Query 041202
Match_columns 166
No_of_seqs 119 out of 196
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 07:39:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041202.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041202hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lx0_A Membrane fusion protein 74.4 4.5 0.00015 24.3 3.7 16 103-118 16-31 (32)
2 1lyp_A CAP18; lipopolysacchari 57.3 12 0.00041 22.4 3.2 26 131-156 3-28 (32)
3 1eze_A Cholesteryl ester trans 45.0 15 0.00051 22.9 2.4 30 121-154 2-31 (38)
4 2l8s_A Integrin alpha-1; trans 25.0 1.2E+02 0.0042 20.0 4.4 31 99-129 19-49 (54)
5 2l2t_A Receptor tyrosine-prote 24.4 1.2E+02 0.0042 19.1 4.2 22 96-119 16-37 (44)
6 2k1k_A Ephrin type-A receptor 20.6 1.3E+02 0.0044 18.2 3.7 20 93-112 14-33 (38)
7 2x43_S Sherp; membrane protein 20.1 41 0.0014 23.3 1.4 16 144-159 23-38 (67)
8 1zv1_A Doublesex protein; UBA 16.8 1.2E+02 0.0041 20.9 3.1 20 127-146 41-60 (65)
9 2ks1_B Epidermal growth factor 14.5 1.1E+02 0.0037 19.3 2.3 20 98-119 19-38 (44)
10 1qkr_A Vinculin, tail domain; 13.9 1.3E+02 0.0045 24.2 3.1 46 112-158 55-101 (188)
No 1
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=74.40 E-value=4.5 Score=24.28 Aligned_cols=16 Identities=31% Similarity=0.494 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhh
Q 041202 103 LTALSSLSWVLSILRQ 118 (166)
Q Consensus 103 ~~~ls~lsW~~~y~rg 118 (166)
++.++.-.|+++|+..
T Consensus 16 ltflafgfwlfkylqk 31 (32)
T 2lx0_A 16 LTFLAFGFWLFKYLQK 31 (32)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4556777899999863
No 2
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=57.32 E-value=12 Score=22.39 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=18.1
Q ss_pred HHHHhhhhHHHhhhhhHhhHHHhhHh
Q 041202 131 KKRVAGMADYVGQKTKEVGQDIQSKV 156 (166)
Q Consensus 131 k~Ri~d~A~~vg~kake~Gq~iq~ka 156 (166)
|.|+..--..++||-|..||.||+-.
T Consensus 3 rkrlrkfrnkikeklkkigqkiqgll 28 (32)
T 1lyp_A 3 RKRLRKFRNKIKEKLKKIGQKIQGLL 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34454445567789999999988754
No 3
>1eze_A Cholesteryl ester transferase inhibitor protein; amphipathic helix; NMR {Synthetic} SCOP: j.39.1.1 PDB: 1opp_A
Probab=45.01 E-value=15 Score=22.93 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=20.9
Q ss_pred CCCchhHHHHHHHHhhhhHHHhhhhhHhhHHHhh
Q 041202 121 GSVPEMADQAKKRVAGMADYVGQKTKEVGQDIQS 154 (166)
Q Consensus 121 p~g~dqld~Ak~Ri~d~A~~vg~kake~Gq~iq~ 154 (166)
|...+.+ .|+.+....+.||+|+.=+.|++
T Consensus 2 ptie~~f----dkvke~g~tl~eK~k~~~~~i~~ 31 (38)
T 1eze_A 2 PDVSSAL----DKLKEFGNTLEDKAWEVINRIKQ 31 (38)
T ss_dssp CGGGGSS----HHHHHHTTHHHHHHHHHHHHHHT
T ss_pred ccHHHHH----HHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555 67777778888888887776654
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=24.96 E-value=1.2e+02 Score=20.01 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCCchhHHH
Q 041202 99 GAFGLTALSSLSWVLSILRQKTGSVPEMADQ 129 (166)
Q Consensus 99 g~~g~~~ls~lsW~~~y~rg~~p~g~dqld~ 129 (166)
|-+-++.+..+.|-..+|+++.+...+.+|.
T Consensus 19 GLLLL~Lii~~LwK~GFFKR~~~~~~~~~~~ 49 (54)
T 2l8s_A 19 GLLLLMLLILALWKIGFFKRPLKKKMEKLEH 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSCCCCC---
T ss_pred HHHHHHHHHHHHHHcCcccCCCcchhhHHhh
Confidence 3345667788999999999998877776764
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=24.45 E-value=1.2e+02 Score=19.11 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=13.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHhhC
Q 041202 96 LTSGAFGLTALSSLSWVLSILRQK 119 (166)
Q Consensus 96 l~sg~~g~~~ls~lsW~~~y~rg~ 119 (166)
.-+|-+++..+..+.|+|- |++
T Consensus 16 VVgGv~~v~ii~~~~~~~~--RRR 37 (44)
T 2l2t_A 16 VIGGLFILVIVGLTFAVYV--RRK 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HTT
T ss_pred ehHHHHHHHHHHHHHHHHh--hhh
Confidence 3345566667776777764 544
No 6
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=20.63 E-value=1.3e+02 Score=18.18 Aligned_cols=20 Identities=10% Similarity=0.057 Sum_probs=9.9
Q ss_pred HHHHhhhhHHHHHHHHHHHH
Q 041202 93 TGFLTSGAFGLTALSSLSWV 112 (166)
Q Consensus 93 ~gfl~sg~~g~~~ls~lsW~ 112 (166)
+|...+...|++.+..+.|.
T Consensus 14 AGiVvG~v~gv~li~~l~~~ 33 (38)
T 2k1k_A 14 VAVIFGLLLGAALLLGILVF 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHHH
Confidence 44444444455555555553
No 7
>2x43_S Sherp; membrane protein; NMR {Leishmania major}
Probab=20.14 E-value=41 Score=23.28 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=6.8
Q ss_pred hhhHhhHHHhhHhhhh
Q 041202 144 KTKEVGQDIQSKVHEA 159 (166)
Q Consensus 144 kake~Gq~iq~ka~da 159 (166)
|++|..+.+..|+.|.
T Consensus 23 K~qElKdga~~KAael 38 (67)
T 2x43_S 23 KIQELKDDVGNKAAEV 38 (67)
T ss_dssp HHHHTTTTTTTHHHHH
T ss_pred HHHHHHHhHHhHHHHH
Confidence 4444444444444443
No 8
>1zv1_A Doublesex protein; UBA domain, dimerization, sex determination, transcription factor, protein binding; 1.60A {Drosophila melanogaster} PDB: 2jz0_A
Probab=16.81 E-value=1.2e+02 Score=20.89 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=16.0
Q ss_pred HHHHHHHHhhhhHHHhhhhh
Q 041202 127 ADQAKKRVAGMADYVGQKTK 146 (166)
Q Consensus 127 ld~Ak~Ri~d~A~~vg~kak 146 (166)
+|.|.+||.|.-.-+.++.|
T Consensus 41 ~eeAsrrI~Eg~~~v~~ysr 60 (65)
T 1zv1_A 41 IEEASRRIEEGQYVVNEYSR 60 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 89999999986666666665
No 9
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=14.52 E-value=1.1e+02 Score=19.26 Aligned_cols=20 Identities=10% Similarity=0.036 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhhC
Q 041202 98 SGAFGLTALSSLSWVLSILRQK 119 (166)
Q Consensus 98 sg~~g~~~ls~lsW~~~y~rg~ 119 (166)
+|-+++..+..+.|+|- |++
T Consensus 19 gGv~~~~ii~~~~~~~~--RRr 38 (44)
T 2ks1_B 19 GALLLLLVVALGIGLFM--RRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHH--HTT
T ss_pred HHHHHHHHHHHHHHHHh--hhh
Confidence 44555666666667654 544
No 10
>1qkr_A Vinculin, tail domain; actin cytoskeleton, cell adhesion, helical bundle, lipid binding; 1.8A {Gallus gallus} SCOP: a.24.9.1 PDB: 3h2u_A 3h2v_A 1rke_B 3myi_A
Probab=13.90 E-value=1.3e+02 Score=24.18 Aligned_cols=46 Identities=22% Similarity=0.352 Sum_probs=0.0
Q ss_pred HHHHHhhCCCCCchhHHHHHHHHhhhhHHHhhhhhHhhHH-HhhHhhh
Q 041202 112 VLSILRQKTGSVPEMADQAKKRVAGMADYVGQKTKEVGQD-IQSKVHE 158 (166)
Q Consensus 112 ~~~y~rg~~p~g~dqld~Ak~Ri~d~A~~vg~kake~Gq~-iq~ka~d 158 (166)
||.|.||......|-+..||. |++.+..+...+|++... ..++.++
T Consensus 55 M~~ftrG~g~t~~dlI~~Ak~-iAe~~~~l~k~ar~iA~qc~D~~~k~ 101 (188)
T 1qkr_A 55 MSRLVRGGSGNKRALIQCAKD-IAKASDEVTRLAKEVAKQCTDKRIRT 101 (188)
T ss_dssp HHHHTTSCGGGHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHccCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCChHHHH
Done!