BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041201
(94 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q40089|ATP4_IPOBA ATP synthase subunit delta', mitochondrial OS=Ipomoea batatas PE=1
SV=1
Length = 200
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 78/115 (67%), Gaps = 24/115 (20%)
Query: 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYAEI 61
E+D +IIP+TTG M VLPGH + IA LK GV+SVHEGN+V KYF+S GFA IH NS+A+I
Sbjct: 86 EVDMVIIPATTGQMGVLPGHVATIAELKPGVMSVHEGNDVSKYFVSGGFAFIHANSFADI 145
Query: 62 IAVEA------------------------PSTNLEKAEAQIGVDVHVALNSALTG 92
IAVEA ST++EKAEAQIGVDVH ALN+ALTG
Sbjct: 146 IAVEAVPLDRIDANLVQKGLAEFTQKLNTASTDVEKAEAQIGVDVHSALNAALTG 200
>sp|Q96252|ATP4_ARATH ATP synthase subunit delta', mitochondrial OS=Arabidopsis thaliana
GN=At5g47030 PE=1 SV=1
Length = 203
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/115 (53%), Positives = 77/115 (66%), Gaps = 24/115 (20%)
Query: 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYAEI 61
E+D +IIP++TG M VLPGH IA LK G++SVHEG +V KYF+SSGFA +H NS A+I
Sbjct: 89 EVDMVIIPASTGQMGVLPGHVPTIAELKPGIMSVHEGTDVKKYFLSSGFAFLHANSVADI 148
Query: 62 IAVEA-------PS-----------------TNLEKAEAQIGVDVHVALNSALTG 92
IAVEA PS T+LEKAEAQIGV+VH A+N+AL+G
Sbjct: 149 IAVEAVPLDHIDPSQVQKGLAEFQQKLASATTDLEKAEAQIGVEVHSAINAALSG 203
>sp|Q41000|ATP4_PEA ATP synthase subunit delta', mitochondrial OS=Pisum sativum PE=3
SV=1
Length = 197
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 72/115 (62%), Gaps = 24/115 (20%)
Query: 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYAEI 61
E+D +IIP+TTG M VLPGH + IA LK GVL+V EG + KYF+SSGF IH NS A+I
Sbjct: 83 EVDSVIIPATTGEMGVLPGHVATIAELKPGVLTVQEGTDTTKYFVSSGFRFIHANSVADI 142
Query: 62 IAVEA------------------------PSTNLEKAEAQIGVDVHVALNSALTG 92
IAVEA +T+LEK EAQIG+DV ALNSALTG
Sbjct: 143 IAVEAVPVNQLDRDLVQKGLQEFTQKLNSATTDLEKREAQIGIDVDSALNSALTG 197
>sp|A5GV56|ATPE_SYNR3 ATP synthase epsilon chain OS=Synechococcus sp. (strain RCC307)
GN=atpC PE=3 SV=1
Length = 135
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYAEI 61
+ D++I+PSTTG + VLPGH S++ L GVL + +GN+ + GFA + + + +
Sbjct: 18 QADEVILPSTTGQLGVLPGHVSLLTALDVGVLRMRDGNQWTAIALMGGFAEVDDDEVSVL 77
Query: 62 IAVEAPSTNLEKAEAQ 77
+ P++ + EAQ
Sbjct: 78 VNAAEPASGINAEEAQ 93
>sp|P0A2Z9|ATPE_SYNP6 ATP synthase epsilon chain OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=atpC PE=3 SV=1
Length = 137
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 5 KIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYAEII-- 62
++I+PSTTG + +LPGHA +++ L +GVL V E + + GFA + N ++
Sbjct: 21 EVILPSTTGQLGILPGHAPLLSALDTGVLRVRADKEWLAIAVLGGFAEVENNEVTVLVNA 80
Query: 63 AVEAPSTNLEKAEA 76
A +LE+A A
Sbjct: 81 AERGDKIDLEEARA 94
>sp|P0A2Z8|ATPE_SYNE7 ATP synthase epsilon chain OS=Synechococcus elongatus (strain PCC
7942) GN=atpC PE=3 SV=1
Length = 137
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 5 KIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYAEII-- 62
++I+PSTTG + +LPGHA +++ L +GVL V E + + GFA + N ++
Sbjct: 21 EVILPSTTGQLGILPGHAPLLSALDTGVLRVRADKEWLAIAVLGGFAEVENNEVTVLVNA 80
Query: 63 AVEAPSTNLEKAEA 76
A +LE+A A
Sbjct: 81 AERGDKIDLEEARA 94
>sp|A2C4I5|ATPE_PROM1 ATP synthase epsilon chain OS=Prochlorococcus marinus (strain
NATL1A) GN=atpC PE=3 SV=1
Length = 135
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 4 DKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYAEIIA 63
D+II+PSTTGL+ VLPGH S++ + GVL V + ++ GFA + +N ++
Sbjct: 20 DEIILPSTTGLLGVLPGHISMVTAIDFGVLRVLKNGNWDSIALTGGFAEVESNEVTVLVN 79
Query: 64 VEAPSTNLE--KAEAQI 78
N++ KAEA++
Sbjct: 80 KAEMGKNIDSGKAEAEL 96
>sp|Q46J67|ATPE_PROMT ATP synthase epsilon chain OS=Prochlorococcus marinus (strain
NATL2A) GN=atpC PE=3 SV=1
Length = 135
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 4 DKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYAEIIA 63
D+II+PSTTGL+ VLPGH S++ + GVL V + ++ GFA + +N ++
Sbjct: 20 DEIILPSTTGLLGVLPGHISMVTAIDFGVLRVLKNGNWDSIALTGGFAEVESNEVTVLVN 79
Query: 64 VEAPSTNLE--KAEAQI 78
N++ KAEA++
Sbjct: 80 KAEMGKNIDSGKAEAEL 96
>sp|A4J998|ATPE_DESRM ATP synthase epsilon chain OS=Desulfotomaculum reducens (strain
MI-1) GN=atpC PE=3 SV=1
Length = 132
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 17/107 (15%)
Query: 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGF---------AL 52
EID ++ P G + +LP HA ++ LK G L V +G + K +S GF L
Sbjct: 20 EIDFVVAPGADGELGILPEHAPLVTALKVGTLRVQQGGKFFKVAVSGGFMEVKNSRIVVL 79
Query: 53 IHTNSYAEIIAVEAPSTNLEKAEAQIG-----VDVH---VALNSALT 91
T A+ I VE ++AE ++ +DVH +AL+ A+
Sbjct: 80 ADTAERADQIDVERAKAAKQRAEQRLNSKGSEIDVHRAEIALHKAIN 126
>sp|B8HP54|ATPE_CYAP4 ATP synthase epsilon chain OS=Cyanothece sp. (strain PCC 7425 /
ATCC 29141) GN=atpC PE=3 SV=1
Length = 138
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 4 DKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTN 56
+++I+PSTTG + +L GHA ++ L++GV+ V G E + + GFA + N
Sbjct: 20 EEVILPSTTGQLGILSGHAPLLTALETGVMRVRSGKEWLPIALMGGFAEVENN 72
>sp|Q92196|ATPD_AGABI ATP synthase subunit delta, mitochondrial OS=Agaricus bisporus
GN=atpD PE=2 SV=1
Length = 162
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 24/114 (21%)
Query: 1 MEIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSY-- 58
++ ++ IP+ +G M +L H I L+ GV+ V E + K+F+S GFA +H N+
Sbjct: 47 QDVVQVNIPAESGDMGILSSHVPSIEPLRPGVVEVVEDSGSQKWFVSGGFATVHPNNRLT 106
Query: 59 --------AEIIAVEAPSTNLEKA--------------EAQIGVDVHVALNSAL 90
E ++EA NL++A EAQI +V+ AL AL
Sbjct: 107 INVVEAAPLEDFSIEAIRANLQEANKVAAGSGSEADKMEAQIEAEVYEALQHAL 160
>sp|Q757N0|ATPD_ASHGO ATP synthase subunit delta, mitochondrial OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=ATP16 PE=3 SV=1
Length = 158
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 3 IDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYAEII 62
+ ++ +P TG + +L H I+ L GV+ V EG+E K+F+S GFA + +S I
Sbjct: 47 VKQVNLPVKTGQIGILANHVPIVEQLVPGVVEVLEGSESKKFFVSGGFATVQPDSTLSIT 106
Query: 63 AVEA 66
+VEA
Sbjct: 107 SVEA 110
>sp|P35434|ATPD_RAT ATP synthase subunit delta, mitochondrial OS=Rattus norvegicus
GN=Atp5d PE=1 SV=2
Length = 168
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 3 IDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVH-EGNEVIKYFISSGFALIHTNSYAEI 61
+ ++ +P+ TG +L H + VL+ G++ VH E KYF+SSG ++ +S ++
Sbjct: 55 VRQVDVPTLTGAFGILASHVPTLQVLRPGLVMVHAEDGTTTKYFVSSGSVTVNADSSVQL 114
Query: 62 IAVE----------APSTNLEKAEAQI 78
+A E A NLEKA++++
Sbjct: 115 LAEEVVTLDMLDLGAARANLEKAQSEL 141
>sp|P50010|ATPE_PRODI ATP synthase epsilon chain OS=Prochloron didemni GN=atpC PE=3 SV=1
Length = 136
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 3 IDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSY---- 58
+++I++PSTTG + VL GHA ++ L +GV+ V G + + GFA + N
Sbjct: 19 VEEIVLPSTTGQVGVLTGHAPLLTALDTGVMRVRPGKDWQAIALMGGFAEVENNEVKVLV 78
Query: 59 --AEI---IAVEAPSTNLEKAEAQI 78
AE+ I E T ++AE +
Sbjct: 79 NGAEVGDSIDKETARTEFQQAEQNL 103
>sp|Q9D3D9|ATPD_MOUSE ATP synthase subunit delta, mitochondrial OS=Mus musculus GN=Atp5d
PE=1 SV=1
Length = 168
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 3 IDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVH-EGNEVIKYFISSGFALIHTNSYAEI 61
+ ++ +P+ TG +L H + VL+ G++ VH E KYF+SSG ++ +S ++
Sbjct: 55 VKQVDVPTLTGAFGILASHVPTLQVLRPGLVVVHTEDGTTTKYFVSSGSVTVNADSSVQL 114
Query: 62 IAVE----------APSTNLEKAEAQI 78
+A E A NLEKA++++
Sbjct: 115 LAEEAVTLDMLDLGAARANLEKAQSEL 141
>sp|Q8F2J6|ATPE_LEPIN ATP synthase epsilon chain OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=atpC
PE=3 SV=1
Length = 127
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYA-- 59
E+D +I+P + G +LP HA ++A L G+L + +G ++ + GF I NS +
Sbjct: 21 EVDSLIVPGSEGFFGILPNHAPLVATLGIGILEIRKGEKLKVLSVEGGFVEIKDNSISIL 80
Query: 60 -------EIIAVEAPSTNLEKAE 75
E I +E NL +AE
Sbjct: 81 TDHGALKEDIDLEVEKKNLAEAE 103
>sp|Q72SX8|ATPE_LEPIC ATP synthase epsilon chain OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=atpC PE=3 SV=1
Length = 127
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYA-- 59
E+D +I+P + G +LP HA ++A L G+L + +G ++ + GF I NS +
Sbjct: 21 EVDSLIVPGSEGFFGILPNHAPLVATLGIGILEIRKGEKLKVLSVEGGFVEIKDNSISIL 80
Query: 60 -------EIIAVEAPSTNLEKAE 75
E I +E NL +AE
Sbjct: 81 TDHGALKEDIDLEVEKKNLAEAE 103
>sp|P05630|ATPD_BOVIN ATP synthase subunit delta, mitochondrial OS=Bos taurus GN=ATP5D
PE=1 SV=2
Length = 168
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 3 IDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVH-EGNEVIKYFISSGFALIHTNSYAEI 61
+ ++ +P+ TG +L H + VL+ G++ VH E KYF+SSG ++ +S ++
Sbjct: 55 VRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSSVQL 114
Query: 62 IAVE----------APSTNLEKAEAQI 78
+A E A NLEKA++++
Sbjct: 115 LAEEAVTLDMLDLGAAKANLEKAQSEL 141
>sp|P30049|ATPD_HUMAN ATP synthase subunit delta, mitochondrial OS=Homo sapiens GN=ATP5D
PE=1 SV=2
Length = 168
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 3 IDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVH-EGNEVIKYFISSGFALIHTNSYAEI 61
+ ++ +P+ TG +L H + VL+ G++ VH E KYF+SSG ++ +S ++
Sbjct: 55 VRQVDVPTLTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSIAVNADSSVQL 114
Query: 62 IAVE----------APSTNLEKAEAQI 78
+A E A NLEKA+A++
Sbjct: 115 LAEEAVTLDMLDLGAAKANLEKAQAEL 141
>sp|Q12165|ATPD_YEAST ATP synthase subunit delta, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ATP16 PE=1
SV=1
Length = 160
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYAEI 61
E+ ++ +P+ +G + VL H + L GV+ V EG+ K+FIS GFA + +S +
Sbjct: 48 EVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPDSQLCV 107
Query: 62 IAVEA 66
A+EA
Sbjct: 108 TAIEA 112
>sp|Q0BQE9|ATPE_GRABC ATP synthase epsilon chain OS=Granulibacter bethesdensis (strain
ATCC BAA-1260 / CGDNIH1) GN=atpC PE=3 SV=1
Length = 135
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 3 IDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVI-KYFISSGFALI-------- 53
+D ++IP+ G + VLPGHA +I +L+ G + +++ +V + +++ GFA I
Sbjct: 20 VDMVVIPAAEGELGVLPGHAPMIVLLQGGTIRLYQNGQVTDRLYVAGGFAEITPERCTVL 79
Query: 54 --HTNSYAEIIAVEAPSTNLEKAEA 76
AEI A EA L AEA
Sbjct: 80 ADQARPVAEISATEA-EKRLADAEA 103
>sp|Q0I7U0|ATPE_SYNS3 ATP synthase epsilon chain OS=Synechococcus sp. (strain CC9311)
GN=atpC PE=3 SV=1
Length = 135
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 4 DKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTN 56
D++I+PSTTG + +LPGH S++A L GVL V + + GFA + ++
Sbjct: 20 DEVILPSTTGQVGILPGHVSLLAALDVGVLRVRTNSNWQSIALMGGFAEVESD 72
>sp|Q10Z37|ATPE_TRIEI ATP synthase epsilon chain OS=Trichodesmium erythraeum (strain
IMS101) GN=atpC PE=3 SV=1
Length = 137
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYAEI 61
E ++I+PSTTG + +L GHA ++ L +GV+ V N+ I + GFA I + + +
Sbjct: 18 EAQEVILPSTTGQLGILGGHAPLLTALDTGVMRVRAENDWIAIALMGGFAEIEADEVSIL 77
Query: 62 IAVEAPSTNLEKAEAQI 78
+ N++ +A++
Sbjct: 78 VNGAERGDNIDTEKARL 94
>sp|Q55F42|ATPD_DICDI ATP synthase subunit delta, mitochondrial OS=Dictyostelium
discoideum GN=atp5D PE=3 SV=1
Length = 170
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 6 IIIPSTTGLMSVLPGHASIIAVLKSGVLSV-HEGNEVIKYFISSGFALIHTNSYAEIIAV 64
+ +P G+ V H IA LK GV+ + HE ++ K+FIS GFA ++ ++ I +
Sbjct: 57 VTLPGAKGIFGVAKNHVPRIAELKPGVIQINHENGDLEKFFISGGFAFVNPDASCYINTI 116
Query: 65 EA-PSTNLEKAEAQIGVDVHVAL 86
EA P L+ E + G+ + L
Sbjct: 117 EAVPIDQLDAEEVKNGLARYTQL 139
>sp|P51260|ATPE_PORPU ATP synthase epsilon chain, chloroplastic OS=Porphyra purpurea
GN=atpE PE=3 SV=1
Length = 134
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYAEI 61
E +II+PS+TG + +L GHA ++ L GV+ V E + + GFA I N +
Sbjct: 18 EAQEIILPSSTGQLGILTGHAPLLTALDIGVMRVRVDKEWMPIVLLGGFAEIENNQLTIL 77
Query: 62 I--AVEAPSTNLEKAEAQIGVDVHVALNSALTGK 93
+ A EA +L +AE + + LN A + K
Sbjct: 78 VNGAEEASQIDLVEAEKNLDTATQL-LNDASSSK 110
>sp|B6IPC5|ATPE_RHOCS ATP synthase epsilon chain OS=Rhodospirillum centenum (strain
ATCC 51521 / SW) GN=atpC PE=3 SV=1
Length = 146
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 6 IIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVI---KYFISSGFALIHTNSYAEII 62
+++P GL VLPGHA +I ++ G++ V+ N+ + F++ GFA + T++ ++
Sbjct: 24 VVVPGADGLFGVLPGHAPMIVTVRPGIIDVYGDNQTTVSRRIFVAGGFAEV-TDTRCTVL 82
Query: 63 AVEA 66
A EA
Sbjct: 83 AEEA 86
>sp|A9BCC7|ATPE_PROM4 ATP synthase epsilon chain OS=Prochlorococcus marinus (strain MIT
9211) GN=atpC PE=3 SV=1
Length = 135
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 11/86 (12%)
Query: 4 DKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSY----- 58
+++I+PSTTGL+ +LPGH S++ + +GVL V + GFA + ++
Sbjct: 20 EEVILPSTTGLLGILPGHISMVTAIDTGVLRVRTNGNWDSIALMGGFAEVESDEVTVLVN 79
Query: 59 -----AEIIAVEAPSTNLEKAEAQIG 79
+EI A +A S E+A+ + G
Sbjct: 80 AAELASEINASDAES-EFEQAKTEFG 104
>sp|A5GNB2|ATPE_SYNPW ATP synthase epsilon chain OS=Synechococcus sp. (strain WH7803)
GN=atpC PE=3 SV=1
Length = 136
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 4 DKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTN 56
D++I+PSTTG + +LPGH S++A L GVL V + GFA + +
Sbjct: 20 DEVILPSTTGQLGILPGHVSLLAALDVGVLRVRADGGWKSIALMGGFAEVDAD 72
>sp|Q0C101|ATPE_HYPNA ATP synthase epsilon chain OS=Hyphomonas neptunium (strain ATCC
15444) GN=atpC PE=3 SV=1
Length = 135
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVI-KYFISSGFALIHTNSYAE 60
++D +I P T G VL HA + LK+GV+ V EG+ V ++++ GFA + T +
Sbjct: 20 QVDHVIAPGTEGEFGVLVNHAPFMTTLKNGVVRVLEGDVVRHRFYVRGGFADV-TPAGLT 78
Query: 61 IIAVEAPSTNLEKAEAQ-IGVDVHVA 85
I+A EA NL A AQ I V+V A
Sbjct: 79 ILAEEA--RNLSDASAQEIDVEVEAA 102
>sp|Q1XDM7|ATPE_PORYE ATP synthase epsilon chain, chloroplastic OS=Porphyra yezoensis
GN=atpE PE=3 SV=1
Length = 134
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYAEI 61
E +II+PS+TG + +L GHA ++ L GV+ V E + + GFA I N +
Sbjct: 18 EAQEIILPSSTGQLGILTGHAPLLTALDIGVMRVRVDKEWMPIVLLGGFAEIENNQLTIL 77
Query: 62 I--AVEAPSTNLEKAE 75
+ A EA +L +AE
Sbjct: 78 VNGAEEASQIDLSEAE 93
>sp|B7KGV3|ATPE_CYAP7 ATP synthase epsilon chain OS=Cyanothece sp. (strain PCC 7424)
GN=atpC PE=3 SV=1
Length = 138
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTN 56
E ++II+PSTTG + +L GHA ++ L GV+ V G + + GFA + N
Sbjct: 18 EAEEIILPSTTGQLGILSGHAPLLTALNIGVVRVRPGKDWQTIAVMGGFAEVENN 72
>sp|Q20EW9|ATPE_OLTVI ATP synthase epsilon chain, chloroplastic OS=Oltmannsiellopsis
viridis GN=atpE PE=3 SV=1
Length = 131
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNS 57
E+D+II+P+ TG M VL HA +I L GV+ V + + GFAL+ N
Sbjct: 18 EVDEIILPTNTGQMGVLSNHAPLITALDIGVMLVRTQKDWESVAVMGGFALVKQNQ 73
>sp|P49648|ATPE_ODOSI ATP synthase epsilon chain, chloroplastic OS=Odontella sinensis
GN=atpE PE=3 SV=1
Length = 133
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 4 DKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYA---- 59
D++I+P TGL+ +L GHA++I L +G+L + + + G A I N
Sbjct: 20 DEVILPGLTGLVGILDGHAALITALDTGLLRIKLNEKWTPIILCGGLAEIDRNRVTVLVN 79
Query: 60 ---EIIAVE--APSTNLEKA 74
E++AVE +T LEKA
Sbjct: 80 DVEELVAVELNEATTELEKA 99
>sp|Q05375|ATPE_SYNP1 ATP synthase epsilon chain OS=Synechococcus sp. (strain PCC 6716)
GN=atpC PE=1 SV=3
Length = 138
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 4 DKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYAEII- 62
+++I+PSTTG + +L HA ++ L++GV+ V + E + + GFA + N ++
Sbjct: 20 EEVILPSTTGQLGILSNHAPLLTALETGVMRVRQEREWVAIALMGGFAEVENNEVTVLVN 79
Query: 63 -AVEAPSTNLEKAEAQI 78
A + +LE A+ +
Sbjct: 80 AAERGDTIDLETAKREF 96
>sp|Q06FV4|ATPE_PELHO ATP synthase epsilon chain, chloroplastic OS=Pelargonium hortorum
GN=atpE PE=3 SV=1
Length = 134
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYF---ISSGFALIHTNSY 58
E+ +II+P+ +G + VLP HASI+ + GVL + N+ ++F + GF I N
Sbjct: 18 EVKEIILPTNSGQIGVLPNHASIVTTIDIGVLRIRHFND--QWFTIALMGGFTRIRNNEI 75
Query: 59 AEIIAVEAPSTNLEKAEAQ 77
+ ++++ EAQ
Sbjct: 76 TILATAAEKGSDIDPQEAQ 94
>sp|Q8DLG7|ATPE_THEEB ATP synthase epsilon chain OS=Thermosynechococcus elongatus
(strain BP-1) GN=atpC PE=1 SV=1
Length = 138
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 4 DKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNS 57
+++I+PSTTG + +L HA ++ L++GV+ V + E + + GFA + N
Sbjct: 20 EEVILPSTTGQLGILSNHAPLLTALETGVMRVRQDREWVAIALMGGFAEVENNE 73
>sp|P07891|ATPE_CHLRE ATP synthase epsilon chain, chloroplastic OS=Chlamydomonas
reinhardtii GN=atpE PE=1 SV=4
Length = 141
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 48/110 (43%), Gaps = 25/110 (22%)
Query: 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEG------NEVIKYFISSGFALIHT 55
+ D+II+P+ TG M VL HA II L G + + G +E Y I GFAL+
Sbjct: 18 QADEIILPTETGEMGVLKNHAPIITGLNVGAMLIRGGQASGSKDEWNSYAIMGGFALVKQ 77
Query: 56 NSY---------AEII-------AVEAPSTNLEKAEAQIGVDVHVALNSA 89
N AE I A E NLEKAE GV V N A
Sbjct: 78 NQVTILANEAVSAENINPEEAKDAFETAKANLEKAE---GVKEKVEANFA 124
>sp|Q3ZJ67|ATPE_PSEAK ATP synthase epsilon chain, chloroplastic OS=Pseudendoclonium
akinetum GN=atpE PE=3 SV=1
Length = 130
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNS 57
E ++II+P+ TG M VL HA II L G++S+ + + GFAL+ N
Sbjct: 18 EAEEIILPTNTGQMGVLTNHAPIITALDIGIMSIRTQKDWTSVALMGGFALVKQNQ 73
>sp|P26533|ATPE_SYNY3 ATP synthase epsilon chain OS=Synechocystis sp. (strain PCC 6803
/ Kazusa) GN=atpC PE=1 SV=3
Length = 136
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTN 56
E+ ++I+PSTTG + +L HA ++ L+ GV+ V G + + GFA + N
Sbjct: 18 EVQELILPSTTGQLGILSNHAPLLTALEIGVMRVRPGKDWQNIAVMGGFAEVENN 72
>sp|O78492|ATPE_GUITH ATP synthase epsilon chain, chloroplastic OS=Guillardia theta
GN=atpE PE=3 SV=1
Length = 131
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 4 DKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYAEIIA 63
+++I+PS+TG + +L GHA ++ L GV+ V + + GFA I + ++
Sbjct: 20 EEVILPSSTGQLGILKGHAPLLTALDIGVMRVRVDRDWTPIVLLGGFAEIENDELTILVN 79
Query: 64 VEAPSTNLEKAEAQIGV-DVHVALNSALTGK 93
++ +++ +AQ + ++ V N A T K
Sbjct: 80 GAEEASQIDRDQAQRDLEEMTVKFNEATTNK 110
>sp|Q1KVW5|ATPE_SCEOB ATP synthase epsilon chain, chloroplastic OS=Scenedesmus obliquus
GN=atpE PE=3 SV=1
Length = 136
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 47/105 (44%), Gaps = 21/105 (20%)
Query: 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYAEI 61
+ ++II+P+ TG M VL HA II L G + V E Y + GFA++ N I
Sbjct: 18 QAEEIILPTETGEMGVLKNHAPIITGLDVGAMLVRTKEEWNSYALMGGFAVVKKNKVT-I 76
Query: 62 IAVEAPST-----------------NLEKAEAQIGVDVHVALNSA 89
+A EA S NLEKAE GV V N A
Sbjct: 77 LANEAESAETIDAEEAKNAFEIAKGNLEKAE---GVKQKVEANFA 118
>sp|Q5LNP2|ATPE_RUEPO ATP synthase epsilon chain OS=Ruegeria pomeroyi (strain ATCC
700808 / DSM 15171 / DSS-3) GN=atpC PE=3 SV=1
Length = 136
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 1 MEIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYAE 60
+++ + IP G M+ +P HA I L+ GVL V +Y ++ GFA I +S +
Sbjct: 19 LQVSAVQIPGADGDMTAMPDHAPTITTLRPGVLKVEGPEGTSEYLVTGGFAQIGADSLSV 78
Query: 61 IIAVEAPSTNLEKA 74
+ P T + +A
Sbjct: 79 LAEKAIPVTEVTRA 92
>sp|Q04ZU6|ATPE_LEPBL ATP synthase epsilon chain OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain L550) GN=atpC PE=3 SV=1
Length = 127
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNS 57
E+D +++P + G +LP HA ++A L GVL + +G ++ + GF + N+
Sbjct: 21 EVDSLVVPGSEGFFGILPNHAPLVATLGIGVLEIRKGEKLKNISVEGGFIEVKDNT 76
>sp|Q04S19|ATPE_LEPBJ ATP synthase epsilon chain OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain JB197) GN=atpC PE=3 SV=1
Length = 127
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNS 57
E+D +++P + G +LP HA ++A L GVL + +G ++ + GF + N+
Sbjct: 21 EVDSLVVPGSEGFFGILPNHAPLVATLGIGVLEIRKGEKLKNISVEGGFIEVKDNT 76
>sp|B1XI04|ATPE_SYNP2 ATP synthase epsilon chain OS=Synechococcus sp. (strain ATCC 27264
/ PCC 7002 / PR-6) GN=atpC PE=3 SV=1
Length = 134
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 12/86 (13%)
Query: 3 IDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVH-EGNEVIKYFISSGFA---------L 52
++++I+PS++G + +L GHA ++ L+SGV+ V G E I I+ GFA L
Sbjct: 19 VEEVILPSSSGQIGILSGHAPLLTALESGVIRVRTSGWENIA--ITDGFAEVEANEVKVL 76
Query: 53 IHTNSYAEIIAVEAPSTNLEKAEAQI 78
++T + + I +E E A+AQ+
Sbjct: 77 VNTAAKGQDIDLEEARKAFESAKAQL 102
>sp|B0CAT4|ATPE_ACAM1 ATP synthase epsilon chain OS=Acaryochloris marina (strain MBIC
11017) GN=atpC PE=3 SV=1
Length = 138
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 4 DKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFA---------LIH 54
+++I+PSTTG + +L GHA +++ L GV+ V G + + + GF L++
Sbjct: 20 EEVILPSTTGQLGILSGHAPLLSALDVGVMRVRPGKDWVSIALMGGFVEVENDEVVILVN 79
Query: 55 TNSYAEIIAVEAPSTNLEKAEAQI 78
+ I E + L A+A++
Sbjct: 80 GAERGDTIDREEARSTLSAAQARL 103
>sp|Q318V3|ATPE_PROM9 ATP synthase epsilon chain OS=Prochlorococcus marinus (strain MIT
9312) GN=atpC PE=3 SV=1
Length = 134
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTN 56
E +++I+PSTTG + VLPGH S++ + GVL + ++ + GFA I ++
Sbjct: 18 EAEEVILPSTTGQLGVLPGHISLVTAIDIGVLRLRMNSQWQSIALMGGFAEIESD 72
>sp|P78700|ATPD_KLULA ATP synthase subunit delta, mitochondrial OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=ATP16 PE=3 SV=2
Length = 159
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 3 IDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYAEII 62
+ ++ +P+ +G + +L H + L GV+ V EG+ K+F+S GFA + +S I
Sbjct: 48 VTQVNLPAKSGQIGILANHVPTVEQLVPGVVEVLEGSSSKKFFVSGGFATVQPDSTLAIT 107
Query: 63 AVEA 66
+VEA
Sbjct: 108 SVEA 111
>sp|A0T0R7|ATPE_THAPS ATP synthase epsilon chain, chloroplastic OS=Thalassiosira
pseudonana GN=atpE PE=3 SV=1
Length = 133
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 4 DKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYA---- 59
D++I+P TG + VL GHA++I L +G+L + ++ + G A I N
Sbjct: 20 DEVILPGLTGQVGVLDGHATLITALDTGLLRIKLADKWTPIILCGGLAEIDRNRVTVLVN 79
Query: 60 ---EIIAVE--APSTNLEKAEAQI 78
E++AVE + LEKA + I
Sbjct: 80 DVEELVAVELSEATKELEKATSAI 103
>sp|Q7VA75|ATPE_PROMA ATP synthase epsilon chain OS=Prochlorococcus marinus (strain
SARG / CCMP1375 / SS120) GN=atpC PE=3 SV=1
Length = 136
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 3 IDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYF-ISSGFALIHTNSYAEI 61
++++I+PSTTGL+ +LPGH S++ + GVL + N + GFA + ++ +
Sbjct: 19 VEEVILPSTTGLLGILPGHISMVTAIDIGVLKLRSSNGNWDSIALMGGFAEVESDDVTVL 78
Query: 62 IAVEAPSTNLEKAEAQ 77
+ +++KA A+
Sbjct: 79 VNAAELGKSIDKATAE 94
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,399,338
Number of Sequences: 539616
Number of extensions: 1053754
Number of successful extensions: 3812
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 108
Number of HSP's that attempted gapping in prelim test: 3379
Number of HSP's gapped (non-prelim): 517
length of query: 94
length of database: 191,569,459
effective HSP length: 64
effective length of query: 30
effective length of database: 157,034,035
effective search space: 4711021050
effective search space used: 4711021050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)