Query 041202
Match_columns 166
No_of_seqs 119 out of 196
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 07:39:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041202.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041202hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90m_ f.23.25.1 (M:) PetM su 70.8 2.7 0.0002 24.2 3.7 22 48-69 5-26 (34)
2 d1pv7a_ f.38.1.2 (A:) Lactose 32.6 48 0.0035 22.9 5.8 12 127-138 406-417 (417)
3 d1ijwc_ a.4.1.2 (C:) HIN recom 26.6 19 0.0014 21.2 2.3 26 123-149 7-32 (47)
4 d3dhwa1 f.58.1.1 (A:6-208) D-m 21.5 1.1E+02 0.0081 20.8 6.1 19 57-75 13-31 (203)
5 d2vcha1 c.87.1.10 (A:6-476) Hy 18.0 62 0.0045 23.7 4.1 32 122-153 409-442 (471)
6 d1qkra_ a.24.9.1 (A:) Vinculin 18.0 57 0.0042 23.9 3.9 43 107-150 48-90 (181)
7 d2acva1 c.87.1.10 (A:3-463) Tr 16.6 48 0.0035 24.2 3.1 30 123-152 409-438 (461)
8 d2o7ta2 a.121.1.1 (A:79-188) T 16.2 56 0.0041 21.6 3.2 28 123-150 34-61 (110)
9 d1w0da_ c.77.1.1 (A:) 3-isopro 15.2 36 0.0027 26.9 2.3 49 104-154 287-335 (337)
10 d2avda1 c.66.1.1 (A:44-262) CO 14.2 99 0.0072 22.4 4.5 48 110-157 9-56 (219)
No 1
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=70.77 E-value=2.7 Score=24.18 Aligned_cols=22 Identities=36% Similarity=0.747 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041202 48 LGGTFLALAGVALTGTIIGLCV 69 (166)
Q Consensus 48 ~gg~LL~LaGlTL~gtvigL~v 69 (166)
+.|+-+...|+||.|..||+++
T Consensus 5 iagta~tmig~tl~glaigfvl 26 (34)
T d1q90m_ 5 IAGTALTMVGMTLVGLAIGFVL 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchhHHHHHHHHHHHHHHHhh
Confidence 4567788899999999999875
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=32.61 E-value=48 Score=22.93 Aligned_cols=12 Identities=17% Similarity=0.271 Sum_probs=7.2
Q ss_pred HHHHHHHHhhhh
Q 041202 127 ADQAKKRVAGMA 138 (166)
Q Consensus 127 ld~Ak~Ri~d~A 138 (166)
++..|+|+.|.|
T Consensus 406 ~~~~r~~~~e~a 417 (417)
T d1pv7a_ 406 LSLLRRQVNEVA 417 (417)
T ss_dssp TTHHHHHHHHHC
T ss_pred cchhHhhhccCC
Confidence 445677776643
No 3
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=26.60 E-value=19 Score=21.24 Aligned_cols=26 Identities=12% Similarity=-0.059 Sum_probs=19.6
Q ss_pred CchhHHHHHHHHhhhhHHHhhhhhHhh
Q 041202 123 VPEMADQAKKRVAGMADYVGQKTKEVG 149 (166)
Q Consensus 123 g~dqld~Ak~Ri~d~A~~vg~kake~G 149 (166)
.+||+++||+++++- .-+.+=|+++|
T Consensus 7 t~~q~~~a~~l~~~G-~s~~~iA~~~g 32 (47)
T d1ijwc_ 7 NKHEQEQISRLLEKG-HPRQQLAIIFG 32 (47)
T ss_dssp CHHHHHHHHHHHHTT-CCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCC-CCHHHHHHHHC
Confidence 478999999998763 45667777776
No 4
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=21.46 E-value=1.1e+02 Score=20.76 Aligned_cols=19 Identities=11% Similarity=0.398 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhhhchh
Q 041202 57 GVALTGTIIGLCVTTPLFI 75 (166)
Q Consensus 57 GlTL~gtvigL~vatPL~i 75 (166)
.+++.++++++++++|+=+
T Consensus 13 ~is~~~~~i~~ilg~~lg~ 31 (203)
T d3dhwa1 13 AMTFVSGFFGFVIGLPVGV 31 (203)
T ss_dssp HHHHHHHHHHHHTTGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566677777777776533
No 5
>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=18.05 E-value=62 Score=23.65 Aligned_cols=32 Identities=19% Similarity=0.068 Sum_probs=21.7
Q ss_pred CCchhHHHHHHHHh--hhhHHHhhhhhHhhHHHh
Q 041202 122 SVPEMADQAKKRVA--GMADYVGQKTKEVGQDIQ 153 (166)
Q Consensus 122 ~g~dqld~Ak~Ri~--d~A~~vg~kake~Gq~iq 153 (166)
..+|++..|-+|+- +....+++|+++.++.++
T Consensus 409 ~t~~~l~~ai~~vl~~~~~~~~r~ra~~l~e~~~ 442 (471)
T d2vcha1 409 VRREEVARVVKGLMEGEEGKGVRNKMKELKEAAC 442 (471)
T ss_dssp CCHHHHHHHHHHHHTSTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 35677888877774 234567788888776554
No 6
>d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=18.04 E-value=57 Score=23.94 Aligned_cols=43 Identities=23% Similarity=0.276 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhCCCCCchhHHHHHHHHhhhhHHHhhhhhHhhH
Q 041202 107 SSLSWVLSILRQKTGSVPEMADQAKKRVAGMADYVGQKTKEVGQ 150 (166)
Q Consensus 107 s~lsW~~~y~rg~~p~g~dqld~Ak~Ri~d~A~~vg~kake~Gq 150 (166)
+...=||.|.||..|.-.|-+..|| .|++.+..+-+.+|++..
T Consensus 48 ~~m~~m~~f~rg~g~~k~dLI~aAK-~iA~a~~~L~~~Ar~iA~ 90 (181)
T d1qkra_ 48 LLMAEMSRLVRGGSGNKRALIQCAK-DIAKASDEVTRLAKEVAK 90 (181)
T ss_dssp HHHHHHHHHTTSCGGGHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHc
Confidence 4466788999988776555555555 588888888888887665
No 7
>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase UGT71G1 {Medicago truncatula [TaxId: 3880]}
Probab=16.59 E-value=48 Score=24.24 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=17.3
Q ss_pred CchhHHHHHHHHhhhhHHHhhhhhHhhHHH
Q 041202 123 VPEMADQAKKRVAGMADYVGQKTKEVGQDI 152 (166)
Q Consensus 123 g~dqld~Ak~Ri~d~A~~vg~kake~Gq~i 152 (166)
.+|++..|-+++-+.-+..++|++|.++.+
T Consensus 409 t~~~l~~a~~~vl~~d~~~r~~a~~l~~~~ 438 (461)
T d2acva1 409 AAEEIEKGLKDLMDKDSIVHKKVQEMKEMS 438 (461)
T ss_dssp CHHHHHHHHHHHTCTTCTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 456676666666533334566666666543
No 8
>d2o7ta2 a.121.1.1 (A:79-188) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=16.19 E-value=56 Score=21.58 Aligned_cols=28 Identities=11% Similarity=0.172 Sum_probs=23.7
Q ss_pred CchhHHHHHHHHhhhhHHHhhhhhHhhH
Q 041202 123 VPEMADQAKKRVAGMADYVGQKTKEVGQ 150 (166)
Q Consensus 123 g~dqld~Ak~Ri~d~A~~vg~kake~Gq 150 (166)
..+++..+|.|+.+....+-++|++.|.
T Consensus 34 ~~~~~~~~r~~l~~~~~~ll~rA~~aG~ 61 (110)
T d2o7ta2 34 LPDEVSALRRTTEKNTTTLINLAKQHGL 61 (110)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4667999999999999999999988773
No 9
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=15.15 E-value=36 Score=26.87 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCchhHHHHHHHHhhhhHHHhhhhhHhhHHHhh
Q 041202 104 TALSSLSWVLSILRQKTGSVPEMADQAKKRVAGMADYVGQKTKEVGQDIQS 154 (166)
Q Consensus 104 ~~ls~lsW~~~y~rg~~p~g~dqld~Ak~Ri~d~A~~vg~kake~Gq~iq~ 154 (166)
+.+-+.++|++|+-. +..+++++.|-.+.-..-..=+-+|+|+|+++-.
T Consensus 287 a~IlS~amML~~lg~--~~~a~~i~~Av~~~l~~~~~~~~~T~d~g~avi~ 335 (337)
T d1w0da_ 287 AAIMSVALLLSHLGE--HDAAARVDRAVEAHLATRGSERLATSDVGERIAA 335 (337)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHh
Confidence 345667888998732 2235556655544422111112368899887644
No 10
>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.17 E-value=99 Score=22.42 Aligned_cols=48 Identities=10% Similarity=-0.082 Sum_probs=28.9
Q ss_pred HHHHHHHhhCCCCCchhHHHHHHHHhhhhHHHhhhhhHhhHHHhhHhh
Q 041202 110 SWVLSILRQKTGSVPEMADQAKKRVAGMADYVGQKTKEVGQDIQSKVH 157 (166)
Q Consensus 110 sW~~~y~rg~~p~g~dqld~Ak~Ri~d~A~~vg~kake~Gq~iq~ka~ 157 (166)
.|+++|+....+..++.++..+++-.+.....-.-..|.|+.++.=++
T Consensus 9 ~~l~~Y~~~~~~~~~~~l~~l~~~t~~~~~~~~~i~~~~g~lL~~L~~ 56 (219)
T d2avda1 9 SRLWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLAR 56 (219)
T ss_dssp SHHHHHHHHTTCCCCHHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHH
Confidence 378999999888778777776665432211011234566776655444
Done!