Query 041202
Match_columns 166
No_of_seqs 119 out of 196
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 04:48:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041202.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041202hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01277 Oleosin: Oleosin; In 100.0 6.5E-52 1.4E-56 320.3 14.6 118 35-152 1-118 (118)
2 PF01277 Oleosin: Oleosin; In 96.8 0.063 1.4E-06 42.2 12.6 102 51-161 10-116 (118)
3 PF08006 DUF1700: Protein of u 93.4 2 4.3E-05 34.2 11.1 24 58-82 101-124 (181)
4 PF04156 IncA: IncA protein; 92.2 2.8 6.2E-05 33.2 10.5 15 73-87 33-47 (191)
5 PF11990 DUF3487: Protein of u 91.5 0.76 1.6E-05 35.9 6.4 49 60-119 31-80 (121)
6 PF02987 LEA_4: Late embryogen 88.8 0.47 1E-05 30.5 2.6 34 128-161 2-35 (44)
7 PF07332 DUF1469: Protein of u 87.8 9.1 0.0002 28.3 10.5 29 103-131 84-112 (121)
8 PRK09459 pspG phage shock prot 86.5 4.4 9.6E-05 29.9 6.9 26 51-76 12-37 (76)
9 PF05957 DUF883: Bacterial pro 85.6 1 2.2E-05 32.6 3.2 38 124-161 26-63 (94)
10 TIGR02797 exbB tonB-system ene 83.8 10 0.00023 31.4 8.9 69 60-141 134-205 (211)
11 PRK10801 colicin uptake protei 83.7 13 0.00028 31.5 9.5 54 60-119 139-195 (227)
12 PRK10414 biopolymer transport 83.2 16 0.00035 31.4 10.0 66 60-131 145-213 (244)
13 COG0811 TolQ Biopolymer transp 82.1 16 0.00035 30.4 9.4 55 60-119 134-190 (216)
14 PF07178 TraL: TraL protein; 81.2 5.5 0.00012 29.2 5.6 35 89-123 28-63 (95)
15 PF01618 MotA_ExbB: MotA/TolQ/ 80.8 13 0.00028 28.4 7.8 54 60-119 70-126 (139)
16 PF05957 DUF883: Bacterial pro 80.1 3.7 8E-05 29.6 4.3 35 124-158 37-71 (94)
17 PF02987 LEA_4: Late embryogen 79.8 4 8.6E-05 26.2 4.0 32 127-158 12-43 (44)
18 TIGR02796 tolQ TolQ protein. T 78.8 24 0.00052 29.4 9.3 70 39-119 121-194 (215)
19 TIGR03750 conj_TIGR03750 conju 78.7 6.4 0.00014 30.6 5.5 33 61-93 29-62 (111)
20 PF12537 DUF3735: Protein of u 78.3 10 0.00022 26.7 6.0 56 86-147 14-70 (72)
21 PF08006 DUF1700: Protein of u 77.6 34 0.00073 27.2 10.5 15 69-83 118-132 (181)
22 PRK15083 PTS system mannitol-s 76.7 8.4 0.00018 37.0 6.8 37 106-148 327-363 (639)
23 PF09583 Phageshock_PspG: Phag 76.1 17 0.00037 26.2 6.6 26 51-76 12-37 (65)
24 PF12732 YtxH: YtxH-like prote 76.0 23 0.0005 24.5 7.8 13 93-105 3-15 (74)
25 COG4709 Predicted membrane pro 73.8 57 0.0012 27.9 11.1 27 92-118 150-176 (195)
26 TIGR02975 phageshock_pspG phag 71.5 25 0.00055 25.2 6.5 26 51-76 11-36 (64)
27 TIGR01666 YCCS hypothetical me 71.1 35 0.00076 33.6 9.6 22 60-81 432-453 (704)
28 TIGR01667 YCCS_YHJK integral m 68.9 37 0.00081 33.3 9.3 19 60-78 434-452 (701)
29 PF12597 DUF3767: Protein of u 68.5 21 0.00045 27.7 6.1 45 62-118 47-92 (118)
30 PF12270 Cyt_c_ox_IV: Cytochro 68.4 10 0.00023 30.5 4.6 48 73-120 80-135 (137)
31 PRK00523 hypothetical protein; 67.9 29 0.00062 25.4 6.3 34 107-147 25-58 (72)
32 PF07787 DUF1625: Protein of u 65.7 20 0.00044 30.1 6.0 59 47-113 187-245 (248)
33 PF12732 YtxH: YtxH-like prote 64.9 32 0.0007 23.8 6.0 17 96-112 2-18 (74)
34 PRK10404 hypothetical protein; 64.2 13 0.00029 28.0 4.2 25 126-150 46-70 (101)
35 PRK11365 ssuC alkanesulfonate 63.9 71 0.0015 26.8 9.0 11 122-132 150-160 (263)
36 PRK01844 hypothetical protein; 63.4 40 0.00087 24.6 6.4 34 107-147 24-57 (72)
37 COG4709 Predicted membrane pro 62.9 98 0.0021 26.5 10.1 6 33-38 75-80 (195)
38 PF10112 Halogen_Hydrol: 5-bro 62.3 67 0.0014 25.9 8.2 10 127-136 70-79 (199)
39 PF13829 DUF4191: Domain of un 62.2 21 0.00046 30.9 5.6 42 55-98 35-76 (224)
40 PF04632 FUSC: Fusaric acid re 62.0 1.3E+02 0.0029 27.8 11.5 85 48-136 41-134 (650)
41 PRK04897 heat shock protein Ht 61.2 67 0.0015 27.9 8.5 39 106-144 58-96 (298)
42 COG0600 TauC ABC-type nitrate/ 60.4 1E+02 0.0022 26.8 9.4 64 69-132 97-161 (258)
43 PF03672 UPF0154: Uncharacteri 59.5 35 0.00075 24.4 5.4 33 108-147 18-50 (64)
44 PRK13707 conjugal transfer pil 58.9 30 0.00065 26.2 5.3 31 92-122 37-68 (101)
45 PRK01345 heat shock protein Ht 57.0 76 0.0017 28.0 8.3 36 110-145 49-84 (317)
46 PF06103 DUF948: Bacterial pro 54.7 51 0.0011 23.4 5.7 15 143-157 54-68 (90)
47 PRK15100 amino acid ABC transp 53.1 1.2E+02 0.0027 24.6 10.3 10 123-132 115-124 (220)
48 PRK00247 putative inner membra 52.0 2.1E+02 0.0046 27.0 11.8 54 64-126 227-283 (429)
49 PRK10404 hypothetical protein; 51.8 23 0.0005 26.8 3.7 41 122-162 31-71 (101)
50 PF13886 DUF4203: Domain of un 51.4 1.2E+02 0.0027 24.5 8.1 83 37-119 53-159 (210)
51 PRK01315 putative inner membra 51.1 47 0.001 30.0 6.1 31 67-97 217-247 (329)
52 PRK03072 heat shock protein Ht 50.8 1.6E+02 0.0035 25.5 9.2 39 108-146 50-88 (288)
53 PF01970 TctA: Tripartite tric 49.6 39 0.00085 31.1 5.5 31 57-87 93-123 (419)
54 cd03513 CrtW_beta-carotene-ket 49.0 42 0.00091 28.4 5.2 21 57-77 1-21 (225)
55 PF14333 DUF4389: Domain of un 48.9 97 0.0021 22.2 7.5 21 102-122 25-45 (80)
56 PF05915 DUF872: Eukaryotic pr 47.9 56 0.0012 25.3 5.3 12 109-120 94-105 (115)
57 PF03773 DUF318: Predicted per 47.6 1.1E+02 0.0023 26.5 7.6 47 74-120 89-138 (307)
58 TIGR00439 ftsX putative protei 46.8 94 0.002 27.3 7.2 28 94-121 281-308 (309)
59 COG4575 ElaB Uncharacterized c 46.4 28 0.00061 27.1 3.4 39 124-162 36-74 (104)
60 PF12811 BaxI_1: Bax inhibitor 46.1 2E+02 0.0043 25.6 9.1 29 58-88 90-119 (274)
61 COG4818 Predicted membrane pro 45.9 63 0.0014 25.2 5.3 48 72-119 37-85 (105)
62 PF04156 IncA: IncA protein; 45.5 1.5E+02 0.0032 23.4 11.6 21 77-97 33-53 (191)
63 PRK11026 ftsX cell division AB 45.0 1.2E+02 0.0026 26.6 7.6 25 97-121 284-308 (309)
64 PRK03982 heat shock protein Ht 44.3 1.8E+02 0.0039 24.9 8.4 36 109-144 49-84 (288)
65 TIGR02805 exbB2 tonB-system en 43.9 54 0.0012 26.5 4.8 57 60-119 70-126 (138)
66 PRK06231 F0F1 ATP synthase sub 43.0 1.4E+02 0.0031 24.7 7.4 18 119-136 80-97 (205)
67 TIGR01597 PYST-B Plasmodium yo 42.9 55 0.0012 29.0 5.1 12 107-118 234-245 (255)
68 PRK10631 p-hydroxybenzoic acid 42.9 3.4E+02 0.0075 26.8 11.5 86 48-137 57-151 (652)
69 PRK09776 putative diguanylate 42.0 2.2E+02 0.0048 27.7 9.5 18 60-77 141-158 (1092)
70 PF12805 FUSC-like: FUSC-like 42.0 2.2E+02 0.0047 24.2 10.4 24 91-114 73-96 (284)
71 TIGR01478 STEVOR variant surfa 41.9 1.6E+02 0.0034 26.8 7.9 20 46-65 179-198 (295)
72 PF11286 DUF3087: Protein of u 41.7 1.9E+02 0.004 24.1 7.8 41 106-147 60-105 (165)
73 PF03379 CcmB: CcmB protein; 41.6 1.5E+02 0.0033 24.5 7.3 47 52-98 132-184 (215)
74 COG4425 Predicted membrane pro 39.5 75 0.0016 31.0 5.8 61 56-121 47-107 (588)
75 PF12420 DUF3671: Protein of u 38.1 1E+02 0.0022 23.3 5.4 20 98-117 80-99 (104)
76 PRK10263 DNA translocase FtsK; 37.4 2.1E+02 0.0045 31.0 9.0 21 61-81 142-162 (1355)
77 PF06695 Sm_multidrug_ex: Puta 37.2 1.9E+02 0.0041 22.1 8.2 15 104-118 33-47 (121)
78 PF01618 MotA_ExbB: MotA/TolQ/ 36.7 31 0.00066 26.4 2.4 18 59-76 102-119 (139)
79 COG1289 Predicted membrane pro 36.3 3.1E+02 0.0068 26.3 9.5 25 38-62 406-430 (674)
80 PRK13022 secF preprotein trans 36.2 1.6E+02 0.0036 25.6 7.0 29 62-90 234-262 (289)
81 PF14017 DUF4233: Protein of u 35.8 92 0.002 23.8 4.8 44 77-120 54-99 (107)
82 COG2148 WcaJ Sugar transferase 35.5 28 0.0006 30.1 2.1 17 74-90 53-69 (226)
83 PF12729 4HB_MCP_1: Four helix 35.5 1.7E+02 0.0036 21.1 6.8 26 91-116 15-40 (181)
84 PRK15049 L-asparagine permease 35.4 1.3E+02 0.0029 27.5 6.7 32 30-61 26-57 (499)
85 PF06120 Phage_HK97_TLTM: Tail 35.4 1E+02 0.0022 27.7 5.7 44 96-148 21-67 (301)
86 PRK05812 secD preprotein trans 35.3 1.4E+02 0.003 28.4 6.9 34 60-93 435-468 (498)
87 TIGR01998 PTS-II-BC-nag PTS sy 34.0 1.2E+02 0.0025 28.6 6.1 45 63-107 151-195 (476)
88 COG0811 TolQ Biopolymer transp 34.0 36 0.00077 28.4 2.5 17 59-75 166-182 (216)
89 PF05745 CRPA: Chlamydia 15 kD 33.9 1E+02 0.0023 25.3 5.0 39 46-89 68-106 (150)
90 TIGR01097 PhnE phosphonate ABC 33.4 2.7E+02 0.0058 22.8 7.6 27 106-132 135-162 (250)
91 TIGR02790 nickel_nikC nickel A 33.1 2.9E+02 0.0063 23.1 9.3 85 46-131 63-160 (258)
92 TIGR01190 ccmB heme exporter p 33.0 3E+02 0.0065 23.2 9.0 24 75-98 158-181 (211)
93 PF15420 Abhydrolase_9_N: Alph 32.9 66 0.0014 27.1 3.9 44 77-122 1-44 (208)
94 PF01484 Col_cuticle_N: Nemato 31.6 79 0.0017 19.9 3.3 19 102-120 14-32 (53)
95 PF12666 PrgI: PrgI family pro 31.4 1.9E+02 0.0041 20.4 5.6 19 33-51 16-34 (93)
96 PF06081 DUF939: Bacterial pro 30.7 2.5E+02 0.0055 21.7 7.6 15 124-138 114-128 (141)
97 PRK15135 histidine/lysine/argi 30.4 2.9E+02 0.0063 22.2 9.1 31 102-132 96-129 (228)
98 PF02397 Bac_transf: Bacterial 30.4 51 0.0011 27.3 2.8 24 67-90 6-29 (187)
99 PRK10535 macrolide transporter 30.0 51 0.0011 31.5 3.1 14 58-71 579-592 (648)
100 PLN03211 ABC transporter G-25; 30.0 2.3E+02 0.0051 27.4 7.6 56 53-113 523-579 (659)
101 COG4537 ComGC Competence prote 29.7 34 0.00074 26.8 1.6 28 56-83 12-39 (107)
102 PRK12933 secD preprotein trans 29.6 1.8E+02 0.0038 28.7 6.6 45 57-101 540-584 (604)
103 PRK13023 bifunctional preprote 29.1 2.4E+02 0.0053 28.4 7.7 34 60-93 380-413 (758)
104 PTZ00370 STEVOR; Provisional 28.5 1.8E+02 0.004 26.4 6.1 19 46-64 179-197 (296)
105 TIGR03003 ectoine_ehuD ectoine 28.3 3E+02 0.0066 21.8 9.5 31 102-132 89-122 (212)
106 cd03395 PAP2_like_4 PAP2_like_ 28.0 2.9E+02 0.0064 21.5 6.7 20 96-115 157-176 (177)
107 PRK10132 hypothetical protein; 28.0 74 0.0016 24.4 3.1 27 124-150 40-66 (108)
108 PF08372 PRT_C: Plant phosphor 27.6 51 0.0011 26.9 2.3 56 106-162 9-81 (156)
109 TIGR02762 TraL_TIGR type IV co 27.5 2E+02 0.0044 21.1 5.4 14 109-122 52-65 (95)
110 PF09972 DUF2207: Predicted me 27.3 4.2E+02 0.0091 23.2 8.1 20 110-129 446-465 (511)
111 COG1289 Predicted membrane pro 27.0 2.9E+02 0.0062 26.6 7.5 23 60-82 407-429 (674)
112 PF12277 DUF3618: Protein of u 26.9 1.1E+02 0.0024 20.0 3.4 21 126-146 11-31 (49)
113 PRK12585 putative monovalent c 26.4 4.2E+02 0.0091 22.8 10.2 11 121-131 101-111 (197)
114 PRK08124 flagellar motor prote 26.3 2.2E+02 0.0047 24.6 6.1 49 60-119 159-207 (263)
115 PRK15127 multidrug efflux syst 26.3 95 0.0021 31.7 4.4 48 63-113 979-1029(1049)
116 PF12153 CAP18_C: LPS binding 26.3 1.2E+02 0.0026 18.6 3.2 22 127-148 4-25 (28)
117 TIGR03750 conj_TIGR03750 conju 26.3 3.1E+02 0.0068 21.3 8.0 10 110-119 68-77 (111)
118 PRK12585 putative monovalent c 26.2 4.2E+02 0.0091 22.8 7.6 13 124-136 125-137 (197)
119 PRK14402 membrane protein; Pro 25.7 2.4E+02 0.0052 23.7 6.1 35 67-101 107-144 (198)
120 COG3296 Uncharacterized protei 25.7 3.1E+02 0.0068 22.5 6.4 30 46-75 72-101 (143)
121 PF06549 DUF1118: Protein of u 25.7 1.9E+02 0.0042 22.9 5.1 41 60-100 59-99 (116)
122 TIGR01183 ntrB nitrate ABC tra 25.5 3.7E+02 0.0081 21.9 10.1 63 69-131 53-116 (202)
123 PF10332 DUF2418: Protein of u 25.4 3E+02 0.0065 20.7 7.1 14 70-83 16-29 (99)
124 PF06796 NapE: Periplasmic nit 25.3 1.7E+02 0.0037 20.4 4.3 13 106-118 40-52 (56)
125 PRK10747 putative protoheme IX 25.2 4.8E+02 0.01 23.0 9.2 15 55-69 7-21 (398)
126 PF11833 DUF3353: Protein of u 24.9 2.4E+02 0.0053 23.5 5.9 17 57-73 144-160 (194)
127 PRK12652 putative monovalent c 24.9 74 0.0016 28.8 3.1 37 44-80 172-209 (357)
128 PRK14397 membrane protein; Pro 24.8 2.3E+02 0.0051 24.4 5.9 20 73-92 112-131 (222)
129 KOG0723 Molecular chaperone (D 24.4 1.9E+02 0.004 22.9 4.8 11 151-161 93-103 (112)
130 PRK11123 arginine transporter 24.4 4.1E+02 0.009 22.0 10.2 31 102-132 107-140 (238)
131 PRK02463 OxaA-like protein pre 24.3 1.5E+02 0.0032 26.5 4.8 42 67-117 210-251 (307)
132 PF05283 MGC-24: Multi-glycosy 24.3 79 0.0017 26.6 2.9 27 91-117 159-185 (186)
133 PF14276 DUF4363: Domain of un 24.2 87 0.0019 23.2 2.9 31 105-135 10-40 (121)
134 PF13779 DUF4175: Domain of un 24.2 1.9E+02 0.0041 29.4 6.0 24 50-73 8-31 (820)
135 TIGR02976 phageshock_pspB phag 24.1 2.8E+02 0.0062 20.0 6.4 12 109-120 19-30 (75)
136 TIGR02123 TRAP_fused TRAP tran 24.0 1.1E+02 0.0025 29.7 4.3 36 53-88 430-466 (613)
137 PF06724 DUF1206: Domain of Un 23.8 2.1E+02 0.0045 19.6 4.5 38 30-67 27-64 (73)
138 PF07889 DUF1664: Protein of u 23.7 2E+02 0.0043 22.7 4.9 12 77-88 5-16 (126)
139 TIGR02973 nitrate_rd_NapE peri 23.5 2.1E+02 0.0045 18.9 4.2 14 105-118 26-39 (42)
140 PRK02391 heat shock protein Ht 23.4 4.7E+02 0.01 22.9 7.7 40 106-145 54-93 (296)
141 PRK14726 bifunctional preprote 23.3 2.9E+02 0.0062 28.3 7.0 37 57-93 471-507 (855)
142 PF02687 FtsX: FtsX-like perme 22.2 2.6E+02 0.0056 19.1 4.8 7 35-41 39-45 (121)
143 PF11990 DUF3487: Protein of u 22.1 3.7E+02 0.0081 20.9 6.1 7 110-116 83-89 (121)
144 COG4575 ElaB Uncharacterized c 22.1 1.5E+02 0.0033 23.1 3.8 32 126-157 49-80 (104)
145 PRK14472 F0F1 ATP synthase sub 22.0 3E+02 0.0065 21.8 5.7 20 117-136 48-67 (175)
146 PF01858 RB_A: Retinoblastoma- 22.0 2.6E+02 0.0057 23.0 5.6 50 104-153 5-55 (194)
147 TIGR02797 exbB tonB-system ene 21.9 62 0.0014 26.8 1.9 19 59-77 166-184 (211)
148 PF14219 DUF4328: Domain of un 21.9 1.7E+02 0.0036 23.0 4.2 29 90-118 23-51 (171)
149 CHL00118 atpG ATP synthase CF0 21.9 3.2E+02 0.0069 21.3 5.8 12 123-134 58-69 (156)
150 COG3447 Predicted integral mem 21.9 4.7E+02 0.01 23.8 7.5 37 44-80 138-185 (308)
151 PF13515 FUSC_2: Fusaric acid 21.8 3E+02 0.0066 19.5 9.7 16 123-138 104-119 (128)
152 PF06295 DUF1043: Protein of u 21.7 1.7E+02 0.0038 22.5 4.2 11 124-134 31-41 (128)
153 PRK12871 ubiA prenyltransferas 21.7 5.5E+02 0.012 22.4 9.8 21 30-50 90-110 (297)
154 PF05461 ApoL: Apolipoprotein 21.6 5.9E+02 0.013 22.8 10.8 13 34-46 95-107 (313)
155 PF00873 ACR_tran: AcrB/AcrD/A 21.4 6.9E+02 0.015 25.2 9.2 36 56-91 432-470 (1021)
156 KOG3088 Secretory carrier memb 21.4 4.7E+02 0.01 24.0 7.4 20 102-121 256-275 (313)
157 COG0628 yhhT Predicted permeas 21.3 3.7E+02 0.0081 23.3 6.6 13 109-121 90-102 (355)
158 PF03597 CcoS: Cytochrome oxid 21.2 1.6E+02 0.0035 19.4 3.4 27 102-134 14-40 (45)
159 TIGR01427 PTS_IIC_fructo PTS s 21.2 6.2E+02 0.013 22.9 8.7 41 79-120 90-134 (346)
160 TIGR01185 devC DevC protein. T 21.2 3.1E+02 0.0068 24.4 6.3 12 59-70 316-327 (380)
161 PF04211 MtrC: Tetrahydrometha 21.1 4.7E+02 0.01 23.4 7.2 24 33-56 194-217 (262)
162 PRK08456 flagellar motor prote 21.1 3.3E+02 0.0071 23.4 6.2 32 60-93 158-189 (257)
163 TIGR02302 aProt_lowcomp conser 21.1 3.8E+02 0.0082 27.6 7.4 57 77-137 17-84 (851)
164 PRK12911 bifunctional preprote 21.1 3.2E+02 0.0069 29.8 7.0 34 59-92 1010-1043(1403)
165 PF10112 Halogen_Hydrol: 5-bro 21.0 4.4E+02 0.0096 21.1 9.4 10 125-134 75-84 (199)
166 PF12805 FUSC-like: FUSC-like 20.8 5.2E+02 0.011 21.9 7.6 38 107-148 86-123 (284)
167 TIGR02805 exbB2 tonB-system en 20.7 86 0.0019 25.3 2.4 21 58-78 101-121 (138)
168 PRK10132 hypothetical protein; 20.6 1.8E+02 0.0039 22.3 4.0 33 124-157 51-83 (108)
169 cd01324 cbb3_Oxidase_CcoQ Cyto 20.5 2.7E+02 0.0058 18.4 4.3 13 102-114 20-32 (48)
170 PF04982 HPP: HPP family; Int 20.5 3.9E+02 0.0085 20.3 8.1 81 39-119 28-116 (120)
171 PF01034 Syndecan: Syndecan do 20.5 18 0.00039 25.9 -1.4 25 106-132 27-51 (64)
No 1
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=100.00 E-value=6.5e-52 Score=320.25 Aligned_cols=118 Identities=64% Similarity=1.020 Sum_probs=116.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041202 35 SASKVLAVLAMLPLGGTFLALAGVALTGTIIGLCVTTPLFIIFSPVIVPAAIVLALAVTGFLTSGAFGLTALSSLSWVLS 114 (166)
Q Consensus 35 sssqvl~~~tll~~gg~LL~LaGlTL~gtvigL~vatPL~iifSPVLVPaai~~~l~~~gfl~sg~~g~~~ls~lsW~~~ 114 (166)
|++|++++++++++|++||+|+|+||+||++||+++|||||||||||||++|+++|+++||++||+||+++++++||+||
T Consensus 1 s~~qvl~~~~~~~~gg~LL~LaGlTL~gtvigL~vatPLfvifSPVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~ 80 (118)
T PF01277_consen 1 STSQVLAVVTLLPAGGTLLVLAGLTLAGTVIGLAVATPLFVIFSPVLVPAAIAIGLAVAGFLTSGAFGLTALSSLSWMYN 80 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCchhHHHHHHHHhhhhHHHhhhhhHhhHHH
Q 041202 115 ILRQKTGSVPEMADQAKKRVAGMADYVGQKTKEVGQDI 152 (166)
Q Consensus 115 y~rg~~p~g~dqld~Ak~Ri~d~A~~vg~kake~Gq~i 152 (166)
|+||+||+++||+|+||+|++|+|+||+||+||+||+|
T Consensus 81 y~rg~~~~~~~q~d~Ak~ri~d~a~~v~~kake~gq~~ 118 (118)
T PF01277_consen 81 YFRGRHPPGPDQLDYAKRRIADTASYVGQKAKEVGQKI 118 (118)
T ss_pred HhccCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCccC
Confidence 99999999999999999999999999999999999975
No 2
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=96.76 E-value=0.063 Score=42.18 Aligned_cols=102 Identities=24% Similarity=0.326 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhhchhhH---HHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHhhCCCCCch
Q 041202 51 TFLALAGVALTGTIIGLCVTTPLFIIFSPVIV---PAAIVLALAVTGFLTSG--AFGLTALSSLSWVLSILRQKTGSVPE 125 (166)
Q Consensus 51 ~LL~LaGlTL~gtvigL~vatPL~iifSPVLV---Paai~~~l~~~gfl~sg--~~g~~~ls~lsW~~~y~rg~~p~g~d 125 (166)
+++..+|..|.=+-+-|+-+.=-+++++|++| |.-+-+++++ +++.+| ..|.-+++.++|+..-++-.....+.
T Consensus 10 ~~~~~gg~LL~LaGlTL~gtvigL~vatPLfvifSPVlVPaai~~-~l~~~Gfl~sg~~g~~~ls~lsW~~~y~rg~~~~ 88 (118)
T PF01277_consen 10 TLLPAGGTLLVLAGLTLAGTVIGLAVATPLFVIFSPVLVPAAIAI-GLAVAGFLTSGAFGLTALSSLSWMYNYFRGRHPP 88 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCC
Confidence 44444455554444444544445889999887 5555444433 344443 34555788899999888776665554
Q ss_pred hHHHHHHHHhhhhHHHhhhhhHhhHHHhhHhhhhcC
Q 041202 126 MADQAKKRVAGMADYVGQKTKEVGQDIQSKVHEAGG 161 (166)
Q Consensus 126 qld~Ak~Ri~d~A~~vg~kake~Gq~iq~ka~da~~ 161 (166)
.. |.-++.++|-.|...++.+|+||.++
T Consensus 89 ~~--------~q~d~Ak~ri~d~a~~v~~kake~gq 116 (118)
T PF01277_consen 89 GP--------DQLDYAKRRIADTASYVGQKAKEVGQ 116 (118)
T ss_pred CC--------ccHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 33 33334445555555555567777654
No 3
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=93.35 E-value=2 Score=34.20 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhhhchhhhchhhH
Q 041202 58 VALTGTIIGLCVTTPLFIIFSPVIV 82 (166)
Q Consensus 58 lTL~gtvigL~vatPL~iifSPVLV 82 (166)
+.+...++++.++...+ +++|++.
T Consensus 101 ~~~~~~~~~~~i~~~~~-i~~~~~l 124 (181)
T PF08006_consen 101 IVLILLVLALIIAVIAF-ILSGIIL 124 (181)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 33444455544444444 4555444
No 4
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.24 E-value=2.8 Score=33.20 Aligned_cols=15 Identities=20% Similarity=0.098 Sum_probs=6.5
Q ss_pred chhhhchhhHHHHHH
Q 041202 73 LFIIFSPVIVPAAIV 87 (166)
Q Consensus 73 L~iifSPVLVPaai~ 87 (166)
+-.++|+++..+.++
T Consensus 33 l~~~~s~~lg~~~lA 47 (191)
T PF04156_consen 33 LGALISFILGIALLA 47 (191)
T ss_pred hHHHHHHHHHHHHHH
Confidence 444444444443333
No 5
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=91.53 E-value=0.76 Score=35.88 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhhchhhhchh-hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhC
Q 041202 60 LTGTIIGLCVTTPLFIIFSPV-IVPAAIVLALAVTGFLTSGAFGLTALSSLSWVLSILRQK 119 (166)
Q Consensus 60 L~gtvigL~vatPL~iifSPV-LVPaai~~~l~~~gfl~sg~~g~~~ls~lsW~~~y~rg~ 119 (166)
.+++++|++++.|+.++++.+ .+|..++++.++.-|+. -.|+-++=||+
T Consensus 31 ~~~~~~g~~~gl~la~~~g~~a~~pt~~ll~~~~~v~~g-----------g~~l~rlKRGK 80 (121)
T PF11990_consen 31 GVGFVAGLVVGLPLALLTGWWAMIPTGALLGPILGVFVG-----------GKLLARLKRGK 80 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------HHHHHHHHcCC
Confidence 346788888999998888888 67877766665554443 35666765665
No 6
>PF02987 LEA_4: Late embryogenesis abundant protein; InterPro: IPR004238 Different types of late embryogenesis abundant (LEA) proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This entry represents a repeat characteristic of some LEA proteins, including LEA3 [, ].
Probab=88.75 E-value=0.47 Score=30.53 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=19.8
Q ss_pred HHHHHHHhhhhHHHhhhhhHhhHHHhhHhhhhcC
Q 041202 128 DQAKKRVAGMADYVGQKTKEVGQDIQSKVHEAGG 161 (166)
Q Consensus 128 d~Ak~Ri~d~A~~vg~kake~Gq~iq~ka~da~~ 161 (166)
|+++.+..++.....+|+.|+.++..+|+.|+.+
T Consensus 2 e~a~~Ka~e~~d~a~~ka~e~kd~a~eKa~eaKd 35 (44)
T PF02987_consen 2 EAAKEKASEAKDAAKEKAGEAKDAAAEKAEEAKD 35 (44)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555666666666666666555544
No 7
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=87.84 E-value=9.1 Score=28.26 Aligned_cols=29 Identities=28% Similarity=0.130 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCCchhHHHHH
Q 041202 103 LTALSSLSWVLSILRQKTGSVPEMADQAK 131 (166)
Q Consensus 103 ~~~ls~lsW~~~y~rg~~p~g~dqld~Ak 131 (166)
+.++-.+.|..|.++++.++-++-.|+.|
T Consensus 84 ~la~i~~~~~~~~l~~~~~~~~~t~~~l~ 112 (121)
T PF07332_consen 84 LLALILLLIGRRRLRRAPPPFEETIAELK 112 (121)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 33445566777877765444344344433
No 8
>PRK09459 pspG phage shock protein G; Reviewed
Probab=86.48 E-value=4.4 Score=29.93 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhh
Q 041202 51 TFLALAGVALTGTIIGLCVTTPLFII 76 (166)
Q Consensus 51 ~LL~LaGlTL~gtvigL~vatPL~ii 76 (166)
+.|+++|+|+.|...++.+++-+..+
T Consensus 12 ~~LlvTGiSllgv~aAl~va~~vM~l 37 (76)
T PRK09459 12 VMLLVTGISLLGIIAALGVATLVMFL 37 (76)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999988887765544
No 9
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=85.63 E-value=1 Score=32.62 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=25.4
Q ss_pred chhHHHHHHHHhhhhHHHhhhhhHhhHHHhhHhhhhcC
Q 041202 124 PEMADQAKKRVAGMADYVGQKTKEVGQDIQSKVHEAGG 161 (166)
Q Consensus 124 ~dqld~Ak~Ri~d~A~~vg~kake~Gq~iq~ka~da~~ 161 (166)
.+..+.+|.|+.+...++.++++|..+.++.+++++..
T Consensus 26 ~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 63 (94)
T PF05957_consen 26 GEKADEARDRAEEALDDARDRAEDAADQAREQAREAAE 63 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777777777666666665443
No 10
>TIGR02797 exbB tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.
Probab=83.84 E-value=10 Score=31.40 Aligned_cols=69 Identities=20% Similarity=0.185 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhhchhhh---chhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHhh
Q 041202 60 LTGTIIGLCVTTPLFIIF---SPVIVPAAIVLALAVTGFLTSGAFGLTALSSLSWVLSILRQKTGSVPEMADQAKKRVAG 136 (166)
Q Consensus 60 L~gtvigL~vatPL~iif---SPVLVPaai~~~l~~~gfl~sg~~g~~~ls~lsW~~~y~rg~~p~g~dqld~Ak~Ri~d 136 (166)
|.|||+|++-+.=-+=.. +|-.|-.+|.-+|.. +. +|+..-=.....|||++.+ +|.-.++|.+
T Consensus 134 LLGTV~Gmi~aF~~ia~~g~~~~~~lA~GI~eALit----TA--~GL~VAIPAli~yn~f~~r-------i~~~~~~le~ 200 (211)
T TIGR02797 134 LFGTVWGIMNSFIGISKSQTTNLAVVAPGIAEALLA----TA--IGLVAAIPAVVIYNVFARS-------IAGYRALLAD 200 (211)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCHHHHhHHHHHHHHH----HH--HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 568888887654322110 333333344444433 33 3444434445789999765 5666666666
Q ss_pred hhHHH
Q 041202 137 MADYV 141 (166)
Q Consensus 137 ~A~~v 141 (166)
.+.++
T Consensus 201 ~~~e~ 205 (211)
T TIGR02797 201 ASAGV 205 (211)
T ss_pred HHHHH
Confidence 55443
No 11
>PRK10801 colicin uptake protein TolQ; Provisional
Probab=83.67 E-value=13 Score=31.48 Aligned_cols=54 Identities=28% Similarity=0.240 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhhchhh---hchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhC
Q 041202 60 LTGTIIGLCVTTPLFII---FSPVIVPAAIVLALAVTGFLTSGAFGLTALSSLSWVLSILRQK 119 (166)
Q Consensus 60 L~gtvigL~vatPL~ii---fSPVLVPaai~~~l~~~gfl~sg~~g~~~ls~lsW~~~y~rg~ 119 (166)
|.|||+|++-+.--+=. -+|-.+-.+|..+|.++ ++|+..--.....|||+..+
T Consensus 139 LlGTV~Gmi~aF~~i~~~g~~~~~~~a~GI~~ALitT------a~GL~vAIPAli~yN~f~~r 195 (227)
T PRK10801 139 LFGTVWGIMHAFIALGAVKQATLQMVAPGIAEALIAT------AIGLFAAIPAVMAYNRLNQR 195 (227)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 56888888765432211 13444444555555444 33444444445789999765
No 12
>PRK10414 biopolymer transport protein ExbB; Provisional
Probab=83.23 E-value=16 Score=31.37 Aligned_cols=66 Identities=23% Similarity=0.267 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhhchh---hhchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhCCCCCchhHHHHH
Q 041202 60 LTGTIIGLCVTTPLFI---IFSPVIVPAAIVLALAVTGFLTSGAFGLTALSSLSWVLSILRQKTGSVPEMADQAK 131 (166)
Q Consensus 60 L~gtvigL~vatPL~i---ifSPVLVPaai~~~l~~~gfl~sg~~g~~~ls~lsW~~~y~rg~~p~g~dqld~Ak 131 (166)
|.|||+|++-+.--+= --+|-.|-.+|.-+|..+ ++|+..--.-...|||++.+--.-.+++|...
T Consensus 145 LlGTV~Gmi~aF~~ia~~g~~~~~~va~GI~eALitT------a~GL~vAIPAliayn~f~~ri~~~~~~me~~a 213 (244)
T PRK10414 145 LFGTVWGIMNSFIGIAQTQTTNLAVVAPGIAEALLAT------AIGLVAAIPAVVIYNVFARQIGGYKAMLGDVA 213 (244)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888876533321 025666666666666554 34555445556899999876433333343333
No 13
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=82.11 E-value=16 Score=30.42 Aligned_cols=55 Identities=24% Similarity=0.259 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhhchhhhc--hhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhC
Q 041202 60 LTGTIIGLCVTTPLFIIFS--PVIVPAAIVLALAVTGFLTSGAFGLTALSSLSWVLSILRQK 119 (166)
Q Consensus 60 L~gtvigL~vatPL~iifS--PVLVPaai~~~l~~~gfl~sg~~g~~~ls~lsW~~~y~rg~ 119 (166)
|.|||+|+.-+ |.-.+ ==-=|++++-++..+=+ +-++|+.+--.-...|||++++
T Consensus 134 L~GTV~GIm~a---F~~i~~~~~~~~a~vA~GIseAL~--aTA~GL~vAIPAvi~yn~l~r~ 190 (216)
T COG0811 134 LLGTVWGIMPA---FIGIGAGGGADLAVVAPGISEALI--ATAIGLFVAIPAVVAYNVLRRK 190 (216)
T ss_pred HHHHHHHHHHH---HHHHhccCCCCHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 46788887654 22222 00123444444433322 2245555556667899999886
No 14
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=81.19 E-value=5.5 Score=29.23 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=23.6
Q ss_pred HHHHHHHHhhh-hHHHHHHHHHHHHHHHHhhCCCCC
Q 041202 89 ALAVTGFLTSG-AFGLTALSSLSWVLSILRQKTGSV 123 (166)
Q Consensus 89 ~l~~~gfl~sg-~~g~~~ls~lsW~~~y~rg~~p~g 123 (166)
.+.+.|++.+. ..|+..-.+++|.||+++...+.+
T Consensus 28 ~~~~~gi~~~~~~~g~i~g~~~~~~~~k~K~~~~~g 63 (95)
T PF07178_consen 28 ILFVIGILSGHFLIGLILGIVLWWGYRKFKKGRGRG 63 (95)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 33444555555 356666667899999999988754
No 15
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=80.84 E-value=13 Score=28.43 Aligned_cols=54 Identities=26% Similarity=0.343 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhhchhh---hchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhC
Q 041202 60 LTGTIIGLCVTTPLFII---FSPVIVPAAIVLALAVTGFLTSGAFGLTALSSLSWVLSILRQK 119 (166)
Q Consensus 60 L~gtvigL~vatPL~ii---fSPVLVPaai~~~l~~~gfl~sg~~g~~~ls~lsW~~~y~rg~ 119 (166)
|.|||+|++.+.--+=. -.|--+=.+|..+|.. + .+|+..--...++|+|++.+
T Consensus 70 LlGTv~Gmi~~f~~l~~~~~~~~~~l~~gi~~Al~t----T--~~GL~vai~~~~~~~~l~~~ 126 (139)
T PF01618_consen 70 LLGTVIGMIEAFQALAETGSGDPSQLAGGISVALIT----T--AYGLVVAIPALPFYNYLKRR 126 (139)
T ss_pred HHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHH----H--HHHHHHHHHHHHHHHHHHHH
Confidence 56888888776544422 1233333333333332 2 23333333334889998764
No 16
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=80.08 E-value=3.7 Score=29.63 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=29.4
Q ss_pred chhHHHHHHHHhhhhHHHhhhhhHhhHHHhhHhhh
Q 041202 124 PEMADQAKKRVAGMADYVGQKTKEVGQDIQSKVHE 158 (166)
Q Consensus 124 ~dqld~Ak~Ri~d~A~~vg~kake~Gq~iq~ka~d 158 (166)
.+.+|.+|.++.|....+.+++++......+.++|
T Consensus 37 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e 71 (94)
T PF05957_consen 37 EEALDDARDRAEDAADQAREQAREAAEQTEDYVRE 71 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999998888877777765
No 17
>PF02987 LEA_4: Late embryogenesis abundant protein; InterPro: IPR004238 Different types of late embryogenesis abundant (LEA) proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This entry represents a repeat characteristic of some LEA proteins, including LEA3 [, ].
Probab=79.82 E-value=4 Score=26.16 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=21.0
Q ss_pred HHHHHHHHhhhhHHHhhhhhHhhHHHhhHhhh
Q 041202 127 ADQAKKRVAGMADYVGQKTKEVGQDIQSKVHE 158 (166)
Q Consensus 127 ld~Ak~Ri~d~A~~vg~kake~Gq~iq~ka~d 158 (166)
-|.++.+..++..++.+|+.|..+.+..++.+
T Consensus 12 ~d~a~~ka~e~kd~a~eKa~eaKd~a~eka~e 43 (44)
T PF02987_consen 12 KDAAKEKAGEAKDAAAEKAEEAKDSAKEKAGE 43 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666666666667777776666666654
No 18
>TIGR02796 tolQ TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species
Probab=78.83 E-value=24 Score=29.40 Aligned_cols=70 Identities=20% Similarity=0.139 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhh----hchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041202 39 VLAVLAMLPLGGTFLALAGVALTGTIIGLCVTTPLFII----FSPVIVPAAIVLALAVTGFLTSGAFGLTALSSLSWVLS 114 (166)
Q Consensus 39 vl~~~tll~~gg~LL~LaGlTL~gtvigL~vatPL~ii----fSPVLVPaai~~~l~~~gfl~sg~~g~~~ls~lsW~~~ 114 (166)
-+.++..+...+-||. |.|||+|++-+.--+=. -+|-.+-.+|..+|..+ ..++.++-- ..=.||
T Consensus 121 ~l~~L~ti~~~aPllG-----LLGTV~Gmi~aF~~i~~~~g~~~~~~la~GI~~ALitT----a~GL~vAIP--ali~yn 189 (215)
T TIGR02796 121 GLPFLATIGSTSPFIG-----LFGTVWGIMHSFQAIGGSKNQATLAVVAPGIAEALIAT----AIGLFAAIP--AVIAYN 189 (215)
T ss_pred hhHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHH----HHHHHHHHH--HHHHHH
Confidence 3444444444444444 45788887765433322 12334444444444443 233333333 335799
Q ss_pred HHhhC
Q 041202 115 ILRQK 119 (166)
Q Consensus 115 y~rg~ 119 (166)
|++.+
T Consensus 190 ~f~~~ 194 (215)
T TIGR02796 190 KLSTQ 194 (215)
T ss_pred HHHHH
Confidence 99775
No 19
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=78.71 E-value=6.4 Score=30.62 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhhchhhhc-hhhHHHHHHHHHHHH
Q 041202 61 TGTIIGLCVTTPLFIIFS-PVIVPAAIVLALAVT 93 (166)
Q Consensus 61 ~gtvigL~vatPL~iifS-PVLVPaai~~~l~~~ 93 (166)
++.+.|+++..|+.+++. -+++|..++++.++.
T Consensus 29 ~~~~~gl~~g~~l~~~~~~w~~~p~~~lig~~l~ 62 (111)
T TIGR03750 29 VGLAAGLVLGLLLALLAGPWALIPTGALLGPILV 62 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888766666 566676666655443
No 20
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=78.30 E-value=10 Score=26.73 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhCCCCC-chhHHHHHHHHhhhhHHHhhhhhH
Q 041202 86 IVLALAVTGFLTSGAFGLTALSSLSWVLSILRQKTGSV-PEMADQAKKRVAGMADYVGQKTKE 147 (166)
Q Consensus 86 i~~~l~~~gfl~sg~~g~~~ls~lsW~~~y~rg~~p~g-~dqld~Ak~Ri~d~A~~vg~kake 147 (166)
-++++.+.++||+ .++++.-.-.+.|+.. +.. ..++..+.+++..+-+.+-+|-++
T Consensus 14 ~ViGVt~mAiLSG----~gaVstpy~~~~~~~~--~v~~~~~i~~~~~~l~~t~~~l~~Kk~~ 70 (72)
T PF12537_consen 14 GVIGVTLMAILSG----FGAVSTPYYYFSYFRR--PVSRESDINNAERRLWHTRDMLVEKKKR 70 (72)
T ss_pred HHHHHHHHHHHhh----hhHHccHHHHHHHHHh--cCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777773 3333333333333332 222 456777777776655555555544
No 21
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=77.59 E-value=34 Score=27.17 Aligned_cols=15 Identities=7% Similarity=0.266 Sum_probs=7.8
Q ss_pred HhhhchhhhchhhHH
Q 041202 69 VTTPLFIIFSPVIVP 83 (166)
Q Consensus 69 vatPL~iifSPVLVP 83 (166)
+..|++++++.+...
T Consensus 118 i~~~~~l~~~~~~~~ 132 (181)
T PF08006_consen 118 ILSGIILLISGIFGG 132 (181)
T ss_pred HHHHHHHHHHHHHHh
Confidence 355666555554443
No 22
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=76.67 E-value=8.4 Score=37.00 Aligned_cols=37 Identities=14% Similarity=0.104 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhCCCCCchhHHHHHHHHhhhhHHHhhhhhHh
Q 041202 106 LSSLSWVLSILRQKTGSVPEMADQAKKRVAGMADYVGQKTKEV 148 (166)
Q Consensus 106 ls~lsW~~~y~rg~~p~g~dqld~Ak~Ri~d~A~~vg~kake~ 148 (166)
-.+++|++++.-++. -.|.++.|++|+.+ +++|-||+
T Consensus 327 ~~v~t~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~ 363 (639)
T PRK15083 327 SFVVSAILLKTSKVK--EEDDLEAATRRMQD----MKAESKGA 363 (639)
T ss_pred HHHHHHHHHHhcccc--chhhHHHHHHHHHH----hhhccccc
Confidence 356788888776652 12359999999987 45554443
No 23
>PF09583 Phageshock_PspG: Phage shock protein G (Phageshock_PspG); InterPro: IPR014318 This protein previously was designated yjbO in Escherichia coli. It is found only in genomes that have the phage shock operon (psp), but it is only rarely encoded near other psp genes. The psp regulon is upregulated in response to a number of stress conditions, including ethanol, expression of the filamentous phage secretin protein IV and other secretins and heat shock.
Probab=76.08 E-value=17 Score=26.18 Aligned_cols=26 Identities=27% Similarity=0.566 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhh
Q 041202 51 TFLALAGVALTGTIIGLCVTTPLFII 76 (166)
Q Consensus 51 ~LL~LaGlTL~gtvigL~vatPL~ii 76 (166)
..|+++|+|+.|...++++++-+..+
T Consensus 12 ~~Ll~TGvsllgv~aA~~va~~vm~l 37 (65)
T PF09583_consen 12 AMLLVTGVSLLGVLAALAVAFAVMFL 37 (65)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34788999999999999888755443
No 24
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=76.04 E-value=23 Score=24.53 Aligned_cols=13 Identities=46% Similarity=0.675 Sum_probs=7.4
Q ss_pred HHHHhhhhHHHHH
Q 041202 93 TGFLTSGAFGLTA 105 (166)
Q Consensus 93 ~gfl~sg~~g~~~ 105 (166)
.||+.+++.|+++
T Consensus 3 ~g~l~Ga~~Ga~~ 15 (74)
T PF12732_consen 3 LGFLAGAAAGAAA 15 (74)
T ss_pred HHHHHHHHHHHHH
Confidence 4566666666443
No 25
>COG4709 Predicted membrane protein [Function unknown]
Probab=73.79 E-value=57 Score=27.93 Aligned_cols=27 Identities=11% Similarity=-0.116 Sum_probs=15.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 041202 92 VTGFLTSGAFGLTALSSLSWVLSILRQ 118 (166)
Q Consensus 92 ~~gfl~sg~~g~~~ls~lsW~~~y~rg 118 (166)
...+..|.++|+..+.+..-+.+|...
T Consensus 150 ~f~~IGs~lLgl~~~~~if~iv~~~~r 176 (195)
T COG4709 150 FFIGIGSLLLGLGLGIVIFAIVKYASR 176 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777776555555555543
No 26
>TIGR02975 phageshock_pspG phage shock protein G. This protein previously was designated yjbO in E. coli. It is found only in genomes that have the phage shock operon (psp), but only rarely is encoded near other psp genes. The psp regulon is upregulated in response to a number of stress conditions, including ethanol, expression of the filamentous phage secretin protein IV and other secretins, and heat shock.
Probab=71.48 E-value=25 Score=25.23 Aligned_cols=26 Identities=23% Similarity=0.503 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhh
Q 041202 51 TFLALAGVALTGTIIGLCVTTPLFII 76 (166)
Q Consensus 51 ~LL~LaGlTL~gtvigL~vatPL~ii 76 (166)
..|+++|+|+.|...++.+++-+..+
T Consensus 11 ~~Ll~TGisllgv~aA~~va~~vm~l 36 (64)
T TIGR02975 11 VMLMVTGISLLGVLAALGVAVLFMAL 36 (64)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34788999999998888887655443
No 27
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=71.08 E-value=35 Score=33.64 Aligned_cols=22 Identities=23% Similarity=0.599 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhhhchhhhchhh
Q 041202 60 LTGTIIGLCVTTPLFIIFSPVI 81 (166)
Q Consensus 60 L~gtvigL~vatPL~iifSPVL 81 (166)
+.||++|.+++.+++.++-+..
T Consensus 432 i~GTllG~~lg~~ll~l~p~~~ 453 (704)
T TIGR01666 432 IIGTLLGVVIGSPLLYFNPSLE 453 (704)
T ss_pred HHHHHHHHHHHHHHHHHhccHH
Confidence 4699999999999887664433
No 28
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=68.89 E-value=37 Score=33.32 Aligned_cols=19 Identities=26% Similarity=0.693 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhhchhhhc
Q 041202 60 LTGTIIGLCVTTPLFIIFS 78 (166)
Q Consensus 60 L~gtvigL~vatPL~iifS 78 (166)
+.||++|.+++..++.++.
T Consensus 434 i~GTl~G~llg~~l~~l~p 452 (701)
T TIGR01667 434 IIGTVVGLVIGVALHFLIP 452 (701)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 4599999999988765543
No 29
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=68.54 E-value=21 Score=27.72 Aligned_cols=45 Identities=29% Similarity=0.229 Sum_probs=22.8
Q ss_pred HHHHHHHHhhhchhhhchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHhh
Q 041202 62 GTIIGLCVTTPLFIIFSPVIVPAAIVLALAVTGFLTSGAFGLTALSSLSWVL-SILRQ 118 (166)
Q Consensus 62 gtvigL~vatPL~iifSPVLVPaai~~~l~~~gfl~sg~~g~~~ls~lsW~~-~y~rg 118 (166)
|...|+++..=-|++-|++.--+ =.++.+|+ ..|+.+|.| +|-|.
T Consensus 47 Gi~~G~~vG~~~fl~~~~~~~A~----nwavgsF~--------l~s~~~we~Cr~~r~ 92 (118)
T PF12597_consen 47 GIAGGFGVGGLRFLFTSNPRKAA----NWAVGSFF--------LGSLGSWEYCRYNRR 92 (118)
T ss_pred HHHHHHHHHhhhhcccCCCccch----hhhhHHHH--------HHHHHHHHHHHHHHH
Confidence 33344444444577777766543 23333333 246678876 44433
No 30
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=68.39 E-value=10 Score=30.51 Aligned_cols=48 Identities=23% Similarity=0.261 Sum_probs=33.9
Q ss_pred chhhhch-hhHHHHHHHHHHHHHH-------HhhhhHHHHHHHHHHHHHHHHhhCC
Q 041202 73 LFIIFSP-VIVPAAIVLALAVTGF-------LTSGAFGLTALSSLSWVLSILRQKT 120 (166)
Q Consensus 73 L~iifSP-VLVPaai~~~l~~~gf-------l~sg~~g~~~ls~lsW~~~y~rg~~ 120 (166)
-+=.||| =|=|..++.+.++.++ +..-+.++..++..-|+|.|.||.|
T Consensus 80 e~GfFsP~SwWPl~la~~~al~~lGla~g~Wl~~iG~~~~i~~~~G~vfEy~rg~~ 135 (137)
T PF12270_consen 80 ELGFFSPHSWWPLVLAAAAALVFLGLAFGWWLILIGAVLLIVAVVGWVFEYYRGPE 135 (137)
T ss_pred CcCcCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeccCcc
Confidence 3456998 6777666655444432 4445667788899999999999976
No 31
>PRK00523 hypothetical protein; Provisional
Probab=67.89 E-value=29 Score=25.40 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhCCCCCchhHHHHHHHHhhhhHHHhhhhhH
Q 041202 107 SSLSWVLSILRQKTGSVPEMADQAKKRVAGMADYVGQKTKE 147 (166)
Q Consensus 107 s~lsW~~~y~rg~~p~g~dqld~Ak~Ri~d~A~~vg~kake 147 (166)
-+--|+-||++...|...|. |..+..++|+|--|
T Consensus 25 iark~~~k~l~~NPpine~m-------ir~M~~QMGqKPSe 58 (72)
T PRK00523 25 VSKKMFKKQIRENPPITENM-------IRAMYMQMGRKPSE 58 (72)
T ss_pred HHHHHHHHHHHHCcCCCHHH-------HHHHHHHhCCCccH
Confidence 34567888888765544432 45566778888765
No 32
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=65.71 E-value=20 Score=30.09 Aligned_cols=59 Identities=20% Similarity=0.324 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhhhchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041202 47 PLGGTFLALAGVALTGTIIGLCVTTPLFIIFSPVIVPAAIVLALAVTGFLTSGAFGLTALSSLSWVL 113 (166)
Q Consensus 47 ~~gg~LL~LaGlTL~gtvigL~vatPL~iifSPVLVPaai~~~l~~~gfl~sg~~g~~~ls~lsW~~ 113 (166)
=++|.+|++.|+.+.-..+...+. +.|++-...- .++...+|+.|..+.+..+ +++|++
T Consensus 187 R~~G~llmf~G~~~~~~~l~~l~~------~~P~lg~l~~-~~~~~~~~~~s~~lsl~~I-a~aW~~ 245 (248)
T PF07787_consen 187 RFIGWLLMFIGFFLLFSPLYTLVD------WIPLLGNLVG-FGLFLVAFIISFSLSLLTI-ALAWLF 245 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh------hhceeechhh-hHHHHHHHHHHHHHHHHHH-HHhhee
Confidence 356777777787776665543322 3344333211 2222233555555555443 467765
No 33
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=64.92 E-value=32 Score=23.81 Aligned_cols=17 Identities=18% Similarity=0.020 Sum_probs=7.3
Q ss_pred HhhhhHHHHHHHHHHHH
Q 041202 96 LTSGAFGLTALSSLSWV 112 (166)
Q Consensus 96 l~sg~~g~~~ls~lsW~ 112 (166)
+.+-.+|.++-+.+.-+
T Consensus 2 ~~g~l~Ga~~Ga~~glL 18 (74)
T PF12732_consen 2 LLGFLAGAAAGAAAGLL 18 (74)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 34
>PRK10404 hypothetical protein; Provisional
Probab=64.21 E-value=13 Score=28.03 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=11.9
Q ss_pred hHHHHHHHHhhhhHHHhhhhhHhhH
Q 041202 126 MADQAKKRVAGMADYVGQKTKEVGQ 150 (166)
Q Consensus 126 qld~Ak~Ri~d~A~~vg~kake~Gq 150 (166)
.++.+|.|+.|....+.+|+|+..+
T Consensus 46 ~L~~ar~~l~~~~~~~~~~~k~aa~ 70 (101)
T PRK10404 46 ALDDVKKRVSQASDSYYYRAKQAVY 70 (101)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444444444444444445555443
No 35
>PRK11365 ssuC alkanesulfonate transporter permease subunit; Provisional
Probab=63.87 E-value=71 Score=26.78 Aligned_cols=11 Identities=9% Similarity=0.105 Sum_probs=5.6
Q ss_pred CCchhHHHHHH
Q 041202 122 SVPEMADQAKK 132 (166)
Q Consensus 122 ~g~dqld~Ak~ 132 (166)
..+|.+|.||.
T Consensus 150 i~~~~v~~Ar~ 160 (263)
T PRK11365 150 IDRGLVEMARS 160 (263)
T ss_pred CCHHHHHHHHH
Confidence 34555555553
No 36
>PRK01844 hypothetical protein; Provisional
Probab=63.43 E-value=40 Score=24.64 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhCCCCCchhHHHHHHHHhhhhHHHhhhhhH
Q 041202 107 SSLSWVLSILRQKTGSVPEMADQAKKRVAGMADYVGQKTKE 147 (166)
Q Consensus 107 s~lsW~~~y~rg~~p~g~dqld~Ak~Ri~d~A~~vg~kake 147 (166)
-+--|+-||++...|...|. +..+-.++|+|.-|
T Consensus 24 ~ark~~~k~lk~NPpine~m-------ir~Mm~QMGqkPSe 57 (72)
T PRK01844 24 IARKYMMNYLQKNPPINEQM-------LKMMMMQMGQKPSQ 57 (72)
T ss_pred HHHHHHHHHHHHCCCCCHHH-------HHHHHHHhCCCccH
Confidence 34568889998765544432 44556678888765
No 37
>COG4709 Predicted membrane protein [Function unknown]
Probab=62.90 E-value=98 Score=26.51 Aligned_cols=6 Identities=0% Similarity=0.108 Sum_probs=2.5
Q ss_pred CCCHHH
Q 041202 33 GPSASK 38 (166)
Q Consensus 33 ~Psssq 38 (166)
.+|.++
T Consensus 75 ~~n~~~ 80 (195)
T COG4709 75 QKNVRR 80 (195)
T ss_pred ccchHH
Confidence 334444
No 38
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=62.33 E-value=67 Score=25.93 Aligned_cols=10 Identities=0% Similarity=0.019 Sum_probs=4.5
Q ss_pred HHHHHHHHhh
Q 041202 127 ADQAKKRVAG 136 (166)
Q Consensus 127 ld~Ak~Ri~d 136 (166)
.++.++-+.+
T Consensus 70 ~~~~~~~l~e 79 (199)
T PF10112_consen 70 YEYIREILEE 79 (199)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 39
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=62.19 E-value=21 Score=30.86 Aligned_cols=42 Identities=14% Similarity=0.126 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhhhchhhhchhhHHHHHHHHHHHHHHHhh
Q 041202 55 LAGVALTGTIIGLCVTTPLFIIFSPVIVPAAIVLALAVTGFLTS 98 (166)
Q Consensus 55 LaGlTL~gtvigL~vatPL~iifSPVLVPaai~~~l~~~gfl~s 98 (166)
+.+..+.+.++|+++- -.+++.|+-|++++++++.+.+--+-
T Consensus 35 ~l~~~~v~v~ig~l~~--~~~~~~i~gi~~g~l~am~vl~rra~ 76 (224)
T PF13829_consen 35 FLGPIAVFVLIGLLFG--SWWYWLIIGILLGLLAAMIVLSRRAQ 76 (224)
T ss_pred HHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666 34556677777777777776665553
No 40
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=62.01 E-value=1.3e+02 Score=27.79 Aligned_cols=85 Identities=26% Similarity=0.288 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhh--chhhHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHhh
Q 041202 48 LGGTFLALAGVALTGTIIGLCVTTPLFIIF--SPVIVPAAIVLALAVTGFLTS-------GAFGLTALSSLSWVLSILRQ 118 (166)
Q Consensus 48 ~gg~LL~LaGlTL~gtvigL~vatPL~iif--SPVLVPaai~~~l~~~gfl~s-------g~~g~~~ls~lsW~~~y~rg 118 (166)
..|..+.=+=-=+.||++|.+++.=+..+| +|++.-.++.+.+....+++. =+|.+++.+...-.+..+.
T Consensus 41 ~~G~~~~k~~~R~~GT~iGa~~~~~lv~~~~~~p~l~~~~lal~i~~c~~~~~~~~~~~~y~~~lag~T~~iv~~~~~~- 119 (650)
T PF04632_consen 41 SSGASLSKGLYRLIGTLIGAAAGLLLVALFPQSPLLFLLALALWIGLCLYLSLLDRNFRSYAFMLAGYTAAIVALPAVG- 119 (650)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccc-
Confidence 333334333344555555555554444344 777766666666555555554 2334444444433333221
Q ss_pred CCCCCchhHHHHHHHHhh
Q 041202 119 KTGSVPEMADQAKKRVAG 136 (166)
Q Consensus 119 ~~p~g~dqld~Ak~Ri~d 136 (166)
+| .+-.|.+-.|+.|
T Consensus 120 -~p--~~~f~~a~~R~~e 134 (650)
T PF04632_consen 120 -NP--EQVFDLALWRVLE 134 (650)
T ss_pred -Cc--cHHHHHHHHHHHH
Confidence 22 2235556666555
No 41
>PRK04897 heat shock protein HtpX; Provisional
Probab=61.16 E-value=67 Score=27.91 Aligned_cols=39 Identities=15% Similarity=0.008 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhCCCCCchhHHHHHHHHhhhhHHHhhh
Q 041202 106 LSSLSWVLSILRQKTGSVPEMADQAKKRVAGMADYVGQK 144 (166)
Q Consensus 106 ls~lsW~~~y~rg~~p~g~dqld~Ak~Ri~d~A~~vg~k 144 (166)
...-.|+.....+..|..+++-.+-++++.+.+..++-.
T Consensus 58 ~~~~~~~~~~~~~a~~v~~~~~p~L~~~v~~la~~~gip 96 (298)
T PRK04897 58 IFQSTNVVMSMNHAREVTEEEAPELWHIVEDMAMVAQIP 96 (298)
T ss_pred HHhhHHHHHHhCCCEECChhhhHHHHHHHHHHHHHcCCC
Confidence 344557777666777777766666677777766665533
No 42
>COG0600 TauC ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]
Probab=60.42 E-value=1e+02 Score=26.77 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=40.9
Q ss_pred HhhhchhhhchhhHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHhhCCCCCchhHHHHHH
Q 041202 69 VTTPLFIIFSPVIVPAAIVLALAVTGFLTSGAFGLTA-LSSLSWVLSILRQKTGSVPEMADQAKK 132 (166)
Q Consensus 69 vatPL~iifSPVLVPaai~~~l~~~gfl~sg~~g~~~-ls~lsW~~~y~rg~~p~g~dqld~Ak~ 132 (166)
..-|++.++-||=.-|-+-+.++..|+--..-+.++. .+.+-=+.|-..|...+.+|.+|.+|.
T Consensus 97 ~l~P~i~~l~~iP~lA~~Pl~ilwfG~g~~s~i~i~~~~~ffpi~int~~Gvr~v~~~~~~~ar~ 161 (258)
T COG0600 97 LLDPLVQVLRPIPPLALAPLAILWFGIGETSKIVIAVLGAFFPILINTLDGVRSVDPDLLELART 161 (258)
T ss_pred HHhHHHHHHhcCCHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3457777777764444445566666665555666666 444555667777877777787777774
No 43
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=59.52 E-value=35 Score=24.37 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhCCCCCchhHHHHHHHHhhhhHHHhhhhhH
Q 041202 108 SLSWVLSILRQKTGSVPEMADQAKKRVAGMADYVGQKTKE 147 (166)
Q Consensus 108 ~lsW~~~y~rg~~p~g~dqld~Ak~Ri~d~A~~vg~kake 147 (166)
+--++-||++...|...|+ |..+..++|+|.-|
T Consensus 18 ar~~~~k~l~~NPpine~m-------ir~M~~QMG~kpSe 50 (64)
T PF03672_consen 18 ARKYMEKQLKENPPINEKM-------IRAMMMQMGRKPSE 50 (64)
T ss_pred HHHHHHHHHHHCCCCCHHH-------HHHHHHHhCCCccH
Confidence 3567778887654443332 45567788888765
No 44
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=58.89 E-value=30 Score=26.16 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=18.1
Q ss_pred HHHHHhhhhH-HHHHHHHHHHHHHHHhhCCCC
Q 041202 92 VTGFLTSGAF-GLTALSSLSWVLSILRQKTGS 122 (166)
Q Consensus 92 ~~gfl~sg~~-g~~~ls~lsW~~~y~rg~~p~ 122 (166)
+.||+++-.+ |+..-.++.|.||+++..+++
T Consensus 37 ~~Gi~~~~~l~g~i~g~~~~~~~r~lK~g~g~ 68 (101)
T PRK13707 37 GWGITTSKYLFGIIAAVLVWFGIRKLKKGRGS 68 (101)
T ss_pred HHHHHHchHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 3344444333 333334567899999887654
No 45
>PRK01345 heat shock protein HtpX; Provisional
Probab=56.99 E-value=76 Score=28.01 Aligned_cols=36 Identities=11% Similarity=0.005 Sum_probs=18.8
Q ss_pred HHHHHHHhhCCCCCchhHHHHHHHHhhhhHHHhhhh
Q 041202 110 SWVLSILRQKTGSVPEMADQAKKRVAGMADYVGQKT 145 (166)
Q Consensus 110 sW~~~y~rg~~p~g~dqld~Ak~Ri~d~A~~vg~ka 145 (166)
.|+....-+.++..+++-..-++++.+.+...+-+.
T Consensus 49 ~~~~~~~~~a~~v~~~~~p~L~~~v~~La~~agi~~ 84 (317)
T PRK01345 49 DKMVLRMYGAQEVDERSAPELYRMVRDLARRAGLPM 84 (317)
T ss_pred HHHHHHHcCCeECCcccCHHHHHHHHHHHHHcCCCC
Confidence 444444445555555544455666666655555443
No 46
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=54.71 E-value=51 Score=23.36 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=6.3
Q ss_pred hhhhHhhHHHhhHhh
Q 041202 143 QKTKEVGQDIQSKVH 157 (166)
Q Consensus 143 ~kake~Gq~iq~ka~ 157 (166)
+++++.-+++++|.+
T Consensus 54 ~~~n~l~~dv~~k~~ 68 (90)
T PF06103_consen 54 HNTNELLEDVNEKLE 68 (90)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333344444443
No 47
>PRK15100 amino acid ABC transporter permease; Provisional
Probab=53.14 E-value=1.2e+02 Score=24.55 Aligned_cols=10 Identities=10% Similarity=-0.140 Sum_probs=6.3
Q ss_pred CchhHHHHHH
Q 041202 123 VPEMADQAKK 132 (166)
Q Consensus 123 g~dqld~Ak~ 132 (166)
..++.|.||.
T Consensus 115 ~~~~~eAA~~ 124 (220)
T PRK15100 115 DKGQWEAAAS 124 (220)
T ss_pred CHhHHHHHHH
Confidence 3566777764
No 48
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=51.98 E-value=2.1e+02 Score=26.96 Aligned_cols=54 Identities=20% Similarity=0.314 Sum_probs=34.9
Q ss_pred HHHHHHhhhchhhhchhh--HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HhhCCCCCchh
Q 041202 64 IIGLCVTTPLFIIFSPVI--VPAAIVLALAVTGFLTSGAFGLTALSSLSWVLSI-LRQKTGSVPEM 126 (166)
Q Consensus 64 vigL~vatPL~iifSPVL--VPaai~~~l~~~gfl~sg~~g~~~ls~lsW~~~y-~rg~~p~g~dq 126 (166)
...+++..|++++|+-+. +|+++.+--++.++.+ ..-.|+.+| ++...|.-++-
T Consensus 227 m~~m~~~~Pim~~~~g~~~~~PaallLYWv~snlwt---------l~Qq~i~~~~l~~~~P~~~~~ 283 (429)
T PRK00247 227 LIVMAILAPIFPLSLGLTGPFPTAIALYWVANNLWT---------LIQNIIMYLILERKYPLTDEF 283 (429)
T ss_pred HHHHHHHhHHHHHHHHHhccchHHHHHHHHHhhHHH---------HHHHHHHHHHHHHhcCCCcch
Confidence 344556788877665544 6999999988888776 335665553 44456655443
No 49
>PRK10404 hypothetical protein; Provisional
Probab=51.77 E-value=23 Score=26.78 Aligned_cols=41 Identities=12% Similarity=0.090 Sum_probs=33.4
Q ss_pred CCchhHHHHHHHHhhhhHHHhhhhhHhhHHHhhHhhhhcCC
Q 041202 122 SVPEMADQAKKRVAGMADYVGQKTKEVGQDIQSKVHEAGGK 162 (166)
Q Consensus 122 ~g~dqld~Ak~Ri~d~A~~vg~kake~Gq~iq~ka~da~~~ 162 (166)
...++.+..|.|+.+.-....++..+..+.+..|++++...
T Consensus 31 ~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~ 71 (101)
T PRK10404 31 PADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYR 71 (101)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 35677999999999988889988888888888887776544
No 50
>PF13886 DUF4203: Domain of unknown function (DUF4203)
Probab=51.42 E-value=1.2e+02 Score=24.54 Aligned_cols=83 Identities=18% Similarity=0.104 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhhchhh-------hchhhHHHHHHHHHHHHHHH-h---
Q 041202 37 SKVLAVLAMLPLGGTFLAL--------AGVALTGTIIGLCVTTPLFII-------FSPVIVPAAIVLALAVTGFL-T--- 97 (166)
Q Consensus 37 sqvl~~~tll~~gg~LL~L--------aGlTL~gtvigL~vatPL~ii-------fSPVLVPaai~~~l~~~gfl-~--- 97 (166)
.+...+++.+..|..+..+ .|+.+.|...|+.++.-++.. ..|.+++..+...+.+.+.+ +
T Consensus 53 ~~~~~~v~g~~~G~i~g~~~~~~~~~~~glf~~G~~~G~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~ 132 (210)
T PF13886_consen 53 NLGASVVAGVLGGIILGLLWWAFLIYSVGLFLVGLLLGFLLAMWILSLPPGGLIIPHPDWVFWVLFLCLALVFGLLTLKF 132 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCCchhHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555544443 788888899998888655432 45667777665554333211 1
Q ss_pred -----hhhHHHHHHHHHHHHHHHHhhC
Q 041202 98 -----SGAFGLTALSSLSWVLSILRQK 119 (166)
Q Consensus 98 -----sg~~g~~~ls~lsW~~~y~rg~ 119 (166)
--+..+-+-..+.|=.+|+-+.
T Consensus 133 ~k~~~I~~ts~~Ga~~i~~giD~f~~~ 159 (210)
T PF13886_consen 133 QKPFLIVSTSFFGAYAIVLGIDYFVGA 159 (210)
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHhcC
Confidence 0112222334567777888775
No 51
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=51.11 E-value=47 Score=30.00 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=26.8
Q ss_pred HHHhhhchhhhchhhHHHHHHHHHHHHHHHh
Q 041202 67 LCVTTPLFIIFSPVIVPAAIVLALAVTGFLT 97 (166)
Q Consensus 67 L~vatPL~iifSPVLVPaai~~~l~~~gfl~ 97 (166)
+....|++++|+=+-+|+++.+-.++.++++
T Consensus 217 M~~imPim~~~~~~~fPaGL~LYW~~snl~s 247 (329)
T PRK01315 217 LLYLFPLMFLVSGIAFPVGVLFYWLTSNVWT 247 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999998887766
No 52
>PRK03072 heat shock protein HtpX; Provisional
Probab=50.84 E-value=1.6e+02 Score=25.51 Aligned_cols=39 Identities=8% Similarity=-0.121 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhCCCCCchhHHHHHHHHhhhhHHHhhhhh
Q 041202 108 SLSWVLSILRQKTGSVPEMADQAKKRVAGMADYVGQKTK 146 (166)
Q Consensus 108 ~lsW~~~y~rg~~p~g~dqld~Ak~Ri~d~A~~vg~kak 146 (166)
...|+.+..-+.++..+++-..-++.+.+.+..++-+..
T Consensus 50 ~s~~~~~~~~~~~~v~~~~~p~L~~~v~~la~~~g~p~p 88 (288)
T PRK03072 50 NSDKLALRAMHAQPVSEVQAPAMYRIVRELSTAARQPMP 88 (288)
T ss_pred HhHHHHHHhcCCEECChhhhHHHHHHHHHHHHHcCCCCC
Confidence 346666655566676666544556666666666554433
No 53
>PF01970 TctA: Tripartite tricarboxylate transporter TctA family; InterPro: IPR002823 Members of this prokaryotic family have no known function. Members are predicted to be integral membrane proteins and are similar to a protein in a tartrate utilisation region (TAR) of Agrobacterium vitis a common pathogen of grapevine. Most grapevine strains utilise tartrate, an abundant compound in grapevine [].
Probab=49.59 E-value=39 Score=31.12 Aligned_cols=31 Identities=32% Similarity=0.605 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhhhchhhhchhhHHHHHH
Q 041202 57 GVALTGTIIGLCVTTPLFIIFSPVIVPAAIV 87 (166)
Q Consensus 57 GlTL~gtvigL~vatPL~iifSPVLVPaai~ 87 (166)
++...++++|-+++.+++++|+|.+-|.+..
T Consensus 93 ~~a~~~S~~G~~is~~~l~~~a~~la~~a~~ 123 (419)
T PF01970_consen 93 RLAAIGSFIGGLISAILLILFAPPLAPFALK 123 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888888888888888876643
No 54
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=49.00 E-value=42 Score=28.40 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhhhchhhh
Q 041202 57 GVALTGTIIGLCVTTPLFIIF 77 (166)
Q Consensus 57 GlTL~gtvigL~vatPL~iif 77 (166)
||++++.++++-+++=+..++
T Consensus 1 gl~~a~~i~~~w~~~~~~~~~ 21 (225)
T cd03513 1 GLTLAGLIIAAWLASHVHALF 21 (225)
T ss_pred ChhHHHHHHHHHHHHHHHHHH
Confidence 455555555555444444333
No 55
>PF14333 DUF4389: Domain of unknown function (DUF4389)
Probab=48.88 E-value=97 Score=22.16 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCC
Q 041202 102 GLTALSSLSWVLSILRQKTGS 122 (166)
Q Consensus 102 g~~~ls~lsW~~~y~rg~~p~ 122 (166)
.+..++.+.|++.-++|+.|.
T Consensus 25 ~~~~~~~~q~~~~L~tg~~p~ 45 (80)
T PF14333_consen 25 VLGVLVLIQWFAILFTGRYPE 45 (80)
T ss_pred HHHHHHHHHHHHHHHcCCCCH
Confidence 445678899999999999874
No 56
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=47.86 E-value=56 Score=25.27 Aligned_cols=12 Identities=8% Similarity=-0.133 Sum_probs=5.9
Q ss_pred HHHHHHHHhhCC
Q 041202 109 LSWVLSILRQKT 120 (166)
Q Consensus 109 lsW~~~y~rg~~ 120 (166)
+.-+|...||..
T Consensus 94 ~~i~y~a~rg~~ 105 (115)
T PF05915_consen 94 TRIAYYAWRGYK 105 (115)
T ss_pred HHHHHHHHcCCC
Confidence 334455556654
No 57
>PF03773 DUF318: Predicted permease; InterPro: IPR005524 This family of predicted integral membrane proteins.
Probab=47.63 E-value=1.1e+02 Score=26.48 Aligned_cols=47 Identities=23% Similarity=0.411 Sum_probs=25.4
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHhhCC
Q 041202 74 FIIFSPVIVPAAIVLALAVTGFLTSG---AFGLTALSSLSWVLSILRQKT 120 (166)
Q Consensus 74 ~iifSPVLVPaai~~~l~~~gfl~sg---~~g~~~ls~lsW~~~y~rg~~ 120 (166)
|++.||++-|..+.......|.-..- .+++...-...|+.+.+..+.
T Consensus 89 Fl~a~p~~n~~~~~~~~~~lg~~~~~~r~~~~~~~~~~~g~l~~~~~~~~ 138 (307)
T PF03773_consen 89 FLLASPLLNPIVLLLTWAALGWKFTLIRIVLGLILAILVGLLFSRLFKRR 138 (307)
T ss_pred HHHhhHHhhHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 66777888887777766655532221 122222234556666665543
No 58
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=46.76 E-value=94 Score=27.26 Aligned_cols=28 Identities=14% Similarity=0.024 Sum_probs=18.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHhhCCC
Q 041202 94 GFLTSGAFGLTALSSLSWVLSILRQKTG 121 (166)
Q Consensus 94 gfl~sg~~g~~~ls~lsW~~~y~rg~~p 121 (166)
..+...+..+..+++..=+.||+|.-.|
T Consensus 281 ~~l~~~g~~lg~lgs~~s~~r~Lr~~~~ 308 (309)
T TIGR00439 281 GLLLGFCIALGVVGAWLATTQHLLCFKA 308 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444455666677777778899887654
No 59
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=46.45 E-value=28 Score=27.06 Aligned_cols=39 Identities=8% Similarity=0.203 Sum_probs=27.6
Q ss_pred chhHHHHHHHHhhhhHHHhhhhhHhhHHHhhHhhhhcCC
Q 041202 124 PEMADQAKKRVAGMADYVGQKTKEVGQDIQSKVHEAGGK 162 (166)
Q Consensus 124 ~dqld~Ak~Ri~d~A~~vg~kake~Gq~iq~ka~da~~~ 162 (166)
-|+.+.+|.|+...-+++.++..+.+..+..+.+++...
T Consensus 36 ~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~ 74 (104)
T COG4575 36 GDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADA 74 (104)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 456777888887777777777777777666676666543
No 60
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=46.14 E-value=2e+02 Score=25.56 Aligned_cols=29 Identities=34% Similarity=0.556 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhhhchhhhchhh-HHHHHHH
Q 041202 58 VALTGTIIGLCVTTPLFIIFSPVI-VPAAIVL 88 (166)
Q Consensus 58 lTL~gtvigL~vatPL~iifSPVL-VPaai~~ 88 (166)
+.+.|.++||++ -|++.|.|.. .|+.+.+
T Consensus 90 ~~~~g~i~glvl--~lv~~F~~~~~sp~l~~~ 119 (274)
T PF12811_consen 90 LAIVGAIGGLVL--ALVISFKRKVWSPALAPI 119 (274)
T ss_pred HHHHHHHHHHHH--HHHHHhCCccCChHHHHH
Confidence 456777777666 4677776655 5654433
No 61
>COG4818 Predicted membrane protein [Function unknown]
Probab=45.93 E-value=63 Score=25.19 Aligned_cols=48 Identities=23% Similarity=0.348 Sum_probs=30.3
Q ss_pred hchhhhchhhHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHhhC
Q 041202 72 PLFIIFSPVIVPAAIVLALAVTGFLTSGAFGLTA-LSSLSWVLSILRQK 119 (166)
Q Consensus 72 PL~iifSPVLVPaai~~~l~~~gfl~sg~~g~~~-ls~lsW~~~y~rg~ 119 (166)
--++.|+|+++=..++.+.=..|-+.|+..++++ +-++..|||-.||.
T Consensus 37 QS~ltF~~l~~l~ill~~iP~Ig~lls~~v~l~a~iLwlv~mykAyrGe 85 (105)
T COG4818 37 QSFLTFLGLWLLIILLAFIPYIGWLLSGLVGLAAFILWLVCMYKAYRGE 85 (105)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHcCC
Confidence 3456667776666665555555777777777543 33445578888884
No 62
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=45.52 E-value=1.5e+02 Score=23.37 Aligned_cols=21 Identities=19% Similarity=0.074 Sum_probs=8.5
Q ss_pred hchhhHHHHHHHHHHHHHHHh
Q 041202 77 FSPVIVPAAIVLALAVTGFLT 97 (166)
Q Consensus 77 fSPVLVPaai~~~l~~~gfl~ 97 (166)
++++..+....+.++.+.++.
T Consensus 33 l~~~~s~~lg~~~lAlg~vL~ 53 (191)
T PF04156_consen 33 LGALISFILGIALLALGVVLL 53 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443343333
No 63
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=44.96 E-value=1.2e+02 Score=26.55 Aligned_cols=25 Identities=12% Similarity=-0.120 Sum_probs=17.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhCCC
Q 041202 97 TSGAFGLTALSSLSWVLSILRQKTG 121 (166)
Q Consensus 97 ~sg~~g~~~ls~lsW~~~y~rg~~p 121 (166)
...++.++.+++..=+.||+|...|
T Consensus 284 ~~~~~~ig~l~s~~s~~r~L~~~~~ 308 (309)
T PRK11026 284 LLVCSMIGWVAAWLATVQHLRRFTP 308 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4455566777777778899887654
No 64
>PRK03982 heat shock protein HtpX; Provisional
Probab=44.30 E-value=1.8e+02 Score=24.94 Aligned_cols=36 Identities=11% Similarity=-0.047 Sum_probs=22.9
Q ss_pred HHHHHHHHhhCCCCCchhHHHHHHHHhhhhHHHhhh
Q 041202 109 LSWVLSILRQKTGSVPEMADQAKKRVAGMADYVGQK 144 (166)
Q Consensus 109 lsW~~~y~rg~~p~g~dqld~Ak~Ri~d~A~~vg~k 144 (166)
-.|+...+.+..|..+++-.+-++++.+.+...+-+
T Consensus 49 ~~~i~~~~~~~~~l~~~~~p~L~~~v~~la~~~g~~ 84 (288)
T PRK03982 49 SDKIVLASYNARIVSEEEAPELYRIVERLAERANIP 84 (288)
T ss_pred hHHHHHHhcCCEECChhhhHHHHHHHHHHHHHcCCC
Confidence 367777777777766655555666677666665533
No 65
>TIGR02805 exbB2 tonB-system energizer ExbB, group 2. Members of this protein family appear to be the ExbB protein of an ExbBD proton-transporting membrane complex that, by means of TonB, energizes transport by TonB-dependent receptors. Note that this family represents one of at least two distinct groups TolQ homologs designated ExbB - see also TIGR02797. Each group associates with a distinct group of ExbD proteins, and a single species may have two ExbB/ExbD/TonB systems.
Probab=43.86 E-value=54 Score=26.48 Aligned_cols=57 Identities=26% Similarity=0.166 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhhchhhhchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhC
Q 041202 60 LTGTIIGLCVTTPLFIIFSPVIVPAAIVLALAVTGFLTSGAFGLTALSSLSWVLSILRQK 119 (166)
Q Consensus 60 L~gtvigL~vatPL~iifSPVLVPaai~~~l~~~gfl~sg~~g~~~ls~lsW~~~y~rg~ 119 (166)
|.|||+|++.+.=-+=.. .--=|..+..++..+=.-+..++.++ -...-.|||++++
T Consensus 70 LLGTV~GmI~~F~~lg~~-g~~~~~~la~GIs~ALitTa~GL~VA--Ipali~yn~l~~r 126 (138)
T TIGR02805 70 LLGTVIGIMVTFYQMGHG-GGIDPSVIMLGLSLALKATALGLLVA--IPSLVFYNALLRK 126 (138)
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 457888887654433221 11124444444444433333333333 3334568888765
No 66
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=42.95 E-value=1.4e+02 Score=24.68 Aligned_cols=18 Identities=11% Similarity=0.075 Sum_probs=9.1
Q ss_pred CCCCCchhHHHHHHHHhh
Q 041202 119 KTGSVPEMADQAKKRVAG 136 (166)
Q Consensus 119 ~~p~g~dqld~Ak~Ri~d 136 (166)
|+-...+.+|.|+..-.+
T Consensus 80 R~~~I~~~L~~Ae~~~~e 97 (205)
T PRK06231 80 RKELIEAEINQANELKQQ 97 (205)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444445556666554433
No 67
>TIGR01597 PYST-B Plasmodium yoelii subtelomeric family PYST-B. This model represents a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. There are no obvious homologs to these genes in any other organism.
Probab=42.94 E-value=55 Score=29.04 Aligned_cols=12 Identities=8% Similarity=0.210 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhh
Q 041202 107 SSLSWVLSILRQ 118 (166)
Q Consensus 107 s~lsW~~~y~rg 118 (166)
-...|-|+|++-
T Consensus 234 ~~~~~~~qy~~~ 245 (255)
T TIGR01597 234 YWSIWRFQYVKL 245 (255)
T ss_pred HHHHHHHHHHHH
Confidence 346788888753
No 68
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=42.94 E-value=3.4e+02 Score=26.80 Aligned_cols=86 Identities=19% Similarity=0.264 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhh--chhhHHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHHHHHhh
Q 041202 48 LGGTFLALAGVALTGTIIGLCVTTPLFIIF--SPVIVPAAIVLALAVTGFLT-------SGAFGLTALSSLSWVLSILRQ 118 (166)
Q Consensus 48 ~gg~LL~LaGlTL~gtvigL~vatPL~iif--SPVLVPaai~~~l~~~gfl~-------sg~~g~~~ls~lsW~~~y~rg 118 (166)
..|..+-=+---+.||++|-+++.=+..+| .|++.=.++.+.+.+..+++ |=+|.+++.+...=.+-.+
T Consensus 57 ~~G~v~~K~~~Ri~GTliGa~~~l~l~~~f~~~p~l~~l~l~lWig~c~~~s~l~r~~~sY~~~LaGyTa~iI~~~~~-- 134 (652)
T PRK10631 57 FSGAIRYRGMLRIIGTFIGCIAALVIIIATIRAPLLMILLCCIWAGFCTWISSLVRVENSYAWGLAGYTALIIVITIQ-- 134 (652)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcc--
Confidence 344444444455677777777766666666 47776555554444333333 2255555555443333322
Q ss_pred CCCCCchhHHHHHHHHhhh
Q 041202 119 KTGSVPEMADQAKKRVAGM 137 (166)
Q Consensus 119 ~~p~g~dqld~Ak~Ri~d~ 137 (166)
.+| .+-.|.|-.|+.|.
T Consensus 135 ~~p--~~~f~~A~~R~~Ei 151 (652)
T PRK10631 135 PEP--LLTPQFAVERCSEI 151 (652)
T ss_pred CCc--hHHHHHHHHHHHHH
Confidence 233 22356777776663
No 69
>PRK09776 putative diguanylate cyclase; Provisional
Probab=42.00 E-value=2.2e+02 Score=27.70 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhhhchhhh
Q 041202 60 LTGTIIGLCVTTPLFIIF 77 (166)
Q Consensus 60 L~gtvigL~vatPL~iif 77 (166)
..|..+|..+.+|+++..
T Consensus 141 ~~~~~~g~l~~~p~~l~~ 158 (1092)
T PRK09776 141 VLSEAIGMLALVPLGLLF 158 (1092)
T ss_pred HHHHHHHHHHHhhHhhhc
Confidence 467888999999988875
No 70
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=41.99 E-value=2.2e+02 Score=24.18 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=12.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHH
Q 041202 91 AVTGFLTSGAFGLTALSSLSWVLS 114 (166)
Q Consensus 91 ~~~gfl~sg~~g~~~ls~lsW~~~ 114 (166)
.-++++..|+.--..+|.+.|..+
T Consensus 73 ~~~~l~~~Gglwy~~lsl~~~~l~ 96 (284)
T PF12805_consen 73 EHALLFLAGGLWYLLLSLLWWPLR 96 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334455555555555565555543
No 71
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=41.90 E-value=1.6e+02 Score=26.76 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041202 46 LPLGGTFLALAGVALTGTII 65 (166)
Q Consensus 46 l~~gg~LL~LaGlTL~gtvi 65 (166)
-.+|.++|.+.|+..+-++.
T Consensus 179 CsvGSA~LT~IGLaAAKaAA 198 (295)
T TIGR01478 179 CALSSALLGNIGIAAAKTAA 198 (295)
T ss_pred eccHHHHHHHHHHHHHHHHH
Confidence 45666777777777765443
No 72
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=41.70 E-value=1.9e+02 Score=24.12 Aligned_cols=41 Identities=15% Similarity=0.082 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhCCCCCch-----hHHHHHHHHhhhhHHHhhhhhH
Q 041202 106 LSSLSWVLSILRQKTGSVPE-----MADQAKKRVAGMADYVGQKTKE 147 (166)
Q Consensus 106 ls~lsW~~~y~rg~~p~g~d-----qld~Ak~Ri~d~A~~vg~kake 147 (166)
+...+|+.+.++. ||-..| ++.+.-+||..+-..++..++|
T Consensus 60 ~~~~~~~l~~~k~-~p~m~Ev~YvW~LKq~ln~I~rkl~~ik~aa~~ 105 (165)
T PF11286_consen 60 LLLTSALLRQLKT-HPFMTEVYYVWQLKQLLNKIYRKLHKIKAAAEQ 105 (165)
T ss_pred HHHHHHHHHHHcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3446677777765 343322 4666677887777777766654
No 73
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=41.57 E-value=1.5e+02 Score=24.51 Aligned_cols=47 Identities=28% Similarity=0.442 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHh------hhchhhhchhhHHHHHHHHHHHHHHHhh
Q 041202 52 FLALAGVALTGTIIGLCVT------TPLFIIFSPVIVPAAIVLALAVTGFLTS 98 (166)
Q Consensus 52 LL~LaGlTL~gtvigL~va------tPL~iifSPVLVPaai~~~l~~~gfl~s 98 (166)
++.-.|++..||+.+-..+ .=+-++.-|+.+|..|...-+....+.+
T Consensus 132 ~lgt~gl~~igtl~aal~~~~r~~~~Ll~lL~lPl~iPvli~~~~~t~~~~~g 184 (215)
T PF03379_consen 132 LLGTLGLAAIGTLLAALAAGARGREILLPLLLLPLLIPVLIFAVQATTAALTG 184 (215)
T ss_pred HHHhHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444566777777654443 1233456799999888776666655443
No 74
>COG4425 Predicted membrane protein [Function unknown]
Probab=39.45 E-value=75 Score=31.01 Aligned_cols=61 Identities=21% Similarity=0.358 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhhhchhhhchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhCCC
Q 041202 56 AGVALTGTIIGLCVTTPLFIIFSPVIVPAAIVLALAVTGFLTSGAFGLTALSSLSWVLSILRQKTG 121 (166)
Q Consensus 56 aGlTL~gtvigL~vatPL~iifSPVLVPaai~~~l~~~gfl~sg~~g~~~ls~lsW~~~y~rg~~p 121 (166)
-+++-+|+++|.++.- .-.+|-|.|=.-.+--+..||.- ++|-++--.+-|+.+|++-..|
T Consensus 47 ~~~s~tG~~~g~vff~---~sLTPSLLPr~~l~qgv~sgf~~--A~Gy~~gv~~~wl~~y~elp~~ 107 (588)
T COG4425 47 RSLSATGLLMGTVFFW---ASLTPSLLPRPWLFQGVLSGFSL--AAGYGAGVFLHWLWRYLELPES 107 (588)
T ss_pred HhhccchHHHHHHHHH---HhcCccccCchHHHHHHHHHHHH--HhhhHHHHHHHHHHHHhhCCCC
Confidence 3444455555544321 22467788877777777777754 4444455678999999988665
No 75
>PF12420 DUF3671: Protein of unknown function ; InterPro: IPR022139 This domain family is found in eukaryotes, and is typically between 96 and 116 amino acids in length.
Probab=38.11 E-value=1e+02 Score=23.31 Aligned_cols=20 Identities=5% Similarity=-0.046 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHHHHHHHHh
Q 041202 98 SGAFGLTALSSLSWVLSILR 117 (166)
Q Consensus 98 sg~~g~~~ls~lsW~~~y~r 117 (166)
.-.+...++..++++|-+.+
T Consensus 80 ~f~~i~~~i~ll~iiYi~~K 99 (104)
T PF12420_consen 80 IFFIIFITIILLVIIYIFIK 99 (104)
T ss_pred hhhHHHHHHHHHHHHHHHHh
Confidence 33445566677777776653
No 76
>PRK10263 DNA translocase FtsK; Provisional
Probab=37.35 E-value=2.1e+02 Score=30.99 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhhchhhhchhh
Q 041202 61 TGTIIGLCVTTPLFIIFSPVI 81 (166)
Q Consensus 61 ~gtvigL~vatPL~iifSPVL 81 (166)
.|=+||..++.+|.-+|+-+-
T Consensus 142 gGGIIG~lLs~lL~~LfG~vG 162 (1355)
T PRK10263 142 SGGVIGSLLSTTLQPLLHSSG 162 (1355)
T ss_pred ccchHHHHHHHHHHHHHhHHH
Confidence 477888888888777777643
No 77
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=37.20 E-value=1.9e+02 Score=22.11 Aligned_cols=15 Identities=27% Similarity=0.240 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhh
Q 041202 104 TALSSLSWVLSILRQ 118 (166)
Q Consensus 104 ~~ls~lsW~~~y~rg 118 (166)
-.+-.+.|+.++++.
T Consensus 33 ~i~~~~~~i~~~l~~ 47 (121)
T PF06695_consen 33 FILLFLDKILKWLKR 47 (121)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344556777777765
No 78
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=36.75 E-value=31 Score=26.37 Aligned_cols=18 Identities=39% Similarity=0.492 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhhhchhh
Q 041202 59 ALTGTIIGLCVTTPLFII 76 (166)
Q Consensus 59 TL~gtvigL~vatPL~ii 76 (166)
.|..|+.||+++.|.+++
T Consensus 102 Al~tT~~GL~vai~~~~~ 119 (139)
T PF01618_consen 102 ALITTAYGLVVAIPALPF 119 (139)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456667777777666643
No 79
>COG1289 Predicted membrane protein [Function unknown]
Probab=36.31 E-value=3.1e+02 Score=26.32 Aligned_cols=25 Identities=32% Similarity=0.321 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041202 38 KVLAVLAMLPLGGTFLALAGVALTG 62 (166)
Q Consensus 38 qvl~~~tll~~gg~LL~LaGlTL~g 62 (166)
.+++.+.++++|..++.+..-...+
T Consensus 406 ri~GTllg~~~g~~~l~~~~p~~~~ 430 (674)
T COG1289 406 RILGTLLGLLLGLLVLLLLLPLIPG 430 (674)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchh
Confidence 3666666667766666665544444
No 80
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=36.23 E-value=1.6e+02 Score=25.55 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=19.2
Q ss_pred HHHHHHHHhhhchhhhchhhHHHHHHHHH
Q 041202 62 GTIIGLCVTTPLFIIFSPVIVPAAIVLAL 90 (166)
Q Consensus 62 gtvigL~vatPL~iifSPVLVPaai~~~l 90 (166)
.++..++...|+++.-+|.+-|.+++...
T Consensus 234 TslTTl~~~l~L~~~g~~~i~~fa~~l~~ 262 (289)
T PRK13022 234 TSLTTLLVVLALYLFGGGTLHDFALALLI 262 (289)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 34444556667777777888887766554
No 81
>PF14017 DUF4233: Protein of unknown function (DUF4233)
Probab=35.78 E-value=92 Score=23.82 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=29.7
Q ss_pred hchhhHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhCC
Q 041202 77 FSPVIVPAAIV--LALAVTGFLTSGAFGLTALSSLSWVLSILRQKT 120 (166)
Q Consensus 77 fSPVLVPaai~--~~l~~~gfl~sg~~g~~~ls~lsW~~~y~rg~~ 120 (166)
-.|-=+++..+ +.++.+||+.-.-+.+..+....|.|-..-|++
T Consensus 54 ~rpwa~~~g~~lQv~~i~~g~v~p~m~vvG~iF~~~W~~~l~lg~~ 99 (107)
T PF14017_consen 54 RRPWAYWLGWVLQVLLIAGGFVHPAMFVVGVIFAAVWWYALYLGRR 99 (107)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34544554443 345667777777777888888999998776643
No 82
>COG2148 WcaJ Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]
Probab=35.54 E-value=28 Score=30.15 Aligned_cols=17 Identities=29% Similarity=0.694 Sum_probs=11.9
Q ss_pred hhhhchhhHHHHHHHHH
Q 041202 74 FIIFSPVIVPAAIVLAL 90 (166)
Q Consensus 74 ~iifSPVLVPaai~~~l 90 (166)
+++|||++.+.++++-+
T Consensus 53 L~v~sP~~l~iai~ikl 69 (226)
T COG2148 53 LLLLSPVMLIIALAIKL 69 (226)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 35688888887776654
No 83
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=35.53 E-value=1.7e+02 Score=21.06 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=11.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041202 91 AVTGFLTSGAFGLTALSSLSWVLSIL 116 (166)
Q Consensus 91 ~~~gfl~sg~~g~~~ls~lsW~~~y~ 116 (166)
++..++..|++|+..+..+.=-++.+
T Consensus 15 ~~~l~~~~~~~~~~~l~~~~~~~~~i 40 (181)
T PF12729_consen 15 IILLLLIVGIVGLYSLSQINQNVEEI 40 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555554444444433
No 84
>PRK15049 L-asparagine permease; Provisional
Probab=35.44 E-value=1.3e+02 Score=27.51 Aligned_cols=32 Identities=16% Similarity=0.080 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041202 30 AGGGPSASKVLAVLAMLPLGGTFLALAGVALT 61 (166)
Q Consensus 30 ~~~~Psssqvl~~~tll~~gg~LL~LaGlTL~ 61 (166)
-++.-+..++..+...-.+|.-++.+.|..+.
T Consensus 26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~ 57 (499)
T PRK15049 26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQ 57 (499)
T ss_pred hhccCCHhHhHHHhhhccccchHHHhhHHHHH
Confidence 34556777887777777777777777776653
No 85
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=35.41 E-value=1e+02 Score=27.70 Aligned_cols=44 Identities=32% Similarity=0.442 Sum_probs=23.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHH---HhhhhHHHhhhhhHh
Q 041202 96 LTSGAFGLTALSSLSWVLSILRQKTGSVPEMADQAKKR---VAGMADYVGQKTKEV 148 (166)
Q Consensus 96 l~sg~~g~~~ls~lsW~~~y~rg~~p~g~dqld~Ak~R---i~d~A~~vg~kake~ 148 (166)
|-+|-.|+..++.-.|.|=| +..++||.. .+|.-..+.+|.+++
T Consensus 21 LvGGp~Gl~ml~AgA~Y~~y---------Q~~EQAr~~A~~fA~~ld~~~~kl~~M 67 (301)
T PF06120_consen 21 LVGGPPGLVMLGAGAWYYFY---------QNAEQARQEAIEFADSLDELKEKLKEM 67 (301)
T ss_pred hhcchHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 34555666666667776555 334555542 244444455555443
No 86
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=35.33 E-value=1.4e+02 Score=28.36 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhhchhhhchhhHHHHHHHHHHHH
Q 041202 60 LTGTIIGLCVTTPLFIIFSPVIVPAAIVLALAVT 93 (166)
Q Consensus 60 L~gtvigL~vatPL~iifSPVLVPaai~~~l~~~ 93 (166)
+..++..++.+.|||++-+..+-|.++++.+.+.
T Consensus 435 l~s~lTTlia~l~L~~~g~g~i~~fAitl~iGii 468 (498)
T PRK05812 435 LDSNITTLIAAIILYALGTGPVKGFAVTLGIGIL 468 (498)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 4445555677788888777878888777665433
No 87
>TIGR01998 PTS-II-BC-nag PTS system, N-acetylglucosamine-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes.
Probab=33.96 E-value=1.2e+02 Score=28.57 Aligned_cols=45 Identities=16% Similarity=0.001 Sum_probs=29.5
Q ss_pred HHHHHHHhhhchhhhchhhHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 041202 63 TIIGLCVTTPLFIIFSPVIVPAAIVLALAVTGFLTSGAFGLTALS 107 (166)
Q Consensus 63 tvigL~vatPL~iifSPVLVPaai~~~l~~~gfl~sg~~g~~~ls 107 (166)
-++.+.++.|+-+++.|||-+..-.+.-....+-.+|.+|.....
T Consensus 151 Piit~li~~~l~~~~~~iwp~i~~~I~~~~~~i~~~g~~g~~iyG 195 (476)
T TIGR01998 151 PIMAGFVGLVLAALLGYVWPTLYGGIVAFGESISGLGALGAGIYG 195 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 345567788888888999987777776555444445666554333
No 88
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=33.95 E-value=36 Score=28.39 Aligned_cols=17 Identities=47% Similarity=0.682 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhhhchh
Q 041202 59 ALTGTIIGLCVTTPLFI 75 (166)
Q Consensus 59 TL~gtvigL~vatPL~i 75 (166)
.|..|++||++|.|-++
T Consensus 166 AL~aTA~GL~vAIPAvi 182 (216)
T COG0811 166 ALIATAIGLFVAIPAVV 182 (216)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46677777777777555
No 89
>PF05745 CRPA: Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA); InterPro: IPR008436 Chlamydia is a genus of bacteria, which causes the most common bacterial sexually transmitted diseases. They are obligate intracellular bacterial pathogens. Members of this genus lack a peptidoglycan layer, but as a substitute, it has been proposed that they have several cysteine rich membrane proteins. This includes the major outer membrane protein (MOMP). These form disulphide bonds to provide rigidity to the cell wall. The alignment of the amino acid sequences of the MOMP from various serovars of Chlamydia show that they have between seven and ten cysteine residues; seven of which are highly conserved []. The MOMP has been the focus of efforts to produce a vaccine for Chlamydia trachomatis []. The 15 kDa cysteine-rich protein in this entry is a multi-pass outer membrane protein. They are associated with the differentiation of reticulate bodies (RBs) into elementary bodies (EBs) []. They immunolocalise to the inclusion membrane, which is the membrane that surrounds the intracellular parasite. These proteins are recognised by CD8+ T cells in both human and mouse infections, suggesting they gain access to the host cytoplasm.; GO: 0019867 outer membrane
Probab=33.86 E-value=1e+02 Score=25.29 Aligned_cols=39 Identities=33% Similarity=0.431 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhchhhHHHHHHHH
Q 041202 46 LPLGGTFLALAGVALTGTIIGLCVTTPLFIIFSPVIVPAAIVLA 89 (166)
Q Consensus 46 l~~gg~LL~LaGlTL~gtvigL~vatPL~iifSPVLVPaai~~~ 89 (166)
+.+-|++|+.+|++|+=++=+-.-..+.++ ++||+|-..
T Consensus 68 l~VlGiiLviagl~l~fil~~~lg~naf~~-----~IPAviGlv 106 (150)
T PF05745_consen 68 LVVLGIILVIAGLALTFILHSQLGNNAFLF-----IIPAVIGLV 106 (150)
T ss_pred HHHHHHHHHHHHHHHHhhehhhhcCccchh-----hHHHHHHHH
Confidence 455677888999998877666666666544 678876544
No 90
>TIGR01097 PhnE phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context).
Probab=33.39 E-value=2.7e+02 Score=22.78 Aligned_cols=27 Identities=4% Similarity=0.171 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhh-CCCCCchhHHHHHH
Q 041202 106 LSSLSWVLSILRQ-KTGSVPEMADQAKK 132 (166)
Q Consensus 106 ls~lsW~~~y~rg-~~p~g~dqld~Ak~ 132 (166)
+..+.++++.++. -.....+..|.||.
T Consensus 135 i~~~~~~~~~~~~~l~~i~~~~~eaa~~ 162 (250)
T TIGR01097 135 FHTVGFLGKLFAEAIEEVDPGPVEALRA 162 (250)
T ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 3345556665554 23344555555553
No 91
>TIGR02790 nickel_nikC nickel ABC transporter, permease subunit NikC. This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases.
Probab=33.13 E-value=2.9e+02 Score=23.06 Aligned_cols=85 Identities=21% Similarity=0.211 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh--c------hhhhchhhHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHH--HHH
Q 041202 46 LPLGGTFLALAGVALTGTIIGLCVTTP--L------FIIFSPVIVPAAIVLALAVTGFLTSGA-FGLTALSSLSW--VLS 114 (166)
Q Consensus 46 l~~gg~LL~LaGlTL~gtvigL~vatP--L------~iifSPVLVPaai~~~l~~~gfl~sg~-~g~~~ls~lsW--~~~ 114 (166)
.++...++...--++.|+.+|+..+.. . .++-...-+|..+...+... ++..|- ..+.+++..+| .+|
T Consensus 63 ~TL~ia~~~~~i~~~ig~~lG~~ag~~~~~~~~~~~~~~~~~~~iP~l~l~l~l~~-~~g~g~~~~il~l~l~~~~~~~r 141 (258)
T TIGR02790 63 VSLGSALLVLGLVLTIGLLIGGLAGYIGGRVDEAIMRVCDVFLSFPTIILSLAIVG-ILGPGLENVIIAIVLVHWAWYAR 141 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHH
Confidence 333334444444445555555555432 0 11222334555544444333 222221 12344555555 567
Q ss_pred HHhhCCC--CCchhHHHHH
Q 041202 115 ILRQKTG--SVPEMADQAK 131 (166)
Q Consensus 115 y~rg~~p--~g~dqld~Ak 131 (166)
.+|+.-- ...|.+|.||
T Consensus 142 ~~r~~~~~~~~~~~veaA~ 160 (258)
T TIGR02790 142 MVRGMVVSLKQREFVLAAR 160 (258)
T ss_pred HHHHHHHHHhhhHHHHHHH
Confidence 7776311 1244455554
No 92
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=32.99 E-value=3e+02 Score=23.24 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=17.9
Q ss_pred hhhchhhHHHHHHHHHHHHHHHhh
Q 041202 75 IIFSPVIVPAAIVLALAVTGFLTS 98 (166)
Q Consensus 75 iifSPVLVPaai~~~l~~~gfl~s 98 (166)
++.-|+.||..|...-++...+.+
T Consensus 158 lL~lPl~vPvLIfg~~a~~~~~~G 181 (211)
T TIGR01190 158 LLVLPLYIPVLIFGSAAIQAAAEG 181 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 566799999888877777766554
No 93
>PF15420 Abhydrolase_9_N: Alpha/beta-hydrolase family N-terminus
Probab=32.91 E-value=66 Score=27.06 Aligned_cols=44 Identities=23% Similarity=0.434 Sum_probs=32.2
Q ss_pred hchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhCCCC
Q 041202 77 FSPVIVPAAIVLALAVTGFLTSGAFGLTALSSLSWVLSILRQKTGS 122 (166)
Q Consensus 77 fSPVLVPaai~~~l~~~gfl~sg~~g~~~ls~lsW~~~y~rg~~p~ 122 (166)
++|=|+|=.-..-=+++|+..+.+-|++. .+.|+.||+.-.+|.
T Consensus 1 LTPSLlPR~w~~Qgv~~Gi~~a~GY~~Gv--~~~~l~r~~~~~~~~ 44 (208)
T PF15420_consen 1 LTPSLLPRPWLFQGVVSGISAAIGYGLGV--FLRWLWRRLGLPRPS 44 (208)
T ss_pred CCCccCCCcHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcCCCCC
Confidence 46777776666666777777777777665 689999999775553
No 94
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=31.62 E-value=79 Score=19.94 Aligned_cols=19 Identities=11% Similarity=0.107 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHhhCC
Q 041202 102 GLTALSSLSWVLSILRQKT 120 (166)
Q Consensus 102 g~~~ls~lsW~~~y~rg~~ 120 (166)
-+..+..+.=+|+|+..-+
T Consensus 14 i~~~l~~~p~i~~~i~~~~ 32 (53)
T PF01484_consen 14 ILSCLITVPSIYNDIQNFQ 32 (53)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455556677665543
No 95
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=31.38 E-value=1.9e+02 Score=20.44 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=11.7
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 041202 33 GPSASKVLAVLAMLPLGGT 51 (166)
Q Consensus 33 ~Psssqvl~~~tll~~gg~ 51 (166)
+=+.+|++.++..+.++..
T Consensus 16 GlT~RQl~~l~~~~~~~~~ 34 (93)
T PF12666_consen 16 GLTLRQLICLAIGALVGVG 34 (93)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 4478888776665544433
No 96
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.72 E-value=2.5e+02 Score=21.66 Aligned_cols=15 Identities=20% Similarity=0.003 Sum_probs=10.7
Q ss_pred chhHHHHHHHHhhhh
Q 041202 124 PEMADQAKKRVAGMA 138 (166)
Q Consensus 124 ~dqld~Ak~Ri~d~A 138 (166)
++..+++-+|+.|+.
T Consensus 114 ~~~~~~~~~r~l~t~ 128 (141)
T PF06081_consen 114 SDSFSYALNRVLLTL 128 (141)
T ss_pred CccHHHHHHHHHHHH
Confidence 445677889988754
No 97
>PRK15135 histidine/lysine/arginine/ornithine ABC transporter permease HisQ; Provisional
Probab=30.37 E-value=2.9e+02 Score=22.21 Aligned_cols=31 Identities=13% Similarity=0.090 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHH--HHHhh-CCCCCchhHHHHHH
Q 041202 102 GLTALSSLSWVL--SILRQ-KTGSVPEMADQAKK 132 (166)
Q Consensus 102 g~~~ls~lsW~~--~y~rg-~~p~g~dqld~Ak~ 132 (166)
++-+++..+|.| +.+|+ ......+++|.||.
T Consensus 96 ~ilal~l~~~~~~~~~~r~~l~~v~~~~ieaA~~ 129 (228)
T PRK15135 96 GIITLGFIYGAYFTETFRGAFMAVPKGHIEAATA 129 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHhHHHHHHH
Confidence 444555555554 67888 35556888888885
No 98
>PF02397 Bac_transf: Bacterial sugar transferase; InterPro: IPR003362 This entry represents a conserved region from a number of different bacterial sugar transferases, involved in diverse biosynthesis pathways. Examples include galactosyl-P-P-undecaprenol synthetase (2.7.8.6 from EC), which transfers galatose-1-phosphate to the lipid precursor undecaprenol phosphate in the first steps of O-polysaccharide biosynthesis; UDP-galactose-lipid carrier transferase, which is involved in the biosynthesis of amylovoran; and galactosyl transferase CpsD, which is essential for assembly of the group B Streptococci (GBS) type III capsular polysaccharide.
Probab=30.37 E-value=51 Score=27.32 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=16.6
Q ss_pred HHHhhhchhhhchhhHHHHHHHHH
Q 041202 67 LCVTTPLFIIFSPVIVPAAIVLAL 90 (166)
Q Consensus 67 L~vatPL~iifSPVLVPaai~~~l 90 (166)
++++..+++++||+++..++++.+
T Consensus 6 i~~a~~~li~~~Pl~l~iai~i~l 29 (187)
T PF02397_consen 6 IVLALLLLILLSPLFLIIAILIKL 29 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677788888777666655
No 99
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=30.02 E-value=51 Score=31.46 Aligned_cols=14 Identities=29% Similarity=0.627 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHhh
Q 041202 58 VALTGTIIGLCVTT 71 (166)
Q Consensus 58 lTL~gtvigL~vat 71 (166)
|++.|-++|+++..
T Consensus 579 l~~~GGiiGi~lg~ 592 (648)
T PRK10535 579 VCLVGGALGITLSL 592 (648)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555443
No 100
>PLN03211 ABC transporter G-25; Provisional
Probab=29.98 E-value=2.3e+02 Score=27.42 Aligned_cols=56 Identities=21% Similarity=0.367 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHhhh-chhhhchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041202 53 LALAGVALTGTIIGLCVTTP-LFIIFSPVIVPAAIVLALAVTGFLTSGAFGLTALSSLSWVL 113 (166)
Q Consensus 53 L~LaGlTL~gtvigL~vatP-L~iifSPVLVPaai~~~l~~~gfl~sg~~g~~~ls~lsW~~ 113 (166)
+++.-.++++..+|+.+++= .=+-..-.++|..+..+++.+||+.. .-=..+.|++
T Consensus 523 li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~-----~ip~~~~W~~ 579 (659)
T PLN03211 523 LVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH-----KLPSCMAWIK 579 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh-----hchHHHHHHH
Confidence 34444556666666665432 01113334555555556666666543 1124466663
No 101
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=29.71 E-value=34 Score=26.75 Aligned_cols=28 Identities=25% Similarity=0.492 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhhhchhhhchhhHH
Q 041202 56 AGVALTGTIIGLCVTTPLFIIFSPVIVP 83 (166)
Q Consensus 56 aGlTL~gtvigL~vatPL~iifSPVLVP 83 (166)
-|.||.-.+|-|.+.+-|+++|.|=+.-
T Consensus 12 kgFTLvEMLiVLlIISiLlLl~iPNltK 39 (107)
T COG4537 12 KGFTLVEMLIVLLIISILLLLFIPNLTK 39 (107)
T ss_pred ccccHHHHHHHHHHHHHHHHHHccchhh
Confidence 4788999999999999999999998765
No 102
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=29.58 E-value=1.8e+02 Score=28.74 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhhhchhhhchhhHHHHHHHHHHHHHHHhhhhH
Q 041202 57 GVALTGTIIGLCVTTPLFIIFSPVIVPAAIVLALAVTGFLTSGAF 101 (166)
Q Consensus 57 GlTL~gtvigL~vatPL~iifSPVLVPaai~~~l~~~gfl~sg~~ 101 (166)
.-++.+++.-++++.|||++=+..+=|.++++.+.+..-+.++-+
T Consensus 540 ~~IldanlTTlia~lpL~~~Ggg~ikgFAvTL~iGIl~S~ftAi~ 584 (604)
T PRK12933 540 STIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIF 584 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHH
Confidence 345677788889999999988887888777776665544443333
No 103
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=29.07 E-value=2.4e+02 Score=28.38 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhhchhhhchhhHHHHHHHHHHHH
Q 041202 60 LTGTIIGLCVTTPLFIIFSPVIVPAAIVLALAVT 93 (166)
Q Consensus 60 L~gtvigL~vatPL~iifSPVLVPaai~~~l~~~ 93 (166)
+.+++..++.+.|||++-++.+-|.++++.+.+.
T Consensus 380 l~s~lTTlia~lpL~~~g~g~ik~FAitliiGi~ 413 (758)
T PRK13023 380 VDANLTTLIAALVLFLLGSGTVHGFALTVAIGIG 413 (758)
T ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 3444555567778888877888887776655443
No 104
>PTZ00370 STEVOR; Provisional
Probab=28.53 E-value=1.8e+02 Score=26.36 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041202 46 LPLGGTFLALAGVALTGTI 64 (166)
Q Consensus 46 l~~gg~LL~LaGlTL~gtv 64 (166)
-.+|.++|.+.|+..+-++
T Consensus 179 CsVGSafLT~IGLaAAKaA 197 (296)
T PTZ00370 179 CSLGSALLTLIGLAAAKAA 197 (296)
T ss_pred eccHHHHHHHHHHHHHHHH
Confidence 3456666666666666543
No 105
>TIGR03003 ectoine_ehuD ectoine/hydroxyectoine ABC transporter, permease protein EhuD. Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.
Probab=28.27 E-value=3e+02 Score=21.76 Aligned_cols=31 Identities=13% Similarity=0.046 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHH--HHHhh-CCCCCchhHHHHHH
Q 041202 102 GLTALSSLSWVL--SILRQ-KTGSVPEMADQAKK 132 (166)
Q Consensus 102 g~~~ls~lsW~~--~y~rg-~~p~g~dqld~Ak~ 132 (166)
++-+++...|.| +.+|+ -....+++.|.||.
T Consensus 89 ~iial~l~~~~~~~~~~r~~l~~v~~~~~eaA~a 122 (212)
T TIGR03003 89 GVLGLGLHYATYAAEVYRAGIEAVPRGQWEAATA 122 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHH
Confidence 344445444444 44455 23455778888875
No 106
>cd03395 PAP2_like_4 PAP2_like_4 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=28.00 E-value=2.9e+02 Score=21.53 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=11.7
Q ss_pred HhhhhHHHHHHHHHHHHHHH
Q 041202 96 LTSGAFGLTALSSLSWVLSI 115 (166)
Q Consensus 96 l~sg~~g~~~ls~lsW~~~y 115 (166)
+++..+|+.......++||+
T Consensus 157 l~G~~lG~~~~~~~~~~~~~ 176 (177)
T cd03395 157 IAGALIGIISGLLFYLLFSW 176 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44445555555566677765
No 107
>PRK10132 hypothetical protein; Provisional
Probab=28.00 E-value=74 Score=24.39 Aligned_cols=27 Identities=7% Similarity=0.137 Sum_probs=15.0
Q ss_pred chhHHHHHHHHhhhhHHHhhhhhHhhH
Q 041202 124 PEMADQAKKRVAGMADYVGQKTKEVGQ 150 (166)
Q Consensus 124 ~dqld~Ak~Ri~d~A~~vg~kake~Gq 150 (166)
.++.+.+|.|+.+.-....++..+...
T Consensus 40 ~~~~~~lR~r~~~~L~~ar~~l~~~~~ 66 (108)
T PRK10132 40 KGEAEAARRKAQALLKETRARMHGRTR 66 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 344666666666655555555554433
No 108
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=27.57 E-value=51 Score=26.92 Aligned_cols=56 Identities=11% Similarity=0.118 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhCCCCCc------------hhHHHHH-----HHHhhhhHHHhhhhhHhhHHHhhHhhhhcCC
Q 041202 106 LSSLSWVLSILRQKTGSVP------------EMADQAK-----KRVAGMADYVGQKTKEVGQDIQSKVHEAGGK 162 (166)
Q Consensus 106 ls~lsW~~~y~rg~~p~g~------------dqld~Ak-----~Ri~d~A~~vg~kake~Gq~iq~ka~da~~~ 162 (166)
.....|-|++ |.++|+.. |.+|+-- +|=.|.-+.=-|+-+++++.+|....|.+..
T Consensus 9 ~~~~~w~yr~-rpr~p~~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At~ 81 (156)
T PF08372_consen 9 FLIGLWNYRF-RPRHPPHMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVATQ 81 (156)
T ss_pred HHHHHhcccc-CCCCCCCCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556798886 66666432 3333211 1112222223367788888888888776643
No 109
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=27.50 E-value=2e+02 Score=21.14 Aligned_cols=14 Identities=14% Similarity=0.133 Sum_probs=7.8
Q ss_pred HHHHHHHHhhCCCC
Q 041202 109 LSWVLSILRQKTGS 122 (166)
Q Consensus 109 lsW~~~y~rg~~p~ 122 (166)
+.+.+++++..+|.
T Consensus 52 ~~~~lrr~K~g~~~ 65 (95)
T TIGR02762 52 IWKRLRRIKGGEGE 65 (95)
T ss_pred HHHHHHHHHcCCCh
Confidence 33446677666553
No 110
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=27.30 E-value=4.2e+02 Score=23.24 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=10.5
Q ss_pred HHHHHHHhhCCCCCchhHHH
Q 041202 110 SWVLSILRQKTGSVPEMADQ 129 (166)
Q Consensus 110 sW~~~y~rg~~p~g~dqld~ 129 (166)
.+.++.++.+.+-|.+..++
T Consensus 446 ~~~~~~~~~~T~~G~~~~~~ 465 (511)
T PF09972_consen 446 IIFYKVMPRRTPEGAELYAQ 465 (511)
T ss_pred HHHhhhccccchhHHHHHHH
Confidence 33555555566666554433
No 111
>COG1289 Predicted membrane protein [Function unknown]
Probab=27.03 E-value=2.9e+02 Score=26.59 Aligned_cols=23 Identities=26% Similarity=0.628 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhhchhhhchhhH
Q 041202 60 LTGTIIGLCVTTPLFIIFSPVIV 82 (166)
Q Consensus 60 L~gtvigL~vatPL~iifSPVLV 82 (166)
+.||++|+.++..++.+.-|.+.
T Consensus 407 i~GTllg~~~g~~~l~~~~p~~~ 429 (674)
T COG1289 407 ILGTLLGLLLGLLVLLLLLPLIP 429 (674)
T ss_pred HHHHHHHHHHHHHHHHHhcccch
Confidence 45777777777766665555444
No 112
>PF12277 DUF3618: Protein of unknown function (DUF3618); InterPro: IPR022062 This domain family is found in bacteria, and is approximately 50 amino acids in length.
Probab=26.89 E-value=1.1e+02 Score=19.99 Aligned_cols=21 Identities=10% Similarity=0.196 Sum_probs=17.1
Q ss_pred hHHHHHHHHhhhhHHHhhhhh
Q 041202 126 MADQAKKRVAGMADYVGQKTK 146 (166)
Q Consensus 126 qld~Ak~Ri~d~A~~vg~kak 146 (166)
+++..|.+|+++...+.+|..
T Consensus 11 dIe~tR~~La~tvd~L~~r~~ 31 (49)
T PF12277_consen 11 DIERTRAELAETVDELAARLS 31 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHCC
Confidence 577888899988888887775
No 113
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=26.36 E-value=4.2e+02 Score=22.79 Aligned_cols=11 Identities=9% Similarity=0.039 Sum_probs=6.1
Q ss_pred CCCchhHHHHH
Q 041202 121 GSVPEMADQAK 131 (166)
Q Consensus 121 p~g~dqld~Ak 131 (166)
|...||+|.-|
T Consensus 101 ~~~~d~~~~~~ 111 (197)
T PRK12585 101 IRIRDQLRSVK 111 (197)
T ss_pred hhhHHHHHHHH
Confidence 45566666444
No 114
>PRK08124 flagellar motor protein MotA; Validated
Probab=26.34 E-value=2.2e+02 Score=24.61 Aligned_cols=49 Identities=18% Similarity=0.044 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhhchhhhchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhC
Q 041202 60 LTGTIIGLCVTTPLFIIFSPVIVPAAIVLALAVTGFLTSGAFGLTALSSLSWVLSILRQK 119 (166)
Q Consensus 60 L~gtvigL~vatPL~iifSPVLVPaai~~~l~~~gfl~sg~~g~~~ls~lsW~~~y~rg~ 119 (166)
+.|||+|++-+.--+ -.|-.+=.+|..+|..+ .-++.+ --++|+|+.++
T Consensus 159 llGTVlGlI~~f~~l--~~p~~lg~gIa~ALitT----~yGl~v-----A~~~~~Pia~k 207 (263)
T PRK08124 159 VLGAVIGLIAALGNL--SDIEKLGHAISAAFVAT----LLGIFT-----GYVLWHPFANK 207 (263)
T ss_pred HHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHH
Confidence 568899988765543 34433333344444333 222222 25667776554
No 115
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=26.30 E-value=95 Score=31.70 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=31.4
Q ss_pred HHHHHHHhhhchhhh---chhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041202 63 TIIGLCVTTPLFIIF---SPVIVPAAIVLALAVTGFLTSGAFGLTALSSLSWVL 113 (166)
Q Consensus 63 tvigL~vatPL~iif---SPVLVPaai~~~l~~~gfl~sg~~g~~~ls~lsW~~ 113 (166)
|+...+...|+++.. ++++-|.++++ +.|+++|-.+.+..+-++.|+.
T Consensus 979 tlTti~gllPl~l~~G~g~~~~~plai~i---i~GL~~St~ltL~~vP~ly~~~ 1029 (1049)
T PRK15127 979 SLAFILGVMPLVISSGAGSGAQNAVGTGV---MGGMVTATVLAIFFVPVFFVVV 1029 (1049)
T ss_pred HHHHHHHHHHHHhcCCCCHHHhcCchhhh---hHHHHHHHHHHHHHHHHHHHHH
Confidence 333445556888754 46788876654 4567777777777777776665
No 116
>PF12153 CAP18_C: LPS binding domain of CAP18 (C terminal); InterPro: IPR022746 This entry represents the cathlecidin antimicrobial C-terminal peptides. The C terminus is cleaved from the cathlecidin precursor, and is approximately 30 amino acids in length with a helical structure. This entry is found in association with PF00666 from PFAM. The C terminus peptides possess antimicrobial activity by virtue of their binding to bacterial lipopolysaccharides [][].; GO: 0042742 defense response to bacterium; PDB: 1LYP_A 2LMF_A 2FBU_H 2FBS_N 2K6O_A 2FCG_F.
Probab=26.29 E-value=1.2e+02 Score=18.56 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=12.8
Q ss_pred HHHHHHHHhhhhHHHhhhhhHh
Q 041202 127 ADQAKKRVAGMADYVGQKTKEV 148 (166)
Q Consensus 127 ld~Ak~Ri~d~A~~vg~kake~ 148 (166)
+..++.+|.+....+|||-||+
T Consensus 4 lrk~~eKigeklkkIGQkIKDf 25 (28)
T PF12153_consen 4 LRKGGEKIGEKLKKIGQKIKDF 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667766555555555543
No 117
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=26.27 E-value=3.1e+02 Score=21.29 Aligned_cols=10 Identities=20% Similarity=0.248 Sum_probs=5.0
Q ss_pred HHHHHHHhhC
Q 041202 110 SWVLSILRQK 119 (166)
Q Consensus 110 sW~~~y~rg~ 119 (166)
.|+-++=||+
T Consensus 68 ~~l~rlKRGr 77 (111)
T TIGR03750 68 KLLARLKRGK 77 (111)
T ss_pred HHHHHHHcCC
Confidence 4555544554
No 118
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=26.20 E-value=4.2e+02 Score=22.80 Aligned_cols=13 Identities=15% Similarity=0.258 Sum_probs=6.4
Q ss_pred chhHHHHHHHHhh
Q 041202 124 PEMADQAKKRVAG 136 (166)
Q Consensus 124 ~dqld~Ak~Ri~d 136 (166)
++|++.||+--.+
T Consensus 125 ~~~~~~~~~~~~~ 137 (197)
T PRK12585 125 QEQIEKARQEREE 137 (197)
T ss_pred HHHHHHHHHhHHH
Confidence 4555555554433
No 119
>PRK14402 membrane protein; Provisional
Probab=25.74 E-value=2.4e+02 Score=23.73 Aligned_cols=35 Identities=17% Similarity=0.438 Sum_probs=22.4
Q ss_pred HHHhhhchhhhchhhHHHHHHHHHHH---HHHHhhhhH
Q 041202 67 LCVTTPLFIIFSPVIVPAAIVLALAV---TGFLTSGAF 101 (166)
Q Consensus 67 L~vatPL~iifSPVLVPaai~~~l~~---~gfl~sg~~ 101 (166)
.+.+.-.++.++|.+....+++++++ +...+-|.+
T Consensus 107 vAt~~G~~l~l~p~~~l~~~~v~~i~~~itr~vSl~Si 144 (198)
T PRK14402 107 VATSFGTLLFLDPVLALLTFPVGVACMWLTRFVSAGSM 144 (198)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556667888888887777665 445555543
No 120
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.74 E-value=3.1e+02 Score=22.48 Aligned_cols=30 Identities=30% Similarity=0.409 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Q 041202 46 LPLGGTFLALAGVALTGTIIGLCVTTPLFI 75 (166)
Q Consensus 46 l~~gg~LL~LaGlTL~gtvigL~vatPL~i 75 (166)
-.+-..+|.|+|..|++|.++++.-.-.|+
T Consensus 72 ~~ivs~vLil~g~~la~t~~~~i~~ig~~l 101 (143)
T COG3296 72 YSIVSFVLILAGVFLAATDISFIIIIGFFL 101 (143)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 334667889999999999888765444333
No 121
>PF06549 DUF1118: Protein of unknown function (DUF1118); InterPro: IPR009500 This family consists of several hypothetical plant proteins of unknown function.
Probab=25.66 E-value=1.9e+02 Score=22.94 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhhchhhhchhhHHHHHHHHHHHHHHHhhhh
Q 041202 60 LTGTIIGLCVTTPLFIIFSPVIVPAAIVLALAVTGFLTSGA 100 (166)
Q Consensus 60 L~gtvigL~vatPL~iifSPVLVPaai~~~l~~~gfl~sg~ 100 (166)
|....+.|.++-|.++.|.|-=-+.-+++=.+++.....|+
T Consensus 59 L~slaL~ll~ag~~~v~~vPdds~~~va~Q~vvA~~~~vg~ 99 (116)
T PF06549_consen 59 LASLALPLLVAGPAAVYLVPDDSTWLVALQAVVALVCVVGG 99 (116)
T ss_pred HHHHHHHHHHhhhheEEEecCCcHHHHHHHHHHHHHHHhhH
Confidence 44455677888899999988655555555444444443333
No 122
>TIGR01183 ntrB nitrate ABC transporter, permease protein. This model describes the nitrate transport permease in bacteria. This is gene product of ntrB. The nitrate transport permease is the integral membrane component of the nitrate transport system and belongs to the ATP-binding cassette (ABC) superfamily. At least in photosynthetic bacteria nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA, ntrB, ntrC, ntrD, narB. Functionally ntrC and ntrD resemble the ATP binding components of the binding protein-dependent transport systems. Mutational studies have shown that ntrB and ntrC are mandatory for nitrate accumulation. Nitrate reductase is encoded by narB.
Probab=25.47 E-value=3.7e+02 Score=21.89 Aligned_cols=63 Identities=13% Similarity=0.109 Sum_probs=30.2
Q ss_pred HhhhchhhhchhhHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHhhCCCCCchhHHHHH
Q 041202 69 VTTPLFIIFSPVIVPAAIVLALAVTGFLTSGAFGLTALS-SLSWVLSILRQKTGSVPEMADQAK 131 (166)
Q Consensus 69 vatPL~iifSPVLVPaai~~~l~~~gfl~sg~~g~~~ls-~lsW~~~y~rg~~p~g~dqld~Ak 131 (166)
+..|++.++.++=+.+-+.+.+...|.-..+...+..+. ..-.++|-..|.+...+|..|.||
T Consensus 53 ~~~p~~~~l~~iP~~~~~pl~~~~fG~g~~~~i~~v~l~~~~pi~~~~~~g~~~v~~~l~e~a~ 116 (202)
T TIGR01183 53 ALDPIFQVLRTIPPLAWLPIALAAFQDAQPAAIFVIFITAIWPIIINTAVGVQQIPQDYNNVAR 116 (202)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 446777666655333333344443443233333333333 234455555665555555555555
No 123
>PF10332 DUF2418: Protein of unknown function (DUF2418); InterPro: IPR018819 This entry represents the conserved 100 residue central region from a family of proteins found in fungi. It carries a characteristic EYD sequence motif. The function is not known.
Probab=25.35 E-value=3e+02 Score=20.71 Aligned_cols=14 Identities=43% Similarity=0.733 Sum_probs=10.7
Q ss_pred hhhchhhhchhhHH
Q 041202 70 TTPLFIIFSPVIVP 83 (166)
Q Consensus 70 atPL~iifSPVLVP 83 (166)
.+-||..|||+-|=
T Consensus 16 ~l~LF~~FSP~hvl 29 (99)
T PF10332_consen 16 SLRLFCLFSPIHVL 29 (99)
T ss_pred HHHHHHHcChHHHH
Confidence 46689999998654
No 124
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=25.31 E-value=1.7e+02 Score=20.38 Aligned_cols=13 Identities=15% Similarity=0.442 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhh
Q 041202 106 LSSLSWVLSILRQ 118 (166)
Q Consensus 106 ls~lsW~~~y~rg 118 (166)
-..+.|+|.-+-|
T Consensus 40 YGF~VWm~Q~~~G 52 (56)
T PF06796_consen 40 YGFIVWMYQIFFG 52 (56)
T ss_pred HHHHHHHHHHHcC
Confidence 3447799998877
No 125
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=25.20 E-value=4.8e+02 Score=23.03 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 041202 55 LAGVALTGTIIGLCV 69 (166)
Q Consensus 55 LaGlTL~gtvigL~v 69 (166)
+..+.+.|.++|..+
T Consensus 7 ~~~~l~~~~~~~~~~ 21 (398)
T PRK10747 7 LFVLLIAGIVVGPMI 21 (398)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444555555554
No 126
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=24.95 E-value=2.4e+02 Score=23.49 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHhhhc
Q 041202 57 GVALTGTIIGLCVTTPL 73 (166)
Q Consensus 57 GlTL~gtvigL~vatPL 73 (166)
++++.+-++|+++.+=+
T Consensus 144 ~~~~~~L~~G~~lGs~l 160 (194)
T PF11833_consen 144 LWTLGGLVVGLILGSLL 160 (194)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555554433
No 127
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=24.88 E-value=74 Score=28.84 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhhhchhhhchh
Q 041202 44 AMLPLGGTFLALAG-VALTGTIIGLCVTTPLFIIFSPV 80 (166)
Q Consensus 44 tll~~gg~LL~LaG-lTL~gtvigL~vatPL~iifSPV 80 (166)
..+.+...-|+|+| ++....++|++++.-+.++|.++
T Consensus 172 l~~ll~~~Wlllsg~~s~~~l~~G~v~~~~v~~~~~~~ 209 (357)
T PRK12652 172 LFGASFGFYLLLGDPLYWFDLLTGAVTALIVAVLLAHV 209 (357)
T ss_pred HHHHHHHHHHHHcCcCCHHHHHHHHHHHHHHHHHhccc
Confidence 33566677788888 88888888888887777777664
No 128
>PRK14397 membrane protein; Provisional
Probab=24.82 E-value=2.3e+02 Score=24.42 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=11.2
Q ss_pred chhhhchhhHHHHHHHHHHH
Q 041202 73 LFIIFSPVIVPAAIVLALAV 92 (166)
Q Consensus 73 L~iifSPVLVPaai~~~l~~ 92 (166)
.++.++|.+....+++++++
T Consensus 112 vll~l~p~~~li~~~vf~~v 131 (222)
T PRK14397 112 VFIPLAFWQLLLSGILCLLV 131 (222)
T ss_pred HHHHHhHHHHHHHHHHHHHH
Confidence 34445676666666555544
No 129
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=24.40 E-value=1.9e+02 Score=22.90 Aligned_cols=11 Identities=36% Similarity=0.441 Sum_probs=9.0
Q ss_pred HHhhHhhhhcC
Q 041202 151 DIQSKVHEAGG 161 (166)
Q Consensus 151 ~iq~ka~da~~ 161 (166)
|+++|+.||.+
T Consensus 93 YlAsKINEAKd 103 (112)
T KOG0723|consen 93 YLASKINEAKD 103 (112)
T ss_pred HHHHHHHHHHH
Confidence 88999888764
No 130
>PRK11123 arginine transporter permease subunit ArtQ; Provisional
Probab=24.36 E-value=4.1e+02 Score=22.01 Aligned_cols=31 Identities=23% Similarity=0.153 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHH--HHHh-hCCCCCchhHHHHHH
Q 041202 102 GLTALSSLSWVL--SILR-QKTGSVPEMADQAKK 132 (166)
Q Consensus 102 g~~~ls~lsW~~--~y~r-g~~p~g~dqld~Ak~ 132 (166)
++-+++.....| +-++ +-....+++.|.||.
T Consensus 107 ~iial~~~~~~~~~~~~~~~l~~v~~~~~eaa~s 140 (238)
T PRK11123 107 GVIALSLLYAAYASQTLRGALKAVPVGQWESGQA 140 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHH
Confidence 344444444443 4444 445555777777774
No 131
>PRK02463 OxaA-like protein precursor; Provisional
Probab=24.31 E-value=1.5e+02 Score=26.48 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=33.9
Q ss_pred HHHhhhchhhhchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041202 67 LCVTTPLFIIFSPVIVPAAIVLALAVTGFLTSGAFGLTALSSLSWVLSILR 117 (166)
Q Consensus 67 L~vatPL~iifSPVLVPaai~~~l~~~gfl~sg~~g~~~ls~lsW~~~y~r 117 (166)
.....|++++|.=.-+|+++.+--++.++++ -.-.|+.||+.
T Consensus 210 m~~~~Pim~~~~~~~~PagL~lYW~~snlfs---------i~Q~~i~~~~~ 251 (307)
T PRK02463 210 MMYMMPIMMVVFSFSSPAGVGLYWLVGGFFS---------IIQQLITTYIL 251 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHh
Confidence 4567899999988999999999988888776 44678888774
No 132
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=24.30 E-value=79 Score=26.60 Aligned_cols=27 Identities=11% Similarity=0.253 Sum_probs=20.8
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041202 91 AVTGFLTSGAFGLTALSSLSWVLSILR 117 (166)
Q Consensus 91 ~~~gfl~sg~~g~~~ls~lsW~~~y~r 117 (166)
=.+.|+.+-.+-+..++++..+|||+|
T Consensus 159 D~~SFiGGIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 159 DAASFIGGIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred chhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence 345677777777778888999999986
No 133
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=24.19 E-value=87 Score=23.23 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhCCCCCchhHHHHHHHHh
Q 041202 105 ALSSLSWVLSILRQKTGSVPEMADQAKKRVA 135 (166)
Q Consensus 105 ~ls~lsW~~~y~rg~~p~g~dqld~Ak~Ri~ 135 (166)
.+.+..|.++|+.+..-...+++|.+...+.
T Consensus 10 ii~~~~~~~~~l~~~~~~i~~~l~~i~~~i~ 40 (121)
T PF14276_consen 10 IIALSIFSNNYLNNSTDSIEEQLEQIEEAIE 40 (121)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 4566788999998876566677777776664
No 134
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=24.17 E-value=1.9e+02 Score=29.36 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 041202 50 GTFLALAGVALTGTIIGLCVTTPL 73 (166)
Q Consensus 50 g~LL~LaGlTL~gtvigL~vatPL 73 (166)
--++.+.++.|+.+..|+--..|.
T Consensus 8 ~p~~~v~~lflal~~lGl~~~lp~ 31 (820)
T PF13779_consen 8 WPLLSVLALFLALSWLGLWDLLPD 31 (820)
T ss_pred HHHHHHHHHHHHHHHHhHHHhccH
Confidence 345566666777777776555544
No 135
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=24.08 E-value=2.8e+02 Score=20.03 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=8.6
Q ss_pred HHHHHHHHhhCC
Q 041202 109 LSWVLSILRQKT 120 (166)
Q Consensus 109 lsW~~~y~rg~~ 120 (166)
..|++.|.+.+.
T Consensus 19 p~wl~lHY~~k~ 30 (75)
T TIGR02976 19 PLWLILHYRSKR 30 (75)
T ss_pred HHHHHHHHHhhh
Confidence 678888777543
No 136
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein. In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria.
Probab=23.95 E-value=1.1e+02 Score=29.66 Aligned_cols=36 Identities=33% Similarity=0.465 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHH-hhhchhhhchhhHHHHHHH
Q 041202 53 LALAGVALTGTIIGLCV-TTPLFIIFSPVIVPAAIVL 88 (166)
Q Consensus 53 L~LaGlTL~gtvigL~v-atPL~iifSPVLVPaai~~ 88 (166)
++|.-+.+...++|..+ .++..+|+.|+++|+..-.
T Consensus 430 ~~Lll~~l~~lilGm~l~~~a~~ii~~pi~~P~l~~l 466 (613)
T TIGR02123 430 LLLILTMIACIILGMGLPTTANYIITATLAAPALIAL 466 (613)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHc
Confidence 33334444445555444 5688899999999987654
No 137
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=23.80 E-value=2.1e+02 Score=19.56 Aligned_cols=38 Identities=26% Similarity=0.290 Sum_probs=31.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041202 30 AGGGPSASKVLAVLAMLPLGGTFLALAGVALTGTIIGL 67 (166)
Q Consensus 30 ~~~~Psssqvl~~~tll~~gg~LL~LaGlTL~gtvigL 67 (166)
.+..++++..+.-+.--|.|-.+|.+.|+-|.+-.+--
T Consensus 27 ~~~~~~~~~~~~~l~~~p~G~~ll~~vg~gli~~gi~~ 64 (73)
T PF06724_consen 27 GSSDQGSQGALAWLLEQPFGRWLLGAVGLGLIGYGIWQ 64 (73)
T ss_pred CCCCCCHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 45667788889888889999999999999888766543
No 138
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=23.70 E-value=2e+02 Score=22.75 Aligned_cols=12 Identities=50% Similarity=0.714 Sum_probs=6.8
Q ss_pred hchhhHHHHHHH
Q 041202 77 FSPVIVPAAIVL 88 (166)
Q Consensus 77 fSPVLVPaai~~ 88 (166)
+|+.++||+++-
T Consensus 5 ~~~~i~paa~~g 16 (126)
T PF07889_consen 5 WSSLIVPAAAIG 16 (126)
T ss_pred ccchhhHHHHHH
Confidence 355666765543
No 139
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=23.48 E-value=2.1e+02 Score=18.95 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhh
Q 041202 105 ALSSLSWVLSILRQ 118 (166)
Q Consensus 105 ~ls~lsW~~~y~rg 118 (166)
+-..+.|+|.-+.|
T Consensus 26 ~YGF~vWm~Q~~~G 39 (42)
T TIGR02973 26 GYGFAVWMYQILAG 39 (42)
T ss_pred HHHHHHHHHHHhcC
Confidence 33447899998865
No 140
>PRK02391 heat shock protein HtpX; Provisional
Probab=23.44 E-value=4.7e+02 Score=22.86 Aligned_cols=40 Identities=3% Similarity=-0.214 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhCCCCCchhHHHHHHHHhhhhHHHhhhh
Q 041202 106 LSSLSWVLSILRQKTGSVPEMADQAKKRVAGMADYVGQKT 145 (166)
Q Consensus 106 ls~lsW~~~y~rg~~p~g~dqld~Ak~Ri~d~A~~vg~ka 145 (166)
.-...|+.....|.++..+++-.+-++++.+.+...+-..
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~p~L~~~v~~la~~~~~~~ 93 (296)
T PRK02391 54 YFFSDKLALWSMGARIVSEDEYPELHAMVERLCALADLPK 93 (296)
T ss_pred HHHhHHHHHHHcCCEECChhhCHHHHHHHHHHHHHcCCCC
Confidence 3444566677767777666666666777777666665443
No 141
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=23.30 E-value=2.9e+02 Score=28.31 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhhhchhhhchhhHHHHHHHHHHHH
Q 041202 57 GVALTGTIIGLCVTTPLFIIFSPVIVPAAIVLALAVT 93 (166)
Q Consensus 57 GlTL~gtvigL~vatPL~iifSPVLVPaai~~~l~~~ 93 (166)
.-++.+++.-++.+.|||++=+..+-|.++++.+.+.
T Consensus 471 ~~Il~s~lTTlia~lpL~~~g~~~ikgFAvtl~igii 507 (855)
T PRK14726 471 ATIVDANVTILIAAVILFFLGSGAVRGFAVTLAVGIL 507 (855)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 3455666777788899999888888888877766544
No 142
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=22.16 E-value=2.6e+02 Score=19.06 Aligned_cols=7 Identities=14% Similarity=0.173 Sum_probs=2.7
Q ss_pred CHHHHHH
Q 041202 35 SASKVLA 41 (166)
Q Consensus 35 sssqvl~ 41 (166)
+.+++.+
T Consensus 39 s~~~i~~ 45 (121)
T PF02687_consen 39 SKRQIRK 45 (121)
T ss_pred ChhhhhH
Confidence 3334333
No 143
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=22.12 E-value=3.7e+02 Score=20.90 Aligned_cols=7 Identities=14% Similarity=0.368 Sum_probs=3.7
Q ss_pred HHHHHHH
Q 041202 110 SWVLSIL 116 (166)
Q Consensus 110 sW~~~y~ 116 (166)
.|+|+|+
T Consensus 83 ~yl~r~l 89 (121)
T PF11990_consen 83 GYLYRRL 89 (121)
T ss_pred hHHHHHH
Confidence 4555554
No 144
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=22.09 E-value=1.5e+02 Score=23.07 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=20.0
Q ss_pred hHHHHHHHHhhhhHHHhhhhhHhhHHHhhHhh
Q 041202 126 MADQAKKRVAGMADYVGQKTKEVGQDIQSKVH 157 (166)
Q Consensus 126 qld~Ak~Ri~d~A~~vg~kake~Gq~iq~ka~ 157 (166)
-|+.+|.|+.++-..+-+++|+.-...-+.++
T Consensus 49 ~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~ 80 (104)
T COG4575 49 ALKEARDRLGDTGDAVVQRSKAAADATDDYVR 80 (104)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 46677777777766777777766543333333
No 145
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=22.02 E-value=3e+02 Score=21.78 Aligned_cols=20 Identities=10% Similarity=0.182 Sum_probs=10.5
Q ss_pred hhCCCCCchhHHHHHHHHhh
Q 041202 117 RQKTGSVPEMADQAKKRVAG 136 (166)
Q Consensus 117 rg~~p~g~dqld~Ak~Ri~d 136 (166)
..|.-...+.++.|..+-.+
T Consensus 48 ~~R~~~I~~~l~~Ae~~~~e 67 (175)
T PRK14472 48 EEREKGIQSSIDRAHSAKDE 67 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666655444
No 146
>PF01858 RB_A: Retinoblastoma-associated protein A domain; InterPro: IPR002720 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation. They form a complex with adenovirus E1A and Simian virus 40 (SV40) large T antigen, and may bind and modulate the function of certain cellular proteins with which T and E1A compete for pocket binding. The proteins may act as tumor suppressors, and are potent inhibitors of E2F-mediated trans-activation. This domain has the cyclin fold []. The crystal structure of the Rb pocket bound to a nine-residue E7 peptide containing the LxCxE motif, shared by other Rb-binding viral and cellular proteins, shows that the LxCxE peptide binds a highly conserved groove on the B-box portion of the pocket; the A-box portion appears to be required for the stable folding of the B box (see IPR002719 from INTERPRO). Also highly conserved is the extensive A-B interface, suggesting that it may be an additional protein-binding site. The A and B boxes each contain the cyclin-fold structural motif, with the LxCxE-binding site on the B-box cyclin fold being similar to a Cdk2-binding site of cyclin A and to a TBP-binding site of TFIIB []. The A and B boxes are found at the C-terminal end of the protein; the A-box is on N-terminal side of the B-box.; GO: 0051726 regulation of cell cycle, 0005634 nucleus; PDB: 1O9K_A 3POM_A 1GH6_B 1N4M_A 4ELL_B 1AD6_A 1GUX_A 2R7G_C 4ELJ_A.
Probab=21.96 E-value=2.6e+02 Score=23.04 Aligned_cols=50 Identities=16% Similarity=0.227 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCchhHHHHHHHH-hhhhHHHhhhhhHhhHHHh
Q 041202 104 TALSSLSWVLSILRQKTGSVPEMADQAKKRV-AGMADYVGQKTKEVGQDIQ 153 (166)
Q Consensus 104 ~~ls~lsW~~~y~rg~~p~g~dqld~Ak~Ri-~d~A~~vg~kake~Gq~iq 153 (166)
++....+|+-..+.|.....++++...-+.. .|--..+-+|.++.++.+.
T Consensus 5 ~A~~~~~~L~~~l~~~~~~PS~~L~~~~~~c~~~p~~~i~~rv~~l~~~~~ 55 (194)
T PF01858_consen 5 SAMQSVSWLQALLSGLSDEPSEELLRIFKSCSRDPTESILKRVKQLLEKFC 55 (194)
T ss_dssp HHHHHHHHHHHHHHHS-SS--HHHHHHHHTSSS--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 4678899999999985332245554332211 2233345555555555553
No 147
>TIGR02797 exbB tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.
Probab=21.94 E-value=62 Score=26.80 Aligned_cols=19 Identities=42% Similarity=0.714 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhhhchhhh
Q 041202 59 ALTGTIIGLCVTTPLFIIF 77 (166)
Q Consensus 59 TL~gtvigL~vatPL~iif 77 (166)
.|..|+.||+||.|-++.+
T Consensus 166 ALitTA~GL~VAIPAli~y 184 (211)
T TIGR02797 166 ALLATAIGLVAAIPAVVIY 184 (211)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4778999999999877654
No 148
>PF14219 DUF4328: Domain of unknown function (DUF4328)
Probab=21.90 E-value=1.7e+02 Score=22.99 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=20.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 041202 90 LAVTGFLTSGAFGLTALSSLSWVLSILRQ 118 (166)
Q Consensus 90 l~~~gfl~sg~~g~~~ls~lsW~~~y~rg 118 (166)
....+.+....+-++++..+.|+||=-+-
T Consensus 23 ~~~~~~~~~~~~v~~~V~~l~Wl~rar~n 51 (171)
T PF14219_consen 23 VALLGLLALLLFVAAAVVFLVWLYRARAN 51 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667778888999999985433
No 149
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=21.87 E-value=3.2e+02 Score=21.32 Aligned_cols=12 Identities=8% Similarity=0.130 Sum_probs=5.5
Q ss_pred CchhHHHHHHHH
Q 041202 123 VPEMADQAKKRV 134 (166)
Q Consensus 123 g~dqld~Ak~Ri 134 (166)
..+.+|.|++.-
T Consensus 58 I~~~l~~Ae~~~ 69 (156)
T CHL00118 58 IRKNLTKASEIL 69 (156)
T ss_pred HHHHHHHHHHHH
Confidence 344455554443
No 150
>COG3447 Predicted integral membrane sensor domain [Signal transduction mechanisms]
Probab=21.86 E-value=4.7e+02 Score=23.81 Aligned_cols=37 Identities=27% Similarity=0.449 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhhchhhhchh
Q 041202 44 AMLPLGGTFLALAGVA-----------LTGTIIGLCVTTPLFIIFSPV 80 (166)
Q Consensus 44 tll~~gg~LL~LaGlT-----------L~gtvigL~vatPL~iifSPV 80 (166)
..+++|.++|+.-|.. ..|.++|..+.+|+.+.+=|=
T Consensus 138 l~Aiig~~lL~~~g~~~~~~~~~~~~WwlgdA~giL~~aPl~i~~~~~ 185 (308)
T COG3447 138 LGAIIGSVLLVVLGTPGDDFSEAWFTWWLGDAIGILALAPLGIVIRPN 185 (308)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhHHHHhhhh
Confidence 4456677788888874 578999999999999988763
No 151
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=21.81 E-value=3e+02 Score=19.52 Aligned_cols=16 Identities=13% Similarity=0.019 Sum_probs=11.2
Q ss_pred CchhHHHHHHHHhhhh
Q 041202 123 VPEMADQAKKRVAGMA 138 (166)
Q Consensus 123 g~dqld~Ak~Ri~d~A 138 (166)
..+..+.+-.|+.|..
T Consensus 104 ~~~~~~~~~~R~~~v~ 119 (128)
T PF13515_consen 104 NGDPWQLALERILDVL 119 (128)
T ss_pred CCChHHHHHHHHHHHH
Confidence 3445778889988754
No 152
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.68 E-value=1.7e+02 Score=22.51 Aligned_cols=11 Identities=27% Similarity=0.386 Sum_probs=7.1
Q ss_pred chhHHHHHHHH
Q 041202 124 PEMADQAKKRV 134 (166)
Q Consensus 124 ~dqld~Ak~Ri 134 (166)
-+++|.+|..+
T Consensus 31 ~~eL~~~k~el 41 (128)
T PF06295_consen 31 EQELEQAKQEL 41 (128)
T ss_pred HHHHHHHHHHH
Confidence 45677777654
No 153
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=21.66 E-value=5.5e+02 Score=22.43 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=10.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q 041202 30 AGGGPSASKVLAVLAMLPLGG 50 (166)
Q Consensus 30 ~~~~Psssqvl~~~tll~~gg 50 (166)
++..=|.++.+.+..++.+.+
T Consensus 90 ~sG~is~~~a~~~~i~l~~i~ 110 (297)
T PRK12871 90 PSGKLSSKNAFALFILLAAVT 110 (297)
T ss_pred CCCCcCHHHHHHHHHHHHHHH
Confidence 444446666655544444333
No 154
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=21.59 E-value=5.9e+02 Score=22.77 Aligned_cols=13 Identities=15% Similarity=-0.021 Sum_probs=6.9
Q ss_pred CCHHHHHHHHHHH
Q 041202 34 PSASKVLAVLAML 46 (166)
Q Consensus 34 Psssqvl~~~tll 46 (166)
-..++|++-.+.+
T Consensus 95 ~tisnvv~ss~g~ 107 (313)
T PF05461_consen 95 CTISNVVGSSTGA 107 (313)
T ss_pred hHHHHHHhhhHHH
Confidence 3445566655543
No 155
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=21.36 E-value=6.9e+02 Score=25.22 Aligned_cols=36 Identities=25% Similarity=0.375 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhhhchhhh---chhhHHHHHHHHHH
Q 041202 56 AGVALTGTIIGLCVTTPLFIIF---SPVIVPAAIVLALA 91 (166)
Q Consensus 56 aGlTL~gtvigL~vatPL~iif---SPVLVPaai~~~l~ 91 (166)
+.-.+++|+.-++++.|++.+- ...+-|.++++.++
T Consensus 432 ~~~i~~stlTti~vF~Pl~f~~G~~g~~~~~l~~~v~~a 470 (1021)
T PF00873_consen 432 APPILASTLTTIAVFLPLLFMPGIAGQFFRPLALTVIIA 470 (1021)
T ss_dssp HHHHHHHHHHHHHHTCGGGGSBHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhcCCchHHHHHHHHHHHHHH
Confidence 3445667777779999997522 34555555554444
No 156
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.36 E-value=4.7e+02 Score=23.98 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhhCCC
Q 041202 102 GLTALSSLSWVLSILRQKTG 121 (166)
Q Consensus 102 g~~~ls~lsW~~~y~rg~~p 121 (166)
.+..+-.+.-+|+|+||...
T Consensus 256 av~~i~~i~kVh~~yRgsG~ 275 (313)
T KOG3088|consen 256 AVLSIWVLQKVHSYYRGSGA 275 (313)
T ss_pred HHHHHHHHHHHHHHHHhccH
Confidence 33444556678899999753
No 157
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=21.29 E-value=3.7e+02 Score=23.30 Aligned_cols=13 Identities=15% Similarity=-0.059 Sum_probs=5.1
Q ss_pred HHHHHHHHhhCCC
Q 041202 109 LSWVLSILRQKTG 121 (166)
Q Consensus 109 lsW~~~y~rg~~p 121 (166)
+.+-.+.+-..-|
T Consensus 90 ~~~~~~~l~~~~~ 102 (355)
T COG0628 90 LIEQIQNLIKNLP 102 (355)
T ss_pred HHHHHHHHHHhCc
Confidence 3333344433433
No 158
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=21.24 E-value=1.6e+02 Score=19.38 Aligned_cols=27 Identities=22% Similarity=0.491 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHH
Q 041202 102 GLTALSSLSWVLSILRQKTGSVPEMADQAKKRV 134 (166)
Q Consensus 102 g~~~ls~lsW~~~y~rg~~p~g~dqld~Ak~Ri 134 (166)
|+.++..+.|-.| +|. -|.+|...+||
T Consensus 14 ~~~~l~~f~Wavk--~GQ----fdD~e~~a~ri 40 (45)
T PF03597_consen 14 GLIALAAFLWAVK--SGQ----FDDLEGPAHRI 40 (45)
T ss_pred HHHHHHHHHHHHc--cCC----CCCCcchHhhh
Confidence 3445677889888 443 23455566666
No 159
>TIGR01427 PTS_IIC_fructo PTS system, fructose subfamily, IIC component. This model represents the IIC component, or IIC region of a IIABC or IIBC polypeptide of a phosphotransferase system for carbohydrate transport. Members of this family belong to the fructose-specific subfamily of the broader family (pfam02378) of PTS IIC proteins. Members should be found as part of the same chain or in the same operon as fructose family IIA (TIGR00848) and IIB (TIGR00829) protein regions. A number of bacterial species have members in two different branches of this subfamily, suggesting some diversity in substrate specificity of its members.
Probab=21.22 E-value=6.2e+02 Score=22.86 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHHHH----HHHhhhhHHHHHHHHHHHHHHHHhhCC
Q 041202 79 PVIVPAAIVLALAVT----GFLTSGAFGLTALSSLSWVLSILRQKT 120 (166)
Q Consensus 79 PVLVPaai~~~l~~~----gfl~sg~~g~~~ls~lsW~~~y~rg~~ 120 (166)
|=+.| +++.++... ||+.+=--|+-+.-..+|+.||++..-
T Consensus 90 ~g~~p-G~i~G~~~~~~~~GflGgII~gilag~~~~~lek~ikK~l 134 (346)
T TIGR01427 90 PGLAP-GMIAGLIANNFNSGFLGGIIAGFLAGYVVKGLQKYIKKKL 134 (346)
T ss_pred cCCcH-HHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33466 444455443 566444445555566678888876543
No 160
>TIGR01185 devC DevC protein. This model describes a predicted membrane subunit, DevC, of an ABC transporter known so far from two species of cyanobacteria. Some experimental data from mutational analysis suggest that this protein along with DevA and DevB encoded in the same operon may be involved in the transport/export of glycolipids.
Probab=21.17 E-value=3.1e+02 Score=24.38 Aligned_cols=12 Identities=25% Similarity=0.255 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHh
Q 041202 59 ALTGTIIGLCVT 70 (166)
Q Consensus 59 TL~gtvigL~va 70 (166)
++.|.++|+.++
T Consensus 316 ~~iG~~~G~~lg 327 (380)
T TIGR01185 316 ACLGYLPGWGFA 327 (380)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 161
>PF04211 MtrC: Tetrahydromethanopterin S-methyltransferase, subunit C ; InterPro: IPR005865 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=21.15 E-value=4.7e+02 Score=23.43 Aligned_cols=24 Identities=17% Similarity=0.175 Sum_probs=13.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q 041202 33 GPSASKVLAVLAMLPLGGTFLALA 56 (166)
Q Consensus 33 ~Psssqvl~~~tll~~gg~LL~La 56 (166)
+||-+|-=....++..|..-++..
T Consensus 194 GPnE~q~RTL~la~~~G~ls~ii~ 217 (262)
T PF04211_consen 194 GPNESQDRTLTLAVECGFLSMIIF 217 (262)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHH
Confidence 777777655555444444444433
No 162
>PRK08456 flagellar motor protein MotA; Validated
Probab=21.09 E-value=3.3e+02 Score=23.36 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhhchhhhchhhHHHHHHHHHHHH
Q 041202 60 LTGTIIGLCVTTPLFIIFSPVIVPAAIVLALAVT 93 (166)
Q Consensus 60 L~gtvigL~vatPL~iifSPVLVPaai~~~l~~~ 93 (166)
+.|||+|++-+.= -+-.|-.+=..|..+|+.+
T Consensus 158 llGTVlGlI~~~~--~l~dp~~lg~gIa~ALvtT 189 (257)
T PRK08456 158 LVGAVMGLMLALQ--KLDNPAEMAAGIAGAFTAT 189 (257)
T ss_pred HHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHH
Confidence 5688999887732 2235544444555555444
No 163
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=21.09 E-value=3.8e+02 Score=27.58 Aligned_cols=57 Identities=19% Similarity=0.226 Sum_probs=0.0
Q ss_pred hchhhHHHHHHHHHHHHHHHhh---------hhHHHHHHHHHHHH--HHHHhhCCCCCchhHHHHHHHHhhh
Q 041202 77 FSPVIVPAAIVLALAVTGFLTS---------GAFGLTALSSLSWV--LSILRQKTGSVPEMADQAKKRVAGM 137 (166)
Q Consensus 77 fSPVLVPaai~~~l~~~gfl~s---------g~~g~~~ls~lsW~--~~y~rg~~p~g~dqld~Ak~Ri~d~ 137 (166)
|-|.|.|+..++++.++-.+.+ -.+++.+++.+.|+ +...|=+-|. -+.|-+|+...
T Consensus 17 ~WP~l~~~l~v~~lfla~~~~Gl~~~lp~~~~~~~l~~~~~~~~~~l~~~~rfr~P~----~~ea~~Rle~~ 84 (851)
T TIGR02302 17 LWPHLLRVMSLVGLFLSLGWAGLFLALPFWLHIAGLVLFAALALVALIPAIRFRWPS----RDEALARLERN 84 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC----HHHHHHHHHHh
No 164
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=21.07 E-value=3.2e+02 Score=29.81 Aligned_cols=34 Identities=12% Similarity=0.222 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhhchhhhchhhHHHHHHHHHHH
Q 041202 59 ALTGTIIGLCVTTPLFIIFSPVIVPAAIVLALAV 92 (166)
Q Consensus 59 TL~gtvigL~vatPL~iifSPVLVPaai~~~l~~ 92 (166)
++.+++..++.+.|||++-+..+-|.++++.+.+
T Consensus 1010 ILdTnLTTLIA~lPLf~fGtG~vkgFAvTLiIGI 1043 (1403)
T PRK12911 1010 IFDSNLTTILASALLLMLDTGPIKGFALTLIIGI 1043 (1403)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 3445666667788898888777888887766643
No 165
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=20.99 E-value=4.4e+02 Score=21.14 Aligned_cols=10 Identities=30% Similarity=0.730 Sum_probs=4.8
Q ss_pred hhHHHHHHHH
Q 041202 125 EMADQAKKRV 134 (166)
Q Consensus 125 dqld~Ak~Ri 134 (166)
+.++.|+..+
T Consensus 75 ~~l~ea~~~i 84 (199)
T PF10112_consen 75 EILEEAKEKI 84 (199)
T ss_pred HHHHHHHHHH
Confidence 4455555433
No 166
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=20.83 E-value=5.2e+02 Score=21.86 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhCCCCCchhHHHHHHHHhhhhHHHhhhhhHh
Q 041202 107 SSLSWVLSILRQKTGSVPEMADQAKKRVAGMADYVGQKTKEV 148 (166)
Q Consensus 107 s~lsW~~~y~rg~~p~g~dqld~Ak~Ri~d~A~~vg~kake~ 148 (166)
..+||+.-.++-..|. .+.+-.. ..+.|+|+..|++=+
T Consensus 86 ~~lsl~~~~l~p~r~~-rqaLa~~---y~~lA~yl~~ka~~~ 123 (284)
T PF12805_consen 86 LLLSLLWWPLRPYRPV-RQALAEC---YRALADYLRAKARFF 123 (284)
T ss_pred HHHHHHHHHHcCCCHH-HHHHHHH---HHHHHHHHHHHHhcC
Confidence 4566777766554441 1212111 234555666665543
No 167
>TIGR02805 exbB2 tonB-system energizer ExbB, group 2. Members of this protein family appear to be the ExbB protein of an ExbBD proton-transporting membrane complex that, by means of TonB, energizes transport by TonB-dependent receptors. Note that this family represents one of at least two distinct groups TolQ homologs designated ExbB - see also TIGR02797. Each group associates with a distinct group of ExbD proteins, and a single species may have two ExbB/ExbD/TonB systems.
Probab=20.67 E-value=86 Score=25.33 Aligned_cols=21 Identities=33% Similarity=0.689 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhhhchhhhc
Q 041202 58 VALTGTIIGLCVTTPLFIIFS 78 (166)
Q Consensus 58 lTL~gtvigL~vatPL~iifS 78 (166)
..|..|+.||+++.|-++..+
T Consensus 101 ~ALitTa~GL~VAIpali~yn 121 (138)
T TIGR02805 101 LALKATALGLLVAIPSLVFYN 121 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999998877654
No 168
>PRK10132 hypothetical protein; Provisional
Probab=20.55 E-value=1.8e+02 Score=22.25 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=19.2
Q ss_pred chhHHHHHHHHhhhhHHHhhhhhHhhHHHhhHhh
Q 041202 124 PEMADQAKKRVAGMADYVGQKTKEVGQDIQSKVH 157 (166)
Q Consensus 124 ~dqld~Ak~Ri~d~A~~vg~kake~Gq~iq~ka~ 157 (166)
.+.++.+|.|+.|.-. +-+++|+......+.++
T Consensus 51 ~~~L~~ar~~l~~~~~-~~~~~~~a~~~~~~~V~ 83 (108)
T PRK10132 51 QALLKETRARMHGRTR-VQQAARDAVGCADTFVR 83 (108)
T ss_pred HHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHH
Confidence 4567788877776333 45666665554444444
No 169
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=20.50 E-value=2.7e+02 Score=18.37 Aligned_cols=13 Identities=23% Similarity=0.521 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHH
Q 041202 102 GLTALSSLSWVLS 114 (166)
Q Consensus 102 g~~~ls~lsW~~~ 114 (166)
.+..+.++.|.|+
T Consensus 20 ~~~Figiv~wa~~ 32 (48)
T cd01324 20 ALFFLGVVVWAFR 32 (48)
T ss_pred HHHHHHHHHHHhC
Confidence 4566778889987
No 170
>PF04982 HPP: HPP family; InterPro: IPR007065 These proteins are integral membrane proteins with four transmembrane spanning helices. The most conserved region of an alignment of the proteins is a motif HPP. The function of these proteins is uncertain but they may be transporters.
Probab=20.49 E-value=3.9e+02 Score=20.32 Aligned_cols=81 Identities=20% Similarity=0.210 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhchhhHHHHHHHHHHHHH--------HHhhhhHHHHHHHHHH
Q 041202 39 VLAVLAMLPLGGTFLALAGVALTGTIIGLCVTTPLFIIFSPVIVPAAIVLALAVTG--------FLTSGAFGLTALSSLS 110 (166)
Q Consensus 39 vl~~~tll~~gg~LL~LaGlTL~gtvigL~vatPL~iifSPVLVPaai~~~l~~~g--------fl~sg~~g~~~ls~ls 110 (166)
+.+-+....+|..+.-+.|-+.....++..++.-++.++-=+-=|++.+..+.+.+ .+..-.+|...+..+.
T Consensus 28 i~gh~isa~iG~~~~~~~~~~~~~~alav~lai~~M~~~~~~HPPA~Atall~~l~~~~~~~~~~~~pVl~g~~il~~~a 107 (120)
T PF04982_consen 28 IGGHLISALIGVLCVYLFGDPWWAAALAVGLAIVLMVLTRTVHPPAGATALLAVLGGASLGWGFVLIPVLLGSLILVVVA 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHcCCCCchhhhhhhhhhcccccCchHHHHHHHHHHHHHHHHH
Confidence 44444555556666666676555556666666666666665555655544443322 1222355666778888
Q ss_pred HHHHHHhhC
Q 041202 111 WVLSILRQK 119 (166)
Q Consensus 111 W~~~y~rg~ 119 (166)
|++|.+.++
T Consensus 108 ~~~~~l~~r 116 (120)
T PF04982_consen 108 LLFNNLIRR 116 (120)
T ss_pred HHHHcCccC
Confidence 999999863
No 171
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=20.49 E-value=18 Score=25.90 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=2.6
Q ss_pred HHHHHHHHHHHhhCCCCCchhHHHHHH
Q 041202 106 LSSLSWVLSILRQKTGSVPEMADQAKK 132 (166)
Q Consensus 106 ls~lsW~~~y~rg~~p~g~dqld~Ak~ 132 (166)
+-++.|+||+-+. .-|+-.+|+-|.
T Consensus 27 lLIlf~iyR~rkk--dEGSY~l~e~K~ 51 (64)
T PF01034_consen 27 LLILFLIYRMRKK--DEGSYDLDEPKP 51 (64)
T ss_dssp ----------S--------SS--S---
T ss_pred HHHHHHHHHHHhc--CCCCccCCCCCc
Confidence 3457788886433 346777887774
Done!