BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041201
(94 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RQ7|A Chain A, Solution Structure Of The Epsilon Subunit Chimera
Combining The N-Terminal Beta-Sandwich Domain From T.
Elongatus Bp-1 F1 And The C-Terminal Alpha-Helical
Domain From Spinach Chloroplast F1
Length = 134
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 17/105 (16%)
Query: 4 DKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSY----- 58
+++I+PSTTG + +L HA ++ L++GV+ V + E + + GFA + N
Sbjct: 20 EEVILPSTTGQLGILSNHAPLLTALETGVMRVRQDREWVAIALMGGFAEVENNEVTILVN 79
Query: 59 -AE----IIAVEAPST------NLEKAE-AQIGVDVHVALNSALT 91
AE I EA T NL KAE A+ ++ ++AL A T
Sbjct: 80 GAERGDTIDPQEAQQTLEIAEANLRKAEGARQKIEANLALRRART 124
>pdb|2W6I|H Chain H, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|H Chain H, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6H|H Chain H, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 168
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 3 IDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVH-EGNEVIKYFISSGFALIHTNSYAEI 61
+ ++ +P+ TG +L H + VL+ G++ VH E KYF+SSG ++ +S ++
Sbjct: 55 VRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSSVQL 114
Query: 62 IAVE----------APSTNLEKAEAQI 78
+A E A NLEKA++++
Sbjct: 115 LAEEAVTLDMLDLGAAKANLEKAQSEL 141
>pdb|2XND|H Chain H, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 131
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 3 IDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVH-EGNEVIKYFISSGFALIHTNSYAEI 61
+ ++ +P+ TG +L H + VL+ G++ VH E KYF+SSG ++ +S ++
Sbjct: 19 VRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSSVQL 78
Query: 62 IAVE----------APSTNLEKAEAQI 78
+A E A NLEKA++++
Sbjct: 79 LAEEAVTLDMLDLGAAKANLEKAQSEL 105
>pdb|1E79|H Chain H, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8E|H Chain H, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|2CK3|H Chain H, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|H Chain H, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2V7Q|H Chain H, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|H Chain H, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|Q Chain Q, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|4ASU|H Chain H, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 146
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 3 IDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVH-EGNEVIKYFISSGFALIHTNSYAEI 61
+ ++ +P+ TG +L H + VL+ G++ VH E KYF+SSG ++ +S ++
Sbjct: 33 VRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSSVQL 92
Query: 62 IAVE----------APSTNLEKAEAQI 78
+A E A NLEKA++++
Sbjct: 93 LAEEAVTLDMLDLGAAKANLEKAQSEL 119
>pdb|3OE7|H Chain H, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|Q Chain Q, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|Z Chain Z, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
Length = 137
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYAEI 61
E+ ++ +P+ +G + VL H + L GV+ V EG+ K+FIS GFA + +S +
Sbjct: 25 EVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPDSQLCV 84
Query: 62 IAVEA 66
A+EA
Sbjct: 85 TAIEA 89
>pdb|2HLD|H Chain H, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|Q Chain Q, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|Z Chain Z, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|H Chain H, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|Q Chain Q, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|Z Chain Z, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|H Chain H, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp
Synthase
pdb|3OEE|H Chain H, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|Q Chain Q, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|Z Chain Z, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEH|H Chain H, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|Q Chain Q, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|Z Chain Z, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OFN|H Chain H, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|Q Chain Q, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3ZRY|H Chain H, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|H Chain H, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|R Chain R, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 138
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYAEI 61
E+ ++ +P+ +G + VL H + L GV+ V EG+ K+FIS GFA + +S +
Sbjct: 26 EVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPDSQLCV 85
Query: 62 IAVEA 66
A+EA
Sbjct: 86 TAIEA 90
>pdb|2XOK|H Chain H, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 160
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYAEI 61
E+ ++ +P+ +G + VL H + L GV+ V EG+ K+FIS GFA + +S +
Sbjct: 48 EVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPDSQLCV 107
Query: 62 IAVEA 66
A+EA
Sbjct: 108 TAIEA 112
>pdb|4B2Q|H Chain H, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|HH Chain h, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 132
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYAEI 61
E+ ++ +P+ +G + VL H + L GV+ V EG+ K+FIS GFA + +S +
Sbjct: 20 EVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPDSQLCV 79
Query: 62 IAVEA 66
A+EA
Sbjct: 80 TAIEA 84
>pdb|2RQ6|A Chain A, Solution Structure Of The Epsilon Subunit Of The
F1-Atpase From Thermosynechococcus Elongatus Bp-1
Length = 138
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 4 DKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNS 57
+++I+PSTTG + +L HA ++ L++GV+ V + E + + GFA + N
Sbjct: 20 EEVILPSTTGQLGILSNHAPLLTALETGVMRVRQDREWVAIALMGGFAEVENNE 73
>pdb|1BSH|A Chain A, Solution Structure Of The Epsilon Subunit Of The F1-
Atpsynthase From Escherichia Coli And Orientation Of
The Subunit Relative To The Beta Subunits Of The
Complex
pdb|1BSN|A Chain A, Solution Structure Of The Epsilon Subunit Of The F1-
Atpsynthase From Escherichia Coli And Orientation Of
The Subunit Relative To The Beta Subunits Of The
Complex
pdb|1FS0|E Chain E, Complex Of GammaEPSILON ATP SYNTHASE FROM E.COLI
pdb|3OAA|H Chain H, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|P Chain P, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|X Chain X, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|FF Chain f, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 138
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 3 IDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSV--HEGNEVIKYF 45
++KI + + G + + PGHA ++ +K G++ + G+E Y
Sbjct: 20 VEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYL 64
>pdb|1QO1|J Chain J, Molecular Architecture Of The Rotary Motor In Atp
Synthase From Yeast Mitochondria
pdb|1AQT|A Chain A, Epsilon Subunit Of F1f0-Atp Synthase From Escherichia
Coli
Length = 138
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 3 IDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSV--HEGNEVIKYF 45
++KI + + G + + PGHA ++ +K G++ + G+E Y
Sbjct: 20 VEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYL 64
>pdb|2E5Y|A Chain A, Epsilon Subunit And Atp Complex Of F1f0-Atp Synthase From
The Thermophilic Bacillus Ps3
pdb|2E5Y|B Chain B, Epsilon Subunit And Atp Complex Of F1f0-Atp Synthase From
The Thermophilic Bacillus Ps3
Length = 133
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNS---- 57
+++ + + + +G + +LPGH ++A L+ + +G + +S GF + +
Sbjct: 19 DVEMVSVKAKSGELGILPGHIPLVAPLEISAARLKKGGKTQYIAVSGGFLEVRPDKVTIL 78
Query: 58 -----YAEIIAVEAPSTNLEKAEAQI 78
AE I V E+AE ++
Sbjct: 79 AQAAERAEDIDVLRAKAAKERAERRL 104
>pdb|2QE7|H Chain H, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 135
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNS 57
E D +I G + V+ GH ++ LK+ + + +G++ +S GF + +
Sbjct: 19 EADIVIARGVEGELGVMAGHIPLVTPLKTAPVRIKQGDKETLIAVSGGFLEVRPDK 74
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 17 VLPGHASIIAVLKSG--VLSVHEGNEVIKYFISSGFALIHTNSY 58
V P + +A +G +++ + +VI Y +++ F L HTNS+
Sbjct: 489 VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSW 532
>pdb|3H0L|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 17 VLPGH-ASIIAVLKSGVLSVHEGNEVIKYFISSG 49
V P H A ++ ++K V+S G EVIK + +G
Sbjct: 367 VKPEHLAELVKLIKEKVISTKIGKEVIKEMVETG 400
>pdb|3E0V|A Chain A, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0V|B Chain B, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0V|C Chain C, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0V|D Chain D, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0V|E Chain E, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0V|F Chain F, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana In Complex With Sulphate Ions
pdb|3E0W|A Chain A, Crystal Structure Of Pyruvate Kinase From Leishmania
Mexicana
Length = 539
Score = 25.4 bits (54), Expect = 9.4, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 22 ASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTN-SYAEIIAVEAPSTNLEKAEAQIGV 80
A II + SV E +K I SG ++ N S+ + N+ +A A++GV
Sbjct: 62 ARIICTIGPSTQSV----EALKGLIQSGMSVARMNFSHGSHEYHQTTINNVRQAAAELGV 117
Query: 81 DVHVALNS 88
++ +AL++
Sbjct: 118 NIAIALDT 125
>pdb|3KM3|A Chain A, Crystal Structure Of Eoxycytidine Triphosphate Deaminase
From Anaplasma Phagocytophilum At 2.1a Resolution
pdb|3KM3|B Chain B, Crystal Structure Of Eoxycytidine Triphosphate Deaminase
From Anaplasma Phagocytophilum At 2.1a Resolution
Length = 206
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 13 GLMSVLPGHASIIAVLKSGVLSV----HEGNEVIKYFISS 48
G MSV+P H LK G++S EG V+ Y +SS
Sbjct: 20 GSMSVMPDHWIKERALKDGMISPFVDHKEGTGVLSYGLSS 59
>pdb|3QM3|A Chain A, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
pdb|3QM3|B Chain B, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
pdb|3QM3|C Chain C, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
pdb|3QM3|D Chain D, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
pdb|3QM3|E Chain E, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
pdb|3QM3|F Chain F, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
pdb|3QM3|G Chain G, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
pdb|3QM3|H Chain H, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
Length = 357
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 24 IIAVLKSGVLSVHEGNEVIKYFISSGFALIHTN 56
++ ++K+GV+S E N++ Y + GFA+ N
Sbjct: 6 VLDIVKAGVISGDELNKIYDYAKAEGFAIPAVN 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,453,507
Number of Sequences: 62578
Number of extensions: 80570
Number of successful extensions: 248
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 229
Number of HSP's gapped (non-prelim): 21
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)