BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041205
(535 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FPE|A Chain A, Crystal Structure Of Mtnas In Complex With
Thermonicotianamine
pdb|3FPE|B Chain B, Crystal Structure Of Mtnas In Complex With
Thermonicotianamine
pdb|3FPF|A Chain A, Crystal Structure Of Mtnas In Complex With Mta And Tna
pdb|3FPF|B Chain B, Crystal Structure Of Mtnas In Complex With Mta And Tna
Length = 298
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 85 LELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMP 144
LE+E A + + P L F +Y Y++L K E G ++ F+G GP+P
Sbjct: 80 LEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRG----ERAVFIGGGPLP 135
Query: 145 LTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEY 204
LT I+L+ H+ + ++I+ L+R+++ + +T D V + L E+
Sbjct: 136 LTGILLS--HVYGMRVNVVEIEPDIAELSRKVIEGLG--VDGVNVITGD-ETVIDGL-EF 189
Query: 205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLY-PVVEHELFDFKVLS 263
D +++AALA E K ++ +I +Y+ ++ R+ G RA LY PV + ++ F+
Sbjct: 190 DVLMVAALA---EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFRRAG 246
Query: 264 IFHPTNDVINS 274
+ P+ V N+
Sbjct: 247 VVLPSGKVNNT 257
>pdb|3FPG|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas
pdb|3FPG|B Chain B, Crystal Structure Of E81q Mutant Of Mtnas
pdb|3FPH|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
L-Glutamate
pdb|3FPH|B Chain B, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
L-Glutamate
pdb|3FPJ|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
S- Adenosylmethionine
pdb|3FPJ|B Chain B, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
S- Adenosylmethionine
Length = 298
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 85 LELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMP 144
L++E A + + P L F +Y Y++L K E G ++ F+G GP+P
Sbjct: 80 LQMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRG----ERAVFIGGGPLP 135
Query: 145 LTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEY 204
LT I+L+ H+ + ++I+ L+R+++ + +T D V + L E+
Sbjct: 136 LTGILLS--HVYGMRVNVVEIEPDIAELSRKVIEGLG--VDGVNVITGD-ETVIDGL-EF 189
Query: 205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLY-PVVEHELFDFKVLS 263
D +++AALA E K ++ +I +Y+ ++ R+ G RA LY PV + ++ F+
Sbjct: 190 DVLMVAALA---EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFRRAG 246
Query: 264 IFHPTNDVINS 274
+ P+ V N+
Sbjct: 247 VVLPSGKVNNT 257
>pdb|3O31|A Chain A, E81q Mutant Of Mtnas In Complex With A Reaction
Intermediate
pdb|3O31|B Chain B, E81q Mutant Of Mtnas In Complex With A Reaction
Intermediate
Length = 296
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 85 LELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMP 144
L++E A + + P L F +Y Y++L K E G ++ F+G GP+P
Sbjct: 79 LQMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRG----ERAVFIGGGPLP 134
Query: 145 LTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEY 204
LT I+L+ H+ + ++I+ L+R+++ + +T D V + L E+
Sbjct: 135 LTGILLS--HVYGMRVNVVEIEPDIAELSRKVIEGLG--VDGVNVITGD-ETVIDGL-EF 188
Query: 205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLY-PVVEHELFDFKVLS 263
D +++AALA E K ++ +I +Y+ ++ R+ G RA LY PV + ++ F+
Sbjct: 189 DVLMVAALA---EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFRRAG 245
Query: 264 IFHPTNDVINS 274
+ P+ V N+
Sbjct: 246 VVLPSGKVNNT 256
>pdb|1F7C|A Chain A, Crystal Structure Of The Bh Domain From Graf, The Gtpase
Regulator Associated With Focal Adhesion Kinase
Length = 231
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 37/89 (41%)
Query: 410 IQKADRVIPKSHAADAEKIPLSTTWDIALANLLRVAYLLELHRPLAMKSFDGYIQMAQNL 469
+QK ++ A + + W+I YL L PL M F A L
Sbjct: 68 VQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKL 127
Query: 470 EAAQKQVTELSEKIRSEQDKNRQLRNCIL 498
E + +V+E+ + +KNRQ+ + ++
Sbjct: 128 ENQESRVSEIHSLVHRLPEKNRQMLHLLM 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,782,408
Number of Sequences: 62578
Number of extensions: 452547
Number of successful extensions: 1466
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1459
Number of HSP's gapped (non-prelim): 22
length of query: 535
length of database: 14,973,337
effective HSP length: 103
effective length of query: 432
effective length of database: 8,527,803
effective search space: 3684010896
effective search space used: 3684010896
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)