOP: a.3.1.1 PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A* 1dt1_A*
Probab=32.63 E-value=55 Score=20.58 Aligned_cols=20 Identities=5% Similarity=0.268 Sum_probs=17.6
Q ss_pred CCcHhHHHHHHHHHHHhchh
Q 041198 16 RISYDQIGDLVSKLQQLIPE 35 (93)
Q Consensus 16 risddqI~dLvsKLQ~LLP~ 35 (93)
.+||+||.+|+..|..+-+.
T Consensus 74 ~Lsd~ei~~l~~Yl~~~~~~ 93 (131)
T 1c52_A 74 QLKDEEIAAVLNHIATAWGD 93 (131)
T ss_dssp TSCHHHHHHHHHHHHHTTST
T ss_pred cCCHHHHHHHHHHHHHHcCC
Confidence 68999999999999988654
No 87
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=32.46 E-value=46 Score=20.01 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC
Q 041198 55 DYIRSLHREVDDLSDRLSELLASID 79 (93)
Q Consensus 55 ~YIrsLhrEVddLSerLsqLl~s~D 79 (93)
.||..|+..|+.|-..|.++-...+
T Consensus 48 ~~~~~Le~rl~~le~~l~~~~~~~~ 72 (96)
T 1pyi_A 48 SYVFFLEDRLAVMMRVLKEYGVDPT 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4999999999999999988755443
No 88
>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4
Probab=31.98 E-value=30 Score=22.34 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=15.2
Q ss_pred CCCcHhHHHHHHHHHHHh
Q 041198 15 SRISYDQIGDLVSKLQQL 32 (93)
Q Consensus 15 srisddqI~dLvsKLQ~L 32 (93)
..+||+||.+|+..|..|
T Consensus 166 ~~Ls~~ei~~l~~yl~sl 183 (183)
T 1h1o_A 166 KNITVAQMKDVAAYLSSL 183 (183)
T ss_dssp TTCCHHHHHHHHHHHHHC
T ss_pred HhCCHHHHHHHHHHHHhC
Confidence 468999999999988764
No 89
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=31.56 E-value=13 Score=24.54 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=11.8
Q ss_pred CCCCCcHhHHHHHHHH
Q 041198 13 GVSRISYDQIGDLVSK 28 (93)
Q Consensus 13 ~asrisddqI~dLvsK 28 (93)
|++.+|++||.+|-.-
T Consensus 1 ga~~Lt~eqi~elk~~ 16 (176)
T 2lhi_A 1 GSSNLTEEQIAEFKEA 16 (176)
T ss_dssp CCCCCCTTGGGHHHHH
T ss_pred CCCcCCHHHHHHHHHH
Confidence 5778899998876443
No 90
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=31.36 E-value=48 Score=19.79 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=29.7
Q ss_pred HhHHHHHHHHHHHhchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 041198 19 YDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVDDLS 68 (93)
Q Consensus 19 ddqI~dLvsKLQ~LLP~~~~r~~~~~SaskvLqETC~YIrsLhrEVddLS 68 (93)
+++..+|=..+++| ..+| .--+..|+++=.-|..|..|||+|+
T Consensus 8 ~~r~~~l~~~l~~L----~~rN---~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 8 ARDIHQLEARIDSL----AARN---SKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56666655444443 3333 1246789999999999999999985
No 91
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=31.33 E-value=49 Score=17.84 Aligned_cols=18 Identities=33% Similarity=0.665 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041198 48 KILQETCDYIRSLHREVD 65 (93)
Q Consensus 48 kvLqETC~YIrsLhrEVd 65 (93)
.+|=|+.+|+.+..||.+
T Consensus 6 q~LLeAAeyLErrEre~E 23 (26)
T 1pd7_B 6 QMLLEAADYLERREREAE 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 478899999999988754
No 92
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=31.08 E-value=51 Score=19.41 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 041198 54 CDYIRSLHREVDDLSDRLSELLASI 78 (93)
Q Consensus 54 C~YIrsLhrEVddLSerLsqLl~s~ 78 (93)
=-|+..|..+|..|..--.+|...+
T Consensus 21 k~~~~~LE~~v~~L~~eN~~L~~~~ 45 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQNKTLIEEL 45 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688888888888888777776543
No 93
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.30 E-value=29 Score=21.57 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=20.5
Q ss_pred CCCCCcHhHHHHHHHHHHHhchhhh
Q 041198 13 GVSRISYDQIGDLVSKLQQLIPELR 37 (93)
Q Consensus 13 ~asrisddqI~dLvsKLQ~LLP~~~ 37 (93)
|...-+..|+...+..+|+++|++.
T Consensus 4 ~~~~~~~~ql~~mv~~V~~mfP~vp 28 (61)
T 2ekf_A 4 GSSGSPDVQLATLAQRVKEVLPHVP 28 (61)
T ss_dssp SSSCCCCCCHHHHHHHHHHHCSSSC
T ss_pred CCCCCccHHHHHHHHHHHHHcCCCC
Confidence 3344567899999999999999984
No 94
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=30.12 E-value=70 Score=19.03 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHH
Q 041198 50 LQETCDYIRSLH---REVDDLSDRLS 72 (93)
Q Consensus 50 LqETC~YIrsLh---rEVddLSerLs 72 (93)
.+|--|||+.|. .|++.|-|.|-
T Consensus 5 vkelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 467778988875 46777777663
No 95
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.98 E-value=36 Score=20.90 Aligned_cols=25 Identities=24% Similarity=0.512 Sum_probs=20.9
Q ss_pred CCCCCcHhHHHHHHHHHHHhchhhh
Q 041198 13 GVSRISYDQIGDLVSKLQQLIPELR 37 (93)
Q Consensus 13 ~asrisddqI~dLvsKLQ~LLP~~~ 37 (93)
|...-++.|+...+..+|+++|++.
T Consensus 4 ~~~~~~~~q~~~mv~~V~~mfP~vp 28 (58)
T 2ejs_A 4 GSSGASNSQLNAMAHQIQEMFPQVP 28 (58)
T ss_dssp CCSSCCCCHHHHHHHHHHHHCCSSC
T ss_pred CcCCcchHHHHHHHHHHHHHcCCCC
Confidence 3445578899999999999999984
No 96
>1xwj_B Talin, metavinculin; cell adhesion/protein binding complex; 2.60A {Gallus gallus} PDB: 1rkc_B
Probab=29.86 E-value=42 Score=17.21 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcC
Q 041198 59 SLHREVDDLSDRLSELLASID 79 (93)
Q Consensus 59 sLhrEVddLSerLsqLl~s~D 79 (93)
-|++-....+|+++++|+.+.
T Consensus 5 el~~~~r~v~ekV~~vlaaLq 25 (26)
T 1xwj_B 5 ELIESARKVSEKVSHVLAALQ 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 466667788999999998764
No 97
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=29.66 E-value=49 Score=21.49 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041198 49 ILQETCDYIRSLHREVDDLSDRLSEL 74 (93)
Q Consensus 49 vLqETC~YIrsLhrEVddLSerLsqL 74 (93)
.-+.+.+||+.=|+|+..+-..+.+|
T Consensus 8 ~a~~~l~~i~eR~~eI~~Ie~~I~eL 33 (109)
T 3hd7_B 8 ISKQALSEIETRHSEIIKLENSIREL 33 (109)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777766665554
No 98
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=28.65 E-value=19 Score=21.10 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041198 55 DYIRSLHREVDDLSDRLSE 73 (93)
Q Consensus 55 ~YIrsLhrEVddLSerLsq 73 (93)
.||..|+..|+.|-..|.+
T Consensus 58 ~~~~~L~~ri~~LE~~l~~ 76 (81)
T 1hwt_C 58 NELKKLRERVKSLEKTLSK 76 (81)
T ss_dssp HHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666555555444443
No 99
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.64 E-value=58 Score=21.93 Aligned_cols=39 Identities=15% Similarity=0.276 Sum_probs=26.4
Q ss_pred cHhHHHHHHHHHHHhchhhhhhccccchHHHHHHHHHHHHHHH
Q 041198 18 SYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSL 60 (93)
Q Consensus 18 sddqI~dLvsKLQ~LLP~~~~r~~~~~SaskvLqETC~YIrsL 60 (93)
+=-+|.+.++|...|=|++-+..+ +++.-...-.|+..|
T Consensus 8 si~~Ie~v~~r~r~l~~ell~~~~----~s~~yl~~k~eLq~L 46 (89)
T 2d9d_A 8 SILKIEKVLKRMREIKNELLQAQN----PSELYLSSKTELQGL 46 (89)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHCSC----TTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcC----chHHHhhhHHHHHHH
Confidence 345899999999999999966552 355555544444443
No 100
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=28.46 E-value=70 Score=19.26 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=29.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 041198 42 DKVSASKILQETCDYIRSLHREVDDLSDRLSELLAS 77 (93)
Q Consensus 42 ~~~SaskvLqETC~YIrsLhrEVddLSerLsqLl~s 77 (93)
.+.+|.+.=+---.|+..|+.+|+.|...-++|-..
T Consensus 17 NreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~e 52 (63)
T 2dgc_A 17 NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777778889999999999999888887654
No 101
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=28.01 E-value=72 Score=21.80 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHhchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 041198 20 DQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVDDLSDRLSELLASID 79 (93)
Q Consensus 20 dqI~dLvsKLQ~LLP~~~~r~~~~~SaskvLqETC~YIrsLhrEVddLSerLsqLl~s~D 79 (93)
..|.++..+++.|.|++..-.+.+.. +|..-|+|-|.+.|=.+|
T Consensus 30 ~~I~~I~~eV~~L~~qV~~f~g~k~d----------------key~~L~E~L~k~LLkLD 73 (111)
T 1uk5_A 30 LKVEAILEKVQGLEQAVDSFEGKKTD----------------KKYLMIEEYLTKELLALD 73 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSCSSS----------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcch----------------HHHHHHHHHHHHHHHHHC
Confidence 56777777777788877544433211 455668888888544443
No 102
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=27.68 E-value=1e+02 Score=20.26 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041198 48 KILQETCDYIRSLHREVDDLSDRLSEL 74 (93)
Q Consensus 48 kvLqETC~YIrsLhrEVddLSerLsqL 74 (93)
+.|.|+..=.+.||.+|+.|-|-++.|
T Consensus 39 ~AL~eaL~EN~~Lh~~ie~l~eEi~~l 65 (83)
T 1uii_A 39 KALYEALKENEKLHKEIEQKDNEIARL 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888888999999999988887654
No 103
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=26.97 E-value=65 Score=18.09 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=10.8
Q ss_pred HhHHHHHHHHHHHhchhh
Q 041198 19 YDQIGDLVSKLQQLIPEL 36 (93)
Q Consensus 19 ddqI~dLvsKLQ~LLP~~ 36 (93)
.+||.+|...+..+.=.+
T Consensus 36 ~dEi~~l~~~~n~m~~~l 53 (114)
T 3zcc_A 36 ADEIGILAKSIERLRRSL 53 (114)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 567766666665555444
No 104
>1qn2_A Cytochrome CH; electron transport; HET: HEC; 2.01A {Methylobacterium extorquens} SCOP: a.3.1.1
Probab=26.21 E-value=42 Score=19.85 Aligned_cols=16 Identities=13% Similarity=0.289 Sum_probs=12.9
Q ss_pred CcHhHHHHHHHHHHHh
Q 041198 17 ISYDQIGDLVSKLQQL 32 (93)
Q Consensus 17 isddqI~dLvsKLQ~L 32 (93)
.+++||.+|+..|..|
T Consensus 84 ~s~~di~~l~aYl~sl 99 (100)
T 1qn2_A 84 SDPKKVDDIIAYLKTK 99 (100)
T ss_dssp CCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhc
Confidence 4799999999888764
No 105
>1i54_A Cytochrome C; zinc-porphyrin, mixed-metal, electron transport; HET: HEM ZNH; 1.50A {Thunnus thynnus} SCOP: a.3.1.1 PDB: 1i55_A* 1lfm_A* 5cyt_R* 3cyt_O* 1cyc_A* 2aiu_A* 2b4z_A* 2ybb_Y* 1akk_A* 1fi7_A* 1fi9_A* 1giw_A* 1i5t_A* 1lc1_A* 1lc2_A* 1m60_A* 1ocd_A* 1u75_B* 2frc_A* 2giw_A* ...
Probab=26.08 E-value=45 Score=19.52 Aligned_cols=17 Identities=29% Similarity=0.296 Sum_probs=13.8
Q ss_pred CCc-HhHHHHHHHHHHHh
Q 041198 16 RIS-YDQIGDLVSKLQQL 32 (93)
Q Consensus 16 ris-ddqI~dLvsKLQ~L 32 (93)
.++ ++||.+|+..|..|
T Consensus 84 ~l~~~~ei~~l~aYl~sl 101 (103)
T 1i54_A 84 GIKKKGERQDLVAYLKSA 101 (103)
T ss_dssp CCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 364 99999999988765
No 106
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=26.04 E-value=48 Score=20.90 Aligned_cols=22 Identities=0% Similarity=0.202 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041198 49 ILQETCDYIRSLHREVDDLSDR 70 (93)
Q Consensus 49 vLqETC~YIrsLhrEVddLSer 70 (93)
+..|+-.-.+.++..++.|...
T Consensus 55 l~~~i~~~a~~ik~~Lk~l~~~ 76 (127)
T 1ez3_A 55 LMSDIKKTANKVRSKLKSIEQS 76 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 107
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=25.90 E-value=1.2e+02 Score=20.48 Aligned_cols=35 Identities=9% Similarity=0.406 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHh
Q 041198 57 IRSLHREVDDLSDRLSELLASIDSNSAEAAIIRSL 91 (93)
Q Consensus 57 IrsLhrEVddLSerLsqLl~s~D~ns~~a~iirsL 91 (93)
+..|..|+.+|.++|.+++..+=....-+++|..+
T Consensus 17 L~~l~~ql~~l~~~l~~l~~~LP~~~em~~LL~~i 51 (147)
T 2rjz_A 17 LEAYKAQMKEMEESFGALLRQLPSDTEVPGLLEDI 51 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 34688999999999999998876555666666554
No 108
>2w9k_A Cytochrome C, cytochrome C555; electron transport, intermembrane space, metal-binding, thioether bond, respiratory chain, trypanosome; HET: M3L HEC; 1.55A {Crithidia fasciculata} PDB: 2yk3_A* 4dy9_A*
Probab=25.83 E-value=38 Score=20.54 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=13.6
Q ss_pred CCcHhHHHHHHHHHHHh
Q 041198 16 RISYDQIGDLVSKLQQL 32 (93)
Q Consensus 16 risddqI~dLvsKLQ~L 32 (93)
.++++||.+|+..|+.|
T Consensus 96 ~ls~~ei~~l~aYl~sl 112 (114)
T 2w9k_A 96 MKKPQERADVIAYLETL 112 (114)
T ss_dssp CCCHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHc
Confidence 46899999999888764
No 109
>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}
Probab=25.79 E-value=45 Score=21.01 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=15.1
Q ss_pred CcHhHHHHHHHHHHHhc
Q 041198 17 ISYDQIGDLVSKLQQLI 33 (93)
Q Consensus 17 isddqI~dLvsKLQ~LL 33 (93)
+||+||.+|+..|+.+=
T Consensus 117 Ls~~ei~~l~ayl~~l~ 133 (146)
T 3o0r_C 117 LSEGQVDDLAEFLKWSS 133 (146)
T ss_dssp CCHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhc
Confidence 89999999999998753
No 110
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.36 E-value=40 Score=19.90 Aligned_cols=16 Identities=44% Similarity=0.325 Sum_probs=13.2
Q ss_pred cHhHHHHHHHHHHHhc
Q 041198 18 SYDQIGDLVSKLQQLI 33 (93)
Q Consensus 18 sddqI~dLvsKLQ~LL 33 (93)
++++|++|=.||..|-
T Consensus 21 te~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 21 VEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5789999999988774
No 111
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=25.29 E-value=1.9e+02 Score=23.26 Aligned_cols=19 Identities=11% Similarity=0.288 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 041198 59 SLHREVDDLSDRLSELLAS 77 (93)
Q Consensus 59 sLhrEVddLSerLsqLl~s 77 (93)
+++..++.|.+.+.+|...
T Consensus 116 ~~~~~i~~l~~~i~~l~~~ 134 (409)
T 1m1j_C 116 MNSNKITQLKQKIAQLESH 134 (409)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3445566666666666553
No 112
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=25.14 E-value=68 Score=20.04 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041198 51 QETCDYIRSLHREVDDLSDRLSEL 74 (93)
Q Consensus 51 qETC~YIrsLhrEVddLSerLsqL 74 (93)
+-.-.||+.|..+|.+|......|
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~~l 48 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHSST 48 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445679999999999988766654
No 113
>2dwf_A Pulmonary surfactant-associated protein B; mini-B, SP-B, surfactant protein B, lipid associated protein, surface active protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 2jou_A
Probab=24.94 E-value=32 Score=19.60 Aligned_cols=13 Identities=31% Similarity=0.669 Sum_probs=11.1
Q ss_pred HHHHHHHHhchhh
Q 041198 24 DLVSKLQQLIPEL 36 (93)
Q Consensus 24 dLvsKLQ~LLP~~ 36 (93)
-|++++|+.+|.-
T Consensus 6 tlikriq~vIPk~ 18 (34)
T 2dwf_A 6 ALIKRIQAMIPKG 18 (34)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHhhcCCc
Confidence 4899999999965
No 114
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=24.89 E-value=43 Score=19.67 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=13.2
Q ss_pred CCcHhHHHHHHHHHH
Q 041198 16 RISYDQIGDLVSKLQ 30 (93)
Q Consensus 16 risddqI~dLvsKLQ 30 (93)
.+||+||.+++..+.
T Consensus 67 ~Lsd~ei~~v~~yi~ 81 (83)
T 1cc5_A 67 DCSDDELKAAIGKMS 81 (83)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 699999999998775
No 115
>3sjl_A Methylamine utilization protein MAUG; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 3sle_A* 3svw_A* 3sxt_A* 3l4o_A* 3pxs_A* 3pxt_A* 3pxw_A* 3l4m_A* 3sws_A* 3orv_A* 3rmz_A* 3rlm_A* 3rn0_A* 3rn1_A*
Probab=24.36 E-value=39 Score=26.77 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=16.9
Q ss_pred CCCcHhHHHHHHHHHHHhc
Q 041198 15 SRISYDQIGDLVSKLQQLI 33 (93)
Q Consensus 15 srisddqI~dLvsKLQ~LL 33 (93)
-.+|++||.+||.+|..|=
T Consensus 332 ~~Lt~~E~~dLVAFLkTLT 350 (373)
T 3sjl_A 332 LMLDDGRVDALVAFLETLT 350 (373)
T ss_dssp CCCCHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 4699999999999999874
No 116
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=24.34 E-value=1.7e+02 Score=19.79 Aligned_cols=19 Identities=11% Similarity=0.102 Sum_probs=14.5
Q ss_pred HhHHHHHHHHHHHhchhhh
Q 041198 19 YDQIGDLVSKLQQLIPELR 37 (93)
Q Consensus 19 ddqI~dLvsKLQ~LLP~~~ 37 (93)
.+++.+-|.+++.|+-...
T Consensus 33 k~EVq~sl~~l~~l~~~w~ 51 (130)
T 4dnd_A 33 RGEVQKAVNTARGLYQRWC 51 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678888888888886653
No 117
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} SCOP: d.370.1.1 PDB: 2d5r_B
Probab=24.28 E-value=80 Score=21.73 Aligned_cols=15 Identities=33% Similarity=0.547 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhh
Q 041198 62 REVDDLSDRLSELLA 76 (93)
Q Consensus 62 rEVddLSerLsqLl~ 76 (93)
+.|+...+.|.++|.
T Consensus 30 ~~v~~F~~~L~~~L~ 44 (130)
T 2z15_A 30 RRVNIFGEELERLLK 44 (130)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 447777777777553
No 118
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=24.22 E-value=79 Score=20.88 Aligned_cols=47 Identities=17% Similarity=0.197 Sum_probs=31.4
Q ss_pred cHhHHHHHHHHHHHhchhhh---hhccccchHHHHHHHHHHHHHHHHHHHH
Q 041198 18 SYDQIGDLVSKLQQLIPELR---SRRSDKVSASKILQETCDYIRSLHREVD 65 (93)
Q Consensus 18 sddqI~dLvsKLQ~LLP~~~---~r~~~~~SaskvLqETC~YIrsLhrEVd 65 (93)
.-++..+-+.||.+++|+.. .--+... ....++++..|++.+..+|.
T Consensus 171 ~~~~~~~sl~~l~~~~~~~~~i~pgHg~~~-~~~~l~~~~~~l~~~~~~~~ 220 (223)
T 1m2x_A 171 YVNDWTQSVHNIQQKFSGAQYVVAGHDDWK-DQRSIQHTLDLINEYQQKQK 220 (223)
T ss_dssp CHHHHHHHHHHHHHHTTTCSEEEESBSCCC-STTHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEeCCCCcC-CHHHHHHHHHHHHHHHHHHh
Confidence 34566677788888877532 1112222 36789999999999998874
No 119
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=24.17 E-value=1.3e+02 Score=19.43 Aligned_cols=29 Identities=24% Similarity=0.356 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041198 48 KILQETCDYIRSLHREVDDLSDRLSELLA 76 (93)
Q Consensus 48 kvLqETC~YIrsLhrEVddLSerLsqLl~ 76 (93)
+.|.|+..=-+.||.+|+.+-+-++.|-.
T Consensus 27 ~AL~eaL~EN~~Lh~~ie~~~eEi~~Lke 55 (79)
T 2zxx_A 27 KALYEALKENEKLHKEIEQKDSEIARLRK 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888889999999988887766544
No 120
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=23.83 E-value=44 Score=17.84 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=12.9
Q ss_pred HhHHHHHHHHHHHhch
Q 041198 19 YDQIGDLVSKLQQLIP 34 (93)
Q Consensus 19 ddqI~dLvsKLQ~LLP 34 (93)
.+|+..||.|+|.-..
T Consensus 7 r~Q~~~lveKvq~a~~ 22 (26)
T 1oeg_A 7 QRQWAGLVEKVQAAVG 22 (26)
T ss_dssp TTHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3689999999997654
No 121
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=23.67 E-value=58 Score=21.32 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=18.8
Q ss_pred CCCCcHhHHHHHHHHHHHhchh
Q 041198 14 VSRISYDQIGDLVSKLQQLIPE 35 (93)
Q Consensus 14 asrisddqI~dLvsKLQ~LLP~ 35 (93)
.|+.+++|+..|+..|-+.|-.
T Consensus 4 ~SKYsd~qvE~ll~eli~VLEK 25 (76)
T 2jr2_A 4 VSKYSNERVEKIIQDLLDVLVK 25 (76)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHh
Confidence 4789999999999999888743
No 122
>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide, oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}
Probab=22.86 E-value=44 Score=25.81 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=17.0
Q ss_pred CCCcHhHHHHHHHHHHHhc
Q 041198 15 SRISYDQIGDLVSKLQQLI 33 (93)
Q Consensus 15 srisddqI~dLvsKLQ~LL 33 (93)
-.+|++||.+||..|+.|=
T Consensus 273 ~~Ls~~E~~~LvaFL~sLt 291 (320)
T 3o5c_A 273 QKLTEKETKEMVAFLNSLT 291 (320)
T ss_dssp CCCCHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHHHHcC
Confidence 4699999999999999883
No 123
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=22.70 E-value=63 Score=20.09 Aligned_cols=22 Identities=9% Similarity=0.185 Sum_probs=19.0
Q ss_pred CCCcHhHHHHHHHHHHHhchhh
Q 041198 15 SRISYDQIGDLVSKLQQLIPEL 36 (93)
Q Consensus 15 srisddqI~dLvsKLQ~LLP~~ 36 (93)
+.++|+|+..++.|.+.++-+-
T Consensus 54 P~l~ee~~~~~vek~~~~i~~~ 75 (77)
T 3zzp_A 54 PNLDQSQLQNEKEIIQRALENY 75 (77)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhc
Confidence 5589999999999999998653
No 124
>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=22.61 E-value=1.4e+02 Score=19.92 Aligned_cols=47 Identities=23% Similarity=0.208 Sum_probs=31.2
Q ss_pred CcHhHHHHHHHHHHHhchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 041198 17 ISYDQIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVDDLSDRLSELLASID 79 (93)
Q Consensus 17 isddqI~dLvsKLQ~LLP~~~~r~~~~~SaskvLqETC~YIrsLhrEVddLSerLsqLl~s~D 79 (93)
-.-..|+++..+++.|.|++..-.+.+. .+|..-|+|-|.+.|=.+|
T Consensus 21 ~~~~kI~~I~~ev~~L~~~V~~f~G~k~----------------dkey~~L~E~L~k~LLkLD 67 (99)
T 1m7k_A 21 PSIKKIIHVLEKVQYLEQEVEEFVGKKT----------------DKAYWLLEEMLTKELLELD 67 (99)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCSCTT----------------SHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCch----------------HHHHHHHHHHHHHHHHHHC
Confidence 3456788888888888888764443321 1466678888888654444
No 125
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=22.56 E-value=25 Score=23.21 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCCcHHHHHHHH
Q 041198 61 HREVDDLSDRLSELLASIDSNSAEAAIIRS 90 (93)
Q Consensus 61 hrEVddLSerLsqLl~s~D~ns~~a~iirs 90 (93)
..|||-|-|++++|.+...-=-.+-.++|.
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888887764322233344444
No 126
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=22.37 E-value=56 Score=18.92 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHhchhhhhhcc-----ccchHHHHHHHHHHH
Q 041198 20 DQIGDLVSKLQQLIPELRSRRS-----DKVSASKILQETCDY 56 (93)
Q Consensus 20 dqI~dLvsKLQ~LLP~~~~r~~-----~~~SaskvLqETC~Y 56 (93)
|.+.+.+.++|+..-..-.|.. .+..|..++|..+..
T Consensus 1 ~~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~ 42 (63)
T 2bl0_A 1 RRIGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRA 42 (63)
T ss_dssp CHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999998887754441 224677888877653
No 127
>2gc4_D Cytochrome C-L; electron transfer, methylamine dehydrogenase, blue copper protein, oxidoreductase, electron transport; HET: TRQ HEM; 1.90A {Paracoccus denitrificans} SCOP: a.3.1.1 PDB: 2gc7_D* 2mta_C* 1mg2_D* 1mg3_D*
Probab=22.36 E-value=62 Score=20.74 Aligned_cols=19 Identities=11% Similarity=0.254 Sum_probs=16.6
Q ss_pred CCCcHhHHHHHHHHHHHhc
Q 041198 15 SRISYDQIGDLVSKLQQLI 33 (93)
Q Consensus 15 srisddqI~dLvsKLQ~LL 33 (93)
..+|++||.+|+..|..+-
T Consensus 106 ~~ls~~ei~~l~~Yl~~l~ 124 (147)
T 2gc4_D 106 GSLTLDEMLRTMAWVRHLY 124 (147)
T ss_dssp TTSCHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 4699999999999999873
No 128
>1ycc_A Cytochrome C; electron transport (cytochrome); HET: M3L HEM; 1.23A {Saccharomyces cerevisiae} SCOP: a.3.1.1 PDB: 1kyo_W* 3cx5_W* 2gb8_B* 2pcc_B* 2b12_B* 2jti_B* 2b11_B* 2b0z_B* 2bcn_B* 1u74_B* 2b10_B* 1yfc_A* 1yic_A* 1nmi_A* 2hv4_A* 2orl_A* 3tyi_A* 1crh_A* 2ycc_A* 1csw_A* ...
Probab=22.26 E-value=58 Score=19.33 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=13.3
Q ss_pred cHhHHHHHHHHHHHh
Q 041198 18 SYDQIGDLVSKLQQL 32 (93)
Q Consensus 18 sddqI~dLvsKLQ~L 32 (93)
+++||.+|+..|..|
T Consensus 92 s~~ei~~l~aYl~sl 106 (108)
T 1ycc_A 92 KEKDRNDLITYLKKA 106 (108)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 799999999998875
No 129
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=22.19 E-value=58 Score=20.12 Aligned_cols=19 Identities=16% Similarity=0.517 Sum_probs=16.9
Q ss_pred HhHHHHHHHHHHHhchhhh
Q 041198 19 YDQIGDLVSKLQQLIPELR 37 (93)
Q Consensus 19 ddqI~dLvsKLQ~LLP~~~ 37 (93)
..|+.+.+..+|+++|++.
T Consensus 14 ~sql~~Mve~V~~mFPqv~ 32 (58)
T 4g3o_A 14 QGQLNAMAHQIQEMFPQVP 32 (58)
T ss_dssp HHHHHHHHHHHHHHCTTSC
T ss_pred hHHHHHHHHHHHHHcCCCC
Confidence 3589999999999999984
No 130
>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*
Probab=22.18 E-value=59 Score=20.38 Aligned_cols=19 Identities=0% Similarity=0.004 Sum_probs=16.2
Q ss_pred CCcHhHHHHHHHHHHHhch
Q 041198 16 RISYDQIGDLVSKLQQLIP 34 (93)
Q Consensus 16 risddqI~dLvsKLQ~LLP 34 (93)
.+||+||.+|+..|..+=+
T Consensus 106 ~Lsd~ei~alaaYl~~~~~ 124 (137)
T 1mz4_A 106 NLTEKDLVAIAGHILVEPK 124 (137)
T ss_dssp TCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccc
Confidence 4999999999999987643
No 131
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha, northeast structural GEN consortium, NESG, structural genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1 PDB: 2qti_A
Probab=21.83 E-value=62 Score=21.34 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=18.8
Q ss_pred CCCCcHhHHHHHHHHHHHhchh
Q 041198 14 VSRISYDQIGDLVSKLQQLIPE 35 (93)
Q Consensus 14 asrisddqI~dLvsKLQ~LLP~ 35 (93)
.|+.+++|+..|+..|-+.|-.
T Consensus 4 ~SKYsd~qvE~ll~eli~VLEK 25 (80)
T 2juw_A 4 QSKYSNTQVESLIAEILVVLEK 25 (80)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHh
Confidence 4789999999999999888743
No 132
>1kdx_A CBP; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Mus musculus} SCOP: a.12.1.1 PDB: 1sb0_A 2agh_B 2kwf_A
Probab=21.79 E-value=1.7e+02 Score=18.83 Aligned_cols=49 Identities=16% Similarity=0.309 Sum_probs=33.4
Q ss_pred CCCcHhHHHHHHHHH-HHhchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHH
Q 041198 15 SRISYDQIGDLVSKL-QQLIPELRSRRSDKVSASKILQETCDYIRSLHREVDDL 67 (93)
Q Consensus 15 srisddqI~dLvsKL-Q~LLP~~~~r~~~~~SaskvLqETC~YIrsLhrEVddL 67 (93)
+.||.+.=+.||-|| +++.|...... -.-.=+..-|.|.+.+..++=+-
T Consensus 8 ~~vt~~lR~hlv~Klv~aI~P~pdp~a----~~d~rm~~l~~yArkvE~~~ye~ 57 (81)
T 1kdx_A 8 EHVTQDLRSHLVHKLVQAIFPTPDPAA----LKDRRMENLVAYAKKVEGDMYES 57 (81)
T ss_dssp GGSCHHHHHHHHHHHHHHHSCCSSGGG----GGSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHcCHHHHHHHHHHHHHHhcCCCChhh----hhhHHHHHHHHHHHHHHHHHHHH
Confidence 459999999999997 67778763211 11123566788888888876443
No 133
>3qtm_A Uncharacterized protein C4B3.07; tetratricopeptide repeat, enhancer of translation terminatio translation; HET: CME; 2.15A {Schizosaccharomyces pombe} PDB: 3qtn_B
Probab=21.64 E-value=60 Score=26.34 Aligned_cols=53 Identities=23% Similarity=0.332 Sum_probs=35.6
Q ss_pred HHHHHHHHhchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041198 24 DLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVDDLSDRLSELLA 76 (93)
Q Consensus 24 dLvsKLQ~LLP~~~~r~~~~~SaskvLqETC~YIrsLhrEVddLSerLsqLl~ 76 (93)
|++-||-.+--++.+---.-.+--|-|||+|+-||--|+==-||++--++.+.
T Consensus 290 e~l~~lAd~kmdlan~~~~Ed~Qdk~l~EA~~~ireAq~~Gv~l~~dy~ef~~ 342 (346)
T 3qtm_A 290 ERLLKLADIKMDLAQIVQDEASQDNYLKEACNAIKEAQGSGVELSPDYVEFVE 342 (346)
T ss_dssp GGHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccChhhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHH
Confidence 34445555544444333334567789999999999999877777777666553
No 134
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=21.60 E-value=67 Score=21.34 Aligned_cols=22 Identities=9% Similarity=0.354 Sum_probs=18.9
Q ss_pred CCCCcHhHHHHHHHHHHHhchh
Q 041198 14 VSRISYDQIGDLVSKLQQLIPE 35 (93)
Q Consensus 14 asrisddqI~dLvsKLQ~LLP~ 35 (93)
.|+.+++|+..|+..|-+.|-.
T Consensus 4 ~SKYsd~qvE~ll~eli~VLEK 25 (83)
T 2jpq_A 4 TSKYTDEQVEKILAEVALVLEK 25 (83)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHh
Confidence 4789999999999999888743
No 135
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: a.284.1.1
Probab=21.50 E-value=65 Score=21.39 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=18.9
Q ss_pred CCCCcHhHHHHHHHHHHHhchh
Q 041198 14 VSRISYDQIGDLVSKLQQLIPE 35 (93)
Q Consensus 14 asrisddqI~dLvsKLQ~LLP~ 35 (93)
.|+.+++|+..|+..|-+.|-.
T Consensus 4 ~SKYsd~qvE~ll~eli~VLEK 25 (83)
T 2jrx_A 4 ISRYSDEQVEQLLAELLNVLEK 25 (83)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHh
Confidence 4789999999999999888753
No 136
>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A {Trypanosoma brucei}
Probab=21.17 E-value=2.4e+02 Score=20.41 Aligned_cols=74 Identities=18% Similarity=0.277 Sum_probs=43.9
Q ss_pred CCCcHhHHHHHHHHHHHh--chhhhhhccccchHHHHHHHHHHHHHHHHHH----------------H--------HHHH
Q 041198 15 SRISYDQIGDLVSKLQQL--IPELRSRRSDKVSASKILQETCDYIRSLHRE----------------V--------DDLS 68 (93)
Q Consensus 15 srisddqI~dLvsKLQ~L--LP~~~~r~~~~~SaskvLqETC~YIrsLhrE----------------V--------ddLS 68 (93)
..++.+||.+++..+... +++...--..-......++....+|+.++.. + +++-
T Consensus 54 ~~~~~~ql~~~~~~~~~~~~~~~~daV~tG~l~s~~~i~~v~~~l~~~k~~~~~~~~~~~vv~DPVm~d~G~~~~~~~~~ 133 (300)
T 3zs7_A 54 HRMSLQEYDELMEGVRANNFLSNYRYILTGYINNVDIIGRIRDTLKEVRELREKEDKKLTFICDPVMGDDGIMYCKKEVL 133 (300)
T ss_dssp EECCHHHHHHHHHHHHHTTCGGGCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEECCCC---------CTHH
T ss_pred CcCCHHHHHHHHHHHHhcCCcccCCEEEECCCCCHHHHHHHHHHHHHHHhhCcCcCCCceEEEccccccCCCeecCHHHH
Confidence 457889999999988753 3344322222224455566666666666422 0 2344
Q ss_pred HHHHHHhhhcCC---CcHHHHHH
Q 041198 69 DRLSELLASIDS---NSAEAAII 88 (93)
Q Consensus 69 erLsqLl~s~D~---ns~~a~ii 88 (93)
+.+.+|+.-.|+ |-.+++.+
T Consensus 134 ~~~~~Ll~~adiitPN~~Ea~~L 156 (300)
T 3zs7_A 134 DAYRELVPLADIVTPNYFEASLL 156 (300)
T ss_dssp HHHHHHGGGCSEECCCHHHHHHH
T ss_pred HHHHHHhhhCCEecCCHHHHHHH
Confidence 566678888885 66676655
No 137
>4aan_A Cytochrome C551 peroxidase; oxidoreductase, multiheme cytochromes, conformational rearra; HET: HEC; 1.22A {Geobacter sulfurreducens} PDB: 4aam_A* 4aal_A* 4aao_A*
Probab=21.17 E-value=47 Score=25.79 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=16.7
Q ss_pred CCCcHhHHHHHHHHHHHhc
Q 041198 15 SRISYDQIGDLVSKLQQLI 33 (93)
Q Consensus 15 srisddqI~dLvsKLQ~LL 33 (93)
-.+|++|+.+||..|..|=
T Consensus 299 ~~Lt~~E~~~LvAFL~tLt 317 (341)
T 4aan_A 299 ISITDADADKIVTFLNTLT 317 (341)
T ss_dssp CCCCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHccC
Confidence 3589999999999999983
No 138
>3oqi_A YVMC, putative uncharacterized protein YVMC; tRNA, rossmann fold, ligase; HET: NHE; 1.70A {Bacillus licheniformis} PDB: 3oqh_A* 3oqj_A* 3s7t_A* 3oqi_B*
Probab=21.10 E-value=1.9e+02 Score=22.18 Aligned_cols=56 Identities=18% Similarity=0.150 Sum_probs=38.3
Q ss_pred CCCCCCcHhHHHHHHHHHHH-------hchhhhhhc------cc-cchHHHHHHHHHHHHHHHHHHHHHH
Q 041198 12 SGVSRISYDQIGDLVSKLQQ-------LIPELRSRR------SD-KVSASKILQETCDYIRSLHREVDDL 67 (93)
Q Consensus 12 ~~asrisddqI~dLvsKLQ~-------LLP~~~~r~------~~-~~SaskvLqETC~YIrsLhrEVddL 67 (93)
++.+.+++|-|..|+-.++. ++|..-.+. .+ .-+..|+-+|.....+...+.++.+
T Consensus 38 pgNsyFs~d~L~~Li~Wa~~~F~~vdVli~D~~~~~~l~A~G~~~~~A~rKArre~~~~r~~i~ral~~~ 107 (257)
T 3oqi_A 38 PFNSRFSEDYIHRLIAWAVREFQSVSVLLAGKEAANLLEALGTPHGKAERKVRKEVSRNRRFAEKALEAH 107 (257)
T ss_dssp TTSTTCCHHHHHHHHHHHHHHCSEEEEEECCTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCHHHHHHHHHHHHccCCceEEEeCCHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 47789999999999999986 566653332 11 2245677777777777776666643
No 139
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics, PSI-2, protein structure initiative; NMR {Haemophilus influenzae} SCOP: a.284.1.1
Probab=20.93 E-value=66 Score=21.24 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=18.7
Q ss_pred CCCCcHhHHHHHHHHHHHhchh
Q 041198 14 VSRISYDQIGDLVSKLQQLIPE 35 (93)
Q Consensus 14 asrisddqI~dLvsKLQ~LLP~ 35 (93)
.|+.+++|+..|+..|-+.|-.
T Consensus 4 ~SKYsd~qvE~ll~eli~VLEK 25 (80)
T 2juz_A 4 HSKYSDAQLSAIVNDMIAVLEK 25 (80)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHh
Confidence 4789999999999999888743
No 140
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=20.82 E-value=1.4e+02 Score=20.25 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=18.6
Q ss_pred HHHHHHHHHHH-H-------HHHHHHHHHHHHHhh
Q 041198 50 LQETCDYIRSL-H-------REVDDLSDRLSELLA 76 (93)
Q Consensus 50 LqETC~YIrsL-h-------rEVddLSerLsqLl~ 76 (93)
++++.+||.+| . +.|+...+.|..+|.
T Consensus 6 I~~av~Fl~~~l~~~~~l~~~~v~~F~~~L~~~L~ 40 (120)
T 3e9v_A 6 IAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALT 40 (120)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 45666666665 2 248899999988664
No 141
>3ce2_A Putative peptidase; structural genomics, unknown function, P protein structure initiative; 2.60A {Chlamydophila abortus}
Probab=20.77 E-value=2.7e+02 Score=22.43 Aligned_cols=65 Identities=15% Similarity=0.154 Sum_probs=43.2
Q ss_pred cHhHHHHHHHHHH------HhchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHH
Q 041198 18 SYDQIGDLVSKLQ------QLIPELRSRRSDKVSASKILQETCDYIRSLHREVDDLSDRLSELLASIDSNSAE 84 (93)
Q Consensus 18 sddqI~dLvsKLQ------~LLP~~~~r~~~~~SaskvLqETC~YIrsLhrEVddLSerLsqLl~s~D~ns~~ 84 (93)
+++.+.+.+.+++ +.++++..-.+.. ..+.-+.+|..-...+.+.++.+. ..+.++.+.|.++++
T Consensus 32 ~~~a~~~~l~~~~~~~~~~~~i~~i~~~~~~~-~~~~~~~~~l~~~e~~~~~l~~~~-~~~~~~~s~dt~d~~ 102 (618)
T 3ce2_A 32 NRKAWKADLDSFGLKTDGSPTWPALQATQYQL-DNSESLLSLLTTLFSIERKLNKLY-VYAHLTHDQDITNQE 102 (618)
T ss_dssp SHHHHHHHHHHTCCC---CCSCSTTCGGGCCT-TCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCTTCHH
T ss_pred CHHHHHHHHHHHhcccccHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHH-HHHhhHhcccCCCHH
Confidence 6788999999999 9999885422221 223346666666666666666665 556677778887653
No 142
>1co6_A Protein (cytochrome C2); electron transport(heme protein); HET: HEM; 1.60A {Blastochloris viridis} SCOP: a.3.1.1 PDB: 1cry_A* 1io3_A*
Probab=20.71 E-value=61 Score=19.35 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=13.8
Q ss_pred cHhHHHHHHHHHHHhch
Q 041198 18 SYDQIGDLVSKLQQLIP 34 (93)
Q Consensus 18 sddqI~dLvsKLQ~LLP 34 (93)
+++||.+|+..|..|=|
T Consensus 86 s~~ei~~l~aYl~sl~~ 102 (107)
T 1co6_A 86 DEQKVSDLIAYIKQFNA 102 (107)
T ss_dssp CHHHHHHHHHHHHTBCT
T ss_pred CHHHHHHHHHHHHHccc
Confidence 78999999988887644
No 143
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=20.66 E-value=84 Score=22.08 Aligned_cols=19 Identities=0% Similarity=0.163 Sum_probs=16.2
Q ss_pred CcHhHHHHHHHHHHHhchh
Q 041198 17 ISYDQIGDLVSKLQQLIPE 35 (93)
Q Consensus 17 isddqI~dLvsKLQ~LLP~ 35 (93)
+++++|..++..|.+.+-+
T Consensus 370 ~~~~~i~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 370 FKEKEMEIVSNYIADILDD 388 (417)
T ss_dssp CCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 6789999999999888744
No 144
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=20.50 E-value=1.3e+02 Score=19.64 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 041198 52 ETCDYIRSLHREVDDLSDRLSELLA 76 (93)
Q Consensus 52 ETC~YIrsLhrEVddLSerLsqLl~ 76 (93)
|+|+=+..|..++|.+=..|-+||+
T Consensus 9 ~~~~~L~~lR~~ID~ID~~il~LL~ 33 (114)
T 3rmi_A 9 KILSELAYLRQSIDNFDITLIHILA 33 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777777777665
No 145
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.43 E-value=1.9e+02 Score=19.03 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041198 21 QIGDLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVDDLSDRLSELL 75 (93)
Q Consensus 21 qI~dLvsKLQ~LLP~~~~r~~~~~SaskvLqETC~YIrsLhrEVddLSerLsqLl 75 (93)
+|+--|+.|+.++-.++..+ +-..--+=|.++..|++.|-+++...-.+|+.+.
T Consensus 25 ~In~~vs~l~r~v~~LGT~k-Dt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~ 78 (130)
T 2dnx_A 25 RISQATAQIKNLMSQLGTKQ-DSSKLQENLQQLQHSTNQLAKETNELLKELGSLP 78 (130)
T ss_dssp HHHHHHHHHHHHHHHHCSSS-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56666788888887665332 3333444466777777777776666666666543
No 146
>1ssz_A Pulmonary surfactant-associated protein B; LUNG surfactant protein, saposin, surface active protein; NMR {Synthetic}
Probab=20.26 E-value=43 Score=18.94 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=11.8
Q ss_pred HHHHHHHHhchhhh
Q 041198 24 DLVSKLQQLIPELR 37 (93)
Q Consensus 24 dLvsKLQ~LLP~~~ 37 (93)
.||+++|+.+|...
T Consensus 6 ~likriqa~ipk~g 19 (34)
T 1ssz_A 6 ALIKRIQAMIPKGG 19 (34)
T ss_dssp HHHHHHHHHCSSSC
T ss_pred HHHHHHHHHccccc
Confidence 58999999999763
No 147
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=20.26 E-value=1.2e+02 Score=20.43 Aligned_cols=16 Identities=13% Similarity=0.399 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhchhh
Q 041198 21 QIGDLVSKLQQLIPEL 36 (93)
Q Consensus 21 qI~dLvsKLQ~LLP~~ 36 (93)
+|.+-|.+|..++-++
T Consensus 47 ~I~~~i~~i~~~v~~l 62 (180)
T 1s94_A 47 EIRAMIDKISDNVDAV 62 (180)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 148
>3oqv_A ALBC; rossman fold, cyclodipeptide synthase, aminoacyl-tRNA, prote binding; 1.90A {Streptomyces noursei}
Probab=20.24 E-value=1.4e+02 Score=22.65 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=39.9
Q ss_pred CCCCCCcHhHHHHHHHHHHH-------hchhhhhhc-----c-c-cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 041198 12 SGVSRISYDQIGDLVSKLQQ-------LIPELRSRR-----S-D-KVSASKILQETCDYIRSLHREVDDLSD 69 (93)
Q Consensus 12 ~~asrisddqI~dLvsKLQ~-------LLP~~~~r~-----~-~-~~SaskvLqETC~YIrsLhrEVddLSe 69 (93)
.+.+.+++|-|..|+-.++. ++|....+. + + .-+..|+-+|.+...+...+.+++++-
T Consensus 38 pgNsyFs~drl~~li~Wa~~~F~~vdVli~D~~~~~tl~A~G~~~~~A~rKarr~~~~~r~~i~ral~~~~~ 109 (247)
T 3oqv_A 38 AGNSYFSQKNTVMLLQWAGQRFERTDVVYVDTHIDEMLIADGRSAQEAERSVKRTLKDLRRRLRRSLESVGD 109 (247)
T ss_dssp SSCTTCCHHHHHHHHHHHHHHEEEEEEEEECSSHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCcccCHHHHHHHHHHHHccCCceEEEeCChHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 36789999999999999986 556553322 1 1 125567777777777777777666543
No 149
>3msv_A Nuclear import adaptor, NRO1; helix repeats, heat repeats, protein binding; 2.18A {Schizosaccharomyces pombe}
Probab=20.12 E-value=76 Score=26.13 Aligned_cols=53 Identities=23% Similarity=0.332 Sum_probs=36.1
Q ss_pred HHHHHHHHhchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041198 24 DLVSKLQQLIPELRSRRSDKVSASKILQETCDYIRSLHREVDDLSDRLSELLA 76 (93)
Q Consensus 24 dLvsKLQ~LLP~~~~r~~~~~SaskvLqETC~YIrsLhrEVddLSerLsqLl~ 76 (93)
|++-+|-.+--++.+---.-.+--|-|||+|+-||--|+==-+|++--++.+.
T Consensus 337 e~l~~lAd~kmdlan~~~~Ed~Qdk~l~EA~~~ireAq~~Gv~l~~dy~ef~~ 389 (393)
T 3msv_A 337 ERLLKLADIKMDLAQIVQDEASQDNYLKEACNAIKEAQGSGVELSPDYVEFVE 389 (393)
T ss_dssp THHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHH
Confidence 45555555555554433344567789999999999999877777776666553
No 150
>1xg0_B Phycoerythrin alpha-2 chain; light-harvesting protein, cryptophyte, photosynthesis; HET: LYZ DBV PEB; 0.97A {Rhodomonas SP} SCOP: d.184.1.1 PDB: 1qgw_B* 1xf6_B*
Probab=20.05 E-value=54 Score=21.05 Aligned_cols=14 Identities=14% Similarity=0.159 Sum_probs=11.7
Q ss_pred chHHHHHHHHHHHH
Q 041198 44 VSASKILQETCDYI 57 (93)
Q Consensus 44 ~SaskvLqETC~YI 57 (93)
.-|+++|||+..|+
T Consensus 52 ~~Aa~~lqe~l~~l 65 (67)
T 1xg0_B 52 GTAEGVLATSLAKM 65 (67)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 36899999998875
No 151
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=20.02 E-value=91 Score=20.34 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 041198 57 IRSLHREVDDLSDRLSELLA 76 (93)
Q Consensus 57 IrsLhrEVddLSerLsqLl~ 76 (93)
++.|+.++++|..+|+++-.
T Consensus 33 l~~L~~~l~~Lq~~l~~l~~ 52 (177)
T 1pwb_A 33 VEALQGQVQHLQAAFSQYKK 52 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 66777888888888887643
Done!