Query 041201
Match_columns 94
No_of_seqs 176 out of 1019
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 07:38:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041201.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041201hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e5y_A ATP synthase epsilon ch 100.0 2.5E-29 8.7E-34 169.7 10.0 79 1-79 18-105 (133)
2 1aqt_A ATP synthase; hydrolase 100.0 8.2E-29 2.8E-33 168.1 10.5 79 1-79 18-106 (138)
3 2rq6_A ATP synthase epsilon ch 100.0 3.3E-29 1.1E-33 170.1 8.4 80 1-80 17-105 (138)
4 3oee_H ATP synthase subunit de 100.0 4.8E-30 1.6E-34 174.2 3.3 78 2-79 26-113 (138)
5 2xok_H ATP synthase; hydrolase 99.9 1E-28 3.5E-33 171.5 5.8 78 2-79 48-135 (160)
6 2ck3_H ATP synthase subunit de 99.9 3.2E-29 1.1E-33 171.6 -1.0 77 2-78 32-119 (146)
7 2qe7_H ATP synthase subunit ep 99.9 3.4E-29 1.2E-33 169.4 -2.1 80 1-80 18-106 (135)
8 2w6j_H F1-ATPase delta subunit 99.9 2.3E-28 8E-33 170.8 -1.0 77 2-78 54-141 (168)
9 1fmh_A General control protein 38.2 28 0.00094 17.2 2.3 28 67-94 4-31 (33)
10 3mr0_A Sensory box histidine k 35.6 52 0.0018 19.3 3.9 17 32-48 85-102 (142)
11 2f5g_A Transposase, putative; 34.6 14 0.00049 22.9 1.1 18 14-31 53-70 (133)
12 3h9m_A P-aminobenzoate synthet 32.2 1E+02 0.0035 23.8 5.8 71 20-90 209-289 (436)
13 2fyx_A Transposase, putative; 30.3 20 0.00068 22.8 1.3 18 14-31 63-80 (143)
14 3hqx_A UPF0345 protein aciad03 27.1 1.2E+02 0.0042 19.1 6.4 57 1-58 24-94 (111)
15 1qdl_A Protein (anthranilate s 25.4 68 0.0023 24.5 3.7 71 20-90 205-285 (422)
16 2vjv_A Transposase ORFA; DNA-b 23.8 30 0.001 22.3 1.3 18 14-31 61-78 (159)
17 4er8_A Tnparep for protein; pr 21.4 32 0.0011 22.6 1.1 18 14-31 52-69 (165)
18 1y60_A Formaldehyde-activating 21.3 37 0.0013 23.2 1.3 15 19-33 46-60 (169)
No 1
>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB: 2e5t_A 2e5u_A
Probab=99.96 E-value=2.5e-29 Score=169.66 Aligned_cols=79 Identities=22% Similarity=0.408 Sum_probs=75.8
Q ss_pred CceEEEEEecCceeeeeccCCcceeeeecceEEEEEeCCeEEEEEeCccEEEEeCCeEe---------EecccccchhHH
Q 041201 1 MEIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYA---------EIIAVEAPSTNL 71 (94)
Q Consensus 1 g~v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~v~gGf~~v~~~~v~---------~~Id~e~A~~~~ 71 (94)
|+|++|++||.+|+|||||||+|+++.|.||+++|+.++++++|+|+|||++|.+|.++ ++||.++|++++
T Consensus 18 ~~v~~V~~p~~~G~~GILp~H~p~it~L~~G~v~i~~~~~~~~~~v~gGf~ev~~~~vtIla~~A~~~~diD~~~a~~a~ 97 (133)
T 2e5y_A 18 DDVEMVSVKAKSGELGILPGHIPLVAPLEISAARLKKGGKTQYIAVSGGFLEVRPDKVTILAQAAERAEDIDVLRAKAAK 97 (133)
T ss_dssp EEESEEEEEETTEEEEECTTCCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEESSEEEGGGCCHHHHHHHH
T ss_pred ceEEEEEEECCcCCeEecCCCcceEeEecceEEEEEECCeEEEEEEcCeEEEEECCEEEEEEeEEEEhhhCCHHHHHHHH
Confidence 57999999999999999999999999999999999988889999999999999999998 799999999999
Q ss_pred HHHHHHhh
Q 041201 72 EKAEAQIG 79 (94)
Q Consensus 72 ~rAe~~l~ 79 (94)
+|||++|+
T Consensus 98 ~~Ae~~l~ 105 (133)
T 2e5y_A 98 ERAERRLQ 105 (133)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999994
No 2
>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A {Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J 1bsh_A 1bsn_A 1fs0_E 3oaa_H*
Probab=99.96 E-value=8.2e-29 Score=168.08 Aligned_cols=79 Identities=19% Similarity=0.374 Sum_probs=75.2
Q ss_pred CceEEEEEecCceeeeeccCCcceeeeecceEEEEEe-CCeEEEEEeCccEEEEeCCeEe---------EecccccchhH
Q 041201 1 MEIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHE-GNEVIKYFISSGFALIHTNSYA---------EIIAVEAPSTN 70 (94)
Q Consensus 1 g~v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~-~~~~~~~~v~gGf~~v~~~~v~---------~~Id~e~A~~~ 70 (94)
|+|++|++||.+|+|||||||+|+++.|.||+++|+. ++++++|+|+|||++|.+|.++ ++||.++|+++
T Consensus 18 ~~v~~V~~p~~~Ge~GILp~H~p~it~L~~G~v~i~~~~g~~~~~~v~gGf~ev~~~~vtIla~~A~~~~diD~~~a~~a 97 (138)
T 1aqt_A 18 GLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLADTAIRGQDLDEARAMEA 97 (138)
T ss_dssp EEEEEEEEEBSSSEEEECTTCCCEEEEECSEEEEEEETTTEEEEEEESSEEEEEETTEEEEEESSEEEGGGCCHHHHHHH
T ss_pred eeEEEEEEECCcCCeEecCCCcceEeEecceEEEEEECCCcEEEEEEeCcEEEEECCEEEEEEeeEEEhhhCCHHHHHHH
Confidence 5799999999999999999999999999999999986 7788999999999999999998 79999999999
Q ss_pred HHHHHHHhh
Q 041201 71 LEKAEAQIG 79 (94)
Q Consensus 71 ~~rAe~~l~ 79 (94)
+++||++|+
T Consensus 98 ~~~Ae~~l~ 106 (138)
T 1aqt_A 98 KRKAEEHIS 106 (138)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999994
No 3
>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A
Probab=99.96 E-value=3.3e-29 Score=170.09 Aligned_cols=80 Identities=28% Similarity=0.537 Sum_probs=76.1
Q ss_pred CceEEEEEecCceeeeeccCCcceeeeecceEEEEEeCCeEEEEEeCccEEEEeCCeEe---------EecccccchhHH
Q 041201 1 MEIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYA---------EIIAVEAPSTNL 71 (94)
Q Consensus 1 g~v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~v~gGf~~v~~~~v~---------~~Id~e~A~~~~ 71 (94)
|+|++|++||.+|+|||||||+|+++.|.||+++|+.++++++|+|+|||++|.+|.++ ++||.++|++++
T Consensus 17 ~~v~~V~~p~~~Ge~GILp~H~p~it~L~~G~v~i~~~~~~~~~~v~gGf~ev~~~~vtIla~~A~~~~dID~~~a~~a~ 96 (138)
T 2rq6_A 17 APAEEVILPSTTGQLGILSNHAPLLTALETGVMRVRQDREWVAIALMGGFAEVENNEVTILVNGAERGDTIDLEKAKAEF 96 (138)
T ss_dssp EEESEEEECCTTSCEEEESSCCSEEEEECSEEEEEESSSCEEEEEECSEEEEECSSCEEEEESCEECSTTCCHHHHHHHH
T ss_pred eeEEEEEEECCcCCeEEcCCCcceEeEeccEEEEEEECCeEEEEEEcCcEEEEECCEEEEEEeeEEEhhhCCHHHHHHHH
Confidence 57999999999999999999999999999999999988889999999999999999998 789999999999
Q ss_pred HHHHHHhhh
Q 041201 72 EKAEAQIGV 80 (94)
Q Consensus 72 ~rAe~~l~~ 80 (94)
+|||++|+.
T Consensus 97 ~~Ae~~l~~ 105 (138)
T 2rq6_A 97 AAAQAALAQ 105 (138)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999953
No 4
>3oee_H ATP synthase subunit delta; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_H* 3fks_H 2hld_H* 3oeh_H* 3ofn_H* 3zry_H* 3oe7_H* 4b2q_H*
Probab=99.96 E-value=4.8e-30 Score=174.22 Aligned_cols=78 Identities=29% Similarity=0.543 Sum_probs=72.3
Q ss_pred ceEEEEEecCceeeeeccCCcceeeeecceEEEEEeCCeEEEEEeCccEEEEeCC-eEe---------EecccccchhHH
Q 041201 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTN-SYA---------EIIAVEAPSTNL 71 (94)
Q Consensus 2 ~v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~v~gGf~~v~~~-~v~---------~~Id~e~A~~~~ 71 (94)
+|++|++||.+|+|||||||+|+|+.|.||+++|+.++++++|+|+|||++|.+| .++ ++||.++|++++
T Consensus 26 ~v~~V~~p~~~Ge~GILp~H~P~it~L~~G~v~i~~~g~~~~~~V~gGf~eV~~~~~v~Ila~~A~~~~eiD~~~A~~a~ 105 (138)
T 3oee_H 26 EVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLL 105 (138)
T ss_dssp CCSCEECCCSSSCCEECTTCCCCEEEECSEEEEECSSSCCEEEEECCEEEEECTTSCEEEECSCC-CCSSCC-CCSSSST
T ss_pred cEEEEEEECCcCCeEecCCCcceEeEecceEEEEEECCeEEEEEEcCeEEEEeCCCEEEEEeccccchhhCCHHHHHHHH
Confidence 7999999999999999999999999999999999877788999999999999987 676 899999999999
Q ss_pred HHHHHHhh
Q 041201 72 EKAEAQIG 79 (94)
Q Consensus 72 ~rAe~~l~ 79 (94)
+||+++|+
T Consensus 106 e~Ae~~l~ 113 (138)
T 3oee_H 106 AEAKKNVS 113 (138)
T ss_dssp THHHHHTS
T ss_pred HHHHHHHh
Confidence 99999983
No 5
>2xok_H ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1e-28 Score=171.50 Aligned_cols=78 Identities=29% Similarity=0.543 Sum_probs=72.3
Q ss_pred ceEEEEEecCceeeeeccCCcceeeeecceEEEEEeCCeEEEEEeCccEEEEeCC-eEe---------EecccccchhHH
Q 041201 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTN-SYA---------EIIAVEAPSTNL 71 (94)
Q Consensus 2 ~v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~v~gGf~~v~~~-~v~---------~~Id~e~A~~~~ 71 (94)
+|++|++||.+|+|||||||+|+++.|+||+++|+.++++++|+|+|||++|.+| .++ ++||.++|++++
T Consensus 48 ~v~~V~~p~~~Ge~GILp~H~Plit~L~~G~v~i~~~g~~~~~aV~gGf~eV~~~n~VtIla~~A~~~~dID~~~A~~a~ 127 (160)
T 2xok_H 48 EVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLL 127 (160)
T ss_dssp CCSEEEEECSSSEEEEESSCCCCEEEECSSCEEECSSSCCEEECCCCEEEEECTTSCEEEEESCC-CCTTTC-CHHHHHH
T ss_pred cEEEEEEECCccCeEecCCCccceeEecceEEEEEECCEEEEEEEcCeEEEEeCCCeEEEEeeeeEehhhCCHHHHHHHH
Confidence 7999999999999999999999999999999999877778999999999999987 787 799999999999
Q ss_pred HHHHHHhh
Q 041201 72 EKAEAQIG 79 (94)
Q Consensus 72 ~rAe~~l~ 79 (94)
++||++|+
T Consensus 128 ~~Ae~~l~ 135 (160)
T 2xok_H 128 AEAKKNVS 135 (160)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999883
No 6
>2ck3_H ATP synthase subunit delta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.2.10.1 b.93.1.1 PDB: 1e79_H* 1h8e_H* 2jdi_H* 2v7q_H* 2wss_H* 2xnd_H*
Probab=99.94 E-value=3.2e-29 Score=171.64 Aligned_cols=77 Identities=30% Similarity=0.620 Sum_probs=38.9
Q ss_pred ceEEEEEecCceeeeeccCCcceeeeecceEEEEEe-CCeEEEEEeCccEEEEeCC-eEe---------EecccccchhH
Q 041201 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHE-GNEVIKYFISSGFALIHTN-SYA---------EIIAVEAPSTN 70 (94)
Q Consensus 2 ~v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~-~~~~~~~~v~gGf~~v~~~-~v~---------~~Id~e~A~~~ 70 (94)
+|++|++||.+|+|||||||+|+|+.|+||+++|+. +++|++|+|+|||++|.+| +++ ++||.++|+++
T Consensus 32 ~v~~V~~p~~~Ge~GILp~H~P~it~L~~G~v~i~~~~g~~~~~~v~gGf~eV~~~~~VtIla~~A~~~~dID~~~A~~a 111 (146)
T 2ck3_H 32 NVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAKAN 111 (146)
T ss_dssp ---CCBCCC-----------------CCSBCCBC----------CBCSBC---------CEEBSSBCCSSSCCCSSHHHH
T ss_pred cEEEEEEECCccCeeccCCCcceEeEecceEEEEEECCCcEEEEEEeCCEEEEeCCCEEEEEeceeEehhhCCHHHHHHH
Confidence 699999999999999999999999999999999985 6778899999999999877 776 89999999999
Q ss_pred HHHHHHHh
Q 041201 71 LEKAEAQI 78 (94)
Q Consensus 71 ~~rAe~~l 78 (94)
++||+++|
T Consensus 112 ~~~Ae~~l 119 (146)
T 2ck3_H 112 LEKAQSEL 119 (146)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999998
No 7
>2qe7_H ATP synthase subunit epsilon; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP}
Probab=99.94 E-value=3.4e-29 Score=169.39 Aligned_cols=80 Identities=23% Similarity=0.367 Sum_probs=75.6
Q ss_pred CceEEEEEecCceeeeeccCCcceeeeecceEEEEEeCCeEEEEEeCccEEEEeCCeEe---------EecccccchhHH
Q 041201 1 MEIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYA---------EIIAVEAPSTNL 71 (94)
Q Consensus 1 g~v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~v~gGf~~v~~~~v~---------~~Id~e~A~~~~ 71 (94)
|+|++|++||.+|+|||||||+|+++.|.||+++|+.++++++|+|+|||++|.+|.++ ++||.++|++++
T Consensus 18 ~~v~~V~~p~~~Ge~GILp~H~p~it~L~~G~v~i~~~~~~~~~~v~gGf~ev~~~~vtIla~~A~~~~diD~~~a~~a~ 97 (135)
T 2qe7_H 18 GEADIVIARGVEGELGVMAGHIPLVTPLKTAPVRIKQGDKETLIAVSGGFLEVRPDKVNILADTAELPEEIDVERAKKAK 97 (135)
T ss_dssp SCCSCEEECBSSSCEEECSCCCCCCCCBCSSCCCBCTTSCCBCCBCCSCCEEECSSEEEECCSSCBCTTTSCHHHHHHHH
T ss_pred ceEEEEEEECCcCCeEecCCCcceEeEecceEEEEEECCeEEEEEEcCcEEEEECCEEEEEEeeeEEhhhCCHHHHHHHH
Confidence 67999999999999999999999999999999999877778899999999999999998 899999999999
Q ss_pred HHHHHHhhh
Q 041201 72 EKAEAQIGV 80 (94)
Q Consensus 72 ~rAe~~l~~ 80 (94)
++||++|+.
T Consensus 98 ~~Ae~~l~~ 106 (135)
T 2qe7_H 98 ARHETILKR 106 (135)
T ss_dssp HTTTTTTTT
T ss_pred HHHHHHHhh
Confidence 999999964
No 8
>2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+ transporting), transit peptide, F1FO ATP synthase, ATP phosphorylase; 3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H
Probab=99.93 E-value=2.3e-28 Score=170.79 Aligned_cols=77 Identities=30% Similarity=0.620 Sum_probs=38.9
Q ss_pred ceEEEEEecCceeeeeccCCcceeeeecceEEEEEe-CCeEEEEEeCccEEEEeCC-eEe---------EecccccchhH
Q 041201 2 EIDKIIIPSTTGLMSVLPGHASIIAVLKSGVLSVHE-GNEVIKYFISSGFALIHTN-SYA---------EIIAVEAPSTN 70 (94)
Q Consensus 2 ~v~~V~~~t~~G~~gILp~H~p~it~L~~G~l~i~~-~~~~~~~~v~gGf~~v~~~-~v~---------~~Id~e~A~~~ 70 (94)
+|++|++||.+|+|||||||+|+|+.|+||+++|+. +++|++|+|+|||++|.+| +|+ ++||.++|+++
T Consensus 54 ~V~~V~~p~~~Ge~GILp~H~Plit~L~~G~v~i~~~~g~~~~~~V~gGf~eV~~~n~VtIla~~A~~~~dID~~~A~~a 133 (168)
T 2w6j_H 54 NVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAKAN 133 (168)
T ss_dssp ---CCBCCC-----------------CCSBCCBC----------CBCSBC---------CEEBSSBCCSSSCCCSSHHHH
T ss_pred cEEEEEEeCCccCccccCCCcceEeEecceEEEEEECCCcEEEEEEeCCeEEEecCCeEEEEecccCccccCCHHHHHHH
Confidence 699999999999999999999999999999999985 6778899999999999874 776 89999999999
Q ss_pred HHHHHHHh
Q 041201 71 LEKAEAQI 78 (94)
Q Consensus 71 ~~rAe~~l 78 (94)
+++||++|
T Consensus 134 ~~~Ae~~l 141 (168)
T 2w6j_H 134 LEKAQSEL 141 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999998
No 9
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=38.22 E-value=28 Score=17.17 Aligned_cols=28 Identities=18% Similarity=0.087 Sum_probs=14.6
Q ss_pred chhHHHHHHHHhhhhHHHHHHHhhccCC
Q 041201 67 PSTNLEKAEAQIGVDVHVALNSALTGKC 94 (94)
Q Consensus 67 A~~~~~rAe~~l~~~~~~a~~~a~~~~~ 94 (94)
|+-+++-|++.-..-..+--.+.|++.|
T Consensus 4 aqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 5556666665554444444444555544
No 10
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=35.62 E-value=52 Score=19.32 Aligned_cols=17 Identities=6% Similarity=-0.103 Sum_probs=8.7
Q ss_pred EEEEEe-CCeEEEEEeCc
Q 041201 32 VLSVHE-GNEVIKYFISS 48 (94)
Q Consensus 32 ~l~i~~-~~~~~~~~v~g 48 (94)
..++.. +|..+++.+.|
T Consensus 85 e~r~~~~~G~~~w~~~~~ 102 (142)
T 3mr0_A 85 EYRVRTRSGDFRWIQSRG 102 (142)
T ss_dssp EEEEECTTSCEEEEEEEE
T ss_pred EEEEECCCCCEEEEEEEE
Confidence 344544 56666555443
No 11
>2f5g_A Transposase, putative; dimer, stem-loop binding, gene regulation; 1.70A {Sulfolobus solfataricus} SCOP: d.58.57.1 PDB: 2f4f_A 2ec2_A
Probab=34.57 E-value=14 Score=22.88 Aligned_cols=18 Identities=17% Similarity=0.366 Sum_probs=15.9
Q ss_pred eeeeccCCcceeeeecce
Q 041201 14 LMSVLPGHASIIAVLKSG 31 (94)
Q Consensus 14 ~~gILp~H~p~it~L~~G 31 (94)
.+.+||||.-++..+.|.
T Consensus 53 a~~impdHvHllv~~~~~ 70 (133)
T 2f5g_A 53 ALEVMPDHIHLFVNCPPR 70 (133)
T ss_dssp EEEEETTEEEEEEECCTT
T ss_pred eeeecCCcEEEEEEecCC
Confidence 578999999999998875
No 12
>3h9m_A P-aminobenzoate synthetase, component I; para-aminobenzoate synthetase, cytophaga hutchinsonii,YP_678417.1, CHU_1808; HET: PGE; 1.57A {Cytophaga hutchinsonii atcc 33406}
Probab=32.21 E-value=1e+02 Score=23.78 Aligned_cols=71 Identities=8% Similarity=-0.099 Sum_probs=42.9
Q ss_pred CCcceeeeecceEEEEEeCCeEEEEEeCccEEEEeCCeEe------Eeccc----ccchhHHHHHHHHhhhhHHHHHHHh
Q 041201 20 GHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYA------EIIAV----EAPSTNLEKAEAQIGVDVHVALNSA 89 (94)
Q Consensus 20 ~H~p~it~L~~G~l~i~~~~~~~~~~v~gGf~~v~~~~v~------~~Id~----e~A~~~~~rAe~~l~~~~~~a~~~a 89 (94)
|.+|++..+..|...+...+-+..+.+.||-++..+=.-| .+-|. +-..+.|++||-.|-++..|--+.-
T Consensus 209 nPspy~~~~~~~~~~~vgaSPE~lv~~~~~~v~t~PiAGT~~Rg~~~~eD~~l~~~Ll~d~Ke~aEh~mvVDl~RndL~r 288 (436)
T 3h9m_A 209 TPMPFSVYYKFNTEYILSASPERFIKKTGDTIISQPIKGTSKRGKSKAEDEMLKQQLGTSEKEQSENTMIVDLVRNDLSR 288 (436)
T ss_dssp SCCTTEEEEEETTEEEEECCCCEEEEEETTEEEECCBCCCC-------------------HHHHHHHHHHHHHHHHHHHT
T ss_pred CCCceEEEEECCCCEEEEEchHHheEEECCEEEEEecCCCCCCCcCHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhh
Confidence 6678888777665555544445666778888777663333 11222 2246899999999988887765554
Q ss_pred h
Q 041201 90 L 90 (94)
Q Consensus 90 ~ 90 (94)
+
T Consensus 289 v 289 (436)
T 3h9m_A 289 T 289 (436)
T ss_dssp T
T ss_pred h
Confidence 3
No 13
>2fyx_A Transposase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Deinococcus radiodurans} SCOP: d.58.57.1 PDB: 2xqc_A 2xm3_A 2xma_A 2xo6_A
Probab=30.29 E-value=20 Score=22.76 Aligned_cols=18 Identities=11% Similarity=0.239 Sum_probs=16.0
Q ss_pred eeeeccCCcceeeeecce
Q 041201 14 LMSVLPGHASIIAVLKSG 31 (94)
Q Consensus 14 ~~gILp~H~p~it~L~~G 31 (94)
++.+||+|.-++..+.|.
T Consensus 63 a~~vmpDHvHlLv~~~p~ 80 (143)
T 2fyx_A 63 ALEVMPDYVHLLLGATPQ 80 (143)
T ss_dssp EEEECSSEEEEEEEECTT
T ss_pred EEEecCCeEEEEEecCCC
Confidence 578999999999999886
No 14
>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0
Probab=27.10 E-value=1.2e+02 Score=19.15 Aligned_cols=57 Identities=18% Similarity=0.086 Sum_probs=42.1
Q ss_pred CceEEEEEecCce---eeee-ccCC--------cceeeeecceEEEEEeCC--eEEEEEeCccEEEEeCCeE
Q 041201 1 MEIDKIIIPSTTG---LMSV-LPGH--------ASIIAVLKSGVLSVHEGN--EVIKYFISSGFALIHTNSY 58 (94)
Q Consensus 1 g~v~~V~~~t~~G---~~gI-Lp~H--------~p~it~L~~G~l~i~~~~--~~~~~~v~gGf~~v~~~~v 58 (94)
|+|.+..+-..|| .+|| ||+- .|-+..+..|.++++-.+ +|+.| -.|-..+|-.|.-
T Consensus 24 GkV~S~~~~~~dG~~kTlGVm~PGe~~YtF~T~~~E~MevvsG~l~V~Lpg~~eW~~~-~aGesF~Vpanss 94 (111)
T 3hqx_A 24 GLCISHTVQFEDGTKKTLGVILPTEQPLTFETHVPERMEIISGECRVKIADSTESELF-RAGQSFYVPGNSL 94 (111)
T ss_dssp TTEEEEEEECTTSCEEEEEEECCCSSCEEEECSSCEEEEEEESEEEEEETTCSSCEEE-ETTCEEEECTTCE
T ss_pred CeEEEEEEEeCCCCEEEEEEEeccccceEEcCCCcEEEEEEEeEEEEEcCCcccCEEe-CCCCEEEECCCCc
Confidence 6789999998888 4676 4665 677888999999999643 45544 4777777776653
No 15
>1qdl_A Protein (anthranilate synthase (TRPE-subunit)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: d.161.1.1
Probab=25.45 E-value=68 Score=24.52 Aligned_cols=71 Identities=10% Similarity=-0.004 Sum_probs=43.8
Q ss_pred CCcceeeeecceEEEEEeCCeEEEEEeCccEEEEeCCeEe------Eeccccc----chhHHHHHHHHhhhhHHHHHHHh
Q 041201 20 GHASIIAVLKSGVLSVHEGNEVIKYFISSGFALIHTNSYA------EIIAVEA----PSTNLEKAEAQIGVDVHVALNSA 89 (94)
Q Consensus 20 ~H~p~it~L~~G~l~i~~~~~~~~~~v~gGf~~v~~~~v~------~~Id~e~----A~~~~~rAe~~l~~~~~~a~~~a 89 (94)
|..|+...+..|-..+...+-+..+.+.||.++..+=.-| .+-|... ..+.|++||-.|-++..|--+.-
T Consensus 205 np~py~~~~~~~~~~~~gaSPE~l~~~~~~~v~t~PiaGT~~Rg~~~~eD~~~~~~Ll~s~Ke~aEh~miVDl~rndL~~ 284 (422)
T 1qdl_A 205 NPSPYMFYLKFDEKYLIGSSPELLFRVQDNIVETYPIAGTRPRGADQEEDLKLELELMNSEKDKAEHLMLVDLARNDLGK 284 (422)
T ss_dssp SCCSEEEEEEETTEEEEEEESCEEEEEETTEEEECCEEEEEECCSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred CccCEEEEEECCCCEEEEeCchheEEEECCEEEEEecCCCCCCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 5577777777655455433334556677787777765444 1112211 35889999999988877765544
Q ss_pred h
Q 041201 90 L 90 (94)
Q Consensus 90 ~ 90 (94)
+
T Consensus 285 v 285 (422)
T 1qdl_A 285 V 285 (422)
T ss_dssp T
T ss_pred h
Confidence 3
No 16
>2vjv_A Transposase ORFA; DNA-binding protein, protein-DNA complex, HUH motif, DNA stem loop, transposition; 1.90A {Helicobacter pylori} SCOP: d.58.57.1 PDB: 2vhg_A 2vic_A 2vju_A 2vih_A 2a6m_A 2a6o_A
Probab=23.83 E-value=30 Score=22.34 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=15.7
Q ss_pred eeeeccCCcceeeeecce
Q 041201 14 LMSVLPGHASIIAVLKSG 31 (94)
Q Consensus 14 ~~gILp~H~p~it~L~~G 31 (94)
++.+||+|.-++..+.|.
T Consensus 61 a~~vmpDHVHlLv~~~p~ 78 (159)
T 2vjv_A 61 EMQTDKDHIHILADIDPS 78 (159)
T ss_dssp EEEEETTEEEEEEECCTT
T ss_pred EEeecCCcEEEEEecCCC
Confidence 578999999999998875
No 17
>4er8_A Tnparep for protein; protein-DNA complex, guide sequence, catalytic tyrosine, RNA recognition motif, transposase, HUH motif, DNA binding PROT complex; HET: DNA; 2.60A {Escherichia coli}
Probab=21.37 E-value=32 Score=22.58 Aligned_cols=18 Identities=39% Similarity=0.475 Sum_probs=14.6
Q ss_pred eeeeccCCcceeeeecce
Q 041201 14 LMSVLPGHASIIAVLKSG 31 (94)
Q Consensus 14 ~~gILp~H~p~it~L~~G 31 (94)
.+.|||||.-+|..+.++
T Consensus 52 A~vlMpNH~Hll~~~p~~ 69 (165)
T 4er8_A 52 AWVVLPEHMHCIWTLPEG 69 (165)
T ss_dssp EEEECSSEEEEEEECCTT
T ss_pred EEEEcCCceEEEEEeCCc
Confidence 478999999998877654
No 18
>1y60_A Formaldehyde-activating enzyme FAE; pentamer, beta-alpha-beta LEFT handed crossover, tetrahydromethanopterin-binding, lyase; HET: H4M; 1.90A {Methylobacterium extorquens} SCOP: d.14.1.12 PDB: 1y5y_A*
Probab=21.34 E-value=37 Score=23.21 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=12.7
Q ss_pred cCCcceeeeecceEE
Q 041201 19 PGHASIIAVLKSGVL 33 (94)
Q Consensus 19 p~H~p~it~L~~G~l 33 (94)
.||.|+++.|.|..+
T Consensus 46 ~Ght~llAv~~pNl~ 60 (169)
T 1y60_A 46 HGFTSLLAVIAPNLP 60 (169)
T ss_dssp TTBCCEECEEETTEE
T ss_pred CCCCceEEEecCCCC
Confidence 689999999988754
Done!