Query 041201
Match_columns 94
No_of_seqs 176 out of 1019
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 04:47:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041201.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041201hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00539 atpC F0F1 ATP synthas 100.0 1E-28 2.2E-33 168.0 8.9 79 1-79 18-106 (133)
2 PRK13452 atpC F0F1 ATP synthas 100.0 2.5E-28 5.5E-33 168.1 10.7 80 1-80 20-108 (145)
3 PRK13444 atpC F0F1 ATP synthas 100.0 2.9E-28 6.3E-33 164.3 10.7 79 1-79 20-107 (127)
4 PRK13451 atpC F0F1 ATP synthas 100.0 1.1E-28 2.4E-33 160.8 8.2 77 1-77 15-100 (101)
5 PRK14735 atpC F0F1 ATP synthas 100.0 5.2E-28 1.1E-32 165.4 9.4 79 1-79 17-104 (139)
6 PRK13448 atpC F0F1 ATP synthas 100.0 6.9E-28 1.5E-32 164.2 9.8 80 1-80 18-106 (135)
7 PRK01474 atpC F0F1 ATP synthas 100.0 5.8E-28 1.3E-32 159.9 8.8 80 1-80 19-110 (112)
8 CHL00063 atpE ATP synthase CF1 100.0 6.1E-28 1.3E-32 164.0 9.1 79 1-79 17-104 (134)
9 PRK13446 atpC F0F1 ATP synthas 99.9 9.9E-28 2.1E-32 163.3 9.6 79 1-79 19-106 (136)
10 PRK14736 atpC F0F1 ATP synthas 99.9 1.2E-27 2.7E-32 162.7 9.7 79 1-79 18-106 (133)
11 PRK13443 atpC F0F1 ATP synthas 99.9 9.3E-28 2E-32 164.0 9.1 80 1-80 19-107 (136)
12 PRK13450 atpC F0F1 ATP synthas 99.9 1.8E-27 3.8E-32 161.4 9.6 79 1-79 18-106 (132)
13 PRK00571 atpC F0F1 ATP synthas 99.9 8E-27 1.7E-31 158.3 10.4 79 1-79 18-106 (135)
14 COG0355 AtpC F0F1-type ATP syn 99.9 6.9E-27 1.5E-31 159.5 9.4 79 1-79 18-107 (135)
15 TIGR01216 ATP_synt_epsi ATP sy 99.9 1.3E-26 2.8E-31 156.5 9.0 79 1-79 16-104 (130)
16 KOG1758 Mitochondrial F1F0-ATP 99.9 2.1E-24 4.5E-29 149.0 8.3 90 2-91 45-159 (159)
17 TIGR03166 alt_F1F0_F1_eps alte 99.9 4.5E-23 9.7E-28 138.5 10.9 59 1-59 15-74 (122)
18 PRK13449 atpC F0F1 ATP synthas 99.9 2.8E-23 6E-28 132.5 8.1 67 1-69 18-86 (88)
19 PRK06228 F0F1 ATP synthase sub 99.9 1.7E-22 3.8E-27 137.2 11.2 59 1-59 17-77 (131)
20 PRK13447 F0F1 ATP synthase sub 99.9 1E-22 2.2E-27 139.1 9.9 71 2-72 17-98 (136)
21 PRK13442 atpC F0F1 ATP synthas 99.9 6.9E-23 1.5E-27 130.8 8.3 66 1-68 20-86 (89)
22 PF02823 ATP-synt_DE_N: ATP sy 99.9 8.7E-22 1.9E-26 122.8 8.3 59 1-59 15-74 (80)
23 PF00401 ATP-synt_DE: ATP synt 95.4 0.0055 1.2E-07 34.7 0.6 19 60-78 1-19 (48)
24 PRK10579 hypothetical protein; 68.2 21 0.00047 23.0 5.2 56 1-57 10-77 (94)
25 COG3070 TfoX Regulator of comp 66.1 3.3 7.2E-05 27.7 1.1 35 4-39 19-53 (121)
26 COG1795 Formaldehyde-activatin 47.7 9 0.0002 27.1 0.8 15 19-33 43-57 (170)
27 PF01797 Y1_Tnp: Transposase I 39.0 20 0.00043 22.5 1.4 19 14-32 44-62 (121)
28 PHA02106 hypothetical protein 38.1 10 0.00023 23.8 -0.0 15 6-20 35-49 (91)
29 PF04795 PAPA-1: PAPA-1-like c 34.1 48 0.001 20.8 2.5 29 65-93 8-36 (89)
30 COG3779 Uncharacterized protei 34.0 74 0.0016 22.1 3.6 43 10-52 80-123 (151)
31 smart00523 DWA Domain A in dwa 33.9 51 0.0011 21.7 2.7 30 64-93 3-32 (109)
32 COG0147 TrpE Anthranilate/para 33.8 53 0.0011 26.6 3.3 67 19-85 239-315 (462)
33 PRK15465 pabB aminodeoxychoris 29.5 65 0.0014 26.1 3.2 70 20-89 237-316 (453)
34 COG1943 Transposase and inacti 29.5 33 0.00072 23.0 1.3 19 14-32 52-70 (136)
35 PF06347 SH3_4: Bacterial SH3 28.7 1.1E+02 0.0023 16.7 3.7 25 21-45 14-40 (55)
36 COG1863 MnhE Multisubunit Na+/ 28.0 1.8E+02 0.0039 20.3 4.8 18 71-88 138-155 (158)
37 PF08714 Fae: Formaldehyde-act 26.7 38 0.00082 23.9 1.2 15 19-33 39-53 (159)
38 PLN02445 anthranilate synthase 26.2 1.7E+02 0.0036 24.3 5.0 69 20-88 282-360 (523)
39 PRK13570 anthranilate synthase 25.3 1.2E+02 0.0025 24.6 3.9 69 20-88 241-319 (455)
40 PRK12596 putative monovalent c 24.8 46 0.00099 23.2 1.4 10 28-37 88-97 (171)
41 PF10150 RNase_E_G: Ribonuclea 24.3 1.3E+02 0.0029 22.4 3.9 27 43-69 160-187 (271)
42 COG4871 Uncharacterized protei 24.1 1.5E+02 0.0033 21.3 3.9 58 19-82 45-110 (193)
43 PF06865 DUF1255: Protein of u 23.6 2.1E+02 0.0046 18.4 6.3 57 1-58 10-78 (94)
44 PF03315 SDH_beta: Serine dehy 23.6 91 0.002 21.5 2.7 16 41-56 140-155 (157)
45 PRK13567 anthranilate synthase 22.9 1.5E+02 0.0033 24.1 4.2 71 19-89 252-332 (468)
46 PRK15023 L-serine deaminase; P 21.9 1.9E+02 0.0042 23.6 4.6 26 29-54 123-154 (454)
47 COG1667 Uncharacterized protei 21.6 2.1E+02 0.0046 21.6 4.4 43 13-59 12-57 (254)
48 PF09650 PHA_gran_rgn: Putativ 21.4 1.3E+02 0.0028 18.7 2.8 12 48-59 48-59 (87)
49 TIGR01823 PabB-fungal aminodeo 21.0 1E+02 0.0022 26.5 3.0 69 20-88 520-597 (742)
50 PRK08965 putative monovalent c 20.6 2.1E+02 0.0046 19.6 4.1 10 28-37 90-99 (162)
No 1
>PRK00539 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=99.96 E-value=1e-28 Score=167.97 Aligned_cols=79 Identities=18% Similarity=0.216 Sum_probs=75.3
Q ss_pred CceEEEEEecCceeeeeccCCcceeeeecceEEEEEe-CCeEEEEEeCccEEEEeCCeEe---------EecccccchhH
Q 041201 1 MEIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHE-GNEVIKYFISSGFALIHTNSYA---------EIIAVEAPSTN 70 (94)
Q Consensus 1 g~v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~-~~~~~~~~v~gGf~~v~~~~v~---------~~Id~e~A~~~ 70 (94)
|+|++|++||++|+|||||||+|+|+.|.||.++|+. +++++.++|+|||++|.+|+++ ++||+++|+++
T Consensus 18 ~~v~~V~l~t~~G~~gIL~~Haplit~L~~G~~~i~~~~~~~~~~~v~gGf~ev~~n~v~Ilad~ae~~eeID~~~a~~a 97 (133)
T PRK00539 18 EKIISAQVKTTEGYAGLNRNRAPLIAAIQSHVCKITFADKTKRSAIIGAGLLLIKKTEAKIFTENFVFADELDYDETLKR 97 (133)
T ss_pred ceEEEEEEecCccCceecCCCcceEeEecceEEEEEECCCcEEEEEEeeeEEEEECCEEEEEECeEEchhhCCHHHHHHH
Confidence 6899999999999999999999999999999999986 6777889999999999999998 89999999999
Q ss_pred HHHHHHHhh
Q 041201 71 LEKAEAQIG 79 (94)
Q Consensus 71 ~~rAe~~l~ 79 (94)
++|||++|+
T Consensus 98 ~erAe~~L~ 106 (133)
T PRK00539 98 KKELERKIK 106 (133)
T ss_pred HHHHHHHHH
Confidence 999999995
No 2
>PRK13452 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.96 E-value=2.5e-28 Score=168.13 Aligned_cols=80 Identities=18% Similarity=0.320 Sum_probs=75.9
Q ss_pred CceEEEEEecCceeeeeccCCcceeeeecceEEEEEeCCeEEEEEeCccEEEEeCCeEe---------EecccccchhHH
Q 041201 1 MEIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYA---------EIIAVEAPSTNL 71 (94)
Q Consensus 1 g~v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~v~gGf~~v~~~~v~---------~~Id~e~A~~~~ 71 (94)
|+|++|++||.+|+|||||||+|+++.|.||.++|+.++++..|+|+|||++|.+|+++ ++||+++|++++
T Consensus 20 g~v~~V~lp~~~G~~GILp~H~plit~L~~G~l~i~~~~~~~~~~v~gGf~eV~~n~v~Ilad~ae~~~eID~~~ae~a~ 99 (145)
T PRK13452 20 GEADMVSLRGSAGEMGIAYGHTELLSTLPAGVVNVRKDQHTDVLYVSGGIVEVTPTRVTIMVDDMERAENLNQAEAEKAR 99 (145)
T ss_pred ceeEEEEEEcCccCeEecCCCcceEeeecceEEEEEECCcEEEEEEcceEEEEECCEEEEEeCeeeccccCCHHHHHHHH
Confidence 68999999999999999999999999999999999877788889999999999999997 899999999999
Q ss_pred HHHHHHhhh
Q 041201 72 EKAEAQIGV 80 (94)
Q Consensus 72 ~rAe~~l~~ 80 (94)
++|+++|+.
T Consensus 100 ~~Ae~~L~~ 108 (145)
T PRK13452 100 ARAKEVLKN 108 (145)
T ss_pred HHHHHHHHh
Confidence 999999954
No 3
>PRK13444 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.96 E-value=2.9e-28 Score=164.33 Aligned_cols=79 Identities=29% Similarity=0.530 Sum_probs=75.7
Q ss_pred CceEEEEEecCceeeeeccCCcceeeeecceEEEEEeCCeEEEEEeCccEEEEeCCeEe---------EecccccchhHH
Q 041201 1 MEIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYA---------EIIAVEAPSTNL 71 (94)
Q Consensus 1 g~v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~v~gGf~~v~~~~v~---------~~Id~e~A~~~~ 71 (94)
|+|++|++||.+|+|||||||+|+++.|.||+++|+.++++.+|+|+|||++|.+|+++ ++||.++|++++
T Consensus 20 ~~v~~V~~p~~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~v~gG~~~v~~~~v~Il~~~a~~~~diD~~~a~~~~ 99 (127)
T PRK13444 20 GEVDSLIVPGSEGFFGILPNHAPLVATLGIGLLEIRKGEKLKRISVEGGFCEVKDNQISILTDHGALKEDIDHEHEKKLL 99 (127)
T ss_pred ceEEEEEEECCccCeEecCCCcCeEeEeccEEEEEEECCeEEEEEEeceEEEEECCEEEEEEeEEEehhhCCHHHHHHHH
Confidence 57999999999999999999999999999999999887888889999999999999987 899999999999
Q ss_pred HHHHHHhh
Q 041201 72 EKAEAQIG 79 (94)
Q Consensus 72 ~rAe~~l~ 79 (94)
++||++|+
T Consensus 100 ~~Ae~~l~ 107 (127)
T PRK13444 100 AEAEKLPP 107 (127)
T ss_pred HHHHHHHh
Confidence 99999996
No 4
>PRK13451 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.96 E-value=1.1e-28 Score=160.84 Aligned_cols=77 Identities=25% Similarity=0.320 Sum_probs=72.6
Q ss_pred CceEEEEEecCceeeeeccCCcceeeeecceEEEEEeCCeEEEEEeCccEEEEeCCeEe---------EecccccchhHH
Q 041201 1 MEIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYA---------EIIAVEAPSTNL 71 (94)
Q Consensus 1 g~v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~v~gGf~~v~~~~v~---------~~Id~e~A~~~~ 71 (94)
|+|++|++||.+|+|||||||+|+++.|.||.++|+.+++++.|+++|||++|.+|+++ ++||.++|++++
T Consensus 15 ~~v~~V~~pt~~G~~GILp~H~p~it~L~~G~l~i~~~~~~~~~~v~gGf~~v~~~~v~Il~~~a~~~e~ID~~~a~~a~ 94 (101)
T PRK13451 15 RESDFVSFRTVEGEMGILPRRAPIIAKLSVCDVKIKSGDDEYEYKVADGFLHCDGKNVIIITEEAGREEEISPHRYLGAR 94 (101)
T ss_pred ceeEEEEEEcCccCeEEcCCCcceEEEecceEEEEEECCcEEEEEEeccEEEEECCEEEEEEeEeEehhhCCHHHHHHHH
Confidence 68999999999999999999999999999999999977778889999999999999997 799999999999
Q ss_pred HHHHHH
Q 041201 72 EKAEAQ 77 (94)
Q Consensus 72 ~rAe~~ 77 (94)
+||+.-
T Consensus 95 ~~Ae~~ 100 (101)
T PRK13451 95 ERVERV 100 (101)
T ss_pred HHhhcc
Confidence 999863
No 5
>PRK14735 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.95 E-value=5.2e-28 Score=165.39 Aligned_cols=79 Identities=23% Similarity=0.395 Sum_probs=75.5
Q ss_pred CceEEEEEecCceeeeeccCCcceeeeecceEEEEEeCCeEEEEEeCccEEEEeCCeEe---------EecccccchhHH
Q 041201 1 MEIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYA---------EIIAVEAPSTNL 71 (94)
Q Consensus 1 g~v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~v~gGf~~v~~~~v~---------~~Id~e~A~~~~ 71 (94)
|+|++|++||.+|+|||||||+|+++.|.||+++|+.++.+..|+|+|||++|.+|+++ ++||.++|+.++
T Consensus 17 ~~v~~V~~p~~~G~~gILp~H~P~it~L~~G~v~i~~~g~~~~~~v~gGf~ev~~~~v~Ila~~a~~~edID~~~a~~a~ 96 (139)
T PRK14735 17 DDVDMISAPTKDGRVGILPRHAPLLTILEPGELDIVKNGVRTPFAISGGFMEVLPHRVTILADTAERADEIDEARAEQAR 96 (139)
T ss_pred eeEEEEEEecCccCeeEcCCCcceEEEecceEEEEEECCeEEEEEEcccEEEEeCCEEEEEeeeEEEcccCCHHHHHHHH
Confidence 57999999999999999999999999999999999878888899999999999999987 899999999999
Q ss_pred HHHHHHhh
Q 041201 72 EKAEAQIG 79 (94)
Q Consensus 72 ~rAe~~l~ 79 (94)
++|+++|+
T Consensus 97 e~Ae~~l~ 104 (139)
T PRK14735 97 AEAEQRRR 104 (139)
T ss_pred HHHHHHHH
Confidence 99999994
No 6
>PRK13448 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.95 E-value=6.9e-28 Score=164.16 Aligned_cols=80 Identities=28% Similarity=0.486 Sum_probs=75.4
Q ss_pred CceEEEEEecCceeeeeccCCcceeeeecceEEEEEeCCeEEEEEeCccEEEEeCCeEe---------EecccccchhHH
Q 041201 1 MEIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYA---------EIIAVEAPSTNL 71 (94)
Q Consensus 1 g~v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~v~gGf~~v~~~~v~---------~~Id~e~A~~~~ 71 (94)
|+|++|++||.+|+|||||||+|+++.|.||+++|+.+++++.|+|+|||++|.+|+++ ++||.++|++++
T Consensus 18 ~~v~~V~~p~~~G~~gILp~H~p~it~L~pG~v~i~~~~~~~~~~v~gGf~eV~~~~v~Ila~~a~~~~dID~~~a~~~~ 97 (135)
T PRK13448 18 GEVDQVDIPGVEGDFGVLAGHAPVVAVIRPGILTVTAGGNQQKIVVLGGLAEVSEKGLTVLADVATSVADLDLAQFAATI 97 (135)
T ss_pred eeEEEEEEEcCccCeEEcCCCcceEeEeccEEEEEEECCcEEEEEEeccEEEEECCEEEEEEeeeEEcccCCHHHHHHHH
Confidence 57999999999999999999999999999999999877777789999999999999987 899999999999
Q ss_pred HHHHHHhhh
Q 041201 72 EKAEAQIGV 80 (94)
Q Consensus 72 ~rAe~~l~~ 80 (94)
++|+++|+.
T Consensus 98 ~~Ae~~l~~ 106 (135)
T PRK13448 98 AEMEAQLAG 106 (135)
T ss_pred HHHHHHHhh
Confidence 999999964
No 7
>PRK01474 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=99.95 E-value=5.8e-28 Score=159.93 Aligned_cols=80 Identities=23% Similarity=0.378 Sum_probs=73.9
Q ss_pred CceEEEEEecCceeeeeccCCcceeeeecceEEEEEeC---CeEEEEEeCccEEEEeCCeEe---------Eecccccch
Q 041201 1 MEIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEG---NEVIKYFISSGFALIHTNSYA---------EIIAVEAPS 68 (94)
Q Consensus 1 g~v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~~---~~~~~~~v~gGf~~v~~~~v~---------~~Id~e~A~ 68 (94)
|+|++|++||.+|+|||||||+|+++.|.||.++|+.+ +++++|+|+|||+++.+|+++ ++||.++|+
T Consensus 19 ~~v~~V~lp~~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~~~~v~gGf~~v~~n~v~Ila~~a~~~~~ID~~~a~ 98 (112)
T PRK01474 19 KQAKMVTMPGEEGMFGVLPSHVPMIVSLKAGLVQVYIDDMHKSENTYLISGGVTEVTGNYINIATETAINVTNLSEAEIA 98 (112)
T ss_pred eeEEEEEEEcCccCceecCCCcceEEEecceEEEEEECCCCCcEEEEEEcceEEEEECCEEEEEeCeeEEhhhCCHHHHH
Confidence 57999999999999999999999999999999999753 467789999999999999997 899999999
Q ss_pred hHHHHHHHHhhh
Q 041201 69 TNLEKAEAQIGV 80 (94)
Q Consensus 69 ~~~~rAe~~l~~ 80 (94)
++++||+++|..
T Consensus 99 ~~~~~A~~~l~~ 110 (112)
T PRK01474 99 TKLLDLQKTLSD 110 (112)
T ss_pred HHHHHHHHHHhh
Confidence 999999998853
No 8
>CHL00063 atpE ATP synthase CF1 epsilon subunit
Probab=99.95 E-value=6.1e-28 Score=164.05 Aligned_cols=79 Identities=33% Similarity=0.536 Sum_probs=75.4
Q ss_pred CceEEEEEecCceeeeeccCCcceeeeecceEEEEEeCCeEEEEEeCccEEEEeCCeEe---------EecccccchhHH
Q 041201 1 MEIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYA---------EIIAVEAPSTNL 71 (94)
Q Consensus 1 g~v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~v~gGf~~v~~~~v~---------~~Id~e~A~~~~ 71 (94)
|+|++|++||.+|+|||||||+|+++.|.||+++|+.++.+++|+|+|||++|.+|+++ ++||.++|++++
T Consensus 17 ~~v~~V~~p~~~G~~gIL~~H~p~it~L~~G~l~i~~~~~~~~~~v~gG~~~v~~~~v~Il~~~a~~~~dID~~~a~~~~ 96 (134)
T CHL00063 17 SEVEEIILPTNSGQIGVLPNHAPIATALDIGVLRIRLNDQWLTMALMGGFARIGNNEITILVNDAEKGSDIDPQEAQQTL 96 (134)
T ss_pred eeEEEEEEEcCccCceecCCCcceEeEecceEEEEEECCeEEEEEEcceEEEEECCEEEEEECeeEchhhCCHHHHHHHH
Confidence 57999999999999999999999999999999999877888899999999999999987 899999999999
Q ss_pred HHHHHHhh
Q 041201 72 EKAEAQIG 79 (94)
Q Consensus 72 ~rAe~~l~ 79 (94)
++|+++|.
T Consensus 97 ~~A~~~l~ 104 (134)
T CHL00063 97 EIAEANLE 104 (134)
T ss_pred HHHHHHHH
Confidence 99999994
No 9
>PRK13446 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.95 E-value=9.9e-28 Score=163.29 Aligned_cols=79 Identities=34% Similarity=0.540 Sum_probs=75.3
Q ss_pred CceEEEEEecCceeeeeccCCcceeeeecceEEEEEeCCeEEEEEeCccEEEEeCCeEe---------EecccccchhHH
Q 041201 1 MEIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYA---------EIIAVEAPSTNL 71 (94)
Q Consensus 1 g~v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~v~gGf~~v~~~~v~---------~~Id~e~A~~~~ 71 (94)
|+|++|++||.+|+|||||||+|+|+.|.||+++|+.++.+++|+|+|||++|.+|+|+ ++||.++|++++
T Consensus 19 ~~v~~V~lpt~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~v~gG~~~v~~~~v~Il~~~a~~~~~iD~~~a~~~~ 98 (136)
T PRK13446 19 EEVDEVGAPGVLGEFGVLPGHAPFLTALKIGELTYKKGGKTHYVAVNGGFAEVSNNKVTVLAETAERAEEIDVERARAAL 98 (136)
T ss_pred eeEEEEEEEcCccCeEEcCCCcceEEEeeccEEEEEeCCcEEEEEEcCEEEEEECCEEEEEeeeEEEhhhCCHHHHHHHH
Confidence 57999999999999999999999999999999999887788889999999999999987 899999999999
Q ss_pred HHHHHHhh
Q 041201 72 EKAEAQIG 79 (94)
Q Consensus 72 ~rAe~~l~ 79 (94)
++|+++|+
T Consensus 99 ~~A~~~l~ 106 (136)
T PRK13446 99 ERAEQRLK 106 (136)
T ss_pred HHHHHHHH
Confidence 99999995
No 10
>PRK14736 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.95 E-value=1.2e-27 Score=162.67 Aligned_cols=79 Identities=32% Similarity=0.542 Sum_probs=74.9
Q ss_pred CceEEEEEecCceeeeeccCCcceeeeecceEEEEEe-CCeEEEEEeCccEEEEeCCeEe---------EecccccchhH
Q 041201 1 MEIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHE-GNEVIKYFISSGFALIHTNSYA---------EIIAVEAPSTN 70 (94)
Q Consensus 1 g~v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~-~~~~~~~~v~gGf~~v~~~~v~---------~~Id~e~A~~~ 70 (94)
|+|++|++||.+|+|||||||+|+|+.|.||+++|+. ++++++|+|+|||++|.+|+++ ++||+++|+++
T Consensus 18 ~~v~~V~vp~~~G~~gILp~H~P~it~L~~G~l~i~~~~~~~~~~~v~gGf~eV~~n~v~Ila~~ae~~eeID~~~a~~a 97 (133)
T PRK14736 18 GEVEAVQLPGSEGEMTVLPGHAPVLTTLKVGVITVTETTGNGKRIYVRGGFAEIGPTSVTVLAERAAPVEELTPEMIDRE 97 (133)
T ss_pred eeeEEEEEecCccCeeEcCCChhhEeEecceEEEEEECCCcEEEEEEeceEEEEECCEEEEEeeeeEEhhhCCHHHHHHH
Confidence 5799999999999999999999999999999999986 6788889999999999999987 79999999999
Q ss_pred HHHHHHHhh
Q 041201 71 LEKAEAQIG 79 (94)
Q Consensus 71 ~~rAe~~l~ 79 (94)
++||++.+.
T Consensus 98 ~~~Ae~~~~ 106 (133)
T PRK14736 98 IEAVEMERD 106 (133)
T ss_pred HHHHHHhhh
Confidence 999999884
No 11
>PRK13443 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.95 E-value=9.3e-28 Score=163.96 Aligned_cols=80 Identities=26% Similarity=0.446 Sum_probs=74.2
Q ss_pred CceEEEEEecCceeeeeccCCcceeeeecceEEEEEeCCeEEEEEeCccEEEEeCCeEe---------EecccccchhHH
Q 041201 1 MEIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYA---------EIIAVEAPSTNL 71 (94)
Q Consensus 1 g~v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~v~gGf~~v~~~~v~---------~~Id~e~A~~~~ 71 (94)
|+|++|++||.+|+|||||||+|+++.|+||.++|+.+++++.|+|+|||++|.+|+++ ++||.++|++++
T Consensus 19 gev~~V~lpt~~Ge~GILp~H~Plit~L~pG~v~i~~~~~~~~~avsgGf~eV~~n~V~Ilad~a~~~edID~~~a~~a~ 98 (136)
T PRK13443 19 FQATAVQIPGADGDMTAMEGHAPTITTLRPGILRAHGPSGTQEYAVTGGFAEINATSISVLAEKAIPVEELTGAVLDEFI 98 (136)
T ss_pred ceEEEEEEecCccCeeEcCCCcceEEEecceEEEEEECCCeEEEEEcceEEEEECCEEEEEeCeeEEhhhCCHHHHHHHH
Confidence 67999999999999999999999999999999999875555669999999999999997 799999999999
Q ss_pred HHHHHHhhh
Q 041201 72 EKAEAQIGV 80 (94)
Q Consensus 72 ~rAe~~l~~ 80 (94)
+||+++|+.
T Consensus 99 ~~Ae~~l~~ 107 (136)
T PRK13443 99 AEARELASV 107 (136)
T ss_pred HHHHHHHHh
Confidence 999999953
No 12
>PRK13450 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.95 E-value=1.8e-27 Score=161.44 Aligned_cols=79 Identities=25% Similarity=0.415 Sum_probs=75.0
Q ss_pred CceEEEEEecCceeeeeccCCcceeeeecceEEEEEe-CCeEEEEEeCccEEEEeCCeEe---------EecccccchhH
Q 041201 1 MEIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHE-GNEVIKYFISSGFALIHTNSYA---------EIIAVEAPSTN 70 (94)
Q Consensus 1 g~v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~-~~~~~~~~v~gGf~~v~~~~v~---------~~Id~e~A~~~ 70 (94)
|+|++|++||.+|+|||||||+|+++.|+||+++|+. ++.+++|+|+|||++|.+|+++ ++||.++|+++
T Consensus 18 ~~v~~V~~p~~~G~~GILp~H~p~it~L~~G~l~i~~~~~~~~~~~v~gGf~~v~~~~v~Il~~~a~~~~~ID~~~a~~~ 97 (132)
T PRK13450 18 GEVKEVITEGLDGDIAILPNHVPLITYLKPTITKIIDENGEKKKIFTSSGVLKVENNEVYILCDASEWPEEIDIKRAENA 97 (132)
T ss_pred ceEEEEEEECCccCceecCCCcccEeEEccEEEEEEECCCcEEEEEEcCeEEEEECCEEEEEehhhcccccCCHHHHHHH
Confidence 6899999999999999999999999999999999986 7788899999999999999987 89999999999
Q ss_pred HHHHHHHhh
Q 041201 71 LEKAEAQIG 79 (94)
Q Consensus 71 ~~rAe~~l~ 79 (94)
+++|+++|+
T Consensus 98 ~~~A~~~l~ 106 (132)
T PRK13450 98 KKRAEERLR 106 (132)
T ss_pred HHHHHHHHh
Confidence 999999993
No 13
>PRK00571 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=99.94 E-value=8e-27 Score=158.27 Aligned_cols=79 Identities=27% Similarity=0.519 Sum_probs=74.7
Q ss_pred CceEEEEEecCceeeeeccCCcceeeeecceEEEEEe-CCeEEEEEeCccEEEEeCCeEe---------EecccccchhH
Q 041201 1 MEIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHE-GNEVIKYFISSGFALIHTNSYA---------EIIAVEAPSTN 70 (94)
Q Consensus 1 g~v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~-~~~~~~~~v~gGf~~v~~~~v~---------~~Id~e~A~~~ 70 (94)
++|++|++||.+|+|||||||+|+++.|.||+++|+. ++.+++|+|+|||++|.+|.++ ++||.++|+++
T Consensus 18 ~~v~~v~~~~~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~~v~gG~~~v~~n~v~Ila~~a~~~~~id~~~a~~~ 97 (135)
T PRK00571 18 GEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDGEEEVIAVSGGFLEVQPDKVTVLADSAERADDIDEARAEEA 97 (135)
T ss_pred eeEEEEEEEcCccCeeecCCCcceEEEeeceEEEEEECCCcEEEEEEccEEEEEECCEEEEEEeeEEEhhhCCHHHHHHH
Confidence 5799999999999999999999999999999999997 5677899999999999999987 79999999999
Q ss_pred HHHHHHHhh
Q 041201 71 LEKAEAQIG 79 (94)
Q Consensus 71 ~~rAe~~l~ 79 (94)
+++|+++|+
T Consensus 98 ~~~ae~~l~ 106 (135)
T PRK00571 98 KERAEEALE 106 (135)
T ss_pred HHHHHHHHh
Confidence 999999995
No 14
>COG0355 AtpC F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) [Energy production and conversion]
Probab=99.94 E-value=6.9e-27 Score=159.49 Aligned_cols=79 Identities=29% Similarity=0.537 Sum_probs=74.0
Q ss_pred CceEEEEEecCceeeeeccCCcceeeeecceEEEEEeC--CeEEEEEeCccEEEEeCCeEe---------Eecccccchh
Q 041201 1 MEIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEG--NEVIKYFISSGFALIHTNSYA---------EIIAVEAPST 69 (94)
Q Consensus 1 g~v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~~--~~~~~~~v~gGf~~v~~~~v~---------~~Id~e~A~~ 69 (94)
|+|++|++||++|+|||||||+|+|+.|+||.++|+.. +++.+|+|+|||++|.++.|+ ++||.++|+.
T Consensus 18 g~v~~V~~~t~eGe~GILp~H~Plit~Lk~g~v~i~~~~~~~~~~i~VsgGfleV~~~~vtIlad~A~~~~did~~~a~~ 97 (135)
T COG0355 18 GEVKSVVVPTTEGELGILPGHAPLITALKPGVVRIKTEDGDKEEKIAVSGGFLEVQPNEVTILADSAERADDIDEARAEE 97 (135)
T ss_pred eEEEEEEEecCCeeeecCCCCccceeeecCcEEEEEEcCCCceEEEEEeccEEEEeCCEEEEEEceeEecccCCHHHHHH
Confidence 57999999999999999999999999999999999974 356799999999999999998 8999999999
Q ss_pred HHHHHHHHhh
Q 041201 70 NLEKAEAQIG 79 (94)
Q Consensus 70 ~~~rAe~~l~ 79 (94)
++++|++.|+
T Consensus 98 ~~~~ae~~l~ 107 (135)
T COG0355 98 AKERAEKELE 107 (135)
T ss_pred HHHHHHHHHH
Confidence 9999999995
No 15
>TIGR01216 ATP_synt_epsi ATP synthase, F1 epsilon subunit (delta in mitochondria). This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation.
Probab=99.94 E-value=1.3e-26 Score=156.51 Aligned_cols=79 Identities=30% Similarity=0.579 Sum_probs=74.8
Q ss_pred CceEEEEEecCceeeeeccCCcceeeeecceEEEEEe-CCeEEEEEeCccEEEEeCCeEe---------EecccccchhH
Q 041201 1 MEIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHE-GNEVIKYFISSGFALIHTNSYA---------EIIAVEAPSTN 70 (94)
Q Consensus 1 g~v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~-~~~~~~~~v~gGf~~v~~~~v~---------~~Id~e~A~~~ 70 (94)
++|++|++||.+|+|||||||+|+|+.|.||+++|+. ++.+++|+|+|||++|.+|+++ ++||.++|+++
T Consensus 16 ~~v~~v~~~t~~G~~giL~~H~p~i~~L~~G~v~i~~~~~~~~~~~v~gG~~~v~~~~v~Il~~~a~~~~~id~~~a~~~ 95 (130)
T TIGR01216 16 GEVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWEHIAVSGGFAEVQPDKVTILADGAVFADDIDEAEAEKA 95 (130)
T ss_pred eeEEEEEEECCcCCeeecCCChhhEeEecceEEEEEECCCCEEEEEEcCcEEEEECCEEEEEEeEEEEcccCCHHHHHHH
Confidence 5799999999999999999999999999999999995 6778899999999999999987 89999999999
Q ss_pred HHHHHHHhh
Q 041201 71 LEKAEAQIG 79 (94)
Q Consensus 71 ~~rAe~~l~ 79 (94)
+++|+++|+
T Consensus 96 ~~~ae~~l~ 104 (130)
T TIGR01216 96 LEAAEKLLE 104 (130)
T ss_pred HHHHHHHHh
Confidence 999999994
No 16
>KOG1758 consensus Mitochondrial F1F0-ATP synthase, subunit delta/ATP16 [Energy production and conversion]
Probab=99.91 E-value=2.1e-24 Score=148.96 Aligned_cols=90 Identities=44% Similarity=0.636 Sum_probs=79.7
Q ss_pred ceEEEEEecCceeeeeccCCcceeeeecceEEEEEeCCeEE-EEEeCccEEEEeCCeE-e---------Eecccccch--
Q 041201 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVI-KYFISSGFALIHTNSY-A---------EIIAVEAPS-- 68 (94)
Q Consensus 2 ~v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~-~~~v~gGf~~v~~~~v-~---------~~Id~e~A~-- 68 (94)
+|++|.+||.+|.||||+||.|+++.|+||++.++.+++|+ +||+||||+.+.+|.. + ++||...|+
T Consensus 45 ~V~qVdvPt~sG~~GVLanHVPti~~LkPGvvsV~~~~~~~~k~FvSsGfa~v~~ds~~~ila~EA~~ledid~~~a~q~ 124 (159)
T KOG1758|consen 45 EVTQVDVPTLSGQIGVLANHVPTIQVLKPGVVSVHEGSGTKSKYFVSSGFATVNADSSLQILAEEAVKLEDIDPSEAQQL 124 (159)
T ss_pred eeEEEeccccCcceeeecccCcchheeccceEEEEeCCCcEEEEEEecceEEEcCCCeEEEEehhccccccCCHHHHHHH
Confidence 68999999999999999999999999999999999877776 9999999999996544 3 778877744
Q ss_pred ------------hHHHHHHHHhhhhHHHHHHHhhc
Q 041201 69 ------------TNLEKAEAQIGVDVHVALNSALT 91 (94)
Q Consensus 69 ------------~~~~rAe~~l~~~~~~a~~~a~~ 91 (94)
+++++||++|+.++++++.+||+
T Consensus 125 Le~aqa~l~~a~de~~~AEA~I~vev~ealv~Al~ 159 (159)
T KOG1758|consen 125 LEKAQAKLVSASDEREAAEAQIRVEVAEALVKALK 159 (159)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhC
Confidence 66778889999999999999985
No 17
>TIGR03166 alt_F1F0_F1_eps alternate F1F0 ATPase, F1 subunit epsilon. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 epsilon subunit of this apparent second ATP synthase.
Probab=99.90 E-value=4.5e-23 Score=138.52 Aligned_cols=59 Identities=19% Similarity=0.379 Sum_probs=56.1
Q ss_pred CceEEEEEecCceeeeeccCCcceeeeecceEEEEEe-CCeEEEEEeCccEEEEeCCeEe
Q 041201 1 MEIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHE-GNEVIKYFISSGFALIHTNSYA 59 (94)
Q Consensus 1 g~v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~-~~~~~~~~v~gGf~~v~~~~v~ 59 (94)
|+|++|++||.+|+|||||||+|+++.|.||.++|+. ++++++++|+|||+++.+|+++
T Consensus 15 ~~v~~v~~~~~~G~~GILp~H~p~it~L~~G~l~i~~~~~~~~~~av~gGf~~v~~n~v~ 74 (122)
T TIGR03166 15 LPVTRIVAETESGSFGLLPGHVDCVAALVPGILIYETADGGEHYVAVDQGILVKRGADVE 74 (122)
T ss_pred CcEEEEEEEcCcCCeEEcCCCcCeEeEeccEEEEEEECCCcEEEEEEeeeEEEEECCEEE
Confidence 5799999999999999999999999999999999986 7788899999999999999998
No 18
>PRK13449 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.89 E-value=2.8e-23 Score=132.50 Aligned_cols=67 Identities=27% Similarity=0.505 Sum_probs=59.1
Q ss_pred CceEEEEEecCceeeeeccCCcceeeeecceEEEEEe-CC-eEEEEEeCccEEEEeCCeEeEecccccchh
Q 041201 1 MEIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHE-GN-EVIKYFISSGFALIHTNSYAEIIAVEAPST 69 (94)
Q Consensus 1 g~v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~-~~-~~~~~~v~gGf~~v~~~~v~~~Id~e~A~~ 69 (94)
|+|++|++||.+|+|||||||+|+++.|.||.++|+. ++ ++++++++|||++|.+|+++ |-.+.|++
T Consensus 18 ~~v~~V~~p~~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~~~v~gGf~~v~~n~v~--Il~~~ae~ 86 (88)
T PRK13449 18 GEVDMVVVPGTEGDFGVLAGHAPFMTTLREGEVTVYSSDGAAPEVFHVQGGFAEVNEKGLT--ILAEHAVE 86 (88)
T ss_pred cEEEEEEEeCCccCeEEcCCCcceEEEeeceEEEEEECCCCeEEEEEEcceEEEEECCEEE--EEcceeEE
Confidence 6899999999999999999999999999999999985 44 46789999999999999988 55555543
No 19
>PRK06228 F0F1 ATP synthase subunit epsilon; Validated
Probab=99.89 E-value=1.7e-22 Score=137.18 Aligned_cols=59 Identities=15% Similarity=0.296 Sum_probs=56.0
Q ss_pred Cc-eEEEEEecCceeeeeccCCcceeeeecceEEEEEe-CCeEEEEEeCccEEEEeCCeEe
Q 041201 1 ME-IDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHE-GNEVIKYFISSGFALIHTNSYA 59 (94)
Q Consensus 1 g~-v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~-~~~~~~~~v~gGf~~v~~~~v~ 59 (94)
|+ |++|++||.+|+|||||||+|+++.|.||.++|+. ++++++|+|+|||++|.+|+++
T Consensus 17 g~~v~~V~lpt~~G~~GILp~H~p~it~L~~G~l~i~~~~~~~~~~av~gGf~ev~~n~V~ 77 (131)
T PRK06228 17 KKGVTRIVAETREGSFGLLPHRLDCVAALVPGILVYETEAEGEVYVAVDEGILVKTGPDVL 77 (131)
T ss_pred CCcEEEEEEEcCccCeEECCCCcceEeeecceEEEEEECCCcEEEEEEcceEEEEECCEEE
Confidence 56 99999999999999999999999999999999986 7778899999999999999998
No 20
>PRK13447 F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.89 E-value=1e-22 Score=139.06 Aligned_cols=71 Identities=18% Similarity=0.266 Sum_probs=62.1
Q ss_pred ceEEEEEecCceeeeeccCCcceeeeecceEEEEEe-CCeEEEEEeCccEEEEe-CCeEe---------EecccccchhH
Q 041201 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHE-GNEVIKYFISSGFALIH-TNSYA---------EIIAVEAPSTN 70 (94)
Q Consensus 2 ~v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~-~~~~~~~~v~gGf~~v~-~~~v~---------~~Id~e~A~~~ 70 (94)
++.+|.+||.+|+|||||||+|+++.|.||+++|+. ++++++++|+|||++|. +|+++ ++||..+|+-+
T Consensus 17 ~v~~V~~~t~~G~~GILp~HaPlit~L~~G~l~i~~~~g~~~~~aVsGGfleV~~~n~V~Ilad~ae~~edID~~~a~i~ 96 (136)
T PRK13447 17 DIVSLRAEDASGGFGILPGHADFLTVLRASVVRWRRADGATHYCAVRGGVLRVTGGARVEIACREAVLGEDLARLEAVVR 96 (136)
T ss_pred cEEEEEecCCcCceEEcCCCcceEeEecceEEEEEECCCcEEEEEEeCcEEEEecCCEEEEEeceeEchhhcCHHHHHHH
Confidence 489999999999999999999999999999999986 67788899999999999 89887 67886665543
Q ss_pred HH
Q 041201 71 LE 72 (94)
Q Consensus 71 ~~ 72 (94)
..
T Consensus 97 ~~ 98 (136)
T PRK13447 97 AV 98 (136)
T ss_pred HH
Confidence 33
No 21
>PRK13442 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.89 E-value=6.9e-23 Score=130.83 Aligned_cols=66 Identities=29% Similarity=0.523 Sum_probs=59.5
Q ss_pred CceEEEEEecCceeeeeccCCcceeeeecceEEEEEe-CCeEEEEEeCccEEEEeCCeEeEecccccch
Q 041201 1 MEIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHE-GNEVIKYFISSGFALIHTNSYAEIIAVEAPS 68 (94)
Q Consensus 1 g~v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~-~~~~~~~~v~gGf~~v~~~~v~~~Id~e~A~ 68 (94)
|+|++|++||.+|+|||||||+|+++.|.||.++|+. ++++++|+++|||+++.+|+++ |-.+.|+
T Consensus 20 ~~v~~V~~p~~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~~v~gG~~~v~~n~v~--Il~~~ae 86 (89)
T PRK13442 20 GEATMVVARTTEGDIGILPGHEPLLGVLESGTVTVVTPGGERISAAVDGGFISFDSNKLT--VLAERAE 86 (89)
T ss_pred ceeEEEEEECCcCCcEecCCCcCeEEEEcceEEEEEECCCcEEEEEEccEEEEEECCEEE--EEEeEEE
Confidence 6899999999999999999999999999999999986 7788899999999999999987 5444443
No 22
>PF02823 ATP-synt_DE_N: ATP synthase, Delta/Epsilon chain, beta-sandwich domain; InterPro: IPR020546 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta (in mitochondrial ATPase) or epsilon (in bacteria or chloroplast ATPase). The interaction site of subunit C of the F0 complex with the delta or epsilon subunit of the F1 complex may be important for connecting the rotor of F1 (gamma subunit) to the rotor of F0 (C subunit) []. In bacterial species, the delta subunit is the equivalent of the Oligomycin sensitive subunit (OSCP, IPR000711 from INTERPRO) in metazoans. The C-terminal domain of the epsilon subunit appears to act as an inhibitor of ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 2WSS_H 1E79_H 2JDI_H 2W6I_H 2W6H_H 2W6J_H 2CK3_H 2V7Q_H 1H8E_H 2XND_H ....
Probab=99.87 E-value=8.7e-22 Score=122.80 Aligned_cols=59 Identities=32% Similarity=0.639 Sum_probs=55.2
Q ss_pred CceEEEEEecCceeeeeccCCcceeeeecceEEEEEe-CCeEEEEEeCccEEEEeCCeEe
Q 041201 1 MEIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHE-GNEVIKYFISSGFALIHTNSYA 59 (94)
Q Consensus 1 g~v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~-~~~~~~~~v~gGf~~v~~~~v~ 59 (94)
++|++|++||.+|+|||||||+|+++.|.||.++|+. ++++++++++|||+++.+|+++
T Consensus 15 ~~v~~v~~~t~~G~~gIl~~H~p~i~~l~~G~~~i~~~~~~~~~~~v~~G~~~v~~n~v~ 74 (80)
T PF02823_consen 15 GEVESVVLPTTDGEFGILPNHAPFITALKPGELRIKDADGEEKKFAVSGGFLEVKDNEVT 74 (80)
T ss_dssp EEESEEEEEBSSSEEEEETTS-SEEEEEESEEEEEEESSSEEEEEEESSEEEEEETSEEE
T ss_pred eEEEEEEEECCCcChhhccCCchhheeccceEEEEEEcCCCEEEEEEcCEEEEEECCEEE
Confidence 4799999999999999999999999999999999994 7889999999999999999997
No 23
>PF00401 ATP-synt_DE: ATP synthase, Delta/Epsilon chain, long alpha-helix domain; InterPro: IPR020547 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta (in mitochondrial ATPase) or epsilon (in bacteria or chloroplast ATPase). The interaction site of subunit C of the F0 complex with the delta or epsilon subunit of the F1 complex may be important for connecting the rotor of F1 (gamma subunit) to the rotor of F0 (C subunit) []. In bacterial species, the delta subunit is the equivalent of the Oligomycin sensitive subunit (OSCP, IPR000711 from INTERPRO) in metazoans. The C-terminal domain of the epsilon subunit appears to act as an inhibitor of ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OAA_P 1BSN_A 1FS0_E 1AQT_A 1BSH_A 2RQ7_A 2RQ6_A 2E5Y_A 2QE7_H 2E5T_A ....
Probab=95.45 E-value=0.0055 Score=34.69 Aligned_cols=19 Identities=32% Similarity=0.338 Sum_probs=18.1
Q ss_pred EecccccchhHHHHHHHHh
Q 041201 60 EIIAVEAPSTNLEKAEAQI 78 (94)
Q Consensus 60 ~~Id~e~A~~~~~rAe~~l 78 (94)
++||+++|+.++++|+++|
T Consensus 1 ~dID~~rA~~a~~~Ae~~l 19 (48)
T PF00401_consen 1 EDIDEERAEEAKERAEERL 19 (48)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHH
Confidence 4799999999999999999
No 24
>PRK10579 hypothetical protein; Provisional
Probab=68.23 E-value=21 Score=23.02 Aligned_cols=56 Identities=14% Similarity=0.071 Sum_probs=40.4
Q ss_pred CceEEEEEecCcee---eeecc-------CCcceeeeecceEEEEEeCC--eEEEEEeCccEEEEeCCe
Q 041201 1 MEIDKIIIPSTTGL---MSVLP-------GHASIIAVLKSGVLSVHEGN--EVIKYFISSGFALIHTNS 57 (94)
Q Consensus 1 g~v~~V~~~t~~G~---~gILp-------~H~p~it~L~~G~l~i~~~~--~~~~~~v~gGf~~v~~~~ 57 (94)
|+|.|..+-..+|. +|||. -+.|-+..+..|.++++-.+ +|+. +-.|--.+|..|.
T Consensus 10 Gkv~S~~~~~~dG~~kTlGVm~pGey~F~T~~~E~MeivsG~l~V~Lpg~~ew~~-~~aG~sF~Vpans 77 (94)
T PRK10579 10 GKVKSIGFDSSSTGRASVGVMAEGEYTFSTAEPEEMTVISGALNVLLPGATDWQV-YEAGEVFNVPGHS 77 (94)
T ss_pred CeEEEEEEEcCCCCeeEEEEEeeeEEEEcCCCcEEEEEEeeEEEEECCCCcccEE-eCCCCEEEECCCC
Confidence 67888888888865 67653 47888889999999998644 3443 4466667776664
No 25
>COG3070 TfoX Regulator of competence-specific genes [Transcription]
Probab=66.11 E-value=3.3 Score=27.66 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=30.4
Q ss_pred EEEEEecCceeeeeccCCcceeeeecceEEEEEeCC
Q 041201 4 DKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGN 39 (94)
Q Consensus 4 ~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~~~ 39 (94)
-.|+.+.--|.+|++ .+-+|++.+.-|.+.++.++
T Consensus 19 G~v~~R~mFGgygly-~~~~m~alv~~~~l~lk~~~ 53 (121)
T COG3070 19 GAVTYRSMFGGYGLY-VDGTMFALVSDGELYLKADE 53 (121)
T ss_pred CceeehhhcCcccee-ccCceEEEEEccEEEEeech
Confidence 357888999999999 88999999999999998643
No 26
>COG1795 Formaldehyde-activating enzyme nesessary for methanogenesis [Energy production and conversion]
Probab=47.66 E-value=9 Score=27.09 Aligned_cols=15 Identities=33% Similarity=0.731 Sum_probs=13.0
Q ss_pred cCCcceeeeecceEE
Q 041201 19 PGHASIIAVLKSGVL 33 (94)
Q Consensus 19 p~H~p~it~L~~G~l 33 (94)
.||.|+++.|+|++.
T Consensus 43 ~GhtPllavlrPNl~ 57 (170)
T COG1795 43 QGHTPLLAVLRPNLA 57 (170)
T ss_pred cCCCceEEEecCCCC
Confidence 489999999999864
No 27
>PF01797 Y1_Tnp: Transposase IS200 like; InterPro: IPR002686 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This entry represents a domain found in transposases for IS200 from Escherichia coli []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2F5G_B 2F4F_B 2EC2_F 2XM3_C 2XQC_D 2XO6_A 2XMA_E 2VJV_B 2VIH_B 2VJU_A ....
Probab=38.96 E-value=20 Score=22.55 Aligned_cols=19 Identities=16% Similarity=0.426 Sum_probs=14.8
Q ss_pred eeeeccCCcceeeeecceE
Q 041201 14 LMSVLPGHASIIAVLKSGV 32 (94)
Q Consensus 14 ~~gILp~H~p~it~L~~G~ 32 (94)
.+.+||||.-++..+.|..
T Consensus 44 ~~~vm~nHvHllv~~~~~~ 62 (121)
T PF01797_consen 44 AFVVMPNHVHLLVSIPPKQ 62 (121)
T ss_dssp EEEEETTEEEEEEEE-TTS
T ss_pred eecccCcccceeeeecccc
Confidence 3789999999999887753
No 28
>PHA02106 hypothetical protein
Probab=38.08 E-value=10 Score=23.80 Aligned_cols=15 Identities=13% Similarity=0.328 Sum_probs=11.7
Q ss_pred EEEecCceeeeeccC
Q 041201 6 IIIPSTTGLMSVLPG 20 (94)
Q Consensus 6 V~~~t~~G~~gILp~ 20 (94)
|---|.||+||.+|.
T Consensus 35 vky~s~dgefg~~ps 49 (91)
T PHA02106 35 VKYLTFDGEFGLVPS 49 (91)
T ss_pred EEEEEecccccCchh
Confidence 445688999998885
No 29
>PF04795 PAPA-1: PAPA-1-like conserved region; InterPro: IPR006880 This is a group of proteins with a conserved C-terminal region which is found in PAPA-1, a PAP-1 binding protein, Q9C086 from SWISSPROT.
Probab=34.07 E-value=48 Score=20.81 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=23.6
Q ss_pred ccchhHHHHHHHHhhhhHHHHHHHhhccC
Q 041201 65 EAPSTNLEKAEAQIGVDVHVALNSALTGK 93 (94)
Q Consensus 65 e~A~~~~~rAe~~l~~~~~~a~~~a~~~~ 93 (94)
|.|+..+..++.+++.+..+++..-|+.+
T Consensus 8 E~ArkRk~~~eKk~EEeK~eTInKLLkkq 36 (89)
T PF04795_consen 8 ENARKRKNQSEKKLEEEKMETINKLLKKQ 36 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55788888899999999888888877653
No 30
>COG3779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.03 E-value=74 Score=22.10 Aligned_cols=43 Identities=12% Similarity=0.172 Sum_probs=31.5
Q ss_pred cCceeeeeccCCcceeeeecce-EEEEEeCCeEEEEEeCccEEE
Q 041201 10 STTGLMSVLPGHASIIAVLKSG-VLSVHEGNEVIKYFISSGFAL 52 (94)
Q Consensus 10 t~~G~~gILp~H~p~it~L~~G-~l~i~~~~~~~~~~v~gGf~~ 52 (94)
+--+-+|||.|---.++.+.-| .+.|..++-..+.+++||...
T Consensus 80 ~~~~f~GVl~NePgevtNVe~Gqsv~v~~dDISDWmy~~gg~~y 123 (151)
T COG3779 80 DGLYFYGVLNNEPGEVTNVEQGQSVCVPVDDISDWMYVCGGIPY 123 (151)
T ss_pred cCcEEEEEEcCCCceeeeeecCcEEEEehhhhhhhheeeCCEee
Confidence 3346689999998888888888 466666665666777777653
No 31
>smart00523 DWA Domain A in dwarfin family proteins.
Probab=33.89 E-value=51 Score=21.70 Aligned_cols=30 Identities=13% Similarity=-0.003 Sum_probs=24.1
Q ss_pred cccchhHHHHHHHHhhhhHHHHHHHhhccC
Q 041201 64 VEAPSTNLEKAEAQIGVDVHVALNSALTGK 93 (94)
Q Consensus 64 ~e~A~~~~~rAe~~l~~~~~~a~~~a~~~~ 93 (94)
...++++.+..-++|+....+.|..|++.+
T Consensus 3 ek~~~k~~~sL~KklK~k~le~L~~AV~s~ 32 (109)
T smart00523 3 EKWAKKATESLLKKLKKKQLEELLQAVESK 32 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455777888888888888999999999854
No 32
>COG0147 TrpE Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=33.75 E-value=53 Score=26.57 Aligned_cols=67 Identities=10% Similarity=0.011 Sum_probs=46.2
Q ss_pred cCCcceeeeecceEEEEEeCCeEEEEEeCccEEEEeCCeEe------Eecccccc----hhHHHHHHHHhhhhHHHH
Q 041201 19 PGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYA------EIIAVEAP----STNLEKAEAQIGVDVHVA 85 (94)
Q Consensus 19 p~H~p~it~L~~G~l~i~~~~~~~~~~v~gGf~~v~~~~v~------~~Id~e~A----~~~~~rAe~~l~~~~~~a 85 (94)
-|=+|++.-+.-|-..+...+-+..+.+.++.++..|=.-| .+.|.+.+ .+.|+|||-.|-+++.|-
T Consensus 239 ~NPspY~~~~~~~~~~lvg~SPE~~v~v~~~~i~t~PIaGT~~Rg~~~~eD~~~~~~Ll~d~KE~AEh~MlVDL~RN 315 (462)
T COG0147 239 RNPSPYMFFLRLGDFTLVGASPELFVKVDGNRIETRPIAGTRPRGADPEEDEALEAELLNDEKERAEHLMLVDLARN 315 (462)
T ss_pred cCCCcceeEEEcCCeEEEEechhhheEEeCCEEEEccccccCcCCCChhhHHHHHHHHhcChHHHHHHHHHHHHHhh
Confidence 46788888888887776655555566788887777664444 33444443 367999999998887764
No 33
>PRK15465 pabB aminodeoxychorismate synthase subunit I; Provisional
Probab=29.48 E-value=65 Score=26.11 Aligned_cols=70 Identities=10% Similarity=-0.065 Sum_probs=47.1
Q ss_pred CCcceeeeecceEEEEEeCCeEEEEEeCccEEEEeCCeEe------Eeccccc----chhHHHHHHHHhhhhHHHHHHHh
Q 041201 20 GHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYA------EIIAVEA----PSTNLEKAEAQIGVDVHVALNSA 89 (94)
Q Consensus 20 ~H~p~it~L~~G~l~i~~~~~~~~~~v~gGf~~v~~~~v~------~~Id~e~----A~~~~~rAe~~l~~~~~~a~~~a 89 (94)
|.+|+...+..+...|...+-++.+.+.||.++..+=.-| .+-|.+. ..+.|+|||-.|-++..|--+.-
T Consensus 237 npspy~~~~~~~~~~~igaSPE~ll~~~~~~v~t~PIaGT~~Rg~~~~eD~~~~~~Ll~s~Ke~aEh~MiVDl~RnDL~r 316 (453)
T PRK15465 237 NRAPFSAFLRLEQGAILSLSPERFILCDNSEIQTRPIKGTLPRLPDPQEDSKQAEKLANSAKDRAENLMIVDLMRNDIGR 316 (453)
T ss_pred CCCCeEEEEECCCCEEEEeCchhhEEEeCCEEEEEecccCcCCCCCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhh
Confidence 7788888888776555544445667788888888765444 1222222 35899999999988877765543
No 34
>COG1943 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=29.47 E-value=33 Score=23.02 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=15.9
Q ss_pred eeeeccCCcceeeeecceE
Q 041201 14 LMSVLPGHASIIAVLKSGV 32 (94)
Q Consensus 14 ~~gILp~H~p~it~L~~G~ 32 (94)
+|-+||+|.=++-.+.|..
T Consensus 52 a~~v~pdHVHlli~~pp~~ 70 (136)
T COG1943 52 AMEVMPDHVHLLITLPPKD 70 (136)
T ss_pred EEEecCCEEEEEEecCCCC
Confidence 5789999999999988753
No 35
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=28.67 E-value=1.1e+02 Score=16.72 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=16.9
Q ss_pred CcceeeeecceEE-EEEe-CCeEEEEE
Q 041201 21 HASIIAVLKSGVL-SVHE-GNEVIKYF 45 (94)
Q Consensus 21 H~p~it~L~~G~l-~i~~-~~~~~~~~ 45 (94)
++|.++.|.+|.+ ++.. .++|.++-
T Consensus 14 ~~~vv~~l~~g~~v~v~~~~~~W~~V~ 40 (55)
T PF06347_consen 14 NSPVVARLEPGVPVRVIECRGGWCKVR 40 (55)
T ss_pred CCCEEEEECCCCEEEEEEccCCeEEEE
Confidence 6788899999954 4443 55666555
No 36
>COG1863 MnhE Multisubunit Na+/H+ antiporter, MnhE subunit [Inorganic ion transport and metabolism]
Probab=27.97 E-value=1.8e+02 Score=20.27 Aligned_cols=18 Identities=22% Similarity=0.115 Sum_probs=9.0
Q ss_pred HHHHHHHhhhhHHHHHHH
Q 041201 71 LEKAEAQIGVDVHVALNS 88 (94)
Q Consensus 71 ~~rAe~~l~~~~~~a~~~ 88 (94)
.+++.+.++....+.+..
T Consensus 138 ~~~~~~~I~~~~E~~l~e 155 (158)
T COG1863 138 KEAARESIKNRFEKYLKE 155 (158)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 445555555555554443
No 37
>PF08714 Fae: Formaldehyde-activating enzyme (Fae); InterPro: IPR014826 This family consists of formaldehyde-activating enzyme, or the corresponding domain of longer, bifunctional proteins. It links formaldehyde to the C1 carrier tetrahydromethanopterin (H4MPT), an analog of tetrahydrofolate, and is common among species with H4MPT []. The ribulose monophosphate (RuMP) pathway, which removes the toxic metabolite formaldehyde by assimilation, runs in the opposite direction in some species to produce ribulose 5-phosphate for nucleotide biosynthesis, leaving formaldehyde as an additional metabolite. In these species, formaldehyde activating enzyme may occur as a fusion protein with D-arabino 3-hexulose 6-phosphate formaldehyde lyase from the RuMP pathway.; GO: 0016840 carbon-nitrogen lyase activity, 0016051 carbohydrate biosynthetic process; PDB: 1Y60_A 1Y5Y_D.
Probab=26.70 E-value=38 Score=23.93 Aligned_cols=15 Identities=33% Similarity=0.718 Sum_probs=10.8
Q ss_pred cCCcceeeeecceEE
Q 041201 19 PGHASIIAVLKSGVL 33 (94)
Q Consensus 19 p~H~p~it~L~~G~l 33 (94)
.||.|+++.|.|..+
T Consensus 39 ~Ght~llAv~~pNl~ 53 (159)
T PF08714_consen 39 AGHTPLLAVLRPNLP 53 (159)
T ss_dssp TTB-EEE-EEETTEE
T ss_pred CCCcceEEEecCCCC
Confidence 689999999988754
No 38
>PLN02445 anthranilate synthase component I
Probab=26.21 E-value=1.7e+02 Score=24.32 Aligned_cols=69 Identities=9% Similarity=-0.101 Sum_probs=44.3
Q ss_pred CCcceeeeecceEEEEEeCCeEEEEEeCccEEEEeCCeEe------Eecccc----cchhHHHHHHHHhhhhHHHHHHH
Q 041201 20 GHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYA------EIIAVE----APSTNLEKAEAQIGVDVHVALNS 88 (94)
Q Consensus 20 ~H~p~it~L~~G~l~i~~~~~~~~~~v~gGf~~v~~~~v~------~~Id~e----~A~~~~~rAe~~l~~~~~~a~~~ 88 (94)
|.+|++..+..+-..+-..+-+..+.+.+|.++..+=.-| .+-|.. -..+.|+|||-.|-++..|--+.
T Consensus 282 nPspy~~~l~~~~~~ivgaSPE~lv~~~~~~v~t~PIAGT~~Rg~~~~eD~~l~~eLl~s~KeraEh~MvVDl~RnDL~ 360 (523)
T PLN02445 282 NPSPYMIYLQARGCILVASSPEILTRVKKNKIVNRPLAGTRRRGKTPEEDKALEKDLLADEKQCAEHIMLVDLGRNDVG 360 (523)
T ss_pred CCCCeEEEEeCCCcEEEeeccceeEEEECCEEEEeccccccCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 5678887777766555444445566677887777664333 112221 14589999999998887776444
No 39
>PRK13570 anthranilate synthase component I; Provisional
Probab=25.34 E-value=1.2e+02 Score=24.62 Aligned_cols=69 Identities=12% Similarity=-0.035 Sum_probs=44.8
Q ss_pred CCcceeeeecceEEEEEeCCeEEEEEeCccEEEEeCCeEe------Eeccccc----chhHHHHHHHHhhhhHHHHHHH
Q 041201 20 GHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYA------EIIAVEA----PSTNLEKAEAQIGVDVHVALNS 88 (94)
Q Consensus 20 ~H~p~it~L~~G~l~i~~~~~~~~~~v~gGf~~v~~~~v~------~~Id~e~----A~~~~~rAe~~l~~~~~~a~~~ 88 (94)
|.+|++..+..|-..+...+-++.+.+.+|.++..+=.-| .+-|... ..+.|++||-.|-++..|.-+.
T Consensus 241 nP~py~~~~~~~~~~~~gaSPE~l~~~~~~~v~t~piaGT~~Rg~~~~eD~~l~~~Ll~s~Ke~aEh~mvVDl~rndL~ 319 (455)
T PRK13570 241 NPSPYLYYIDFGDYQVIGSSPESLVSVKGDKVTTNPIAGTRPRGKTKEEDEALAKELLSDEKERAEHRMLVDLGRNDIG 319 (455)
T ss_pred CCCCeEEEEECCCCEEEEeCchhhEEEeCCEEEEecccCCcCCCCChHHhHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 6788888887765555544445566778888777764443 1122222 3588999999998887765443
No 40
>PRK12596 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=24.80 E-value=46 Score=23.24 Aligned_cols=10 Identities=10% Similarity=0.185 Sum_probs=6.8
Q ss_pred ecceEEEEEe
Q 041201 28 LKSGVLSVHE 37 (94)
Q Consensus 28 L~~G~l~i~~ 37 (94)
++||.+++..
T Consensus 88 i~PgiV~vpl 97 (171)
T PRK12596 88 RHPGFVVIPL 97 (171)
T ss_pred CCCeEEEEec
Confidence 6677777764
No 41
>PF10150 RNase_E_G: Ribonuclease E/G family; InterPro: IPR019307 Ribonuclease E and Ribonuclease G are related enzymes that cleave a wide variety of RNAs []. RNA-binding protein AU-1 binds to RNA loop regions that are with AU-rich sequences [].; PDB: 2BX2_L 2VRT_D 2VMK_D 2C4R_L 1SMX_B 1SLJ_A 2C0B_L 1SN8_B.
Probab=24.30 E-value=1.3e+02 Score=22.37 Aligned_cols=27 Identities=19% Similarity=0.412 Sum_probs=15.7
Q ss_pred EEEe-CccEEEEeCCeEeEecccccchh
Q 041201 43 KYFI-SSGFALIHTNSYAEIIAVEAPST 69 (94)
Q Consensus 43 ~~~v-~gGf~~v~~~~v~~~Id~e~A~~ 69 (94)
++.+ +||++.+.+.+....||++..+.
T Consensus 160 ~v~l~~Gg~l~Ie~TeAlt~IDVNsg~~ 187 (271)
T PF10150_consen 160 RVWLPSGGYLVIEQTEALTVIDVNSGKY 187 (271)
T ss_dssp EEE-TTS-EEEEEE-SS-EEEEEE----
T ss_pred eEEeCCCeEEEEecCceEEEEEecCCCC
Confidence 3444 89999999888777899988654
No 42
>COG4871 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.10 E-value=1.5e+02 Score=21.33 Aligned_cols=58 Identities=14% Similarity=0.110 Sum_probs=29.1
Q ss_pred cCCcceeeeecceEEEEEeCCeEEEEEe--------CccEEEEeCCeEeEecccccchhHHHHHHHHhhhhH
Q 041201 19 PGHASIIAVLKSGVLSVHEGNEVIKYFI--------SSGFALIHTNSYAEIIAVEAPSTNLEKAEAQIGVDV 82 (94)
Q Consensus 19 p~H~p~it~L~~G~l~i~~~~~~~~~~v--------~gGf~~v~~~~v~~~Id~e~A~~~~~rAe~~l~~~~ 82 (94)
++-.|+++.|-|- ..+.+...+..+.. .+|++.++. .-|++.|++.+...+.+++...
T Consensus 45 g~ilplla~l~P~-anY~~kk~~l~~~kgerIitiy~sGkVsm~~-----ikdedEAkeilgel~d~ineA~ 110 (193)
T COG4871 45 GGILPLLAPLFPR-ANYSDKKNILILQKGERIITIYGSGKVSMTM-----IKDEDEAKEILGELMDIINEAI 110 (193)
T ss_pred chhHHHhHhhCCC-cccccccceEEEeeccEEEEEccCCeEEeee-----ecCHHHHHHHHHHHHHHHHHHH
Confidence 3455666666664 33322112222222 355555442 2466777777766666665443
No 43
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=23.59 E-value=2.1e+02 Score=18.37 Aligned_cols=57 Identities=23% Similarity=0.232 Sum_probs=34.8
Q ss_pred CceEEEEEecCcee---eeec-cC------CcceeeeecceEEEEEeCC--eEEEEEeCccEEEEeCCeE
Q 041201 1 MEIDKIIIPSTTGL---MSVL-PG------HASIIAVLKSGVLSVHEGN--EVIKYFISSGFALIHTNSY 58 (94)
Q Consensus 1 g~v~~V~~~t~~G~---~gIL-p~------H~p~it~L~~G~l~i~~~~--~~~~~~v~gGf~~v~~~~v 58 (94)
|+|.|..+-..+|. +||| |+ +.|-+..+..|.+.++-.+ +|+. +-.|-..+|..|.-
T Consensus 10 GkV~S~~~~~~dG~~~TlGVm~pGeY~F~T~~~E~M~vvsG~l~V~lpg~~ew~~-~~aGesF~Vpanss 78 (94)
T PF06865_consen 10 GKVKSITFEFADGSKKTLGVMLPGEYTFGTSAPERMEVVSGELEVKLPGEDEWQT-YSAGESFEVPANSS 78 (94)
T ss_dssp CTEEEEEEEETTSEEEEEEEE-SECEEEEESS-EEEEEEESEEEEEETT-SS-EE-EETT-EEEE-TTEE
T ss_pred CeEEEEEEEcCCCCcceEEEEeeeEEEEcCCCCEEEEEEEeEEEEEcCCCcccEE-eCCCCeEEECCCCe
Confidence 67899999888854 4554 33 5666777778888887533 3443 34666666666643
No 44
>PF03315 SDH_beta: Serine dehydratase beta chain; InterPro: IPR005131 L-serine dehydratase is found as a heterodimer of alpha and beta chain or as a fusion of the two chains in a single protein. This enzyme catalyses the deamination of serine to form pyruvate and is part of the gluconeogenesis pathway.; GO: 0003941 L-serine ammonia-lyase activity, 0051539 4 iron, 4 sulfur cluster binding, 0006094 gluconeogenesis; PDB: 2IQQ_A 2IAF_A.
Probab=23.57 E-value=91 Score=21.47 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=12.7
Q ss_pred EEEEEeCccEEEEeCC
Q 041201 41 VIKYFISSGFALIHTN 56 (94)
Q Consensus 41 ~~~~~v~gGf~~v~~~ 56 (94)
+.+|.|.|||+.....
T Consensus 140 ~t~ySIGGGfI~~~~~ 155 (157)
T PF03315_consen 140 ETYYSIGGGFIVIEEE 155 (157)
T ss_dssp EEEEEETTTEEEETTT
T ss_pred EEEEEeCCeEEEEeee
Confidence 4578899999998653
No 45
>PRK13567 anthranilate synthase component I; Provisional
Probab=22.89 E-value=1.5e+02 Score=24.06 Aligned_cols=71 Identities=10% Similarity=-0.063 Sum_probs=47.0
Q ss_pred cCCcceeeeecceEEEEEeCCeEEEEEeCccEEEEeCCeEe------Eeccccc----chhHHHHHHHHhhhhHHHHHHH
Q 041201 19 PGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYA------EIIAVEA----PSTNLEKAEAQIGVDVHVALNS 88 (94)
Q Consensus 19 p~H~p~it~L~~G~l~i~~~~~~~~~~v~gGf~~v~~~~v~------~~Id~e~----A~~~~~rAe~~l~~~~~~a~~~ 88 (94)
.+-+|++..+..|-..+...+-++.+.+.+|.++..+=.-| .+-|.+. ..+.|+|||-.|-++..|--+.
T Consensus 252 ~npspy~~~~~~~~~~~~gaSPE~l~~~~~~~v~t~pIaGT~~Rg~~~~eD~~~~~~Ll~s~Ke~aEh~mvVDl~Rndl~ 331 (468)
T PRK13567 252 QNPSPYMYYLNIDQPYIVGSSPESFVSVKDQIVTTNPIAGTIQRGETTQIDNENMKQLLNDPKECSEHRMLVDLGRNDIH 331 (468)
T ss_pred hCCCCeEEEEECCCCEEEEeCchhhEEeeCCEEEEEcCCCCCCCCCCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 37789999888876666554445666778888887764444 1222221 4588999999998876665444
Q ss_pred h
Q 041201 89 A 89 (94)
Q Consensus 89 a 89 (94)
.
T Consensus 332 ~ 332 (468)
T PRK13567 332 R 332 (468)
T ss_pred h
Confidence 3
No 46
>PRK15023 L-serine deaminase; Provisional
Probab=21.93 E-value=1.9e+02 Score=23.64 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=17.4
Q ss_pred cceEEEEE--eCC----eEEEEEeCccEEEEe
Q 041201 29 KSGVLSVH--EGN----EVIKYFISSGFALIH 54 (94)
Q Consensus 29 ~~G~l~i~--~~~----~~~~~~v~gGf~~v~ 54 (94)
-|--++|+ .++ ++.+|.|.|||+...
T Consensus 123 HPN~m~f~a~~~~~~~~e~~~ySIGGGfI~~~ 154 (454)
T PRK15023 123 HENGMQIHAYNGDEVVYSKTYYSIGGGFIVDE 154 (454)
T ss_pred CCCeeEEEEEeCCCcEEEEEEEEcCCceeeec
Confidence 45555554 222 456788999999987
No 47
>COG1667 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.56 E-value=2.1e+02 Score=21.63 Aligned_cols=43 Identities=14% Similarity=0.212 Sum_probs=27.8
Q ss_pred eeeeeccC--CcceeeeecceEEEEEe-CCeEEEEEeCccEEEEeCCeEe
Q 041201 13 GLMSVLPG--HASIIAVLKSGVLSVHE-GNEVIKYFISSGFALIHTNSYA 59 (94)
Q Consensus 13 G~~gILp~--H~p~it~L~~G~l~i~~-~~~~~~~~v~gGf~~v~~~~v~ 59 (94)
++.|-+.. -.-+++.|..|.++|+. .++ .++.+|+.|.++++.
T Consensus 12 ~~v~s~~e~~le~iv~~l~TG~v~it~r~ge----~l~ea~i~V~~GkIV 57 (254)
T COG1667 12 MYVGSLNERKLEEIVLSLSTGYVRITIRIGE----NLNEAFIFVEGGKIV 57 (254)
T ss_pred cccccchhhhHHHHHhhccceeEEEEEecCc----cccceEEEEECCEEE
Confidence 55555555 55678889999999974 333 234555566666655
No 48
>PF09650 PHA_gran_rgn: Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn); InterPro: IPR013433 Proteins in this entry are encoded by genes involved in either polyhydroxyalkanoic acid (PHA) biosynthesis or utilisation, including proteins at found at the surface of PHA granules. These proteins have so far been predominantly found in the Pseudomonadales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=21.39 E-value=1.3e+02 Score=18.68 Aligned_cols=12 Identities=8% Similarity=0.066 Sum_probs=8.3
Q ss_pred ccEEEEeCCeEe
Q 041201 48 SGFALIHTNSYA 59 (94)
Q Consensus 48 gGf~~v~~~~v~ 59 (94)
.|.+.|.++.+.
T Consensus 48 ~G~l~V~~d~v~ 59 (87)
T PF09650_consen 48 DGTLDVADDHVR 59 (87)
T ss_pred eEEEEEcCCEEE
Confidence 567777777766
No 49
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=20.97 E-value=1e+02 Score=26.49 Aligned_cols=69 Identities=10% Similarity=-0.051 Sum_probs=46.8
Q ss_pred CCcceeeeecceEEEEEeCCeEEEEEeC-ccEEEEeCCeEe----Eeccccc----chhHHHHHHHHhhhhHHHHHHH
Q 041201 20 GHASIIAVLKSGVLSVHEGNEVIKYFIS-SGFALIHTNSYA----EIIAVEA----PSTNLEKAEAQIGVDVHVALNS 88 (94)
Q Consensus 20 ~H~p~it~L~~G~l~i~~~~~~~~~~v~-gGf~~v~~~~v~----~~Id~e~----A~~~~~rAe~~l~~~~~~a~~~ 88 (94)
|-+|+..-+..|...+...+-++.+.+. +|.++..+=.-| .+-|... ..+.|+|||-.|-++..|--+.
T Consensus 520 npapy~~~~~~~~~~~igaSPE~ll~~~~~~~v~t~PiaGT~~Rg~~~d~~~~~~Ll~~~Ke~aEh~miVDl~rndL~ 597 (742)
T TIGR01823 520 NPAPFSGFFRLKHIIFLSTSPEKFLEVGMDTHAKLRPIKGTVKKGPQMNLEKARRILKTPKEMGENLMILDLIRNDLY 597 (742)
T ss_pred CCCCeEEEEECCCCEEEEeChhHheEEccCCEEEEeCCCCCCCCCCCHhHHHHHHHhcChHHHHHHHHHHHHHHhhhh
Confidence 5588888888776666554455667788 888888875554 2222222 3588999999998887765443
No 50
>PRK08965 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=20.62 E-value=2.1e+02 Score=19.56 Aligned_cols=10 Identities=20% Similarity=0.331 Sum_probs=6.9
Q ss_pred ecceEEEEEe
Q 041201 28 LKSGVLSVHE 37 (94)
Q Consensus 28 L~~G~l~i~~ 37 (94)
++||++++..
T Consensus 90 i~P~iv~vp~ 99 (162)
T PRK08965 90 PRPGFVAVPL 99 (162)
T ss_pred CCCeEEEEee
Confidence 5677777764
Done!