Query 041205
Match_columns 535
No_of_seqs 264 out of 913
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 04:49:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041205.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041205hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03075 nicotianamine synthas 100.0 2E-69 4.3E-74 546.6 30.8 271 9-281 2-275 (296)
2 PF03059 NAS: Nicotianamine sy 100.0 4.2E-69 9.2E-74 539.7 19.4 267 13-281 3-272 (276)
3 COG4122 Predicted O-methyltran 99.7 6.8E-18 1.5E-22 165.6 11.2 135 101-241 29-167 (219)
4 PF01596 Methyltransf_3: O-met 99.7 7.4E-18 1.6E-22 163.2 9.4 120 117-241 31-156 (205)
5 PF12847 Methyltransf_18: Meth 99.7 3.8E-17 8.1E-22 138.0 11.0 107 131-240 1-111 (112)
6 PLN02476 O-methyltransferase 99.7 1.6E-16 3.5E-21 160.7 11.1 119 118-241 105-229 (278)
7 PLN02589 caffeoyl-CoA O-methyl 99.7 3.5E-16 7.5E-21 155.7 12.9 120 117-241 65-191 (247)
8 PLN02781 Probable caffeoyl-CoA 99.7 4.2E-16 9E-21 152.7 13.1 115 122-241 59-179 (234)
9 PF01209 Ubie_methyltran: ubiE 99.6 8.3E-16 1.8E-20 151.1 11.5 112 127-241 43-154 (233)
10 COG2226 UbiE Methylase involve 99.6 1.5E-15 3.4E-20 150.7 13.2 108 129-240 49-156 (238)
11 PLN02244 tocopherol O-methyltr 99.6 4.6E-15 1E-19 152.2 15.3 107 130-240 117-223 (340)
12 PF13847 Methyltransf_31: Meth 99.6 4.5E-15 9.8E-20 133.8 12.7 110 130-242 2-112 (152)
13 TIGR02752 MenG_heptapren 2-hep 99.6 2.7E-14 5.8E-19 136.3 15.0 113 125-240 39-151 (231)
14 PF08241 Methyltransf_11: Meth 99.6 9.8E-15 2.1E-19 117.8 10.0 95 136-238 1-95 (95)
15 PLN02233 ubiquinone biosynthes 99.6 3.3E-14 7E-19 141.0 14.1 112 127-240 69-182 (261)
16 PRK00107 gidB 16S rRNA methylt 99.5 6.5E-14 1.4E-18 133.8 12.5 103 130-241 44-146 (187)
17 PRK11873 arsM arsenite S-adeno 99.5 7.3E-14 1.6E-18 137.3 13.1 110 128-240 74-183 (272)
18 PRK15451 tRNA cmo(5)U34 methyl 99.5 1.4E-13 3E-18 134.9 14.0 126 106-240 36-164 (247)
19 PRK11036 putative S-adenosyl-L 99.5 1.2E-13 2.6E-18 135.2 13.4 105 130-239 43-148 (255)
20 TIGR00138 gidB 16S rRNA methyl 99.5 2.8E-13 6E-18 128.2 15.0 101 131-240 42-142 (181)
21 TIGR02469 CbiT precorrin-6Y C5 99.5 4.3E-13 9.3E-18 114.1 14.3 109 124-239 12-121 (124)
22 TIGR00740 methyltransferase, p 99.5 3.6E-13 7.9E-18 130.3 14.8 108 130-241 52-162 (239)
23 PRK13944 protein-L-isoaspartat 99.5 3E-13 6.4E-18 129.3 14.0 113 121-241 62-174 (205)
24 PTZ00098 phosphoethanolamine N 99.5 3.1E-13 6.7E-18 134.2 13.7 113 121-240 42-156 (263)
25 PRK00216 ubiE ubiquinone/menaq 99.5 1.2E-12 2.7E-17 123.4 16.5 109 129-240 49-158 (239)
26 PLN02396 hexaprenyldihydroxybe 99.5 1.9E-13 4.1E-18 140.7 11.2 107 130-241 130-236 (322)
27 PRK14103 trans-aconitate 2-met 99.5 3.6E-13 7.7E-18 131.7 12.5 103 126-240 24-126 (255)
28 PF02353 CMAS: Mycolic acid cy 99.5 5.4E-13 1.2E-17 134.3 13.5 127 107-240 34-166 (273)
29 PRK13942 protein-L-isoaspartat 99.5 6.4E-13 1.4E-17 128.0 13.3 110 121-239 66-175 (212)
30 TIGR00080 pimt protein-L-isoas 99.5 6.6E-13 1.4E-17 127.2 13.1 110 121-239 67-176 (215)
31 PRK00377 cbiT cobalt-precorrin 99.5 8.5E-13 1.8E-17 125.0 13.6 123 113-240 21-145 (198)
32 PRK01683 trans-aconitate 2-met 99.4 9.1E-13 2E-17 128.2 13.3 110 122-241 22-131 (258)
33 PRK11207 tellurite resistance 99.4 9.9E-13 2.2E-17 125.0 13.0 103 129-238 28-132 (197)
34 PRK10258 biotin biosynthesis p 99.4 1.1E-12 2.3E-17 127.5 13.3 120 110-240 21-140 (251)
35 TIGR00477 tehB tellurite resis 99.4 9.2E-13 2E-17 125.1 12.0 106 126-239 25-132 (195)
36 PRK08317 hypothetical protein; 99.4 1.4E-12 3E-17 122.1 12.8 112 126-241 14-125 (241)
37 smart00828 PKS_MT Methyltransf 99.4 8.1E-13 1.8E-17 125.6 11.3 104 133-240 1-104 (224)
38 PLN02336 phosphoethanolamine N 99.4 2E-12 4.4E-17 136.9 14.2 114 121-240 256-369 (475)
39 PRK04457 spermidine synthase; 99.4 1.3E-12 2.9E-17 130.2 11.9 149 130-283 65-219 (262)
40 PRK08287 cobalt-precorrin-6Y C 99.4 3.5E-12 7.5E-17 119.3 13.8 117 115-240 14-131 (187)
41 PF13649 Methyltransf_25: Meth 99.4 9.5E-13 2.1E-17 111.2 8.9 96 135-234 1-101 (101)
42 PRK07402 precorrin-6B methylas 99.4 3.7E-12 8E-17 120.1 13.6 121 113-241 21-143 (196)
43 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 9.4E-12 2E-16 116.2 15.7 106 129-240 37-143 (223)
44 KOG1663 O-methyltransferase [S 99.4 2.7E-12 5.8E-17 127.2 11.7 117 120-241 62-184 (237)
45 COG2227 UbiG 2-polyprenyl-3-me 99.4 1.3E-12 2.8E-17 130.1 8.8 105 130-241 58-162 (243)
46 TIGR02072 BioC biotin biosynth 99.4 6.8E-12 1.5E-16 117.9 12.7 103 130-240 33-135 (240)
47 PF13659 Methyltransf_26: Meth 99.4 4.9E-12 1.1E-16 107.9 10.6 104 132-239 1-114 (117)
48 COG2242 CobL Precorrin-6B meth 99.4 1.1E-11 2.5E-16 119.5 13.9 120 113-240 15-135 (187)
49 TIGR02716 C20_methyl_CrtF C-20 99.3 1.1E-11 2.3E-16 124.6 13.7 112 123-240 141-254 (306)
50 PRK00121 trmB tRNA (guanine-N( 99.3 5.3E-12 1.2E-16 120.6 10.3 108 130-241 39-157 (202)
51 COG2230 Cfa Cyclopropane fatty 99.3 1.1E-11 2.4E-16 126.1 12.5 128 107-241 44-177 (283)
52 PRK12335 tellurite resistance 99.3 1.1E-11 2.5E-16 124.0 12.3 101 130-238 119-221 (287)
53 PRK00312 pcm protein-L-isoaspa 99.3 2.6E-11 5.7E-16 115.4 13.6 108 121-240 68-175 (212)
54 PF01135 PCMT: Protein-L-isoas 99.3 7.8E-12 1.7E-16 121.8 10.1 111 120-239 61-171 (209)
55 PRK15068 tRNA mo(5)U34 methylt 99.3 2.6E-11 5.6E-16 124.4 14.3 116 120-240 111-226 (322)
56 PRK06922 hypothetical protein; 99.3 2.4E-11 5.1E-16 135.1 14.9 109 128-241 415-538 (677)
57 PF08242 Methyltransf_12: Meth 99.3 1.3E-12 2.9E-17 109.3 3.5 97 136-236 1-99 (99)
58 KOG1540 Ubiquinone biosynthesi 99.3 2E-11 4.4E-16 122.9 12.4 109 129-240 98-214 (296)
59 TIGR00091 tRNA (guanine-N(7)-) 99.3 1.9E-11 4.2E-16 115.8 11.0 108 130-241 15-133 (194)
60 COG2518 Pcm Protein-L-isoaspar 99.3 2.3E-11 5E-16 119.2 10.9 108 120-239 61-168 (209)
61 PRK04266 fibrillarin; Provisio 99.3 8.7E-11 1.9E-15 115.4 14.7 105 127-239 68-175 (226)
62 COG2519 GCD14 tRNA(1-methylade 99.3 5.3E-11 1.1E-15 119.5 13.3 152 120-281 83-252 (256)
63 PRK05134 bifunctional 3-demeth 99.3 5.8E-11 1.2E-15 113.8 13.0 124 110-240 27-151 (233)
64 TIGR03840 TMPT_Se_Te thiopurin 99.3 8.5E-11 1.8E-15 114.3 14.2 106 130-239 33-151 (213)
65 PRK13943 protein-L-isoaspartat 99.3 6.7E-11 1.5E-15 122.1 13.9 107 125-240 74-180 (322)
66 PLN02490 MPBQ/MSBQ methyltrans 99.3 2.9E-11 6.2E-16 125.7 11.2 104 130-240 112-215 (340)
67 PF13489 Methyltransf_23: Meth 99.2 4.4E-11 9.5E-16 105.9 10.6 98 129-242 20-117 (161)
68 smart00138 MeTrc Methyltransfe 99.2 6E-11 1.3E-15 118.4 12.1 114 130-243 98-245 (264)
69 PF05175 MTS: Methyltransferas 99.2 8.8E-11 1.9E-15 109.2 12.2 104 130-238 30-138 (170)
70 TIGR02021 BchM-ChlM magnesium 99.2 1.3E-10 2.8E-15 111.0 13.5 103 129-239 53-157 (219)
71 TIGR03438 probable methyltrans 99.2 2.9E-10 6.3E-15 115.1 16.2 123 116-240 43-177 (301)
72 PRK11705 cyclopropane fatty ac 99.2 1.1E-10 2.4E-15 122.6 13.4 123 107-240 140-267 (383)
73 PRK00517 prmA ribosomal protei 99.2 1.5E-10 3.2E-15 114.0 13.4 110 113-239 103-212 (250)
74 TIGR03533 L3_gln_methyl protei 99.2 1.2E-10 2.6E-15 117.5 12.9 108 130-241 120-252 (284)
75 TIGR00406 prmA ribosomal prote 99.2 1.2E-10 2.7E-15 117.2 12.7 102 130-240 158-259 (288)
76 TIGR00537 hemK_rel_arch HemK-r 99.2 1.9E-10 4.2E-15 106.8 12.5 103 129-240 17-140 (179)
77 PRK13255 thiopurine S-methyltr 99.2 2.2E-10 4.7E-15 111.9 13.3 105 130-238 36-153 (218)
78 PRK00811 spermidine synthase; 99.2 1.3E-10 2.7E-15 117.2 12.1 110 130-241 75-192 (283)
79 TIGR03587 Pse_Me-ase pseudamin 99.2 2.3E-10 4.9E-15 110.4 13.0 113 114-238 25-140 (204)
80 cd02440 AdoMet_MTases S-adenos 99.2 2.4E-10 5.2E-15 90.2 10.7 101 134-239 1-103 (107)
81 PRK11088 rrmA 23S rRNA methylt 99.2 2.2E-10 4.8E-15 113.7 13.0 107 130-251 84-197 (272)
82 TIGR00563 rsmB ribosomal RNA s 99.2 2.2E-10 4.8E-15 121.1 13.5 112 126-240 233-368 (426)
83 TIGR00452 methyltransferase, p 99.2 6.1E-10 1.3E-14 114.6 16.1 115 121-240 111-225 (314)
84 PF08704 GCD14: tRNA methyltra 99.2 2.4E-10 5.3E-15 114.3 12.7 117 118-241 27-147 (247)
85 PRK07580 Mg-protoporphyrin IX 99.2 3.1E-10 6.7E-15 107.7 12.8 101 130-238 62-164 (230)
86 PRK14901 16S rRNA methyltransf 99.2 1.6E-10 3.5E-15 122.5 12.1 112 126-240 247-384 (434)
87 KOG1270 Methyltransferases [Co 99.2 3.7E-11 8.1E-16 121.3 6.7 102 132-240 90-195 (282)
88 PLN02366 spermidine synthase 99.2 2.5E-10 5.4E-15 117.2 12.4 110 130-241 90-207 (308)
89 PRK14902 16S rRNA methyltransf 99.2 2E-10 4.4E-15 121.8 11.9 121 117-240 235-379 (444)
90 TIGR00446 nop2p NOL1/NOP2/sun 99.2 2.3E-10 4.9E-15 114.0 11.5 111 127-240 67-199 (264)
91 PRK14903 16S rRNA methyltransf 99.2 3.7E-10 8E-15 120.2 13.8 112 126-240 232-366 (431)
92 PRK05785 hypothetical protein; 99.1 1.9E-10 4.2E-15 112.1 10.6 91 131-234 51-141 (226)
93 PRK14904 16S rRNA methyltransf 99.1 3.3E-10 7.1E-15 120.5 12.8 110 127-240 246-377 (445)
94 PRK11805 N5-glutamine S-adenos 99.1 3.4E-10 7.3E-15 115.7 12.4 106 132-241 134-264 (307)
95 PLN02336 phosphoethanolamine N 99.1 3.1E-10 6.7E-15 120.4 12.4 112 121-240 27-142 (475)
96 COG4106 Tam Trans-aconitate me 99.1 1.6E-10 3.6E-15 114.4 9.1 107 125-241 24-130 (257)
97 PRK14968 putative methyltransf 99.1 1E-09 2.2E-14 100.5 13.7 104 130-239 22-147 (188)
98 TIGR01983 UbiG ubiquinone bios 99.1 4.4E-10 9.5E-15 106.5 11.4 104 131-240 45-149 (224)
99 TIGR01177 conserved hypothetic 99.1 6E-10 1.3E-14 113.9 13.0 109 127-241 178-295 (329)
100 PRK10901 16S rRNA methyltransf 99.1 9.3E-10 2E-14 116.5 14.8 110 126-240 239-372 (427)
101 PF03848 TehB: Tellurite resis 99.1 7.5E-10 1.6E-14 107.2 12.9 107 127-241 26-134 (192)
102 TIGR00536 hemK_fam HemK family 99.1 1.1E-09 2.4E-14 109.8 14.4 106 132-241 115-245 (284)
103 TIGR03534 RF_mod_PrmC protein- 99.1 8E-10 1.7E-14 106.0 12.2 106 130-240 86-217 (251)
104 PRK15001 SAM-dependent 23S rib 99.1 9.9E-10 2.1E-14 115.8 13.8 114 122-239 219-339 (378)
105 PRK01544 bifunctional N5-gluta 99.1 1.2E-09 2.6E-14 118.7 14.6 106 131-240 138-269 (506)
106 PRK01581 speE spermidine synth 99.1 7.1E-10 1.5E-14 116.7 11.8 111 129-241 148-269 (374)
107 TIGR00438 rrmJ cell division p 99.1 9.1E-10 2E-14 103.3 11.2 102 124-239 25-145 (188)
108 PRK06202 hypothetical protein; 99.1 2.1E-09 4.7E-14 103.7 13.6 102 130-238 59-165 (232)
109 PRK14967 putative methyltransf 99.1 2.3E-09 4.9E-14 103.5 13.2 104 129-239 34-158 (223)
110 PRK14121 tRNA (guanine-N(7)-)- 99.0 1.8E-09 3.9E-14 114.3 13.4 108 130-241 121-236 (390)
111 COG4123 Predicted O-methyltran 99.0 1.4E-09 3E-14 109.2 11.6 116 122-240 35-170 (248)
112 PF06325 PrmA: Ribosomal prote 99.0 2.5E-09 5.4E-14 109.5 13.5 137 116-268 148-285 (295)
113 PRK11188 rrmJ 23S rRNA methylt 99.0 2.5E-09 5.4E-14 103.4 12.8 124 129-269 49-192 (209)
114 PRK09328 N5-glutamine S-adenos 99.0 2.9E-09 6.4E-14 104.1 13.2 107 129-240 106-238 (275)
115 TIGR00417 speE spermidine synt 99.0 4E-09 8.6E-14 105.3 13.7 110 130-241 71-187 (270)
116 PRK15128 23S rRNA m(5)C1962 me 99.0 1.4E-09 3E-14 115.1 10.9 108 130-241 219-340 (396)
117 COG2264 PrmA Ribosomal protein 99.0 4.3E-09 9.4E-14 108.2 12.9 141 116-269 149-291 (300)
118 PRK09489 rsmC 16S ribosomal RN 99.0 6E-09 1.3E-13 108.3 13.8 103 130-239 195-302 (342)
119 PRK11783 rlmL 23S rRNA m(2)G24 99.0 2.3E-09 5.1E-14 120.3 10.8 107 130-240 537-656 (702)
120 PRK13256 thiopurine S-methyltr 99.0 9.1E-09 2E-13 101.9 13.7 105 130-240 42-163 (226)
121 PF05401 NodS: Nodulation prot 99.0 9.5E-09 2E-13 100.4 13.2 103 130-241 42-147 (201)
122 TIGR03704 PrmC_rel_meth putati 99.0 3.9E-09 8.4E-14 104.8 10.7 128 131-269 86-243 (251)
123 PRK14966 unknown domain/N5-glu 98.9 9.5E-09 2.1E-13 109.9 13.3 107 129-240 249-381 (423)
124 PLN02585 magnesium protoporphy 98.9 3.2E-08 7E-13 102.1 14.8 121 111-240 125-250 (315)
125 PLN02823 spermine synthase 98.9 1.9E-08 4.1E-13 104.6 13.2 109 130-240 102-220 (336)
126 PF05724 TPMT: Thiopurine S-me 98.9 2.1E-08 4.5E-13 98.4 12.7 134 88-236 5-151 (218)
127 KOG4300 Predicted methyltransf 98.9 1.2E-08 2.6E-13 100.8 11.0 109 126-240 71-182 (252)
128 smart00650 rADc Ribosomal RNA 98.9 2.1E-08 4.6E-13 92.7 11.8 104 127-241 9-114 (169)
129 PTZ00146 fibrillarin; Provisio 98.9 1.9E-08 4.1E-13 103.2 12.5 143 128-280 129-286 (293)
130 PF01564 Spermine_synth: Sperm 98.9 2.5E-08 5.4E-13 99.2 12.7 109 130-240 75-191 (246)
131 PRK03522 rumB 23S rRNA methylu 98.9 2.8E-08 6E-13 101.3 13.2 135 130-280 172-314 (315)
132 PLN02232 ubiquinone biosynthes 98.8 6.7E-09 1.5E-13 96.1 7.8 80 161-241 1-82 (160)
133 COG2890 HemK Methylase of poly 98.8 6.9E-08 1.5E-12 97.9 15.7 102 134-241 113-239 (280)
134 PRK03612 spermidine synthase; 98.8 1E-08 2.3E-13 111.6 10.5 110 130-241 296-416 (521)
135 PRK10909 rsmD 16S rRNA m(2)G96 98.8 2.9E-08 6.3E-13 96.2 12.1 124 112-241 33-160 (199)
136 COG0421 SpeE Spermidine syntha 98.8 3E-08 6.5E-13 101.1 12.5 110 130-241 75-191 (282)
137 PRK13168 rumA 23S rRNA m(5)U19 98.8 5.6E-08 1.2E-12 103.5 14.4 145 122-280 288-442 (443)
138 TIGR00479 rumA 23S rRNA (uraci 98.8 6.8E-08 1.5E-12 102.0 13.2 105 124-238 285-394 (431)
139 PF13578 Methyltransf_24: Meth 98.8 3.9E-09 8.4E-14 90.0 2.9 101 136-240 1-105 (106)
140 KOG1271 Methyltransferases [Ge 98.8 2.2E-08 4.7E-13 97.6 8.3 107 131-240 67-181 (227)
141 TIGR02081 metW methionine bios 98.7 5E-08 1.1E-12 92.0 10.0 100 120-233 4-105 (194)
142 PF08003 Methyltransf_9: Prote 98.7 1.5E-07 3.3E-12 97.2 13.4 116 120-240 104-219 (315)
143 COG2813 RsmC 16S RNA G1207 met 98.7 1.6E-07 3.4E-12 96.8 12.7 113 121-239 148-265 (300)
144 TIGR02085 meth_trns_rumB 23S r 98.7 1.9E-07 4.2E-12 97.7 13.6 100 130-238 232-332 (374)
145 PF00891 Methyltransf_2: O-met 98.7 2E-07 4.2E-12 90.5 12.5 103 124-240 93-199 (241)
146 PF02527 GidB: rRNA small subu 98.7 1.8E-07 3.9E-12 89.9 11.8 98 134-240 51-148 (184)
147 PRK11933 yebU rRNA (cytosine-C 98.6 1.8E-07 4E-12 101.3 12.1 135 103-240 82-242 (470)
148 PLN02672 methionine S-methyltr 98.6 2.4E-07 5.2E-12 108.6 12.5 108 132-241 119-279 (1082)
149 TIGR00095 RNA methyltransferas 98.6 5.1E-07 1.1E-11 86.4 12.3 108 130-242 48-161 (189)
150 PF02390 Methyltransf_4: Putat 98.6 3.3E-07 7.1E-12 88.3 10.5 107 132-242 18-135 (195)
151 PF02475 Met_10: Met-10+ like- 98.5 4.7E-07 1E-11 88.3 10.3 111 117-237 89-199 (200)
152 PF12147 Methyltransf_20: Puta 98.5 1.4E-06 3.1E-11 89.8 13.8 160 113-280 120-311 (311)
153 PRK11727 23S rRNA mA1618 methy 98.5 3.6E-07 7.8E-12 94.8 9.6 77 131-210 114-196 (321)
154 PF05185 PRMT5: PRMT5 arginine 98.5 8E-07 1.7E-11 95.9 11.8 131 108-240 162-297 (448)
155 COG0220 Predicted S-adenosylme 98.5 9.9E-07 2.1E-11 87.6 11.1 106 132-241 49-165 (227)
156 PF09445 Methyltransf_15: RNA 98.5 3.2E-07 7E-12 87.1 7.0 74 133-211 1-77 (163)
157 COG2263 Predicted RNA methylas 98.4 2.5E-06 5.5E-11 83.3 12.0 79 128-215 42-120 (198)
158 PF06080 DUF938: Protein of un 98.4 2.3E-06 5E-11 84.1 11.5 117 121-241 16-142 (204)
159 COG0357 GidB Predicted S-adeno 98.4 1E-06 2.2E-11 87.1 9.0 99 132-238 68-166 (215)
160 PF10294 Methyltransf_16: Puta 98.4 2E-06 4.3E-11 81.1 10.2 108 130-240 44-156 (173)
161 PF07021 MetW: Methionine bios 98.4 1.2E-06 2.6E-11 85.5 8.7 99 129-240 11-111 (193)
162 PRK05031 tRNA (uracil-5-)-meth 98.4 1.7E-06 3.7E-11 90.4 10.3 95 132-238 207-318 (362)
163 TIGR02143 trmA_only tRNA (urac 98.4 1.9E-06 4E-11 89.9 10.4 95 132-238 198-309 (353)
164 PRK04338 N(2),N(2)-dimethylgua 98.4 2.1E-06 4.5E-11 90.9 10.7 101 132-240 58-158 (382)
165 PTZ00338 dimethyladenosine tra 98.4 2E-06 4.3E-11 88.1 10.2 77 127-210 32-108 (294)
166 KOG1269 SAM-dependent methyltr 98.4 1.1E-06 2.5E-11 92.6 8.5 159 70-241 57-216 (364)
167 PHA03411 putative methyltransf 98.3 1.9E-06 4.2E-11 88.1 9.7 100 130-239 63-182 (279)
168 COG2521 Predicted archaeal met 98.3 6.3E-07 1.4E-11 90.2 5.9 133 129-266 132-277 (287)
169 KOG3010 Methyltransferase [Gen 98.3 9E-07 2E-11 89.1 7.0 117 130-253 31-149 (261)
170 COG1092 Predicted SAM-dependen 98.3 2.2E-06 4.8E-11 91.3 10.1 109 130-242 216-338 (393)
171 PRK14896 ksgA 16S ribosomal RN 98.3 2.5E-06 5.4E-11 84.9 9.9 74 127-210 25-98 (258)
172 PRK00536 speE spermidine synth 98.3 3.8E-06 8.2E-11 85.2 11.1 100 130-241 71-172 (262)
173 PRK10611 chemotaxis methyltran 98.3 3.1E-06 6.7E-11 86.7 10.5 111 131-241 115-263 (287)
174 KOG2899 Predicted methyltransf 98.3 2.6E-06 5.6E-11 86.2 9.2 108 130-239 57-208 (288)
175 PF03291 Pox_MCEL: mRNA cappin 98.3 3.4E-06 7.3E-11 87.9 10.4 110 131-243 62-189 (331)
176 PRK04148 hypothetical protein; 98.3 9.9E-06 2.1E-10 75.0 12.0 93 130-240 15-109 (134)
177 KOG1661 Protein-L-isoaspartate 98.3 3E-06 6.6E-11 84.1 9.0 104 129-239 80-192 (237)
178 PRK00274 ksgA 16S ribosomal RN 98.2 3.6E-06 7.8E-11 84.4 8.9 75 126-209 37-111 (272)
179 KOG2915 tRNA(1-methyladenosine 98.2 9.9E-06 2.1E-10 83.1 11.9 112 120-238 94-208 (314)
180 PF01170 UPF0020: Putative RNA 98.2 1.1E-05 2.5E-10 76.5 11.6 117 124-241 21-152 (179)
181 KOG2904 Predicted methyltransf 98.2 1.8E-05 3.8E-10 81.5 12.9 77 130-209 147-228 (328)
182 TIGR00755 ksgA dimethyladenosi 98.2 1.6E-05 3.4E-10 78.6 12.2 69 127-205 25-93 (253)
183 PHA03412 putative methyltransf 98.2 1.1E-05 2.3E-10 81.3 10.6 97 131-236 49-159 (241)
184 PF05958 tRNA_U5-meth_tr: tRNA 98.2 9.7E-06 2.1E-10 84.6 10.6 96 108-210 174-285 (352)
185 PF10672 Methyltrans_SAM: S-ad 98.2 1.7E-05 3.7E-10 81.4 11.9 106 130-240 122-238 (286)
186 KOG1541 Predicted protein carb 98.2 1.1E-05 2.4E-10 80.9 10.0 120 130-269 49-191 (270)
187 PF07091 FmrO: Ribosomal RNA m 98.1 7.7E-06 1.7E-10 82.7 8.4 176 38-237 28-206 (251)
188 PF03602 Cons_hypoth95: Conser 98.1 9E-06 2E-10 77.9 8.2 126 111-241 20-154 (183)
189 PF01739 CheR: CheR methyltran 98.1 6.8E-06 1.5E-10 79.8 7.3 114 130-243 30-178 (196)
190 PF08123 DOT1: Histone methyla 98.1 2.5E-05 5.3E-10 76.5 10.9 124 111-238 22-156 (205)
191 PRK00050 16S rRNA m(4)C1402 me 98.1 1.1E-05 2.5E-10 83.0 8.9 80 129-213 17-100 (296)
192 COG0500 SmtA SAM-dependent met 98.1 7.2E-05 1.6E-09 58.9 11.3 102 135-241 52-156 (257)
193 KOG1499 Protein arginine N-met 98.1 2.4E-05 5.1E-10 82.2 10.9 104 129-238 58-165 (346)
194 PF04816 DUF633: Family of unk 98.1 4.9E-05 1.1E-09 74.4 12.3 136 135-282 1-141 (205)
195 KOG2361 Predicted methyltransf 98.1 1.4E-05 3.1E-10 80.7 8.6 120 115-241 56-184 (264)
196 COG2265 TrmA SAM-dependent met 98.0 4.4E-05 9.5E-10 82.3 12.8 107 120-236 282-392 (432)
197 COG0144 Sun tRNA and rRNA cyto 98.0 5.4E-05 1.2E-09 79.4 12.9 113 126-240 151-288 (355)
198 TIGR00478 tly hemolysin TlyA f 98.0 3.1E-05 6.6E-10 77.0 10.4 93 130-238 74-169 (228)
199 COG1352 CheR Methylase of chem 98.0 5.4E-05 1.2E-09 77.2 12.2 136 107-242 70-243 (268)
200 COG1041 Predicted DNA modifica 98.0 0.0001 2.2E-09 77.7 14.4 157 107-280 174-346 (347)
201 COG2520 Predicted methyltransf 98.0 4.2E-05 9E-10 80.4 11.6 112 118-240 177-289 (341)
202 TIGR00308 TRM1 tRNA(guanine-26 98.0 4.3E-05 9.4E-10 80.9 10.6 101 133-241 46-148 (374)
203 PRK01544 bifunctional N5-gluta 97.9 8.6E-05 1.9E-09 81.2 11.0 109 130-242 346-464 (506)
204 KOG3420 Predicted RNA methylas 97.8 4E-05 8.7E-10 72.9 6.7 79 130-214 47-125 (185)
205 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.8 0.00013 2.7E-09 74.1 10.6 134 130-266 55-239 (256)
206 PF01728 FtsJ: FtsJ-like methy 97.8 3.7E-05 8E-10 71.6 5.9 99 131-243 23-142 (181)
207 KOG2730 Methylase [General fun 97.8 1.4E-05 3E-10 80.1 3.0 104 131-240 94-202 (263)
208 COG0116 Predicted N6-adenine-s 97.8 5.7E-05 1.2E-09 80.4 7.8 120 120-240 180-344 (381)
209 PF04989 CmcI: Cephalosporin h 97.8 6.3E-05 1.4E-09 74.2 7.3 106 130-240 31-147 (206)
210 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.7 0.00019 4.1E-09 73.0 10.8 135 103-240 56-219 (283)
211 COG4976 Predicted methyltransf 97.7 1.7E-05 3.7E-10 80.0 3.1 100 130-241 124-226 (287)
212 PRK11783 rlmL 23S rRNA m(2)G24 97.7 0.00016 3.5E-09 81.9 11.1 83 158-241 257-348 (702)
213 KOG1500 Protein arginine N-met 97.7 0.00025 5.4E-09 75.0 11.3 125 107-237 141-279 (517)
214 PF05891 Methyltransf_PK: AdoM 97.7 0.00012 2.6E-09 72.9 8.4 105 131-240 55-161 (218)
215 COG0742 N6-adenine-specific me 97.7 0.00057 1.2E-08 66.7 12.6 125 111-241 21-155 (187)
216 PF04672 Methyltransf_19: S-ad 97.7 0.00019 4E-09 73.4 9.7 107 131-240 68-190 (267)
217 COG4262 Predicted spermidine s 97.7 0.00049 1.1E-08 73.4 12.7 148 130-281 288-452 (508)
218 PRK09424 pntA NAD(P) transhydr 97.6 0.00025 5.4E-09 78.1 10.0 102 129-241 162-286 (509)
219 COG1063 Tdh Threonine dehydrog 97.6 0.00023 4.9E-09 73.9 9.1 102 130-243 167-272 (350)
220 COG0030 KsgA Dimethyladenosine 97.6 0.00029 6.3E-09 71.7 9.3 83 120-210 19-102 (259)
221 KOG1975 mRNA cap methyltransfe 97.6 0.00047 1E-08 72.5 10.8 109 130-241 116-238 (389)
222 PF05971 Methyltransf_10: Prot 97.5 0.00031 6.7E-09 72.8 8.5 76 132-210 103-184 (299)
223 PF09243 Rsm22: Mitochondrial 97.5 0.00068 1.5E-08 68.7 10.8 105 130-239 32-139 (274)
224 PF07279 DUF1442: Protein of u 97.5 0.0013 2.7E-08 65.7 11.8 109 128-241 38-150 (218)
225 COG4076 Predicted RNA methylas 97.4 0.00085 1.8E-08 66.5 9.7 101 130-238 31-133 (252)
226 TIGR03439 methyl_EasF probable 97.4 0.0019 4.1E-08 67.5 12.7 165 115-281 55-264 (319)
227 PRK10742 putative methyltransf 97.4 0.00066 1.4E-08 68.9 9.0 89 121-213 76-174 (250)
228 PRK09880 L-idonate 5-dehydroge 97.4 0.00059 1.3E-08 69.2 8.7 99 129-240 167-266 (343)
229 COG2384 Predicted SAM-dependen 97.4 0.0022 4.9E-08 64.2 12.4 138 130-282 15-160 (226)
230 TIGR01444 fkbM_fam methyltrans 97.4 0.00055 1.2E-08 60.7 7.4 59 134-196 1-59 (143)
231 COG0293 FtsJ 23S rRNA methylas 97.3 0.0042 9E-08 61.6 13.6 135 129-280 43-200 (205)
232 COG3963 Phospholipid N-methylt 97.3 0.0022 4.7E-08 62.4 11.1 106 128-241 45-157 (194)
233 PF13679 Methyltransf_32: Meth 97.3 0.0036 7.8E-08 57.0 11.8 66 130-196 24-93 (141)
234 PRK11760 putative 23S rRNA C24 97.2 0.0013 2.8E-08 69.7 9.5 88 129-233 209-296 (357)
235 TIGR00561 pntA NAD(P) transhyd 97.2 0.00063 1.4E-08 75.1 7.0 98 130-238 162-282 (511)
236 PF05219 DREV: DREV methyltran 97.2 0.002 4.3E-08 66.0 9.6 95 131-240 94-188 (265)
237 KOG0820 Ribosomal RNA adenine 97.2 0.002 4.3E-08 66.7 9.5 82 121-209 48-129 (315)
238 KOG1709 Guanidinoacetate methy 97.1 0.0038 8.2E-08 63.0 10.9 116 130-251 100-218 (271)
239 cd00401 AdoHcyase S-adenosyl-L 97.1 0.0021 4.4E-08 69.4 9.7 110 109-240 178-289 (413)
240 PF02384 N6_Mtase: N-6 DNA Met 97.1 0.0033 7.1E-08 63.5 10.6 115 128-243 43-186 (311)
241 PF05148 Methyltransf_8: Hypot 97.1 0.0015 3.3E-08 65.1 8.0 109 130-264 71-183 (219)
242 KOG3191 Predicted N6-DNA-methy 97.1 0.0037 7.9E-08 61.6 10.0 106 130-240 42-168 (209)
243 KOG0024 Sorbitol dehydrogenase 97.0 0.0042 9.2E-08 65.5 10.6 113 128-254 166-286 (354)
244 cd08237 ribitol-5-phosphate_DH 97.0 0.0028 6.1E-08 64.7 8.7 96 129-240 161-256 (341)
245 PF00398 RrnaAD: Ribosomal RNA 96.9 0.0051 1.1E-07 61.6 9.9 110 121-240 20-134 (262)
246 COG3897 Predicted methyltransf 96.9 0.0028 6E-08 62.9 7.6 104 130-242 78-181 (218)
247 TIGR00006 S-adenosyl-methyltra 96.9 0.0042 9E-08 64.7 9.2 80 129-213 18-102 (305)
248 COG1064 AdhP Zn-dependent alco 96.9 0.0031 6.6E-08 66.6 7.9 99 127-242 162-261 (339)
249 cd08230 glucose_DH Glucose deh 96.8 0.0048 1E-07 62.8 8.8 97 129-240 170-269 (355)
250 PF06962 rRNA_methylase: Putat 96.8 0.0079 1.7E-07 56.4 9.2 84 159-243 1-95 (140)
251 TIGR02987 met_A_Alw26 type II 96.8 0.0042 9.2E-08 67.8 8.6 77 131-210 31-119 (524)
252 KOG3178 Hydroxyindole-O-methyl 96.7 0.031 6.7E-07 59.3 13.5 160 68-240 99-275 (342)
253 cd08281 liver_ADH_like1 Zinc-d 96.7 0.0066 1.4E-07 62.5 8.5 101 127-240 187-290 (371)
254 KOG2187 tRNA uracil-5-methyltr 96.6 0.003 6.5E-08 69.7 6.1 117 107-232 359-482 (534)
255 PRK05808 3-hydroxybutyryl-CoA 96.6 0.01 2.2E-07 59.5 9.3 100 133-240 4-118 (282)
256 PLN02740 Alcohol dehydrogenase 96.6 0.011 2.4E-07 61.3 9.8 101 127-240 194-300 (381)
257 TIGR03451 mycoS_dep_FDH mycoth 96.5 0.0086 1.9E-07 61.2 8.4 101 127-240 172-276 (358)
258 TIGR02822 adh_fam_2 zinc-bindi 96.5 0.012 2.6E-07 59.9 9.4 94 127-240 161-254 (329)
259 PF01861 DUF43: Protein of unk 96.5 0.019 4.2E-07 58.3 10.3 98 130-234 43-142 (243)
260 PRK06035 3-hydroxyacyl-CoA deh 96.4 0.015 3.2E-07 58.7 9.1 99 133-239 4-120 (291)
261 KOG1562 Spermidine synthase [A 96.3 0.013 2.9E-07 61.3 8.3 136 94-240 93-236 (337)
262 PRK07530 3-hydroxybutyryl-CoA 96.3 0.026 5.7E-07 56.8 10.2 101 132-240 4-119 (292)
263 PF02737 3HCDH_N: 3-hydroxyacy 96.3 0.015 3.2E-07 55.5 7.9 99 134-241 1-115 (180)
264 TIGR01202 bchC 2-desacetyl-2-h 96.3 0.015 3.2E-07 58.6 8.2 88 130-240 143-231 (308)
265 TIGR03366 HpnZ_proposed putati 96.3 0.012 2.6E-07 58.3 7.4 98 129-240 118-218 (280)
266 PRK07066 3-hydroxybutyryl-CoA 96.3 0.019 4.1E-07 60.0 9.1 102 132-241 7-120 (321)
267 PF01269 Fibrillarin: Fibrilla 96.3 0.062 1.3E-06 54.3 12.3 144 127-279 69-226 (229)
268 cd08254 hydroxyacyl_CoA_DH 6-h 96.2 0.02 4.2E-07 56.6 8.5 101 127-240 161-263 (338)
269 PLN02586 probable cinnamyl alc 96.2 0.031 6.6E-07 57.8 10.3 98 129-240 181-278 (360)
270 cd08239 THR_DH_like L-threonin 96.2 0.013 2.9E-07 58.8 7.4 100 128-240 160-262 (339)
271 TIGR02818 adh_III_F_hyde S-(hy 96.2 0.032 6.9E-07 57.6 10.0 99 127-240 181-287 (368)
272 PF02005 TRM: N2,N2-dimethylgu 96.1 0.024 5.1E-07 60.6 9.2 107 131-243 49-157 (377)
273 TIGR03201 dearomat_had 6-hydro 96.1 0.017 3.7E-07 58.9 7.7 101 127-240 162-272 (349)
274 PF07942 N2227: N2227-like pro 96.1 0.084 1.8E-06 54.4 12.6 107 130-240 55-202 (270)
275 PRK05476 S-adenosyl-L-homocyst 96.1 0.031 6.7E-07 60.7 9.9 111 108-240 187-299 (425)
276 PF03721 UDPG_MGDP_dh_N: UDP-g 96.1 0.016 3.6E-07 55.6 7.0 101 133-241 1-121 (185)
277 PRK06130 3-hydroxybutyryl-CoA 96.0 0.037 8E-07 56.0 9.7 103 131-240 3-115 (311)
278 KOG2352 Predicted spermine/spe 96.0 0.052 1.1E-06 59.8 11.2 103 130-240 46-161 (482)
279 PRK07819 3-hydroxybutyryl-CoA 96.0 0.053 1.2E-06 55.2 10.5 100 133-241 6-122 (286)
280 cd05188 MDR Medium chain reduc 96.0 0.033 7.1E-07 52.6 8.5 101 128-241 131-233 (271)
281 TIGR00518 alaDH alanine dehydr 95.9 0.013 2.9E-07 61.9 6.2 101 131-240 166-267 (370)
282 PLN02827 Alcohol dehydrogenase 95.9 0.03 6.5E-07 58.4 8.5 100 127-239 189-294 (378)
283 PRK08293 3-hydroxybutyryl-CoA 95.9 0.015 3.2E-07 58.7 6.0 101 133-240 4-120 (287)
284 PF04445 SAM_MT: Putative SAM- 95.9 0.018 3.8E-07 58.2 6.5 90 120-213 62-161 (234)
285 PLN02545 3-hydroxybutyryl-CoA 95.9 0.051 1.1E-06 54.8 9.9 101 132-240 4-119 (295)
286 TIGR00936 ahcY adenosylhomocys 95.9 0.042 9.2E-07 59.4 9.6 109 110-240 172-282 (406)
287 KOG3045 Predicted RNA methylas 95.9 0.02 4.4E-07 59.2 6.8 86 130-241 179-265 (325)
288 PRK07502 cyclohexadienyl dehyd 95.9 0.042 9.2E-07 55.8 9.2 92 132-237 6-97 (307)
289 PRK10309 galactitol-1-phosphat 95.8 0.028 6.1E-07 56.9 7.7 101 128-240 157-260 (347)
290 cd08300 alcohol_DH_class_III c 95.8 0.063 1.4E-06 55.3 10.3 101 127-240 182-288 (368)
291 cd05213 NAD_bind_Glutamyl_tRNA 95.8 0.99 2.2E-05 46.6 18.9 98 130-241 176-273 (311)
292 cd08238 sorbose_phosphate_red 95.8 0.073 1.6E-06 56.0 10.9 103 128-239 172-287 (410)
293 PRK09260 3-hydroxybutyryl-CoA 95.7 0.035 7.7E-07 55.9 8.0 102 133-241 2-118 (288)
294 cd08277 liver_alcohol_DH_like 95.7 0.056 1.2E-06 55.6 9.5 99 127-240 180-286 (365)
295 cd08296 CAD_like Cinnamyl alco 95.7 0.058 1.3E-06 54.3 9.3 101 128-241 160-260 (333)
296 cd08301 alcohol_DH_plants Plan 95.7 0.072 1.6E-06 54.7 10.0 101 127-240 183-289 (369)
297 cd08283 FDH_like_1 Glutathione 95.7 0.084 1.8E-06 54.9 10.7 108 127-241 180-307 (386)
298 TIGR02825 B4_12hDH leukotriene 95.6 0.065 1.4E-06 53.7 9.5 101 126-240 133-237 (325)
299 PLN03154 putative allyl alcoho 95.5 0.066 1.4E-06 55.1 9.3 101 127-240 154-258 (348)
300 COG0686 Ald Alanine dehydrogen 95.5 0.04 8.7E-07 58.3 7.6 101 130-238 166-266 (371)
301 PLN02514 cinnamyl-alcohol dehy 95.5 0.11 2.4E-06 53.5 10.6 98 129-240 178-275 (357)
302 cd08294 leukotriene_B4_DH_like 95.4 0.071 1.5E-06 52.8 8.8 100 126-239 138-240 (329)
303 COG1889 NOP1 Fibrillarin-like 95.4 0.21 4.6E-06 50.2 11.9 142 127-279 72-228 (231)
304 PF05711 TylF: Macrocin-O-meth 95.4 0.11 2.4E-06 52.9 10.1 110 130-242 73-214 (248)
305 PLN02178 cinnamyl-alcohol dehy 95.4 0.072 1.6E-06 55.7 9.1 96 130-240 177-273 (375)
306 PF01795 Methyltransf_5: MraW 95.4 0.05 1.1E-06 57.0 7.8 80 129-213 18-103 (310)
307 cd08285 NADP_ADH NADP(H)-depen 95.3 0.059 1.3E-06 54.5 7.9 101 127-240 162-266 (351)
308 KOG2940 Predicted methyltransf 95.3 0.02 4.4E-07 58.5 4.4 103 131-240 72-174 (325)
309 PRK09422 ethanol-active dehydr 95.3 0.1 2.3E-06 52.0 9.4 102 127-240 158-261 (338)
310 PF03141 Methyltransf_29: Puta 95.2 0.021 4.6E-07 63.0 4.7 101 130-241 116-220 (506)
311 PRK07417 arogenate dehydrogena 95.2 0.092 2E-06 52.9 8.8 89 133-239 1-89 (279)
312 cd08233 butanediol_DH_like (2R 95.2 0.082 1.8E-06 53.5 8.5 102 127-241 168-273 (351)
313 COG5459 Predicted rRNA methyla 95.1 0.049 1.1E-06 58.5 6.9 107 130-240 112-225 (484)
314 KOG1331 Predicted methyltransf 95.1 0.022 4.7E-07 59.2 4.2 96 130-239 44-142 (293)
315 PRK08306 dipicolinate synthase 95.1 0.085 1.8E-06 54.2 8.2 89 131-238 151-239 (296)
316 PRK07531 bifunctional 3-hydrox 94.9 0.18 3.9E-06 55.3 10.8 103 132-243 4-118 (495)
317 PRK01747 mnmC bifunctional tRN 94.9 0.064 1.4E-06 60.3 7.5 111 130-241 56-207 (662)
318 COG0275 Predicted S-adenosylme 94.9 0.12 2.7E-06 54.2 8.9 82 129-214 21-107 (314)
319 cd08232 idonate-5-DH L-idonate 94.9 0.15 3.2E-06 51.1 9.2 96 131-239 165-261 (339)
320 COG1062 AdhC Zn-dependent alco 94.8 0.1 2.2E-06 55.7 8.2 103 127-240 181-285 (366)
321 cd08293 PTGR2 Prostaglandin re 94.7 0.15 3.3E-06 51.1 8.9 99 128-239 149-253 (345)
322 cd08255 2-desacetyl-2-hydroxye 94.7 0.18 3.9E-06 49.0 9.1 97 127-240 93-190 (277)
323 PRK06522 2-dehydropantoate 2-r 94.7 0.2 4.4E-06 49.8 9.6 95 133-238 1-98 (304)
324 PRK12921 2-dehydropantoate 2-r 94.7 0.11 2.4E-06 51.9 7.7 94 133-238 1-100 (305)
325 KOG3201 Uncharacterized conser 94.6 0.033 7.1E-07 54.4 3.7 109 130-241 28-141 (201)
326 TIGR02279 PaaC-3OHAcCoADH 3-hy 94.6 0.22 4.8E-06 55.0 10.6 102 130-240 3-120 (503)
327 PF02254 TrkA_N: TrkA-N domain 94.6 0.23 5E-06 42.6 8.6 93 135-241 1-97 (116)
328 KOG1122 tRNA and rRNA cytosine 94.6 0.27 5.8E-06 53.8 10.8 109 129-240 239-371 (460)
329 PF00107 ADH_zinc_N: Zinc-bind 94.6 0.02 4.3E-07 49.7 1.9 88 143-243 2-92 (130)
330 PLN02494 adenosylhomocysteinas 94.5 0.091 2E-06 58.0 7.3 111 109-240 230-341 (477)
331 COG0604 Qor NADPH:quinone redu 94.5 0.13 2.9E-06 53.3 8.2 106 122-241 133-242 (326)
332 cd08231 MDR_TM0436_like Hypoth 94.5 0.23 4.9E-06 50.6 9.6 97 130-240 176-280 (361)
333 TIGR02819 fdhA_non_GSH formald 94.5 0.16 3.5E-06 53.6 8.8 104 127-240 181-299 (393)
334 PRK05708 2-dehydropantoate 2-r 94.4 0.18 3.8E-06 51.7 8.8 95 133-238 3-102 (305)
335 cd08295 double_bond_reductase_ 94.4 0.21 4.6E-06 50.4 9.2 102 126-240 146-251 (338)
336 PF01262 AlaDh_PNT_C: Alanine 94.4 0.02 4.3E-07 53.6 1.7 100 130-237 18-136 (168)
337 PRK10083 putative oxidoreducta 94.3 0.28 6E-06 49.2 9.7 103 127-241 156-260 (339)
338 PRK06129 3-hydroxyacyl-CoA deh 94.3 0.33 7.1E-06 49.6 10.3 96 133-236 3-114 (308)
339 PRK08229 2-dehydropantoate 2-r 94.3 0.17 3.6E-06 51.7 8.1 96 133-238 3-105 (341)
340 PRK08507 prephenate dehydrogen 94.2 0.2 4.4E-06 50.2 8.5 88 133-237 1-88 (275)
341 KOG2352 Predicted spermine/spe 94.2 0.047 1E-06 60.1 4.3 107 130-240 294-416 (482)
342 cd08286 FDH_like_ADH2 formalde 94.2 0.26 5.7E-06 49.6 9.3 100 128-241 163-267 (345)
343 cd08298 CAD2 Cinnamyl alcohol 94.1 0.33 7.1E-06 48.3 9.8 94 127-240 163-256 (329)
344 TIGR02441 fa_ox_alpha_mit fatt 94.1 0.23 5E-06 57.4 9.6 101 132-241 335-451 (737)
345 PRK15182 Vi polysaccharide bio 94.0 0.45 9.8E-06 51.5 11.3 100 130-241 4-121 (425)
346 PLN02256 arogenate dehydrogena 94.0 0.27 5.8E-06 51.0 9.2 100 112-236 23-123 (304)
347 PRK08268 3-hydroxy-acyl-CoA de 94.0 0.12 2.7E-06 56.9 7.1 101 131-240 6-122 (507)
348 TIGR00872 gnd_rel 6-phosphoglu 93.9 0.23 5E-06 50.7 8.3 89 133-237 1-90 (298)
349 PRK00094 gpsA NAD(P)H-dependen 93.9 0.3 6.5E-06 49.2 9.0 98 133-239 2-104 (325)
350 cd05279 Zn_ADH1 Liver alcohol 93.9 0.32 6.9E-06 50.1 9.3 99 127-240 179-285 (365)
351 COG0287 TyrA Prephenate dehydr 93.8 0.23 5E-06 51.2 8.2 92 132-236 3-94 (279)
352 PRK11064 wecC UDP-N-acetyl-D-m 93.8 0.43 9.3E-06 51.3 10.5 94 133-241 4-120 (415)
353 cd08242 MDR_like Medium chain 93.8 0.41 9E-06 47.5 9.7 93 127-238 151-243 (319)
354 PRK05225 ketol-acid reductoiso 93.7 0.23 5.1E-06 54.9 8.4 92 130-243 34-132 (487)
355 cd08245 CAD Cinnamyl alcohol d 93.7 0.55 1.2E-05 46.8 10.4 98 128-240 159-256 (330)
356 cd05297 GH4_alpha_glucosidase_ 93.7 0.039 8.4E-07 59.3 2.4 100 134-236 2-116 (423)
357 PRK15057 UDP-glucose 6-dehydro 93.6 0.57 1.2E-05 50.2 10.9 101 133-241 1-118 (388)
358 cd05278 FDH_like Formaldehyde 93.6 0.25 5.4E-06 49.5 7.7 100 128-240 164-267 (347)
359 PRK09496 trkA potassium transp 93.6 0.54 1.2E-05 49.7 10.6 95 133-240 1-99 (453)
360 PRK15076 alpha-galactosidase; 93.4 0.093 2E-06 56.9 4.8 79 133-214 2-86 (431)
361 PLN02688 pyrroline-5-carboxyla 93.4 0.38 8.2E-06 47.5 8.6 90 133-238 1-93 (266)
362 PHA01634 hypothetical protein 93.4 0.42 9.1E-06 45.3 8.3 74 130-212 27-101 (156)
363 PRK08655 prephenate dehydrogen 93.4 0.33 7.1E-06 52.7 8.8 89 133-238 1-90 (437)
364 cd05285 sorbitol_DH Sorbitol d 93.3 0.4 8.7E-06 48.4 8.7 101 127-240 158-265 (343)
365 COG1867 TRM1 N2,N2-dimethylgua 93.3 0.35 7.5E-06 52.1 8.5 102 132-241 53-155 (380)
366 TIGR00692 tdh L-threonine 3-de 93.2 0.31 6.7E-06 49.2 7.9 99 129-240 159-261 (340)
367 KOG4058 Uncharacterized conser 93.2 0.35 7.7E-06 46.9 7.7 117 112-238 53-170 (199)
368 PRK03562 glutathione-regulated 93.2 0.54 1.2E-05 53.2 10.5 96 132-241 400-499 (621)
369 cd08278 benzyl_alcohol_DH Benz 93.2 0.27 5.8E-06 50.7 7.4 100 128-240 183-285 (365)
370 PTZ00075 Adenosylhomocysteinas 93.2 0.34 7.5E-06 53.6 8.6 109 109-239 230-340 (476)
371 PLN02353 probable UDP-glucose 93.1 0.62 1.3E-05 51.3 10.6 104 133-241 2-128 (473)
372 PRK13403 ketol-acid reductoiso 93.1 0.63 1.4E-05 49.5 10.2 93 130-243 14-107 (335)
373 PRK06249 2-dehydropantoate 2-r 93.0 0.37 8E-06 49.3 8.1 96 131-238 4-104 (313)
374 TIGR02437 FadB fatty oxidation 93.0 0.39 8.4E-06 55.3 9.1 102 131-241 312-429 (714)
375 TIGR03026 NDP-sugDHase nucleot 93.0 0.55 1.2E-05 50.0 9.7 99 133-240 1-120 (411)
376 cd08265 Zn_ADH3 Alcohol dehydr 93.0 0.43 9.3E-06 49.6 8.6 100 128-240 200-307 (384)
377 PRK01438 murD UDP-N-acetylmura 92.9 0.4 8.7E-06 51.6 8.6 74 131-214 15-89 (480)
378 PRK09599 6-phosphogluconate de 92.9 0.54 1.2E-05 47.9 9.0 92 133-239 1-93 (301)
379 COG3510 CmcI Cephalosporin hyd 92.8 0.77 1.7E-05 46.2 9.7 103 130-241 68-181 (237)
380 cd08234 threonine_DH_like L-th 92.8 0.97 2.1E-05 45.0 10.6 98 127-240 155-257 (334)
381 PRK00066 ldh L-lactate dehydro 92.8 1.2 2.5E-05 46.4 11.5 105 130-240 4-122 (315)
382 COG1189 Predicted rRNA methyla 92.8 0.59 1.3E-05 47.8 9.0 98 130-240 78-178 (245)
383 cd08291 ETR_like_1 2-enoyl thi 92.8 0.29 6.3E-06 49.0 6.9 96 131-240 142-242 (324)
384 cd05292 LDH_2 A subgroup of L- 92.6 1 2.2E-05 46.5 10.7 100 133-240 1-116 (308)
385 PRK03659 glutathione-regulated 92.5 0.66 1.4E-05 52.2 10.0 96 132-241 400-499 (601)
386 PRK11154 fadJ multifunctional 92.5 0.58 1.3E-05 53.7 9.6 102 132-241 309-426 (708)
387 PRK11730 fadB multifunctional 92.5 0.54 1.2E-05 54.1 9.3 100 133-241 314-429 (715)
388 cd08261 Zn_ADH7 Alcohol dehydr 92.4 0.58 1.3E-05 47.0 8.5 101 127-240 155-258 (337)
389 cd08299 alcohol_DH_class_I_II_ 92.4 0.88 1.9E-05 47.3 10.0 99 127-240 186-292 (373)
390 PRK14106 murD UDP-N-acetylmura 92.3 0.45 9.7E-06 50.5 7.9 75 131-214 4-79 (450)
391 PRK06223 malate dehydrogenase; 92.2 0.76 1.6E-05 46.7 9.1 99 133-238 3-117 (307)
392 PLN02702 L-idonate 5-dehydroge 92.2 0.65 1.4E-05 47.5 8.7 101 127-240 177-285 (364)
393 PRK12490 6-phosphogluconate de 92.2 0.68 1.5E-05 47.2 8.7 92 133-239 1-93 (299)
394 cd05289 MDR_like_2 alcohol deh 92.2 1.2 2.6E-05 42.8 10.0 95 128-240 141-238 (309)
395 PRK12771 putative glutamate sy 92.1 0.23 4.9E-06 54.9 5.6 37 129-167 134-170 (564)
396 cd08260 Zn_ADH6 Alcohol dehydr 92.0 0.66 1.4E-05 46.7 8.4 101 127-240 161-264 (345)
397 PTZ00082 L-lactate dehydrogena 92.0 1.3 2.9E-05 46.2 10.8 76 131-213 5-84 (321)
398 PRK10669 putative cation:proto 92.0 0.8 1.7E-05 50.7 9.6 95 133-241 418-516 (558)
399 cd08240 6_hydroxyhexanoate_dh_ 92.0 0.73 1.6E-05 46.6 8.6 96 129-240 173-274 (350)
400 TIGR01470 cysG_Nterm siroheme 92.0 0.89 1.9E-05 44.6 9.0 90 131-237 8-97 (205)
401 PRK05562 precorrin-2 dehydroge 92.0 0.52 1.1E-05 47.3 7.4 89 130-237 23-113 (223)
402 PTZ00142 6-phosphogluconate de 91.9 0.84 1.8E-05 50.3 9.6 99 133-241 2-101 (470)
403 PRK12491 pyrroline-5-carboxyla 91.9 0.85 1.8E-05 46.4 9.0 91 133-238 3-95 (272)
404 KOG1501 Arginine N-methyltrans 91.8 0.29 6.3E-06 54.0 5.8 62 133-198 68-129 (636)
405 KOG3115 Methyltransferase-like 91.8 0.5 1.1E-05 47.8 7.0 109 130-240 59-183 (249)
406 cd05288 PGDH Prostaglandin deh 91.7 0.92 2E-05 44.9 8.9 99 127-240 141-244 (329)
407 cd08248 RTN4I1 Human Reticulon 91.7 0.93 2E-05 45.4 9.0 95 131-240 162-257 (350)
408 cd08236 sugar_DH NAD(P)-depend 91.7 0.82 1.8E-05 45.9 8.6 100 128-240 156-258 (343)
409 PRK06545 prephenate dehydrogen 91.6 0.61 1.3E-05 49.0 7.9 91 133-237 1-92 (359)
410 PRK11559 garR tartronate semia 91.6 0.68 1.5E-05 46.6 7.9 87 133-237 3-93 (296)
411 cd08279 Zn_ADH_class_III Class 91.6 0.72 1.6E-05 47.3 8.2 102 127-241 178-283 (363)
412 cd08276 MDR7 Medium chain dehy 91.5 0.86 1.9E-05 44.8 8.4 100 127-240 156-259 (336)
413 KOG0822 Protein kinase inhibit 91.5 0.6 1.3E-05 52.6 7.9 107 132-241 368-479 (649)
414 PF05430 Methyltransf_30: S-ad 91.5 0.25 5.3E-06 45.3 4.2 74 186-266 32-111 (124)
415 KOG4589 Cell division protein 91.4 0.82 1.8E-05 45.8 8.0 136 129-281 67-226 (232)
416 cd05293 LDH_1 A subgroup of L- 91.3 2.6 5.6E-05 43.9 12.0 104 131-240 2-120 (312)
417 cd05286 QOR2 Quinone oxidoredu 91.3 1.1 2.3E-05 43.2 8.6 98 127-240 132-235 (320)
418 cd08263 Zn_ADH10 Alcohol dehyd 91.3 0.78 1.7E-05 47.0 8.1 100 128-240 184-287 (367)
419 PRK09496 trkA potassium transp 91.3 2 4.2E-05 45.5 11.3 98 130-240 229-330 (453)
420 cd08284 FDH_like_2 Glutathione 91.2 1.9 4E-05 43.3 10.5 99 128-240 164-266 (344)
421 cd08267 MDR1 Medium chain dehy 91.2 1.7 3.7E-05 42.3 10.0 100 128-240 140-240 (319)
422 PF02056 Glyco_hydro_4: Family 91.2 1 2.2E-05 44.1 8.3 86 134-227 1-95 (183)
423 PRK03369 murD UDP-N-acetylmura 91.2 0.6 1.3E-05 51.0 7.5 72 130-214 10-81 (488)
424 PF02558 ApbA: Ketopantoate re 91.2 0.48 1E-05 42.6 5.7 94 135-238 1-99 (151)
425 cd08243 quinone_oxidoreductase 91.1 1.6 3.5E-05 42.5 9.8 99 127-240 138-238 (320)
426 PTZ00117 malate dehydrogenase; 91.0 1.3 2.7E-05 46.2 9.4 103 131-241 4-124 (319)
427 cd08241 QOR1 Quinone oxidoredu 91.0 1.3 2.7E-05 42.8 8.8 100 127-240 135-238 (323)
428 PRK14806 bifunctional cyclohex 90.9 0.78 1.7E-05 52.2 8.4 89 133-237 4-94 (735)
429 COG4798 Predicted methyltransf 90.9 0.94 2E-05 45.6 7.8 111 125-240 42-166 (238)
430 PRK14618 NAD(P)H-dependent gly 90.8 0.79 1.7E-05 47.0 7.7 95 130-238 2-102 (328)
431 PRK02705 murD UDP-N-acetylmura 90.8 1.8 3.9E-05 46.2 10.6 74 134-214 2-79 (459)
432 COG3129 Predicted SAM-dependen 90.8 0.34 7.4E-06 49.8 4.8 82 130-214 77-164 (292)
433 PRK07679 pyrroline-5-carboxyla 90.7 1.4 3.1E-05 44.3 9.2 93 132-238 3-97 (279)
434 cd08282 PFDH_like Pseudomonas 90.6 0.91 2E-05 47.0 7.9 104 127-239 172-284 (375)
435 TIGR01915 npdG NADPH-dependent 90.6 2.3 5E-05 41.4 10.3 101 133-243 1-103 (219)
436 cd05298 GH4_GlvA_pagL_like Gly 90.6 0.89 1.9E-05 49.7 8.1 76 133-214 1-85 (437)
437 PF03807 F420_oxidored: NADP o 90.5 1.1 2.4E-05 37.3 7.0 88 134-238 1-92 (96)
438 COG4301 Uncharacterized conser 90.4 2.9 6.3E-05 43.6 11.0 109 129-240 76-193 (321)
439 PRK00045 hemA glutamyl-tRNA re 90.4 1.6 3.4E-05 47.0 9.7 72 130-213 180-252 (423)
440 PLN02712 arogenate dehydrogena 90.3 1.1 2.4E-05 51.4 8.8 90 130-237 50-140 (667)
441 TIGR02440 FadJ fatty oxidation 90.3 1.1 2.3E-05 51.6 8.7 101 133-241 305-421 (699)
442 cd05291 HicDH_like L-2-hydroxy 90.2 3.1 6.7E-05 42.8 11.2 75 133-213 1-78 (306)
443 PF03446 NAD_binding_2: NAD bi 90.1 0.99 2.2E-05 41.9 7.0 91 133-241 2-95 (163)
444 PRK12480 D-lactate dehydrogena 90.1 0.74 1.6E-05 48.2 6.8 92 131-243 145-236 (330)
445 cd05197 GH4_glycoside_hydrolas 90.1 1.1 2.4E-05 48.7 8.3 76 133-214 1-85 (425)
446 cd08290 ETR 2-enoyl thioester 90.0 1.1 2.4E-05 44.9 7.7 104 127-240 142-251 (341)
447 PRK13243 glyoxylate reductase; 90.0 0.74 1.6E-05 48.2 6.7 94 130-243 148-242 (333)
448 PF02826 2-Hacid_dh_C: D-isome 90.0 0.44 9.6E-06 45.1 4.6 96 130-243 34-129 (178)
449 PRK13771 putative alcohol dehy 90.0 2.3 4.9E-05 42.5 9.9 96 128-240 159-255 (334)
450 cd05283 CAD1 Cinnamyl alcohol 90.0 1.8 3.9E-05 43.8 9.2 97 128-240 166-263 (337)
451 cd01339 LDH-like_MDH L-lactate 89.9 1.5 3.2E-05 44.8 8.7 100 135-241 1-117 (300)
452 PRK12769 putative oxidoreducta 89.8 0.42 9.1E-06 53.9 5.1 76 131-213 326-422 (654)
453 KOG0022 Alcohol dehydrogenase, 89.7 0.58 1.3E-05 49.9 5.6 104 121-239 182-293 (375)
454 PTZ00354 alcohol dehydrogenase 89.7 2.5 5.4E-05 41.7 9.8 98 127-240 136-240 (334)
455 cd08264 Zn_ADH_like2 Alcohol d 89.7 1.7 3.8E-05 43.1 8.8 94 127-240 158-253 (325)
456 cd05296 GH4_P_beta_glucosidase 89.7 2.8 6.1E-05 45.6 11.0 76 133-214 1-86 (419)
457 cd08246 crotonyl_coA_red croto 89.7 1.2 2.5E-05 46.3 7.8 46 128-175 190-236 (393)
458 PRK14620 NAD(P)H-dependent gly 89.7 1.9 4.2E-05 44.1 9.3 102 133-244 1-109 (326)
459 PRK05786 fabG 3-ketoacyl-(acyl 89.6 4.1 8.9E-05 38.5 10.8 104 131-240 4-135 (238)
460 PRK08324 short chain dehydroge 89.6 3.3 7.2E-05 47.1 11.9 104 131-240 421-557 (681)
461 PF13241 NAD_binding_7: Putati 89.5 2.1 4.5E-05 37.2 8.1 87 130-240 5-91 (103)
462 cd08250 Mgc45594_like Mgc45594 89.4 2.1 4.5E-05 42.6 9.1 97 127-240 135-237 (329)
463 PRK06928 pyrroline-5-carboxyla 89.4 1.8 3.9E-05 43.8 8.8 93 133-238 2-96 (277)
464 TIGR02853 spore_dpaA dipicolin 89.4 0.99 2.1E-05 46.4 7.0 89 130-237 149-237 (287)
465 COG2084 MmsB 3-hydroxyisobutyr 89.4 0.91 2E-05 47.3 6.7 92 133-241 1-96 (286)
466 PRK08818 prephenate dehydrogen 89.4 1.2 2.6E-05 47.8 7.8 80 131-239 3-86 (370)
467 PLN02712 arogenate dehydrogena 89.4 26 0.00057 40.5 18.8 90 130-237 367-457 (667)
468 cd05281 TDH Threonine dehydrog 89.3 1.3 2.9E-05 44.7 7.8 98 130-240 162-262 (341)
469 PRK05442 malate dehydrogenase; 89.3 1.7 3.8E-05 45.7 8.8 107 130-240 2-130 (326)
470 TIGR01035 hemA glutamyl-tRNA r 89.1 2 4.4E-05 46.3 9.4 73 129-213 177-250 (417)
471 cd01338 MDH_choloroplast_like 89.1 1.8 3.9E-05 45.3 8.8 106 131-240 1-128 (322)
472 KOG2198 tRNA cytosine-5-methyl 89.1 4.7 0.0001 43.7 11.9 122 117-240 139-296 (375)
473 cd08274 MDR9 Medium chain dehy 89.1 4 8.6E-05 40.9 10.9 96 127-240 173-273 (350)
474 COG1748 LYS9 Saccharopine dehy 89.0 1.4 3.1E-05 47.7 8.1 73 133-213 2-78 (389)
475 PRK05479 ketol-acid reductoiso 89.0 1.5 3.2E-05 46.5 8.0 94 130-243 15-109 (330)
476 PRK05396 tdh L-threonine 3-deh 89.0 1.3 2.9E-05 44.5 7.5 98 130-240 162-263 (341)
477 COG0569 TrkA K+ transport syst 88.9 3.5 7.5E-05 40.9 10.2 85 133-229 1-89 (225)
478 cd05284 arabinose_DH_like D-ar 88.8 2.1 4.6E-05 42.8 8.7 98 129-240 165-266 (340)
479 TIGR02817 adh_fam_1 zinc-bindi 88.7 2.5 5.5E-05 42.1 9.1 93 132-239 149-246 (336)
480 PRK08217 fabG 3-ketoacyl-(acyl 88.7 2.3 5.1E-05 40.2 8.5 61 131-196 4-65 (253)
481 PRK07680 late competence prote 88.7 2.1 4.5E-05 42.9 8.5 92 133-238 1-94 (273)
482 KOG1253 tRNA methyltransferase 88.6 0.38 8.3E-06 53.5 3.5 106 130-242 108-218 (525)
483 cd08287 FDH_like_ADH3 formalde 88.6 1.2 2.7E-05 44.7 6.9 101 127-240 164-268 (345)
484 cd08244 MDR_enoyl_red Possible 88.6 2.3 4.9E-05 41.9 8.6 100 127-240 138-241 (324)
485 cd08252 AL_MDR Arginate lyase 88.5 2.7 5.8E-05 41.8 9.2 95 132-240 150-248 (336)
486 PRK10754 quinone oxidoreductas 88.5 2 4.3E-05 42.8 8.2 97 127-240 136-239 (327)
487 COG1004 Ugd Predicted UDP-gluc 88.5 2.4 5.2E-05 46.4 9.3 101 133-241 1-121 (414)
488 cd08258 Zn_ADH4 Alcohol dehydr 88.3 2.4 5.2E-05 42.5 8.7 100 127-240 160-264 (306)
489 cd08289 MDR_yhfp_like Yhfp put 88.2 2.1 4.5E-05 42.4 8.2 95 131-241 146-244 (326)
490 PF03686 UPF0146: Uncharacteri 88.2 0.96 2.1E-05 42.2 5.3 90 130-240 12-102 (127)
491 PRK12809 putative oxidoreducta 88.2 0.61 1.3E-05 52.6 4.9 76 131-213 309-405 (639)
492 PRK11199 tyrA bifunctional cho 88.2 3.9 8.4E-05 43.5 10.6 77 131-240 97-174 (374)
493 cd08256 Zn_ADH2 Alcohol dehydr 88.0 2.1 4.5E-05 43.4 8.2 100 127-239 170-273 (350)
494 PLN02350 phosphogluconate dehy 87.9 1.9 4.1E-05 48.0 8.4 99 132-238 6-105 (493)
495 PF01210 NAD_Gly3P_dh_N: NAD-d 87.9 2.2 4.8E-05 39.6 7.6 97 134-239 1-102 (157)
496 PRK06141 ornithine cyclodeamin 87.8 2 4.3E-05 44.5 8.0 96 130-239 123-218 (314)
497 TIGR02354 thiF_fam2 thiamine b 87.8 3.6 7.7E-05 40.3 9.3 101 131-237 20-142 (200)
498 PRK00141 murD UDP-N-acetylmura 87.8 1.6 3.5E-05 47.5 7.6 72 131-214 14-85 (473)
499 cd08297 CAD3 Cinnamyl alcohol 87.7 2.5 5.4E-05 42.4 8.4 100 128-240 162-265 (341)
500 cd00315 Cyt_C5_DNA_methylase C 87.6 1.4 3E-05 44.8 6.6 100 134-245 2-116 (275)
No 1
>PLN03075 nicotianamine synthase; Provisional
Probab=100.00 E-value=2e-69 Score=546.58 Aligned_cols=271 Identities=54% Similarity=0.870 Sum_probs=258.3
Q ss_pred cCCCCChHHHHHHHHHHHHHHccCCCCCCchhHHHHHHHHHHhhcCCcchhhhcCChHHHHHHHHHHHHHHHHhHhhhhH
Q 041205 9 FQGQIPGEFLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSIDIKALPQEVQQMRQSLIILCARAESLLELE 88 (535)
Q Consensus 9 ~~~~i~~e~LI~~I~~ly~~Is~L~sL~PS~~VNaLFt~LV~lC~~~~~~dv~~l~~~vq~l~~~Lr~lca~AE~~LE~h 88 (535)
....+++|.+|++|+++|++|++|++|+||++||+||++||++|+++.++|++.+++++|+|++.||++|++||++||.|
T Consensus 2 ~~~~~~~~~~i~~i~~~y~~i~~l~~l~ps~~v~~lf~~Lv~~c~~~~~~~~~~l~~~i~~~~~~l~~l~~~ae~~lE~~ 81 (296)
T PLN03075 2 EEMGCQEELLVEKICDLYAQISKLESLKPSKEVNTLFTQLVSTCIPPSSIDVTKLCEEIQEMRSKLIKLCGEAEGLLEAH 81 (296)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhCcccCCchhHHHHHHHHHHHhCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhhccCCCccccccCccchhhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChh
Q 041205 89 FATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDET 168 (535)
Q Consensus 89 ~A~~Lls~~~pl~~L~~FpYy~NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpe 168 (535)
||+.|++.++||++|+.||||+||++|++.|+..+..+.. .++++|+||||||+|+|+++++.+++|+++|+|||+|++
T Consensus 82 ~a~~i~~~~~p~~~l~~Fpy~~nY~~L~~lE~~~L~~~~~-~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ 160 (296)
T PLN03075 82 FSTILGSFDNPLDHLNLFPYYNNYLKLSKLEFDLLSQHVN-GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPS 160 (296)
T ss_pred HHHHHhcCCcHHHHhhcCCchHHHHHHHHHHHHHHHHhhc-CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHH
Confidence 9999999999999999999999999999999999988766 489999999999999999999988899999999999999
Q ss_pred HHHHHHHHHhh-cCCcCCCeEEEEccccccccCCCCcceEEeccccCC-hhhHHHHHHHHHhhcccCeEEEEEccccccc
Q 041205 169 ANNLARRIVSS-DDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAGN-EEEKAKILGHIRKYMKEGGVLLVRSAKGARA 246 (535)
Q Consensus 169 AIelAR~li~~-lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALVgm-~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~ 246 (535)
+++.||+++++ .| +.++|+|+++|+.+....+++||+||++++++| .++|.+++++++++|+|||+|++|++||+|+
T Consensus 161 ai~~Ar~~~~~~~g-L~~rV~F~~~Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~ 239 (296)
T PLN03075 161 ANDVARRLVSSDPD-LSKRMFFHTADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARA 239 (296)
T ss_pred HHHHHHHHhhhccC-ccCCcEEEECchhhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccchHh
Confidence 99999999965 77 889999999999987555678999999999998 8999999999999999999999999999999
Q ss_pred ccCCCCcc-ccCCcEEEEEEcCCCcceeeeEEEecC
Q 041205 247 FLYPVVEH-ELFDFKVLSIFHPTNDVINSVVLLQLP 281 (535)
Q Consensus 247 fLYP~Vdp-dl~GFeil~v~hP~~eVINSVVvARK~ 281 (535)
|+||+|++ ++.||+++.++||+++|+|||||+||.
T Consensus 240 ~LYp~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~ 275 (296)
T PLN03075 240 FLYPVVDPCDLRGFEVLSVFHPTDEVINSVIIARKP 275 (296)
T ss_pred hcCCCCChhhCCCeEEEEEECCCCCceeeEEEEEee
Confidence 99999999 889999999999999999999999995
No 2
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=100.00 E-value=4.2e-69 Score=539.70 Aligned_cols=267 Identities=51% Similarity=0.800 Sum_probs=166.5
Q ss_pred CChHHHHHHHHHHHHHHccCCCCCCchhHHHHHHHHHHhhcCCcchhhhcCChHHHHHHHHHHHHHHHHhHhhhhHHHhH
Q 041205 13 IPGEFLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSIDIKALPQEVQQMRQSLIILCARAESLLELEFATY 92 (535)
Q Consensus 13 i~~e~LI~~I~~ly~~Is~L~sL~PS~~VNaLFt~LV~lC~~~~~~dv~~l~~~vq~l~~~Lr~lca~AE~~LE~h~A~~ 92 (535)
.++|.+|++|+++|++|++|+||+|||+||+||++||.+|+++++.|++.++|++++++++||++|++||++||.|||+.
T Consensus 3 ~~~~~lv~~i~~ly~~i~~L~sl~ps~~vn~lF~~Lv~~c~~~~~~dv~~L~~~i~~~~~~L~~~~~~ae~~LE~~~A~~ 82 (276)
T PF03059_consen 3 KEAEALVEKILSLYAQISKLESLSPSPEVNALFTQLVSLCIPPSPIDVTKLSPEIQSIRPSLRRLCSEAEGLLESHWAKR 82 (276)
T ss_dssp ---------------------------------------------------TGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCccccccCccchhhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHH
Q 041205 93 LSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNL 172 (535)
Q Consensus 93 Lls~~~pl~~L~~FpYy~NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIel 172 (535)
|+++++||++|+.||||+||++|+++|++.+....+ ..|+||+||||||+|+|+|+||++|.+++.|+|||+|++|+++
T Consensus 83 l~~~~~p~~~L~~FpYy~nY~~L~~lE~~~l~~~~~-~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~ 161 (276)
T PF03059_consen 83 LLASDNPLDHLESFPYYPNYEKLVRLEYAALRIHAG-DPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANEL 161 (276)
T ss_dssp HHH-SSHHHHHHTSTTHHHHHHHHHHHHH-HTT--T-T---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHH
T ss_pred HHhCCCHHHHHhcCCcHHHHHHHHHHHHHHHhhcCC-cccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHH
Confidence 999999999999999999999999999999887655 4678999999999999999999978889999999999999999
Q ss_pred HHHHHh-hcCCcCCCeEEEEccccccccCCCCcceEEeccccCC-hhhHHHHHHHHHhhcccCeEEEEEcccccccccCC
Q 041205 173 ARRIVS-SDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAGN-EEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYP 250 (535)
Q Consensus 173 AR~li~-~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALVgm-~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP 250 (535)
|+++++ ..| ++++|+|+++|+.++..++.+||+||++++||| .++|.++|+++.++|+||++|++|+++|+|+|+||
T Consensus 162 a~~lv~~~~~-L~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp 240 (276)
T PF03059_consen 162 ARRLVASDLG-LSKRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYP 240 (276)
T ss_dssp HHHHHH---H-H-SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS-
T ss_pred HHHHHhhccc-ccCCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCC
Confidence 999999 566 889999999999998888889999999999999 99999999999999999999999999999999999
Q ss_pred CCcc-ccCCcEEEEEEcCCCcceeeeEEEecC
Q 041205 251 VVEH-ELFDFKVLSIFHPTNDVINSVVLLQLP 281 (535)
Q Consensus 251 ~Vdp-dl~GFeil~v~hP~~eVINSVVvARK~ 281 (535)
++++ ++.||+++.++||+++|+|||||+||.
T Consensus 241 ~vd~~~l~gf~~~~~~hP~~~ViNSvv~~rk~ 272 (276)
T PF03059_consen 241 VVDPEDLRGFEVLAVVHPTDEVINSVVFARKK 272 (276)
T ss_dssp ---TGGGTTEEEEEEE---TT---EEEEE---
T ss_pred CCChHHCCCeEEEEEECCCCCceeEEEEEEec
Confidence 9999 889999999999999999999999995
No 3
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.74 E-value=6.8e-18 Score=165.62 Aligned_cols=135 Identities=20% Similarity=0.377 Sum_probs=111.9
Q ss_pred cccccCccchhhHHhHHHHHHHHHH-hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh
Q 041205 101 NDLNRFPYYENYVKLAKLEYGALIE-NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSS 179 (535)
Q Consensus 101 ~~L~~FpYy~NYv~LirlE~~lL~~-~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~ 179 (535)
..++.|.+ .+-.+.+..|-..|.. .+.+.++++|||||++ +|||++|||.....++++++||+|+++++.|++++++
T Consensus 29 ~~~~e~a~-~~~~pi~~~e~g~~L~~L~~~~~~k~iLEiGT~-~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ 106 (219)
T COG4122 29 AELEEFAR-ENGVPIIDPETGALLRLLARLSGPKRILEIGTA-IGYSALWMALALPDDGRLTTIERDEERAEIARENLAE 106 (219)
T ss_pred HHHHHHhH-hcCCCCCChhHHHHHHHHHHhcCCceEEEeecc-cCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 34455555 3334444355544444 4467899999999998 8999999999544388999999999999999999999
Q ss_pred cCCcCCCeEEEE-ccccccccC--CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 180 DDEIEKRMKFLT-CDIMEVKEK--LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 180 lG~Ls~rI~Fi~-GDA~el~~d--L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
+| ++++|+++. ||+.+.... .+.||+||+|+.+ .++..+|+.+.+.|+|||+++++|.
T Consensus 107 ag-~~~~i~~~~~gdal~~l~~~~~~~fDliFIDadK---~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 107 AG-VDDRIELLLGGDALDVLSRLLDGSFDLVFIDADK---ADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred cC-CcceEEEEecCcHHHHHHhccCCCccEEEEeCCh---hhCHHHHHHHHHHhCCCcEEEEeec
Confidence 99 889999999 699887775 3679999999999 6999999999999999999999996
No 4
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.73 E-value=7.4e-18 Score=163.19 Aligned_cols=120 Identities=18% Similarity=0.292 Sum_probs=102.0
Q ss_pred HHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc
Q 041205 117 KLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME 196 (535)
Q Consensus 117 rlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e 196 (535)
..+-..|..++.+..+++||||||| .|||+++||+...++++|++||+|++..+.|++++++.| ++++|+++.||+.+
T Consensus 31 ~~~g~lL~~l~~~~~~k~vLEIGt~-~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag-~~~~I~~~~gda~~ 108 (205)
T PF01596_consen 31 PETGQLLQMLVRLTRPKRVLEIGTF-TGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG-LDDRIEVIEGDALE 108 (205)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEESTT-TSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT-GGGGEEEEES-HHH
T ss_pred HHHHHHHHHHHHhcCCceEEEeccc-cccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC-CCCcEEEEEeccHh
Confidence 3344444444556789999999998 799999999955568999999999999999999999999 88999999999987
Q ss_pred cccCC------CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 197 VKEKL------GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 197 l~~dL------~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
+...+ +.||+||+|+.+ .+|..+++.+.+.|+|||++++++.
T Consensus 109 ~l~~l~~~~~~~~fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 109 VLPELANDGEEGQFDFVFIDADK---RNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp HHHHHHHTTTTTSEEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred hHHHHHhccCCCceeEEEEcccc---cchhhHHHHHhhhccCCeEEEEccc
Confidence 65422 469999999998 6999999999999999999999996
No 5
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.72 E-value=3.8e-17 Score=138.03 Aligned_cols=107 Identities=23% Similarity=0.352 Sum_probs=88.6
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA 210 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia 210 (535)
|+.+|||||||+ |..++.+++ ..++++|+|||+|+++++.|++.+...+ ..++|+|+++|+.........||+|++.
T Consensus 1 p~~~vLDlGcG~-G~~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGT-GRLSIALAR-LFPGARVVGVDISPEMLEIARERAAEEG-LSDRITFVQGDAEFDPDFLEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTT-SHHHHHHHH-HHTTSEEEEEESSHHHHHHHHHHHHHTT-TTTTEEEEESCCHGGTTTSSCEEEEEEC
T ss_pred CCCEEEEEcCcC-CHHHHHHHh-cCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECccccCcccCCCCCEEEEC
Confidence 578999999996 777788877 4689999999999999999999997777 6799999999992122333569999998
Q ss_pred c-ccC-C--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 211 A-LAG-N--EEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 211 A-LVg-m--~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
. ..+ + .+++.++++.+++.|+|||+|++.+
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 7 221 2 3688999999999999999999874
No 6
>PLN02476 O-methyltransferase
Probab=99.68 E-value=1.6e-16 Score=160.71 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=103.6
Q ss_pred HHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc
Q 041205 118 LEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV 197 (535)
Q Consensus 118 lE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el 197 (535)
.+...+..+..+.++++||||||| .|+|++++|....++++|+++|+|+++++.|++++++.| +.++|+++.||+.+.
T Consensus 105 ~~g~lL~~L~~~~~ak~VLEIGT~-tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG-l~~~I~li~GdA~e~ 182 (278)
T PLN02476 105 DQAQLLAMLVQILGAERCIEVGVY-TGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG-VSHKVNVKHGLAAES 182 (278)
T ss_pred HHHHHHHHHHHhcCCCeEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCHHHH
Confidence 334444445567889999999998 699999999854558899999999999999999999999 889999999999886
Q ss_pred ccCC------CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 198 KEKL------GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 198 ~~dL------~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
+..+ +.||+||+++.+ .++..+++.+.+.|+|||+|++++.
T Consensus 183 L~~l~~~~~~~~FD~VFIDa~K---~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 183 LKSMIQNGEGSSYDFAFVDADK---RMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred HHHHHhcccCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCcEEEEecC
Confidence 6433 469999999888 6899999999999999999999996
No 7
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.67 E-value=3.5e-16 Score=155.70 Aligned_cols=120 Identities=15% Similarity=0.171 Sum_probs=105.1
Q ss_pred HHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc
Q 041205 117 KLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME 196 (535)
Q Consensus 117 rlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e 196 (535)
..+-..+..++...++++|||||++ .|||+++||....++++|+++|+|++..+.|+++++++| +.++|+++.||+.+
T Consensus 65 ~~~g~lL~~l~~~~~ak~iLEiGT~-~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag-~~~~I~~~~G~a~e 142 (247)
T PLN02589 65 ADEGQFLNMLLKLINAKNTMEIGVY-TGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG-VAHKIDFREGPALP 142 (247)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCh-hhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC-CCCceEEEeccHHH
Confidence 3444555555566789999999998 799999999965578999999999999999999999999 88999999999988
Q ss_pred cccCC-------CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 197 VKEKL-------GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 197 l~~dL-------~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
.+..+ +.||+||+|+.+ ..|..+++.+.+.|+|||+|++++.
T Consensus 143 ~L~~l~~~~~~~~~fD~iFiDadK---~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 143 VLDQMIEDGKYHGTFDFIFVDADK---DNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred HHHHHHhccccCCcccEEEecCCH---HHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 76543 479999999998 6899999999999999999999986
No 8
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.67 E-value=4.2e-16 Score=152.72 Aligned_cols=115 Identities=16% Similarity=0.243 Sum_probs=100.2
Q ss_pred HHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC-
Q 041205 122 ALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK- 200 (535)
Q Consensus 122 lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d- 200 (535)
.+..+..+.++++||||||| .|+|+++||....++++|+++|+|+++++.|++++++.| ++++|+++.||+.+....
T Consensus 59 ~L~~l~~~~~~~~vLEiGt~-~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g-l~~~i~~~~gda~~~L~~l 136 (234)
T PLN02781 59 FLSMLVKIMNAKNTLEIGVF-TGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG-VDHKINFIQSDALSALDQL 136 (234)
T ss_pred HHHHHHHHhCCCEEEEecCc-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEccHHHHHHHH
Confidence 33334456789999999999 699999999854557899999999999999999999999 889999999999876543
Q ss_pred -----CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 201 -----LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 201 -----L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
.+.||+||+++.+ +.+..+++.+.+.|+|||+|++.+.
T Consensus 137 ~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 137 LNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred HhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 2469999999887 7899999999999999999999885
No 9
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.64 E-value=8.3e-16 Score=151.12 Aligned_cols=112 Identities=17% Similarity=0.228 Sum_probs=83.8
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC 206 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv 206 (535)
....++.+|||||||+ |-.++.++++..++++|+|+|++++|++.|++.+...| . .+|+|+++|+.+++++.+.||+
T Consensus 43 ~~~~~g~~vLDv~~Gt-G~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~-~-~~i~~v~~da~~lp~~d~sfD~ 119 (233)
T PF01209_consen 43 LGLRPGDRVLDVACGT-GDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG-L-QNIEFVQGDAEDLPFPDNSFDA 119 (233)
T ss_dssp HT--S--EEEEET-TT-SHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT----SEEEEE-BTTB--S-TT-EEE
T ss_pred cCCCCCCEEEEeCCCh-HHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC-C-CCeeEEEcCHHHhcCCCCceeE
Confidence 3447899999999996 67778888855678999999999999999999999988 4 4999999999999998888999
Q ss_pred EEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
|+++..+...+++.+.+++++|+|||||++++-+.
T Consensus 120 v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 120 VTCSFGLRNFPDRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp EEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeec
Confidence 99876665568899999999999999999988663
No 10
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=1.5e-15 Score=150.68 Aligned_cols=108 Identities=21% Similarity=0.297 Sum_probs=97.0
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII 208 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf 208 (535)
..+|.+|||||||+ |--++.+++. .+.++|+++|+++.|++.|++.....| ... |+|+.|||.++|++++.||+|.
T Consensus 49 ~~~g~~vLDva~GT-Gd~a~~~~k~-~g~g~v~~~D~s~~ML~~a~~k~~~~~-~~~-i~fv~~dAe~LPf~D~sFD~vt 124 (238)
T COG2226 49 IKPGDKVLDVACGT-GDMALLLAKS-VGTGEVVGLDISESMLEVAREKLKKKG-VQN-VEFVVGDAENLPFPDNSFDAVT 124 (238)
T ss_pred CCCCCEEEEecCCc-cHHHHHHHHh-cCCceEEEEECCHHHHHHHHHHhhccC-ccc-eEEEEechhhCCCCCCccCEEE
Confidence 35899999999996 7777888884 558999999999999999999999988 544 9999999999999999999999
Q ss_pred eccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
++......+++.++|++++|+|||||++++-.
T Consensus 125 ~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 125 ISFGLRNVTDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred eeehhhcCCCHHHHHHHHHHhhcCCeEEEEEE
Confidence 98766556899999999999999999998866
No 11
>PLN02244 tocopherol O-methyltransferase
Probab=99.63 E-value=4.6e-15 Score=152.25 Aligned_cols=107 Identities=16% Similarity=0.279 Sum_probs=92.3
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
.++++|||||||+ |..++.+++. .|++|+|||+++.+++.|+++++..| +.++++|+++|+.++++..+.||+|+.
T Consensus 117 ~~~~~VLDiGCG~-G~~~~~La~~--~g~~v~gvD~s~~~i~~a~~~~~~~g-~~~~v~~~~~D~~~~~~~~~~FD~V~s 192 (340)
T PLN02244 117 KRPKRIVDVGCGI-GGSSRYLARK--YGANVKGITLSPVQAARANALAAAQG-LSDKVSFQVADALNQPFEDGQFDLVWS 192 (340)
T ss_pred CCCCeEEEecCCC-CHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEEcCcccCCCCCCCccEEEE
Confidence 5789999999996 6677788883 38999999999999999999999888 678999999999988877788999997
Q ss_pred ccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
....+..+++.+++.+++++|||||.|++-+
T Consensus 193 ~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 193 MESGEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CCchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 5443335789999999999999999998854
No 12
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.62 E-value=4.5e-15 Score=133.85 Aligned_cols=110 Identities=23% Similarity=0.378 Sum_probs=93.4
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-CCcceEE
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-GEYDCII 208 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-~~FDvVf 208 (535)
+.+.+|||+|||+ |..++.+++...++++|+|||+|+++++.|++.+++.| +. +++|+++|+.+++..+ +.||+|+
T Consensus 2 ~~~~~iLDlGcG~-G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~-~~-ni~~~~~d~~~l~~~~~~~~D~I~ 78 (152)
T PF13847_consen 2 KSNKKILDLGCGT-GRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG-LD-NIEFIQGDIEDLPQELEEKFDIII 78 (152)
T ss_dssp TTTSEEEEET-TT-SHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT-ST-TEEEEESBTTCGCGCSSTTEEEEE
T ss_pred CCCCEEEEecCcC-cHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc-cc-ccceEEeehhccccccCCCeeEEE
Confidence 4689999999995 77778888546789999999999999999999999999 64 9999999999855212 6899999
Q ss_pred eccccCChhhHHHHHHHHHhhcccCeEEEEEccc
Q 041205 209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAK 242 (535)
Q Consensus 209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~ 242 (535)
.....+...+...+++.+.+.|++||++++.+..
T Consensus 79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9866544578899999999999999999998764
No 13
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.58 E-value=2.7e-14 Score=136.27 Aligned_cols=113 Identities=18% Similarity=0.210 Sum_probs=94.9
Q ss_pred HhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCc
Q 041205 125 ENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEY 204 (535)
Q Consensus 125 ~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~F 204 (535)
..+.+.++++|||||||+ |..++.+++...++++|+|+|+++++++.|++.+...+ + ++++++++|+.+++...+.|
T Consensus 39 ~~l~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~~f 115 (231)
T TIGR02752 39 KRMNVQAGTSALDVCCGT-ADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-L-HNVELVHGNAMELPFDDNSF 115 (231)
T ss_pred HhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-C-CceEEEEechhcCCCCCCCc
Confidence 344567889999999996 66777888744577899999999999999999998887 5 68999999998876665679
Q ss_pred ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
|+|++...++..+++.++++++.++|+|||.+++.+
T Consensus 116 D~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 116 DYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred cEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence 999987655555788999999999999999998765
No 14
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.58 E-value=9.8e-15 Score=117.82 Aligned_cols=95 Identities=21% Similarity=0.307 Sum_probs=80.7
Q ss_pred EEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccccCC
Q 041205 136 AFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAGN 215 (535)
Q Consensus 136 LeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALVgm 215 (535)
|||||| .|.++..++++ ++.+|+|+|+++++++.+++.....+ +.++++|+.+++.+.+.||+|+.....++
T Consensus 1 LdiG~G-~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~-----~~~~~~d~~~l~~~~~sfD~v~~~~~~~~ 72 (95)
T PF08241_consen 1 LDIGCG-TGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEG-----VSFRQGDAEDLPFPDNSFDVVFSNSVLHH 72 (95)
T ss_dssp EEET-T-TSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTST-----EEEEESBTTSSSS-TT-EEEEEEESHGGG
T ss_pred CEecCc-CCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccC-----chheeehHHhCccccccccccccccceee
Confidence 799999 48888888883 79999999999999999999887655 45999999999888888999998777655
Q ss_pred hhhHHHHHHHHHhhcccCeEEEE
Q 041205 216 EEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 216 ~edK~~VL~eL~rvLKPGGvLVv 238 (535)
.++..++++++.|+|||||++++
T Consensus 73 ~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 73 LEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccCHHHHHHHHHHHcCcCeEEeC
Confidence 58999999999999999999985
No 15
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.57 E-value=3.3e-14 Score=141.02 Aligned_cols=112 Identities=13% Similarity=0.136 Sum_probs=91.8
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh--cCCcCCCeEEEEccccccccCCCCc
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSS--DDEIEKRMKFLTCDIMEVKEKLGEY 204 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~--lG~Ls~rI~Fi~GDA~el~~dL~~F 204 (535)
..+.++.+|||||||+ |..++.++++..+.++|+|+|+|++|++.|++.... .+ ...+++|+++|+.+++.+.+.|
T Consensus 69 ~~~~~~~~VLDlGcGt-G~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~-~~~~i~~~~~d~~~lp~~~~sf 146 (261)
T PLN02233 69 SGAKMGDRVLDLCCGS-GDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS-CYKNIEWIEGDATDLPFDDCYF 146 (261)
T ss_pred hCCCCCCEEEEECCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc-cCCCeEEEEcccccCCCCCCCE
Confidence 3456789999999997 666777877434568999999999999999877542 22 2368999999999888877789
Q ss_pred ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
|+|++....+..+++..++.+++|+|||||.+++-+
T Consensus 147 D~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 147 DAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred eEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence 999987665556789999999999999999998865
No 16
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.53 E-value=6.5e-14 Score=133.79 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=88.9
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
.++.+|||||||+ |..++.+|+ ..++++|++||+++++++.|++.++..| +. +++|+++|+.+... .+.||+|++
T Consensus 44 ~~g~~VLDiGcGt-G~~al~la~-~~~~~~V~giD~s~~~l~~A~~~~~~~~-l~-~i~~~~~d~~~~~~-~~~fDlV~~ 118 (187)
T PRK00107 44 PGGERVLDVGSGA-GFPGIPLAI-ARPELKVTLVDSLGKKIAFLREVAAELG-LK-NVTVVHGRAEEFGQ-EEKFDVVTS 118 (187)
T ss_pred CCCCeEEEEcCCC-CHHHHHHHH-HCCCCeEEEEeCcHHHHHHHHHHHHHcC-CC-CEEEEeccHhhCCC-CCCccEEEE
Confidence 4589999999996 788888887 4678999999999999999999999999 64 49999999988655 457999998
Q ss_pred ccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
.+. .+...+++.+++.|+|||++++-..
T Consensus 119 ~~~----~~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 119 RAV----ASLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred ccc----cCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 753 3678999999999999999988643
No 17
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.53 E-value=7.3e-14 Score=137.33 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=94.1
Q ss_pred CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205 128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI 207 (535)
Q Consensus 128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV 207 (535)
.+.++++|||||||+ |..++.+++...++++|+++|+++++++.|++++...| + .+++|+.+|+.+++...+.||+|
T Consensus 74 ~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g-~-~~v~~~~~d~~~l~~~~~~fD~V 150 (272)
T PRK11873 74 ELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG-Y-TNVEFRLGEIEALPVADNSVDVI 150 (272)
T ss_pred cCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC-C-CCEEEEEcchhhCCCCCCceeEE
Confidence 357899999999997 77777777744556789999999999999999999988 5 58999999998877665679999
Q ss_pred EeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+.....++.+++..++++++++|||||+|++.+
T Consensus 151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 151 ISNCVINLSPDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred EEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 987665556789999999999999999999865
No 18
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.52 E-value=1.4e-13 Score=134.86 Aligned_cols=126 Identities=15% Similarity=0.185 Sum_probs=96.4
Q ss_pred CccchhhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhc-CCCcEEEEEeCChhHHHHHHHHHhhcCCcC
Q 041205 106 FPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQH-MKSTHFDNIDIDETANNLARRIVSSDDEIE 184 (535)
Q Consensus 106 FpYy~NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~-l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls 184 (535)
.|.|+....++..=. ... +.++.+|||||||+ |..++.+++.. .++++|+|||+|++|++.|++.+...| ..
T Consensus 36 ~p~y~~~~~~~~~~~---~~~--~~~~~~vLDlGcGt-G~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~-~~ 108 (247)
T PRK15451 36 VPGYSNIISMIGMLA---ERF--VQPGTQVYDLGCSL-GAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK-AP 108 (247)
T ss_pred CCChHHHHHHHHHHH---HHh--CCCCCEEEEEcccC-CHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CC
Confidence 466665555543211 111 25789999999996 66666676632 578999999999999999999999888 66
Q ss_pred CCeEEEEccccccccCCCCcceEEeccccC-C-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 185 KRMKFLTCDIMEVKEKLGEYDCIILAALAG-N-EEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 185 ~rI~Fi~GDA~el~~dL~~FDvVfiaALVg-m-~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
.+++|+++|+.+++. ..||+|++....+ + .+++..+++++++.|+|||.|++.+
T Consensus 109 ~~v~~~~~d~~~~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 109 TPVDVIEGDIRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred CCeEEEeCChhhCCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 799999999987654 4699988754443 3 4568899999999999999998865
No 19
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.52 E-value=1.2e-13 Score=135.22 Aligned_cols=105 Identities=18% Similarity=0.276 Sum_probs=90.2
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc-CCCCcceEE
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-KLGEYDCII 208 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-dL~~FDvVf 208 (535)
.++.+|||||||+ |..++.+|+ .|.+|+++|+++++++.|++.+...| +..+++|+++|+.++.. ..+.||+|+
T Consensus 43 ~~~~~vLDiGcG~-G~~a~~la~---~g~~v~~vD~s~~~l~~a~~~~~~~g-~~~~v~~~~~d~~~l~~~~~~~fD~V~ 117 (255)
T PRK11036 43 PRPLRVLDAGGGE-GQTAIKLAE---LGHQVILCDLSAEMIQRAKQAAEAKG-VSDNMQFIHCAAQDIAQHLETPVDLIL 117 (255)
T ss_pred CCCCEEEEeCCCc-hHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHhcC-CccceEEEEcCHHHHhhhcCCCCCEEE
Confidence 5678999999996 677888888 47899999999999999999999988 67899999999987642 345799999
Q ss_pred eccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205 209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
+....+..+++..++.++.++|||||+|++-
T Consensus 118 ~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 118 FHAVLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred ehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 8766554567889999999999999999764
No 20
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.51 E-value=2.8e-13 Score=128.21 Aligned_cols=101 Identities=18% Similarity=0.229 Sum_probs=86.7
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA 210 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia 210 (535)
++++|||||||+ |+.++.+|. ..++++|++||+|+++++.+++++++.| + ++++|+++|+.++. ..+.||+|+..
T Consensus 42 ~~~~vLDiGcGt-G~~s~~la~-~~~~~~V~~iD~s~~~~~~a~~~~~~~~-~-~~i~~i~~d~~~~~-~~~~fD~I~s~ 116 (181)
T TIGR00138 42 DGKKVIDIGSGA-GFPGIPLAI-ARPELKLTLLESNHKKVAFLREVKAELG-L-NNVEIVNGRAEDFQ-HEEQFDVITSR 116 (181)
T ss_pred CCCeEEEecCCC-CccHHHHHH-HCCCCeEEEEeCcHHHHHHHHHHHHHhC-C-CCeEEEecchhhcc-ccCCccEEEeh
Confidence 489999999996 788888886 4678899999999999999999999998 5 46999999998763 34679999987
Q ss_pred cccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 211 ALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 211 ALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+ + .+...+++.+.+.|+|||++++..
T Consensus 117 ~-~---~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 117 A-L---ASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred h-h---hCHHHHHHHHHHhcCCCCEEEEEc
Confidence 6 4 367789999999999999999864
No 21
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.51 E-value=4.3e-13 Score=114.12 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=87.9
Q ss_pred HHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc-cCCC
Q 041205 124 IENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK-EKLG 202 (535)
Q Consensus 124 ~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~-~dL~ 202 (535)
...+.+.++++|+|||||+ |..++.+++ ..++++|+++|+++.+++.|++.++..+ + .+++|+.+|+.+.. ....
T Consensus 12 ~~~~~~~~~~~vldlG~G~-G~~~~~l~~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 87 (124)
T TIGR02469 12 LSKLRLRPGDVLWDIGAGS-GSITIEAAR-LVPNGRVYAIERNPEALRLIERNARRFG-V-SNIVIVEGDAPEALEDSLP 87 (124)
T ss_pred HHHcCCCCCCEEEEeCCCC-CHHHHHHHH-HCCCceEEEEcCCHHHHHHHHHHHHHhC-C-CceEEEeccccccChhhcC
Confidence 3344556788999999997 666777777 4677999999999999999999999888 4 47999999986533 2235
Q ss_pred CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205 203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
.||+|++.... ....++++++++.|+|||.|++.
T Consensus 88 ~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 88 EPDRVFIGGSG---GLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CCCEEEECCcc---hhHHHHHHHHHHHcCCCCEEEEE
Confidence 79999987544 45679999999999999999874
No 22
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.50 E-value=3.6e-13 Score=130.29 Aligned_cols=108 Identities=17% Similarity=0.169 Sum_probs=89.3
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhc-CCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQH-MKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII 208 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~-l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf 208 (535)
.++.+|||||||+ |..++.++++. .|+++|+|+|+++++++.|++.++..+ ...+++|+++|+.+++. ..||+|+
T Consensus 52 ~~~~~iLDlGcG~-G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~-~~~~v~~~~~d~~~~~~--~~~d~v~ 127 (239)
T TIGR00740 52 TPDSNVYDLGCSR-GAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH-SEIPVEILCNDIRHVEI--KNASMVI 127 (239)
T ss_pred CCCCEEEEecCCC-CHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECChhhCCC--CCCCEEe
Confidence 4778999999997 66667777743 378999999999999999999998877 56789999999987653 4689888
Q ss_pred eccccCC--hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 209 LAALAGN--EEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 209 iaALVgm--~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
+....+. .+++..+++++++.|+|||.|++.+.
T Consensus 128 ~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 128 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred eecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 7655544 45789999999999999999999763
No 23
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.50 E-value=3e-13 Score=129.32 Aligned_cols=113 Identities=19% Similarity=0.194 Sum_probs=89.0
Q ss_pred HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205 121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK 200 (535)
Q Consensus 121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d 200 (535)
..+...+.+.++++|||||||+ |+.+..+|+...++++|+++|+++++++.|++++++.| +.++++|+++|+.+....
T Consensus 62 ~~~~~~l~~~~~~~VLDiG~Gs-G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~-~~~~v~~~~~d~~~~~~~ 139 (205)
T PRK13944 62 AMMCELIEPRPGMKILEVGTGS-GYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG-YWGVVEVYHGDGKRGLEK 139 (205)
T ss_pred HHHHHhcCCCCCCEEEEECcCc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCCcEEEEECCcccCCcc
Confidence 3444445557889999999996 77777887743346799999999999999999999998 667899999999875555
Q ss_pred CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 201 LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 201 L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
.+.||+|++.+... .+..++.+.|+|||+|++-..
T Consensus 140 ~~~fD~Ii~~~~~~------~~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 140 HAPFDAIIVTAAAS------TIPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred CCCccEEEEccCcc------hhhHHHHHhcCcCcEEEEEEc
Confidence 56799999886652 233577889999999988443
No 24
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.49 E-value=3.1e-13 Score=134.21 Aligned_cols=113 Identities=22% Similarity=0.314 Sum_probs=91.7
Q ss_pred HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205 121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK 200 (535)
Q Consensus 121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d 200 (535)
..+...+.+.++.+|||||||+ |..+..+|+. .+++|+|+|+++++++.|++.+.. . .++.|+++|+.+.+.+
T Consensus 42 ~~~l~~l~l~~~~~VLDiGcG~-G~~a~~la~~--~~~~v~giD~s~~~~~~a~~~~~~-~---~~i~~~~~D~~~~~~~ 114 (263)
T PTZ00098 42 TKILSDIELNENSKVLDIGSGL-GGGCKYINEK--YGAHVHGVDICEKMVNIAKLRNSD-K---NKIEFEANDILKKDFP 114 (263)
T ss_pred HHHHHhCCCCCCCEEEEEcCCC-ChhhHHHHhh--cCCEEEEEECCHHHHHHHHHHcCc-C---CceEEEECCcccCCCC
Confidence 3444445678899999999996 5666777773 478999999999999999987654 2 5799999999877666
Q ss_pred CCCcceEEec-cccCC-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 201 LGEYDCIILA-ALAGN-EEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 201 L~~FDvVfia-ALVgm-~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
.+.||+|+.. ++.++ ..++..++++++++|||||.|++.+
T Consensus 115 ~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 115 ENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred CCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 6789999984 44455 4589999999999999999999865
No 25
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.48 E-value=1.2e-12 Score=123.37 Aligned_cols=109 Identities=19% Similarity=0.221 Sum_probs=90.3
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCC-CcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMK-STHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI 207 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~-Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV 207 (535)
..++.+|||||||+ |..++.++.. .+ ..+|+++|+++.+++.+++.+...+ +..+++|+.+|+.+.+...+.||+|
T Consensus 49 ~~~~~~vldiG~G~-G~~~~~l~~~-~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~D~I 125 (239)
T PRK00216 49 VRPGDKVLDLACGT-GDLAIALAKA-VGKTGEVVGLDFSEGMLAVGREKLRDLG-LSGNVEFVQGDAEALPFPDNSFDAV 125 (239)
T ss_pred CCCCCeEEEeCCCC-CHHHHHHHHH-cCCCCeEEEEeCCHHHHHHHHHhhcccc-cccCeEEEecccccCCCCCCCccEE
Confidence 35678999999997 5666677773 34 6899999999999999999988766 5678999999998766555679999
Q ss_pred EeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
++...++...+...++..+.+.|+|||.+++.+
T Consensus 126 ~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 126 TIAFGLRNVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred EEecccccCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 987655556788999999999999999988754
No 26
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.47 E-value=1.9e-13 Score=140.68 Aligned_cols=107 Identities=14% Similarity=0.193 Sum_probs=91.4
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
.++.+|||||||+ |..+..+|+ .|++|+|||+++++++.|++.++..+ ...+++|+++|+.+++...+.||+|+.
T Consensus 130 ~~g~~ILDIGCG~-G~~s~~La~---~g~~V~GID~s~~~i~~Ar~~~~~~~-~~~~i~~~~~dae~l~~~~~~FD~Vi~ 204 (322)
T PLN02396 130 FEGLKFIDIGCGG-GLLSEPLAR---MGATVTGVDAVDKNVKIARLHADMDP-VTSTIEYLCTTAEKLADEGRKFDAVLS 204 (322)
T ss_pred CCCCEEEEeeCCC-CHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHHHhcC-cccceeEEecCHHHhhhccCCCCEEEE
Confidence 4578999999996 666778887 68999999999999999999877666 557899999999887766567999998
Q ss_pred ccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
...++...+...++.++.++|||||.+++-+.
T Consensus 205 ~~vLeHv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 205 LEVIEHVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred hhHHHhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 76665557889999999999999999998754
No 27
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.47 E-value=3.6e-13 Score=131.74 Aligned_cols=103 Identities=19% Similarity=0.206 Sum_probs=85.0
Q ss_pred hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcc
Q 041205 126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYD 205 (535)
Q Consensus 126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FD 205 (535)
.+...++.+|||||||+ |..+..+++. .|+++|+|+|+++.+++.|++. +++|+++|+.++. ..+.||
T Consensus 24 ~l~~~~~~~vLDlGcG~-G~~~~~l~~~-~p~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~-~~~~fD 91 (255)
T PRK14103 24 RVGAERARRVVDLGCGP-GNLTRYLARR-WPGAVIEALDSSPEMVAAARER---------GVDARTGDVRDWK-PKPDTD 91 (255)
T ss_pred hCCCCCCCEEEEEcCCC-CHHHHHHHHH-CCCCEEEEEECCHHHHHHHHhc---------CCcEEEcChhhCC-CCCCce
Confidence 34457889999999997 5566777773 5789999999999999999752 3689999998764 446799
Q ss_pred eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+|++...+++.+++..++.+++++|||||.+++-.
T Consensus 92 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 92 VVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 99998777666788999999999999999998853
No 28
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.46 E-value=5.4e-13 Score=134.32 Aligned_cols=127 Identities=20% Similarity=0.329 Sum_probs=90.4
Q ss_pred ccchhhHH-hHHHH---HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC
Q 041205 107 PYYENYVK-LAKLE---YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE 182 (535)
Q Consensus 107 pYy~NYv~-LirlE---~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~ 182 (535)
.||++-.. |-+-+ +..+...+.+.++++||||||| -|..++.+|++ .|++|+||.+|++..+.|++.+++.|
T Consensus 34 ~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~--~g~~v~gitlS~~Q~~~a~~~~~~~g- 109 (273)
T PF02353_consen 34 AYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCG-WGGLAIYAAER--YGCHVTGITLSEEQAEYARERIREAG- 109 (273)
T ss_dssp ---SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-T-TSHHHHHHHHH--H--EEEEEES-HHHHHHHHHHHHCST-
T ss_pred eecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHH--cCcEEEEEECCHHHHHHHHHHHHhcC-
Confidence 47766433 22222 3444445578999999999999 68888999995 38999999999999999999999999
Q ss_pred cCCCeEEEEccccccccCCCCcceEEecccc-CC-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 183 IEKRMKFLTCDIMEVKEKLGEYDCIILAALA-GN-EEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 183 Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALV-gm-~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+.+++++..+|..+++. .||.|+.-... |+ .+++..+++.+.+.|+|||++++..
T Consensus 110 l~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 110 LEDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp SSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred CCCceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 89999999999876543 89998854333 55 6789999999999999999998854
No 29
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.46 E-value=6.4e-13 Score=128.00 Aligned_cols=110 Identities=18% Similarity=0.202 Sum_probs=88.0
Q ss_pred HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205 121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK 200 (535)
Q Consensus 121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d 200 (535)
..+...+.+.++++|||||||+ |+.+.++|+...++++|+++|+++++++.|++.++..| + .+++|+++|+.+....
T Consensus 66 ~~~~~~l~~~~g~~VLdIG~Gs-G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g-~-~~v~~~~gd~~~~~~~ 142 (212)
T PRK13942 66 AIMCELLDLKEGMKVLEIGTGS-GYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG-Y-DNVEVIVGDGTLGYEE 142 (212)
T ss_pred HHHHHHcCCCCcCEEEEECCcc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-C-CCeEEEECCcccCCCc
Confidence 3344445668899999999996 77778888743456899999999999999999999999 5 6899999999765555
Q ss_pred CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205 201 LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 201 L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
.+.||+||+.+.+. .+...+.+.|+|||++++-
T Consensus 143 ~~~fD~I~~~~~~~------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 143 NAPYDRIYVTAAGP------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCCcCEEEECCCcc------cchHHHHHhhCCCcEEEEE
Confidence 56799999886652 2345677789999999884
No 30
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.46 E-value=6.6e-13 Score=127.23 Aligned_cols=110 Identities=22% Similarity=0.224 Sum_probs=87.8
Q ss_pred HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205 121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK 200 (535)
Q Consensus 121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d 200 (535)
..+...+.+.++.+|||||||+ |+.++.+|+...++++|++||+++++++.|++++++.| + ++++|+++|+.+....
T Consensus 67 ~~~~~~l~~~~~~~VLDiG~Gs-G~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g-~-~~v~~~~~d~~~~~~~ 143 (215)
T TIGR00080 67 AMMTELLELKPGMKVLEIGTGS-GYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG-L-DNVIVIVGDGTQGWEP 143 (215)
T ss_pred HHHHHHhCCCCcCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC-C-CCeEEEECCcccCCcc
Confidence 3444445668899999999996 67777888843446789999999999999999999999 5 6899999999765544
Q ss_pred CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205 201 LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 201 L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
...||+|++++.. ..+.+.+.+.|+|||+|++-
T Consensus 144 ~~~fD~Ii~~~~~------~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 144 LAPYDRIYVTAAG------PKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred cCCCCEEEEcCCc------ccccHHHHHhcCcCcEEEEE
Confidence 5679999987544 33456688899999999874
No 31
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.46 E-value=8.5e-13 Score=125.00 Aligned_cols=123 Identities=18% Similarity=0.251 Sum_probs=98.5
Q ss_pred HHhHHHHHHHHH-HhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE
Q 041205 113 VKLAKLEYGALI-ENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLT 191 (535)
Q Consensus 113 v~LirlE~~lL~-~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~ 191 (535)
.++++.|...+. ..+.+.++.+|||+|||+ |.-++.+|+...++++|+++|+++++++.|+++++..| +.+++++++
T Consensus 21 ~~~t~~~~r~~~l~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g-~~~~v~~~~ 98 (198)
T PRK00377 21 IPMTKEEIRALALSKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG-VLNNIVLIK 98 (198)
T ss_pred CCCCHHHHHHHHHHHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC-CCCCeEEEE
Confidence 346777765553 345678899999999997 66667777644467899999999999999999999998 668999999
Q ss_pred ccccccccCC-CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 192 CDIMEVKEKL-GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 192 GDA~el~~dL-~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+|+.+..... +.||.||+.... .+...+++.+.+.|+|||++++..
T Consensus 99 ~d~~~~l~~~~~~~D~V~~~~~~---~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 99 GEAPEILFTINEKFDRIFIGGGS---EKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred echhhhHhhcCCCCCEEEECCCc---ccHHHHHHHHHHHcCCCcEEEEEe
Confidence 9997754443 569999985433 467889999999999999998854
No 32
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.45 E-value=9.1e-13 Score=128.22 Aligned_cols=110 Identities=19% Similarity=0.257 Sum_probs=88.5
Q ss_pred HHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC
Q 041205 122 ALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL 201 (535)
Q Consensus 122 lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL 201 (535)
.+...+.+.++++|||||||+ |..+..+++. .++++|+|||+++.+++.|++.+ .+++|+.+|+.++. ..
T Consensus 22 ~ll~~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~~~~v~gvD~s~~~i~~a~~~~-------~~~~~~~~d~~~~~-~~ 91 (258)
T PRK01683 22 DLLARVPLENPRYVVDLGCGP-GNSTELLVER-WPAARITGIDSSPAMLAEARSRL-------PDCQFVEADIASWQ-PP 91 (258)
T ss_pred HHHhhCCCcCCCEEEEEcccC-CHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHhC-------CCCeEEECchhccC-CC
Confidence 334445557889999999997 5556777773 67899999999999999998763 25789999987654 33
Q ss_pred CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
..||+|+.....++..++..++.++.+.|+|||.+++...
T Consensus 92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 92 QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 5799999887776667889999999999999999988643
No 33
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.44 E-value=9.9e-13 Score=125.01 Aligned_cols=103 Identities=19% Similarity=0.295 Sum_probs=85.9
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII 208 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf 208 (535)
..++.+|||||||+ |..++.||+ .|.+|+|+|+|+++++.|++.++..| + .+++++++|+.+.+.+ +.||+|+
T Consensus 28 ~~~~~~vLDiGcG~-G~~a~~La~---~g~~V~gvD~S~~~i~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~-~~fD~I~ 100 (197)
T PRK11207 28 VVKPGKTLDLGCGN-GRNSLYLAA---NGFDVTAWDKNPMSIANLERIKAAEN-L-DNLHTAVVDLNNLTFD-GEYDFIL 100 (197)
T ss_pred cCCCCcEEEECCCC-CHHHHHHHH---CCCEEEEEeCCHHHHHHHHHHHHHcC-C-CcceEEecChhhCCcC-CCcCEEE
Confidence 45679999999996 778899998 47899999999999999999999888 5 5699999998765443 4699999
Q ss_pred eccccCC--hhhHHHHHHHHHhhcccCeEEEE
Q 041205 209 LAALAGN--EEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 209 iaALVgm--~edK~~VL~eL~rvLKPGGvLVv 238 (535)
.....++ ..+...++..+.+.|+|||.+++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 101 STVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred EecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 7655443 45789999999999999998654
No 34
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.44 E-value=1.1e-12 Score=127.47 Aligned_cols=120 Identities=17% Similarity=0.192 Sum_probs=90.3
Q ss_pred hhhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEE
Q 041205 110 ENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKF 189 (535)
Q Consensus 110 ~NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~F 189 (535)
+.+..+-+.-...+...++..++.+|||||||++ ..+..+++ .+.+|+++|+|+++++.|++... .+.|
T Consensus 21 ~~~~~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G-~~~~~l~~---~~~~v~~~D~s~~~l~~a~~~~~-------~~~~ 89 (251)
T PRK10258 21 EQHAELQRQSADALLAMLPQRKFTHVLDAGCGPG-WMSRYWRE---RGSQVTALDLSPPMLAQARQKDA-------ADHY 89 (251)
T ss_pred hHHHHHHHHHHHHHHHhcCccCCCeEEEeeCCCC-HHHHHHHH---cCCeEEEEECCHHHHHHHHhhCC-------CCCE
Confidence 3333333333344444444356789999999985 44556666 57899999999999999987642 2468
Q ss_pred EEccccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 190 LTCDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 190 i~GDA~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+++|+.+++...+.||+|+.....++..+...++.++.++|+|||.+++-.
T Consensus 90 ~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 90 LAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred EEcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 999998877666679999987666556788999999999999999999865
No 35
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.43 E-value=9.2e-13 Score=125.05 Aligned_cols=106 Identities=14% Similarity=0.164 Sum_probs=84.5
Q ss_pred hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcc
Q 041205 126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYD 205 (535)
Q Consensus 126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FD 205 (535)
.+...++.+|||||||. |..++.+|+ .|.+|+|+|+|+.+++.+++.++..| + ++.+..+|+...+.+ +.||
T Consensus 25 ~~~~~~~~~vLDiGcG~-G~~a~~la~---~g~~V~~iD~s~~~l~~a~~~~~~~~-~--~v~~~~~d~~~~~~~-~~fD 96 (195)
T TIGR00477 25 AVKTVAPCKTLDLGCGQ-GRNSLYLSL---AGYDVRAWDHNPASIASVLDMKAREN-L--PLRTDAYDINAAALN-EDYD 96 (195)
T ss_pred HhccCCCCcEEEeCCCC-CHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHHHhC-C--CceeEeccchhcccc-CCCC
Confidence 34445678999999995 888899988 47899999999999999999998888 4 388888887543332 4699
Q ss_pred eEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEE
Q 041205 206 CIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 206 vVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
+|+.....+. .++...+++.+++.|+|||++++-
T Consensus 97 ~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 97 FIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 9997644433 467789999999999999985543
No 36
>PRK08317 hypothetical protein; Provisional
Probab=99.43 E-value=1.4e-12 Score=122.05 Aligned_cols=112 Identities=21% Similarity=0.234 Sum_probs=91.1
Q ss_pred hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcc
Q 041205 126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYD 205 (535)
Q Consensus 126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FD 205 (535)
.+.+.++++|||||||+ |..++.++.++.++++|+|+|+++.+++.|++..... ..+++|+.+|+.+.+...+.||
T Consensus 14 ~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~---~~~~~~~~~d~~~~~~~~~~~D 89 (241)
T PRK08317 14 LLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL---GPNVEFVRGDADGLPFPDGSFD 89 (241)
T ss_pred HcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC---CCceEEEecccccCCCCCCCce
Confidence 34557889999999997 6666777774337789999999999999999984333 3689999999987666556799
Q ss_pred eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
+|+.....+...+...+++++.+.|+|||.+++-..
T Consensus 90 ~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 90 AVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred EEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 999876654457889999999999999999988654
No 37
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.43 E-value=8.1e-13 Score=125.58 Aligned_cols=104 Identities=18% Similarity=0.270 Sum_probs=87.9
Q ss_pred CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccc
Q 041205 133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAAL 212 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaAL 212 (535)
++|||||||. |..++.+|+ .+++++|+|+|+|+++++.|++.+...| +..+++|+.+|+.+.+.+ +.||+|+....
T Consensus 1 ~~vLDiGcG~-G~~~~~la~-~~~~~~v~gid~s~~~~~~a~~~~~~~g-l~~~i~~~~~d~~~~~~~-~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGY-GSDLIDLAE-RHPHLQLHGYTISPEQAEVGRERIRALG-LQGRIRIFYRDSAKDPFP-DTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCC-CHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHhcC-CCcceEEEecccccCCCC-CCCCEeehHHH
Confidence 4899999996 566677877 4678999999999999999999999999 788999999998654432 46999997655
Q ss_pred cCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 213 AGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 213 Vgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
.+...++..+++.+.++|+|||.+++.+
T Consensus 77 l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 77 IHHIKDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred HHhCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 5445788999999999999999999865
No 38
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.41 E-value=2e-12 Score=136.86 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=92.7
Q ss_pred HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205 121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK 200 (535)
Q Consensus 121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d 200 (535)
..+...+.+.++.+|||||||+ |..++.+|++ .+++|+|+|+|+++++.|++... + ...+++|+++|+.+.+.+
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~--~~~~v~gvDiS~~~l~~A~~~~~--~-~~~~v~~~~~d~~~~~~~ 329 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGI-GGGDFYMAEN--FDVHVVGIDLSVNMISFALERAI--G-RKCSVEFEVADCTKKTYP 329 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccC-CHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHhh--c-CCCceEEEEcCcccCCCC
Confidence 3344444557889999999997 5667888883 38899999999999999998875 3 346899999999876655
Q ss_pred CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 201 LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 201 L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
.+.||+|+....+...+++..++.+++++|+|||.|++.+
T Consensus 330 ~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 330 DNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred CCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 5679999987555445789999999999999999999865
No 39
>PRK04457 spermidine synthase; Provisional
Probab=99.41 E-value=1.3e-12 Score=130.22 Aligned_cols=149 Identities=14% Similarity=0.131 Sum_probs=103.7
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-CCcceEE
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-GEYDCII 208 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-~~FDvVf 208 (535)
.++++||+|||| .|..+.++++ +.|+++|++||+|+++++.|++.+...+ ..++++++++|+.+..... +.||+|+
T Consensus 65 ~~~~~vL~IG~G-~G~l~~~l~~-~~p~~~v~~VEidp~vi~~A~~~f~~~~-~~~rv~v~~~Da~~~l~~~~~~yD~I~ 141 (262)
T PRK04457 65 PRPQHILQIGLG-GGSLAKFIYT-YLPDTRQTAVEINPQVIAVARNHFELPE-NGERFEVIEADGAEYIAVHRHSTDVIL 141 (262)
T ss_pred CCCCEEEEECCC-HhHHHHHHHH-hCCCCeEEEEECCHHHHHHHHHHcCCCC-CCCceEEEECCHHHHHHhCCCCCCEEE
Confidence 568999999999 5777787877 5789999999999999999999987655 3579999999998765443 4699999
Q ss_pred eccccC--Ch--hhHHHHHHHHHhhcccCeEEEEEcccccccccCCCCcccc-CCcEEEEEEcCCCcceeeeEEEecCCC
Q 041205 209 LAALAG--NE--EEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEHEL-FDFKVLSIFHPTNDVINSVVLLQLPKD 283 (535)
Q Consensus 209 iaALVg--m~--edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdpdl-~GFeil~v~hP~~eVINSVVvARK~~~ 283 (535)
+++..+ +. -...++++.+.++|+|||++++.-... .-.++.+-..+ .-|.-....-|...-.|.++++.|..|
T Consensus 142 ~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~--~~~~~~~l~~l~~~F~~~~~~~~~~~~~N~v~~a~~~~~ 219 (262)
T PRK04457 142 VDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR--DKRYDRYLERLESSFEGRVLELPAESHGNVAVFAFKSAP 219 (262)
T ss_pred EeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC--chhHHHHHHHHHHhcCCcEEEEecCCCccEEEEEECCCC
Confidence 986542 11 123799999999999999999853211 11111110011 235422222233333488899987543
No 40
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.41 E-value=3.5e-12 Score=119.26 Aligned_cols=117 Identities=20% Similarity=0.209 Sum_probs=91.9
Q ss_pred hHHHHHHHHH-HhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcc
Q 041205 115 LAKLEYGALI-ENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD 193 (535)
Q Consensus 115 LirlE~~lL~-~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GD 193 (535)
+++.+...+. ..+.+.++.+|||||||+ |..++.+++ ..++++|+++|+++++++.|++++++.+ + .+++|+++|
T Consensus 14 ~~~~~~r~~~~~~l~~~~~~~vLDiG~G~-G~~~~~la~-~~~~~~v~~vD~s~~~~~~a~~n~~~~~-~-~~i~~~~~d 89 (187)
T PRK08287 14 MTKEEVRALALSKLELHRAKHLIDVGAGT-GSVSIEAAL-QFPSLQVTAIERNPDALRLIKENRQRFG-C-GNIDIIPGE 89 (187)
T ss_pred CchHHHHHHHHHhcCCCCCCEEEEECCcC-CHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHhC-C-CCeEEEecC
Confidence 4555544332 334557889999999996 777788887 3678999999999999999999999888 5 579999999
Q ss_pred ccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 194 IMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 194 A~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+.. .. .+.||+||++...+ ....+++.+.+.|+|||++++..
T Consensus 90 ~~~-~~-~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 90 API-EL-PGKADAIFIGGSGG---NLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred chh-hc-CcCCCEEEECCCcc---CHHHHHHHHHHhcCCCeEEEEEE
Confidence 742 11 24699999875543 46779999999999999998854
No 41
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.40 E-value=9.5e-13 Score=111.22 Aligned_cols=96 Identities=23% Similarity=0.369 Sum_probs=76.1
Q ss_pred EEEEccCCChhhHHHHHhhcC--CCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccc
Q 041205 135 VAFVGSGPMPLTSIILASQHM--KSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAAL 212 (535)
Q Consensus 135 VLeIGSGplPlTAI~LAk~~l--~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaAL 212 (535)
|||+|||+ |.....+++.+- +..+++|+|+|+++++.+++.....| . +++|+++|+.+++...+.||+|+....
T Consensus 1 ILDlgcG~-G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~-~--~~~~~~~D~~~l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGT-GRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG-P--KVRFVQADARDLPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TT-SHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT-T--TSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred CEEeecCC-cHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC-C--ceEEEECCHhHCcccCCCeeEEEEcCC
Confidence 79999997 555566666431 34899999999999999999999877 4 899999999998877778999999433
Q ss_pred --cCC-hhhHHHHHHHHHhhcccCe
Q 041205 213 --AGN-EEEKAKILGHIRKYMKEGG 234 (535)
Q Consensus 213 --Vgm-~edK~~VL~eL~rvLKPGG 234 (535)
.++ .++-..+++++.++++|||
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 345 7788999999999999998
No 42
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.40 E-value=3.7e-12 Score=120.08 Aligned_cols=121 Identities=21% Similarity=0.228 Sum_probs=95.9
Q ss_pred HHhHHHHHHH-HHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE
Q 041205 113 VKLAKLEYGA-LIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLT 191 (535)
Q Consensus 113 v~LirlE~~l-L~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~ 191 (535)
.++++.|... +...+.+.++.+|||||||+ |..++.+|+ ..++++|++||+|+++++.|++++++.| + .+++|++
T Consensus 21 ~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~-G~~~~~la~-~~~~~~V~~vD~s~~~~~~a~~n~~~~~-~-~~v~~~~ 96 (196)
T PRK07402 21 IPLTKREVRLLLISQLRLEPDSVLWDIGAGT-GTIPVEAGL-LCPKGRVIAIERDEEVVNLIRRNCDRFG-V-KNVEVIE 96 (196)
T ss_pred CCCCHHHHHHHHHHhcCCCCCCEEEEeCCCC-CHHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CCeEEEE
Confidence 3467777664 45566667889999999996 556677776 4678999999999999999999999988 5 5799999
Q ss_pred ccccccccCC-CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 192 CDIMEVKEKL-GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 192 GDA~el~~dL-~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
+|+.+..... ..+|.|+++.. .+...+++.+.++|+|||.+++...
T Consensus 97 ~d~~~~~~~~~~~~d~v~~~~~----~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 97 GSAPECLAQLAPAPDRVCIEGG----RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CchHHHHhhCCCCCCEEEEECC----cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 9987543333 34788888643 2567899999999999999998764
No 43
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.39 E-value=9.4e-12 Score=116.23 Aligned_cols=106 Identities=20% Similarity=0.233 Sum_probs=86.2
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI 207 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV 207 (535)
..++.+|||+|||+ |..+..+++. .+. ++++++|+++.+++.+++... . ..+++|+.+|+.+.+...+.||+|
T Consensus 37 ~~~~~~vldiG~G~-G~~~~~~~~~-~~~~~~~~~iD~~~~~~~~~~~~~~--~--~~~i~~~~~d~~~~~~~~~~~D~i 110 (223)
T TIGR01934 37 VFKGQKVLDVACGT-GDLAIELAKS-APDRGKVTGVDFSSEMLEVAKKKSE--L--PLNIEFIQADAEALPFEDNSFDAV 110 (223)
T ss_pred cCCCCeEEEeCCCC-ChhHHHHHHh-cCCCceEEEEECCHHHHHHHHHHhc--c--CCCceEEecchhcCCCCCCcEEEE
Confidence 35789999999997 5555666663 443 799999999999999998876 2 258999999998877655679999
Q ss_pred EeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
++....+..++...+++.+.+.|+|||++++.+
T Consensus 111 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 111 TIAFGLRNVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred EEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 986555545778899999999999999998754
No 44
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.38 E-value=2.7e-12 Score=127.20 Aligned_cols=117 Identities=15% Similarity=0.244 Sum_probs=102.4
Q ss_pred HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205 120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE 199 (535)
Q Consensus 120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~ 199 (535)
.+.+..+..+..+++++|||.- .|||++.+|....++++|+++|+|++..+++.++++.+| +.+.|+|++|++.+.+.
T Consensus 62 g~fl~~li~~~~ak~~lelGvf-TGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag-v~~KI~~i~g~a~esLd 139 (237)
T KOG1663|consen 62 GQFLQMLIRLLNAKRTLELGVF-TGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG-VDHKITFIEGPALESLD 139 (237)
T ss_pred HHHHHHHHHHhCCceEEEEecc-cCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc-ccceeeeeecchhhhHH
Confidence 3333334456779999999998 599999999977779999999999999999999999999 89999999999987554
Q ss_pred C------CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 200 K------LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 200 d------L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
. -+.||+||+|+.+ ..|...++++.+.+|+||+|++++.
T Consensus 140 ~l~~~~~~~tfDfaFvDadK---~nY~~y~e~~l~Llr~GGvi~~DNv 184 (237)
T KOG1663|consen 140 ELLADGESGTFDFAFVDADK---DNYSNYYERLLRLLRVGGVIVVDNV 184 (237)
T ss_pred HHHhcCCCCceeEEEEccch---HHHHHHHHHHHhhcccccEEEEecc
Confidence 2 2469999999998 7899999999999999999999995
No 45
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.37 E-value=1.3e-12 Score=130.07 Aligned_cols=105 Identities=18% Similarity=0.265 Sum_probs=93.0
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
-++.+||||||| +|.=+..||+ -|+.|+|+|+++++|+.|+..+...| + .|++.++++.++...-+.||+|.+
T Consensus 58 l~g~~vLDvGCG-gG~Lse~mAr---~Ga~VtgiD~se~~I~~Ak~ha~e~g-v--~i~y~~~~~edl~~~~~~FDvV~c 130 (243)
T COG2227 58 LPGLRVLDVGCG-GGILSEPLAR---LGASVTGIDASEKPIEVAKLHALESG-V--NIDYRQATVEDLASAGGQFDVVTC 130 (243)
T ss_pred CCCCeEEEecCC-ccHhhHHHHH---CCCeeEEecCChHHHHHHHHhhhhcc-c--cccchhhhHHHHHhcCCCccEEEE
Confidence 368999999999 8999999999 68999999999999999999999988 4 488999999887766568999998
Q ss_pred ccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
.-.+.+.++...++..+.+.+||||.+++.+.
T Consensus 131 mEVlEHv~dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 131 MEVLEHVPDPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred hhHHHccCCHHHHHHHHHHHcCCCcEEEEecc
Confidence 75554568999999999999999999999773
No 46
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.36 E-value=6.8e-12 Score=117.88 Aligned_cols=103 Identities=17% Similarity=0.238 Sum_probs=85.1
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
..+.+|||||||++ ..+..+++ ..+..+|+++|+++++++.+++... .+++|+++|+.+.+...+.||+|+.
T Consensus 33 ~~~~~vLDlG~G~G-~~~~~l~~-~~~~~~~~~~D~~~~~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD~vi~ 104 (240)
T TIGR02072 33 FIPASVLDIGCGTG-YLTRALLK-RFPQAEFIALDISAGMLAQAKTKLS------ENVQFICGDAEKLPLEDSSFDLIVS 104 (240)
T ss_pred CCCCeEEEECCCcc-HHHHHHHH-hCCCCcEEEEeChHHHHHHHHHhcC------CCCeEEecchhhCCCCCCceeEEEE
Confidence 34689999999974 55566666 4678889999999999999987543 3689999999887766667999998
Q ss_pred ccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
....++..+...++.++.+.|+|||.+++..
T Consensus 105 ~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 105 NLALQWCDDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred hhhhhhccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 8666656788999999999999999999865
No 47
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.36 E-value=4.9e-12 Score=107.90 Aligned_cols=104 Identities=22% Similarity=0.328 Sum_probs=84.8
Q ss_pred CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc--cCCCCcceEEe
Q 041205 132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK--EKLGEYDCIIL 209 (535)
Q Consensus 132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~--~dL~~FDvVfi 209 (535)
|.+|||+|||. |..++.+++. . ..+++|+|+|+.+++.|+..+...+ +.++++|+++|+.+.. ...+.||+|+.
T Consensus 1 g~~vlD~~~G~-G~~~~~~~~~-~-~~~~~gvdi~~~~~~~a~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 1 GDRVLDPGCGS-GTFLLAALRR-G-AARVTGVDIDPEAVELARRNLPRNG-LDDRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp TEEEEEETSTT-CHHHHHHHHH-C-TCEEEEEESSHHHHHHHHHHCHHCT-TTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CCEEEEcCcch-HHHHHHHHHH-C-CCeEEEEEECHHHHHHHHHHHHHcc-CCceEEEEECchhhchhhccCceeEEEEE
Confidence 46999999995 7777777773 3 6999999999999999999999999 7889999999998876 34467999998
Q ss_pred ccccCC--------hhhHHHHHHHHHhhcccCeEEEEE
Q 041205 210 AALAGN--------EEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 210 aALVgm--------~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
+--.+- ......+++++.+.|+|||++++-
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 744431 123578999999999999999874
No 48
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.35 E-value=1.1e-11 Score=119.45 Aligned_cols=120 Identities=23% Similarity=0.194 Sum_probs=103.6
Q ss_pred HHhHHHHHHHHHH-hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE
Q 041205 113 VKLAKLEYGALIE-NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLT 191 (535)
Q Consensus 113 v~LirlE~~lL~~-~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~ 191 (535)
.++++.|..++.. -+.+.++++++|||||++.+| +-+|. ..|.++|++||.|+++++..+++.+++| + ++++++.
T Consensus 15 ~p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~-iE~a~-~~p~~~v~AIe~~~~a~~~~~~N~~~fg-~-~n~~vv~ 90 (187)
T COG2242 15 GPMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSIT-IEWAL-AGPSGRVIAIERDEEALELIERNAARFG-V-DNLEVVE 90 (187)
T ss_pred CCCcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHH-HHHHH-hCCCceEEEEecCHHHHHHHHHHHHHhC-C-CcEEEEe
Confidence 5688999776554 346799999999999976555 55553 5799999999999999999999999999 4 8999999
Q ss_pred ccccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 192 CDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 192 GDA~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
|||-+.+.++..||.||+-... .-..+|+.+...|+|||+||+.-
T Consensus 91 g~Ap~~L~~~~~~daiFIGGg~----~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 91 GDAPEALPDLPSPDAIFIGGGG----NIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred ccchHhhcCCCCCCEEEECCCC----CHHHHHHHHHHHcCcCCeEEEEe
Confidence 9998888777789999998774 68999999999999999999965
No 49
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.34 E-value=1.1e-11 Score=124.61 Aligned_cols=112 Identities=21% Similarity=0.285 Sum_probs=91.1
Q ss_pred HHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCC
Q 041205 123 LIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLG 202 (535)
Q Consensus 123 L~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~ 202 (535)
+.......++.+|||||||+ |.-++.+++ .+|+.+++++|+ +++++.|++++++.| +.++|+|+.+|+.+.+ ..
T Consensus 141 l~~~~~~~~~~~vlDiG~G~-G~~~~~~~~-~~p~~~~~~~D~-~~~~~~a~~~~~~~g-l~~rv~~~~~d~~~~~--~~ 214 (306)
T TIGR02716 141 LLEEAKLDGVKKMIDVGGGI-GDISAAMLK-HFPELDSTILNL-PGAIDLVNENAAEKG-VADRMRGIAVDIYKES--YP 214 (306)
T ss_pred HHHHcCCCCCCEEEEeCCch-hHHHHHHHH-HCCCCEEEEEec-HHHHHHHHHHHHhCC-ccceEEEEecCccCCC--CC
Confidence 33344557789999999996 666777877 478899999998 799999999999999 7889999999986533 34
Q ss_pred CcceEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 203 EYDCIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 203 ~FDvVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
++|+|++....+. .+...++|+++++.|+|||+|++-+
T Consensus 215 ~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 215 EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 5899988765543 3445789999999999999998875
No 50
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.33 E-value=5.3e-12 Score=120.64 Aligned_cols=108 Identities=16% Similarity=0.150 Sum_probs=85.5
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccc-cccc--cCCCCcce
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDI-MEVK--EKLGEYDC 206 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA-~el~--~dL~~FDv 206 (535)
.++.+|||||||+ |..++.+|+ ..++++|+|||+++++++.|++.++..+ + .+++|+++|+ ..++ ...+.||+
T Consensus 39 ~~~~~VLDiGcGt-G~~~~~la~-~~p~~~v~gVD~s~~~i~~a~~~~~~~~-~-~~v~~~~~d~~~~l~~~~~~~~~D~ 114 (202)
T PRK00121 39 NDAPIHLEIGFGK-GEFLVEMAK-ANPDINFIGIEVHEPGVGKALKKIEEEG-L-TNLRLLCGDAVEVLLDMFPDGSLDR 114 (202)
T ss_pred CCCCeEEEEccCC-CHHHHHHHH-HCCCccEEEEEechHHHHHHHHHHHHcC-C-CCEEEEecCHHHHHHHHcCccccce
Confidence 3678999999996 566667777 3688899999999999999999998888 5 6799999999 5544 33456999
Q ss_pred EEeccccCC--------hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 207 IILAALAGN--------EEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 207 VfiaALVgm--------~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
|++.....+ ......++++++++|+|||+|++...
T Consensus 115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 997532211 01257899999999999999998653
No 51
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.32 E-value=1.1e-11 Score=126.10 Aligned_cols=128 Identities=16% Similarity=0.273 Sum_probs=103.3
Q ss_pred ccchhhH-HhHHHHH---HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC
Q 041205 107 PYYENYV-KLAKLEY---GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE 182 (535)
Q Consensus 107 pYy~NYv-~LirlE~---~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~ 182 (535)
.||+.-. .|-.-+. ..+...+.+.+|++||||||| -|.+++.+|++ + |++|+|+++|++..+.+++.+++.|
T Consensus 44 ayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCG-WG~l~~~aA~~-y-~v~V~GvTlS~~Q~~~~~~r~~~~g- 119 (283)
T COG2230 44 AYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCG-WGGLAIYAAEE-Y-GVTVVGVTLSEEQLAYAEKRIAARG- 119 (283)
T ss_pred EEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCC-hhHHHHHHHHH-c-CCEEEEeeCCHHHHHHHHHHHHHcC-
Confidence 5665544 3444443 333444578999999999999 58888999994 3 9999999999999999999999999
Q ss_pred cCCCeEEEEccccccccCCCCcceEEecccc-CC-hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 183 IEKRMKFLTCDIMEVKEKLGEYDCIILAALA-GN-EEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 183 Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALV-gm-~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
++++|+++..|-.++. +.||-|...... ++ .+.+..+|..+.+.|+|||++++.+-
T Consensus 120 l~~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I 177 (283)
T COG2230 120 LEDNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSI 177 (283)
T ss_pred CCcccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEe
Confidence 8889999999976554 349999866554 34 67899999999999999999999763
No 52
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.32 E-value=1.1e-11 Score=124.03 Aligned_cols=101 Identities=20% Similarity=0.260 Sum_probs=83.9
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
.++.+|||||||+ |..++.+|+ .|.+|+|+|+|+.+++.++++++..| + ++++..+|+.+... .+.||+|+.
T Consensus 119 ~~~~~vLDlGcG~-G~~~~~la~---~g~~V~avD~s~~ai~~~~~~~~~~~-l--~v~~~~~D~~~~~~-~~~fD~I~~ 190 (287)
T PRK12335 119 VKPGKALDLGCGQ-GRNSLYLAL---LGFDVTAVDINQQSLENLQEIAEKEN-L--NIRTGLYDINSASI-QEEYDFILS 190 (287)
T ss_pred cCCCCEEEeCCCC-CHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEechhcccc-cCCccEEEE
Confidence 4567999999995 788899988 57899999999999999999999888 5 78999999865433 356999997
Q ss_pred ccccCC--hhhHHHHHHHHHhhcccCeEEEE
Q 041205 210 AALAGN--EEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 210 aALVgm--~edK~~VL~eL~rvLKPGGvLVv 238 (535)
....+. .++...++.++.++|+|||++++
T Consensus 191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 654432 45788999999999999998655
No 53
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.31 E-value=2.6e-11 Score=115.45 Aligned_cols=108 Identities=19% Similarity=0.208 Sum_probs=84.4
Q ss_pred HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205 121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK 200 (535)
Q Consensus 121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d 200 (535)
..+...+.+.++.+|||||||+ |+.+..+++. ..+|+++|+++++++.|++.+++.| + .+++++.+|+.+....
T Consensus 68 ~~l~~~l~~~~~~~VLeiG~Gs-G~~t~~la~~---~~~v~~vd~~~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~ 141 (212)
T PRK00312 68 ARMTELLELKPGDRVLEIGTGS-GYQAAVLAHL---VRRVFSVERIKTLQWEAKRRLKQLG-L-HNVSVRHGDGWKGWPA 141 (212)
T ss_pred HHHHHhcCCCCCCEEEEECCCc-cHHHHHHHHH---hCEEEEEeCCHHHHHHHHHHHHHCC-C-CceEEEECCcccCCCc
Confidence 3334445667889999999996 6666678772 3589999999999999999999998 5 4699999998654334
Q ss_pred CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 201 LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 201 L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
.+.||+|++++.. ..+.+.+.+.|+|||++++--
T Consensus 142 ~~~fD~I~~~~~~------~~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 142 YAPFDRILVTAAA------PEIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred CCCcCEEEEccCc------hhhhHHHHHhcCCCcEEEEEE
Confidence 4679999998655 234567788999999998743
No 54
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.31 E-value=7.8e-12 Score=121.78 Aligned_cols=111 Identities=20% Similarity=0.216 Sum_probs=85.0
Q ss_pred HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205 120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE 199 (535)
Q Consensus 120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~ 199 (535)
...+...+.+.++++|||||||+ ||.+-+||.-.-+.+.|++||++++.++.|+++++.+| + .+|.+++||+..-..
T Consensus 61 ~a~~l~~L~l~pg~~VLeIGtGs-GY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~-~-~nv~~~~gdg~~g~~ 137 (209)
T PF01135_consen 61 VARMLEALDLKPGDRVLEIGTGS-GYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG-I-DNVEVVVGDGSEGWP 137 (209)
T ss_dssp HHHHHHHTTC-TT-EEEEES-TT-SHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT-T-HSEEEEES-GGGTTG
T ss_pred HHHHHHHHhcCCCCEEEEecCCC-cHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc-c-CceeEEEcchhhccc
Confidence 45555566789999999999995 99999999843456789999999999999999999999 4 599999999976555
Q ss_pred CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205 200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
+.+.||.|++.+.+. .-+ ..+.+.|++||++++=
T Consensus 138 ~~apfD~I~v~~a~~--~ip----~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 138 EEAPFDRIIVTAAVP--EIP----EALLEQLKPGGRLVAP 171 (209)
T ss_dssp GG-SEEEEEESSBBS--S------HHHHHTEEEEEEEEEE
T ss_pred cCCCcCEEEEeeccc--hHH----HHHHHhcCCCcEEEEE
Confidence 556799999987772 223 3455579999999983
No 55
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.31 E-value=2.6e-11 Score=124.40 Aligned_cols=116 Identities=13% Similarity=0.158 Sum_probs=90.4
Q ss_pred HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205 120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE 199 (535)
Q Consensus 120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~ 199 (535)
+..+..++...++++|||||||+ |+-++.|+.. ....|+|||.++.++..++...+..+ ...+|.|+.+|+.+++.
T Consensus 111 ~~~l~~~l~~l~g~~VLDIGCG~-G~~~~~la~~--g~~~V~GiD~S~~~l~q~~a~~~~~~-~~~~i~~~~~d~e~lp~ 186 (322)
T PRK15068 111 WDRVLPHLSPLKGRTVLDVGCGN-GYHMWRMLGA--GAKLVVGIDPSQLFLCQFEAVRKLLG-NDQRAHLLPLGIEQLPA 186 (322)
T ss_pred HHHHHHhhCCCCCCEEEEeccCC-cHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHhcC-CCCCeEEEeCCHHHCCC
Confidence 44444455445789999999995 7877888882 23469999999999987766555544 34689999999988776
Q ss_pred CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
.+.||+||....+++..++..+|.++++.|+|||.+++.+
T Consensus 187 -~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 187 -LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred -cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 5679999986555445788999999999999999998754
No 56
>PRK06922 hypothetical protein; Provisional
Probab=99.31 E-value=2.4e-11 Score=135.14 Aligned_cols=109 Identities=16% Similarity=0.249 Sum_probs=87.9
Q ss_pred CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc--cCCCCcc
Q 041205 128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK--EKLGEYD 205 (535)
Q Consensus 128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~--~dL~~FD 205 (535)
...++.+|||||||+ |..+..+|+ ..|+++|+|+|+++.|++.|++.....| .++.++++|+.+++ ++.+.||
T Consensus 415 d~~~g~rVLDIGCGT-G~ls~~LA~-~~P~~kVtGIDIS~~MLe~Ararl~~~g---~~ie~I~gDa~dLp~~fedeSFD 489 (677)
T PRK06922 415 DYIKGDTIVDVGAGG-GVMLDMIEE-ETEDKRIYGIDISENVIDTLKKKKQNEG---RSWNVIKGDAINLSSSFEKESVD 489 (677)
T ss_pred hhcCCCEEEEeCCCC-CHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHhhhcC---CCeEEEEcchHhCccccCCCCEE
Confidence 345689999999997 666667777 3689999999999999999998876655 47899999998766 4456799
Q ss_pred eEEeccccCC-------------hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 206 CIILAALAGN-------------EEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 206 vVfiaALVgm-------------~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
+|++....+. .++..++|++++++|||||.+++.+.
T Consensus 490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9987654431 24678999999999999999999753
No 57
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.30 E-value=1.3e-12 Score=109.30 Aligned_cols=97 Identities=19% Similarity=0.354 Sum_probs=63.7
Q ss_pred EEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC--CCcceEEecccc
Q 041205 136 AFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL--GEYDCIILAALA 213 (535)
Q Consensus 136 LeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL--~~FDvVfiaALV 213 (535)
||||||++-++..++.. .++.+++|+|+|+.+++.|++.+...+. ....+...+..+..... +.||+|++...+
T Consensus 1 LdiGcG~G~~~~~l~~~--~~~~~~~~~D~s~~~l~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEE--LPDARYTGVDISPSMLERARERLAELGN--DNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHH--C-EEEEEEEESSSSTTSTTCCCHHHCT-----EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHhhhcCC--cceeEEEeecCChhhcccccccceehhhhhH
Confidence 79999986666555544 5899999999999999999999888772 44555555554443332 379999988777
Q ss_pred CChhhHHHHHHHHHhhcccCeEE
Q 041205 214 GNEEEKAKILGHIRKYMKEGGVL 236 (535)
Q Consensus 214 gm~edK~~VL~eL~rvLKPGGvL 236 (535)
++.++...+++++++.|+|||+|
T Consensus 77 ~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S--S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhhHHHHHHHHHHHcCCCCCC
Confidence 66689999999999999999986
No 58
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.30 E-value=2e-11 Score=122.95 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=94.0
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCC------cEEEEEeCChhHHHHHHHHHhhcCCcCCC--eEEEEccccccccC
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKS------THFDNIDIDETANNLARRIVSSDDEIEKR--MKFLTCDIMEVKEK 200 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~G------a~VtGIDIDpeAIelAR~li~~lG~Ls~r--I~Fi~GDA~el~~d 200 (535)
..++++||||+||+ |-.|+.+.+ |.+. ++|+..||+|++++.|++...+.+ +.++ +.|++|||.+++++
T Consensus 98 p~~~m~~lDvaGGT-GDiaFril~-~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~-l~~~~~~~w~~~dAE~LpFd 174 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGT-GDIAFRILR-HVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRP-LKASSRVEWVEGDAEDLPFD 174 (296)
T ss_pred CCCCCeEEEecCCc-chhHHHHHH-hhccccCCCCceEEEEeCCHHHHHHHHHHHhhcC-CCcCCceEEEeCCcccCCCC
Confidence 36779999999996 888888877 5555 899999999999999999998877 5554 99999999999999
Q ss_pred CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 201 LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 201 L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
++.||...++..+---.+..+.+++.+|+|||||++.+-.
T Consensus 175 d~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred CCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999999987665334789999999999999999998654
No 59
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.28 E-value=1.9e-11 Score=115.83 Aligned_cols=108 Identities=18% Similarity=0.191 Sum_probs=86.0
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc---CCCCcce
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE---KLGEYDC 206 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~---dL~~FDv 206 (535)
....+|||||||+ |..++.+|+ ..|++.|+|||+++++++.|++.+...| + .+++|+++|+.+++. +.+.||.
T Consensus 15 ~~~~~ilDiGcG~-G~~~~~la~-~~p~~~v~gvD~~~~~l~~a~~~~~~~~-l-~ni~~i~~d~~~~~~~~~~~~~~d~ 90 (194)
T TIGR00091 15 NKAPLHLEIGCGK-GRFLIDMAK-QNPDKNFLGIEIHTPIVLAANNKANKLG-L-KNLHVLCGDANELLDKFFPDGSLSK 90 (194)
T ss_pred CCCceEEEeCCCc-cHHHHHHHH-hCCCCCEEEEEeeHHHHHHHHHHHHHhC-C-CCEEEEccCHHHHHHhhCCCCceeE
Confidence 4567999999996 666777877 3688999999999999999999999988 5 589999999987642 2346999
Q ss_pred EEeccccCChhh--------HHHHHHHHHhhcccCeEEEEEcc
Q 041205 207 IILAALAGNEEE--------KAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 207 VfiaALVgm~ed--------K~~VL~eL~rvLKPGGvLVvRsa 241 (535)
|++..-..+... ...++..++++|+|||.|.+.+.
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 998643222011 15799999999999999988764
No 60
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.3e-11 Score=119.17 Aligned_cols=108 Identities=20% Similarity=0.219 Sum_probs=87.5
Q ss_pred HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205 120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE 199 (535)
Q Consensus 120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~ 199 (535)
...+...+.+.++++||||||| .||.+-+||+ + ..+|++||++++..+.|+++++.+| + .+|.+++||+..--.
T Consensus 61 vA~m~~~L~~~~g~~VLEIGtG-sGY~aAvla~--l-~~~V~siEr~~~L~~~A~~~L~~lg-~-~nV~v~~gDG~~G~~ 134 (209)
T COG2518 61 VARMLQLLELKPGDRVLEIGTG-SGYQAAVLAR--L-VGRVVSIERIEELAEQARRNLETLG-Y-ENVTVRHGDGSKGWP 134 (209)
T ss_pred HHHHHHHhCCCCCCeEEEECCC-chHHHHHHHH--H-hCeEEEEEEcHHHHHHHHHHHHHcC-C-CceEEEECCcccCCC
Confidence 3444445667999999999999 5999999999 2 3499999999999999999999999 6 459999999976555
Q ss_pred CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205 200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
....||.|++.+.+. .-+..+ .+.|+|||++++=
T Consensus 135 ~~aPyD~I~Vtaaa~--~vP~~L----l~QL~~gGrlv~P 168 (209)
T COG2518 135 EEAPYDRIIVTAAAP--EVPEAL----LDQLKPGGRLVIP 168 (209)
T ss_pred CCCCcCEEEEeeccC--CCCHHH----HHhcccCCEEEEE
Confidence 557899999988873 223344 4579999999984
No 61
>PRK04266 fibrillarin; Provisional
Probab=99.26 E-value=8.7e-11 Score=115.44 Aligned_cols=105 Identities=12% Similarity=0.184 Sum_probs=79.2
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc--cC-CCC
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK--EK-LGE 203 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~--~d-L~~ 203 (535)
+.+.++++|||+|||+ |..++.+|+. .++++|+++|++++|++...+.++.. .+|.++.+|+.+.. .+ ...
T Consensus 68 l~i~~g~~VlD~G~G~-G~~~~~la~~-v~~g~V~avD~~~~ml~~l~~~a~~~----~nv~~i~~D~~~~~~~~~l~~~ 141 (226)
T PRK04266 68 FPIKKGSKVLYLGAAS-GTTVSHVSDI-VEEGVVYAVEFAPRPMRELLEVAEER----KNIIPILADARKPERYAHVVEK 141 (226)
T ss_pred CCCCCCCEEEEEccCC-CHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHhhhc----CCcEEEECCCCCcchhhhcccc
Confidence 5678999999999997 5566777773 44679999999999999888776653 47899999986421 11 245
Q ss_pred cceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205 204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 204 FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
||+||.+... ......+++++.++|||||.+++.
T Consensus 142 ~D~i~~d~~~--p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 142 VDVIYQDVAQ--PNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CCEEEECCCC--hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 9999975221 123355789999999999999883
No 62
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=5.3e-11 Score=119.51 Aligned_cols=152 Identities=24% Similarity=0.308 Sum_probs=115.5
Q ss_pred HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205 120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE 199 (535)
Q Consensus 120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~ 199 (535)
...+...+++.+++||+|.|+|++-+| ..||....+.++|+++|+.++.++.|+++++..| +.+++++..+|+.+...
T Consensus 83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt-~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~-l~d~v~~~~~Dv~~~~~ 160 (256)
T COG2519 83 AGYIVARLGISPGSRVLEAGTGSGALT-AYLARAVGPEGHVTTYEIREDFAKTARENLSEFG-LGDRVTLKLGDVREGID 160 (256)
T ss_pred HHHHHHHcCCCCCCEEEEcccCchHHH-HHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc-cccceEEEecccccccc
Confidence 456666778899999999999975555 5666645677999999999999999999999999 88889999999988665
Q ss_pred CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc---------cccccccCCCCcc---c--cCCcEEEE-E
Q 041205 200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA---------KGARAFLYPVVEH---E--LFDFKVLS-I 264 (535)
Q Consensus 200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa---------~GlR~fLYP~Vdp---d--l~GFeil~-v 264 (535)
.. .||+||+| + +++.++++++.+.|+|||.+++-++ ..++.. ..+++ + ...|++.. .
T Consensus 161 ~~-~vDav~LD-m----p~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~--g~~~ie~~E~l~R~~~v~~~~ 232 (256)
T COG2519 161 EE-DVDAVFLD-L----PDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRER--GFVDIEAVETLVRRWEVRKEA 232 (256)
T ss_pred cc-ccCEEEEc-C----CChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc--Cccchhhheeeeheeeecccc
Confidence 54 89999997 2 6899999999999999999999875 112221 22232 2 24566543 5
Q ss_pred EcCCCc-cee--eeEEEecC
Q 041205 265 FHPTND-VIN--SVVLLQLP 281 (535)
Q Consensus 265 ~hP~~e-VIN--SVVvARK~ 281 (535)
.+|.+. +-. -++++||.
T Consensus 233 ~RP~~~~v~HTgyivf~R~~ 252 (256)
T COG2519 233 TRPETRMVGHTGYIVFARKL 252 (256)
T ss_pred cCcccccccceeEEEEEeec
Confidence 567653 222 26777774
No 63
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.26 E-value=5.8e-11 Score=113.81 Aligned_cols=124 Identities=19% Similarity=0.274 Sum_probs=97.0
Q ss_pred hhhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEE
Q 041205 110 ENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKF 189 (535)
Q Consensus 110 ~NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~F 189 (535)
.++..+.......+.......++.+|||||||+ |..+..+++ .+++|+++|+++++++.|++.+...+ . +++|
T Consensus 27 ~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~-G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~-~--~~~~ 99 (233)
T PRK05134 27 KPLHRINPLRLNYIREHAGGLFGKRVLDVGCGG-GILSESMAR---LGADVTGIDASEENIEVARLHALESG-L--KIDY 99 (233)
T ss_pred HHHHHhhHHHHHHHHHhccCCCCCeEEEeCCCC-CHHHHHHHH---cCCeEEEEcCCHHHHHHHHHHHHHcC-C--ceEE
Confidence 444455555556655555446789999999996 666677777 46899999999999999999988877 3 6899
Q ss_pred EEcccccccc-CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 190 LTCDIMEVKE-KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 190 i~GDA~el~~-dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+.+|+.+.+. ..+.||+|++...++..++...++..+.+.|+|||.+++..
T Consensus 100 ~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 100 RQTTAEELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred EecCHHHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEe
Confidence 9999877652 23579999987665555688899999999999999998864
No 64
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.26 E-value=8.5e-11 Score=114.35 Aligned_cols=106 Identities=18% Similarity=0.171 Sum_probs=81.4
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcC------C----cCCCeEEEEcccccccc
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDD------E----IEKRMKFLTCDIMEVKE 199 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG------~----Ls~rI~Fi~GDA~el~~ 199 (535)
.++.|||++||| .|.-+++||. .|..|+|||+++.+++.+.+...... . -..+|+|+++|+.++..
T Consensus 33 ~~~~rvLd~GCG-~G~da~~LA~---~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 33 PAGARVFVPLCG-KSLDLAWLAE---QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCCeEEEeCCC-chhHHHHHHh---CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 466799999999 5899999998 68999999999999998644221100 0 02479999999988665
Q ss_pred C-CCCcceEEecc-ccCC-hhhHHHHHHHHHhhcccCeEEEEE
Q 041205 200 K-LGEYDCIILAA-LAGN-EEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 200 d-L~~FDvVfiaA-LVgm-~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
. .+.||.||-.+ ++++ .+.+.++++.+.+.|+|||++++-
T Consensus 109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 4 34599998543 3455 678899999999999999975554
No 65
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.25 E-value=6.7e-11 Score=122.05 Aligned_cols=107 Identities=18% Similarity=0.227 Sum_probs=85.1
Q ss_pred HhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCc
Q 041205 125 ENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEY 204 (535)
Q Consensus 125 ~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~F 204 (535)
..+.+.++++|||||||+ |+.++.+|+.....+.|++||+++++++.|++.++..| + +++.++++|+.+...+.+.|
T Consensus 74 ~~L~i~~g~~VLDIG~Gt-G~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g-~-~nV~~i~gD~~~~~~~~~~f 150 (322)
T PRK13943 74 EWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG-I-ENVIFVCGDGYYGVPEFAPY 150 (322)
T ss_pred HhcCCCCCCEEEEEeCCc-cHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEeCChhhcccccCCc
Confidence 334567889999999996 77778888843234689999999999999999999999 5 68999999987766656679
Q ss_pred ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
|+|+++..+ ..+...+.+.|+|||++++-.
T Consensus 151 D~Ii~~~g~------~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 151 DVIFVTVGV------DEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cEEEECCch------HHhHHHHHHhcCCCCEEEEEe
Confidence 999997555 123445678999999988854
No 66
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.25 E-value=2.9e-11 Score=125.74 Aligned_cols=104 Identities=16% Similarity=0.134 Sum_probs=85.7
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
.++.+|||||||+ |..++.+++ ..++.+|+++|+++++++.|++.... .+++|+.+|+.+++...+.||+|+.
T Consensus 112 ~~~~~VLDLGcGt-G~~~l~La~-~~~~~~VtgVD~S~~mL~~A~~k~~~-----~~i~~i~gD~e~lp~~~~sFDvVIs 184 (340)
T PLN02490 112 DRNLKVVDVGGGT-GFTTLGIVK-HVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIIEGDAEDLPFPTDYADRYVS 184 (340)
T ss_pred CCCCEEEEEecCC-cHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHhhhc-----cCCeEEeccHHhCCCCCCceeEEEE
Confidence 4678999999997 566666776 35778999999999999999987532 4689999999887766667999998
Q ss_pred ccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
...++..+++.+++++++++|+|||.+++..
T Consensus 185 ~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred cChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 7655545788899999999999999987754
No 67
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.25 E-value=4.4e-11 Score=105.86 Aligned_cols=98 Identities=19% Similarity=0.267 Sum_probs=76.8
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII 208 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf 208 (535)
..++++|||||||. |..+..|++ .|.+|+|+|+++.+++. . .+.+...+..+.....+.||+|+
T Consensus 20 ~~~~~~vLDiGcG~-G~~~~~l~~---~~~~~~g~D~~~~~~~~--------~----~~~~~~~~~~~~~~~~~~fD~i~ 83 (161)
T PF13489_consen 20 LKPGKRVLDIGCGT-GSFLRALAK---RGFEVTGVDISPQMIEK--------R----NVVFDNFDAQDPPFPDGSFDLII 83 (161)
T ss_dssp TTTTSEEEEESSTT-SHHHHHHHH---TTSEEEEEESSHHHHHH--------T----TSEEEEEECHTHHCHSSSEEEEE
T ss_pred cCCCCEEEEEcCCC-CHHHHHHHH---hCCEEEEEECCHHHHhh--------h----hhhhhhhhhhhhhccccchhhHh
Confidence 47889999999996 455566677 46799999999999988 1 23444444444445557899999
Q ss_pred eccccCChhhHHHHHHHHHhhcccCeEEEEEccc
Q 041205 209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAK 242 (535)
Q Consensus 209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~ 242 (535)
+....++.++...++.++.++|||||++++....
T Consensus 84 ~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 84 CNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp EESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred hHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 8877766679999999999999999999998753
No 68
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.23 E-value=6e-11 Score=118.44 Aligned_cols=114 Identities=20% Similarity=0.315 Sum_probs=85.4
Q ss_pred CCCCEEEEEccCCCh--hh-HHHHHhhcC----CCcEEEEEeCChhHHHHHHHHHhh------------------cC---
Q 041205 130 AQLKKVAFVGSGPMP--LT-SIILASQHM----KSTHFDNIDIDETANNLARRIVSS------------------DD--- 181 (535)
Q Consensus 130 ~~pkRVLeIGSGplP--lT-AI~LAk~~l----~Ga~VtGIDIDpeAIelAR~li~~------------------lG--- 181 (535)
.++.||+++|||++- || |+.+++... ++.+|+|+|+|++|++.|++.+-. .+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 456899999999742 22 455555222 257999999999999999986410 00
Q ss_pred ----CcCCCeEEEEccccccccCCCCcceEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205 182 ----EIEKRMKFLTCDIMEVKEKLGEYDCIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRSAKG 243 (535)
Q Consensus 182 ----~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRsa~G 243 (535)
.+.++|+|.++|+.+.+...+.||+|++....+. .+++.+++.++++.|+|||.|++-....
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~ 245 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSES 245 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECccc
Confidence 0235799999999886655678999998655443 5788899999999999999999966543
No 69
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.23 E-value=8.8e-11 Score=109.19 Aligned_cols=104 Identities=23% Similarity=0.378 Sum_probs=82.9
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
.+..+|||+|||. |.=++.+++ ..+..+|+++|+++.+++.|+++++..+ +.+ ++++.+|..+... ...||+|++
T Consensus 30 ~~~~~vLDlG~G~-G~i~~~la~-~~~~~~v~~vDi~~~a~~~a~~n~~~n~-~~~-v~~~~~d~~~~~~-~~~fD~Iv~ 104 (170)
T PF05175_consen 30 HKGGRVLDLGCGS-GVISLALAK-RGPDAKVTAVDINPDALELAKRNAERNG-LEN-VEVVQSDLFEALP-DGKFDLIVS 104 (170)
T ss_dssp HTTCEEEEETSTT-SHHHHHHHH-TSTCEEEEEEESBHHHHHHHHHHHHHTT-CTT-EEEEESSTTTTCC-TTCEEEEEE
T ss_pred ccCCeEEEecCCh-HHHHHHHHH-hCCCCEEEEEcCCHHHHHHHHHHHHhcC-ccc-ccccccccccccc-ccceeEEEE
Confidence 3688999999996 666677777 5778889999999999999999999999 655 9999999876443 467999998
Q ss_pred ccccCC-----hhhHHHHHHHHHhhcccCeEEEE
Q 041205 210 AALAGN-----EEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 210 aALVgm-----~edK~~VL~eL~rvLKPGGvLVv 238 (535)
.--.+. ..-..+++++..++|+|||.+.+
T Consensus 105 NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 105 NPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp ---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 643321 13468899999999999997743
No 70
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.23 E-value=1.3e-10 Score=111.02 Aligned_cols=103 Identities=26% Similarity=0.385 Sum_probs=83.7
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII 208 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf 208 (535)
..++++|||||||+ |..+..+++ .+.+|+|+|+|+++++.|++.+...+ ..++++|.++|+.+.+ +.||+|+
T Consensus 53 ~~~~~~vLDiGcG~-G~~~~~la~---~~~~v~gvD~s~~~i~~a~~~~~~~~-~~~~i~~~~~d~~~~~---~~fD~ii 124 (219)
T TIGR02021 53 PLKGKRVLDAGCGT-GLLSIELAK---RGAIVKAVDISEQMVQMARNRAQGRD-VAGNVEFEVNDLLSLC---GEFDIVV 124 (219)
T ss_pred CCCCCEEEEEeCCC-CHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECChhhCC---CCcCEEE
Confidence 35689999999996 666677777 46799999999999999999998877 5568999999987654 6799999
Q ss_pred ecccc-CC-hhhHHHHHHHHHhhcccCeEEEEE
Q 041205 209 LAALA-GN-EEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 209 iaALV-gm-~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
....+ ++ .++...++.++.+.+++|+++.+.
T Consensus 125 ~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 125 CMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred EhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 75554 44 456788999999999988777764
No 71
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.22 E-value=2.9e-10 Score=115.12 Aligned_cols=123 Identities=20% Similarity=0.222 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhhC-----CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEE
Q 041205 116 AKLEYGALIENTG-----VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFL 190 (535)
Q Consensus 116 irlE~~lL~~~~~-----l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi 190 (535)
++.|...+..... +.++.+|||+|||++-.|..++ ++...+.+|++||+|++|++.|++.+.... ...+|.++
T Consensus 43 tr~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll-~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-p~~~v~~i 120 (301)
T TIGR03438 43 TRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLL-DALRQPARYVPIDISADALKESAAALAADY-PQLEVHGI 120 (301)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHH-HhhccCCeEEEEECCHHHHHHHHHHHHhhC-CCceEEEE
Confidence 6777666555442 3567899999999866665555 422227899999999999999998876643 23468889
Q ss_pred EccccccccCCCC-----cceEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 191 TCDIMEVKEKLGE-----YDCIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 191 ~GDA~el~~dL~~-----FDvVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+||..+....... ..++|+.+..+. .++...+|++++++|+|||.+++..
T Consensus 121 ~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 121 CADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 9998763221222 235555556654 6677899999999999999998743
No 72
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.21 E-value=1.1e-10 Score=122.57 Aligned_cols=123 Identities=14% Similarity=0.219 Sum_probs=91.1
Q ss_pred ccchhhHHhHHHH---HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCc
Q 041205 107 PYYENYVKLAKLE---YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEI 183 (535)
Q Consensus 107 pYy~NYv~LirlE---~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~L 183 (535)
+||..-..|..-. +..+...+.+.++++|||||||. |..++.+|++ .|++|+|+|+|+++++.|++.++ | +
T Consensus 140 g~~~~~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~-G~~a~~la~~--~g~~V~giDlS~~~l~~A~~~~~--~-l 213 (383)
T PRK11705 140 GYWKDADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGW-GGLARYAAEH--YGVSVVGVTISAEQQKLAQERCA--G-L 213 (383)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCc-cHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHhc--c-C
Confidence 5775444433322 33344445668899999999996 5556777773 48899999999999999999874 4 3
Q ss_pred CCCeEEEEccccccccCCCCcceEEeccccC-C-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 184 EKRMKFLTCDIMEVKEKLGEYDCIILAALAG-N-EEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 184 s~rI~Fi~GDA~el~~dL~~FDvVfiaALVg-m-~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
.+++..+|..++ .+.||.|+...... . ..+...+++++.++|||||++++..
T Consensus 214 --~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 214 --PVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred --eEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 488999998654 25799998654332 2 3567899999999999999998854
No 73
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.21 E-value=1.5e-10 Score=113.97 Aligned_cols=110 Identities=25% Similarity=0.293 Sum_probs=83.1
Q ss_pred HHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc
Q 041205 113 VKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC 192 (535)
Q Consensus 113 v~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G 192 (535)
.+.++.-...+... ..++++|||||||+ |+.++.+++ ....+|+|+|+|+.+++.|+++++..| +.+++.+..+
T Consensus 103 h~tt~~~l~~l~~~--~~~~~~VLDiGcGs-G~l~i~~~~--~g~~~v~giDis~~~l~~A~~n~~~~~-~~~~~~~~~~ 176 (250)
T PRK00517 103 HPTTRLCLEALEKL--VLPGKTVLDVGCGS-GILAIAAAK--LGAKKVLAVDIDPQAVEAARENAELNG-VELNVYLPQG 176 (250)
T ss_pred CHHHHHHHHHHHhh--cCCCCEEEEeCCcH-HHHHHHHHH--cCCCeEEEEECCHHHHHHHHHHHHHcC-CCceEEEccC
Confidence 34444444444432 25789999999997 787787766 233469999999999999999999888 6566666554
Q ss_pred cccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205 193 DIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 193 DA~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
|. .||+|+..... .....++.++.++|+|||.+++.
T Consensus 177 ~~--------~fD~Vvani~~---~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 177 DL--------KADVIVANILA---NPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred CC--------CcCEEEEcCcH---HHHHHHHHHHHHhcCCCcEEEEE
Confidence 42 69999975433 45678899999999999999985
No 74
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.21 E-value=1.2e-10 Score=117.45 Aligned_cols=108 Identities=20% Similarity=0.285 Sum_probs=86.0
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
.++.+|||+|||+ |.-++.+|+ ..++++|+|+|+|+++++.|+++++..| +.++|+|+++|+.+.. ....||+|+.
T Consensus 120 ~~~~~vLDlG~Gs-G~i~~~la~-~~~~~~v~avDis~~al~~A~~n~~~~~-~~~~i~~~~~D~~~~~-~~~~fD~Iv~ 195 (284)
T TIGR03533 120 EPVKRILDLCTGS-GCIAIACAY-AFPEAEVDAVDISPDALAVAEINIERHG-LEDRVTLIQSDLFAAL-PGRKYDLIVS 195 (284)
T ss_pred CCCCEEEEEeCch-hHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECchhhcc-CCCCccEEEE
Confidence 4568999999996 667778877 4678999999999999999999999999 7789999999986533 2246999997
Q ss_pred cccc-------CC------------------hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 210 AALA-------GN------------------EEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 210 aALV-------gm------------------~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
.--. .+ ...+..++..+.++|+|||++++...
T Consensus 196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 4100 00 13457889999999999999998654
No 75
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.21 E-value=1.2e-10 Score=117.17 Aligned_cols=102 Identities=25% Similarity=0.319 Sum_probs=83.3
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
.++++|||||||+ |..++.+++ ....+|+|+|+|+.+++.|++++...+ +..++.+..+|... ...+.||+|+.
T Consensus 158 ~~g~~VLDvGcGs-G~lai~aa~--~g~~~V~avDid~~al~~a~~n~~~n~-~~~~~~~~~~~~~~--~~~~~fDlVva 231 (288)
T TIGR00406 158 LKDKNVIDVGCGS-GILSIAALK--LGAAKVVGIDIDPLAVESARKNAELNQ-VSDRLQVKLIYLEQ--PIEGKADVIVA 231 (288)
T ss_pred CCCCEEEEeCCCh-hHHHHHHHH--cCCCeEEEEECCHHHHHHHHHHHHHcC-CCcceEEEeccccc--ccCCCceEEEE
Confidence 4689999999997 777788777 344699999999999999999999888 77788888887432 22357999998
Q ss_pred ccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
..+. .....++.++.+.|+|||.|++-.
T Consensus 232 n~~~---~~l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 232 NILA---EVIKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred ecCH---HHHHHHHHHHHHHcCCCcEEEEEe
Confidence 6544 566789999999999999998853
No 76
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.19 E-value=1.9e-10 Score=106.85 Aligned_cols=103 Identities=19% Similarity=0.279 Sum_probs=80.2
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII 208 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf 208 (535)
..++++|||+|||+ |.-++.+++ .+.+|+++|+|+++++.|+++++..+ + +++++++|+.+.. .+.||+|+
T Consensus 17 ~~~~~~vLdlG~G~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~~~~~-~--~~~~~~~d~~~~~--~~~fD~Vi 87 (179)
T TIGR00537 17 ELKPDDVLEIGAGT-GLVAIRLKG---KGKCILTTDINPFAVKELRENAKLNN-V--GLDVVMTDLFKGV--RGKFDVIL 87 (179)
T ss_pred hcCCCeEEEeCCCh-hHHHHHHHh---cCCEEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEccccccc--CCcccEEE
Confidence 35678999999996 555667766 23499999999999999999998877 3 6899999987643 34799999
Q ss_pred eccccCC---------------------hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 209 LAALAGN---------------------EEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 209 iaALVgm---------------------~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
.....+. .....++++++.++|+|||.+++-.
T Consensus 88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 7633211 0114678999999999999988854
No 77
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.19 E-value=2.2e-10 Score=111.91 Aligned_cols=105 Identities=14% Similarity=0.122 Sum_probs=80.6
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh------cCC----cCCCeEEEEcccccccc
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSS------DDE----IEKRMKFLTCDIMEVKE 199 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~------lG~----Ls~rI~Fi~GDA~el~~ 199 (535)
.++.|||++||| .|..+++||. .|..|+|||+++.+++.+.+-... .|. .+.+|+|.++|+.++..
T Consensus 36 ~~~~rvL~~gCG-~G~da~~LA~---~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 36 PAGSRVLVPLCG-KSLDMLWLAE---QGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCeEEEeCCC-ChHhHHHHHh---CCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc
Confidence 456899999999 6999999999 699999999999999987431110 000 13689999999988754
Q ss_pred CC-CCcceEEeccc-cCC-hhhHHHHHHHHHhhcccCeEEEE
Q 041205 200 KL-GEYDCIILAAL-AGN-EEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 200 dL-~~FDvVfiaAL-Vgm-~edK~~VL~eL~rvLKPGGvLVv 238 (535)
.. +.||.||-.+. .+. .+.+.+++..+.+.|+|||++++
T Consensus 112 ~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 112 ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 33 56999995443 334 67899999999999999986443
No 78
>PRK00811 spermidine synthase; Provisional
Probab=99.19 E-value=1.3e-10 Score=117.21 Aligned_cols=110 Identities=17% Similarity=0.278 Sum_probs=85.0
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC-c--CCCeEEEEccccccccC-CCCcc
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE-I--EKRMKFLTCDIMEVKEK-LGEYD 205 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~-L--s~rI~Fi~GDA~el~~d-L~~FD 205 (535)
..+++||+||||. |.++..+++ +.+..+|++||+|+++++.|++.+...+. . +.+++++.+|+.+.... .+.||
T Consensus 75 ~~p~~VL~iG~G~-G~~~~~~l~-~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 75 PNPKRVLIIGGGD-GGTLREVLK-HPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCCEEEEEecCc-hHHHHHHHc-CCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 5789999999995 777777766 44557999999999999999999875420 1 46899999999876543 34699
Q ss_pred eEEeccccCChh----hHHHHHHHHHhhcccCeEEEEEcc
Q 041205 206 CIILAALAGNEE----EKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 206 vVfiaALVgm~e----dK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
+|++++.-+..+ -..++++.+.+.|+|||++++...
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 999986432111 137889999999999999998643
No 79
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.19 E-value=2.3e-10 Score=110.35 Aligned_cols=113 Identities=10% Similarity=0.179 Sum_probs=84.3
Q ss_pred HhHHHHHHHHHHhh-CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc
Q 041205 114 KLAKLEYGALIENT-GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC 192 (535)
Q Consensus 114 ~LirlE~~lL~~~~-~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G 192 (535)
+++..+...+.+.+ .+.++.+|||||||+ |..+..+++ ..++.+|+|||+|+++++.|++... ++.++++
T Consensus 25 ~~~~~~~~~~~~~l~~~~~~~~VLDiGCG~-G~~~~~L~~-~~~~~~v~giDiS~~~l~~A~~~~~-------~~~~~~~ 95 (204)
T TIGR03587 25 SLVAAKLAMFARALNRLPKIASILELGANI-GMNLAALKR-LLPFKHIYGVEINEYAVEKAKAYLP-------NINIIQG 95 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEecCC-CHHHHHHHH-hCCCCeEEEEECCHHHHHHHHhhCC-------CCcEEEe
Confidence 33444555555543 346788999999996 777777777 4578999999999999999987532 3678899
Q ss_pred cccccccCCCCcceEEecccc-CC-hhhHHHHHHHHHhhcccCeEEEE
Q 041205 193 DIMEVKEKLGEYDCIILAALA-GN-EEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 193 DA~el~~dL~~FDvVfiaALV-gm-~edK~~VL~eL~rvLKPGGvLVv 238 (535)
|+.+ +...+.||+|++.... ++ .++..++++++.+++ ++.+++
T Consensus 96 d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i 140 (204)
T TIGR03587 96 SLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILI 140 (204)
T ss_pred eccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEE
Confidence 9887 6666789999987655 44 456789999999987 345554
No 80
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.18 E-value=2.4e-10 Score=90.21 Aligned_cols=101 Identities=27% Similarity=0.357 Sum_probs=81.8
Q ss_pred EEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc-CCCCcceEEeccc
Q 041205 134 KVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-KLGEYDCIILAAL 212 (535)
Q Consensus 134 RVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-dL~~FDvVfiaAL 212 (535)
+|+|||||+ |..+..+++ .++.+++++|+++.+++.+++.....+ ..+++|+.+|..+... ..+.||+|++...
T Consensus 1 ~ildig~G~-G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGT-GALALALAS--GPGARVTGVDISPVALELARKAAAALL--ADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCc-cHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhccc--ccceEEEEcChhhhccccCCceEEEEEccc
Confidence 589999997 455556655 467899999999999999997544433 3689999999987654 4467999999877
Q ss_pred cCC-hhhHHHHHHHHHhhcccCeEEEEE
Q 041205 213 AGN-EEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 213 Vgm-~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
.+. ......++..+.+.++|||.+++-
T Consensus 76 ~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 655 678899999999999999999874
No 81
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.18 E-value=2.2e-10 Score=113.68 Aligned_cols=107 Identities=16% Similarity=0.211 Sum_probs=79.5
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcC--CCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHM--KSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI 207 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l--~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV 207 (535)
.++.+|||||||+ |+.+..+++.+. .++.|+|+|+|+++++.|++.. .+++|..+|+.++++..+.||+|
T Consensus 84 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-------~~~~~~~~d~~~lp~~~~sfD~I 155 (272)
T PRK11088 84 EKATALLDIGCGE-GYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-------PQVTFCVASSHRLPFADQSLDAI 155 (272)
T ss_pred CCCCeEEEECCcC-CHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-------CCCeEEEeecccCCCcCCceeEE
Confidence 4568999999996 555566666322 1358999999999999997642 35889999999888777789999
Q ss_pred EeccccCChhhHHHHHHHHHhhcccCeEEEEEccc-----ccccccCCC
Q 041205 208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAK-----GARAFLYPV 251 (535)
Q Consensus 208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~-----GlR~fLYP~ 251 (535)
+.. .. + ..+.++.|+|+|||+|++..+. .++..+|..
T Consensus 156 ~~~-~~---~---~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~~~~ 197 (272)
T PRK11088 156 IRI-YA---P---CKAEELARVVKPGGIVITVTPGPRHLFELKGLIYDE 197 (272)
T ss_pred EEe-cC---C---CCHHHHHhhccCCCEEEEEeCCCcchHHHHHHhccc
Confidence 853 22 1 2467899999999999987642 245556653
No 82
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.18 E-value=2.2e-10 Score=121.07 Aligned_cols=112 Identities=16% Similarity=0.154 Sum_probs=86.0
Q ss_pred hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc--CCCC
Q 041205 126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE--KLGE 203 (535)
Q Consensus 126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~--dL~~ 203 (535)
.+...++.+|||+||||+|.|. .+|+ ..++++|+++|+++++++.+++++++.| +..++.+..+|+..... ..+.
T Consensus 233 ~L~~~~g~~VLDlcag~G~kt~-~la~-~~~~~~v~a~D~~~~~l~~~~~n~~r~g-~~~~v~~~~~d~~~~~~~~~~~~ 309 (426)
T TIGR00563 233 WLAPQNEETILDACAAPGGKTT-HILE-LAPQAQVVALDIHEHRLKRVYENLKRLG-LTIKAETKDGDGRGPSQWAENEQ 309 (426)
T ss_pred HhCCCCCCeEEEeCCCccHHHH-HHHH-HcCCCeEEEEeCCHHHHHHHHHHHHHcC-CCeEEEEeccccccccccccccc
Confidence 3456789999999999977765 4555 3457899999999999999999999999 65445567888765433 3456
Q ss_pred cceEEeccc---cCC---hhh----------------HHHHHHHHHhhcccCeEEEEEc
Q 041205 204 YDCIILAAL---AGN---EEE----------------KAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 204 FDvVfiaAL---Vgm---~ed----------------K~~VL~eL~rvLKPGGvLVvRs 240 (535)
||.|++++. .|. .++ ..++|.++++.|||||.|++-+
T Consensus 310 fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 310 FDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred cCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 999998743 121 111 3689999999999999999865
No 83
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.17 E-value=6.1e-10 Score=114.65 Aligned_cols=115 Identities=12% Similarity=0.107 Sum_probs=86.4
Q ss_pred HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205 121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK 200 (535)
Q Consensus 121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d 200 (535)
..+..++...++++|||||||+ |+-++.++.. ....|+|||.++.++..++..-+..+ ...++.+..+++.+++..
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~-G~~~~~~~~~--g~~~v~GiDpS~~ml~q~~~~~~~~~-~~~~v~~~~~~ie~lp~~ 186 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGS-GYHMWRMLGH--GAKSLVGIDPTVLFLCQFEAVRKLLD-NDKRAILEPLGIEQLHEL 186 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCC-cHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHHhc-cCCCeEEEECCHHHCCCC
Confidence 3444444556789999999996 6766777662 22479999999999987655444333 235789999998877653
Q ss_pred CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 201 LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 201 L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
..||+||......+..+...+|.++++.|+|||.|++.+
T Consensus 187 -~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 187 -YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred -CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 479999987655445788999999999999999999754
No 84
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.17 E-value=2.4e-10 Score=114.29 Aligned_cols=117 Identities=19% Similarity=0.270 Sum_probs=92.1
Q ss_pred HHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc
Q 041205 118 LEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV 197 (535)
Q Consensus 118 lE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el 197 (535)
.....+...+.+.||++|+|.|+|.+.+| ..||+...|.++|+++|+.++.++.|+++++..| +.++|++.++|+.+.
T Consensus 27 kD~~~I~~~l~i~pG~~VlEaGtGSG~lt-~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g-l~~~v~~~~~Dv~~~ 104 (247)
T PF08704_consen 27 KDISYILMRLDIRPGSRVLEAGTGSGSLT-HALARAVGPTGHVYTYEFREDRAEKARKNFERHG-LDDNVTVHHRDVCEE 104 (247)
T ss_dssp HHHHHHHHHTT--TT-EEEEE--TTSHHH-HHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT-CCTTEEEEES-GGCG
T ss_pred chHHHHHHHcCCCCCCEEEEecCCcHHHH-HHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC-CCCCceeEecceecc
Confidence 44566666778899999999999986665 5677756789999999999999999999999999 788999999999654
Q ss_pred cc--CC-CCcceEEeccccCChhhHHHHHHHHHhhc-ccCeEEEEEcc
Q 041205 198 KE--KL-GEYDCIILAALAGNEEEKAKILGHIRKYM-KEGGVLLVRSA 241 (535)
Q Consensus 198 ~~--dL-~~FDvVfiaALVgm~edK~~VL~eL~rvL-KPGGvLVvRsa 241 (535)
.+ +. ..||.||+| + +++..++.++.+.| +|||++++-++
T Consensus 105 g~~~~~~~~~DavfLD-l----p~Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 105 GFDEELESDFDAVFLD-L----PDPWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp --STT-TTSEEEEEEE-S----SSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred cccccccCcccEEEEe-C----CCHHHHHHHHHHHHhcCCceEEEECC
Confidence 44 22 469999997 2 57899999999999 99999999775
No 85
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.17 E-value=3.1e-10 Score=107.74 Aligned_cols=101 Identities=19% Similarity=0.261 Sum_probs=79.7
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
.++.+|||||||+ |..+..+++ .+.+|+|+|+++.+++.|++.+...| +.+++.|+.+|.. ...+.||+|+.
T Consensus 62 ~~~~~vLDvGcG~-G~~~~~l~~---~~~~v~~~D~s~~~i~~a~~~~~~~~-~~~~i~~~~~d~~---~~~~~fD~v~~ 133 (230)
T PRK07580 62 LTGLRILDAGCGV-GSLSIPLAR---RGAKVVASDISPQMVEEARERAPEAG-LAGNITFEVGDLE---SLLGRFDTVVC 133 (230)
T ss_pred CCCCEEEEEeCCC-CHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHhcC-CccCcEEEEcCch---hccCCcCEEEE
Confidence 5678999999996 566677877 35789999999999999999998888 5678999999942 33467999997
Q ss_pred cccc-CC-hhhHHHHHHHHHhhcccCeEEEE
Q 041205 210 AALA-GN-EEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 210 aALV-gm-~edK~~VL~eL~rvLKPGGvLVv 238 (535)
.... ++ .++...++..+.+.+++|+++.+
T Consensus 134 ~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 134 LDVLIHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred cchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 6554 44 56677889999987765555554
No 86
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.17 E-value=1.6e-10 Score=122.52 Aligned_cols=112 Identities=19% Similarity=0.197 Sum_probs=87.6
Q ss_pred hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc----CC
Q 041205 126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE----KL 201 (535)
Q Consensus 126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~----dL 201 (535)
.+...++++|||+||||+|.|. .+|+.....++|+++|+++.+++.+++++++.| + .+|+++++|+.+++. ..
T Consensus 247 ~l~~~~g~~VLDl~ag~G~kt~-~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g-~-~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 247 LLDPQPGEVILDACAAPGGKTT-HIAELMGDQGEIWAVDRSASRLKKLQENAQRLG-L-KSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred HhCCCCcCEEEEeCCCCchhHH-HHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC-C-CeEEEEeCChhhccccccccc
Confidence 3456788999999999977764 555533445799999999999999999999999 5 469999999987652 23
Q ss_pred CCcceEEecccc---CC---hhh----------------HHHHHHHHHhhcccCeEEEEEc
Q 041205 202 GEYDCIILAALA---GN---EEE----------------KAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 202 ~~FDvVfiaALV---gm---~ed----------------K~~VL~eL~rvLKPGGvLVvRs 240 (535)
+.||.|++++-- |. .++ ..++|.++.+.|||||+|++-+
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 469999997531 21 111 3688999999999999998854
No 87
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.17 E-value=3.7e-11 Score=121.27 Aligned_cols=102 Identities=21% Similarity=0.331 Sum_probs=84.4
Q ss_pred CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCC----CeEEEEccccccccCCCCcceE
Q 041205 132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEK----RMKFLTCDIMEVKEKLGEYDCI 207 (535)
Q Consensus 132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~----rI~Fi~GDA~el~~dL~~FDvV 207 (535)
+++||||||| +|+=+.-||+ .|+.|+|||.++++++.|++....+..++. +++|.+.|+.+.. +.||.|
T Consensus 90 g~~ilDvGCG-gGLLSepLAr---lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaV 162 (282)
T KOG1270|consen 90 GMKILDVGCG-GGLLSEPLAR---LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAV 162 (282)
T ss_pred CceEEEeccC-ccccchhhHh---hCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---ccccee
Confidence 4889999999 7999999999 689999999999999999999544442333 4889999886543 349999
Q ss_pred EeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
...=.+.+..++..+++.+.++|||||.+.+-+
T Consensus 163 vcsevleHV~dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 163 VCSEVLEHVKDPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred eeHHHHHHHhCHHHHHHHHHHHhCCCCceEeee
Confidence 976454446899999999999999999998865
No 88
>PLN02366 spermidine synthase
Probab=99.16 E-value=2.5e-10 Score=117.19 Aligned_cols=110 Identities=20% Similarity=0.301 Sum_probs=86.1
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC-c-CCCeEEEEccccccccCC--CCcc
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE-I-EKRMKFLTCDIMEVKEKL--GEYD 205 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~-L-s~rI~Fi~GDA~el~~dL--~~FD 205 (535)
..+++||+||||. |.++..+++ |.+..+|+.||+|+++++.|++.+...+. + +.|++++.+|+.+..... +.||
T Consensus 90 ~~pkrVLiIGgG~-G~~~rellk-~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGD-GGVLREIAR-HSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCc-cHHHHHHHh-CCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence 6789999999995 777788887 44457899999999999999998865321 2 359999999997665433 4699
Q ss_pred eEEeccccCC-hh---hHHHHHHHHHhhcccCeEEEEEcc
Q 041205 206 CIILAALAGN-EE---EKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 206 vVfiaALVgm-~e---dK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
+|++++.-+. .. -..++++.++++|+|||++++...
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 9999865532 11 256899999999999999987543
No 89
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.15 E-value=2e-10 Score=121.84 Aligned_cols=121 Identities=21% Similarity=0.250 Sum_probs=90.3
Q ss_pred HHHHHHHHH-hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc
Q 041205 117 KLEYGALIE-NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM 195 (535)
Q Consensus 117 rlE~~lL~~-~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~ 195 (535)
+.+...+.. .+.+.++++|||+||||++.| +.+|+...++++|+++|+++++++.+++++++.| +. +|+++++|+.
T Consensus 235 qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t-~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g-~~-~v~~~~~D~~ 311 (444)
T PRK14902 235 QDESSMLVAPALDPKGGDTVLDACAAPGGKT-THIAELLKNTGKVVALDIHEHKLKLIEENAKRLG-LT-NIETKALDAR 311 (444)
T ss_pred EChHHHHHHHHhCCCCCCEEEEeCCCCCHHH-HHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-eEEEEeCCcc
Confidence 344333332 445678899999999986665 4566633367899999999999999999999999 64 5999999998
Q ss_pred ccccCC-CCcceEEecccc---CC---hh----------------hHHHHHHHHHhhcccCeEEEEEc
Q 041205 196 EVKEKL-GEYDCIILAALA---GN---EE----------------EKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 196 el~~dL-~~FDvVfiaALV---gm---~e----------------dK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+....+ +.||+|++++-- |. .+ -...+|.++.+.|||||.|++-+
T Consensus 312 ~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 312 KVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred cccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 754333 569999998531 11 00 12468999999999999999754
No 90
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.15 E-value=2.3e-10 Score=113.95 Aligned_cols=111 Identities=13% Similarity=0.160 Sum_probs=87.0
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC 206 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv 206 (535)
+...++.+|||+||||++.|.. +|......+.|+++|+++.+++.+++++++.| + .+|.++++|+.++....+.||+
T Consensus 67 l~~~~g~~VLDl~ag~G~kt~~-la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g-~-~~v~~~~~D~~~~~~~~~~fD~ 143 (264)
T TIGR00446 67 LEPDPPERVLDMAAAPGGKTTQ-ISALMKNEGAIVANEFSKSRTKVLIANINRCG-V-LNVAVTNFDGRVFGAAVPKFDA 143 (264)
T ss_pred hCCCCcCEEEEECCCchHHHHH-HHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-C-CcEEEecCCHHHhhhhccCCCE
Confidence 3557889999999999777755 45533345799999999999999999999999 5 5799999999776554556999
Q ss_pred EEecccc---CC---h----------------hhHHHHHHHHHhhcccCeEEEEEc
Q 041205 207 IILAALA---GN---E----------------EEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 207 VfiaALV---gm---~----------------edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
|++++-- |. . ..-.++|.++.+.|||||+|++-+
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 9987431 21 0 122469999999999999998764
No 91
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.15 E-value=3.7e-10 Score=120.19 Aligned_cols=112 Identities=17% Similarity=0.226 Sum_probs=88.2
Q ss_pred hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc-CCCCc
Q 041205 126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-KLGEY 204 (535)
Q Consensus 126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-dL~~F 204 (535)
.+.+.++.+|||+||||+|.|.. +|....++++|+++|+++.+++.+++++++.| + .+++++++|+.+++. ..+.|
T Consensus 232 ~l~~~~g~~VLD~cagpGgkt~~-la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g-~-~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 232 LMELEPGLRVLDTCAAPGGKTTA-IAELMKDQGKILAVDISREKIQLVEKHAKRLK-L-SSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred HhCCCCCCEEEEeCCCccHHHHH-HHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CeEEEEECchhhhhhhhhccC
Confidence 34567899999999999777754 45533457899999999999999999999999 5 469999999987652 23469
Q ss_pred ceEEecccc---CC-h--h----------------hHHHHHHHHHhhcccCeEEEEEc
Q 041205 205 DCIILAALA---GN-E--E----------------EKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 205 DvVfiaALV---gm-~--e----------------dK~~VL~eL~rvLKPGGvLVvRs 240 (535)
|.|++++-- |+ . + ...++|.++.+.|+|||++++-+
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999997433 32 1 1 23677999999999999998865
No 92
>PRK05785 hypothetical protein; Provisional
Probab=99.15 E-value=1.9e-10 Score=112.15 Aligned_cols=91 Identities=12% Similarity=0.085 Sum_probs=75.5
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA 210 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia 210 (535)
++.+|||||||++ ..+..+++. . +.+|+|+|+|++|++.|++. + .++++|+.++++..+.||+|++.
T Consensus 51 ~~~~VLDlGcGtG-~~~~~l~~~-~-~~~v~gvD~S~~Ml~~a~~~----~------~~~~~d~~~lp~~d~sfD~v~~~ 117 (226)
T PRK05785 51 RPKKVLDVAAGKG-ELSYHFKKV-F-KYYVVALDYAENMLKMNLVA----D------DKVVGSFEALPFRDKSFDVVMSS 117 (226)
T ss_pred CCCeEEEEcCCCC-HHHHHHHHh-c-CCEEEEECCCHHHHHHHHhc----c------ceEEechhhCCCCCCCEEEEEec
Confidence 4789999999974 556677773 3 68999999999999999853 2 35789999888888889999987
Q ss_pred cccCChhhHHHHHHHHHhhcccCe
Q 041205 211 ALAGNEEEKAKILGHIRKYMKEGG 234 (535)
Q Consensus 211 ALVgm~edK~~VL~eL~rvLKPGG 234 (535)
..++..+++.+++.+++|+|||++
T Consensus 118 ~~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 118 FALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred ChhhccCCHHHHHHHHHHHhcCce
Confidence 666556899999999999999964
No 93
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.14 E-value=3.3e-10 Score=120.53 Aligned_cols=110 Identities=19% Similarity=0.175 Sum_probs=86.2
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC 206 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv 206 (535)
+...++++|||+||||++.| +.+|+....+++|+++|+++++++.+++++++.| + .+|+++++|+.+++ ....||+
T Consensus 246 l~~~~g~~VLDlgaG~G~kt-~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-~-~~v~~~~~Da~~~~-~~~~fD~ 321 (445)
T PRK14904 246 LNPQPGSTVLDLCAAPGGKS-TFMAELMQNRGQITAVDRYPQKLEKIRSHASALG-I-TIIETIEGDARSFS-PEEQPDA 321 (445)
T ss_pred cCCCCCCEEEEECCCCCHHH-HHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC-C-CeEEEEeCcccccc-cCCCCCE
Confidence 35567899999999986655 4566633346799999999999999999999999 5 57999999998765 3356999
Q ss_pred EEecccc---CC-h------------------hhHHHHHHHHHhhcccCeEEEEEc
Q 041205 207 IILAALA---GN-E------------------EEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 207 VfiaALV---gm-~------------------edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
|++++-- |+ . ....++|.++.+.|+|||+|++-+
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9987421 21 0 123468999999999999999965
No 94
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.14 E-value=3.4e-10 Score=115.66 Aligned_cols=106 Identities=23% Similarity=0.358 Sum_probs=84.8
Q ss_pred CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205 132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA 211 (535)
Q Consensus 132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA 211 (535)
+.+|||+|||+ |.-++.+|. ..++++|+++|+|+++++.|+++++..| +.++|+|+++|+.+... .+.||+|+..-
T Consensus 134 ~~~VLDlG~Gs-G~iai~la~-~~p~~~V~avDis~~al~~A~~n~~~~~-l~~~i~~~~~D~~~~l~-~~~fDlIvsNP 209 (307)
T PRK11805 134 VTRILDLCTGS-GCIAIACAY-AFPDAEVDAVDISPDALAVAEINIERHG-LEDRVTLIESDLFAALP-GRRYDLIVSNP 209 (307)
T ss_pred CCEEEEEechh-hHHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHhC-CCCcEEEEECchhhhCC-CCCccEEEECC
Confidence 37999999996 667777877 4688999999999999999999999998 77789999999865332 24699999741
Q ss_pred ----------------------ccC--C-hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 212 ----------------------LAG--N-EEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 212 ----------------------LVg--m-~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
+.| . ...+..++..+.++|+|||.+++...
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 000 0 13457899999999999999998654
No 95
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.14 E-value=3.1e-10 Score=120.40 Aligned_cols=112 Identities=21% Similarity=0.221 Sum_probs=85.0
Q ss_pred HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc--cc
Q 041205 121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME--VK 198 (535)
Q Consensus 121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e--l~ 198 (535)
..+...+...++++|||||||+ |..+..+++ .+.+|+|||+++++++.+++.. + ...+++|+++|+.+ ++
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~-G~~~~~la~---~~~~v~giD~s~~~l~~a~~~~---~-~~~~i~~~~~d~~~~~~~ 98 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGI-GRFTGELAK---KAGQVIALDFIESVIKKNESIN---G-HYKNVKFMCADVTSPDLN 98 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCc-CHHHHHHHh---hCCEEEEEeCCHHHHHHHHHHh---c-cCCceEEEEecccccccC
Confidence 3444444445678999999995 666677888 2579999999999999887643 2 23589999999863 33
Q ss_pred cCCCCcceEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 199 EKLGEYDCIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 199 ~dL~~FDvVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
.+.+.||+|++....++ .++...++.++.+.|+|||++++++
T Consensus 99 ~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 99 ISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred CCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 44467999998755543 3446899999999999999999976
No 96
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.13 E-value=1.6e-10 Score=114.36 Aligned_cols=107 Identities=20% Similarity=0.229 Sum_probs=89.1
Q ss_pred HhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCc
Q 041205 125 ENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEY 204 (535)
Q Consensus 125 ~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~F 204 (535)
...++..+.+|.|+||||+-.|. +|+++ .|++.|+|||-|++|++.|++. +. +.+|..||+.++..+ .++
T Consensus 24 a~Vp~~~~~~v~DLGCGpGnsTe-lL~~R-wP~A~i~GiDsS~~Mla~Aa~r---lp----~~~f~~aDl~~w~p~-~~~ 93 (257)
T COG4106 24 ARVPLERPRRVVDLGCGPGNSTE-LLARR-WPDAVITGIDSSPAMLAKAAQR---LP----DATFEEADLRTWKPE-QPT 93 (257)
T ss_pred hhCCccccceeeecCCCCCHHHH-HHHHh-CCCCeEeeccCCHHHHHHHHHh---CC----CCceecccHhhcCCC-Ccc
Confidence 34567899999999999955555 55553 8999999999999999999654 32 578999999876543 579
Q ss_pred ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
|++|..+..++.++-.++|.++...|.|||+|.+--+
T Consensus 94 dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 94 DLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred chhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECC
Confidence 9999988888889999999999999999999999654
No 97
>PRK14968 putative methyltransferase; Provisional
Probab=99.13 E-value=1e-09 Score=100.46 Aligned_cols=104 Identities=21% Similarity=0.361 Sum_probs=81.2
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCC-eEEEEccccccccCCCCcceEE
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKR-MKFLTCDIMEVKEKLGEYDCII 208 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~r-I~Fi~GDA~el~~dL~~FDvVf 208 (535)
.++++|||+|||. |++++.++.+ +++|+++|+|+++++.+++.+...+ +.++ +.++++|..+...+ ..||+|+
T Consensus 22 ~~~~~vLd~G~G~-G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~~d~~~~~~~-~~~d~vi 95 (188)
T PRK14968 22 KKGDRVLEVGTGS-GIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNN-IRNNGVEVIRSDLFEPFRG-DKFDVIL 95 (188)
T ss_pred cCCCEEEEEcccc-CHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcC-CCCcceEEEeccccccccc-cCceEEE
Confidence 6788999999995 7788888882 7999999999999999999998888 5444 99999998763322 3699998
Q ss_pred eccccCC---------------------hhhHHHHHHHHHhhcccCeEEEEE
Q 041205 209 LAALAGN---------------------EEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 209 iaALVgm---------------------~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
....... ......+++++.++|+|||.+++-
T Consensus 96 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~ 147 (188)
T PRK14968 96 FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL 147 (188)
T ss_pred ECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 6532210 122466899999999999987764
No 98
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.12 E-value=4.4e-10 Score=106.54 Aligned_cols=104 Identities=19% Similarity=0.274 Sum_probs=85.9
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-CCcceEEe
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-GEYDCIIL 209 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-~~FDvVfi 209 (535)
.+.+|||||||+ |..+..+++ .+.+|+++|+++.+++.+++.+...+ . .+++|.++|+.+.+... +.||+|++
T Consensus 45 ~~~~vLdlG~G~-G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~D~i~~ 118 (224)
T TIGR01983 45 FGLRVLDVGCGG-GLLSEPLAR---LGANVTGIDASEENIEVAKLHAKKDP-L-LKIEYRCTSVEDLAEKGAKSFDVVTC 118 (224)
T ss_pred CCCeEEEECCCC-CHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcC-C-CceEEEeCCHHHhhcCCCCCccEEEe
Confidence 478999999997 566667777 35789999999999999999988877 3 36899999998766543 57999998
Q ss_pred ccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
....+...+...++..+.+.|+|||.+++..
T Consensus 119 ~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 119 MEVLEHVPDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred hhHHHhCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 7655545678899999999999999988764
No 99
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.11 E-value=6e-10 Score=113.87 Aligned_cols=109 Identities=17% Similarity=0.066 Sum_probs=87.6
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC 206 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv 206 (535)
....++++|||+|||++++ ++-.+. .|+.|+|+|+|++++..|+++++..| +.+ +.++++|+.+++...+.||+
T Consensus 178 ~~~~~g~~vLDp~cGtG~~-lieaa~---~~~~v~g~Di~~~~~~~a~~nl~~~g-~~~-i~~~~~D~~~l~~~~~~~D~ 251 (329)
T TIGR01177 178 ARVTEGDRVLDPFCGTGGF-LIEAGL---MGAKVIGCDIDWKMVAGARINLEHYG-IED-FFVKRGDATKLPLSSESVDA 251 (329)
T ss_pred hCCCCcCEEEECCCCCCHH-HHHHHH---hCCeEEEEcCCHHHHHHHHHHHHHhC-CCC-CeEEecchhcCCcccCCCCE
Confidence 3557889999999997544 444444 58999999999999999999999999 554 99999999987765567999
Q ss_pred EEeccccCC---------hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 207 IILAALAGN---------EEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 207 VfiaALVgm---------~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
|+++.-.|. ..-+.++++++.++|+|||.+++-.+
T Consensus 252 Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 252 IATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred EEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 999743221 12368999999999999999888654
No 100
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.11 E-value=9.3e-10 Score=116.55 Aligned_cols=110 Identities=18% Similarity=0.203 Sum_probs=85.3
Q ss_pred hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc--CCCC
Q 041205 126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE--KLGE 203 (535)
Q Consensus 126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~--dL~~ 203 (535)
.+...++++|||+||||++.|. .+++ ..++++|+++|+++++++.+++++++.| + +++++++|+.+... ..+.
T Consensus 239 ~l~~~~g~~VLDlgaG~G~~t~-~la~-~~~~~~v~a~D~s~~~l~~~~~n~~~~g-~--~~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 239 LLAPQNGERVLDACAAPGGKTA-HILE-LAPQAQVVALDIDAQRLERVRENLQRLG-L--KATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred HcCCCCCCEEEEeCCCCChHHH-HHHH-HcCCCEEEEEeCCHHHHHHHHHHHHHcC-C--CeEEEEcCcccchhhcccCC
Confidence 4456789999999999977665 4555 2456899999999999999999999999 5 47899999976532 2346
Q ss_pred cceEEecccc---CC-----------h--------hhHHHHHHHHHhhcccCeEEEEEc
Q 041205 204 YDCIILAALA---GN-----------E--------EEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 204 FDvVfiaALV---gm-----------~--------edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
||.|++++-- |. . ....+++..+.+.|+|||+|++-+
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 9999977532 10 0 123579999999999999999765
No 101
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.11 E-value=7.5e-10 Score=107.23 Aligned_cols=107 Identities=20% Similarity=0.275 Sum_probs=83.9
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC 206 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv 206 (535)
....++.++||+||| -|-=|++||+ .|..|+++|+|+.+++..++++++-+ + .|+..+.|..+...+ ..||+
T Consensus 26 ~~~~~~g~~LDlgcG-~GRNalyLA~---~G~~VtAvD~s~~al~~l~~~a~~~~-l--~i~~~~~Dl~~~~~~-~~yD~ 97 (192)
T PF03848_consen 26 VPLLKPGKALDLGCG-EGRNALYLAS---QGFDVTAVDISPVALEKLQRLAEEEG-L--DIRTRVADLNDFDFP-EEYDF 97 (192)
T ss_dssp CTTS-SSEEEEES-T-TSHHHHHHHH---TT-EEEEEESSHHHHHHHHHHHHHTT----TEEEEE-BGCCBS-T-TTEEE
T ss_pred HhhcCCCcEEEcCCC-CcHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHhhcC-c--eeEEEEecchhcccc-CCcCE
Confidence 344578899999999 5899999999 79999999999999999999999988 4 499999998765543 57999
Q ss_pred EEecccc-CC-hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 207 IILAALA-GN-EEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 207 VfiaALV-gm-~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
|+..... .+ .+....+++.+...++|||++++...
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 9853222 23 67778899999999999999888553
No 102
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.11 E-value=1.1e-09 Score=109.85 Aligned_cols=106 Identities=20% Similarity=0.331 Sum_probs=84.8
Q ss_pred CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205 132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA 211 (535)
Q Consensus 132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA 211 (535)
+.+|||+|||+ |.-++.+|. ..++++|+++|+|+++++.|+++++..| +.++++|+++|..+.. ....||+|+..-
T Consensus 115 ~~~vLDlG~Gs-G~i~l~la~-~~~~~~v~avDis~~al~~a~~n~~~~~-~~~~v~~~~~d~~~~~-~~~~fDlIvsNP 190 (284)
T TIGR00536 115 ILHILDLGTGS-GCIALALAY-EFPNAEVIAVDISPDALAVAEENAEKNQ-LEHRVEFIQSNLFEPL-AGQKIDIIVSNP 190 (284)
T ss_pred CCEEEEEeccH-hHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECchhccC-cCCCccEEEECC
Confidence 37999999996 677788887 4678999999999999999999999999 6678999999987532 223699998741
Q ss_pred ----------------------ccC-C--hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 212 ----------------------LAG-N--EEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 212 ----------------------LVg-m--~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
+.| - ...+..++.++.++|+|||.+++-.+
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 010 0 13578899999999999999998654
No 103
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.10 E-value=8e-10 Score=106.04 Aligned_cols=106 Identities=22% Similarity=0.278 Sum_probs=83.3
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
..+.+|||+|||+ |..++.+++ ..++.+|+|+|+++.+++.|++++...| + .+++|+++|+.+. ...+.||+|+.
T Consensus 86 ~~~~~ilDig~G~-G~~~~~l~~-~~~~~~v~~iD~~~~~~~~a~~~~~~~~-~-~~~~~~~~d~~~~-~~~~~fD~Vi~ 160 (251)
T TIGR03534 86 KGPLRVLDLGTGS-GAIALALAK-ERPDARVTAVDISPEALAVARKNAARLG-L-DNVTFLQSDWFEP-LPGGKFDLIVS 160 (251)
T ss_pred cCCCeEEEEeCcH-hHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CeEEEEECchhcc-CcCCceeEEEE
Confidence 3467999999996 677777877 4678899999999999999999999988 5 4799999999763 33467999987
Q ss_pred ccccC-------C-------------------hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 210 AALAG-------N-------------------EEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 210 aALVg-------m-------------------~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
.--.. + ......++.++.++|+|||.+++..
T Consensus 161 npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 161 NPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred CCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 32110 1 1123578999999999999999864
No 104
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.09 E-value=9.9e-10 Score=115.81 Aligned_cols=114 Identities=13% Similarity=0.169 Sum_probs=86.5
Q ss_pred HHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcC--CCeEEEEcccccccc
Q 041205 122 ALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIE--KRMKFLTCDIMEVKE 199 (535)
Q Consensus 122 lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls--~rI~Fi~GDA~el~~ 199 (535)
.|..+++...+.+|||+|||+ |.-++.+++ ..|+++|+++|+|+.|++.|+++++..+ .+ .+++|+.+|+.+..
T Consensus 219 llL~~lp~~~~~~VLDLGCGt-Gvi~i~la~-~~P~~~V~~vD~S~~Av~~A~~N~~~n~-~~~~~~v~~~~~D~l~~~- 294 (378)
T PRK15001 219 FFMQHLPENLEGEIVDLGCGN-GVIGLTLLD-KNPQAKVVFVDESPMAVASSRLNVETNM-PEALDRCEFMINNALSGV- 294 (378)
T ss_pred HHHHhCCcccCCeEEEEeccc-cHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-cccCceEEEEEccccccC-
Confidence 344445434457999999996 666778877 4789999999999999999999998776 33 47999999986432
Q ss_pred CCCCcceEEeccccC--C---hhhHHHHHHHHHhhcccCeEEEEE
Q 041205 200 KLGEYDCIILAALAG--N---EEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 200 dL~~FDvVfiaALVg--m---~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
....||+|++.--.+ . .....+++.++.++|+|||.|.+-
T Consensus 295 ~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 295 EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 224699999863322 1 134568999999999999988775
No 105
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.09 E-value=1.2e-09 Score=118.66 Aligned_cols=106 Identities=15% Similarity=0.265 Sum_probs=84.4
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA 210 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia 210 (535)
++.+|||||||+ |.-++.+|. ..++++|+++|+|+++++.|++++...| +.++++|+++|+.+.. ..+.||+|+..
T Consensus 138 ~~~~VLDlG~Gs-G~iai~la~-~~p~~~v~avDis~~al~~A~~N~~~~~-l~~~v~~~~~D~~~~~-~~~~fDlIvsN 213 (506)
T PRK01544 138 KFLNILELGTGS-GCIAISLLC-ELPNANVIATDISLDAIEVAKSNAIKYE-VTDRIQIIHSNWFENI-EKQKFDFIVSN 213 (506)
T ss_pred CCCEEEEccCch-hHHHHHHHH-HCCCCeEEEEECCHHHHHHHHHHHHHcC-CccceeeeecchhhhC-cCCCccEEEEC
Confidence 457999999996 677777777 3688999999999999999999999988 7789999999986532 22469999972
Q ss_pred c-----------------------ccC-C--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 211 A-----------------------LAG-N--EEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 211 A-----------------------LVg-m--~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
- +.| - ...+.+++.++.++|+|||.+++-.
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 111 0 2456778899999999999998854
No 106
>PRK01581 speE spermidine synthase; Validated
Probab=99.08 E-value=7.1e-10 Score=116.73 Aligned_cols=111 Identities=23% Similarity=0.346 Sum_probs=84.5
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHH-----hhcCCcCCCeEEEEccccccccCC-C
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIV-----SSDDEIEKRMKFLTCDIMEVKEKL-G 202 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li-----~~lG~Ls~rI~Fi~GDA~el~~dL-~ 202 (535)
...+++||+|||| .|+++..+.+ +.+..+|++||+|+++++.|++.. .+.+.-+.|++++.+|+.+..... +
T Consensus 148 h~~PkrVLIIGgG-dG~tlrelLk-~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~ 225 (374)
T PRK01581 148 VIDPKRVLILGGG-DGLALREVLK-YETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSS 225 (374)
T ss_pred CCCCCEEEEECCC-HHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCC
Confidence 3678999999999 5777777776 455689999999999999999731 122211479999999998865443 4
Q ss_pred CcceEEeccccCC-----hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 203 EYDCIILAALAGN-----EEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 203 ~FDvVfiaALVgm-----~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
.||+||++..-.. ..-..++++.+++.|+|||++++...
T Consensus 226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 6999999954321 12236799999999999999988753
No 107
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.07 E-value=9.1e-10 Score=103.30 Aligned_cols=102 Identities=14% Similarity=0.167 Sum_probs=74.2
Q ss_pred HHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc-----
Q 041205 124 IENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK----- 198 (535)
Q Consensus 124 ~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~----- 198 (535)
.++..+.++++|||||||++++|..+... ..++++|+++|+++.+ + . .+++++++|+.+..
T Consensus 25 ~~~~~i~~g~~VLDiG~GtG~~~~~l~~~-~~~~~~v~~vDis~~~-----------~-~-~~i~~~~~d~~~~~~~~~l 90 (188)
T TIGR00438 25 QKFKLIKPGDTVLDLGAAPGGWSQVAVEQ-VGGKGRVIAVDLQPMK-----------P-I-ENVDFIRGDFTDEEVLNKI 90 (188)
T ss_pred HHhcccCCCCEEEEecCCCCHHHHHHHHH-hCCCceEEEEeccccc-----------c-C-CCceEEEeeCCChhHHHHH
Confidence 33445688999999999998887665544 4466799999999965 2 1 35789999986532
Q ss_pred ---cCCCCcceEEeccc---cCC--------hhhHHHHHHHHHhhcccCeEEEEE
Q 041205 199 ---EKLGEYDCIILAAL---AGN--------EEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 199 ---~dL~~FDvVfiaAL---Vgm--------~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
.+.+.||+|+.++. .|. .+....++..+.+.|+|||++++-
T Consensus 91 ~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 91 RERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred HHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 23346999998532 111 123478999999999999999984
No 108
>PRK06202 hypothetical protein; Provisional
Probab=99.06 E-value=2.1e-09 Score=103.72 Aligned_cols=102 Identities=18% Similarity=0.098 Sum_probs=74.1
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhc---CCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQH---MKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC 206 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~---l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv 206 (535)
.++.+|||||||++ ..+..|++.. .++.+|+|+|+++++++.|++..... +++++++++.+++...+.||+
T Consensus 59 ~~~~~iLDlGcG~G-~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-----~~~~~~~~~~~l~~~~~~fD~ 132 (232)
T PRK06202 59 DRPLTLLDIGCGGG-DLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP-----GVTFRQAVSDELVAEGERFDV 132 (232)
T ss_pred CCCcEEEEeccCCC-HHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC-----CCeEEEEecccccccCCCccE
Confidence 56789999999975 4555666521 34679999999999999999875443 357777776655555567999
Q ss_pred EEeccccCC--hhhHHHHHHHHHhhcccCeEEEE
Q 041205 207 IILAALAGN--EEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 207 VfiaALVgm--~edK~~VL~eL~rvLKPGGvLVv 238 (535)
|++....+. .++...++.++.++++ |++++.
T Consensus 133 V~~~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i~ 165 (232)
T PRK06202 133 VTSNHFLHHLDDAEVVRLLADSAALAR-RLVLHN 165 (232)
T ss_pred EEECCeeecCChHHHHHHHHHHHHhcC-eeEEEe
Confidence 998755543 3345789999999988 444433
No 109
>PRK14967 putative methyltransferase; Provisional
Probab=99.05 E-value=2.3e-09 Score=103.49 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=80.7
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII 208 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf 208 (535)
+.++.+|||+|||+ |.-++.+++. ...+|+++|+|+.+++.|+++++..| + +++++++|+.+.. ..+.||+|+
T Consensus 34 ~~~~~~vLDlGcG~-G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~-~--~~~~~~~d~~~~~-~~~~fD~Vi 106 (223)
T PRK14967 34 LGPGRRVLDLCTGS-GALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAG-V--DVDVRRGDWARAV-EFRPFDVVV 106 (223)
T ss_pred cCCCCeEEEecCCH-HHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhC-C--eeEEEECchhhhc-cCCCeeEEE
Confidence 46789999999997 6677788772 33499999999999999999999888 4 6899999987643 335799999
Q ss_pred eccccCC---------------------hhhHHHHHHHHHhhcccCeEEEEE
Q 041205 209 LAALAGN---------------------EEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 209 iaALVgm---------------------~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
.+.-... ......+++++.++|+|||++++-
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 8632110 112456888999999999999873
No 110
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.05 E-value=1.8e-09 Score=114.34 Aligned_cols=108 Identities=16% Similarity=0.155 Sum_probs=87.4
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc--cCCCCcceE
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK--EKLGEYDCI 207 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~--~dL~~FDvV 207 (535)
..+..|||||||. |.-++.+|++ .|+..|+|||+++.+++.|.+.+...| + .++.++++|+..+. .+.+.||.|
T Consensus 121 ~~~p~vLEIGcGs-G~~ll~lA~~-~P~~~~iGIEI~~~~i~~a~~ka~~~g-L-~NV~~i~~DA~~ll~~~~~~s~D~I 196 (390)
T PRK14121 121 NQEKILIEIGFGS-GRHLLYQAKN-NPNKLFIGIEIHTPSIEQVLKQIELLN-L-KNLLIINYDARLLLELLPSNSVEKI 196 (390)
T ss_pred CCCCeEEEEcCcc-cHHHHHHHHh-CCCCCEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEECCHHHhhhhCCCCceeEE
Confidence 4567999999996 6666788884 689999999999999999999999988 5 57999999997653 234579999
Q ss_pred EeccccCC-h-hh----HHHHHHHHHhhcccCeEEEEEcc
Q 041205 208 ILAALAGN-E-EE----KAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 208 fiaALVgm-~-ed----K~~VL~eL~rvLKPGGvLVvRsa 241 (535)
|+..-..+ . .. ...+++.++++|+|||.+.+++-
T Consensus 197 ~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 197 FVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred EEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 98644433 1 11 15799999999999999999875
No 111
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.04 E-value=1.4e-09 Score=109.17 Aligned_cols=116 Identities=22% Similarity=0.347 Sum_probs=92.5
Q ss_pred HHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC
Q 041205 122 ALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL 201 (535)
Q Consensus 122 lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL 201 (535)
+|..+.......+|||+|||. |.-++++|++ .+.++|++||+++++++.|++.++-.+ ++++|+++++|+.++....
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~-G~l~L~la~r-~~~a~I~~VEiq~~~a~~A~~nv~ln~-l~~ri~v~~~Di~~~~~~~ 111 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGN-GALGLLLAQR-TEKAKIVGVEIQEEAAEMAQRNVALNP-LEERIQVIEADIKEFLKAL 111 (248)
T ss_pred HHHhhcccccCCeEEEecCCc-CHHHHHHhcc-CCCCcEEEEEeCHHHHHHHHHHHHhCc-chhceeEehhhHHHhhhcc
Confidence 444455556689999999995 8888999985 455999999999999999999999988 8999999999998876544
Q ss_pred --CCcceEEecccc-----------------CC-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 202 --GEYDCIILAALA-----------------GN-EEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 202 --~~FDvVfiaALV-----------------gm-~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
..||+|++.--. ++ .-+-+.+++-..+.|||||.+.+-.
T Consensus 112 ~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 112 VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 359999864211 11 1235678888999999999988754
No 112
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.04 E-value=2.5e-09 Score=109.50 Aligned_cols=137 Identities=23% Similarity=0.267 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc
Q 041205 116 AKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM 195 (535)
Q Consensus 116 irlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~ 195 (535)
+++=...+..+. .++++|||||||+ |.-+|..++ +...+|+++|+||.+++.|+++++.-| +++++.+. ...
T Consensus 148 T~lcl~~l~~~~--~~g~~vLDvG~GS-GILaiaA~k--lGA~~v~a~DiDp~Av~~a~~N~~~N~-~~~~~~v~--~~~ 219 (295)
T PF06325_consen 148 TRLCLELLEKYV--KPGKRVLDVGCGS-GILAIAAAK--LGAKKVVAIDIDPLAVEAARENAELNG-VEDRIEVS--LSE 219 (295)
T ss_dssp HHHHHHHHHHHS--STTSEEEEES-TT-SHHHHHHHH--TTBSEEEEEESSCHHHHHHHHHHHHTT--TTCEEES--CTS
T ss_pred HHHHHHHHHHhc--cCCCEEEEeCCcH-HHHHHHHHH--cCCCeEEEecCCHHHHHHHHHHHHHcC-CCeeEEEE--Eec
Confidence 334445555543 5789999999996 888888877 333479999999999999999999999 78888663 222
Q ss_pred ccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcccccccccCCCCcccc-CCcEEEEEEcCC
Q 041205 196 EVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEHEL-FDFKVLSIFHPT 268 (535)
Q Consensus 196 el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdpdl-~GFeil~v~hP~ 268 (535)
+... ..||+|+..-+. ..-..++..+.++|+|||.+++. |+-.--.+.+...+ .||++.....-.
T Consensus 220 ~~~~--~~~dlvvANI~~---~vL~~l~~~~~~~l~~~G~lIlS---GIl~~~~~~v~~a~~~g~~~~~~~~~~ 285 (295)
T PF06325_consen 220 DLVE--GKFDLVVANILA---DVLLELAPDIASLLKPGGYLILS---GILEEQEDEVIEAYKQGFELVEEREEG 285 (295)
T ss_dssp CTCC--S-EEEEEEES-H---HHHHHHHHHCHHHEEEEEEEEEE---EEEGGGHHHHHHHHHTTEEEEEEEEET
T ss_pred cccc--ccCCEEEECCCH---HHHHHHHHHHHHhhCCCCEEEEc---cccHHHHHHHHHHHHCCCEEEEEEEEC
Confidence 2222 679999975444 45677888899999999999983 32111111111111 399987665533
No 113
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.03 E-value=2.5e-09 Score=103.44 Aligned_cols=124 Identities=16% Similarity=0.166 Sum_probs=82.8
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc--------cC
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK--------EK 200 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~--------~d 200 (535)
+.++.+||||||||+.+|. .++++..++++|++||+++ + .+ . .+++|+++|+.+.. ..
T Consensus 49 ~~~~~~VLDlG~GtG~~t~-~l~~~~~~~~~V~aVDi~~-~----------~~-~-~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQ-YAVTQIGDKGRVIACDILP-M----------DP-I-VGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCCEEEEEcccCCHHHH-HHHHHcCCCceEEEEeccc-c----------cC-C-CCcEEEecCCCChHHHHHHHHHhC
Confidence 4678999999999966654 4555344568999999998 1 12 2 35899999998742 23
Q ss_pred CCCcceEEeccccCC--hh--h-------HHHHHHHHHhhcccCeEEEEEcccccccccCCCCcccc-CCcEEEEEEcCC
Q 041205 201 LGEYDCIILAALAGN--EE--E-------KAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEHEL-FDFKVLSIFHPT 268 (535)
Q Consensus 201 L~~FDvVfiaALVgm--~e--d-------K~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdpdl-~GFeil~v~hP~ 268 (535)
.+.||+|+.+..... .+ + -..+|+.+.++|+|||.|++....+-+ ++.+-..+ ..|....+..|.
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~---~~~~l~~l~~~f~~v~~~Kp~ 191 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG---FDEYLREIRSLFTKVKVRKPD 191 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC---HHHHHHHHHhCceEEEEECCc
Confidence 456999998642211 01 1 156899999999999999996543311 00000022 578887888875
Q ss_pred C
Q 041205 269 N 269 (535)
Q Consensus 269 ~ 269 (535)
.
T Consensus 192 s 192 (209)
T PRK11188 192 S 192 (209)
T ss_pred c
Confidence 5
No 114
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.03 E-value=2.9e-09 Score=104.09 Aligned_cols=107 Identities=25% Similarity=0.378 Sum_probs=82.9
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII 208 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf 208 (535)
..++.+|||+|||+ |.-++.++. +.++++|+|+|+++.+++.|++++. .+ ...++.|+++|+.+.. ..+.||+|+
T Consensus 106 ~~~~~~vLDiG~Gs-G~~~~~la~-~~~~~~v~~iDis~~~l~~a~~n~~-~~-~~~~i~~~~~d~~~~~-~~~~fD~Iv 180 (275)
T PRK09328 106 LKEPLRVLDLGTGS-GAIALALAK-ERPDAEVTAVDISPEALAVARRNAK-HG-LGARVEFLQGDWFEPL-PGGRFDLIV 180 (275)
T ss_pred ccCCCEEEEEcCcH-HHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHH-hC-CCCcEEEEEccccCcC-CCCceeEEE
Confidence 35788999999996 667778877 4678999999999999999999988 33 3468999999986432 235799998
Q ss_pred ecccc------------------------CC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 209 LAALA------------------------GN--EEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 209 iaALV------------------------gm--~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
..--. |. ...+..++.++.++|+|||.+++-.
T Consensus 181 ~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 181 SNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred ECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 73110 00 2445788999999999999999854
No 115
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.02 E-value=4e-09 Score=105.29 Aligned_cols=110 Identities=20% Similarity=0.300 Sum_probs=83.5
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC-c-CCCeEEEEccccccccC-CCCcce
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE-I-EKRMKFLTCDIMEVKEK-LGEYDC 206 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~-L-s~rI~Fi~GDA~el~~d-L~~FDv 206 (535)
..+++||+||||. |.++..+++ +.+..+|+++|+|+++++.|++.+...+. + ..+++++.+|+.+.... .+.||+
T Consensus 71 ~~p~~VL~iG~G~-G~~~~~ll~-~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 71 PNPKHVLVIGGGD-GGVLREVLK-HKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCCCEEEEEcCCc-hHHHHHHHh-CCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence 5678999999996 555556656 34567999999999999999998765431 1 25899999998765433 246999
Q ss_pred EEecccc--CChhh--HHHHHHHHHhhcccCeEEEEEcc
Q 041205 207 IILAALA--GNEEE--KAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 207 VfiaALV--gm~ed--K~~VL~eL~rvLKPGGvLVvRsa 241 (535)
|+++... +.... ..++++.+.+.|+|||++++...
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 9998763 21122 46889999999999999998743
No 116
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.01 E-value=1.4e-09 Score=115.09 Aligned_cols=108 Identities=17% Similarity=0.181 Sum_probs=83.8
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcC-CCeEEEEccccccccC----CCCc
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIE-KRMKFLTCDIMEVKEK----LGEY 204 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls-~rI~Fi~GDA~el~~d----L~~F 204 (535)
.++++|||+|||+++++ +..+. ....+|++||+|+.+++.|+++++..| ++ ++++|+++|+.+.... ...|
T Consensus 219 ~~g~rVLDlfsgtG~~~-l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ng-l~~~~v~~i~~D~~~~l~~~~~~~~~f 294 (396)
T PRK15128 219 VENKRVLNCFSYTGGFA-VSALM--GGCSQVVSVDTSQEALDIARQNVELNK-LDLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_pred cCCCeEEEeccCCCHHH-HHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCcEEEEEccHHHHHHHHHhcCCCC
Confidence 46899999999986664 44444 234599999999999999999999988 65 5899999999876532 2369
Q ss_pred ceEEeccccCC---------hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 205 DCIILAALAGN---------EEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 205 DvVfiaALVgm---------~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
|+|+++--.-. ...+..++....++|+|||+|++-+-
T Consensus 295 DlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99999833210 13567777788999999999998663
No 117
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=4.3e-09 Score=108.17 Aligned_cols=141 Identities=26% Similarity=0.310 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc
Q 041205 116 AKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM 195 (535)
Q Consensus 116 irlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~ 195 (535)
+.+=...+.++. .++++|||+|||+ |.=||..++ +.-..|+|+|+||-|++.|+.+++.-| +...++....+..
T Consensus 149 T~lcL~~Le~~~--~~g~~vlDvGcGS-GILaIAa~k--LGA~~v~g~DiDp~AV~aa~eNa~~N~-v~~~~~~~~~~~~ 222 (300)
T COG2264 149 TSLCLEALEKLL--KKGKTVLDVGCGS-GILAIAAAK--LGAKKVVGVDIDPQAVEAARENARLNG-VELLVQAKGFLLL 222 (300)
T ss_pred HHHHHHHHHHhh--cCCCEEEEecCCh-hHHHHHHHH--cCCceEEEecCCHHHHHHHHHHHHHcC-Cchhhhcccccch
Confidence 334445555544 4899999999995 888888877 333459999999999999999999988 5543434444443
Q ss_pred ccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcccccccccCCCCcc--ccCCcEEEEEEcCCC
Q 041205 196 EVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEH--ELFDFKVLSIFHPTN 269 (535)
Q Consensus 196 el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdp--dl~GFeil~v~hP~~ 269 (535)
+.+. .+.||+|+..-+. ..-..+...+.+.++|||++++. |+=.=-...|-. .-.||++..+.+..+
T Consensus 223 ~~~~-~~~~DvIVANILA---~vl~~La~~~~~~lkpgg~lIlS---GIl~~q~~~V~~a~~~~gf~v~~~~~~~e 291 (300)
T COG2264 223 EVPE-NGPFDVIVANILA---EVLVELAPDIKRLLKPGGRLILS---GILEDQAESVAEAYEQAGFEVVEVLEREE 291 (300)
T ss_pred hhcc-cCcccEEEehhhH---HHHHHHHHHHHHHcCCCceEEEE---eehHhHHHHHHHHHHhCCCeEeEEEecCC
Confidence 3222 1479999986555 46678999999999999999984 310000111111 236999988888765
No 118
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.98 E-value=6e-09 Score=108.28 Aligned_cols=103 Identities=18% Similarity=0.253 Sum_probs=81.2
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
....+|||+|||+ |.-++.+++ ..++.+|+++|+|+.|++.|++.++..+ + ..+++.+|+.+. ..+.||+|+.
T Consensus 195 ~~~g~VLDlGCG~-G~ls~~la~-~~p~~~v~~vDis~~Al~~A~~nl~~n~-l--~~~~~~~D~~~~--~~~~fDlIvs 267 (342)
T PRK09489 195 HTKGKVLDVGCGA-GVLSAVLAR-HSPKIRLTLSDVSAAALESSRATLAANG-L--EGEVFASNVFSD--IKGRFDMIIS 267 (342)
T ss_pred cCCCeEEEeccCc-CHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-C--CCEEEEcccccc--cCCCccEEEE
Confidence 4456899999996 566667776 3678899999999999999999999988 4 357888887642 2356999998
Q ss_pred ccccC--C---hhhHHHHHHHHHhhcccCeEEEEE
Q 041205 210 AALAG--N---EEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 210 aALVg--m---~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
.-..| . .....+++.++.++|+|||.+.+-
T Consensus 268 NPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 268 NPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred CCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 64433 1 345689999999999999988764
No 119
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.96 E-value=2.3e-09 Score=120.35 Aligned_cols=107 Identities=13% Similarity=0.229 Sum_probs=85.1
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcC-CCeEEEEccccccccCC-CCcceE
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIE-KRMKFLTCDIMEVKEKL-GEYDCI 207 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls-~rI~Fi~GDA~el~~dL-~~FDvV 207 (535)
.++++|||+|||+ |..++.+|.+ ...+|++||+|+.+++.|+++++..| ++ ++++|+++|+.+..... ..||+|
T Consensus 537 ~~g~rVLDlf~gt-G~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng-~~~~~v~~i~~D~~~~l~~~~~~fDlI 612 (702)
T PRK11783 537 AKGKDFLNLFAYT-GTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNG-LSGRQHRLIQADCLAWLKEAREQFDLI 612 (702)
T ss_pred cCCCeEEEcCCCC-CHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhC-CCccceEEEEccHHHHHHHcCCCcCEE
Confidence 4589999999997 5556777772 23469999999999999999999988 65 68999999998765433 469999
Q ss_pred Eecccc-----------CChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 208 ILAALA-----------GNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 208 fiaALV-----------gm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+++--. ....++..++..+.++|+|||++++-+
T Consensus 613 ilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 613 FIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred EECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 997321 013567889999999999999998854
No 120
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.96 E-value=9.1e-09 Score=101.92 Aligned_cols=105 Identities=11% Similarity=0.087 Sum_probs=84.2
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHH-------h-----hcCCcCCCeEEEEcccccc
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIV-------S-----SDDEIEKRMKFLTCDIMEV 197 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li-------~-----~lG~Ls~rI~Fi~GDA~el 197 (535)
.++.|||..||| -|.-+++||. .|.+|+|+|+++.+++.+.+-. . ... +.+|+|++||..++
T Consensus 42 ~~~~rvLvPgCG-kg~D~~~LA~---~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~--~~~i~~~~gD~f~l 115 (226)
T PRK13256 42 NDSSVCLIPMCG-CSIDMLFFLS---KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK--GDDIEIYVADIFNL 115 (226)
T ss_pred CCCCeEEEeCCC-ChHHHHHHHh---CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceec--cCceEEEEccCcCC
Confidence 457899999999 5999999999 6889999999999999986621 0 011 25799999999987
Q ss_pred cc---CCCCcceEEe-ccccCC-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 198 KE---KLGEYDCIIL-AALAGN-EEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 198 ~~---dL~~FDvVfi-aALVgm-~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
.. ..+.||.||- ++++.+ ...+.++.+++.+.|+|||.+++-.
T Consensus 116 ~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 116 PKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred CccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 53 2357999995 455556 7889999999999999999777654
No 121
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.95 E-value=9.5e-09 Score=100.40 Aligned_cols=103 Identities=20% Similarity=0.268 Sum_probs=74.8
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
..-.+++|+|||.+ .-+..||.+ -.+++++|+++.+++.||+..+.. .+|+|+++|+-+.. +.+.||+|.+
T Consensus 42 ~ry~~alEvGCs~G-~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~~----~~V~~~~~dvp~~~-P~~~FDLIV~ 112 (201)
T PF05401_consen 42 RRYRRALEVGCSIG-VLTERLAPR---CDRLLAVDISPRALARARERLAGL----PHVEWIQADVPEFW-PEGRFDLIVL 112 (201)
T ss_dssp SSEEEEEEE--TTS-HHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT-----SSEEEEES-TTT----SS-EEEEEE
T ss_pred cccceeEecCCCcc-HHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCCC----CCeEEEECcCCCCC-CCCCeeEEEE
Confidence 45589999999964 444567773 368999999999999999987654 37999999986543 3467999998
Q ss_pred ccccCC---hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 210 AALAGN---EEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 210 aALVgm---~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
+..... .++...+++.+...|+|||.||+-++
T Consensus 113 SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 113 SEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp ES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 754432 35677899999999999999999664
No 122
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.95 E-value=3.9e-09 Score=104.84 Aligned_cols=128 Identities=17% Similarity=0.160 Sum_probs=90.3
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC--CCCcceEE
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK--LGEYDCII 208 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d--L~~FDvVf 208 (535)
.+.+|||+|||+ |.-++.+++ ..++.+|+++|+|+++++.|+++++..| ++|+++|+.+.... .+.||+|+
T Consensus 86 ~~~~vLDlg~Gs-G~i~l~la~-~~~~~~v~~vDis~~al~~A~~N~~~~~-----~~~~~~D~~~~l~~~~~~~fDlVv 158 (251)
T TIGR03704 86 GTLVVVDLCCGS-GAVGAALAA-ALDGIELHAADIDPAAVRCARRNLADAG-----GTVHEGDLYDALPTALRGRVDILA 158 (251)
T ss_pred CCCEEEEecCch-HHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-----CEEEEeechhhcchhcCCCEeEEE
Confidence 356999999997 555566666 3678899999999999999999998766 37899998764321 14699999
Q ss_pred ecccc------C-C-------------------hhhHHHHHHHHHhhcccCeEEEEEcccccccccCCCC-cc-ccCCcE
Q 041205 209 LAALA------G-N-------------------EEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVV-EH-ELFDFK 260 (535)
Q Consensus 209 iaALV------g-m-------------------~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~V-dp-dl~GFe 260 (535)
++--. + + ..-..+++..+.++|+|||.+++-.... . .+.+ .. ...||+
T Consensus 159 ~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~--~--~~~v~~~l~~~g~~ 234 (251)
T TIGR03704 159 ANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER--Q--APLAVEAFARAGLI 234 (251)
T ss_pred ECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc--h--HHHHHHHHHHCCCC
Confidence 76311 0 0 1124588888899999999999865321 1 1111 11 236888
Q ss_pred EEEEEcCCC
Q 041205 261 VLSIFHPTN 269 (535)
Q Consensus 261 il~v~hP~~ 269 (535)
.....|++-
T Consensus 235 ~~~~~~~~~ 243 (251)
T TIGR03704 235 ARVASSEEL 243 (251)
T ss_pred ceeeEcccc
Confidence 877888775
No 123
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.93 E-value=9.5e-09 Score=109.89 Aligned_cols=107 Identities=18% Similarity=0.209 Sum_probs=81.6
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc-CCCCcceE
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-KLGEYDCI 207 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-dL~~FDvV 207 (535)
+.++.+|||||||+ |.-++.+++ ..++++|+++|+|++|++.|+++++..| .+++|+++|..+... ..+.||+|
T Consensus 249 l~~~~rVLDLGcGS-G~IaiaLA~-~~p~a~VtAVDiS~~ALe~AreNa~~~g---~rV~fi~gDl~e~~l~~~~~FDLI 323 (423)
T PRK14966 249 LPENGRVWDLGTGS-GAVAVTVAL-ERPDAFVRASDISPPALETARKNAADLG---ARVEFAHGSWFDTDMPSEGKWDII 323 (423)
T ss_pred cCCCCEEEEEeChh-hHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC---CcEEEEEcchhccccccCCCccEE
Confidence 34567999999996 555677776 3678999999999999999999999887 389999999865322 22469999
Q ss_pred Eecccc----------------------CC---hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 208 ILAALA----------------------GN---EEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 208 fiaALV----------------------gm---~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+..--. |- .+-+.++++++.++|+|||.+++-.
T Consensus 324 VSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 324 VSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred EECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 984211 10 1235678888889999999988744
No 124
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.88 E-value=3.2e-08 Score=102.06 Aligned_cols=121 Identities=17% Similarity=0.155 Sum_probs=82.7
Q ss_pred hhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC---cCCCe
Q 041205 111 NYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE---IEKRM 187 (535)
Q Consensus 111 NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~---Ls~rI 187 (535)
++...++.-...+.... ..++.+|||||||+ |..++.+++ .|.+|+|+|+++.|++.|++.++..+. -..++
T Consensus 125 ~~~~~v~~~l~~l~~~~-~~~~~~VLDlGcGt-G~~a~~la~---~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~ 199 (315)
T PLN02585 125 GHAQTVEKVLLWLAEDG-SLAGVTVCDAGCGT-GSLAIPLAL---EGAIVSASDISAAMVAEAERRAKEALAALPPEVLP 199 (315)
T ss_pred ChHHHHHHHHHHHHhcC-CCCCCEEEEecCCC-CHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcccccccccce
Confidence 44555443333333211 13578999999996 667788888 478999999999999999999877531 12478
Q ss_pred EEEEccccccccCCCCcceEEeccc-cCC-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 188 KFLTCDIMEVKEKLGEYDCIILAAL-AGN-EEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 188 ~Fi~GDA~el~~dL~~FDvVfiaAL-Vgm-~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+|.++|..++ .+.||+|++... .|+ .+....++..+.+ +.+||+++.-.
T Consensus 200 ~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~ 250 (315)
T PLN02585 200 KFEANDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFA 250 (315)
T ss_pred EEEEcchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeC
Confidence 9999997543 357999986533 344 3334567777775 56777766543
No 125
>PLN02823 spermine synthase
Probab=98.88 E-value=1.9e-08 Score=104.65 Aligned_cols=109 Identities=18% Similarity=0.270 Sum_probs=83.7
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcC-Cc-CCCeEEEEccccccccCC-CCcce
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDD-EI-EKRMKFLTCDIMEVKEKL-GEYDC 206 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG-~L-s~rI~Fi~GDA~el~~dL-~~FDv 206 (535)
..+++||.||+| .|.++..+.+ +.+..+|+.||+|+++++.|++.+...+ .+ ..|++++.+|+.+..... +.||+
T Consensus 102 ~~pk~VLiiGgG-~G~~~re~l~-~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 102 PNPKTVFIMGGG-EGSTAREVLR-HKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCCCEEEEECCC-chHHHHHHHh-CCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccE
Confidence 468999999999 5777777766 4566899999999999999999876421 02 379999999998876543 46999
Q ss_pred EEeccccCC--hhh----HHHHHH-HHHhhcccCeEEEEEc
Q 041205 207 IILAALAGN--EEE----KAKILG-HIRKYMKEGGVLLVRS 240 (535)
Q Consensus 207 VfiaALVgm--~ed----K~~VL~-eL~rvLKPGGvLVvRs 240 (535)
||+|..-.. -+. -.++++ .+.+.|+|||++++..
T Consensus 180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 999954311 011 356887 8999999999998854
No 126
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.88 E-value=2.1e-08 Score=98.39 Aligned_cols=134 Identities=17% Similarity=0.182 Sum_probs=92.7
Q ss_pred HHHhHhhccCCCccccccCccchhhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCCh
Q 041205 88 EFATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDE 167 (535)
Q Consensus 88 h~A~~Lls~~~pl~~L~~FpYy~NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDp 167 (535)
+|-.+=-++.-+|+.-+-.|....|..- +...++.|||..||| -|+-+++||. .|.+|+|||+++
T Consensus 5 ~W~~~w~~~~~~w~~~~~~p~L~~~~~~-----------l~~~~~~rvLvPgCG-~g~D~~~La~---~G~~VvGvDls~ 69 (218)
T PF05724_consen 5 FWEERWQEGQTPWDQGEPNPALVEYLDS-----------LALKPGGRVLVPGCG-KGYDMLWLAE---QGHDVVGVDLSP 69 (218)
T ss_dssp HHHHHHHTT--TT--TTSTHHHHHHHHH-----------HTTSTSEEEEETTTT-TSCHHHHHHH---TTEEEEEEES-H
T ss_pred HHHHHHhcCCCCCCCCCCCHHHHHHHHh-----------cCCCCCCeEEEeCCC-ChHHHHHHHH---CCCeEEEEecCH
Confidence 3444444455666655555554333221 234678899999999 5899999999 689999999999
Q ss_pred hHHHHHHHHHhh------cCC----cCCCeEEEEccccccccCC-CCcceEE-eccccCC-hhhHHHHHHHHHhhcccCe
Q 041205 168 TANNLARRIVSS------DDE----IEKRMKFLTCDIMEVKEKL-GEYDCII-LAALAGN-EEEKAKILGHIRKYMKEGG 234 (535)
Q Consensus 168 eAIelAR~li~~------lG~----Ls~rI~Fi~GDA~el~~dL-~~FDvVf-iaALVgm-~edK~~VL~eL~rvLKPGG 234 (535)
.|++.+.+-... .+. -..+|+|.+||..++.... +.||+|| -.+++.+ .+...++.+++.+.|+|||
T Consensus 70 ~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g 149 (218)
T PF05724_consen 70 TAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGG 149 (218)
T ss_dssp HHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEE
T ss_pred HHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCC
Confidence 999998443211 110 1247999999999877654 4699999 4455555 7899999999999999999
Q ss_pred EE
Q 041205 235 VL 236 (535)
Q Consensus 235 vL 236 (535)
.+
T Consensus 150 ~~ 151 (218)
T PF05724_consen 150 RG 151 (218)
T ss_dssp EE
T ss_pred cE
Confidence 93
No 127
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.88 E-value=1.2e-08 Score=100.82 Aligned_cols=109 Identities=18% Similarity=0.278 Sum_probs=83.4
Q ss_pred hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeE-EEEccccccc-cCCCC
Q 041205 126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMK-FLTCDIMEVK-EKLGE 203 (535)
Q Consensus 126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~-Fi~GDA~el~-~dL~~ 203 (535)
+++-...-.||||||||+ +-+-+-. .-|+++||++|-++.|-+.|.+-+++.- ..++. |+.|++.+++ -.+++
T Consensus 71 ~~gk~~K~~vLEvgcGtG--~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k--~~~~~~fvva~ge~l~~l~d~s 145 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTG--ANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKK--PLQVERFVVADGENLPQLADGS 145 (252)
T ss_pred HhcccCccceEEecccCC--CCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhcc--CcceEEEEeechhcCcccccCC
Confidence 443233345799999976 3232212 2379999999999999999999988765 24666 9999999877 34467
Q ss_pred cceEEeccccCC-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 204 YDCIILAALAGN-EEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 204 FDvVfiaALVgm-~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
||+|+.. ++-+ .++..+.|+++.|+|||||++++-.
T Consensus 146 ~DtVV~T-lvLCSve~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 146 YDTVVCT-LVLCSVEDPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred eeeEEEE-EEEeccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 9999875 4433 6899999999999999999998865
No 128
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.87 E-value=2.1e-08 Score=92.75 Aligned_cols=104 Identities=15% Similarity=0.118 Sum_probs=76.2
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC 206 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv 206 (535)
+.+.++++|||||||++.+| ..+++ .+.+|+++|+|+.+++.+++.+... .+++++++|+.++......||.
T Consensus 9 ~~~~~~~~vLEiG~G~G~lt-~~l~~---~~~~v~~vE~~~~~~~~~~~~~~~~----~~v~ii~~D~~~~~~~~~~~d~ 80 (169)
T smart00650 9 ANLRPGDTVLEIGPGKGALT-EELLE---RAARVTAIEIDPRLAPRLREKFAAA----DNLTVIHGDALKFDLPKLQPYK 80 (169)
T ss_pred cCCCCcCEEEEECCCccHHH-HHHHh---cCCeEEEEECCHHHHHHHHHHhccC----CCEEEEECchhcCCccccCCCE
Confidence 44567889999999975555 55666 2689999999999999999988542 4899999999887655446999
Q ss_pred EEeccccCChhhHHHHHHHHHhh--cccCeEEEEEcc
Q 041205 207 IILAALAGNEEEKAKILGHIRKY--MKEGGVLLVRSA 241 (535)
Q Consensus 207 VfiaALVgm~edK~~VL~eL~rv--LKPGGvLVvRsa 241 (535)
|+..-..+. -..++..+.+. +.+||++++-..
T Consensus 81 vi~n~Py~~---~~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 81 VVGNLPYNI---STPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred EEECCCccc---HHHHHHHHHhcCCCcceEEEEEEHH
Confidence 987644432 23455555443 347888888653
No 129
>PTZ00146 fibrillarin; Provisional
Probab=98.87 E-value=1.9e-08 Score=103.23 Aligned_cols=143 Identities=10% Similarity=0.072 Sum_probs=92.1
Q ss_pred CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc---ccCCCCc
Q 041205 128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV---KEKLGEY 204 (535)
Q Consensus 128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el---~~dL~~F 204 (535)
.+.++++|||+|||| |+++..+|...-+...|++||+++.+.+.-...+... .+|.++.+|+... ......|
T Consensus 129 ~IkpG~~VLDLGaG~-G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r----~NI~~I~~Da~~p~~y~~~~~~v 203 (293)
T PTZ00146 129 PIKPGSKVLYLGAAS-GTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR----PNIVPIIEDARYPQKYRMLVPMV 203 (293)
T ss_pred ccCCCCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----CCCEEEECCccChhhhhcccCCC
Confidence 468899999999997 6677788884344579999999987664444443321 4689999998641 1123469
Q ss_pred ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcccccccc--cCCCCc-----c---ccCCcEEEEEEc--CCCcce
Q 041205 205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAF--LYPVVE-----H---ELFDFKVLSIFH--PTNDVI 272 (535)
Q Consensus 205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~f--LYP~Vd-----p---dl~GFeil~v~h--P~~eVI 272 (535)
|+||++... ..+...++.++.++|||||.|++.-. .+.+ -.|+-+ . .-.||++...++ |...-
T Consensus 204 DvV~~Dva~--pdq~~il~~na~r~LKpGG~~vI~ik--a~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~- 278 (293)
T PTZ00146 204 DVIFADVAQ--PDQARIVALNAQYFLKNGGHFIISIK--ANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERD- 278 (293)
T ss_pred CEEEEeCCC--cchHHHHHHHHHHhccCCCEEEEEEe--ccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCccCC-
Confidence 999998643 13444555689999999999998311 1111 111101 0 125899887655 44422
Q ss_pred eeeEEEec
Q 041205 273 NSVVLLQL 280 (535)
Q Consensus 273 NSVVvARK 280 (535)
.++|+.+.
T Consensus 279 h~~v~~~~ 286 (293)
T PTZ00146 279 HAVVIGVY 286 (293)
T ss_pred cEEEEEEE
Confidence 34666554
No 130
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.86 E-value=2.5e-08 Score=99.18 Aligned_cols=109 Identities=20% Similarity=0.285 Sum_probs=83.8
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcC--CcCCCeEEEEccccccccCCC--Ccc
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDD--EIEKRMKFLTCDIMEVKEKLG--EYD 205 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG--~Ls~rI~Fi~GDA~el~~dL~--~FD 205 (535)
..+++||.||.|. |.++-.+.+ |.+..+|+.||+|++.++.|++.+.... .-+.|++++.+|+........ .||
T Consensus 75 ~~p~~VLiiGgG~-G~~~~ell~-~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGGD-GGTARELLK-HPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp SST-EEEEEESTT-SHHHHHHTT-STT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CCcCceEEEcCCC-hhhhhhhhh-cCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCccc
Confidence 5799999999994 666666666 5556899999999999999999877532 113699999999987766543 599
Q ss_pred eEEeccccCC-hhh---HHHHHHHHHhhcccCeEEEEEc
Q 041205 206 CIILAALAGN-EEE---KAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 206 vVfiaALVgm-~ed---K~~VL~eL~rvLKPGGvLVvRs 240 (535)
+|++++.-.. ... -.++++.+.+.|+|||++++..
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 9999876532 122 4799999999999999999976
No 131
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.86 E-value=2.8e-08 Score=101.31 Aligned_cols=135 Identities=13% Similarity=0.142 Sum_probs=89.6
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC-CCCcceEE
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK-LGEYDCII 208 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d-L~~FDvVf 208 (535)
.++.+|||+|||+ |.-++.+|+ .+.+|+|||+++++++.|+++++..| + ++++|+++|+.++... .+.||+|+
T Consensus 172 ~~~~~VLDl~cG~-G~~sl~la~---~~~~V~gvD~s~~av~~A~~n~~~~~-l-~~v~~~~~D~~~~~~~~~~~~D~Vv 245 (315)
T PRK03522 172 LPPRSMWDLFCGV-GGFGLHCAT---PGMQLTGIEISAEAIACAKQSAAELG-L-TNVQFQALDSTQFATAQGEVPDLVL 245 (315)
T ss_pred cCCCEEEEccCCC-CHHHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHHcC-C-CceEEEEcCHHHHHHhcCCCCeEEE
Confidence 3578999999996 566688888 57899999999999999999999999 6 6899999999876542 24699999
Q ss_pred ecccc-CChhhHHHHHHHHHhhcccCeEEEEEc-ccccccccCCCCcc-ccCCcEEEE--EEc--CCCcceeeeEEEec
Q 041205 209 LAALA-GNEEEKAKILGHIRKYMKEGGVLLVRS-AKGARAFLYPVVEH-ELFDFKVLS--IFH--PTNDVINSVVLLQL 280 (535)
Q Consensus 209 iaALV-gm~edK~~VL~eL~rvLKPGGvLVvRs-a~GlR~fLYP~Vdp-dl~GFeil~--v~h--P~~eVINSVVvARK 280 (535)
++--- |+ ...+++.+.+ ++|++++.+.- +..+.. |. .+.||++.. .++ |...-+-++++.++
T Consensus 246 ~dPPr~G~---~~~~~~~l~~-~~~~~ivyvsc~p~t~~r------d~~~l~~y~~~~~~~~DmFP~T~HvE~v~~l~r 314 (315)
T PRK03522 246 VNPPRRGI---GKELCDYLSQ-MAPRFILYSSCNAQTMAK------DLAHLPGYRIERVQLFDMFPHTAHYEVLTLLVR 314 (315)
T ss_pred ECCCCCCc---cHHHHHHHHH-cCCCeEEEEECCcccchh------HHhhccCcEEEEEEEeccCCCCCeEEEEEEEEc
Confidence 98332 21 2234444443 67766554422 111100 11 224676643 222 55455567776654
No 132
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.85 E-value=6.7e-09 Score=96.06 Aligned_cols=80 Identities=13% Similarity=0.167 Sum_probs=66.7
Q ss_pred EEEeCChhHHHHHHHHHhh--cCCcCCCeEEEEccccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205 161 DNIDIDETANNLARRIVSS--DDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 161 tGIDIDpeAIelAR~li~~--lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVv 238 (535)
+|+|+|++|++.|++..+. .+ ...+|+|++||+.+++.+.+.||+|++....+..+++.+++++++|+|||||.|++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~-~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS-CYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc-CCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEE
Confidence 5899999999999876653 23 23689999999999888777899999875555468999999999999999999987
Q ss_pred Ecc
Q 041205 239 RSA 241 (535)
Q Consensus 239 Rsa 241 (535)
-+.
T Consensus 80 ~d~ 82 (160)
T PLN02232 80 LDF 82 (160)
T ss_pred EEC
Confidence 653
No 133
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=6.9e-08 Score=97.88 Aligned_cols=102 Identities=28% Similarity=0.441 Sum_probs=81.6
Q ss_pred EEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec---
Q 041205 134 KVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA--- 210 (535)
Q Consensus 134 RVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia--- 210 (535)
+|+|||||+ |.=|+.+|. ..+.+.|+++|+|++|++.|++++...| + .++.++.+|..+-.. +.||+|+..
T Consensus 113 ~ilDlGTGS-G~iai~la~-~~~~~~V~a~Dis~~Al~~A~~Na~~~~-l-~~~~~~~~dlf~~~~--~~fDlIVsNPPY 186 (280)
T COG2890 113 RILDLGTGS-GAIAIALAK-EGPDAEVIAVDISPDALALARENAERNG-L-VRVLVVQSDLFEPLR--GKFDLIVSNPPY 186 (280)
T ss_pred cEEEecCCh-HHHHHHHHh-hCcCCeEEEEECCHHHHHHHHHHHHHcC-C-ccEEEEeeecccccC--CceeEEEeCCCC
Confidence 899999996 777788888 5778999999999999999999999999 6 778888887654322 268888642
Q ss_pred --c-----------------ccC--C-hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 211 --A-----------------LAG--N-EEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 211 --A-----------------LVg--m-~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
. +++ . .+-+.+++.++.++|+|||.+++...
T Consensus 187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 1 111 1 35678899999999999999999875
No 134
>PRK03612 spermidine synthase; Provisional
Probab=98.85 E-value=1e-08 Score=111.60 Aligned_cols=110 Identities=19% Similarity=0.311 Sum_probs=81.6
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHH--HhhcC--Cc-CCCeEEEEccccccccCC-CC
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRI--VSSDD--EI-EKRMKFLTCDIMEVKEKL-GE 203 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~l--i~~lG--~L-s~rI~Fi~GDA~el~~dL-~~ 203 (535)
.++++||+||||. |.++..+++ +.+..+|++||+|+++++.|++. +.... .+ +.+++++.+|+.+..... +.
T Consensus 296 ~~~~rVL~IG~G~-G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~ 373 (521)
T PRK03612 296 ARPRRVLVLGGGD-GLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEK 373 (521)
T ss_pred CCCCeEEEEcCCc-cHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCC
Confidence 5789999999995 667777766 33338999999999999999993 32211 02 258999999998755433 56
Q ss_pred cceEEeccccCChh-----hHHHHHHHHHhhcccCeEEEEEcc
Q 041205 204 YDCIILAALAGNEE-----EKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 204 FDvVfiaALVgm~e-----dK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
||+|+++......+ -..++++.+.++|+|||++++...
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 99999985432111 124689999999999999998653
No 135
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.84 E-value=2.9e-08 Score=96.22 Aligned_cols=124 Identities=6% Similarity=0.013 Sum_probs=84.6
Q ss_pred hHHhHHHHHHHHHHhh-CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEE
Q 041205 112 YVKLAKLEYGALIENT-GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFL 190 (535)
Q Consensus 112 Yv~LirlE~~lL~~~~-~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi 190 (535)
|.+.+..-.+.+...+ ....+.+|||+|||++.++...+++ ...+|++||+|+++++.++++++..| + ++++|+
T Consensus 33 ~Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr---~a~~V~~vE~~~~a~~~a~~Nl~~~~-~-~~v~~~ 107 (199)
T PRK10909 33 LRPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSR---YAAGATLLEMDRAVAQQLIKNLATLK-A-GNARVV 107 (199)
T ss_pred cCcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHc---CCCEEEEEECCHHHHHHHHHHHHHhC-C-CcEEEE
Confidence 3444444433333322 2246789999999975444334555 24799999999999999999999999 5 589999
Q ss_pred EccccccccC-CCCcceEEeccccCChhhHHHHHHHHHhh--cccCeEEEEEcc
Q 041205 191 TCDIMEVKEK-LGEYDCIILAALAGNEEEKAKILGHIRKY--MKEGGVLLVRSA 241 (535)
Q Consensus 191 ~GDA~el~~d-L~~FDvVfiaALVgm~edK~~VL~eL~rv--LKPGGvLVvRsa 241 (535)
++|+.+.... ...||+||++--... .-...+++.+... ++|++++++...
T Consensus 108 ~~D~~~~l~~~~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 108 NTNALSFLAQPGTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred EchHHHHHhhcCCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 9999875432 235999999854211 1244556655553 788998888643
No 136
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.83 E-value=3e-08 Score=101.11 Aligned_cols=110 Identities=19% Similarity=0.293 Sum_probs=88.9
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcC--CcCCCeEEEEccccccccCCC-Ccce
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDD--EIEKRMKFLTCDIMEVKEKLG-EYDC 206 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG--~Ls~rI~Fi~GDA~el~~dL~-~FDv 206 (535)
..+++||-||.|. |.|+..+.+ |.+-.+++.||||++.++.||+.+.... ....|++++.+|+.++..+.. .||+
T Consensus 75 ~~pk~VLiiGgGd-G~tlRevlk-h~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 75 PNPKRVLIIGGGD-GGTLREVLK-HLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred CCCCeEEEECCCc-cHHHHHHHh-cCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence 4558999999996 566666666 6778999999999999999999987643 224799999999998887665 4999
Q ss_pred EEeccccCC----hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 207 IILAALAGN----EEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 207 VfiaALVgm----~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
|++|+.-+- .---..+++.+++.|+|||++++.+.
T Consensus 153 Ii~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~ 191 (282)
T COG0421 153 IIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAG 191 (282)
T ss_pred EEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecC
Confidence 999976531 01238999999999999999999843
No 137
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.82 E-value=5.6e-08 Score=103.47 Aligned_cols=145 Identities=14% Similarity=0.172 Sum_probs=95.0
Q ss_pred HHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc--
Q 041205 122 ALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-- 199 (535)
Q Consensus 122 lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-- 199 (535)
.+...+.+.++.+|||+|||+ |.-++.+|+ .+.+|+|+|+|++|++.|+++++..| + ++++|+++|+.+...
T Consensus 288 ~vl~~l~~~~~~~VLDlgcGt-G~~sl~la~---~~~~V~gvD~s~~al~~A~~n~~~~~-~-~~v~~~~~d~~~~l~~~ 361 (443)
T PRK13168 288 RALEWLDPQPGDRVLDLFCGL-GNFTLPLAR---QAAEVVGVEGVEAMVERARENARRNG-L-DNVTFYHANLEEDFTDQ 361 (443)
T ss_pred HHHHHhcCCCCCEEEEEeccC-CHHHHHHHH---hCCEEEEEeCCHHHHHHHHHHHHHcC-C-CceEEEEeChHHhhhhh
Confidence 333344456789999999997 555677887 34799999999999999999999988 5 579999999976432
Q ss_pred --CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE-cccccccccCCCCcc-ccCCcEEEE--EEc--CCCcc
Q 041205 200 --KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR-SAKGARAFLYPVVEH-ELFDFKVLS--IFH--PTNDV 271 (535)
Q Consensus 200 --dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR-sa~GlR~fLYP~Vdp-dl~GFeil~--v~h--P~~eV 271 (535)
..+.||+|+++--- ....+++..+.+ ++|++++.+- ++..+.+ .+.. .-.||++.. -++ |...-
T Consensus 362 ~~~~~~fD~Vi~dPPr---~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaR----Dl~~L~~~gY~l~~i~~~DmFP~T~H 433 (443)
T PRK13168 362 PWALGGFDKVLLDPPR---AGAAEVMQALAK-LGPKRIVYVSCNPATLAR----DAGVLVEAGYRLKRAGMLDMFPHTGH 433 (443)
T ss_pred hhhcCCCCEEEECcCC---cChHHHHHHHHh-cCCCeEEEEEeChHHhhc----cHHHHhhCCcEEEEEEEeccCCCCCc
Confidence 12469999998433 112356666666 6888766553 2211100 0000 115787743 222 54455
Q ss_pred eeeeEEEec
Q 041205 272 INSVVLLQL 280 (535)
Q Consensus 272 INSVVvARK 280 (535)
+-+|++.+|
T Consensus 434 vE~v~lL~r 442 (443)
T PRK13168 434 VESMALFER 442 (443)
T ss_pred EEEEEEEEe
Confidence 577777665
No 138
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.77 E-value=6.8e-08 Score=102.03 Aligned_cols=105 Identities=19% Similarity=0.196 Sum_probs=80.2
Q ss_pred HHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC---
Q 041205 124 IENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK--- 200 (535)
Q Consensus 124 ~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d--- 200 (535)
...+.+.++++|||+|||+ |..++.+|+ ...+|+|||+|+++++.|+++++..| + ++++|+++|+.+....
T Consensus 285 ~~~l~~~~~~~vLDl~cG~-G~~sl~la~---~~~~V~~vE~~~~av~~a~~n~~~~~-~-~nv~~~~~d~~~~l~~~~~ 358 (431)
T TIGR00479 285 LEALELQGEELVVDAYCGV-GTFTLPLAK---QAKSVVGIEVVPESVEKAQQNAELNG-I-ANVEFLAGTLETVLPKQPW 358 (431)
T ss_pred HHHhccCCCCEEEEcCCCc-CHHHHHHHH---hCCEEEEEEcCHHHHHHHHHHHHHhC-C-CceEEEeCCHHHHHHHHHh
Confidence 3334456779999999996 677788988 34689999999999999999999988 5 6899999999764322
Q ss_pred -CCCcceEEecccc-CChhhHHHHHHHHHhhcccCeEEEE
Q 041205 201 -LGEYDCIILAALA-GNEEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 201 -L~~FDvVfiaALV-gm~edK~~VL~eL~rvLKPGGvLVv 238 (535)
...||+|+++--- |+ ...+++.+.+ ++|++++.+
T Consensus 359 ~~~~~D~vi~dPPr~G~---~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 359 AGQIPDVLLLDPPRKGC---AAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred cCCCCCEEEECcCCCCC---CHHHHHHHHh-cCCCEEEEE
Confidence 2359999998442 32 4667776665 789886655
No 139
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.76 E-value=3.9e-09 Score=89.97 Aligned_cols=101 Identities=19% Similarity=0.253 Sum_probs=48.9
Q ss_pred EEEccCCChhhHHHHHhhcCCCc--EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC--CCcceEEecc
Q 041205 136 AFVGSGPMPLTSIILASQHMKST--HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL--GEYDCIILAA 211 (535)
Q Consensus 136 LeIGSGplPlTAI~LAk~~l~Ga--~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL--~~FDvVfiaA 211 (535)
+|||+. .|.|++++++...++. ++++||..+. .+.+++++++.+ +..+++|+++|..+....+ ..||+||+|+
T Consensus 1 lEiG~~-~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~-~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTY-SGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG-LSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp ---------------------------EEEESS-------------GG-G-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred Cccccc-cccccccccccccccccCCEEEEECCCc-ccccchhhhhcC-CCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 689997 6899999988544443 7999999997 556677777778 7789999999997765443 4799999997
Q ss_pred ccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 212 LAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 212 LVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
... .+.....++.+.++|+|||++++++
T Consensus 78 ~H~-~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 78 DHS-YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCC-HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 642 3566778888999999999999976
No 140
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.76 E-value=2.2e-08 Score=97.56 Aligned_cols=107 Identities=23% Similarity=0.419 Sum_probs=83.8
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE--
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII-- 208 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf-- 208 (535)
...||||+|||- |.-..-|++.-+ ....+|||.+++++++|..++++.| +++.|+|.+.|+.+-.+..+.||+|+
T Consensus 67 ~A~~VlDLGtGN-G~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~-~~n~I~f~q~DI~~~~~~~~qfdlvlDK 143 (227)
T KOG1271|consen 67 QADRVLDLGTGN-GHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDG-FSNEIRFQQLDITDPDFLSGQFDLVLDK 143 (227)
T ss_pred cccceeeccCCc-hHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcC-CCcceeEEEeeccCCcccccceeEEeec
Confidence 445999999995 777788887434 3459999999999999999999999 78889999999986444446688887
Q ss_pred --ec--cccCC-hhhH-HHHHHHHHhhcccCeEEEEEc
Q 041205 209 --LA--ALAGN-EEEK-AKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 209 --ia--ALVgm-~edK-~~VL~eL~rvLKPGGvLVvRs 240 (535)
.+ ++-++ ...| .-++..+.+.|+|||++++-+
T Consensus 144 GT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS 181 (227)
T KOG1271|consen 144 GTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS 181 (227)
T ss_pred CceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe
Confidence 22 22234 2333 567888999999999999965
No 141
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.74 E-value=5e-08 Score=92.01 Aligned_cols=100 Identities=15% Similarity=0.179 Sum_probs=72.7
Q ss_pred HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-cc
Q 041205 120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VK 198 (535)
Q Consensus 120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~ 198 (535)
+..+...+ .++++|||||||++. .+..+++. .+..++|||+++++++.|++ . +++|+++|+.+ ++
T Consensus 4 ~~~i~~~i--~~~~~iLDiGcG~G~-~~~~l~~~--~~~~~~giD~s~~~i~~a~~----~-----~~~~~~~d~~~~l~ 69 (194)
T TIGR02081 4 LESILNLI--PPGSRVLDLGCGDGE-LLALLRDE--KQVRGYGIEIDQDGVLACVA----R-----GVNVIQGDLDEGLE 69 (194)
T ss_pred HHHHHHhc--CCCCEEEEeCCCCCH-HHHHHHhc--cCCcEEEEeCCHHHHHHHHH----c-----CCeEEEEEhhhccc
Confidence 34444433 467899999999754 45666652 46789999999999988863 2 36889999865 22
Q ss_pred -cCCCCcceEEeccccCChhhHHHHHHHHHhhcccC
Q 041205 199 -EKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEG 233 (535)
Q Consensus 199 -~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPG 233 (535)
...+.||+|++....+..++...+++++.+.++++
T Consensus 70 ~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 70 AFPDKSFDYVILSQTLQATRNPEEILDEMLRVGRHA 105 (194)
T ss_pred ccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCeE
Confidence 33457999998766555578899999998876653
No 142
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.72 E-value=1.5e-07 Score=97.21 Aligned_cols=116 Identities=14% Similarity=0.158 Sum_probs=87.0
Q ss_pred HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205 120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE 199 (535)
Q Consensus 120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~ 199 (535)
+..+..+++--.+++|||||||. ||=++.|+.+ ....|+|||-++-.+-..+-+-+-+| ....+.++---+.+++.
T Consensus 104 W~rl~p~l~~L~gk~VLDIGC~n-GY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg-~~~~~~~lplgvE~Lp~ 179 (315)
T PF08003_consen 104 WDRLLPHLPDLKGKRVLDIGCNN-GYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLG-QDPPVFELPLGVEDLPN 179 (315)
T ss_pred HHHHHhhhCCcCCCEEEEecCCC-cHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhC-CCccEEEcCcchhhccc
Confidence 45566666446799999999995 8888999882 33469999999998887766666666 33344443234456665
Q ss_pred CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
.+.||+||.....=+..++...|.+++..|+|||.+++.+
T Consensus 180 -~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 180 -LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred -cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 7789999987655225889999999999999999999866
No 143
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.6e-07 Score=96.75 Aligned_cols=113 Identities=20% Similarity=0.274 Sum_probs=85.1
Q ss_pred HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205 121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK 200 (535)
Q Consensus 121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d 200 (535)
.+|...+....+.+|||+|||. |.=++.+|+ ..|..+|+-+|+|..|++.||+++..-+ ++ +..+...|..+-..+
T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~-Gvlg~~la~-~~p~~~vtmvDvn~~Av~~ar~Nl~~N~-~~-~~~v~~s~~~~~v~~ 223 (300)
T COG2813 148 RLLLETLPPDLGGKVLDLGCGY-GVLGLVLAK-KSPQAKLTLVDVNARAVESARKNLAANG-VE-NTEVWASNLYEPVEG 223 (300)
T ss_pred HHHHHhCCccCCCcEEEeCCCc-cHHHHHHHH-hCCCCeEEEEecCHHHHHHHHHhHHHcC-CC-ccEEEEecccccccc
Confidence 5556666545566999999995 666677888 5789999999999999999999999888 44 336777777643332
Q ss_pred CCCcceEEeccccCC--hh---hHHHHHHHHHhhcccCeEEEEE
Q 041205 201 LGEYDCIILAALAGN--EE---EKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 201 L~~FDvVfiaALVgm--~e---dK~~VL~eL~rvLKPGGvLVvR 239 (535)
.||+|+..--.|- .- --.+++....++|++||.|-+-
T Consensus 224 --kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iV 265 (300)
T COG2813 224 --KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIV 265 (300)
T ss_pred --cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEE
Confidence 7999998755532 11 2248999999999999966543
No 144
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.70 E-value=1.9e-07 Score=97.74 Aligned_cols=100 Identities=11% Similarity=0.090 Sum_probs=76.5
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-CCcceEE
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-GEYDCII 208 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-~~FDvVf 208 (535)
.++.+|||+|||. |.-++.+|. .+.+|+|||+|+.+++.|+++++..| + ++++|+++|+.+..... ..||+|+
T Consensus 232 ~~~~~vLDL~cG~-G~~~l~la~---~~~~v~~vE~~~~av~~a~~N~~~~~-~-~~~~~~~~d~~~~~~~~~~~~D~vi 305 (374)
T TIGR02085 232 IPVTQMWDLFCGV-GGFGLHCAG---PDTQLTGIEIESEAIACAQQSAQMLG-L-DNLSFAALDSAKFATAQMSAPELVL 305 (374)
T ss_pred cCCCEEEEccCCc-cHHHHHHhh---cCCeEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEECCHHHHHHhcCCCCCEEE
Confidence 4568999999996 555577776 56899999999999999999999999 5 58999999997755332 4599999
Q ss_pred eccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205 209 LAALAGNEEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 209 iaALVgm~edK~~VL~eL~rvLKPGGvLVv 238 (535)
++--- ..-...+++.+.+ ++|++++.+
T Consensus 306 ~DPPr--~G~~~~~l~~l~~-~~p~~ivyv 332 (374)
T TIGR02085 306 VNPPR--RGIGKELCDYLSQ-MAPKFILYS 332 (374)
T ss_pred ECCCC--CCCcHHHHHHHHh-cCCCeEEEE
Confidence 98332 1123456666654 788876665
No 145
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.69 E-value=2e-07 Score=90.51 Aligned_cols=103 Identities=25% Similarity=0.348 Sum_probs=81.0
Q ss_pred HHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCC
Q 041205 124 IENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGE 203 (535)
Q Consensus 124 ~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~ 203 (535)
.......+.++|+|||+|. |.-++-+++ .+|+.+++..|. |+.++.+++ . +||+|+.||..+ +...
T Consensus 93 ~~~~d~~~~~~vvDvGGG~-G~~~~~l~~-~~P~l~~~v~Dl-p~v~~~~~~-----~---~rv~~~~gd~f~---~~P~ 158 (241)
T PF00891_consen 93 LEAFDFSGFKTVVDVGGGS-GHFAIALAR-AYPNLRATVFDL-PEVIEQAKE-----A---DRVEFVPGDFFD---PLPV 158 (241)
T ss_dssp HHHSTTTTSSEEEEET-TT-SHHHHHHHH-HSTTSEEEEEE--HHHHCCHHH-----T---TTEEEEES-TTT---CCSS
T ss_pred hccccccCccEEEeccCcc-hHHHHHHHH-HCCCCcceeecc-Hhhhhcccc-----c---cccccccccHHh---hhcc
Confidence 3334557778999999996 555566666 489999999999 999999998 3 699999999863 2333
Q ss_pred cceEEeccccCC--hhhHHHHHHHHHhhcccC--eEEEEEc
Q 041205 204 YDCIILAALAGN--EEEKAKILGHIRKYMKEG--GVLLVRS 240 (535)
Q Consensus 204 FDvVfiaALVgm--~edK~~VL~eL~rvLKPG--GvLVvRs 240 (535)
+|+|++...+|. .++-..+|+++++.|+|| |+|++-+
T Consensus 159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 999999877765 778889999999999999 9998866
No 146
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.68 E-value=1.8e-07 Score=89.95 Aligned_cols=98 Identities=22% Similarity=0.267 Sum_probs=83.9
Q ss_pred EEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecccc
Q 041205 134 KVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALA 213 (535)
Q Consensus 134 RVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALV 213 (535)
+|+||||| .|+++|.+|= .+|+.+|+-+|-....+..=+..++.+| + ++++++++.+.+ ......||+|+.-|..
T Consensus 51 ~~lDiGSG-aGfPGipLaI-~~p~~~~~LvEs~~KK~~FL~~~~~~L~-L-~nv~v~~~R~E~-~~~~~~fd~v~aRAv~ 125 (184)
T PF02527_consen 51 KVLDIGSG-AGFPGIPLAI-ARPDLQVTLVESVGKKVAFLKEVVRELG-L-SNVEVINGRAEE-PEYRESFDVVTARAVA 125 (184)
T ss_dssp EEEEETST-TTTTHHHHHH-H-TTSEEEEEESSHHHHHHHHHHHHHHT---SSEEEEES-HHH-TTTTT-EEEEEEESSS
T ss_pred eEEecCCC-CCChhHHHHH-hCCCCcEEEEeCCchHHHHHHHHHHHhC-C-CCEEEEEeeecc-cccCCCccEEEeehhc
Confidence 89999999 5999999988 6899999999999999999999999999 6 589999999987 3344579999998776
Q ss_pred CChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 214 GNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 214 gm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+-..+++-+.+.+++||.++.--
T Consensus 126 ----~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 126 ----PLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp ----SHHHHHHHHGGGEEEEEEEEEEE
T ss_pred ----CHHHHHHHHHHhcCCCCEEEEEc
Confidence 56799999999999999888743
No 147
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.65 E-value=1.8e-07 Score=101.32 Aligned_cols=135 Identities=13% Similarity=0.107 Sum_probs=97.6
Q ss_pred cccCccchhhHHhHHHHHHHHHH-hh--CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh
Q 041205 103 LNRFPYYENYVKLAKLEYGALIE-NT--GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSS 179 (535)
Q Consensus 103 L~~FpYy~NYv~LirlE~~lL~~-~~--~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~ 179 (535)
+...|+|..-.--++.+-..+.. .+ ...++++|||+++||+|-|+.+. ..+-..+.|+++|+++.++...++++++
T Consensus 82 ~~~~~~~~~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la-~~l~~~g~lvA~D~~~~R~~~L~~nl~r 160 (470)
T PRK11933 82 LGNTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIA-ALMNNQGAIVANEYSASRVKVLHANISR 160 (470)
T ss_pred cccChHHHCCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHH-HHcCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 34555553322233444444432 23 44789999999999988886554 4233457999999999999999999999
Q ss_pred cCCcCCCeEEEEccccccccCC-CCcceEEecccc---CC-hhhH------------------HHHHHHHHhhcccCeEE
Q 041205 180 DDEIEKRMKFLTCDIMEVKEKL-GEYDCIILAALA---GN-EEEK------------------AKILGHIRKYMKEGGVL 236 (535)
Q Consensus 180 lG~Ls~rI~Fi~GDA~el~~dL-~~FDvVfiaALV---gm-~edK------------------~~VL~eL~rvLKPGGvL 236 (535)
+| + .+|.+.+.|+..+.... ..||.|++|+-= || ..+. .++|.+..+.|||||+|
T Consensus 161 ~G-~-~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~L 238 (470)
T PRK11933 161 CG-V-SNVALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTL 238 (470)
T ss_pred cC-C-CeEEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence 99 5 67899999987654333 359999998653 44 2221 67899999999999999
Q ss_pred EEEc
Q 041205 237 LVRS 240 (535)
Q Consensus 237 VvRs 240 (535)
|+-+
T Consensus 239 VYST 242 (470)
T PRK11933 239 VYST 242 (470)
T ss_pred EEEC
Confidence 8865
No 148
>PLN02672 methionine S-methyltransferase
Probab=98.61 E-value=2.4e-07 Score=108.61 Aligned_cols=108 Identities=20% Similarity=0.210 Sum_probs=82.2
Q ss_pred CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC--------------cCCCeEEEEcccccc
Q 041205 132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE--------------IEKRMKFLTCDIMEV 197 (535)
Q Consensus 132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~--------------Ls~rI~Fi~GDA~el 197 (535)
+.+|||||||+ |.-++.+|+ ..++++|+|+|+|+++++.|+++++..+. +.++++|+++|..+.
T Consensus 119 ~~~VLDlG~GS-G~Iai~La~-~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~ 196 (1082)
T PLN02672 119 DKTVAELGCGN-GWISIAIAE-KWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY 196 (1082)
T ss_pred CCEEEEEecch-HHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh
Confidence 56999999995 788888888 36778999999999999999999987540 225899999998765
Q ss_pred ccCCC-CcceEEeccc--------------------------------cC----C--hhhHHHHHHHHHhhcccCeEEEE
Q 041205 198 KEKLG-EYDCIILAAL--------------------------------AG----N--EEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 198 ~~dL~-~FDvVfiaAL--------------------------------Vg----m--~edK~~VL~eL~rvLKPGGvLVv 238 (535)
..+.+ .||+|+..-- .| - ..-+.+++.+..++|+|||.+++
T Consensus 197 ~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 197 CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 43322 5888874211 00 0 23357889999999999999998
Q ss_pred Ecc
Q 041205 239 RSA 241 (535)
Q Consensus 239 Rsa 241 (535)
--+
T Consensus 277 EiG 279 (1082)
T PLN02672 277 NMG 279 (1082)
T ss_pred EEC
Confidence 654
No 149
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.60 E-value=5.1e-07 Score=86.43 Aligned_cols=108 Identities=13% Similarity=-0.002 Sum_probs=80.2
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC---C-Ccc
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL---G-EYD 205 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL---~-~FD 205 (535)
..+.+|||++||++.++ +-++.+ ...+|++||+|+.+++.++++++..| +.++++++++|+.+....+ . .||
T Consensus 48 ~~g~~vLDLfaGsG~lg-lea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~-~~~~~~~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLG-EEALSR--GAKVAFLEEDDRKANQTLKENLALLK-SGEQAEVVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred cCCCEEEEecCCCcHHH-HHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhC-CcccEEEEehhHHHHHHHhhccCCCce
Confidence 45899999999975444 555552 22489999999999999999999999 7778999999997654322 2 389
Q ss_pred eEEeccccCChhhHHHHHHHHHh--hcccCeEEEEEccc
Q 041205 206 CIILAALAGNEEEKAKILGHIRK--YMKEGGVLLVRSAK 242 (535)
Q Consensus 206 vVfiaALVgm~edK~~VL~eL~r--vLKPGGvLVvRsa~ 242 (535)
+||++--.+. .....++..+.. .+++||++++....
T Consensus 124 vv~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 124 VIYLDPPFFN-GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred EEEECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 9999855432 234555665544 68999999997643
No 150
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.58 E-value=3.3e-07 Score=88.34 Aligned_cols=107 Identities=21% Similarity=0.233 Sum_probs=81.9
Q ss_pred CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc---CCCCcceEE
Q 041205 132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE---KLGEYDCII 208 (535)
Q Consensus 132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~---dL~~FDvVf 208 (535)
..-++||||| .|-..+-+|. ..|+..++|||+....+..|.+.+.+.| + .++.|+++||..+.. +.+.+|-|+
T Consensus 18 ~~l~lEIG~G-~G~~l~~~A~-~~Pd~n~iGiE~~~~~v~~a~~~~~~~~-l-~Nv~~~~~da~~~l~~~~~~~~v~~i~ 93 (195)
T PF02390_consen 18 NPLILEIGCG-KGEFLIELAK-RNPDINFIGIEIRKKRVAKALRKAEKRG-L-KNVRFLRGDARELLRRLFPPGSVDRIY 93 (195)
T ss_dssp CEEEEEET-T-TSHHHHHHHH-HSTTSEEEEEES-HHHHHHHHHHHHHHT-T-SSEEEEES-CTTHHHHHSTTTSEEEEE
T ss_pred CCeEEEecCC-CCHHHHHHHH-HCCCCCEEEEecchHHHHHHHHHHHhhc-c-cceEEEEccHHHHHhhcccCCchheEE
Confidence 3489999999 5777788888 4789999999999999999999999999 4 899999999987443 335799999
Q ss_pred eccccCC---hhh-----HHHHHHHHHhhcccCeEEEEEccc
Q 041205 209 LAALAGN---EEE-----KAKILGHIRKYMKEGGVLLVRSAK 242 (535)
Q Consensus 209 iaALVgm---~ed-----K~~VL~eL~rvLKPGGvLVvRsa~ 242 (535)
+..--.+ ... -..++..++++|+|||.|-+.+-+
T Consensus 94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~ 135 (195)
T PF02390_consen 94 INFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV 135 (195)
T ss_dssp EES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred EeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence 8644332 111 257899999999999999998853
No 151
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.53 E-value=4.7e-07 Score=88.28 Aligned_cols=111 Identities=20% Similarity=0.275 Sum_probs=81.1
Q ss_pred HHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc
Q 041205 117 KLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME 196 (535)
Q Consensus 117 rlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e 196 (535)
..|...+... +.+++.|+|.-|| +|+=++.+|+ +..+..|+++|++|.+++..+++++.-+ +.++|..+++|+.+
T Consensus 89 ~~Er~Ri~~~--v~~~e~VlD~faG-IG~f~l~~ak-~~~~~~V~A~d~Np~a~~~L~~Ni~lNk-v~~~i~~~~~D~~~ 163 (200)
T PF02475_consen 89 STERRRIANL--VKPGEVVLDMFAG-IGPFSLPIAK-HGKAKRVYAVDLNPDAVEYLKENIRLNK-VENRIEVINGDARE 163 (200)
T ss_dssp HHHHHHHHTC----TT-EEEETT-T-TTTTHHHHHH-HT-SSEEEEEES-HHHHHHHHHHHHHTT--TTTEEEEES-GGG
T ss_pred HHHHHHHHhc--CCcceEEEEccCC-ccHHHHHHhh-hcCccEEEEecCCHHHHHHHHHHHHHcC-CCCeEEEEcCCHHH
Confidence 4676666553 4689999999999 5666677887 5678899999999999999999999999 88999999999998
Q ss_pred cccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEE
Q 041205 197 VKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLL 237 (535)
Q Consensus 197 l~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLV 237 (535)
+.. ...||.|++.-.. .-..+|....+.+++||++-
T Consensus 164 ~~~-~~~~drvim~lp~----~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 164 FLP-EGKFDRVIMNLPE----SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ----TT-EEEEEE--TS----SGGGGHHHHHHHEEEEEEEE
T ss_pred hcC-ccccCEEEECChH----HHHHHHHHHHHHhcCCcEEE
Confidence 776 4679999995332 33478999999999999875
No 152
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.52 E-value=1.4e-06 Score=89.76 Aligned_cols=160 Identities=15% Similarity=0.140 Sum_probs=110.4
Q ss_pred HHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCC--cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEE
Q 041205 113 VKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKS--THFDNIDIDETANNLARRIVSSDDEIEKRMKFL 190 (535)
Q Consensus 113 v~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~G--a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi 190 (535)
..+++.....+.. -..+-||+||.||++-|--=.+.. .|. .+|.-.|.++..++.++++++..| +++-++|.
T Consensus 120 ~~~i~~ai~~L~~---~g~pvrIlDIAaG~GRYvlDal~~--~~~~~~~i~LrDys~~Nv~~g~~li~~~g-L~~i~~f~ 193 (311)
T PF12147_consen 120 EELIRQAIARLRE---QGRPVRILDIAAGHGRYVLDALEK--HPERPDSILLRDYSPINVEKGRALIAERG-LEDIARFE 193 (311)
T ss_pred HHHHHHHHHHHHh---cCCceEEEEeccCCcHHHHHHHHh--CCCCCceEEEEeCCHHHHHHHHHHHHHcC-CccceEEE
Confidence 3344444444432 257899999999987664434444 344 789999999999999999999999 77777999
Q ss_pred Eccccccc--cCCC-CcceEEeccccCChhh---HHHHHHHHHhhcccCeEEEEEc--cccc-----ccc---cC--CCC
Q 041205 191 TCDIMEVK--EKLG-EYDCIILAALAGNEEE---KAKILGHIRKYMKEGGVLLVRS--AKGA-----RAF---LY--PVV 252 (535)
Q Consensus 191 ~GDA~el~--~dL~-~FDvVfiaALVgm~ed---K~~VL~eL~rvLKPGGvLVvRs--a~Gl-----R~f---LY--P~V 252 (535)
++|+.+.. ..+. ..|++++..+....++ -.+-+..+.+.+.|||.+|+-. .|.- |.+ -. |-|
T Consensus 194 ~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~Wv 273 (311)
T PF12147_consen 194 QGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWV 273 (311)
T ss_pred ecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceE
Confidence 99998642 2223 3799999988766333 3456889999999999999976 2321 111 01 101
Q ss_pred ---------cc--ccCCcEEEE-EEcCCCcceeeeEEEec
Q 041205 253 ---------EH--ELFDFKVLS-IFHPTNDVINSVVLLQL 280 (535)
Q Consensus 253 ---------dp--dl~GFeil~-v~hP~~eVINSVVvARK 280 (535)
|. +.+||+... ++++.+ |+||-+|+|
T Consensus 274 MRrRsq~EmD~Lv~~aGF~K~~q~ID~~G--IFTVSlA~r 311 (311)
T PF12147_consen 274 MRRRSQAEMDQLVEAAGFEKIDQRIDEWG--IFTVSLARR 311 (311)
T ss_pred EEecCHHHHHHHHHHcCCchhhheeccCC--ceEEEeecC
Confidence 10 237998765 666665 588988876
No 153
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.52 E-value=3.6e-07 Score=94.84 Aligned_cols=77 Identities=19% Similarity=0.207 Sum_probs=61.4
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc-CCcCCCeEEEE-cccccccc----CCCCc
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD-DEIEKRMKFLT-CDIMEVKE----KLGEY 204 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l-G~Ls~rI~Fi~-GDA~el~~----dL~~F 204 (535)
.+.+|||||||++++..++.++ .++++|+|+|+|+.+++.|+++++.. + +.++|+++. .|..++.. ..+.|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~--~~~~~~~atDId~~Al~~A~~Nv~~Np~-l~~~I~~~~~~~~~~i~~~i~~~~~~f 190 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVH--EYGWRFVGSDIDPQALASAQAIISANPG-LNGAIRLRLQKDSKAIFKGIIHKNERF 190 (321)
T ss_pred CCceEEEecCCccHHHHHHHhh--CCCCEEEEEeCCHHHHHHHHHHHHhccC-CcCcEEEEEccchhhhhhcccccCCce
Confidence 5689999999987777766655 46899999999999999999999998 7 788999964 44433332 23469
Q ss_pred ceEEec
Q 041205 205 DCIILA 210 (535)
Q Consensus 205 DvVfia 210 (535)
|+|+..
T Consensus 191 DlivcN 196 (321)
T PRK11727 191 DATLCN 196 (321)
T ss_pred EEEEeC
Confidence 999976
No 154
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.49 E-value=8e-07 Score=95.85 Aligned_cols=131 Identities=18% Similarity=0.287 Sum_probs=87.3
Q ss_pred cchhhHHhHHHHHHHHHHhhC-CCCCCEEEEEccCCChhhHHHHHh--hcCCCcEEEEEeCChhHHHHHHHHHhhcCCcC
Q 041205 108 YYENYVKLAKLEYGALIENTG-VAQLKKVAFVGSGPMPLTSIILAS--QHMKSTHFDNIDIDETANNLARRIVSSDDEIE 184 (535)
Q Consensus 108 Yy~NYv~LirlE~~lL~~~~~-l~~pkRVLeIGSGplPlTAI~LAk--~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls 184 (535)
.|+.|++.|..=+.....-.. ..++..|++||||.+|++...+.. ++....+|.+||.++.|+...++.++..| ++
T Consensus 162 KY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~-w~ 240 (448)
T PF05185_consen 162 KYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG-WG 240 (448)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT-TT
T ss_pred HHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC-CC
Confidence 456677766332222211000 013578999999999998655521 11234699999999999999888888888 88
Q ss_pred CCeEEEEccccccccCCCCcceEEeccc--cCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 185 KRMKFLTCDIMEVKEKLGEYDCIILAAL--AGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 185 ~rI~Fi~GDA~el~~dL~~FDvVfiaAL--Vgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
++|+++.+|+.++..+ ..+|+|+..-+ .|.-+--.++|....|.|||||+++=..
T Consensus 241 ~~V~vi~~d~r~v~lp-ekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP~~ 297 (448)
T PF05185_consen 241 DKVTVIHGDMREVELP-EKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIPSS 297 (448)
T ss_dssp TTEEEEES-TTTSCHS-S-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEESSE
T ss_pred CeEEEEeCcccCCCCC-CceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeCcc
Confidence 9999999999887654 37999996522 2223455678999999999999886433
No 155
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.48 E-value=9.9e-07 Score=87.59 Aligned_cols=106 Identities=23% Similarity=0.259 Sum_probs=88.4
Q ss_pred CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC---CCcceEE
Q 041205 132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL---GEYDCII 208 (535)
Q Consensus 132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL---~~FDvVf 208 (535)
..-++||||| .|-..+-+|+ ..|...++|||+....+..|-+.+.+.| + +++.++++||.+++..+ +..|-|+
T Consensus 49 ~pi~lEIGfG-~G~~l~~~A~-~nP~~nfiGiEi~~~~v~~~l~k~~~~~-l-~Nlri~~~DA~~~l~~~~~~~sl~~I~ 124 (227)
T COG0220 49 APIVLEIGFG-MGEFLVEMAK-KNPEKNFLGIEIRVPGVAKALKKIKELG-L-KNLRLLCGDAVEVLDYLIPDGSLDKIY 124 (227)
T ss_pred CcEEEEECCC-CCHHHHHHHH-HCCCCCEEEEEEehHHHHHHHHHHHHcC-C-CcEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence 3689999999 6888889999 5889999999999999999999999999 5 49999999998876533 4689999
Q ss_pred eccccCC---hhh-----HHHHHHHHHhhcccCeEEEEEcc
Q 041205 209 LAALAGN---EEE-----KAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 209 iaALVgm---~ed-----K~~VL~eL~rvLKPGGvLVvRsa 241 (535)
+..--.+ ... ...+++.+.++|+|||.|-+.+-
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 8655444 112 35678999999999999999874
No 156
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.47 E-value=3.2e-07 Score=87.13 Aligned_cols=74 Identities=20% Similarity=0.279 Sum_probs=57.4
Q ss_pred CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCC--C-cceEEe
Q 041205 133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLG--E-YDCIIL 209 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~--~-FDvVfi 209 (535)
+.|+|+-|| .|.-+|.+|+ ...+|++||+|+..++.|+.+++-.| +.++|+|++||..++..... . ||+||+
T Consensus 1 ~~vlD~fcG-~GGNtIqFA~---~~~~Viaidid~~~~~~a~hNa~vYG-v~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 1 TTVLDAFCG-VGGNTIQFAR---TFDRVIAIDIDPERLECAKHNAEVYG-VADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp SEEEETT-T-TSHHHHHHHH---TT-EEEEEES-HHHHHHHHHHHHHTT--GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred CEEEEeccC-cCHHHHHHHH---hCCeEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 369999999 5778899999 46799999999999999999999999 88999999999998765443 2 899998
Q ss_pred cc
Q 041205 210 AA 211 (535)
Q Consensus 210 aA 211 (535)
+-
T Consensus 76 SP 77 (163)
T PF09445_consen 76 SP 77 (163)
T ss_dssp --
T ss_pred CC
Confidence 74
No 157
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=2.5e-06 Score=83.29 Aligned_cols=79 Identities=24% Similarity=0.360 Sum_probs=61.9
Q ss_pred CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205 128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI 207 (535)
Q Consensus 128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV 207 (535)
+.-.++.|+|+|||+ |.=++-.+- +...+|+|||+|+++++.+++++.+++ .++.|+++|+.+.. ..||.|
T Consensus 42 g~l~g~~V~DlG~GT-G~La~ga~~--lGa~~V~~vdiD~~a~ei~r~N~~~l~---g~v~f~~~dv~~~~---~~~dtv 112 (198)
T COG2263 42 GDLEGKTVLDLGAGT-GILAIGAAL--LGASRVLAVDIDPEALEIARANAEELL---GDVEFVVADVSDFR---GKFDTV 112 (198)
T ss_pred CCcCCCEEEEcCCCc-CHHHHHHHh--cCCcEEEEEecCHHHHHHHHHHHHhhC---CceEEEEcchhhcC---CccceE
Confidence 446789999999996 555554433 444789999999999999999999955 68999999997543 568988
Q ss_pred EeccccCC
Q 041205 208 ILAALAGN 215 (535)
Q Consensus 208 fiaALVgm 215 (535)
++.--.|.
T Consensus 113 imNPPFG~ 120 (198)
T COG2263 113 IMNPPFGS 120 (198)
T ss_pred EECCCCcc
Confidence 88755553
No 158
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.41 E-value=2.3e-06 Score=84.10 Aligned_cols=117 Identities=14% Similarity=0.164 Sum_probs=87.2
Q ss_pred HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205 121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK 200 (535)
Q Consensus 121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d 200 (535)
+.|..++. ..+.+|||||||+ |-=+.++|+ ++|..+...-|.|+....--+..+...| +.+--.=+.-|+.+-.-+
T Consensus 16 ~vL~~~l~-~~~~~vLEiaSGt-GqHa~~FA~-~lP~l~WqPSD~~~~~~~sI~a~~~~~~-~~Nv~~P~~lDv~~~~w~ 91 (204)
T PF06080_consen 16 EVLKQYLP-DSGTRVLEIASGT-GQHAVYFAQ-ALPHLTWQPSDPDDNLRPSIRAWIAEAG-LPNVRPPLALDVSAPPWP 91 (204)
T ss_pred HHHHHHhC-ccCceEEEEcCCc-cHHHHHHHH-HCCCCEEcCCCCChHHHhhHHHHHHhcC-CcccCCCeEeecCCCCCc
Confidence 34444443 3333699999995 899999999 6999999999999999766666677767 432222334455433222
Q ss_pred C--------CCcceEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 201 L--------GEYDCIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 201 L--------~~FDvVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
. ..||.||...++|. -+.-+.+|+.+.++|+|||+|++..+
T Consensus 92 ~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 92 WELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred cccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 2 36999999999985 78889999999999999999999764
No 159
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.40 E-value=1e-06 Score=87.06 Aligned_cols=99 Identities=19% Similarity=0.231 Sum_probs=85.6
Q ss_pred CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205 132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA 211 (535)
Q Consensus 132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA 211 (535)
+++++|||||+ |++++-||= ..|+.+||=+|-....+..=+.+...+| + ++++++++.+.+.......||+|..-|
T Consensus 68 ~~~~~DIGSGa-GfPGipLAI-~~p~~~vtLles~~Kk~~FL~~~~~eL~-L-~nv~i~~~RaE~~~~~~~~~D~vtsRA 143 (215)
T COG0357 68 AKRVLDIGSGA-GFPGIPLAI-AFPDLKVTLLESLGKKIAFLREVKKELG-L-ENVEIVHGRAEEFGQEKKQYDVVTSRA 143 (215)
T ss_pred CCEEEEeCCCC-CCchhhHHH-hccCCcEEEEccCchHHHHHHHHHHHhC-C-CCeEEehhhHhhcccccccCcEEEeeh
Confidence 79999999995 999999985 5789999999999999999999999999 4 789999999987664332299999987
Q ss_pred ccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205 212 LAGNEEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 212 LVgm~edK~~VL~eL~rvLKPGGvLVv 238 (535)
.. .-..+++-+...+++||.++.
T Consensus 144 va----~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 144 VA----SLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred cc----chHHHHHHHHHhcccCCcchh
Confidence 76 567888889999999887654
No 160
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.39 E-value=2e-06 Score=81.05 Aligned_cols=108 Identities=19% Similarity=0.241 Sum_probs=71.6
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcC-CcCCCeEEEEccccccc----cCCCCc
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDD-EIEKRMKFLTCDIMEVK----EKLGEY 204 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG-~Ls~rI~Fi~GDA~el~----~dL~~F 204 (535)
.++.+|||+||| .|+++|.+|. +..+++|+..|.++ .++..+.+++.-+ ....++++..-|-.+.. .....|
T Consensus 44 ~~~~~VLELGaG-~Gl~gi~~a~-~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 44 FRGKRVLELGAG-TGLPGIAAAK-LFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp TTTSEEEETT-T-TSHHHHHHHH-T-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred cCCceEEEECCc-cchhHHHHHh-ccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 578999999999 6999999999 34678999999999 9999999998754 12467888877653311 122469
Q ss_pred ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
|+|+.+-.+-..+....++.-+.+.++|+|.+++-.
T Consensus 121 D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 121 DVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp SEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred CEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 999976444336778899999999999998766643
No 161
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.38 E-value=1.2e-06 Score=85.49 Aligned_cols=99 Identities=13% Similarity=0.132 Sum_probs=70.5
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc--cCCCCcce
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK--EKLGEYDC 206 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~--~dL~~FDv 206 (535)
+.+++||||+|||-+-+-+.+. + ..+++..|||+|++.+..+.+ -| +.++++|+.+-+ ++++.||+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~-~--~k~v~g~GvEid~~~v~~cv~----rG-----v~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLK-D--EKQVDGYGVEIDPDNVAACVA----RG-----VSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHH-H--hcCCeEEEEecCHHHHHHHHH----cC-----CCEEECCHHHhHhhCCCCCccE
Confidence 4689999999999754333322 2 379999999999998754432 24 678999997644 35567999
Q ss_pred EEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
|++.-.+........+|+++.|+=+ -+++.+-+
T Consensus 79 VIlsqtLQ~~~~P~~vL~EmlRVgr-~~IVsFPN 111 (193)
T PF07021_consen 79 VILSQTLQAVRRPDEVLEEMLRVGR-RAIVSFPN 111 (193)
T ss_pred EehHhHHHhHhHHHHHHHHHHHhcC-eEEEEecC
Confidence 9988666445778899999987633 34444444
No 162
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.37 E-value=1.7e-06 Score=90.40 Aligned_cols=95 Identities=12% Similarity=0.151 Sum_probs=68.8
Q ss_pred CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC----------
Q 041205 132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL---------- 201 (535)
Q Consensus 132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL---------- 201 (535)
+.+|||++||.+ .-++.+|+. ..+|+|||+++.+++.|+++++..| + ++++|+++|+.+....+
T Consensus 207 ~~~vLDl~~G~G-~~sl~la~~---~~~v~~vE~~~~ai~~a~~N~~~~~-~-~~v~~~~~d~~~~l~~~~~~~~~~~~~ 280 (362)
T PRK05031 207 KGDLLELYCGNG-NFTLALARN---FRRVLATEISKPSVAAAQYNIAANG-I-DNVQIIRMSAEEFTQAMNGVREFNRLK 280 (362)
T ss_pred CCeEEEEecccc-HHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHHhC-C-CcEEEEECCHHHHHHHHhhcccccccc
Confidence 368999999964 445688882 3589999999999999999999989 5 58999999998754321
Q ss_pred ------CCcceEEecccc-CChhhHHHHHHHHHhhcccCeEEEE
Q 041205 202 ------GEYDCIILAALA-GNEEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 202 ------~~FDvVfiaALV-gm~edK~~VL~eL~rvLKPGGvLVv 238 (535)
..||+||+|--- | -..++++.+.+ |++++.+
T Consensus 281 ~~~~~~~~~D~v~lDPPR~G---~~~~~l~~l~~---~~~ivyv 318 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPPRAG---LDDETLKLVQA---YERILYI 318 (362)
T ss_pred cccccCCCCCEEEECCCCCC---CcHHHHHHHHc---cCCEEEE
Confidence 148999998322 2 23445555543 5554433
No 163
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.37 E-value=1.9e-06 Score=89.94 Aligned_cols=95 Identities=14% Similarity=0.158 Sum_probs=69.3
Q ss_pred CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC------C---C
Q 041205 132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK------L---G 202 (535)
Q Consensus 132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d------L---~ 202 (535)
+.+|||+|||+ |.-++.+|+. ..+|+|||+++++++.|+++++..| + ++++|+++|+.++... + .
T Consensus 198 ~~~vlDl~~G~-G~~sl~la~~---~~~v~~vE~~~~av~~a~~n~~~~~-~-~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 198 KGDLLELYCGN-GNFSLALAQN---FRRVLATEIAKPSVNAAQYNIAANN-I-DNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CCcEEEEeccc-cHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEEcCHHHHHHHHhhcccccccc
Confidence 35799999996 5666788883 2589999999999999999999998 5 5799999999875432 1 1
Q ss_pred -------CcceEEeccc-cCChhhHHHHHHHHHhhcccCeEEEE
Q 041205 203 -------EYDCIILAAL-AGNEEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 203 -------~FDvVfiaAL-Vgm~edK~~VL~eL~rvLKPGGvLVv 238 (535)
.||+||+|-- .|+ ...+++.+.+ |++++.+
T Consensus 272 ~~~~~~~~~d~v~lDPPR~G~---~~~~l~~l~~---~~~ivYv 309 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPPRAGL---DPDTCKLVQA---YERILYI 309 (353)
T ss_pred ccccccCCCCEEEECCCCCCC---cHHHHHHHHc---CCcEEEE
Confidence 3899999832 232 3455555543 5554444
No 164
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.36 E-value=2.1e-06 Score=90.89 Aligned_cols=101 Identities=19% Similarity=0.233 Sum_probs=80.2
Q ss_pred CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205 132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA 211 (535)
Q Consensus 132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA 211 (535)
+.+|||++||. |.=++.+|.. ....+|+++|+|+++++.++++++..| + +++++.++|+.++......||+|+++-
T Consensus 58 ~~~vLDl~aGs-G~~~l~~a~~-~~~~~V~a~Din~~Av~~a~~N~~~N~-~-~~~~v~~~Da~~~l~~~~~fD~V~lDP 133 (382)
T PRK04338 58 RESVLDALSAS-GIRGIRYALE-TGVEKVTLNDINPDAVELIKKNLELNG-L-ENEKVFNKDANALLHEERKFDVVDIDP 133 (382)
T ss_pred CCEEEECCCcc-cHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CceEEEhhhHHHHHhhcCCCCEEEECC
Confidence 46999999996 5556777663 334589999999999999999999888 5 467899999977554234699999985
Q ss_pred ccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 212 LAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 212 LVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
. |. ...+++...+.+++||+|.+-.
T Consensus 134 ~-Gs---~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 134 F-GS---PAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred C-CC---cHHHHHHHHHHhcCCCEEEEEe
Confidence 4 53 4678888777899999998864
No 165
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.36 E-value=2e-06 Score=88.07 Aligned_cols=77 Identities=14% Similarity=0.244 Sum_probs=62.2
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC 206 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv 206 (535)
..+.++++|+|||||++.+|. .+++ .+.+|++||+|+.+++.+++.+...| ...+++++++|+.+. ++..||+
T Consensus 32 ~~~~~~~~VLEIG~G~G~LT~-~Ll~---~~~~V~avEiD~~li~~l~~~~~~~~-~~~~v~ii~~Dal~~--~~~~~d~ 104 (294)
T PTZ00338 32 AAIKPTDTVLEIGPGTGNLTE-KLLQ---LAKKVIAIEIDPRMVAELKKRFQNSP-LASKLEVIEGDALKT--EFPYFDV 104 (294)
T ss_pred cCCCCcCEEEEecCchHHHHH-HHHH---hCCcEEEEECCHHHHHHHHHHHHhcC-CCCcEEEEECCHhhh--cccccCE
Confidence 445788999999999866665 4555 35789999999999999999988777 457899999999764 3457998
Q ss_pred EEec
Q 041205 207 IILA 210 (535)
Q Consensus 207 Vfia 210 (535)
|+..
T Consensus 105 VvaN 108 (294)
T PTZ00338 105 CVAN 108 (294)
T ss_pred EEec
Confidence 8864
No 166
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.35 E-value=1.1e-06 Score=92.61 Aligned_cols=159 Identities=15% Similarity=0.188 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHhHhhhhHHHhHhhccCCCccccccCccchhhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHH
Q 041205 70 MRQSLIILCARAESLLELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSII 149 (535)
Q Consensus 70 l~~~Lr~lca~AE~~LE~h~A~~Lls~~~pl~~L~~FpYy~NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~ 149 (535)
+.+.+-.++.......|..|...+..++-+ .+-.++...++.|--.+.+ .++.++.+++++||| +|-.+..
T Consensus 57 ~~e~~~~~y~~~~dl~~~~w~~~~h~~~~~-------e~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~g-~~~~~~~ 127 (364)
T KOG1269|consen 57 LPEQIAKYYNNSTDLYERNWGQSFHFGRIP-------EGNSNEMFWIRHEGIVALR-ESCFPGSKVLDVGTG-VGGPSRY 127 (364)
T ss_pred cchHHHHHhcccchhhhhhhccchhccCcc-------chhHHHHHHHhhcchHHHh-hcCcccccccccCcC-cCchhHH
Confidence 345556666666788888888877666532 3334444444444333222 244678899999999 7888888
Q ss_pred HHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec-cccCChhhHHHHHHHHHh
Q 041205 150 LASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA-ALAGNEEEKAKILGHIRK 228 (535)
Q Consensus 150 LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia-ALVgm~edK~~VL~eL~r 228 (535)
++. +.++.++|+|.++.-+.++.......+ +.+.-.|+.+|....+++.+.||.|++- +..| .++...++.++++
T Consensus 128 i~~--f~~~~~~Gl~~n~~e~~~~~~~~~~~~-l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~-~~~~~~~y~Ei~r 203 (364)
T KOG1269|consen 128 IAV--FKKAGVVGLDNNAYEAFRANELAKKAY-LDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCH-APDLEKVYAEIYR 203 (364)
T ss_pred HHH--hccCCccCCCcCHHHHHHHHHHHHHHH-hhhhcceehhhhhcCCCCccccCcEEEEeeccc-CCcHHHHHHHHhc
Confidence 877 678999999999999999999988888 7888888999999989998999999953 3333 5899999999999
Q ss_pred hcccCeEEEEEcc
Q 041205 229 YMKEGGVLLVRSA 241 (535)
Q Consensus 229 vLKPGGvLVvRsa 241 (535)
+++|||++++...
T Consensus 204 v~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 204 VLKPGGLFIVKEW 216 (364)
T ss_pred ccCCCceEEeHHH
Confidence 9999999999664
No 167
>PHA03411 putative methyltransferase; Provisional
Probab=98.35 E-value=1.9e-06 Score=88.13 Aligned_cols=100 Identities=13% Similarity=0.248 Sum_probs=70.9
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
..+.+|||+|||++.++ +.++. ..++.+|+++|+|+++++.|++++ .+++|+++|+.+... ...||+|+.
T Consensus 63 ~~~grVLDLGcGsGils-l~la~-r~~~~~V~gVDisp~al~~Ar~n~-------~~v~~v~~D~~e~~~-~~kFDlIIs 132 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLS-FCMLH-RCKPEKIVCVELNPEFARIGKRLL-------PEAEWITSDVFEFES-NEKFDVVIS 132 (279)
T ss_pred ccCCeEEEcCCCCCHHH-HHHHH-hCCCCEEEEEECCHHHHHHHHHhC-------cCCEEEECchhhhcc-cCCCcEEEE
Confidence 34679999999975454 44445 245789999999999999999863 257899999987643 256999998
Q ss_pred ccccCC--hhhH------------------HHHHHHHHhhcccCeEEEEE
Q 041205 210 AALAGN--EEEK------------------AKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 210 aALVgm--~edK------------------~~VL~eL~rvLKPGGvLVvR 239 (535)
.--.+. ..+. .+++..+..+|+|+|.+.+.
T Consensus 133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred cCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 544321 1111 34566667888888866665
No 168
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.34 E-value=6.3e-07 Score=90.20 Aligned_cols=133 Identities=23% Similarity=0.301 Sum_probs=94.4
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC--CCcc
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL--GEYD 205 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL--~~FD 205 (535)
.+.+.+|||.=+| +|||||.-++ .|+ +|.+|+.||..+++|.-+==.-++.+.+|+++.||+.++..++ .+||
T Consensus 132 ~~~G~rVLDtC~G-LGYtAi~a~~---rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 132 VKRGERVLDTCTG-LGYTAIEALE---RGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred cccCCEeeeeccC-ccHHHHHHHH---cCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccc
Confidence 4679999999888 9999999988 688 9999999999999998662222334457999999999876654 4599
Q ss_pred eEEec----cccCChhhHHHHHHHHHhhcccCeEEEEEccccc---ccccCC-CCcc--ccCCcEEEEEEc
Q 041205 206 CIILA----ALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGA---RAFLYP-VVEH--ELFDFKVLSIFH 266 (535)
Q Consensus 206 vVfia----ALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~Gl---R~fLYP-~Vdp--dl~GFeil~v~h 266 (535)
+|+-| ++.| .---.+++++++|+|+|||.+.=..+... |...-| -|.. ...||+++....
T Consensus 208 aIiHDPPRfS~Ag-eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 208 AIIHDPPRFSLAG-ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred eEeeCCCccchhh-hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeeh
Confidence 99976 2333 12357899999999999998854332221 111111 1221 237999866544
No 169
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.34 E-value=9e-07 Score=89.13 Aligned_cols=117 Identities=12% Similarity=0.112 Sum_probs=83.6
Q ss_pred CCCC-EEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205 130 AQLK-KVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII 208 (535)
Q Consensus 130 ~~pk-RVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf 208 (535)
+.+. -++|||||+ |.|++.+|. |+ -+|+++|++++|+++|++.....- .....++...+..++....++.|+|.
T Consensus 31 ~~~h~~a~DvG~G~-Gqa~~~iae-~~--k~VIatD~s~~mL~~a~k~~~~~y-~~t~~~ms~~~~v~L~g~e~SVDlI~ 105 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGN-GQAARGIAE-HY--KEVIATDVSEAMLKVAKKHPPVTY-CHTPSTMSSDEMVDLLGGEESVDLIT 105 (261)
T ss_pred CCCcceEEEeccCC-CcchHHHHH-hh--hhheeecCCHHHHHHhhcCCCccc-ccCCccccccccccccCCCcceeeeh
Confidence 4443 899999997 599999999 45 589999999999999988755322 22344555555555555556799999
Q ss_pred eccccCChhhHHHHHHHHHhhcccCe-EEEEEcccccccccCCCCc
Q 041205 209 LAALAGNEEEKAKILGHIRKYMKEGG-VLLVRSAKGARAFLYPVVE 253 (535)
Q Consensus 209 iaALVgm~edK~~VL~eL~rvLKPGG-vLVvRsa~GlR~fLYP~Vd 253 (535)
.+-.+|+ =+-++++.++.|+||+.| ++++=...- -.+.+|.++
T Consensus 106 ~Aqa~HW-Fdle~fy~~~~rvLRk~Gg~iavW~Y~d-d~v~~pE~d 149 (261)
T KOG3010|consen 106 AAQAVHW-FDLERFYKEAYRVLRKDGGLIAVWNYND-DFVDWPEFD 149 (261)
T ss_pred hhhhHHh-hchHHHHHHHHHHcCCCCCEEEEEEccC-CCcCCHHHH
Confidence 9877776 567899999999999876 766633221 124555444
No 170
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.33 E-value=2.2e-06 Score=91.32 Aligned_cols=109 Identities=19% Similarity=0.213 Sum_probs=88.1
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC----CCc
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL----GEY 204 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL----~~F 204 (535)
..+++||++=|=++|+| +..|. .|+ +||+||+|..++++|+++++-.|.-.+++.|+++|+.++.... ..|
T Consensus 216 ~~GkrvLNlFsYTGgfS-v~Aa~---gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~f 291 (393)
T COG1092 216 AAGKRVLNLFSYTGGFS-VHAAL---GGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKF 291 (393)
T ss_pred ccCCeEEEecccCcHHH-HHHHh---cCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcc
Confidence 34999999999765555 55555 677 9999999999999999999998832478999999998876533 259
Q ss_pred ceEEecccc------C-C--hhhHHHHHHHHHhhcccCeEEEEEccc
Q 041205 205 DCIILAALA------G-N--EEEKAKILGHIRKYMKEGGVLLVRSAK 242 (535)
Q Consensus 205 DvVfiaALV------g-m--~edK~~VL~eL~rvLKPGGvLVvRsa~ 242 (535)
|+|++|--. + . ..++.+++..+.+.|+|||++++-+-.
T Consensus 292 DlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 292 DLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred cEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 999998321 1 1 578899999999999999999997743
No 171
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.33 E-value=2.5e-06 Score=84.85 Aligned_cols=74 Identities=19% Similarity=0.241 Sum_probs=58.2
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC 206 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv 206 (535)
+++.++++|||||||++.+| +.++++ +.+|++||+|+.+++.+++.+... .+++++++|+.++. +..||.
T Consensus 25 ~~~~~~~~VLEIG~G~G~lt-~~L~~~---~~~v~~vEid~~~~~~l~~~~~~~----~~v~ii~~D~~~~~--~~~~d~ 94 (258)
T PRK14896 25 AEDTDGDPVLEIGPGKGALT-DELAKR---AKKVYAIELDPRLAEFLRDDEIAA----GNVEIIEGDALKVD--LPEFNK 94 (258)
T ss_pred cCCCCcCeEEEEeCccCHHH-HHHHHh---CCEEEEEECCHHHHHHHHHHhccC----CCEEEEEeccccCC--chhceE
Confidence 34567899999999975555 566662 579999999999999999887552 48999999998754 346898
Q ss_pred EEec
Q 041205 207 IILA 210 (535)
Q Consensus 207 Vfia 210 (535)
|+..
T Consensus 95 Vv~N 98 (258)
T PRK14896 95 VVSN 98 (258)
T ss_pred EEEc
Confidence 8764
No 172
>PRK00536 speE spermidine synthase; Provisional
Probab=98.32 E-value=3.8e-06 Score=85.16 Aligned_cols=100 Identities=19% Similarity=0.208 Sum_probs=77.6
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc--CCcCCCeEEEEccccccccCCCCcceE
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD--DEIEKRMKFLTCDIMEVKEKLGEYDCI 207 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l--G~Ls~rI~Fi~GDA~el~~dL~~FDvV 207 (535)
..|+|||-||.|- |.|+.-+.+ | + .+|+-||||+++++.+++.+... +.-+.|++++.. ..+ ...+.||+|
T Consensus 71 ~~pk~VLIiGGGD-Gg~~REvLk-h-~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVI 143 (262)
T PRK00536 71 KELKEVLIVDGFD-LELAHQLFK-Y-D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLI 143 (262)
T ss_pred CCCCeEEEEcCCc-hHHHHHHHC-c-C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEE
Confidence 6789999999995 777777778 3 4 49999999999999999965542 211368888762 211 112469999
Q ss_pred EeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
++|++. ...+++.+.+.|+|||++++.+.
T Consensus 144 IvDs~~-----~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 144 ICLQEP-----DIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred EEcCCC-----ChHHHHHHHHhcCCCcEEEECCC
Confidence 999775 36888999999999999999765
No 173
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.32 E-value=3.1e-06 Score=86.73 Aligned_cols=111 Identities=15% Similarity=0.195 Sum_probs=82.9
Q ss_pred CCCEEEEEccCCC--hhhHHHHHhhcCC----CcEEEEEeCChhHHHHHHHHH------------------hh-----cC
Q 041205 131 QLKKVAFVGSGPM--PLTSIILASQHMK----STHFDNIDIDETANNLARRIV------------------SS-----DD 181 (535)
Q Consensus 131 ~pkRVLeIGSGpl--PlTAI~LAk~~l~----Ga~VtGIDIDpeAIelAR~li------------------~~-----lG 181 (535)
.+-||.-.||+++ |||--++.....+ +.+|+|+|||+.+++.|++-+ .+ .|
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 3579999999865 5775554443221 468999999999999999852 11 01
Q ss_pred ------CcCCCeEEEEccccccccC-CCCcceEEeccccC-C-hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 182 ------EIEKRMKFLTCDIMEVKEK-LGEYDCIILAALAG-N-EEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 182 ------~Ls~rI~Fi~GDA~el~~d-L~~FDvVfiaALVg-m-~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
.+.++|+|...|..+.+.+ .+.||+||+-+... . .+.+.++++.+++.|+|||+|++-..
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 0447899999999764332 46799999876553 3 68899999999999999999988554
No 174
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.30 E-value=2.6e-06 Score=86.22 Aligned_cols=108 Identities=16% Similarity=0.261 Sum_probs=77.3
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC---------------------------
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE--------------------------- 182 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~--------------------------- 182 (535)
-.+..+|||||.. |.-++.+|+ ++....|.|+|||+..|..||+.++.--+
T Consensus 57 f~~~~~LDIGCNs-G~lt~~iak-~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 57 FEPKQALDIGCNS-GFLTLSIAK-DFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cCcceeEeccCCc-chhHHHHHH-hhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 4578999999985 677788999 45556799999999999999998775321
Q ss_pred ------cCCCeEEEEcccc----ccc-cCCCCcceEEecccc---CC---hhhHHHHHHHHHhhcccCeEEEEE
Q 041205 183 ------IEKRMKFLTCDIM----EVK-EKLGEYDCIILAALA---GN---EEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 183 ------Ls~rI~Fi~GDA~----el~-~dL~~FDvVfiaALV---gm---~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
+.+++.|...+-. +++ .....||+|+.-+.- |+ -+.-.++|.++.++|.|||+||+-
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 1123333333321 111 122459999965542 32 578899999999999999999985
No 175
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.30 E-value=3.4e-06 Score=87.86 Aligned_cols=110 Identities=19% Similarity=0.190 Sum_probs=75.9
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC--------cCCCeEEEEccccccc----
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE--------IEKRMKFLTCDIMEVK---- 198 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~--------Ls~rI~Fi~GDA~el~---- 198 (535)
++.+|||+|||-+|=.-=|... .-..++|+||++++|+.|++..+.... ..-...|+++|.....
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~---~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~ 138 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA---KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREK 138 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT---T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCT
T ss_pred CCCeEEEecCCCchhHHHHHhc---CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhh
Confidence 7899999999987766555533 457999999999999999998832110 1124578899886321
Q ss_pred cCC--CCcceEEeccccCC---hhhHHH-HHHHHHhhcccCeEEEEEcccc
Q 041205 199 EKL--GEYDCIILAALAGN---EEEKAK-ILGHIRKYMKEGGVLLVRSAKG 243 (535)
Q Consensus 199 ~dL--~~FDvVfiaALVgm---~edK~~-VL~eL~rvLKPGGvLVvRsa~G 243 (535)
... ..||+|=+....|. -+++.+ +|..+...|+|||+++.-.+++
T Consensus 139 ~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 139 LPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp SSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred ccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 111 36999987655542 566666 9999999999999999877654
No 176
>PRK04148 hypothetical protein; Provisional
Probab=98.28 E-value=9.9e-06 Score=75.01 Aligned_cols=93 Identities=16% Similarity=0.213 Sum_probs=68.6
Q ss_pred CCCCEEEEEccCCChh-hHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-CCcceE
Q 041205 130 AQLKKVAFVGSGPMPL-TSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-GEYDCI 207 (535)
Q Consensus 130 ~~pkRVLeIGSGplPl-TAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-~~FDvV 207 (535)
.++++|++|||| .|+ .|..|++ .|..|+++|+|+++++.|++. + +.++++|..+-...+ .++|+|
T Consensus 15 ~~~~kileIG~G-fG~~vA~~L~~---~G~~ViaIDi~~~aV~~a~~~----~-----~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 15 GKNKKIVELGIG-FYFKVAKKLKE---SGFDVIVIDINEKAVEKAKKL----G-----LNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred ccCCEEEEEEec-CCHHHHHHHHH---CCCEEEEEECCHHHHHHHHHh----C-----CeEEECcCCCCCHHHHhcCCEE
Confidence 457899999999 565 7778877 689999999999999888665 4 478999997654443 579999
Q ss_pred EeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+.--.- ++-...+.++++.+ |+-++++.
T Consensus 82 ysirpp---~el~~~~~~la~~~--~~~~~i~~ 109 (134)
T PRK04148 82 YSIRPP---RDLQPFILELAKKI--NVPLIIKP 109 (134)
T ss_pred EEeCCC---HHHHHHHHHHHHHc--CCCEEEEc
Confidence 975333 56666666676643 55555554
No 177
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=3e-06 Score=84.09 Aligned_cols=104 Identities=17% Similarity=0.179 Sum_probs=79.9
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhc-CCCcEEEEEeCChhHHHHHHHHHhhcC--------CcCCCeEEEEcccccccc
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQH-MKSTHFDNIDIDETANNLARRIVSSDD--------EIEKRMKFLTCDIMEVKE 199 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~-l~Ga~VtGIDIDpeAIelAR~li~~lG--------~Ls~rI~Fi~GDA~el~~ 199 (535)
+.++-+.|+||||+ ||-+-|+|.-. .+|..++|||.-++.++.|++++.+.- .-..+..|+.||+...-.
T Consensus 80 L~pG~s~LdvGsGS-GYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~ 158 (237)
T KOG1661|consen 80 LQPGASFLDVGSGS-GYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA 158 (237)
T ss_pred hccCcceeecCCCc-cHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence 47899999999996 67667777522 356666999999999999999987643 012478999999987666
Q ss_pred CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205 200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
+...||.|++-|.+ .++.+.+...|+|||.+++-
T Consensus 159 e~a~YDaIhvGAaa------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 159 EQAPYDAIHVGAAA------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred ccCCcceEEEccCc------cccHHHHHHhhccCCeEEEe
Confidence 66789999997666 34455666688998887773
No 178
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.24 E-value=3.6e-06 Score=84.42 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=54.8
Q ss_pred hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcc
Q 041205 126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYD 205 (535)
Q Consensus 126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FD 205 (535)
.+.+.++++|||||||++.+| ..++++ +.+|+|+|+|+++++.+++.+.. .+++++++|+.++..+.-.+|
T Consensus 37 ~l~~~~~~~VLEiG~G~G~lt-~~L~~~---~~~v~avE~d~~~~~~~~~~~~~-----~~v~~i~~D~~~~~~~~~~~~ 107 (272)
T PRK00274 37 AAGPQPGDNVLEIGPGLGALT-EPLLER---AAKVTAVEIDRDLAPILAETFAE-----DNLTIIEGDALKVDLSELQPL 107 (272)
T ss_pred hcCCCCcCeEEEeCCCccHHH-HHHHHh---CCcEEEEECCHHHHHHHHHhhcc-----CceEEEEChhhcCCHHHcCcc
Confidence 345578899999999985555 566662 35999999999999999987632 479999999987643211135
Q ss_pred eEEe
Q 041205 206 CIIL 209 (535)
Q Consensus 206 vVfi 209 (535)
.|+.
T Consensus 108 ~vv~ 111 (272)
T PRK00274 108 KVVA 111 (272)
T ss_pred eEEE
Confidence 5554
No 179
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=9.9e-06 Score=83.10 Aligned_cols=112 Identities=16% Similarity=0.154 Sum_probs=92.2
Q ss_pred HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205 120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE 199 (535)
Q Consensus 120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~ 199 (535)
...+...+.+.|+.+|+|-|+|.+++| ..+|+...|-++++..|+.+.+.+.|++-+++.| +++++++.+-|+-...+
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlS-haiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg-i~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLS-HAIARAVAPTGHLYTFEFHETRAEKALEEFREHG-IGDNVTVTHRDVCGSGF 171 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHH-HHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC-CCcceEEEEeecccCCc
Confidence 455556667899999999999987666 5667766788999999999999999999999999 89999999999876555
Q ss_pred CC--CCcceEEeccccCChhhHHHHHHHHHhhcccCe-EEEE
Q 041205 200 KL--GEYDCIILAALAGNEEEKAKILGHIRKYMKEGG-VLLV 238 (535)
Q Consensus 200 dL--~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGG-vLVv 238 (535)
.. ..+|.||+|- +.+...+-++++++|.+| +|+.
T Consensus 172 ~~ks~~aDaVFLDl-----PaPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 172 LIKSLKADAVFLDL-----PAPWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred cccccccceEEEcC-----CChhhhhhhhHHHhhhcCceEEe
Confidence 55 3499999983 357788889999999877 4444
No 180
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.23 E-value=1.1e-05 Score=76.53 Aligned_cols=117 Identities=19% Similarity=0.208 Sum_probs=78.0
Q ss_pred HHhhCCCCCCEEEEEccCC--ChhhHHHHHhhcCC-----CcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc
Q 041205 124 IENTGVAQLKKVAFVGSGP--MPLTSIILASQHMK-----STHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME 196 (535)
Q Consensus 124 ~~~~~l~~pkRVLeIGSGp--lPlTAI~LAk~~l~-----Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e 196 (535)
.......++..|+|-=||+ +++-+..++....| ...+.|+|+|+++++.|+++++..| +...|.|.++|+.+
T Consensus 21 l~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag-~~~~i~~~~~D~~~ 99 (179)
T PF01170_consen 21 LNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG-VEDYIDFIQWDARE 99 (179)
T ss_dssp HHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT--CGGEEEEE--GGG
T ss_pred HHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc-cCCceEEEecchhh
Confidence 3344567889999866654 33334444441111 1239999999999999999999999 78899999999999
Q ss_pred cccCCCCcceEEeccccCC-h-------hhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 197 VKEKLGEYDCIILAALAGN-E-------EEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 197 l~~dL~~FDvVfiaALVgm-~-------edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
++...+.+|+|+.+--.|. . .-+..+++++.+++++..++++-..
T Consensus 100 l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~ 152 (179)
T PF01170_consen 100 LPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSN 152 (179)
T ss_dssp GGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESC
T ss_pred cccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 8855567999999876664 2 2345678888999999767766554
No 181
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.21 E-value=1.8e-05 Score=81.47 Aligned_cols=77 Identities=16% Similarity=0.270 Sum_probs=59.5
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEE----Eccccccc-cCCCCc
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFL----TCDIMEVK-EKLGEY 204 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi----~GDA~el~-~dL~~F 204 (535)
.++..|||+|||.+.+|.-+++. ++.++|++||.++.|+.+|.+++.+++ +.++|.++ ++|+.+-. ..++.+
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~--L~~~~v~AiD~S~~Ai~La~eN~qr~~-l~g~i~v~~~~me~d~~~~~~l~~~~~ 223 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHG--LPQCTVTAIDVSKAAIKLAKENAQRLK-LSGRIEVIHNIMESDASDEHPLLEGKI 223 (328)
T ss_pred cccceEEEecCCccHHHHHHHhc--CCCceEEEEeccHHHHHHHHHHHHHHh-hcCceEEEecccccccccccccccCce
Confidence 45679999999986666555544 789999999999999999999999999 78999988 55654322 122457
Q ss_pred ceEEe
Q 041205 205 DCIIL 209 (535)
Q Consensus 205 DvVfi 209 (535)
|+++.
T Consensus 224 dllvs 228 (328)
T KOG2904|consen 224 DLLVS 228 (328)
T ss_pred eEEec
Confidence 77654
No 182
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.20 E-value=1.6e-05 Score=78.65 Aligned_cols=69 Identities=22% Similarity=0.341 Sum_probs=53.1
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcc
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYD 205 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FD 205 (535)
+...++++|||||||++.+|. .|+++ +..|+++|+|+++++.+++.+.. ..+++++++|+.+.+.. .||
T Consensus 25 ~~~~~~~~VLEiG~G~G~lt~-~L~~~---~~~v~~iE~d~~~~~~l~~~~~~----~~~v~v~~~D~~~~~~~--~~d 93 (253)
T TIGR00755 25 ANVLEGDVVLEIGPGLGALTE-PLLKR---AKKVTAIEIDPRLAEILRKLLSL----YERLEVIEGDALKVDLP--DFP 93 (253)
T ss_pred cCCCCcCEEEEeCCCCCHHHH-HHHHh---CCcEEEEECCHHHHHHHHHHhCc----CCcEEEEECchhcCChh--HcC
Confidence 445778999999999866665 45552 35799999999999999987754 25799999999876543 455
No 183
>PHA03412 putative methyltransferase; Provisional
Probab=98.18 E-value=1.1e-05 Score=81.26 Aligned_cols=97 Identities=18% Similarity=0.231 Sum_probs=68.6
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcC--CCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHM--KSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII 208 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l--~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf 208 (535)
.+.+|||+|||+ |.-++.++++.. +..+|++||+|+.+++.|++++. ++.|+++|+.+... .+.||+|+
T Consensus 49 ~~grVLDlG~GS-G~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-------~~~~~~~D~~~~~~-~~~FDlII 119 (241)
T PHA03412 49 TSGSVVDLCAGI-GGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-------EATWINADALTTEF-DTLFDMAI 119 (241)
T ss_pred CCCEEEEccChH-HHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-------CCEEEEcchhcccc-cCCccEEE
Confidence 367999999996 555566665321 45799999999999999997742 47899999875443 34799999
Q ss_pred eccccCC------------hhhHHHHHHHHHhhcccCeEE
Q 041205 209 LAALAGN------------EEEKAKILGHIRKYMKEGGVL 236 (535)
Q Consensus 209 iaALVgm------------~edK~~VL~eL~rvLKPGGvL 236 (535)
..--.+. ..--..+++...+.++||+.|
T Consensus 120 sNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~I 159 (241)
T PHA03412 120 SNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFI 159 (241)
T ss_pred ECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEE
Confidence 6522211 122456888888877777763
No 184
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.17 E-value=9.7e-06 Score=84.61 Aligned_cols=96 Identities=21% Similarity=0.256 Sum_probs=64.0
Q ss_pred cchhhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCe
Q 041205 108 YYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRM 187 (535)
Q Consensus 108 Yy~NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI 187 (535)
||..-....+.-+......++..++ +|+|+=|| +|.-++.||+ ...+|+|||+++++++.|+++++..| + +++
T Consensus 174 FfQvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG-~G~fsl~la~---~~~~V~gvE~~~~av~~A~~Na~~N~-i-~n~ 246 (352)
T PF05958_consen 174 FFQVNPEQNEKLYEQALEWLDLSKG-DVLDLYCG-VGTFSLPLAK---KAKKVIGVEIVEEAVEDARENAKLNG-I-DNV 246 (352)
T ss_dssp ---SBHHHHHHHHHHHHHHCTT-TT-EEEEES-T-TTCCHHHHHC---CSSEEEEEES-HHHHHHHHHHHHHTT----SE
T ss_pred CccCcHHHHHHHHHHHHHHhhcCCC-cEEEEeec-CCHHHHHHHh---hCCeEEEeeCCHHHHHHHHHHHHHcC-C-Ccc
Confidence 3433333444445555555654444 89999999 5777789988 56899999999999999999999999 5 789
Q ss_pred EEEEccccccccC--------------C--CCcceEEec
Q 041205 188 KFLTCDIMEVKEK--------------L--GEYDCIILA 210 (535)
Q Consensus 188 ~Fi~GDA~el~~d--------------L--~~FDvVfia 210 (535)
+|+++++.++... + ..+|+|++|
T Consensus 247 ~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilD 285 (352)
T PF05958_consen 247 EFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILD 285 (352)
T ss_dssp EEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE-
T ss_pred eEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEc
Confidence 9999988765321 1 147999998
No 185
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.16 E-value=1.7e-05 Score=81.37 Aligned_cols=106 Identities=25% Similarity=0.327 Sum_probs=79.6
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcC-CCeEEEEccccccccC---CCCc
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIE-KRMKFLTCDIMEVKEK---LGEY 204 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls-~rI~Fi~GDA~el~~d---L~~F 204 (535)
..+++||++=|=++|+|.- .|. .|+ +|++||.|..+++.|+++++.-| ++ ++++|+++|+.+.... -+.|
T Consensus 122 ~~gkrvLnlFsYTGgfsv~-Aa~---gGA~~v~~VD~S~~al~~a~~N~~lNg-~~~~~~~~~~~Dvf~~l~~~~~~~~f 196 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVA-AAA---GGAKEVVSVDSSKRALEWAKENAALNG-LDLDRHRFIQGDVFKFLKRLKKGGRF 196 (286)
T ss_dssp CTTCEEEEET-TTTHHHHH-HHH---TTESEEEEEES-HHHHHHHHHHHHHTT--CCTCEEEEES-HHHHHHHHHHTT-E
T ss_pred cCCCceEEecCCCCHHHHH-HHH---CCCCEEEEEeCCHHHHHHHHHHHHHcC-CCccceEEEecCHHHHHHHHhcCCCC
Confidence 4589999999987777753 334 465 79999999999999999999888 55 7899999999875432 2469
Q ss_pred ceEEeccc--c-C-C--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 205 DCIILAAL--A-G-N--EEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 205 DvVfiaAL--V-g-m--~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
|+|++|-- . + . ..++.+++..+.+.++|||.|++-+
T Consensus 197 D~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 197 DLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp EEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 99999832 1 2 1 5688899999999999999988755
No 186
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.15 E-value=1.1e-05 Score=80.88 Aligned_cols=120 Identities=17% Similarity=0.302 Sum_probs=83.5
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHH-HHhhcCCcCCCeEEEEcccc-ccccCCCCcceE
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARR-IVSSDDEIEKRMKFLTCDIM-EVKEKLGEYDCI 207 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~-li~~lG~Ls~rI~Fi~GDA~-el~~dL~~FDvV 207 (535)
..+.=|||||||+ |+|+-.+.. +|-..+|+|||+.|++.|.+ .++ | .++.+|-- -+++..+.||-|
T Consensus 49 ~~~~~iLDIGCGs-GLSg~vL~~---~Gh~wiGvDiSpsML~~a~~~e~e--g------dlil~DMG~GlpfrpGtFDg~ 116 (270)
T KOG1541|consen 49 PKSGLILDIGCGS-GLSGSVLSD---SGHQWIGVDISPSMLEQAVERELE--G------DLILCDMGEGLPFRPGTFDGV 116 (270)
T ss_pred CCCcEEEEeccCC-Ccchheecc---CCceEEeecCCHHHHHHHHHhhhh--c------CeeeeecCCCCCCCCCccceE
Confidence 3578999999995 899888866 78899999999999999996 222 4 24445543 356666789988
Q ss_pred EeccccCC-----------hhhHHHHHHHHHhhcccCeEEEEEcccccccccCCCCcc--c-------cCCcEEE-EEEc
Q 041205 208 ILAALAGN-----------EEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEH--E-------LFDFKVL-SIFH 266 (535)
Q Consensus 208 fiaALVgm-----------~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdp--d-------l~GFeil-~v~h 266 (535)
+.-+.+.+ ..--..++..++..|++|++-++- .||..+. | .+||.-- .+-+
T Consensus 117 ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q--------fYpen~~q~d~i~~~a~~aGF~GGlvVd~ 188 (270)
T KOG1541|consen 117 ISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ--------FYPENEAQIDMIMQQAMKAGFGGGLVVDW 188 (270)
T ss_pred EEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE--------ecccchHHHHHHHHHHHhhccCCceeeec
Confidence 85555432 122246788899999999988874 5665443 2 2677543 3445
Q ss_pred CCC
Q 041205 267 PTN 269 (535)
Q Consensus 267 P~~ 269 (535)
|..
T Consensus 189 Pes 191 (270)
T KOG1541|consen 189 PES 191 (270)
T ss_pred ccc
Confidence 654
No 187
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=98.13 E-value=7.7e-06 Score=82.65 Aligned_cols=176 Identities=12% Similarity=0.046 Sum_probs=108.4
Q ss_pred chhHHHHHHHHHHhhcCCcchhhhcCChHHHHHHHHHHHHHHHHhHhhh--hHHHhHhhccCCCccccccCccchhhHHh
Q 041205 38 SKQVNILFSHLVKLCILPSSIDIKALPQEVQQMRQSLIILCARAESLLE--LEFATYLSKISLPLNDLNRFPYYENYVKL 115 (535)
Q Consensus 38 S~~VNaLFt~LV~lC~~~~~~dv~~l~~~vq~l~~~Lr~lca~AE~~LE--~h~A~~Lls~~~pl~~L~~FpYy~NYv~L 115 (535)
-..+++.-.+|-..|.--.+ -.|+...+...|+. +.+.+.-| +.|.+.+++...+.. .+++++..+
T Consensus 28 k~a~k~~k~~LH~i~gay~~-----~~p~~~~ll~~l~~--a~~~~D~e~~~~~~r~lL~~HaST~-----ERl~~Ld~f 95 (251)
T PF07091_consen 28 KEAVKATKRRLHQIFGAYLE-----GRPDYDALLRKLQE--ALDVGDPEAIRAWCRRLLAGHASTR-----ERLPNLDEF 95 (251)
T ss_dssp HHHHHHHHHHHHCCTCCCSS-----S---HHHHHHHHHH--HHCTTHHHHHHHHHHHHHHTSHHHH-----CCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc-----CCCCHHHHHHHHHh--ccCcCCHHHHHHHHHHHHhhccchh-----hhhhhHHHH
Confidence 35588888888888875331 13456666666666 22222222 344566666654322 344556666
Q ss_pred HHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc
Q 041205 116 AKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM 195 (535)
Q Consensus 116 irlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~ 195 (535)
....++. +.++.+|+|||||--|++..||.. .+++.++|+|||..+++.....+..+| . +.++...|..
T Consensus 96 Y~~if~~------~~~p~sVlDigCGlNPlalp~~~~--~~~a~Y~a~DID~~~ve~l~~~l~~l~-~--~~~~~v~Dl~ 164 (251)
T PF07091_consen 96 YDEIFGR------IPPPDSVLDIGCGLNPLALPWMPE--APGATYIAYDIDSQLVEFLNAFLAVLG-V--PHDARVRDLL 164 (251)
T ss_dssp HHHHCCC------S---SEEEEET-TTCHHHHHTTTS--STT-EEEEEESBHHHHHHHHHHHHHTT----CEEEEEE-TT
T ss_pred HHHHHhc------CCCCchhhhhhccCCceehhhccc--CCCcEEEEEeCCHHHHHHHHHHHHhhC-C--CcceeEeeee
Confidence 6555553 356999999999999999999965 688999999999999999999999998 3 5677777875
Q ss_pred ccccCCCCcceEEeccccCC-hhhHHHHHHHHHhhcccCeEEE
Q 041205 196 EVKEKLGEYDCIILAALAGN-EEEKAKILGHIRKYMKEGGVLL 237 (535)
Q Consensus 196 el~~dL~~FDvVfiaALVgm-~edK~~VL~eL~rvLKPGGvLV 237 (535)
.-+ +-...|+.++.=.+++ ..++...--.+.+.++-.-++|
T Consensus 165 ~~~-~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~~~~~vV 206 (251)
T PF07091_consen 165 SDP-PKEPADLALLLKTLPCLERQRRGAGLELLDALRSPHVVV 206 (251)
T ss_dssp TSH-TTSEESEEEEET-HHHHHHHSTTHHHHHHHHSCESEEEE
T ss_pred ccC-CCCCcchhhHHHHHHHHHHHhcchHHHHHHHhCCCeEEE
Confidence 422 2234899998655544 3334444344444454444444
No 188
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.11 E-value=9e-06 Score=77.91 Aligned_cols=126 Identities=13% Similarity=0.152 Sum_probs=85.1
Q ss_pred hhHHhHHHHHHHHHHhhC-C-CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeE
Q 041205 111 NYVKLAKLEYGALIENTG-V-AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMK 188 (535)
Q Consensus 111 NYv~LirlE~~lL~~~~~-l-~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~ 188 (535)
+..+....=.+.+...+. . -.+.+|||+=||++.+..=.+.+ ...+|+.||.|++++..-+++++.+| +.++++
T Consensus 20 ~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSR---GA~~v~fVE~~~~a~~~i~~N~~~l~-~~~~~~ 95 (183)
T PF03602_consen 20 NTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSR---GAKSVVFVEKNRKAIKIIKKNLEKLG-LEDKIR 95 (183)
T ss_dssp TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHT---T-SEEEEEES-HHHHHHHHHHHHHHT--GGGEE
T ss_pred CcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHHhC-CCccee
Confidence 344444444444444342 1 46899999976654444334444 34689999999999999999999999 777899
Q ss_pred EEEccccccccC----CCCcceEEeccccCChhh-HHHHHHHHH--hhcccCeEEEEEcc
Q 041205 189 FLTCDIMEVKEK----LGEYDCIILAALAGNEEE-KAKILGHIR--KYMKEGGVLLVRSA 241 (535)
Q Consensus 189 Fi~GDA~el~~d----L~~FDvVfiaALVgm~ed-K~~VL~eL~--rvLKPGGvLVvRsa 241 (535)
++++|+...... ...||+||+|--... .. ...+++.+. ..|++||+|++-..
T Consensus 96 v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~-~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 96 VIKGDAFKFLLKLAKKGEKFDIIFLDPPYAK-GLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp EEESSHHHHHHHHHHCTS-EEEEEE--STTS-CHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred eeccCHHHHHHhhcccCCCceEEEECCCccc-chHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 999998765532 356999999955433 23 478888887 78999999999764
No 189
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.10 E-value=6.8e-06 Score=79.82 Aligned_cols=114 Identities=18% Similarity=0.295 Sum_probs=74.0
Q ss_pred CCCCEEEEEccCCC--hhhHHHHHhhc---CC--CcEEEEEeCChhHHHHHHHH------Hh-------------hcC--
Q 041205 130 AQLKKVAFVGSGPM--PLTSIILASQH---MK--STHFDNIDIDETANNLARRI------VS-------------SDD-- 181 (535)
Q Consensus 130 ~~pkRVLeIGSGpl--PlTAI~LAk~~---l~--Ga~VtGIDIDpeAIelAR~l------i~-------------~lG-- 181 (535)
.++-||.-.||+++ |||..++.... .. ..+|+|.|+|+.+++.|++- ++ ..|
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 36789999999875 56655555431 11 47999999999999999863 11 111
Q ss_pred -----CcCCCeEEEEccccccccCCCCcceEEeccccC-C-hhhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205 182 -----EIEKRMKFLTCDIMEVKEKLGEYDCIILAALAG-N-EEEKAKILGHIRKYMKEGGVLLVRSAKG 243 (535)
Q Consensus 182 -----~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALVg-m-~edK~~VL~eL~rvLKPGGvLVvRsa~G 243 (535)
.+.++|+|...|..+.....+.||+||+-...- + .+.+.++++.+++.|+|||.|++-....
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE~ 178 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSES 178 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT--
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCcc
Confidence 024689999999988334456799999887653 3 7889999999999999999999966543
No 190
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.09 E-value=2.5e-05 Score=76.54 Aligned_cols=124 Identities=11% Similarity=0.148 Sum_probs=78.9
Q ss_pred hhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcE-EEEEeCChhHHHHHHHHHh-------hcCC
Q 041205 111 NYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTH-FDNIDIDETANNLARRIVS-------SDDE 182 (535)
Q Consensus 111 NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~-VtGIDIDpeAIelAR~li~-------~lG~ 182 (535)
.|.++.-.-+..+...+++.+.+..+||||| +|-..+..|- ..+++ .+|||+.+...+.|+...+ ..|.
T Consensus 22 ~YGEi~~~~~~~il~~~~l~~~dvF~DlGSG-~G~~v~~aal--~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~ 98 (205)
T PF08123_consen 22 TYGEISPEFVSKILDELNLTPDDVFYDLGSG-VGNVVFQAAL--QTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK 98 (205)
T ss_dssp CGGGCHHHHHHHHHHHTT--TT-EEEEES-T-TSHHHHHHHH--HH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB
T ss_pred ceeecCHHHHHHHHHHhCCCCCCEEEECCCC-CCHHHHHHHH--HcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc
Confidence 4777766666666666778899999999999 6777666665 35666 9999999999999986543 3452
Q ss_pred cCCCeEEEEcccccccc---CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205 183 IEKRMKFLTCDIMEVKE---KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 183 Ls~rI~Fi~GDA~el~~---dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVv 238 (535)
-..++++..||..+... .+.+-|+||+.+.. ..++-..-|......||||.+||.
T Consensus 99 ~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~-F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 99 RPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC-FDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp ---EEEEECS-TTTHHHHHHHGHC-SEEEE--TT-T-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred ccccceeeccCccccHhHhhhhcCCCEEEEeccc-cCHHHHHHHHHHHhcCCCCCEEEE
Confidence 13578999999865321 23567999998665 225666666788888999999886
No 191
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.09 E-value=1.1e-05 Score=83.03 Aligned_cols=80 Identities=20% Similarity=0.102 Sum_probs=63.2
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC----CCc
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL----GEY 204 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL----~~F 204 (535)
+.++..++|.+||.+|.|..++.. ..++++|+|+|+|++|++.|++.+.. + ++++|+++|..++...+ ..|
T Consensus 17 ~~pg~~vlD~TlG~GGhS~~il~~-~~~~g~VigiD~D~~al~~ak~~L~~-~---~ri~~i~~~f~~l~~~l~~~~~~v 91 (296)
T PRK00050 17 IKPDGIYVDGTFGGGGHSRAILER-LGPKGRLIAIDRDPDAIAAAKDRLKP-F---GRFTLVHGNFSNLKEVLAEGLGKV 91 (296)
T ss_pred CCCCCEEEEeCcCChHHHHHHHHh-CCCCCEEEEEcCCHHHHHHHHHhhcc-C---CcEEEEeCCHHHHHHHHHcCCCcc
Confidence 467889999999988888766633 33478999999999999999988765 3 68999999988754322 258
Q ss_pred ceEEecccc
Q 041205 205 DCIILAALA 213 (535)
Q Consensus 205 DvVfiaALV 213 (535)
|.|+++-.+
T Consensus 92 DgIl~DLGv 100 (296)
T PRK00050 92 DGILLDLGV 100 (296)
T ss_pred CEEEECCCc
Confidence 888887655
No 192
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.08 E-value=7.2e-05 Score=58.93 Aligned_cols=102 Identities=20% Similarity=0.250 Sum_probs=70.0
Q ss_pred EEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc--cccCC-CCcceEEecc
Q 041205 135 VAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME--VKEKL-GEYDCIILAA 211 (535)
Q Consensus 135 VLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e--l~~dL-~~FDvVfiaA 211 (535)
|+++|||+ |... .++.....+..++|+|+++.+++.++......+ . ..+.+..+|... .+... ..||++....
T Consensus 52 ~ld~~~g~-g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 127 (257)
T COG0500 52 VLDIGCGT-GRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAG-L-GLVDFVVADALGGVLPFEDSASFDLVISLL 127 (257)
T ss_pred eEEecCCc-CHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcC-C-CceEEEEeccccCCCCCCCCCceeEEeeee
Confidence 99999996 4443 444411222589999999999999666554422 1 117888888765 34433 2699994433
Q ss_pred ccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 212 LAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 212 LVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
..+... ....+.++.+.++|||.+++...
T Consensus 128 ~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 128 VLHLLP-PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred ehhcCC-HHHHHHHHHHhcCCCcEEEEEec
Confidence 332222 79999999999999999988765
No 193
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.07 E-value=2.4e-05 Score=82.22 Aligned_cols=104 Identities=21% Similarity=0.349 Sum_probs=77.6
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII 208 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf 208 (535)
+-.++.|||||||+ |.=+++-|++ ...+|++||.+.-+ +.|++++..-| +++.|+++.|.+.++.-+....|+|+
T Consensus 58 lf~dK~VlDVGcGt-GILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~-~~~ii~vi~gkvEdi~LP~eKVDiIv 132 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGT-GILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNG-LEDVITVIKGKVEDIELPVEKVDIIV 132 (346)
T ss_pred hcCCCEEEEcCCCc-cHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcC-ccceEEEeecceEEEecCccceeEEe
Confidence 45689999999996 6666777773 35789999999777 99999999999 88999999999998755556799998
Q ss_pred eccccCChhhHHHHHHHH----HhhcccCeEEEE
Q 041205 209 LAALAGNEEEKAKILGHI----RKYMKEGGVLLV 238 (535)
Q Consensus 209 iaALVgm~edK~~VL~eL----~rvLKPGGvLVv 238 (535)
.. -.|.---++..|+.+ -+.|+|||++.=
T Consensus 133 SE-WMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 133 SE-WMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred eh-hhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 65 223111122333332 467999998753
No 194
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.06 E-value=4.9e-05 Score=74.45 Aligned_cols=136 Identities=19% Similarity=0.266 Sum_probs=89.1
Q ss_pred EEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccccC
Q 041205 135 VAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAG 214 (535)
Q Consensus 135 VLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALVg 214 (535)
|+||||- -||-++.|.++ -.-.+++++|+++.-++.|++.+++.| +.++|+++.||+.+...+..+.|.|+++.+ |
T Consensus 1 vaDIGtD-HgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~-l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM-G 76 (205)
T PF04816_consen 1 VADIGTD-HGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYG-LEDRIEVRLGDGLEVLKPGEDVDTIVIAGM-G 76 (205)
T ss_dssp EEEET-S-TTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT--TTTEEEEE-SGGGG--GGG---EEEEEEE--
T ss_pred Cceeccc-hhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcC-CcccEEEEECCcccccCCCCCCCEEEEecC-C
Confidence 7899998 69999999883 333579999999999999999999999 899999999999876554334899999833 2
Q ss_pred ChhhHHHHHHHHHhhcccCeEEEEEcc---cccccccCCCCccccCCcEEEE--EEcCCCcceeeeEEEecCC
Q 041205 215 NEEEKAKILGHIRKYMKEGGVLLVRSA---KGARAFLYPVVEHELFDFKVLS--IFHPTNDVINSVVLLQLPK 282 (535)
Q Consensus 215 m~edK~~VL~eL~rvLKPGGvLVvRsa---~GlR~fLYP~Vdpdl~GFeil~--v~hP~~eVINSVVvARK~~ 282 (535)
-.--.++|+.....++....|++-.- .-+|.+++- .||.+.. .+.-.+ -+-.++.+.++.
T Consensus 77 -G~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~------~gf~I~~E~lv~e~~-~~YeIi~~~~~~ 141 (205)
T PF04816_consen 77 -GELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYE------NGFEIIDEDLVEENG-RFYEIIVAERGE 141 (205)
T ss_dssp -HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHH------TTEEEEEEEEEEETT-EEEEEEEEEESS
T ss_pred -HHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHH------CCCEEEEeEEEeECC-EEEEEEEEEeCC
Confidence 35567777777776665555555322 113333333 5998875 223333 334577777653
No 195
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.05 E-value=1.4e-05 Score=80.68 Aligned_cols=120 Identities=20% Similarity=0.272 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCC--cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc
Q 041205 115 LAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKS--THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC 192 (535)
Q Consensus 115 LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~G--a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G 192 (535)
....|+..+..... ..+.+|||||||. |-|..=+.+ ..++ -.|.+.|.+|.|+++-++....+. .++.--+.
T Consensus 56 wL~~Efpel~~~~~-~~~~~ilEvGCGv-GNtvfPll~-~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e---~~~~afv~ 129 (264)
T KOG2361|consen 56 WLLREFPELLPVDE-KSAETILEVGCGV-GNTVFPLLK-TSPNNRLKVYACDFSPRAIELVKKSSGYDE---SRVEAFVW 129 (264)
T ss_pred HHHHhhHHhhCccc-cChhhheeeccCC-Ccccchhhh-cCCCCCeEEEEcCCChHHHHHHHhccccch---hhhcccce
Confidence 34456665554333 3444899999995 666665555 3444 889999999999999888765543 34433334
Q ss_pred cccc--c--ccCCCCcce---EEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 193 DIME--V--KEKLGEYDC---IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 193 DA~e--l--~~dL~~FDv---VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
|... + +...+.+|. ||+-+.++. +.-..++.++.+++||||.|++|++
T Consensus 130 Dlt~~~~~~~~~~~svD~it~IFvLSAi~p-ek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 130 DLTSPSLKEPPEEGSVDIITLIFVLSAIHP-EKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred eccchhccCCCCcCccceEEEEEEEeccCh-HHHHHHHHHHHHHhCCCcEEEEeec
Confidence 4331 1 112245675 444445542 4456899999999999999999984
No 196
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=4.4e-05 Score=82.34 Aligned_cols=107 Identities=18% Similarity=0.272 Sum_probs=83.4
Q ss_pred HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205 120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE 199 (535)
Q Consensus 120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~ 199 (535)
+......+...++++|+|.=|| .|.-++.+|+ ...+|+|+|+++++++.|+++++..| + ++++|+.+|+.++..
T Consensus 282 ~~~a~~~~~~~~~~~vlDlYCG-vG~f~l~lA~---~~~~V~gvEi~~~aV~~A~~NA~~n~-i-~N~~f~~~~ae~~~~ 355 (432)
T COG2265 282 YETALEWLELAGGERVLDLYCG-VGTFGLPLAK---RVKKVHGVEISPEAVEAAQENAAANG-I-DNVEFIAGDAEEFTP 355 (432)
T ss_pred HHHHHHHHhhcCCCEEEEeccC-CChhhhhhcc---cCCEEEEEecCHHHHHHHHHHHHHcC-C-CcEEEEeCCHHHHhh
Confidence 4444445555788999999999 6788899997 67899999999999999999999999 5 459999999998877
Q ss_pred CCC---CcceEEecccc-CChhhHHHHHHHHHhhcccCeEE
Q 041205 200 KLG---EYDCIILAALA-GNEEEKAKILGHIRKYMKEGGVL 236 (535)
Q Consensus 200 dL~---~FDvVfiaALV-gm~edK~~VL~eL~rvLKPGGvL 236 (535)
... .||.|++|--= |+ -..+++.+.+ ++|-.++
T Consensus 356 ~~~~~~~~d~VvvDPPR~G~---~~~~lk~l~~-~~p~~Iv 392 (432)
T COG2265 356 AWWEGYKPDVVVVDPPRAGA---DREVLKQLAK-LKPKRIV 392 (432)
T ss_pred hccccCCCCEEEECCCCCCC---CHHHHHHHHh-cCCCcEE
Confidence 653 58999999332 42 3467777776 4554433
No 197
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=5.4e-05 Score=79.40 Aligned_cols=113 Identities=19% Similarity=0.229 Sum_probs=87.0
Q ss_pred hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC--C-
Q 041205 126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL--G- 202 (535)
Q Consensus 126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL--~- 202 (535)
++...++.+|||.=++|+|=|+.+.+--.-+|..|+++|+|+..+..-+.+++++| + .++..++.|+...+... .
T Consensus 151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG-~-~nv~~~~~d~~~~~~~~~~~~ 228 (355)
T COG0144 151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG-V-RNVIVVNKDARRLAELLPGGE 228 (355)
T ss_pred HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC-C-CceEEEecccccccccccccC
Confidence 44668999999999999999986654411235778999999999999999999999 5 45888888886554332 2
Q ss_pred CcceEEecccc---CCh---hh----------------HHHHHHHHHhhcccCeEEEEEc
Q 041205 203 EYDCIILAALA---GNE---EE----------------KAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 203 ~FDvVfiaALV---gm~---ed----------------K~~VL~eL~rvLKPGGvLVvRs 240 (535)
.||.|++|+-= |+. ++ =.++|.+..+.+||||+|++.+
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 39999998642 321 11 2468899999999999999976
No 198
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.03 E-value=3.1e-05 Score=77.05 Aligned_cols=93 Identities=14% Similarity=0.135 Sum_probs=59.0
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHH-HHHHHh--hcCCcCCCeEEEEccccccccCCCCcce
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNL-ARRIVS--SDDEIEKRMKFLTCDIMEVKEKLGEYDC 206 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIel-AR~li~--~lG~Ls~rI~Fi~GDA~el~~dL~~FDv 206 (535)
..+++||||||||+++|- +++++ ...+|++||+++.++.. .++..+ ..+ . .+++ .-+..+...++..||+
T Consensus 74 ~~~~~vlDiG~gtG~~t~-~l~~~--ga~~v~avD~~~~~l~~~l~~~~~v~~~~-~-~ni~--~~~~~~~~~d~~~~Dv 146 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTD-CALQK--GAKEVYGVDVGYNQLAEKLRQDERVKVLE-R-TNIR--YVTPADIFPDFATFDV 146 (228)
T ss_pred CCCCEEEEcccCCCHHHH-HHHHc--CCCEEEEEeCCHHHHHHHHhcCCCeeEee-c-CCcc--cCCHhHcCCCceeeeE
Confidence 467899999999977774 56662 34689999999987765 222111 112 1 2333 2223333334456898
Q ss_pred EEeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205 207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVv 238 (535)
+|++ +. .++..+.+.|+| |.+++
T Consensus 147 sfiS-~~-------~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 147 SFIS-LI-------SILPELDLLLNP-NDLTL 169 (228)
T ss_pred EEee-hH-------hHHHHHHHHhCc-CeEEE
Confidence 8885 32 268899999999 65544
No 199
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.02 E-value=5.4e-05 Score=77.17 Aligned_cols=136 Identities=18% Similarity=0.267 Sum_probs=94.0
Q ss_pred ccchhhHHhHHHHHHHHHHhhCCC--CCCEEEEEccCCC--hhhHHHHHhhcCC-----CcEEEEEeCChhHHHHHHHHH
Q 041205 107 PYYENYVKLAKLEYGALIENTGVA--QLKKVAFVGSGPM--PLTSIILASQHMK-----STHFDNIDIDETANNLARRIV 177 (535)
Q Consensus 107 pYy~NYv~LirlE~~lL~~~~~l~--~pkRVLeIGSGpl--PlTAI~LAk~~l~-----Ga~VtGIDIDpeAIelAR~li 177 (535)
.+|.+....-..+...+....... .+-||.-+||+++ |||.-++...+.+ ..+|++.|||..+++.|+.-+
T Consensus 70 ~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~ 149 (268)
T COG1352 70 EFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGI 149 (268)
T ss_pred hhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCC
Confidence 445554444444444433222111 4789999999876 6775555554553 589999999999999997531
Q ss_pred -------------------hhcCC--------cCCCeEEEEccccccccCCCCcceEEeccccC-C-hhhHHHHHHHHHh
Q 041205 178 -------------------SSDDE--------IEKRMKFLTCDIMEVKEKLGEYDCIILAALAG-N-EEEKAKILGHIRK 228 (535)
Q Consensus 178 -------------------~~lG~--------Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALVg-m-~edK~~VL~eL~r 228 (535)
.+.++ +.+.|.|...|..+-....+.||+||+-..+- + .+.+.+++...+.
T Consensus 150 Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~ 229 (268)
T COG1352 150 YPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFAD 229 (268)
T ss_pred CChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHH
Confidence 11110 12468888888865433446799999987764 3 8999999999999
Q ss_pred hcccCeEEEEEccc
Q 041205 229 YMKEGGVLLVRSAK 242 (535)
Q Consensus 229 vLKPGGvLVvRsa~ 242 (535)
.|+|||+|++-...
T Consensus 230 ~L~~gG~LflG~sE 243 (268)
T COG1352 230 SLKPGGLLFLGHSE 243 (268)
T ss_pred HhCCCCEEEEccCc
Confidence 99999999996543
No 200
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.02 E-value=0.0001 Score=77.74 Aligned_cols=157 Identities=18% Similarity=0.187 Sum_probs=107.5
Q ss_pred ccchhhHHhHHHHHHHHHHhh-CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCC
Q 041205 107 PYYENYVKLAKLEYGALIENT-GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEK 185 (535)
Q Consensus 107 pYy~NYv~LirlE~~lL~~~~-~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~ 185 (535)
||+.. -.+..+++.....+ .+.+|+.|||==||++|+ +.=|. +-|++++|.|+|..|++-|+.+++..| + .
T Consensus 174 Pf~~p--~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgi--LiEag--l~G~~viG~Did~~mv~gak~Nl~~y~-i-~ 245 (347)
T COG1041 174 PFFRP--GSMDPRLARAMVNLARVKRGELVLDPFCGTGGI--LIEAG--LMGARVIGSDIDERMVRGAKINLEYYG-I-E 245 (347)
T ss_pred CccCc--CCcCHHHHHHHHHHhccccCCEeecCcCCccHH--HHhhh--hcCceEeecchHHHHHhhhhhhhhhhC-c-C
Confidence 55433 23344544444433 578899999877775432 22233 579999999999999999999999998 4 4
Q ss_pred CeEEEEc-cccccccCCCCcceEEeccccCC---------hhhHHHHHHHHHhhcccCeEEEEEcccccccccCCCCcc-
Q 041205 186 RMKFLTC-DIMEVKEKLGEYDCIILAALAGN---------EEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEH- 254 (535)
Q Consensus 186 rI~Fi~G-DA~el~~dL~~FDvVfiaALVgm---------~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdp- 254 (535)
...+..+ ||.+++.+.+.||.|..|--.|- .+-+.++|+...++|++||.+++-.+ +.+.+.
T Consensus 246 ~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p-------~~~~~~~ 318 (347)
T COG1041 246 DYPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP-------RDPRHEL 318 (347)
T ss_pred ceeEEEecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC-------CcchhhH
Confidence 5666666 99998865555999999865542 23488999999999999999988554 111222
Q ss_pred ccCCcEEEE----EEcCCCcceeeeEEEec
Q 041205 255 ELFDFKVLS----IFHPTNDVINSVVLLQL 280 (535)
Q Consensus 255 dl~GFeil~----v~hP~~eVINSVVvARK 280 (535)
...||++.. +.|- .....+.++|+
T Consensus 319 ~~~~f~v~~~~~~~~H~--sLtR~i~v~~~ 346 (347)
T COG1041 319 EELGFKVLGRFTMRVHG--SLTRVIYVVRK 346 (347)
T ss_pred hhcCceEEEEEEEeecC--ceEEEEEEEec
Confidence 336888764 3332 24455666654
No 201
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.01 E-value=4.2e-05 Score=80.42 Aligned_cols=112 Identities=24% Similarity=0.276 Sum_probs=91.8
Q ss_pred HHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc
Q 041205 118 LEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME 196 (535)
Q Consensus 118 lE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e 196 (535)
.|...+.... ..|.+|+|.=+|-+|+ +|-+|+ .|. .|+++|++|.+++..+++++.-+ +.++|..++||+.+
T Consensus 177 ~ER~Rva~~v--~~GE~V~DmFAGVGpf-si~~Ak---~g~~~V~A~diNP~A~~~L~eNi~LN~-v~~~v~~i~gD~re 249 (341)
T COG2520 177 TERARVAELV--KEGETVLDMFAGVGPF-SIPIAK---KGRPKVYAIDINPDAVEYLKENIRLNK-VEGRVEPILGDARE 249 (341)
T ss_pred HHHHHHHhhh--cCCCEEEEccCCcccc-hhhhhh---cCCceEEEEecCHHHHHHHHHHHHhcC-ccceeeEEeccHHH
Confidence 6766666544 4599999998884444 477788 333 39999999999999999999988 78889999999999
Q ss_pred cccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 197 VKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 197 l~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+......||.|++-... .-..++....+.+++||++.+..
T Consensus 250 v~~~~~~aDrIim~~p~----~a~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 250 VAPELGVADRIIMGLPK----SAHEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred hhhccccCCEEEeCCCC----cchhhHHHHHHHhhcCcEEEEEe
Confidence 98887889999995333 45778899999999999998866
No 202
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.96 E-value=4.3e-05 Score=80.94 Aligned_cols=101 Identities=18% Similarity=0.188 Sum_probs=82.2
Q ss_pred CEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-CCcceEEec
Q 041205 133 KKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-GEYDCIILA 210 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-~~FDvVfia 210 (535)
-+|||..||+ |.=+|.++.+ .+| .+|+++|+|+++++..+++++..+ + .++.++++|+..+.... ..||+|++|
T Consensus 46 ~~vLD~faGs-G~rgir~a~e-~~ga~~Vv~nD~n~~Av~~i~~N~~~N~-~-~~~~v~~~Da~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 46 INIADALSAS-GIRAIRYAHE-IEGVREVFANDINPKAVESIKNNVEYNS-V-ENIEVPNEDAANVLRYRNRKFHVIDID 121 (374)
T ss_pred CEEEECCCch-hHHHHHHHhh-CCCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence 4899999996 5666777663 234 589999999999999999999888 4 47899999998776543 359999999
Q ss_pred cccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 211 ALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 211 ALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
- .| ....+++.+.+.+++||+|.+-..
T Consensus 122 P-fG---s~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 122 P-FG---TPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred C-CC---CcHHHHHHHHHhcccCCEEEEEec
Confidence 7 55 346799999999999999998754
No 203
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.85 E-value=8.6e-05 Score=81.23 Aligned_cols=109 Identities=15% Similarity=0.132 Sum_probs=85.5
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc--CCCCcceE
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE--KLGEYDCI 207 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~--dL~~FDvV 207 (535)
....-+|||||| .|-..+-+|+ ..|+..|+|||+....+..|.+.+.+.| + .++.++++|+..+.. ..+.+|-|
T Consensus 346 ~~~p~~lEIG~G-~G~~~~~~A~-~~p~~~~iGiE~~~~~~~~~~~~~~~~~-l-~N~~~~~~~~~~~~~~~~~~sv~~i 421 (506)
T PRK01544 346 EKRKVFLEIGFG-MGEHFINQAK-MNPDALFIGVEVYLNGVANVLKLAGEQN-I-TNFLLFPNNLDLILNDLPNNSLDGI 421 (506)
T ss_pred CCCceEEEECCC-chHHHHHHHH-hCCCCCEEEEEeeHHHHHHHHHHHHHcC-C-CeEEEEcCCHHHHHHhcCcccccEE
Confidence 457899999999 4666678888 4789999999999999999999998888 5 689999998754433 23459999
Q ss_pred EeccccCC-h--hhH-----HHHHHHHHhhcccCeEEEEEccc
Q 041205 208 ILAALAGN-E--EEK-----AKILGHIRKYMKEGGVLLVRSAK 242 (535)
Q Consensus 208 fiaALVgm-~--edK-----~~VL~eL~rvLKPGGvLVvRsa~ 242 (535)
|+..--.+ + ..| ..+++.+++.|+|||.|-+.+-+
T Consensus 422 ~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 422 YILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred EEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 98654433 1 112 46888999999999999998853
No 204
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=4e-05 Score=72.93 Aligned_cols=79 Identities=25% Similarity=0.372 Sum_probs=64.3
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
..+++|+++||| .|+-++-.+ ++....|+|+||||+++++.++++...- -++.+.++|+.++....+-||.+++
T Consensus 47 iEgkkl~DLgcg-cGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfE---vqidlLqcdildle~~~g~fDtavi 120 (185)
T KOG3420|consen 47 IEGKKLKDLGCG-CGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFE---VQIDLLQCDILDLELKGGIFDTAVI 120 (185)
T ss_pred ccCcchhhhcCc-hhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhh---hhhheeeeeccchhccCCeEeeEEe
Confidence 468999999999 466554443 3566789999999999999999999976 3789999999887766667999998
Q ss_pred ccccC
Q 041205 210 AALAG 214 (535)
Q Consensus 210 aALVg 214 (535)
.--.|
T Consensus 121 NppFG 125 (185)
T KOG3420|consen 121 NPPFG 125 (185)
T ss_pred cCCCC
Confidence 76655
No 205
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.81 E-value=0.00013 Score=74.12 Aligned_cols=134 Identities=17% Similarity=0.345 Sum_probs=80.7
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC--------------------------c
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE--------------------------I 183 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~--------------------------L 183 (535)
.++.+++||||||.-+.++.+++ +. -+|+..|..+.-.+.-++=++..|. +
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~-~f--~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l 131 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACE-WF--EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL 131 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGG-TE--EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHH-hh--cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence 56889999999998888777766 23 5799999998877644443333221 0
Q ss_pred CCCe-EEEEcccccccc--C---CC-CcceEEeccccC----ChhhHHHHHHHHHhhcccCeEEEEEccccc-----ccc
Q 041205 184 EKRM-KFLTCDIMEVKE--K---LG-EYDCIILAALAG----NEEEKAKILGHIRKYMKEGGVLLVRSAKGA-----RAF 247 (535)
Q Consensus 184 s~rI-~Fi~GDA~el~~--d---L~-~FDvVfiaALVg----m~edK~~VL~eL~rvLKPGGvLVvRsa~Gl-----R~f 247 (535)
...| .++.+|+...+. + +. .||+|+...-+. ..+.+.+.++++.+.|||||.|++-..-+. ..-
T Consensus 132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~ 211 (256)
T PF01234_consen 132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGH 211 (256)
T ss_dssp HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTE
T ss_pred HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCE
Confidence 0113 367788865321 1 22 399988653331 268999999999999999999999664221 111
Q ss_pred cCCCC--ccc-------cCCcEEEEEEc
Q 041205 248 LYPVV--EHE-------LFDFKVLSIFH 266 (535)
Q Consensus 248 LYP~V--dpd-------l~GFeil~v~h 266 (535)
-||.+ +.+ -.||.+....+
T Consensus 212 ~F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 212 KFPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp EEE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred ecccccCCHHHHHHHHHHcCCEEEeccc
Confidence 23332 221 28999987666
No 206
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.79 E-value=3.7e-05 Score=71.63 Aligned_cols=99 Identities=17% Similarity=0.262 Sum_probs=63.6
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc------cC----
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK------EK---- 200 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~------~d---- 200 (535)
.+.+|||+||+|+|+|...+-+ ..+.++|+|||+.+. .. + ..+.++++|..+.. ..
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~-~~~~~~v~avDl~~~-----------~~-~-~~~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQR-GGPAGRVVAVDLGPM-----------DP-L-QNVSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTS-TTTEEEEEEEESSST-----------GS---TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred cccEEEEcCCcccceeeeeeec-ccccceEEEEecccc-----------cc-c-cceeeeecccchhhHHHhhhhhcccc
Confidence 5699999999999999887733 225699999999987 11 1 45667777765421 11
Q ss_pred CCCcceEEecccc---CC--------hhhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205 201 LGEYDCIILAALA---GN--------EEEKAKILGHIRKYMKEGGVLLVRSAKG 243 (535)
Q Consensus 201 L~~FDvVfiaALV---gm--------~edK~~VL~eL~rvLKPGGvLVvRsa~G 243 (535)
...||+|+.|... |. ..--...+.-+.+.|+|||.+++.-.++
T Consensus 89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 1469999998722 11 1222334445567799999999876543
No 207
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.78 E-value=1.4e-05 Score=80.13 Aligned_cols=104 Identities=21% Similarity=0.278 Sum_probs=73.1
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCC----Ccce
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLG----EYDC 206 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~----~FDv 206 (535)
....|++.-||-+| -++.+|. .++.|++||+||.-+..||.+++-.| +.+||+|++||..++-..+. -+|+
T Consensus 94 ~~~~iidaf~g~gG-ntiqfa~---~~~~VisIdiDPikIa~AkhNaeiYG-I~~rItFI~GD~ld~~~~lq~~K~~~~~ 168 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGG-NTIQFAL---QGPYVIAIDIDPVKIACARHNAEVYG-VPDRITFICGDFLDLASKLKADKIKYDC 168 (263)
T ss_pred CcchhhhhhhcCCc-hHHHHHH---hCCeEEEEeccHHHHHHHhccceeec-CCceeEEEechHHHHHHHHhhhhheeee
Confidence 67889988888444 4466655 57899999999999999999999999 88999999999987654331 2678
Q ss_pred EEeccccCChhhHH-HHHHHHHhhcccCeEEEEEc
Q 041205 207 IILAALAGNEEEKA-KILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 207 VfiaALVgm~edK~-~VL~eL~rvLKPGGvLVvRs 240 (535)
||.+---|- +.|. .-+-.+..++.|.|.-++|.
T Consensus 169 vf~sppwgg-p~y~~~~~~DL~~~~~p~~~~~fk~ 202 (263)
T KOG2730|consen 169 VFLSPPWGG-PSYLRADVYDLETHLKPMGTKIFKS 202 (263)
T ss_pred eecCCCCCC-cchhhhhhhhhhhhcchhHHHHHHh
Confidence 888754432 2222 12333455555555444443
No 208
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.78 E-value=5.7e-05 Score=80.38 Aligned_cols=120 Identities=16% Similarity=0.197 Sum_probs=85.4
Q ss_pred HHHHHHhhCCCCCCEEEE--EccCCChhhHHHHHhhcCCC----------------------------c-------EEEE
Q 041205 120 YGALIENTGVAQLKKVAF--VGSGPMPLTSIILASQHMKS----------------------------T-------HFDN 162 (535)
Q Consensus 120 ~~lL~~~~~l~~pkRVLe--IGSGplPlTAI~LAk~~l~G----------------------------a-------~VtG 162 (535)
...+....+-.++..++| -|||++++=|-+|+....|| + .++|
T Consensus 180 AaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G 259 (381)
T COG0116 180 AAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG 259 (381)
T ss_pred HHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE
Confidence 344444444455566665 57777777777777532332 1 3789
Q ss_pred EeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccccCC-hhh-------HHHHHHHHHhhcccCe
Q 041205 163 IDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAGN-EEE-------KAKILGHIRKYMKEGG 234 (535)
Q Consensus 163 IDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALVgm-~ed-------K~~VL~eL~rvLKPGG 234 (535)
+|+|+.+++.|+.+++.+| +++.|+|.++|+.++..+...||+|+..--.|. ..+ |..+...+.+.++-.+
T Consensus 260 ~Did~r~i~~Ak~NA~~AG-v~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws 338 (381)
T COG0116 260 SDIDPRHIEGAKANARAAG-VGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWS 338 (381)
T ss_pred ecCCHHHHHHHHHHHHhcC-CCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999 899999999999988877678999998766654 222 3344445556666666
Q ss_pred EEEEEc
Q 041205 235 VLLVRS 240 (535)
Q Consensus 235 vLVvRs 240 (535)
+.|+-+
T Consensus 339 ~~v~tt 344 (381)
T COG0116 339 RYVFTT 344 (381)
T ss_pred eEEEEc
Confidence 666655
No 209
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.76 E-value=6.3e-05 Score=74.22 Aligned_cols=106 Identities=20% Similarity=0.216 Sum_probs=62.5
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhc--C-CCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc-----cCC
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQH--M-KSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK-----EKL 201 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~--l-~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~-----~dL 201 (535)
.+|+.|+|+|+ .-|.|++++|.-. + +.++|+|||||-..... ..++... +..+|+|++||..+.. ...
T Consensus 31 ~kPd~IIE~Gi-~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp-~~~rI~~i~Gds~d~~~~~~v~~~ 106 (206)
T PF04989_consen 31 LKPDLIIETGI-AHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHP-MSPRITFIQGDSIDPEIVDQVREL 106 (206)
T ss_dssp H--SEEEEE---TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG-----TTEEEEES-SSSTHHHHTSGSS
T ss_pred hCCCeEEEEec-CCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhcc-ccCceEEEECCCCCHHHHHHHHHh
Confidence 47999999999 5789999998622 2 67999999997654332 2234445 6689999999986422 112
Q ss_pred ---CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 202 ---GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 202 ---~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
....+|+.|+...+ +.-.+.|+.+...++||+++|+-+
T Consensus 107 ~~~~~~vlVilDs~H~~-~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 107 ASPPHPVLVILDSSHTH-EHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp ----SSEEEEESS-----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred hccCCceEEEECCCccH-HHHHHHHHHhCccCCCCCEEEEEe
Confidence 34568999887532 566778888999999999999966
No 210
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.75 E-value=0.00019 Score=73.05 Aligned_cols=135 Identities=17% Similarity=0.195 Sum_probs=97.2
Q ss_pred cccCccchhhHHhHHHHHHHHHH-hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcC
Q 041205 103 LNRFPYYENYVKLAKLEYGALIE-NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDD 181 (535)
Q Consensus 103 L~~FpYy~NYv~LirlE~~lL~~-~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG 181 (535)
+...+.|.+-.=.++.+-..+.. .+...++++|||.-+||+|=|. .+|..+...+.|++.|+++..+..-+..++++|
T Consensus 56 i~~l~~~~~G~~~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~-~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g 134 (283)
T PF01189_consen 56 ICSLPEFKNGLFYVQDESSQLVALALDPQPGERVLDMCAAPGGKTT-HLAELMGNKGEIVANDISPKRLKRLKENLKRLG 134 (283)
T ss_dssp GGGSHHHHTTSEEEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHH-HHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred hhhchhhhCCcEEecccccccccccccccccccccccccCCCCcee-eeeecccchhHHHHhccCHHHHHHHHHHHHhcC
Confidence 33444444433344555444433 3455889999999999999887 455534447899999999999999999999999
Q ss_pred CcCCCeEEEEcccccccc-CCC-CcceEEecccc---CC---hh----------------hHHHHHHHHHhhc----ccC
Q 041205 182 EIEKRMKFLTCDIMEVKE-KLG-EYDCIILAALA---GN---EE----------------EKAKILGHIRKYM----KEG 233 (535)
Q Consensus 182 ~Ls~rI~Fi~GDA~el~~-dL~-~FDvVfiaALV---gm---~e----------------dK~~VL~eL~rvL----KPG 233 (535)
+ .++...+.|+..... ... .||.|++|+-= |. .+ --.++|++..+.+ +||
T Consensus 135 -~-~~v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~g 212 (283)
T PF01189_consen 135 -V-FNVIVINADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPG 212 (283)
T ss_dssp ---SSEEEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEE
T ss_pred -C-ceEEEEeeccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCC
Confidence 4 678888899886532 223 49999998542 21 11 1246889999999 999
Q ss_pred eEEEEEc
Q 041205 234 GVLLVRS 240 (535)
Q Consensus 234 GvLVvRs 240 (535)
|++++-+
T Consensus 213 G~lvYsT 219 (283)
T PF01189_consen 213 GRLVYST 219 (283)
T ss_dssp EEEEEEE
T ss_pred CeEEEEe
Confidence 9999966
No 211
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.75 E-value=1.7e-05 Score=79.97 Aligned_cols=100 Identities=16% Similarity=0.213 Sum_probs=73.0
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC--CCcceE
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL--GEYDCI 207 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL--~~FDvV 207 (535)
.+=+++||+|||+ |++..-+-. --.+++|||||+.|+++|.+. |++ + ++.++|+..+..+. ..||+|
T Consensus 124 g~F~~~lDLGCGT-GL~G~~lR~---~a~~ltGvDiS~nMl~kA~eK----g~Y-D--~L~~Aea~~Fl~~~~~er~DLi 192 (287)
T COG4976 124 GPFRRMLDLGCGT-GLTGEALRD---MADRLTGVDISENMLAKAHEK----GLY-D--TLYVAEAVLFLEDLTQERFDLI 192 (287)
T ss_pred CccceeeecccCc-CcccHhHHH---HHhhccCCchhHHHHHHHHhc----cch-H--HHHHHHHHHHhhhccCCcccch
Confidence 3468999999995 899887744 236899999999999999864 212 1 23345554444322 459999
Q ss_pred EeccccCC-hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 208 ILAALAGN-EEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 208 fiaALVgm-~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
..+ .|-+ .-.-+.++.-+...|+|||.+++...
T Consensus 193 ~Aa-DVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 193 VAA-DVLPYLGALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred hhh-hHHHhhcchhhHHHHHHHhcCCCceEEEEec
Confidence 864 4433 56788999999999999999999763
No 212
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.74 E-value=0.00016 Score=81.94 Aligned_cols=83 Identities=19% Similarity=0.253 Sum_probs=62.3
Q ss_pred cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC--CCcceEEeccccCC-h---hhHHHHHHHHHhhcc
Q 041205 158 THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL--GEYDCIILAALAGN-E---EEKAKILGHIRKYMK 231 (535)
Q Consensus 158 a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL--~~FDvVfiaALVgm-~---edK~~VL~eL~rvLK 231 (535)
.+|+|+|+|+++++.|++++...| +.++|.|.++|+.++.... +.||+|+..--.|. . .+-..++..+.+.++
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~~g-~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 257 SKFYGSDIDPRVIQAARKNARRAG-VAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcC-CCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 379999999999999999999999 7889999999998876543 35999998755543 2 233345555545444
Q ss_pred ---cCeEEEEEcc
Q 041205 232 ---EGGVLLVRSA 241 (535)
Q Consensus 232 ---PGGvLVvRsa 241 (535)
||+.+.+-++
T Consensus 336 ~~~~g~~~~llt~ 348 (702)
T PRK11783 336 QQFGGWNAALFSS 348 (702)
T ss_pred HhCCCCeEEEEeC
Confidence 8887766654
No 213
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.72 E-value=0.00025 Score=74.99 Aligned_cols=125 Identities=23% Similarity=0.348 Sum_probs=88.7
Q ss_pred ccchhhHHhHHHH------------HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHH
Q 041205 107 PYYENYVKLAKLE------------YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLAR 174 (535)
Q Consensus 107 pYy~NYv~LirlE------------~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR 174 (535)
-||..|..|.+.. ..++...-..-.++-|+|||||. |+-+++-|+ ....+|.+|+-+ +|.+.||
T Consensus 141 ~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGS-GILS~FAaq--AGA~~vYAvEAS-~MAqyA~ 216 (517)
T KOG1500|consen 141 QYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGS-GILSFFAAQ--AGAKKVYAVEAS-EMAQYAR 216 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCc-cHHHHHHHH--hCcceEEEEehh-HHHHHHH
Confidence 5777777776522 12222212224689999999995 777777777 244689999987 6789999
Q ss_pred HHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccccCC--hhhHHHHHHHHHhhcccCeEEE
Q 041205 175 RIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAGN--EEEKAKILGHIRKYMKEGGVLL 237 (535)
Q Consensus 175 ~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALVgm--~edK~~VL~eL~rvLKPGGvLV 237 (535)
++++... +.+||+++.|-+.++..+ ...|+++..-.=-| .+..-+-+-+.++.|+|.|.+.
T Consensus 217 ~Lv~~N~-~~~rItVI~GKiEdieLP-Ek~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 217 KLVASNN-LADRITVIPGKIEDIELP-EKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred HHHhcCC-ccceEEEccCccccccCc-hhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 9999887 899999999999875433 46899987633223 3444555567789999999763
No 214
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.71 E-value=0.00012 Score=72.86 Aligned_cols=105 Identities=19% Similarity=0.304 Sum_probs=75.6
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA 210 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia 210 (535)
...+.||.|+|-+=.|--+|.+ ++ -+|+-||..+..++.|++.+...+ ....++.+.-..++.+..+.||+||+.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~-~f--~~VDlVEp~~~Fl~~a~~~l~~~~--~~v~~~~~~gLQ~f~P~~~~YDlIW~Q 129 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLP-VF--DEVDLVEPVEKFLEQAKEYLGKDN--PRVGEFYCVGLQDFTPEEGKYDLIWIQ 129 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCC-C---SEEEEEES-HHHHHHHHHHTCCGG--CCEEEEEES-GGG----TT-EEEEEEE
T ss_pred CcceEEecccccchhHHHHHHH-hc--CEeEEeccCHHHHHHHHHHhcccC--CCcceEEecCHhhccCCCCcEeEEEeh
Confidence 4689999999966566556655 33 689999999999999998776632 234577777777766555679999998
Q ss_pred cccC-C-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 211 ALAG-N-EEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 211 ALVg-m-~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
-.++ + -++-.++|..+...|+|||+|++..
T Consensus 130 W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 130 WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 6664 4 7899999999999999999999977
No 215
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.70 E-value=0.00057 Score=66.71 Aligned_cols=125 Identities=17% Similarity=0.200 Sum_probs=89.8
Q ss_pred hhHHhHHHHHHHHHHhhCC--CCCCEEEEE--ccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCC
Q 041205 111 NYVKLAKLEYGALIENTGV--AQLKKVAFV--GSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKR 186 (535)
Q Consensus 111 NYv~LirlE~~lL~~~~~l--~~pkRVLeI--GSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~r 186 (535)
.+.+.+..=.+.+...+.- -.+.++||+ |||++|+=| +.+ ....++-||.|.+++...+++++.+| +..+
T Consensus 21 ~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEA--lSR---GA~~~~~vE~~~~a~~~l~~N~~~l~-~~~~ 94 (187)
T COG0742 21 GTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEA--LSR---GAARVVFVEKDRKAVKILKENLKALG-LEGE 94 (187)
T ss_pred CcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHH--HhC---CCceEEEEecCHHHHHHHHHHHHHhC-Cccc
Confidence 4555665555555554432 578999987 666555554 334 34689999999999999999999999 7889
Q ss_pred eEEEEccccccccCC-C--CcceEEeccccCC-hhhHHHHHHH--HHhhcccCeEEEEEcc
Q 041205 187 MKFLTCDIMEVKEKL-G--EYDCIILAALAGN-EEEKAKILGH--IRKYMKEGGVLLVRSA 241 (535)
Q Consensus 187 I~Fi~GDA~el~~dL-~--~FDvVfiaALVgm-~edK~~VL~e--L~rvLKPGGvLVvRsa 241 (535)
.+++.+|+...+... . .||+||+|--.+. .-++...+.. -...|+|||.+++...
T Consensus 95 ~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 95 ARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred eEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 999999998654433 2 3999999955532 2344444444 4567999999999765
No 216
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.69 E-value=0.00019 Score=73.40 Aligned_cols=107 Identities=17% Similarity=0.330 Sum_probs=66.4
Q ss_pred CCCEEEEEccCCChhhHHH--HHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc---------
Q 041205 131 QLKKVAFVGSGPMPLTSII--LASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE--------- 199 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~--LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~--------- 199 (535)
.=++.|||||| +|...-. +|++..|+++|+-||+||-++..||.++.... ..+..++++|+.+...
T Consensus 68 GIrQFLDlGsG-lPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~--~g~t~~v~aD~r~p~~iL~~p~~~~ 144 (267)
T PF04672_consen 68 GIRQFLDLGSG-LPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP--RGRTAYVQADLRDPEAILAHPEVRG 144 (267)
T ss_dssp ---EEEEET---S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T--TSEEEEEE--TT-HHHHHCSHHHHC
T ss_pred CcceEEEcccC-CCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC--CccEEEEeCCCCCHHHHhcCHHHHh
Confidence 45899999999 8865443 35555799999999999999999999987654 1358999999976321
Q ss_pred --CCCCcceEEeccccCC---hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 200 --KLGEYDCIILAALAGN---EEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 200 --dL~~FDvVfiaALVgm---~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+++.-=.|++.+.+|+ .++...++..++..|.||..|++..
T Consensus 145 ~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 145 LLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp C--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred cCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence 2222113444444443 4689999999999999999999865
No 217
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.67 E-value=0.00049 Score=73.45 Aligned_cols=148 Identities=14% Similarity=0.191 Sum_probs=102.3
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCC-CcEEEEEeCChhHHHHHH--HHHhhcC--C-cCCCeEEEEccccccccCCC-
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMK-STHFDNIDIDETANNLAR--RIVSSDD--E-IEKRMKFLTCDIMEVKEKLG- 202 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~-Ga~VtGIDIDpeAIelAR--~li~~lG--~-Ls~rI~Fi~GDA~el~~dL~- 202 (535)
+...+||-+|.| =|+.+.-+-+ +| -.+|+-||.||+|++.|+ ...++.. . .+.|++++..|+..+...-+
T Consensus 288 ~~a~~vLvlGGG-DGLAlRellk--yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~ 364 (508)
T COG4262 288 RGARSVLVLGGG-DGLALRELLK--YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAAD 364 (508)
T ss_pred cccceEEEEcCC-chHHHHHHHh--CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcc
Confidence 567899999999 5999998877 67 578999999999999999 4455432 1 24699999999998876554
Q ss_pred CcceEEeccccC----C-hhhHHHHHHHHHhhcccCeEEEEEccccccc-ccCCCCcc--ccCCcEEEE-EEc-CCCcce
Q 041205 203 EYDCIILAALAG----N-EEEKAKILGHIRKYMKEGGVLLVRSAKGARA-FLYPVVEH--ELFDFKVLS-IFH-PTNDVI 272 (535)
Q Consensus 203 ~FDvVfiaALVg----m-~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~-fLYP~Vdp--dl~GFeil~-v~h-P~~eVI 272 (535)
.||+|++|---. + .---.+++.-+.++++++|++++......-. --|..++. .-+||.+.- ..| |+=.-.
T Consensus 365 ~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGeW 444 (508)
T COG4262 365 MFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGEW 444 (508)
T ss_pred cccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeEEecCccccc
Confidence 499999983321 2 2234678889999999999999976543110 11111222 237887642 333 653222
Q ss_pred eeeEEEecC
Q 041205 273 NSVVLLQLP 281 (535)
Q Consensus 273 NSVVvARK~ 281 (535)
.++++++.
T Consensus 445 -Gf~l~~~~ 452 (508)
T COG4262 445 -GFILAAPG 452 (508)
T ss_pred -ceeecccc
Confidence 27888875
No 218
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.62 E-value=0.00025 Score=78.11 Aligned_cols=102 Identities=24% Similarity=0.259 Sum_probs=73.2
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccc-----------ccc
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDI-----------MEV 197 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA-----------~el 197 (535)
..++++|+-+|+|++|+.++..|+. -|+.|+.+|.+++..+.++++ |. +|+.-|. .+.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~--lGA~V~a~D~~~~rle~aesl----GA-----~~v~i~~~e~~~~~~gya~~~ 230 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGS--LGAIVRAFDTRPEVAEQVESM----GA-----EFLELDFEEEGGSGDGYAKVM 230 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHc----CC-----eEEEeccccccccccchhhhc
Confidence 4689999999999999999999994 578999999999999888864 51 1211111 011
Q ss_pred cc------------CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 198 KE------------KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 198 ~~------------dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
.. ...++|+|+..+...-.+.+.-+.++..+.|||||+++.-..
T Consensus 231 s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 231 SEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred chhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 11 124699999887762111233446999999999999887664
No 219
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=97.61 E-value=0.00023 Score=73.93 Aligned_cols=102 Identities=23% Similarity=0.231 Sum_probs=73.5
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc-cccc-cccCC--CCcc
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC-DIME-VKEKL--GEYD 205 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G-DA~e-l~~dL--~~FD 205 (535)
.++.+|+-+|+||+|+-++.+|+ .+..++|+.+|++++.+++|++.....- +..... ++.. ..... ..||
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~-~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~-----~~~~~~~~~~~~~~~~t~g~g~D 240 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAK-LLGASVVIVVDRSPERLELAKEAGGADV-----VVNPSEDDAGAEILELTGGRGAD 240 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-HcCCceEEEeCCCHHHHHHHHHhCCCeE-----eecCccccHHHHHHHHhCCCCCC
Confidence 45559999999999999999998 4666899999999999999998643321 111111 2211 11111 2599
Q ss_pred eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205 206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKG 243 (535)
Q Consensus 206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~G 243 (535)
+||-++.. ...+..+.+.++|||.+++-...+
T Consensus 241 ~vie~~G~------~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 241 VVIEAVGS------PPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred EEEECCCC------HHHHHHHHHHhcCCCEEEEEeccC
Confidence 99987554 448889999999999999876543
No 220
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00029 Score=71.72 Aligned_cols=83 Identities=13% Similarity=0.207 Sum_probs=62.1
Q ss_pred HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205 120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE 199 (535)
Q Consensus 120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~ 199 (535)
...+.....+.+++.|+|||+|.+.+|..++ + .+.+|++||+|+..++.=++.+.. .++++++.||+..+..
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll-~---~~~~v~aiEiD~~l~~~L~~~~~~----~~n~~vi~~DaLk~d~ 90 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLL-E---RAARVTAIEIDRRLAEVLKERFAP----YDNLTVINGDALKFDF 90 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHH-h---hcCeEEEEEeCHHHHHHHHHhccc----ccceEEEeCchhcCcc
Confidence 3344444556778999999999988887666 4 468899999999999888877663 2589999999976544
Q ss_pred CCC-CcceEEec
Q 041205 200 KLG-EYDCIILA 210 (535)
Q Consensus 200 dL~-~FDvVfia 210 (535)
+.- .++.|+..
T Consensus 91 ~~l~~~~~vVaN 102 (259)
T COG0030 91 PSLAQPYKVVAN 102 (259)
T ss_pred hhhcCCCEEEEc
Confidence 311 56777754
No 221
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.57 E-value=0.00047 Score=72.53 Aligned_cols=109 Identities=20% Similarity=0.168 Sum_probs=77.2
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCC----CeEEEEcccccc-----ccC
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEK----RMKFLTCDIMEV-----KEK 200 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~----rI~Fi~GDA~el-----~~d 200 (535)
.+++.|+++|||-+|=- +-.-+ ..-..++||||.+..|+.|++..+..-...+ ...|++||.... ...
T Consensus 116 ~~~~~~~~LgCGKGGDL-lKw~k--AgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDL-LKWDK--AGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred ccccccceeccCCcccH-hHhhh--hcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 57899999999975544 44434 2347899999999999999998765321112 468999998632 112
Q ss_pred CCC-cceEEeccccCC---h-hhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 201 LGE-YDCIILAALAGN---E-EEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 201 L~~-FDvVfiaALVgm---~-edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
.+. ||+|=+....|. . +.-...|.++.+.|+|||++|.--+
T Consensus 193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 233 999986644442 3 4445568999999999999998665
No 222
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.52 E-value=0.00031 Score=72.81 Aligned_cols=76 Identities=17% Similarity=0.223 Sum_probs=50.3
Q ss_pred CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc-CCcCCCeEEEEccccc-cccCC----CCcc
Q 041205 132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD-DEIEKRMKFLTCDIME-VKEKL----GEYD 205 (535)
Q Consensus 132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l-G~Ls~rI~Fi~GDA~e-l~~dL----~~FD 205 (535)
.-++||||||+-.+=.|+-++. .|++|+|.|||+.+++.|++++++- + |.++|+++...-.. +...+ ..||
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~--~~W~fvaTdID~~sl~~A~~nv~~N~~-L~~~I~l~~~~~~~~i~~~i~~~~e~~d 179 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKL--YGWSFVATDIDPKSLESARENVERNPN-LESRIELRKQKNPDNIFDGIIQPNERFD 179 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHH--H--EEEEEES-HHHHHHHHHHHHHT-T--TTTEEEEE--ST-SSTTTSTT--S-EE
T ss_pred ceEeecCCccHHHHHHHHhhhh--cCCeEEEecCCHHHHHHHHHHHHhccc-cccceEEEEcCCccccchhhhcccceee
Confidence 5799999999977767777763 4999999999999999999999998 7 89999998664321 11111 2477
Q ss_pred eEEec
Q 041205 206 CIILA 210 (535)
Q Consensus 206 vVfia 210 (535)
+.+..
T Consensus 180 ftmCN 184 (299)
T PF05971_consen 180 FTMCN 184 (299)
T ss_dssp EEEE-
T ss_pred EEecC
Confidence 77654
No 223
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.52 E-value=0.00068 Score=68.70 Aligned_cols=105 Identities=15% Similarity=0.184 Sum_probs=70.0
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCC-CcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMK-STHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII 208 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~-Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf 208 (535)
-.|++|||+|||| .|++|.+....+ -.++++||.|+.++++|+.+++.... .....+. .+...-..+....|+|+
T Consensus 32 f~P~~vLD~GsGp--Gta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~-~~~~~~~-~~~~~~~~~~~~~DLvi 107 (274)
T PF09243_consen 32 FRPRSVLDFGSGP--GTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN-NRNAEWR-RVLYRDFLPFPPDDLVI 107 (274)
T ss_pred CCCceEEEecCCh--HHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc-cccchhh-hhhhcccccCCCCcEEE
Confidence 4689999999996 377777765544 35799999999999999999887542 1222111 11111112233459999
Q ss_pred eccccC-C-hhhHHHHHHHHHhhcccCeEEEEE
Q 041205 209 LAALAG-N-EEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 209 iaALVg-m-~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
++..+. + ...+..+++.++..+.+ -+|++-
T Consensus 108 ~s~~L~EL~~~~r~~lv~~LW~~~~~-~LVlVE 139 (274)
T PF09243_consen 108 ASYVLNELPSAARAELVRSLWNKTAP-VLVLVE 139 (274)
T ss_pred EehhhhcCCchHHHHHHHHHHHhccC-cEEEEc
Confidence 886663 3 56778888888887766 444443
No 224
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=97.48 E-value=0.0013 Score=65.67 Aligned_cols=109 Identities=19% Similarity=0.179 Sum_probs=83.4
Q ss_pred CCCCCCEEEEEccCCCh-hhHHHHHhh-cCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccc-cccccCCCCc
Q 041205 128 GVAQLKKVAFVGSGPMP-LTSIILASQ-HMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDI-MEVKEKLGEY 204 (535)
Q Consensus 128 ~l~~pkRVLeIGSGplP-lTAI~LAk~-~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA-~el~~dL~~F 204 (535)
.....+.|+++.|+..+ .|+|-||-. +.+|+++++|-.|++.....++.+..+| +.+-++|+.||. .++...+.+.
T Consensus 38 AG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~-~~~~vEfvvg~~~e~~~~~~~~i 116 (218)
T PF07279_consen 38 AGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG-LSDVVEFVVGEAPEEVMPGLKGI 116 (218)
T ss_pred ccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc-ccccceEEecCCHHHHHhhccCC
Confidence 34678999999775323 245555432 3689999999999999999999999989 777889999985 4577788899
Q ss_pred ceEEeccccCChhhHH-HHHHHHHhhcccCeEEEEEcc
Q 041205 205 DCIILAALAGNEEEKA-KILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 205 DvVfiaALVgm~edK~-~VL~eL~rvLKPGGvLVvRsa 241 (535)
|++++|+-. ++.. ++|+.+ +.=+.|++|+.+|+
T Consensus 117 DF~vVDc~~---~d~~~~vl~~~-~~~~~GaVVV~~Na 150 (218)
T PF07279_consen 117 DFVVVDCKR---EDFAARVLRAA-KLSPRGAVVVCYNA 150 (218)
T ss_pred CEEEEeCCc---hhHHHHHHHHh-ccCCCceEEEEecc
Confidence 999999876 6777 777754 43456777777775
No 225
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.42 E-value=0.00085 Score=66.46 Aligned_cols=101 Identities=15% Similarity=0.216 Sum_probs=79.4
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
...+.+.|+|.|++++| ++-|+ ..-+|++|+.||...+.|.+++.--|+ .+++++.|||.+..+ ..-|+|++
T Consensus 31 va~d~~~DLGaGsGiLs-~~Aa~---~A~rViAiE~dPk~a~~a~eN~~v~g~--~n~evv~gDA~~y~f--e~ADvvic 102 (252)
T COG4076 31 VAEDTFADLGAGSGILS-VVAAH---AAERVIAIEKDPKRARLAEENLHVPGD--VNWEVVVGDARDYDF--ENADVVIC 102 (252)
T ss_pred HhhhceeeccCCcchHH-HHHHh---hhceEEEEecCcHHHHHhhhcCCCCCC--cceEEEecccccccc--cccceeHH
Confidence 34589999999976555 44545 257899999999999999999988884 799999999986554 56799886
Q ss_pred ccccC-C-hhhHHHHHHHHHhhcccCeEEEE
Q 041205 210 AALAG-N-EEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 210 aALVg-m-~edK~~VL~eL~rvLKPGGvLVv 238 (535)
.-+-. + .+.-..+++.+.+.||-++.++=
T Consensus 103 EmlDTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 103 EMLDTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HHhhHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 52221 2 46678899999999999998875
No 226
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.41 E-value=0.0019 Score=67.45 Aligned_cols=165 Identities=16% Similarity=0.195 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHhh-----CCCCCCEEEEEccCCChhhHHHHHhhc--CCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCe
Q 041205 115 LAKLEYGALIENT-----GVAQLKKVAFVGSGPMPLTSIILASQH--MKSTHFDNIDIDETANNLARRIVSSDDEIEKRM 187 (535)
Q Consensus 115 LirlE~~lL~~~~-----~l~~pkRVLeIGSGplPlTAI~LAk~~--l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI 187 (535)
.++.|...|..+. .+.++..|+|+|||.+-=|.++|..-. ....+.++||||.++++.+.+.+.... + ..+
T Consensus 55 ptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~-~-p~l 132 (319)
T TIGR03439 55 LTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN-F-SHV 132 (319)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc-C-CCe
Confidence 4567766666544 245777999999998777777775411 135789999999999999999887222 2 235
Q ss_pred EE--EEcccccccc---C--C-CCcceEE-eccccCC--hhhHHHHHHHHHh-hcccCeEEEEEc---------------
Q 041205 188 KF--LTCDIMEVKE---K--L-GEYDCII-LAALAGN--EEEKAKILGHIRK-YMKEGGVLLVRS--------------- 240 (535)
Q Consensus 188 ~F--i~GDA~el~~---d--L-~~FDvVf-iaALVgm--~edK~~VL~eL~r-vLKPGGvLVvRs--------------- 240 (535)
++ ++||-.+... . . ....+|| .-+.+|- .++-..+|..+++ .|+||+.|++--
T Consensus 133 ~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d 212 (319)
T TIGR03439 133 RCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYND 212 (319)
T ss_pred EEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcC
Confidence 55 7887655322 1 1 2356666 4456764 7788899999999 999999888821
Q ss_pred cccc-ccccCCC-------C--c-cccCCcEEEEEEcCCCcceeeeEEEecC
Q 041205 241 AKGA-RAFLYPV-------V--E-HELFDFKVLSIFHPTNDVINSVVLLQLP 281 (535)
Q Consensus 241 a~Gl-R~fLYP~-------V--d-pdl~GFeil~v~hP~~eVINSVVvARK~ 281 (535)
+.|. +.|+--. . + ++...|+-...++|...-+...+++++.
T Consensus 213 ~~gvTa~FnlN~L~~~Nr~Lg~~~Fd~~~f~h~a~~n~~~~rie~~l~s~~~ 264 (319)
T TIGR03439 213 PGGVTRRFVLNGLVHANEILGSEAFREEDWEFLGEWDEELGRHEAFYIPKKD 264 (319)
T ss_pred CcchhHHHHHHHHHHHHHHhCccccCHHHcEEEEEEcCCCCeEEEEEEeCCc
Confidence 1121 1111000 0 0 1235677777777776667778877764
No 227
>PRK10742 putative methyltransferase; Provisional
Probab=97.40 E-value=0.00066 Score=68.88 Aligned_cols=89 Identities=11% Similarity=0.195 Sum_probs=73.7
Q ss_pred HHHHHhhCCCCCC--EEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc------CC-cCCCeEEEE
Q 041205 121 GALIENTGVAQLK--KVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD------DE-IEKRMKFLT 191 (535)
Q Consensus 121 ~lL~~~~~l~~pk--RVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l------G~-Ls~rI~Fi~ 191 (535)
+.+.+.++++++. +|||.=+| +|-=++.+|. .|+.|+.||.++.+..+-+..++++ +. +..+|++++
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAG-lG~Da~~las---~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAG-LGRDAFVLAS---VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCC-ccHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 5677777788888 99999999 6888888988 5899999999999999999998885 42 236899999
Q ss_pred ccccccccCCC-CcceEEecccc
Q 041205 192 CDIMEVKEKLG-EYDCIILAALA 213 (535)
Q Consensus 192 GDA~el~~dL~-~FDvVfiaALV 213 (535)
+|+.+++.... .||+||+|-..
T Consensus 152 ~da~~~L~~~~~~fDVVYlDPMf 174 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYLDPMF 174 (250)
T ss_pred CcHHHHHhhCCCCCcEEEECCCC
Confidence 99988776543 59999999555
No 228
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=97.39 E-value=0.00059 Score=69.23 Aligned_cols=99 Identities=17% Similarity=0.163 Sum_probs=68.3
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI 207 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV 207 (535)
..++++||-+|+|++|+.++.+|+. .|+ +|+++|.+++..+.+++ +| ...-+.....|..+.....+.||+|
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~--~G~~~Vi~~~~~~~~~~~a~~----lG-a~~vi~~~~~~~~~~~~~~g~~D~v 239 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKT--LGAAEIVCADVSPRSLSLARE----MG-ADKLVNPQNDDLDHYKAEKGYFDVS 239 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEEeCCHHHHHHHHH----cC-CcEEecCCcccHHHHhccCCCCCEE
Confidence 3578999999999999999999993 466 69999999999888775 45 2111111112222222222359999
Q ss_pred EeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
|-.... ...+....+.|++||++++-.
T Consensus 240 id~~G~------~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 240 FEVSGH------PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred EECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 864322 346778888999999998754
No 229
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.39 E-value=0.0022 Score=64.21 Aligned_cols=138 Identities=20% Similarity=0.237 Sum_probs=101.8
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
..+.+|+||||- -+|=++.+-+. -+..++++.|+++..++.|.+++.+.+ +.++|+..+||+.......+.+|+|.+
T Consensus 15 ~~~~~iaDIGsD-HAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~-l~~~i~vr~~dgl~~l~~~d~~d~ivI 91 (226)
T COG2384 15 KQGARIADIGSD-HAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNN-LSERIDVRLGDGLAVLELEDEIDVIVI 91 (226)
T ss_pred HcCCceeeccCc-hhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcC-CcceEEEeccCCccccCccCCcCEEEE
Confidence 466779999997 57877777774 456789999999999999999999999 789999999999776655557999999
Q ss_pred ccccCChhhHHHHHHHHHhhcccCeEEEEEcccccccccCCCCcc-cc------CCcEEEE-EEcCCCcceeeeEEEecC
Q 041205 210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEH-EL------FDFKVLS-IFHPTNDVINSVVLLQLP 281 (535)
Q Consensus 210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdp-dl------~GFeil~-v~hP~~eVINSVVvARK~ 281 (535)
+.+=| .--.++|++-...++-= -|.+|-|+..+ ++ .+|++.. ..-+.+.-+--++++.++
T Consensus 92 AGMGG--~lI~~ILee~~~~l~~~----------~rlILQPn~~~~~LR~~L~~~~~~I~~E~ileE~~kiYEIlv~e~~ 159 (226)
T COG2384 92 AGMGG--TLIREILEEGKEKLKGV----------ERLILQPNIHTYELREWLSANSYEIKAETILEEDGKIYEILVVEKS 159 (226)
T ss_pred eCCcH--HHHHHHHHHhhhhhcCc----------ceEEECCCCCHHHHHHHHHhCCceeeeeeeecccCeEEEEEEEecC
Confidence 84433 44566777666665421 12356676655 22 6898865 444555555568888886
Q ss_pred C
Q 041205 282 K 282 (535)
Q Consensus 282 ~ 282 (535)
.
T Consensus 160 ~ 160 (226)
T COG2384 160 S 160 (226)
T ss_pred C
Confidence 4
No 230
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.39 E-value=0.00055 Score=60.68 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=50.5
Q ss_pred EEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc
Q 041205 134 KVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME 196 (535)
Q Consensus 134 RVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e 196 (535)
.|+||||| .|+.++++++ ..++++|+++|.++++.+.++++++..| + .++++++..+.+
T Consensus 1 ~vlDiGa~-~G~~~~~~~~-~~~~~~v~~~E~~~~~~~~l~~~~~~n~-~-~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGAN-IGDTSLYFAR-KGAEGRVIAFEPLPDAYEILEENVKLNN-L-PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCC-ccHHHHHHHH-hCCCCEEEEEecCHHHHHHHHHHHHHcC-C-CcEEEEEeeeeC
Confidence 38999999 5888899988 5677899999999999999999999888 5 469998887653
No 231
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.0042 Score=61.55 Aligned_cols=135 Identities=19% Similarity=0.188 Sum_probs=87.2
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc------cCCC
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK------EKLG 202 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~------~dL~ 202 (535)
+.++++|+|+|+-|+|.|=+ .++...++..|++||+.|-. .-.++.|+++|.++-. ..++
T Consensus 43 ~~~~~~ViDLGAAPGgWsQv-a~~~~~~~~~ivavDi~p~~-------------~~~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQV-AAKKLGAGGKIVAVDILPMK-------------PIPGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHH-HHHHhCCCCcEEEEECcccc-------------cCCCceEEeeeccCccHHHHHHHHcC
Confidence 47899999999999888754 44545566779999999743 1245899999987522 1223
Q ss_pred --CcceEEecccc---CC--------hhhHHHHHHHHHhhcccCeEEEEEcccccccccCCCCccc-cCCcEEEEEEcCC
Q 041205 203 --EYDCIILAALA---GN--------EEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEHE-LFDFKVLSIFHPT 268 (535)
Q Consensus 203 --~FDvVfiaALV---gm--------~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdpd-l~GFeil~v~hP~ 268 (535)
.+|+|+.|..- |. ..-....++-...+|+|||.+++....|--. ..+-.. ...|+.+....|.
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~---~~~l~~~~~~F~~v~~~KP~ 185 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDF---EDLLKALRRLFRKVKIFKPK 185 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCH---HHHHHHHHHhhceeEEecCc
Confidence 37999966432 21 2334455566677999999999988766200 000001 2578888888886
Q ss_pred Ccceee---eEEEec
Q 041205 269 NDVINS---VVLLQL 280 (535)
Q Consensus 269 ~eVINS---VVvARK 280 (535)
...-+| +++++.
T Consensus 186 aSR~~S~E~y~v~~~ 200 (205)
T COG0293 186 ASRKRSREIYLVAKG 200 (205)
T ss_pred cccCCCceEEEEEec
Confidence 644333 555554
No 232
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.32 E-value=0.0022 Score=62.43 Aligned_cols=106 Identities=15% Similarity=0.187 Sum_probs=81.5
Q ss_pred CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-----C
Q 041205 128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-----G 202 (535)
Q Consensus 128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-----~ 202 (535)
....+.-|||+|-|++.+|--.|++ ..+...++.||.|++.+..=.+.. . .+.|++||+.++...+ .
T Consensus 45 ~pesglpVlElGPGTGV~TkaIL~~-gv~~~~L~~iE~~~dF~~~L~~~~---p----~~~ii~gda~~l~~~l~e~~gq 116 (194)
T COG3963 45 DPESGLPVLELGPGTGVITKAILSR-GVRPESLTAIEYSPDFVCHLNQLY---P----GVNIINGDAFDLRTTLGEHKGQ 116 (194)
T ss_pred CcccCCeeEEEcCCccHhHHHHHhc-CCCccceEEEEeCHHHHHHHHHhC---C----CccccccchhhHHHHHhhcCCC
Confidence 3377889999999999999999977 467789999999999876554442 2 3568999998765222 2
Q ss_pred CcceEEecccc-CC-hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 203 EYDCIILAALA-GN-EEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 203 ~FDvVfiaALV-gm-~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
.||.|+..--+ .. ..-..++++.+...+++||.++--++
T Consensus 117 ~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftY 157 (194)
T COG3963 117 FFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTY 157 (194)
T ss_pred eeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 39999975333 22 46778999999999999999887554
No 233
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.30 E-value=0.0036 Score=56.99 Aligned_cols=66 Identities=26% Similarity=0.268 Sum_probs=55.4
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhc---CCCcEEEEEeCChhHHHHHHHHHhhcCC-cCCCeEEEEccccc
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQH---MKSTHFDNIDIDETANNLARRIVSSDDE-IEKRMKFLTCDIME 196 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~---l~Ga~VtGIDIDpeAIelAR~li~~lG~-Ls~rI~Fi~GDA~e 196 (535)
.++.+|+|+||| -|+-+..+|..+ .++.+|+|||.++..++.|.+..++.+. +..++.|..++..+
T Consensus 24 ~~~~~vvD~GsG-~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 93 (141)
T PF13679_consen 24 KRCITVVDLGSG-KGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD 93 (141)
T ss_pred CCCCEEEEeCCC-hhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence 678999999999 799999997711 3789999999999999999999998873 34678888887654
No 234
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.25 E-value=0.0013 Score=69.68 Aligned_cols=88 Identities=14% Similarity=0.269 Sum_probs=67.0
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII 208 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf 208 (535)
+.++++++||||+|+|+|-.++ + .|++|++||..+ .+..+ ... .+|++..+|+.......+.+|.|+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~-~---rG~~V~AVD~g~----l~~~L-~~~----~~V~h~~~d~fr~~p~~~~vDwvV 275 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLV-R---RGMFVTAVDNGP----MAQSL-MDT----GQVEHLRADGFKFRPPRKNVDWLV 275 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHH-H---cCCEEEEEechh----cCHhh-hCC----CCEEEEeccCcccCCCCCCCCEEE
Confidence 3689999999999999996544 5 478999999654 22222 222 479999999987654456799999
Q ss_pred eccccCChhhHHHHHHHHHhhcccC
Q 041205 209 LAALAGNEEEKAKILGHIRKYMKEG 233 (535)
Q Consensus 209 iaALVgm~edK~~VL~eL~rvLKPG 233 (535)
.| .+ +.+.++++-+.+.+..|
T Consensus 276 cD-mv---e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 276 CD-MV---EKPARVAELMAQWLVNG 296 (357)
T ss_pred Ee-cc---cCHHHHHHHHHHHHhcC
Confidence 98 33 47789999999988777
No 235
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.22 E-value=0.00063 Score=75.08 Aligned_cols=98 Identities=22% Similarity=0.259 Sum_probs=70.3
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccc-----------cc--
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDI-----------ME-- 196 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA-----------~e-- 196 (535)
.++.+|+-+|+|+.|+.++.+|+. -|+.|+.+|.+++..+.++++ | . +++.-|. .+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~--lGA~V~v~d~~~~rle~a~~l----G-a----~~v~v~~~e~g~~~~gYa~~~s 230 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANS--LGAIVRAFDTRPEVKEQVQSM----G-A----EFLELDFKEEGGSGDGYAKVMS 230 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHc----C-C----eEEeccccccccccccceeecC
Confidence 578999999999999999999994 578999999999988777753 4 1 1211111 00
Q ss_pred ----------cccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205 197 ----------VKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 197 ----------l~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVv 238 (535)
+.....++|+||..+++.-.+.+.-+.++..+.||||++++=
T Consensus 231 ~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 231 EEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 122245799999888773212223488889999999998763
No 236
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.18 E-value=0.002 Score=65.96 Aligned_cols=95 Identities=19% Similarity=0.227 Sum_probs=69.4
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA 210 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia 210 (535)
...++||||.|-++.|. .||. ++ .+|++.|.|+.|. ...++-| ++++ |+.++......||+|-+-
T Consensus 94 ~~~~lLDlGAGdG~VT~-~l~~-~f--~~v~aTE~S~~Mr----~rL~~kg-----~~vl--~~~~w~~~~~~fDvIscL 158 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTE-RLAP-LF--KEVYATEASPPMR----WRLSKKG-----FTVL--DIDDWQQTDFKFDVISCL 158 (265)
T ss_pred cCCceEEecCCCcHHHH-HHHh-hc--ceEEeecCCHHHH----HHHHhCC-----CeEE--ehhhhhccCCceEEEeeh
Confidence 57899999999866665 5677 45 5699999999993 3344556 2333 333344333469999988
Q ss_pred cccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 211 ALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 211 ALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
++..--..+..+|+++++.|+|+|++++--
T Consensus 159 NvLDRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 159 NVLDRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred hhhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 777324678999999999999999998843
No 237
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.17 E-value=0.002 Score=66.65 Aligned_cols=82 Identities=18% Similarity=0.268 Sum_probs=66.1
Q ss_pred HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205 121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK 200 (535)
Q Consensus 121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d 200 (535)
+.+..-..+.+++.|||||-||+-+|--+| + .|.+|+++|+|+.+++.=.+.++-.. .+...+++.||... .+
T Consensus 48 ~~I~~ka~~k~tD~VLEvGPGTGnLT~~lL-e---~~kkVvA~E~Dprmvael~krv~gtp-~~~kLqV~~gD~lK--~d 120 (315)
T KOG0820|consen 48 DQIVEKADLKPTDVVLEVGPGTGNLTVKLL-E---AGKKVVAVEIDPRMVAELEKRVQGTP-KSGKLQVLHGDFLK--TD 120 (315)
T ss_pred HHHHhccCCCCCCEEEEeCCCCCHHHHHHH-H---hcCeEEEEecCcHHHHHHHHHhcCCC-ccceeeEEeccccc--CC
Confidence 333333467999999999999988887666 4 58999999999999998888887776 67899999999964 34
Q ss_pred CCCcceEEe
Q 041205 201 LGEYDCIIL 209 (535)
Q Consensus 201 L~~FDvVfi 209 (535)
+..||.++.
T Consensus 121 ~P~fd~cVs 129 (315)
T KOG0820|consen 121 LPRFDGCVS 129 (315)
T ss_pred Ccccceeec
Confidence 456898886
No 238
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.14 E-value=0.0038 Score=62.99 Aligned_cols=116 Identities=18% Similarity=0.182 Sum_probs=85.4
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC--CCcceE
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL--GEYDCI 207 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL--~~FDvV 207 (535)
+++.|||.||=| +|+..-.+.+ ..| .+=+-|+..|+...+-|.-.-. -.++|-+..|--.++...+ +.||-|
T Consensus 100 tkggrvLnVGFG-MgIidT~iQe-~~p-~~H~IiE~hp~V~krmr~~gw~---ek~nViil~g~WeDvl~~L~d~~FDGI 173 (271)
T KOG1709|consen 100 TKGGRVLNVGFG-MGIIDTFIQE-APP-DEHWIIEAHPDVLKRMRDWGWR---EKENVIILEGRWEDVLNTLPDKHFDGI 173 (271)
T ss_pred hCCceEEEeccc-hHHHHHHHhh-cCC-cceEEEecCHHHHHHHHhcccc---cccceEEEecchHhhhccccccCccee
Confidence 678999999999 8888877755 334 4445699999998776654222 1357888888766666544 459999
Q ss_pred EeccccCChhhHHHHHHHHHhhcccCeEEEEEccccccc-ccCCC
Q 041205 208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARA-FLYPV 251 (535)
Q Consensus 208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~-fLYP~ 251 (535)
|.+..-..-++-..+.+++.+.|||||++.+-+.-|... +.|-+
T Consensus 174 ~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~~~~~~~~~v 218 (271)
T KOG1709|consen 174 YYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLGADNLMFYDV 218 (271)
T ss_pred EeechhhHHHHHHHHHHHHhhhcCCCceEEEecCcccchhhhhhh
Confidence 998664334777888999999999999999988755443 55554
No 239
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.13 E-value=0.0021 Score=69.38 Aligned_cols=110 Identities=13% Similarity=0.101 Sum_probs=75.4
Q ss_pred chhhHHhHHHHHHHHHHhhC-CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCe
Q 041205 109 YENYVKLAKLEYGALIENTG-VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRM 187 (535)
Q Consensus 109 y~NYv~LirlE~~lL~~~~~-l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI 187 (535)
|+|-.-+-+.-+..+.+..+ ..++++|+-+|+|++|......++ ..|++|+.+|+|+...+.|+. .| .
T Consensus 178 ~dn~~g~g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak--~~Ga~ViV~d~d~~R~~~A~~----~G-~---- 246 (413)
T cd00401 178 FDNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLR--GQGARVIVTEVDPICALQAAM----EG-Y---- 246 (413)
T ss_pred ccccchhchhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEECChhhHHHHHh----cC-C----
Confidence 35544444444566666543 257999999999999999998888 368899999999998877764 46 2
Q ss_pred EEEEccccccccCCCCcceEEeccccCChhhHHHHHHH-HHhhcccCeEEEEEc
Q 041205 188 KFLTCDIMEVKEKLGEYDCIILAALAGNEEEKAKILGH-IRKYMKEGGVLLVRS 240 (535)
Q Consensus 188 ~Fi~GDA~el~~dL~~FDvVfiaALVgm~edK~~VL~e-L~rvLKPGGvLVvRs 240 (535)
+.. +..+ ....+|+||.+... ..++.. ..+.|++||+++.-.
T Consensus 247 ~~~--~~~e---~v~~aDVVI~atG~------~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 247 EVM--TMEE---AVKEGDIFVTTTGN------KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred EEc--cHHH---HHcCCCEEEECCCC------HHHHHHHHHhcCCCCcEEEEeC
Confidence 111 1112 12468999975432 335554 488999999997753
No 240
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.13 E-value=0.0033 Score=63.49 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=72.7
Q ss_pred CCCCCCEEEEEccCCChhhHHHHHhhc------CCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC-
Q 041205 128 GVAQLKKVAFVGSGPMPLTSIILASQH------MKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK- 200 (535)
Q Consensus 128 ~l~~pkRVLeIGSGplPlTAI~LAk~~------l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d- 200 (535)
...++.+|+|-.||++++-.-.+ ++. .....++|+|+|+.++.+|+-++.-.|.-.....+.++|.......
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~-~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~ 121 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAM-EYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI 121 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHH-HHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT
T ss_pred hccccceeechhhhHHHHHHHHH-HhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc
Confidence 44678899999999876654333 211 2678999999999999999977654452113356889998654433
Q ss_pred -CCCcceEEeccccCCh---------------------hhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205 201 -LGEYDCIILAALAGNE---------------------EEKAKILGHIRKYMKEGGVLLVRSAKG 243 (535)
Q Consensus 201 -L~~FDvVfiaALVgm~---------------------edK~~VL~eL~rvLKPGGvLVvRsa~G 243 (535)
...||+|+..--.+.. ..-..++.++.+.|++||++++--+.|
T Consensus 122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 2469999865333221 011258899999999999876655543
No 241
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.12 E-value=0.0015 Score=65.09 Aligned_cols=109 Identities=21% Similarity=0.313 Sum_probs=62.0
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
.+...|+|.|||-.. +|+....+-+|+..|.-.. . +. ++.+|...+|-+.+..|+|++
T Consensus 71 ~~~~viaD~GCGdA~-----la~~~~~~~~V~SfDLva~------------n---~~--Vtacdia~vPL~~~svDv~Vf 128 (219)
T PF05148_consen 71 PKSLVIADFGCGDAK-----LAKAVPNKHKVHSFDLVAP------------N---PR--VTACDIANVPLEDESVDVAVF 128 (219)
T ss_dssp -TTS-EEEES-TT-H-----HHHH--S---EEEEESS-S------------S---TT--EEES-TTS-S--TT-EEEEEE
T ss_pred CCCEEEEECCCchHH-----HHHhcccCceEEEeeccCC------------C---CC--EEEecCccCcCCCCceeEEEE
Confidence 456799999999632 3332223457999997531 2 23 567999999988888997664
Q ss_pred -ccccCChhhHHHHHHHHHhhcccCeEEEEEcccccccccCCC-C-cc-ccCCcEEEEE
Q 041205 210 -AALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPV-V-EH-ELFDFKVLSI 264 (535)
Q Consensus 210 -aALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~-V-dp-dl~GFeil~v 264 (535)
-++.| .+...++.+..|+|||||.|.+-.... +|-.+. + .. ..-||+....
T Consensus 129 cLSLMG--Tn~~~fi~EA~RvLK~~G~L~IAEV~S--Rf~~~~~F~~~~~~~GF~~~~~ 183 (219)
T PF05148_consen 129 CLSLMG--TNWPDFIREANRVLKPGGILKIAEVKS--RFENVKQFIKALKKLGFKLKSK 183 (219)
T ss_dssp ES---S--S-HHHHHHHHHHHEEEEEEEEEEEEGG--G-S-HHHHHHHHHCTTEEEEEE
T ss_pred EhhhhC--CCcHHHHHHHHheeccCcEEEEEEecc--cCcCHHHHHHHHHHCCCeEEec
Confidence 46667 799999999999999999999976532 232110 0 01 2369998653
No 242
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.0037 Score=61.58 Aligned_cols=106 Identities=14% Similarity=0.213 Sum_probs=76.2
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
..++-++|||||. |.-+-+|++...+++...++||+|.|.+..++-++.-+ -++..+++|....... +..|++.+
T Consensus 42 ~~~~i~lEIG~GS-GvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~---~~~~~V~tdl~~~l~~-~~VDvLvf 116 (209)
T KOG3191|consen 42 HNPEICLEIGCGS-GVVSTFLASVIGPQALYLATDINPEALEATLETARCNR---VHIDVVRTDLLSGLRN-ESVDVLVF 116 (209)
T ss_pred cCceeEEEecCCc-chHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC---CccceeehhHHhhhcc-CCccEEEE
Confidence 4588999999996 55555666766788999999999999999998888777 3588899998765554 56777665
Q ss_pred cc-ccCC--------------------hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 210 AA-LAGN--------------------EEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 210 aA-LVgm--------------------~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
.- .|.- .+--.+++.++-..|.|.|++.+-.
T Consensus 117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~ 168 (209)
T KOG3191|consen 117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA 168 (209)
T ss_pred CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee
Confidence 31 1100 1223456666777788888776643
No 243
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.03 E-value=0.0042 Score=65.48 Aligned_cols=113 Identities=21% Similarity=0.299 Sum_probs=77.8
Q ss_pred CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc-----ccccccc-CC
Q 041205 128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC-----DIMEVKE-KL 201 (535)
Q Consensus 128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G-----DA~el~~-dL 201 (535)
+++.+.+||-+|+||+|+-++..|+ .+.-.+|+.+|+++.+++.|++ +| . +.+..... +..+... .+
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Ak-a~GA~~VVi~d~~~~Rle~Ak~----~G-a-~~~~~~~~~~~~~~~~~~v~~~~ 238 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAK-AMGASDVVITDLVANRLELAKK----FG-A-TVTDPSSHKSSPQELAELVEKAL 238 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHH-HcCCCcEEEeecCHHHHHHHHH----hC-C-eEEeeccccccHHHHHHHHHhhc
Confidence 4689999999999999999999999 4666799999999999999998 34 1 12222222 1111111 11
Q ss_pred --CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcccccccccCCCCcc
Q 041205 202 --GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEH 254 (535)
Q Consensus 202 --~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdp 254 (535)
..||++|--+.. ...++-....+++||.+++- .+|-...-+|..+.
T Consensus 239 g~~~~d~~~dCsG~------~~~~~aai~a~r~gGt~vlv-g~g~~~~~fpi~~v 286 (354)
T KOG0024|consen 239 GKKQPDVTFDCSGA------EVTIRAAIKATRSGGTVVLV-GMGAEEIQFPIIDV 286 (354)
T ss_pred cccCCCeEEEccCc------hHHHHHHHHHhccCCEEEEe-ccCCCccccChhhh
Confidence 239999976665 33455557789999996664 34544566776554
No 244
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=96.99 E-value=0.0028 Score=64.69 Aligned_cols=96 Identities=14% Similarity=0.181 Sum_probs=67.2
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII 208 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf 208 (535)
+.++++||-+|+|++|+.++.+|+++..+++|+++|.+++..+.|++ +| .. +.. + +.... ..||+||
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~-~~----~~~-~--~~~~~-~g~d~vi 227 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----AD-ET----YLI-D--DIPED-LAVDHAF 227 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cC-ce----eeh-h--hhhhc-cCCcEEE
Confidence 46789999999999999999888843456789999999999888864 34 11 110 1 11111 2489998
Q ss_pred eccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
=...- ..-...+....+.|++||++++-.
T Consensus 228 D~~G~---~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 228 ECVGG---RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred ECCCC---CccHHHHHHHHHhCcCCcEEEEEe
Confidence 54321 113457888889999999998753
No 245
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.94 E-value=0.0051 Score=61.57 Aligned_cols=110 Identities=16% Similarity=0.265 Sum_probs=70.9
Q ss_pred HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205 121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK 200 (535)
Q Consensus 121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d 200 (535)
..+...+.+.++..|+|||.|+|-+|.-++ + .+.+|++||+|+..++.-++.+.. ..+++++.+|+.++...
T Consensus 20 ~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~-~---~~~~v~~vE~d~~~~~~L~~~~~~----~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 20 DKIVDALDLSEGDTVLEIGPGPGALTRELL-K---RGKRVIAVEIDPDLAKHLKERFAS----NPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHTCGTTSEEEEESSTTSCCHHHHH-H---HSSEEEEEESSHHHHHHHHHHCTT----CSSEEEEES-TTTSCGG
T ss_pred HHHHHhcCCCCCCEEEEeCCCCccchhhHh-c---ccCcceeecCcHhHHHHHHHHhhh----cccceeeecchhccccH
Confidence 334444555789999999999887777665 4 238999999999998888877662 25899999999865443
Q ss_pred C--CCcceEEeccccCChhhHHHHHHHHHhhcccC---eEEEEEc
Q 041205 201 L--GEYDCIILAALAGNEEEKAKILGHIRKYMKEG---GVLLVRS 240 (535)
Q Consensus 201 L--~~FDvVfiaALVgm~edK~~VL~eL~rvLKPG---GvLVvRs 240 (535)
. ..-.+.+++++- . .--..++.++...-+.| .++++-.
T Consensus 92 ~~~~~~~~~vv~NlP-y-~is~~il~~ll~~~~~g~~~~~l~vq~ 134 (262)
T PF00398_consen 92 DLLKNQPLLVVGNLP-Y-NISSPILRKLLELYRFGRVRMVLMVQK 134 (262)
T ss_dssp GHCSSSEEEEEEEET-G-TGHHHHHHHHHHHGGGCEEEEEEEEEH
T ss_pred HhhcCCceEEEEEec-c-cchHHHHHHHhhcccccccceEEEEeh
Confidence 2 112234444332 1 12345777776644443 4555544
No 246
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.91 E-value=0.0028 Score=62.91 Aligned_cols=104 Identities=19% Similarity=0.267 Sum_probs=76.7
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
-.++||||.|+|+ |+.+|.-|+ .....|+..|++|-..+..+-+++..| -.|.|...|..- +...||+|+.
T Consensus 78 VrgkrVLd~gags-gLvaIAaa~--aGA~~v~a~d~~P~~~~ai~lNa~ang---v~i~~~~~d~~g---~~~~~Dl~La 148 (218)
T COG3897 78 VRGKRVLDLGAGS-GLVAIAAAR--AGAAEVVAADIDPWLEQAIRLNAAANG---VSILFTHADLIG---SPPAFDLLLA 148 (218)
T ss_pred cccceeeeccccc-ChHHHHHHH--hhhHHHHhcCCChHHHHHhhcchhhcc---ceeEEeeccccC---CCcceeEEEe
Confidence 5689999999996 899998888 244679999999999999999998888 379999988742 4457999997
Q ss_pred ccccCChhhHHHHHHHHHhhcccCeEEEEEccc
Q 041205 210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRSAK 242 (535)
Q Consensus 210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~ 242 (535)
.-++=-...-.+++.-..+....|..+++-+++
T Consensus 149 gDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 149 GDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred eceecCchHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 644411344556666444444556677776653
No 247
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.90 E-value=0.0042 Score=64.72 Aligned_cols=80 Identities=16% Similarity=0.108 Sum_probs=62.4
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC-----CCC
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK-----LGE 203 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d-----L~~ 203 (535)
..++..++|-=+|.+|-|..++-. +++++|+|+|+|+++++.|++.+...+ .++.+++++-.++... +..
T Consensus 18 ~~~ggiyVD~TlG~GGHS~~iL~~--l~~g~vigiD~D~~Al~~ak~~L~~~~---~R~~~i~~nF~~l~~~l~~~~~~~ 92 (305)
T TIGR00006 18 IKPDGIYIDCTLGFGGHSKAILEQ--LGTGRLIGIDRDPQAIAFAKERLSDFE---GRVVLIHDNFANFFEHLDELLVTK 92 (305)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHh--CCCCEEEEEcCCHHHHHHHHHHHhhcC---CcEEEEeCCHHHHHHHHHhcCCCc
Confidence 467789999999988888776633 456999999999999999999887644 6899999987765432 235
Q ss_pred cceEEecccc
Q 041205 204 YDCIILAALA 213 (535)
Q Consensus 204 FDvVfiaALV 213 (535)
+|.|++|-.|
T Consensus 93 vDgIl~DLGv 102 (305)
T TIGR00006 93 IDGILVDLGV 102 (305)
T ss_pred ccEEEEeccC
Confidence 7888877665
No 248
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.86 E-value=0.0031 Score=66.61 Aligned_cols=99 Identities=21% Similarity=0.224 Sum_probs=70.9
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCC-Ccc
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLG-EYD 205 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~-~FD 205 (535)
..+.++++|+-+|.|.+|..++.+|+. -|++|+++|++++-.+.|+++-+.. ++.+.-.+...... .||
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka--~ga~Via~~~~~~K~e~a~~lGAd~--------~i~~~~~~~~~~~~~~~d 231 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKA--MGAEVIAITRSEEKLELAKKLGADH--------VINSSDSDALEAVKEIAD 231 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHH--cCCeEEEEeCChHHHHHHHHhCCcE--------EEEcCCchhhHHhHhhCc
Confidence 346899999999999999999999994 4699999999999998888663322 22211111122222 299
Q ss_pred eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEccc
Q 041205 206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAK 242 (535)
Q Consensus 206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~ 242 (535)
+|+.. + . ..-+....+.|++||.+++-...
T Consensus 232 ~ii~t--v----~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 232 AIIDT--V----G-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EEEEC--C----C-hhhHHHHHHHHhcCCEEEEECCC
Confidence 99874 3 2 45667777799999999986543
No 249
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=96.82 E-value=0.0048 Score=62.84 Aligned_cols=97 Identities=14% Similarity=0.211 Sum_probs=65.7
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeC---ChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcc
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDI---DETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYD 205 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDI---DpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FD 205 (535)
..++++||-+|+|++|+.++.+|+. .|++|++++. +++..+.++ ++| . +.+.....|..+ ......||
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~--~G~~vi~~~~~~~~~~~~~~~~----~~G-a-~~v~~~~~~~~~-~~~~~~~d 240 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRL--RGFEVYVLNRRDPPDPKADIVE----ELG-A-TYVNSSKTPVAE-VKLVGEFD 240 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCHHHHHHHH----HcC-C-EEecCCccchhh-hhhcCCCC
Confidence 3578999999999999999999994 5789999997 566666554 456 2 112111111111 11124699
Q ss_pred eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+||-.... ...+....+.|++||.+++-.
T Consensus 241 ~vid~~g~------~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 241 LIIEATGV------PPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred EEEECcCC------HHHHHHHHHHccCCcEEEEEe
Confidence 99875432 236788889999999988754
No 250
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.79 E-value=0.0079 Score=56.42 Aligned_cols=84 Identities=21% Similarity=0.271 Sum_probs=62.0
Q ss_pred EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCC--CcceEEeccc-c-C----C---hhhHHHHHHHHH
Q 041205 159 HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLG--EYDCIILAAL-A-G----N---EEEKAKILGHIR 227 (535)
Q Consensus 159 ~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~--~FDvVfiaAL-V-g----m---~edK~~VL~eL~ 227 (535)
+|.|+||-++|++..++.++..| +.++++++.....++..... .+|+|++.-. . | . .+.-...++.+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~-~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG-LEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT--GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC-CCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 58999999999999999999999 77899999999988776554 4998876421 1 2 1 345567889999
Q ss_pred hhcccCeEEEEEcccc
Q 041205 228 KYMKEGGVLLVRSAKG 243 (535)
Q Consensus 228 rvLKPGGvLVvRsa~G 243 (535)
+.|+|||++++--+.|
T Consensus 80 ~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 80 ELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHEEEEEEEEEEE--S
T ss_pred HhhccCCEEEEEEeCC
Confidence 9999999988865433
No 251
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.78 E-value=0.0042 Score=67.84 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=52.7
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcC-----C--CcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc-----
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHM-----K--STHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK----- 198 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l-----~--Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~----- 198 (535)
.+.+|+|.|||.+++..-.+ .+.. . ...++|+|+|+.++..++.++...+. ..+.++++|.....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~-~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~--~~~~i~~~d~l~~~~~~~~ 107 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALL-KKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL--LEINVINFNSLSYVLLNIE 107 (524)
T ss_pred cceEEEeCCCCccHHHHHHH-HHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC--CCceeeecccccccccccc
Confidence 46799999999876665444 3221 1 25799999999999999999877662 24566666643211
Q ss_pred cCCCCcceEEec
Q 041205 199 EKLGEYDCIILA 210 (535)
Q Consensus 199 ~dL~~FDvVfia 210 (535)
...+.||+|+.-
T Consensus 108 ~~~~~fD~IIgN 119 (524)
T TIGR02987 108 SYLDLFDIVITN 119 (524)
T ss_pred cccCcccEEEeC
Confidence 122469999865
No 252
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.67 E-value=0.031 Score=59.29 Aligned_cols=160 Identities=14% Similarity=0.086 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHhHhhhhHHHhHhhccCCCcccc---ccCccchhhH---HhHHHH---HHHHHH--hh----CCCCC
Q 041205 68 QQMRQSLIILCARAESLLELEFATYLSKISLPLNDL---NRFPYYENYV---KLAKLE---YGALIE--NT----GVAQL 132 (535)
Q Consensus 68 q~l~~~Lr~lca~AE~~LE~h~A~~Lls~~~pl~~L---~~FpYy~NYv---~LirlE---~~lL~~--~~----~l~~p 132 (535)
..+-+.+-..+.+.......++.+.+..+.++...- ..|.|..-+. ..+..= ...+.. ++ +...-
T Consensus 99 ~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v 178 (342)
T KOG3178|consen 99 GSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGV 178 (342)
T ss_pred CchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccC
Confidence 344455666667777778888999998876654443 2366654433 333211 111111 11 22334
Q ss_pred CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccc
Q 041205 133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAAL 212 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaAL 212 (535)
...+|+|.|.+-.+..++ . ++|. |.+|+.|..-+..++.... .| |+++-||... +...-|+||+.-.
T Consensus 179 ~~avDvGgGiG~v~k~ll-~-~fp~--ik~infdlp~v~~~a~~~~-~g-----V~~v~gdmfq---~~P~~daI~mkWi 245 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLL-S-KYPH--IKGINFDLPFVLAAAPYLA-PG-----VEHVAGDMFQ---DTPKGDAIWMKWI 245 (342)
T ss_pred ceEEEcCCcHhHHHHHHH-H-hCCC--CceeecCHHHHHhhhhhhc-CC-----cceecccccc---cCCCcCeEEEEee
Confidence 899999999544454444 4 4654 8889999998888888776 55 7888888753 2334689998866
Q ss_pred cC-C-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 213 AG-N-EEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 213 Vg-m-~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+| + -++-.++|.++++-|+|||.|++-+
T Consensus 246 LhdwtDedcvkiLknC~~sL~~~GkIiv~E 275 (342)
T KOG3178|consen 246 LHDWTDEDCVKILKNCKKSLPPGGKIIVVE 275 (342)
T ss_pred cccCChHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 65 4 7899999999999999999888865
No 253
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=96.65 E-value=0.0066 Score=62.46 Aligned_cols=101 Identities=21% Similarity=0.219 Sum_probs=68.1
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC--CCC
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK--LGE 203 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d--L~~ 203 (535)
..+.++++||-+|+|++|..++.+|+. .|+ +|+++|.+++..+.+++ +| ...-+.....|..+.... .+.
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~--~G~~~Vi~~~~~~~r~~~a~~----~G-a~~~i~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVA--AGASQVVAVDLNEDKLALARE----LG-ATATVNAGDPNAVEQVRELTGGG 259 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCcEEEEcCCHHHHHHHHH----cC-CceEeCCCchhHHHHHHHHhCCC
Confidence 346788999999999999999999993 577 69999999999887765 45 211111111121111111 125
Q ss_pred cceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 204 FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+|+||-.... ...+....+.+++||.++.-.
T Consensus 260 ~d~vid~~G~------~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 260 VDYAFEMAGS------VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CCEEEECCCC------hHHHHHHHHHHhcCCEEEEEc
Confidence 8999854322 346777888999999988754
No 254
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.003 Score=69.70 Aligned_cols=117 Identities=17% Similarity=0.234 Sum_probs=85.4
Q ss_pred ccchhhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCC
Q 041205 107 PYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKR 186 (535)
Q Consensus 107 pYy~NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~r 186 (535)
.||.+--...+.=+..+...+++..++-++||=||+ |..++.+|+ +-.+|+||++++++++-|++++..-| + .+
T Consensus 359 AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGT-G~iglala~---~~~~ViGvEi~~~aV~dA~~nA~~Ng-i-sN 432 (534)
T KOG2187|consen 359 AFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGT-GTIGLALAR---GVKRVIGVEISPDAVEDAEKNAQING-I-SN 432 (534)
T ss_pred hhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecC-Cceehhhhc---cccceeeeecChhhcchhhhcchhcC-c-cc
Confidence 355555555555577777888888999999999995 888899988 45799999999999999999999999 5 68
Q ss_pred eEEEEccccccccCC-CC----cc-eEEec-cccCChhhHHHHHHHHHhhccc
Q 041205 187 MKFLTCDIMEVKEKL-GE----YD-CIILA-ALAGNEEEKAKILGHIRKYMKE 232 (535)
Q Consensus 187 I~Fi~GDA~el~~dL-~~----FD-vVfia-ALVgm~edK~~VL~eL~rvLKP 232 (535)
.+|++|-++++...+ +. =+ +++++ .-.|+ =..++..+.++-+|
T Consensus 433 a~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Gl---h~~~ik~l~~~~~~ 482 (534)
T KOG2187|consen 433 ATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGL---HMKVIKALRAYKNP 482 (534)
T ss_pred eeeeecchhhccchhcccCCCCCceEEEECCCcccc---cHHHHHHHHhccCc
Confidence 999999877655433 22 24 55555 23343 24456666555434
No 255
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.63 E-value=0.01 Score=59.51 Aligned_cols=100 Identities=20% Similarity=0.294 Sum_probs=68.1
Q ss_pred CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHh-------hcCCcC--------CCeEEEEcccccc
Q 041205 133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVS-------SDDEIE--------KRMKFLTCDIMEV 197 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~-------~lG~Ls--------~rI~Fi~GDA~el 197 (535)
++|..||+|.+|.+-..... ..|..|+.+|++++.++.+++.++ +.|.+. .++++ +.|..
T Consensus 4 ~kI~VIG~G~mG~~ia~~la--~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~-- 78 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCA--VAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD-- 78 (282)
T ss_pred cEEEEEccCHHHHHHHHHHH--HCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH--
Confidence 47999999998887555443 257799999999999987764322 223111 13443 23321
Q ss_pred ccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 198 KEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 198 ~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
...+.|+|+.+.--. ..-|..++.++.+.++|+.+|+...
T Consensus 79 --~~~~aDlVi~av~e~-~~~k~~~~~~l~~~~~~~~il~s~t 118 (282)
T PRK05808 79 --DLKDADLVIEAATEN-MDLKKKIFAQLDEIAKPEAILATNT 118 (282)
T ss_pred --HhccCCeeeeccccc-HHHHHHHHHHHHhhCCCCcEEEECC
Confidence 246789999964321 2568899999999999998885544
No 256
>PLN02740 Alcohol dehydrogenase-like
Probab=96.61 E-value=0.011 Score=61.31 Aligned_cols=101 Identities=17% Similarity=0.165 Sum_probs=67.8
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE--ccccccccCC--
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLT--CDIMEVKEKL-- 201 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~--GDA~el~~dL-- 201 (535)
..+.++++||-+|+|++|+.++.+|+. .|+ +|+++|.+++..+.|++ +| ...-+.... .|..+....+
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~--~G~~~Vi~~~~~~~r~~~a~~----~G-a~~~i~~~~~~~~~~~~v~~~~~ 266 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARA--RGASKIIGVDINPEKFEKGKE----MG-ITDFINPKDSDKPVHERIREMTG 266 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--CCCCcEEEEcCChHHHHHHHH----cC-CcEEEecccccchHHHHHHHHhC
Confidence 456789999999999999999999993 577 69999999999888865 46 211121111 0111111111
Q ss_pred CCcceEEeccccCChhhHHHHHHHHHhhcccC-eEEEEEc
Q 041205 202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEG-GVLLVRS 240 (535)
Q Consensus 202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPG-GvLVvRs 240 (535)
+.||+||-.... ...+....+.+++| |++++-.
T Consensus 267 ~g~dvvid~~G~------~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 267 GGVDYSFECAGN------VEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CCCCEEEECCCC------hHHHHHHHHhhhcCCCEEEEEc
Confidence 259999865332 35677777888897 8887744
No 257
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=96.55 E-value=0.0086 Score=61.23 Aligned_cols=101 Identities=19% Similarity=0.140 Sum_probs=67.6
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-cc--cCCC
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VK--EKLG 202 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~--~dL~ 202 (535)
..+.++++||-.|+|++|..++.+|+. .|+ +|+++|.+++..+.+++ +| ...-+.....|..+ +. ....
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~--~G~~~Vi~~~~~~~~~~~~~~----~G-a~~~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAAL--AGASKIIAVDIDDRKLEWARE----FG-ATHTVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----cC-CceEEcCCCcCHHHHHHHHhCCC
Confidence 345789999999999999999999993 577 59999999998877754 45 21111111112111 11 1113
Q ss_pred CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
++|+|+-.... ...+....+.+++||++++-.
T Consensus 245 g~d~vid~~g~------~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 245 GADVVIDAVGR------PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCCEEEECCCC------HHHHHHHHHHhccCCEEEEEC
Confidence 58988853221 245677788999999998754
No 258
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=96.55 E-value=0.012 Score=59.93 Aligned_cols=94 Identities=18% Similarity=0.166 Sum_probs=67.8
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC 206 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv 206 (535)
..+.++++||-.|+|++|..++.+|+. .|++|++++.+++..+.|++ +| ...-+. ..+ .....+|+
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~--~G~~vi~~~~~~~~~~~a~~----~G-a~~vi~-----~~~--~~~~~~d~ 226 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALA--QGATVHVMTRGAAARRLALA----LG-AASAGG-----AYD--TPPEPLDA 226 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHH----hC-Cceecc-----ccc--cCcccceE
Confidence 356789999999999999999999994 58899999999998766654 66 221111 111 11135898
Q ss_pred EEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
++....++ ..+....+.|++||++++-.
T Consensus 227 ~i~~~~~~------~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 227 AILFAPAG------GLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred EEECCCcH------HHHHHHHHhhCCCcEEEEEe
Confidence 87654442 36888889999999998753
No 259
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.48 E-value=0.019 Score=58.25 Aligned_cols=98 Identities=22% Similarity=0.333 Sum_probs=65.2
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc-ccCC-CCcceE
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV-KEKL-GEYDCI 207 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el-~~dL-~~FDvV 207 (535)
-.+++||+||=+ =+|||.+|- ..+..+|+.+|||+..++.=++.+++.| + .|+.+..|..+- |..+ +.||++
T Consensus 43 L~gk~il~lGDD--DLtSlA~al-~~~~~~I~VvDiDeRll~fI~~~a~~~g-l--~i~~~~~DlR~~LP~~~~~~fD~f 116 (243)
T PF01861_consen 43 LEGKRILFLGDD--DLTSLALAL-TGLPKRITVVDIDERLLDFINRVAEEEG-L--PIEAVHYDLRDPLPEELRGKFDVF 116 (243)
T ss_dssp STT-EEEEES-T--T-HHHHHHH-HT--SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE---TTS---TTTSS-BSEE
T ss_pred ccCCEEEEEcCC--cHHHHHHHh-hCCCCeEEEEEcCHHHHHHHHHHHHHcC-C--ceEEEEecccccCCHHHhcCCCEE
Confidence 468999999987 578888886 3456899999999999999999999999 4 499999998753 3333 569999
Q ss_pred EeccccCChhhHHHHHHHHHhhcccCe
Q 041205 208 ILAALAGNEEEKAKILGHIRKYMKEGG 234 (535)
Q Consensus 208 fiaALVgm~edK~~VL~eL~rvLKPGG 234 (535)
|.+---. .+.-.-++......||.-|
T Consensus 117 ~TDPPyT-~~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 117 FTDPPYT-PEGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp EE---SS-HHHHHHHHHHHHHTB-STT
T ss_pred EeCCCCC-HHHHHHHHHHHHHHhCCCC
Confidence 9984332 3566778888888888766
No 260
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.42 E-value=0.015 Score=58.72 Aligned_cols=99 Identities=18% Similarity=0.251 Sum_probs=66.1
Q ss_pred CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc----------CCc--------CCCeEEEEccc
Q 041205 133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD----------DEI--------EKRMKFLTCDI 194 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l----------G~L--------s~rI~Fi~GDA 194 (535)
++|..||+|.+|.+-..... ..|..|+.+|++++.++.+++.+++. |.+ ..++.+. .|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la--~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFA--RTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHH--hcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH
Confidence 58999999998876544333 25789999999999999877654431 200 0123332 221
Q ss_pred cccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205 195 MEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 195 ~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
....+.|+|+.+. ....+.|..++.++.+.++|+.+|+..
T Consensus 81 ----~~~~~aDlVieav-~e~~~~k~~~~~~l~~~~~~~~il~S~ 120 (291)
T PRK06035 81 ----ESLSDADFIVEAV-PEKLDLKRKVFAELERNVSPETIIASN 120 (291)
T ss_pred ----HHhCCCCEEEEcC-cCcHHHHHHHHHHHHhhCCCCeEEEEc
Confidence 1235689999863 322345899999999999999877643
No 261
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.34 E-value=0.013 Score=61.25 Aligned_cols=136 Identities=22% Similarity=0.259 Sum_probs=100.3
Q ss_pred hccCCCccccccCccchhhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHH
Q 041205 94 SKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLA 173 (535)
Q Consensus 94 ls~~~pl~~L~~FpYy~NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelA 173 (535)
+.+---+.+...|.|-+-|-.+. .+.+..|++||-||.|-+|+--+.. + |-.=..++-+|+|...++.+
T Consensus 93 lDgviqlte~de~~Yqemi~~l~---------l~s~~npkkvlVVgggDggvlrevi-k-H~~ve~i~~~eiD~~Vie~s 161 (337)
T KOG1562|consen 93 LDGVIQLTERDEFAYQEMIAHLA---------LCSHPNPKKVLVVGGGDGGVLREVI-K-HKSVENILLCEIDENVIESS 161 (337)
T ss_pred eCCeeeCCccccccceeeeeccc---------cccCCCCCeEEEEecCCccceeeee-c-cccccceeeehhhHHHHHHH
Confidence 33433455667788865554432 2345789999999999988887665 3 43335788899999999999
Q ss_pred HHHHhhc--CCcCCCeEEEEccccccccCC--CCcceEEecccc--CC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 174 RRIVSSD--DEIEKRMKFLTCDIMEVKEKL--GEYDCIILAALA--GN--EEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 174 R~li~~l--G~Ls~rI~Fi~GDA~el~~dL--~~FDvVfiaALV--gm--~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
++..... |.-+.+|.++-||+..+.... +.||+|++++.- |. .-=...++..+.+.||+||++++-.
T Consensus 162 k~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 162 KQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred HHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 9998764 412478999999998877655 569999988653 32 2234567888999999999999865
No 262
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.33 E-value=0.026 Score=56.82 Aligned_cols=101 Identities=22% Similarity=0.316 Sum_probs=67.2
Q ss_pred CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc-------CCcC--------CCeEEEEccccc
Q 041205 132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD-------DEIE--------KRMKFLTCDIME 196 (535)
Q Consensus 132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l-------G~Ls--------~rI~Fi~GDA~e 196 (535)
-++|..||+|.+|.+-..... ..|..|+.+|.+++.++.+.+.+.+. |.+. .++++. .|.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la--~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-- 78 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCA--LAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL-- 78 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHH--HCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH--
Confidence 468999999998876544333 25789999999999998876543321 3111 234432 232
Q ss_pred cccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 197 VKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 197 l~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
....+.|+|+.+- .....-|..++..+...++|+.+|+..+
T Consensus 79 --~~~~~aD~Vieav-pe~~~~k~~~~~~l~~~~~~~~ii~s~t 119 (292)
T PRK07530 79 --EDLADCDLVIEAA-TEDETVKRKIFAQLCPVLKPEAILATNT 119 (292)
T ss_pred --HHhcCCCEEEEcC-cCCHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 2345789999863 2112458899999999999999887533
No 263
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.31 E-value=0.015 Score=55.52 Aligned_cols=99 Identities=21% Similarity=0.290 Sum_probs=67.4
Q ss_pred EEEEEccCCChhhH-HHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh-------cCCc--------CCCeEEEEcccccc
Q 041205 134 KVAFVGSGPMPLTS-IILASQHMKSTHFDNIDIDETANNLARRIVSS-------DDEI--------EKRMKFLTCDIMEV 197 (535)
Q Consensus 134 RVLeIGSGplPlTA-I~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~-------lG~L--------s~rI~Fi~GDA~el 197 (535)
+|.-||+|.+|-.- .++|. .|..|+-+|.|++.++.+++.+++ .|.+ -.++++ ..|..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~---~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~-- 74 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR---AGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLE-- 74 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH---TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGG--
T ss_pred CEEEEcCCHHHHHHHHHHHh---CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHH--
Confidence 58899999988553 34444 589999999999999999887765 1211 135665 33432
Q ss_pred ccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 198 KEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 198 ~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
+..+.|+|+=+ .....+-|.++|.++.+.++|+.+|...+.
T Consensus 75 --~~~~adlViEa-i~E~l~~K~~~~~~l~~~~~~~~ilasnTS 115 (180)
T PF02737_consen 75 --EAVDADLVIEA-IPEDLELKQELFAELDEICPPDTILASNTS 115 (180)
T ss_dssp --GGCTESEEEE--S-SSHHHHHHHHHHHHCCS-TTSEEEE--S
T ss_pred --HHhhhheehhh-ccccHHHHHHHHHHHHHHhCCCceEEecCC
Confidence 22368988854 344468999999999999999999988764
No 264
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=96.29 E-value=0.015 Score=58.60 Aligned_cols=88 Identities=13% Similarity=0.168 Sum_probs=61.6
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcE-EEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTH-FDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII 208 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~-VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf 208 (535)
.++++||-+|+|++|+.++.+|+. .|++ |+.+|.+++..+.|... + . + |..+. ....||+||
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~--~G~~~v~~~~~~~~rl~~a~~~----~-~---i-----~~~~~--~~~g~Dvvi 205 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKA--AGGSPPAVWETNPRRRDGATGY----E-V---L-----DPEKD--PRRDYRAIY 205 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHH--cCCceEEEeCCCHHHHHhhhhc----c-c---c-----Chhhc--cCCCCCEEE
Confidence 467899999999999999999993 4665 77889998887666532 2 1 1 11100 123599998
Q ss_pred eccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
-.... ...++...+.|++||++++-.
T Consensus 206 d~~G~------~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 206 DASGD------PSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred ECCCC------HHHHHHHHHhhhcCcEEEEEe
Confidence 64332 346788888999999998753
No 265
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=96.28 E-value=0.012 Score=58.28 Aligned_cols=98 Identities=14% Similarity=0.072 Sum_probs=66.2
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCcE-EEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE-cc-ccccccCCCCcc
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTH-FDNIDIDETANNLARRIVSSDDEIEKRMKFLT-CD-IMEVKEKLGEYD 205 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~-VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~-GD-A~el~~dL~~FD 205 (535)
..++++||-+|+|++|+.++.+|+. .|++ |+++|.+++..+.|++ +| ...-+.... .+ +.+.. ....+|
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~--~G~~~Vi~~~~~~~r~~~a~~----~G-a~~~i~~~~~~~~~~~~~-~~~g~d 189 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAA--AGAARVVAADPSPDRRELALS----FG-ATALAEPEVLAERQGGLQ-NGRGVD 189 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----cC-CcEecCchhhHHHHHHHh-CCCCCC
Confidence 3578999999999999999999994 4775 9999999998877765 45 211111100 00 11111 123599
Q ss_pred eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+||-.... ...+....+.++|||++++-.
T Consensus 190 ~vid~~G~------~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 190 VALEFSGA------TAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred EEEECCCC------hHHHHHHHHHhcCCCEEEEec
Confidence 99864322 346778888999999998754
No 266
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.27 E-value=0.019 Score=60.02 Aligned_cols=102 Identities=18% Similarity=0.194 Sum_probs=69.7
Q ss_pred CCEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhh-------cCC----cCCCeEEEEcccccccc
Q 041205 132 LKKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSS-------DDE----IEKRMKFLTCDIMEVKE 199 (535)
Q Consensus 132 pkRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~-------lG~----Ls~rI~Fi~GDA~el~~ 199 (535)
-++|..||+|.+|..-.. +|. .|..|+.+|+++++.+.++..++. .|. ...++++.. |.. .
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~---aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~---~ 79 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALA---HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIE---A 79 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHH---H
Confidence 478999999988766333 333 689999999999998887664431 220 113455432 221 2
Q ss_pred CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
...+.|+|+-+ ...-.+-|..+++++.+.++||.+|...+.
T Consensus 80 av~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~aIlaSnTS 120 (321)
T PRK07066 80 CVADADFIQES-APEREALKLELHERISRAAKPDAIIASSTS 120 (321)
T ss_pred HhcCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 23568999875 332246799999999999999996666554
No 267
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.26 E-value=0.062 Score=54.26 Aligned_cols=144 Identities=15% Similarity=0.133 Sum_probs=85.5
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC----C
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL----G 202 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL----~ 202 (535)
+.+.++++||.+|.. .|.|.-.++.-..+++.|.+|+.++....-=-.++++- .||-=+-+||.. |... .
T Consensus 69 ~~ik~gskVLYLGAa-sGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R----~NIiPIl~DAr~-P~~Y~~lv~ 142 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAA-SGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR----PNIIPILEDARH-PEKYRMLVE 142 (229)
T ss_dssp -S--TT-EEEEETTT-TSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS----TTEEEEES-TTS-GGGGTTTS-
T ss_pred cCCCCCCEEEEeccc-CCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC----CceeeeeccCCC-hHHhhcccc
Confidence 356899999999996 58888888874456899999999997654433444432 478778899874 3322 4
Q ss_pred CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc-ccccccccCCCC------cc-ccCCcEEEEEEc--CCCcce
Q 041205 203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS-AKGARAFLYPVV------EH-ELFDFKVLSIFH--PTNDVI 272 (535)
Q Consensus 203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs-a~GlR~fLYP~V------dp-dl~GFeil~v~h--P~~eVI 272 (535)
..|+||.+-.-. .+-.=+..+....||+||.+++-- +..+..-.-|.. +. .-.||++.+..+ |...-
T Consensus 143 ~VDvI~~DVaQp--~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy~~d- 219 (229)
T PF01269_consen 143 MVDVIFQDVAQP--DQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEPYERD- 219 (229)
T ss_dssp -EEEEEEE-SST--THHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTTSTT-
T ss_pred cccEEEecCCCh--HHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCCCCCC-
Confidence 699999884431 344445566678999999877632 111111111211 00 125899987444 76632
Q ss_pred eeeEEEe
Q 041205 273 NSVVLLQ 279 (535)
Q Consensus 273 NSVVvAR 279 (535)
..+|+++
T Consensus 220 H~~vv~~ 226 (229)
T PF01269_consen 220 HAMVVGR 226 (229)
T ss_dssp EEEEEEE
T ss_pred cEEEEEE
Confidence 3355554
No 268
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=96.22 E-value=0.02 Score=56.64 Aligned_cols=101 Identities=20% Similarity=0.221 Sum_probs=68.2
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-c-ccCCCCc
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-V-KEKLGEY 204 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l-~~dL~~F 204 (535)
..+.++.+||..|+|++|..++.+|+. .|.+|++++.+++..+.+++ .| ...-+.....+..+ + ......+
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~--~G~~V~~~~~s~~~~~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~~ 233 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKA--MGAAVIAVDIKEEKLELAKE----LG-ADEVLNSLDDSPKDKKAAGLGGGF 233 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHH--cCCEEEEEcCCHHHHHHHHH----hC-CCEEEcCCCcCHHHHHHHhcCCCc
Confidence 346788999999999999999999994 57899999999998877754 45 21111111001100 0 1122459
Q ss_pred ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
|+|+-.... ...+.++.+.|++||.++.-.
T Consensus 234 D~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 234 DVIFDFVGT------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred eEEEECCCC------HHHHHHHHHHhhcCCEEEEEC
Confidence 988754222 457888999999999998754
No 269
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=96.21 E-value=0.031 Score=57.79 Aligned_cols=98 Identities=16% Similarity=0.221 Sum_probs=63.5
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII 208 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf 208 (535)
+.++++||-.|+|++|+.++.+|+. .|++|+.++.+++... ..++++| . +. .+...+...+....+.+|+||
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~--~Ga~vi~~~~~~~~~~---~~~~~~G-a-~~-vi~~~~~~~~~~~~~~~D~vi 252 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKA--FGLKVTVISSSSNKED---EAINRLG-A-DS-FLVSTDPEKMKAAIGTMDYII 252 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCcchhh---hHHHhCC-C-cE-EEcCCCHHHHHhhcCCCCEEE
Confidence 4578999999999999999999994 5789999988875432 2233456 2 11 111111111111123589998
Q ss_pred eccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
-.... ...+....+.+++||+++.-.
T Consensus 253 d~~g~------~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 253 DTVSA------VHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred ECCCC------HHHHHHHHHHhcCCcEEEEeC
Confidence 53222 236778889999999998754
No 270
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=96.21 E-value=0.013 Score=58.76 Aligned_cols=100 Identities=20% Similarity=0.201 Sum_probs=67.3
Q ss_pred CCCCCCEEEEEccCCChhhHHHHHhhcCCCcE-EEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc--CCCCc
Q 041205 128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTH-FDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE--KLGEY 204 (535)
Q Consensus 128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~-VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~--dL~~F 204 (535)
.+.++++||-+|+|++|..++.+|++ .|++ |+++|.+++..+.+++ +| ...-+.....+...+.. ....|
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~--~G~~~vi~~~~~~~~~~~~~~----~g-a~~~i~~~~~~~~~~~~~~~~~~~ 232 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARA--LGAEDVIGVDPSPERLELAKA----LG-ADFVINSGQDDVQEIRELTSGAGA 232 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----hC-CCEEEcCCcchHHHHHHHhCCCCC
Confidence 45789999999999999999999994 5777 9999999998877764 35 21111111111111111 12369
Q ss_pred ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
|+||-.... ...+....+.|++||.+++-.
T Consensus 233 d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 233 DVAIECSGN------TAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CEEEECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 999864322 345667778999999998754
No 271
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=96.15 E-value=0.032 Score=57.65 Aligned_cols=99 Identities=19% Similarity=0.205 Sum_probs=67.0
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE--ccc----ccccc
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLT--CDI----MEVKE 199 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~--GDA----~el~~ 199 (535)
..+.++++||-+|+|++|..++.+|+. .|+ +|+++|.+++..+.|++ +| ...-+.... .+. .++..
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~--~G~~~Vi~~~~~~~~~~~a~~----~G-a~~~i~~~~~~~~~~~~v~~~~~ 253 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARM--AKASRIIAIDINPAKFELAKK----LG-ATDCVNPNDYDKPIQEVIVEITD 253 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----hC-CCeEEcccccchhHHHHHHHHhC
Confidence 456789999999999999999999993 566 79999999998887765 45 211121111 111 11111
Q ss_pred CCCCcceEEeccccCChhhHHHHHHHHHhhcccC-eEEEEEc
Q 041205 200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEG-GVLLVRS 240 (535)
Q Consensus 200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPG-GvLVvRs 240 (535)
+++|+||-.... ...+....+.+++| |+++.-.
T Consensus 254 --~g~d~vid~~G~------~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 254 --GGVDYSFECIGN------VNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred --CCCCEEEECCCC------HHHHHHHHHHhhcCCCeEEEEe
Confidence 268988864322 34677778889886 8887643
No 272
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.13 E-value=0.024 Score=60.56 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=79.6
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCC-CeEEEEcccccccc-CCCCcceEE
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEK-RMKFLTCDIMEVKE-KLGEYDCII 208 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~-rI~Fi~GDA~el~~-dL~~FDvVf 208 (535)
.+-+|||.=|| -|+=+|.+|.......+|+.-|+|+++++..+++++.-| +.+ ++++.+.||..+.. ....||+|=
T Consensus 49 ~~~~~lDalaa-sGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~-~~~~~~~v~~~DAn~ll~~~~~~fD~ID 126 (377)
T PF02005_consen 49 GPIRVLDALAA-SGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNG-LEDERIEVSNMDANVLLYSRQERFDVID 126 (377)
T ss_dssp S-EEEEETT-T-TSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT--SGCCEEEEES-HHHHHCHSTT-EEEEE
T ss_pred CCceEEecccc-ccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcc-ccCceEEEehhhHHHHhhhccccCCEEE
Confidence 45699999887 489999999853334689999999999999999999888 666 79999999977653 234699999
Q ss_pred eccccCChhhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205 209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKG 243 (535)
Q Consensus 209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~G 243 (535)
+|.. | -...+|+...+.++.||+|.+-..++
T Consensus 127 lDPf-G---Sp~pfldsA~~~v~~gGll~vTaTD~ 157 (377)
T PF02005_consen 127 LDPF-G---SPAPFLDSALQAVKDGGLLCVTATDT 157 (377)
T ss_dssp E--S-S-----HHHHHHHHHHEEEEEEEEEEE--H
T ss_pred eCCC-C---CccHhHHHHHHHhhcCCEEEEecccc
Confidence 9944 4 57899999999999999999977543
No 273
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=96.10 E-value=0.017 Score=58.88 Aligned_cols=101 Identities=16% Similarity=0.151 Sum_probs=66.0
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc---ccccccc---C
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC---DIMEVKE---K 200 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G---DA~el~~---d 200 (535)
..+.++++|+-+|+|++|+.++.+|+. .|++|+++|.+++..+.+++ +| ...-+..... |..+... .
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~--~G~~vi~~~~~~~~~~~~~~----~G-a~~~i~~~~~~~~~~~~~~~~~t~ 234 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKA--MGAAVVAIDIDPEKLEMMKG----FG-ADLTLNPKDKSAREVKKLIKAFAK 234 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHH----hC-CceEecCccccHHHHHHHHHhhcc
Confidence 346789999999999999999999994 57899999999998887764 35 2111211111 1111111 1
Q ss_pred CCCcc----eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 201 LGEYD----CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 201 L~~FD----vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
..++| +||-. . | ....+....+.|++||++++-.
T Consensus 235 ~~g~d~~~d~v~d~-~-g----~~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 235 ARGLRSTGWKIFEC-S-G----SKPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred cCCCCCCcCEEEEC-C-C----ChHHHHHHHHHHhcCCeEEEEC
Confidence 12355 55533 2 2 1346677788999999998754
No 274
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.10 E-value=0.084 Score=54.36 Aligned_cols=107 Identities=15% Similarity=0.184 Sum_probs=81.3
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc---C-------------------------
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD---D------------------------- 181 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l---G------------------------- 181 (535)
..+.+||-=||| +|--+.-+|. .|-.+.|.|.|--|+=.++-++... +
T Consensus 55 ~~~~~VLVPGsG-LGRLa~Eia~---~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~ 130 (270)
T PF07942_consen 55 RSKIRVLVPGSG-LGRLAWEIAK---LGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVR 130 (270)
T ss_pred CCccEEEEcCCC-cchHHHHHhh---ccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceE
Confidence 456899999999 7888899988 4889999999999977766654420 0
Q ss_pred --C--------cCCCeEEEEccccccccCC---CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 182 --E--------IEKRMKFLTCDIMEVKEKL---GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 182 --~--------Ls~rI~Fi~GDA~el~~dL---~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
| -..++.+..||-.++-.+. +.||+|.....+.-+++-.++++.|.++|||||+.|=-.
T Consensus 131 iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~G 202 (270)
T PF07942_consen 131 IPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFG 202 (270)
T ss_pred eCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecC
Confidence 0 1246777888877765554 469999876555446788999999999999999776543
No 275
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.09 E-value=0.031 Score=60.74 Aligned_cols=111 Identities=16% Similarity=0.142 Sum_probs=74.3
Q ss_pred cchhhHHhHHHHHHHHHHhhCC-CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCC
Q 041205 108 YYENYVKLAKLEYGALIENTGV-AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKR 186 (535)
Q Consensus 108 Yy~NYv~LirlE~~lL~~~~~l-~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~r 186 (535)
.|+|-..+-+--+..+.+...+ ..+++|+-+|+|++|......++. .|++|+.+|+|+.....|. ..| .
T Consensus 187 ~~dn~~gt~~s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~--~Ga~ViV~d~dp~ra~~A~----~~G-~--- 256 (425)
T PRK05476 187 KFDNRYGTGESLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRG--LGARVIVTEVDPICALQAA----MDG-F--- 256 (425)
T ss_pred cccccHHHHhhhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcCCchhhHHHH----hcC-C---
Confidence 3466555566666666554332 379999999999999988888873 5889999999997754443 235 2
Q ss_pred eEEEEccccccccCCCCcceEEeccccCChhhHHHHHH-HHHhhcccCeEEEEEc
Q 041205 187 MKFLTCDIMEVKEKLGEYDCIILAALAGNEEEKAKILG-HIRKYMKEGGVLLVRS 240 (535)
Q Consensus 187 I~Fi~GDA~el~~dL~~FDvVfiaALVgm~edK~~VL~-eL~rvLKPGGvLVvRs 240 (535)
++ .+..++ ...+|+|+... | . ..++. .....||+|++++.-.
T Consensus 257 -~v--~~l~ea---l~~aDVVI~aT--G---~-~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 257 -RV--MTMEEA---AELGDIFVTAT--G---N-KDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred -Ee--cCHHHH---HhCCCEEEECC--C---C-HHHHHHHHHhcCCCCCEEEEcC
Confidence 11 122222 24689998753 2 2 33565 6788899999887643
No 276
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.07 E-value=0.016 Score=55.64 Aligned_cols=101 Identities=20% Similarity=0.315 Sum_probs=61.9
Q ss_pred CEEEEEccCCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHHH------------HHhhcCCcCCCeEEEEcccccccc
Q 041205 133 KKVAFVGSGPMPLT-SIILASQHMKSTHFDNIDIDETANNLARR------------IVSSDDEIEKRMKFLTCDIMEVKE 199 (535)
Q Consensus 133 kRVLeIGSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR~------------li~~lG~Ls~rI~Fi~GDA~el~~ 199 (535)
|+|.-||.|=+|++ |.+||+ .|-+|+|+|+|++.++.-++ ++++.. -..+..|. .|..+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~---~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~-~~~~l~~t-~~~~~--- 72 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAE---KGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENV-SAGRLRAT-TDIEE--- 72 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHH---TTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHH-HTTSEEEE-SEHHH---
T ss_pred CEEEEECCCcchHHHHHHHHh---CCCEEEEEeCChHHHHHHhhccccccccchhhhhcccc-ccccchhh-hhhhh---
Confidence 68999999999964 566777 78999999999998887653 222111 02344442 33322
Q ss_pred CCCCcceEEeccccCC-------hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 200 KLGEYDCIILAALAGN-------EEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 200 dL~~FDvVfiaALVgm-------~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
.....|++|+.---.. ...-..+++.+.+++++|.++++++.
T Consensus 73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~ST 121 (185)
T PF03721_consen 73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIEST 121 (185)
T ss_dssp HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSS
T ss_pred hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccE
Confidence 1245798887532211 23357889999999999999999985
No 277
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.03 E-value=0.037 Score=56.05 Aligned_cols=103 Identities=17% Similarity=0.240 Sum_probs=65.3
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh-cCCc-C--------CCeEEEEccccccccC
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSS-DDEI-E--------KRMKFLTCDIMEVKEK 200 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~-lG~L-s--------~rI~Fi~GDA~el~~d 200 (535)
+-++|..||+|.+|.+-..... ..|.+|+.+|.+++.++.+++.+.+ .|.+ . .++++ +.|.. ..
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~--~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~---~~ 76 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFA--RKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLA---AA 76 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHH--hCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHH---HH
Confidence 3468999999998876544333 2578999999999999888774322 1200 0 12332 22221 12
Q ss_pred CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 201 LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 201 L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
..+.|+||.+ .......+..++..+.+.++++.+|+...
T Consensus 77 ~~~aDlVi~a-v~~~~~~~~~v~~~l~~~~~~~~ii~s~t 115 (311)
T PRK06130 77 VSGADLVIEA-VPEKLELKRDVFARLDGLCDPDTIFATNT 115 (311)
T ss_pred hccCCEEEEe-ccCcHHHHHHHHHHHHHhCCCCcEEEECC
Confidence 3568999986 33212347889999988887776665443
No 278
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.01 E-value=0.052 Score=59.79 Aligned_cols=103 Identities=16% Similarity=0.244 Sum_probs=75.5
Q ss_pred CCCC-EEEEEccCCChhhHHHHHhhcCCC--cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205 130 AQLK-KVAFVGSGPMPLTSIILASQHMKS--THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC 206 (535)
Q Consensus 130 ~~pk-RVLeIGSGplPlTAI~LAk~~l~G--a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv 206 (535)
.+-. +++-+|||- +.+..-. +.+ -.|+++|+|+-+++.....-.+- ..-++|...|...+.+++.+||+
T Consensus 46 ~p~~~~~l~lGCGN---S~l~e~l--y~~G~~dI~~iD~S~V~V~~m~~~~~~~---~~~~~~~~~d~~~l~fedESFdi 117 (482)
T KOG2352|consen 46 SPSDFKILQLGCGN---SELSEHL--YKNGFEDITNIDSSSVVVAAMQVRNAKE---RPEMQMVEMDMDQLVFEDESFDI 117 (482)
T ss_pred chhhceeEeecCCC---CHHHHHH--HhcCCCCceeccccHHHHHHHHhccccC---CcceEEEEecchhccCCCcceeE
Confidence 3445 999999985 5555533 222 46999999999998887665432 24689999999999998888999
Q ss_pred EEe----ccccCC------hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 207 IIL----AALAGN------EEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 207 Vfi----aALVgm------~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
|+. +++... ...+.+.+.+++++++|||+++.-+
T Consensus 118 VIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 118 VIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred EEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 984 333311 2256678999999999999866543
No 279
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.98 E-value=0.053 Score=55.22 Aligned_cols=100 Identities=20% Similarity=0.327 Sum_probs=69.5
Q ss_pred CEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhh-------cCCcC--------CCeEEEEccccc
Q 041205 133 KKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSS-------DDEIE--------KRMKFLTCDIME 196 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~-------lG~Ls--------~rI~Fi~GDA~e 196 (535)
++|..||+|.+|..--. +|. .|..|+.+|.+++.++.+++.+++ .|.+. .++++ +.|.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~---~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~-- 79 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCAR---AGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDL-- 79 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCH--
Confidence 58999999988766433 333 689999999999999987765432 22110 23333 2332
Q ss_pred cccCCCCcceEEeccccCChhhHHHHHHHHHhhc-ccCeEEEEEcc
Q 041205 197 VKEKLGEYDCIILAALAGNEEEKAKILGHIRKYM-KEGGVLLVRSA 241 (535)
Q Consensus 197 l~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvL-KPGGvLVvRsa 241 (535)
....+.|+|+-+ ...-.+-|..+|..+-+.+ +||.+|+..+.
T Consensus 80 --~~~~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~snTS 122 (286)
T PRK07819 80 --GDFADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLASNTS 122 (286)
T ss_pred --HHhCCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 234678999975 3333578999999999988 88988877664
No 280
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.98 E-value=0.033 Score=52.59 Aligned_cols=101 Identities=19% Similarity=0.247 Sum_probs=66.7
Q ss_pred CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-c-ccCCCCcc
Q 041205 128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-V-KEKLGEYD 205 (535)
Q Consensus 128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l-~~dL~~FD 205 (535)
.+.++++||..|+|++|..++.+|+. .|.+|++++.+++..+.+++. | ...-+.....+... + ......||
T Consensus 131 ~~~~~~~vli~g~~~~G~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~~----g-~~~~~~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 131 VLKPGDTVLVLGAGGVGLLAAQLAKA--AGARVIVTDRSDEKLELAKEL----G-ADHVIDYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHHh----C-CceeccCCcCCHHHHHHHhcCCCCC
Confidence 34788999999999888888888883 579999999999887776543 3 11111111111100 0 11224699
Q ss_pred eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
+|+..... ...+..+.+.|+++|.++.-..
T Consensus 204 ~vi~~~~~------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 204 VVIDAVGG------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred EEEECCCC------HHHHHHHHHhcccCCEEEEEcc
Confidence 99864322 2567778889999999987653
No 281
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.93 E-value=0.013 Score=61.86 Aligned_cols=101 Identities=17% Similarity=0.205 Sum_probs=64.8
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA 210 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia 210 (535)
++.+|+.||+|++|..++..++. .|++|+.+|.+++..+.+.. ..| ..+.....+..++...+..+|+|+..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~--lGa~V~v~d~~~~~~~~l~~---~~g---~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANG--LGATVTILDINIDRLRQLDA---EFG---GRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHH--CCCeEEEEECCHHHHHHHHH---hcC---ceeEeccCCHHHHHHHHccCCEEEEc
Confidence 57889999999999999999884 57899999999887654433 333 12222112222233334679999987
Q ss_pred ccc-CChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 211 ALA-GNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 211 ALV-gm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
..+ +. ..+.-+-++..+.|+||++|+--.
T Consensus 238 ~~~~g~-~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 238 VLIPGA-KAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cccCCC-CCCcCcCHHHHhcCCCCCEEEEEe
Confidence 544 21 111123466667899998776533
No 282
>PLN02827 Alcohol dehydrogenase-like
Probab=95.90 E-value=0.03 Score=58.36 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=66.4
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE--ccccccccC--C
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLT--CDIMEVKEK--L 201 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~--GDA~el~~d--L 201 (535)
..+.++++||-+|+|++|..++.+|+. .|+ .|+++|.+++..+.|++ +| ...-+.... .+..+.... .
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~--~G~~~vi~~~~~~~~~~~a~~----lG-a~~~i~~~~~~~~~~~~v~~~~~ 261 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKL--RGASQIIGVDINPEKAEKAKT----FG-VTDFINPNDLSEPIQQVIKRMTG 261 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEECCCHHHHHHHHH----cC-CcEEEcccccchHHHHHHHHHhC
Confidence 346789999999999999999999993 466 69999999988777754 46 311122111 111111111 1
Q ss_pred CCcceEEeccccCChhhHHHHHHHHHhhcccC-eEEEEE
Q 041205 202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEG-GVLLVR 239 (535)
Q Consensus 202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPG-GvLVvR 239 (535)
+.+|+||-.... ...+....+.+++| |++++-
T Consensus 262 ~g~d~vid~~G~------~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 262 GGADYSFECVGD------TGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred CCCCEEEECCCC------hHHHHHHHHhhccCCCEEEEE
Confidence 269999864332 33567778889998 999874
No 283
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.89 E-value=0.015 Score=58.68 Aligned_cols=101 Identities=21% Similarity=0.253 Sum_probs=67.2
Q ss_pred CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc-------CCcC---------CCeEEEEccccc
Q 041205 133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD-------DEIE---------KRMKFLTCDIME 196 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l-------G~Ls---------~rI~Fi~GDA~e 196 (535)
++|..||+|.+|.+.-.... ..|..|+.+|++++.++.+++.+++. +.+. .++++ +.|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la--~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTA--FHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHH--hcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH
Confidence 58999999988866444333 25789999999999999887664321 1010 24443 233322
Q ss_pred cccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 197 VKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 197 l~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
...+.|+|+.+.. .-.+-|..++.++.+.++++.+|+..+
T Consensus 81 ---a~~~aDlVieavp-e~~~~k~~~~~~l~~~~~~~~ii~snt 120 (287)
T PRK08293 81 ---AVKDADLVIEAVP-EDPEIKGDFYEELAKVAPEKTIFATNS 120 (287)
T ss_pred ---HhcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCCEEEECc
Confidence 2356899998633 112468999999999998888775543
No 284
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.89 E-value=0.018 Score=58.19 Aligned_cols=90 Identities=16% Similarity=0.236 Sum_probs=57.2
Q ss_pred HHHHHHhhCCCCCC--EEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh---cCCc----CCCeEEE
Q 041205 120 YGALIENTGVAQLK--KVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSS---DDEI----EKRMKFL 190 (535)
Q Consensus 120 ~~lL~~~~~l~~pk--RVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~---lG~L----s~rI~Fi 190 (535)
-+.+.+.+++.++. +|||.=+| +|-=|+++|. .|++|+++|.+|-...+-+.-+++ .... ..||+++
T Consensus 62 ~~~l~kA~Glk~~~~~~VLDaTaG-LG~Da~vlA~---~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~ 137 (234)
T PF04445_consen 62 GDPLAKAVGLKPGMRPSVLDATAG-LGRDAFVLAS---LGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLI 137 (234)
T ss_dssp GSHHHHHTT-BTTB---EEETT-T-TSHHHHHHHH---HT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEE
T ss_pred ccHHHHHhCCCCCCCCEEEECCCc-chHHHHHHHc---cCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEE
Confidence 35666767777765 99999999 8999999987 489999999999887766544332 2211 2589999
Q ss_pred Ecccccccc-CCCCcceEEecccc
Q 041205 191 TCDIMEVKE-KLGEYDCIILAALA 213 (535)
Q Consensus 191 ~GDA~el~~-dL~~FDvVfiaALV 213 (535)
++|+.+.+. ....||+||+|-+.
T Consensus 138 ~~d~~~~L~~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 138 HGDALEYLRQPDNSFDVVYFDPMF 161 (234)
T ss_dssp ES-CCCHCCCHSS--SEEEE--S-
T ss_pred cCCHHHHHhhcCCCCCEEEECCCC
Confidence 999988765 23569999999554
No 285
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.88 E-value=0.051 Score=54.82 Aligned_cols=101 Identities=25% Similarity=0.326 Sum_probs=67.0
Q ss_pred CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHh-------hcCCcC--------CCeEEEEccccc
Q 041205 132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVS-------SDDEIE--------KRMKFLTCDIME 196 (535)
Q Consensus 132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~-------~lG~Ls--------~rI~Fi~GDA~e 196 (535)
-++|.+||+|.+|..-..... ..|.+|+.+|.+++.++.+++.++ +.|.+. .++.+. .+.
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~--~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~-- 78 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAA--AAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCT-TNL-- 78 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHH--hcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEee-CCH--
Confidence 368999999988876444322 257899999999999987765433 222111 123332 222
Q ss_pred cccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 197 VKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 197 l~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
....+.|+|+.+. ..-...|..++.++...++|+.+|+...
T Consensus 79 --~~~~~aD~Vieav-~e~~~~k~~v~~~l~~~~~~~~il~s~t 119 (295)
T PLN02545 79 --EELRDADFIIEAI-VESEDLKKKLFSELDRICKPSAILASNT 119 (295)
T ss_pred --HHhCCCCEEEEcC-ccCHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 1235689999863 3223678999999999999998776544
No 286
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.86 E-value=0.042 Score=59.38 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=71.0
Q ss_pred hhhHHhHHHHHHHHHHhhC-CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeE
Q 041205 110 ENYVKLAKLEYGALIENTG-VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMK 188 (535)
Q Consensus 110 ~NYv~LirlE~~lL~~~~~-l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~ 188 (535)
+|.--+-+.-+..+.+... ...+++|+-+|+|++|......++ ..|++|+.+|.|+.....|+ ..| . .
T Consensus 172 Dn~yg~g~s~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak--~~Ga~ViV~d~dp~r~~~A~----~~G-~----~ 240 (406)
T TIGR00936 172 DNRYGTGQSTIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRAR--GMGARVIVTEVDPIRALEAA----MDG-F----R 240 (406)
T ss_pred hcccccchhHHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHh--hCcCEEEEEeCChhhHHHHH----hcC-C----E
Confidence 4433344444455555332 357999999999999999999888 36899999999997644443 345 2 2
Q ss_pred EEEccccccccCCCCcceEEeccccCChhhHHHHHH-HHHhhcccCeEEEEEc
Q 041205 189 FLTCDIMEVKEKLGEYDCIILAALAGNEEEKAKILG-HIRKYMKEGGVLLVRS 240 (535)
Q Consensus 189 Fi~GDA~el~~dL~~FDvVfiaALVgm~edK~~VL~-eL~rvLKPGGvLVvRs 240 (535)
+. +..+. ....|+|+... | ...++. +....||+|++|+.-.
T Consensus 241 v~--~leea---l~~aDVVItaT--G----~~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 241 VM--TMEEA---AKIGDIFITAT--G----NKDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred eC--CHHHH---HhcCCEEEECC--C----CHHHHHHHHHhcCCCCcEEEEEC
Confidence 21 22221 24579988742 2 244554 4778999999887643
No 287
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=95.85 E-value=0.02 Score=59.21 Aligned_cols=86 Identities=20% Similarity=0.358 Sum_probs=63.8
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE-
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII- 208 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf- 208 (535)
....-|+|+|||-. -+|.. .--.|+..|+- ..+ . +++.+|..++|.++...|+++
T Consensus 179 ~~~~vIaD~GCGEa-----kiA~~--~~~kV~SfDL~------------a~~---~--~V~~cDm~~vPl~d~svDvaV~ 234 (325)
T KOG3045|consen 179 PKNIVIADFGCGEA-----KIASS--ERHKVHSFDLV------------AVN---E--RVIACDMRNVPLEDESVDVAVF 234 (325)
T ss_pred cCceEEEecccchh-----hhhhc--cccceeeeeee------------cCC---C--ceeeccccCCcCccCcccEEEe
Confidence 45678999999952 23321 23468888764 122 2 457799999998888899665
Q ss_pred eccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
+-++.| .+-..++.++.|+|+|||.+-+-..
T Consensus 235 CLSLMg--tn~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 235 CLSLMG--TNLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred eHhhhc--ccHHHHHHHHHHHhccCceEEEEeh
Confidence 556666 7999999999999999999988654
No 288
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=95.85 E-value=0.042 Score=55.83 Aligned_cols=92 Identities=16% Similarity=0.202 Sum_probs=60.2
Q ss_pred CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205 132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA 211 (535)
Q Consensus 132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA 211 (535)
-++|+.||+|.+|.+............+|+++|.+++..+.++ ..| ... . ...+.. ......|+|+++.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~----~~g-~~~--~-~~~~~~---~~~~~aDvViiav 74 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR----ELG-LGD--R-VTTSAA---EAVKGADLVILCV 74 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH----hCC-CCc--e-ecCCHH---HHhcCCCEEEECC
Confidence 3689999999888765444332111248999999999877665 345 211 1 122221 1235689999975
Q ss_pred ccCChhhHHHHHHHHHhhcccCeEEE
Q 041205 212 LAGNEEEKAKILGHIRKYMKEGGVLL 237 (535)
Q Consensus 212 LVgm~edK~~VL~eL~rvLKPGGvLV 237 (535)
-. .....++..+...++||++|+
T Consensus 75 p~---~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 75 PV---GASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred CH---HHHHHHHHHHHhhCCCCCEEE
Confidence 55 345778888888899988664
No 289
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=95.81 E-value=0.028 Score=56.89 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=66.2
Q ss_pred CCCCCCEEEEEccCCChhhHHHHHhhcCCCcE-EEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc--CCCCc
Q 041205 128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTH-FDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE--KLGEY 204 (535)
Q Consensus 128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~-VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~--dL~~F 204 (535)
.+.++++||-.|+|++|..++.+|+. .|++ |+++|.+++..+.+++ .| ...-+.....+..++.. ....+
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~--~G~~~v~~~~~~~~~~~~~~~----~G-a~~~i~~~~~~~~~~~~~~~~~~~ 229 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVA--LGAKSVTAIDINSEKLALAKS----LG-AMQTFNSREMSAPQIQSVLRELRF 229 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEECCCHHHHHHHHH----cC-CceEecCcccCHHHHHHHhcCCCC
Confidence 45688999999999999999999994 5776 7999999998877654 45 21111111111111111 11358
Q ss_pred ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
|.+++++. | -...+....+.|++||.+++-.
T Consensus 230 d~~v~d~~-G----~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 230 DQLILETA-G----VPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred CeEEEECC-C----CHHHHHHHHHHhhcCCEEEEEc
Confidence 84555433 3 1457788889999999998754
No 290
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=95.80 E-value=0.063 Score=55.28 Aligned_cols=101 Identities=20% Similarity=0.165 Sum_probs=67.3
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc--ccccccc--CC
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC--DIMEVKE--KL 201 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G--DA~el~~--dL 201 (535)
..+.++++||-+|+|++|..++.+|+. .|+ .|+++|.+++..+.+++ +| ...-+..... |..+... ..
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~--~G~~~vi~~~~~~~~~~~~~~----lG-a~~~i~~~~~~~~~~~~v~~~~~ 254 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKA--AGASRIIGIDINPDKFELAKK----FG-ATDCVNPKDHDKPIQQVLVEMTD 254 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----cC-CCEEEcccccchHHHHHHHHHhC
Confidence 346789999999999999999999994 577 79999999998877764 46 2111211111 1111110 11
Q ss_pred CCcceEEeccccCChhhHHHHHHHHHhhcccC-eEEEEEc
Q 041205 202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEG-GVLLVRS 240 (535)
Q Consensus 202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPG-GvLVvRs 240 (535)
+++|+||-.... ...+....+.+++| |++++-.
T Consensus 255 ~g~d~vid~~g~------~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 255 GGVDYTFECIGN------VKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred CCCcEEEECCCC------hHHHHHHHHhhccCCCeEEEEc
Confidence 369999864221 34677778889887 8887653
No 291
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=95.78 E-value=0.99 Score=46.56 Aligned_cols=98 Identities=21% Similarity=0.106 Sum_probs=58.8
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
.++++|+.||+|++|......... ..+..|+.+|.+++.. +.+.+..| . ..+.. .++......+|+||.
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~-~g~~~V~v~~r~~~ra---~~la~~~g-~----~~~~~--~~~~~~l~~aDvVi~ 244 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAA-KGVAEITIANRTYERA---EELAKELG-G----NAVPL--DELLELLNEADVVIS 244 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHH-cCCCEEEEEeCCHHHH---HHHHHHcC-C----eEEeH--HHHHHHHhcCCEEEE
Confidence 468999999999988776665552 2346799999998643 33444456 2 12221 122223456899998
Q ss_pred ccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
+... +....++..+.+....++.++++-+
T Consensus 245 at~~---~~~~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 245 ATGA---PHYAKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred CCCC---CchHHHHHHHHhhCCCCCeEEEEeC
Confidence 7554 2334445554443333577777654
No 292
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=95.78 E-value=0.073 Score=55.98 Aligned_cols=103 Identities=16% Similarity=0.234 Sum_probs=67.3
Q ss_pred CCCCCCEEEEEc-cCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHHHhhc----CCcCCCeEEEE----cccccc
Q 041205 128 GVAQLKKVAFVG-SGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRIVSSD----DEIEKRMKFLT----CDIMEV 197 (535)
Q Consensus 128 ~l~~pkRVLeIG-SGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~li~~l----G~Ls~rI~Fi~----GDA~el 197 (535)
.+.++++|+-+| +|++|..++.+|+...-| .+|+++|.+++..+.|+++.... | ....++. .|..+.
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~G---a~~~~i~~~~~~~~~~~ 248 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRG---IELLYVNPATIDDLHAT 248 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccC---ceEEEECCCccccHHHH
Confidence 457789999997 799999999999942123 37999999999999998864322 3 1111221 111111
Q ss_pred c---cCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205 198 K---EKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 198 ~---~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
. .....||+|+..... ...+....+.++++|.+++-
T Consensus 249 v~~~t~g~g~D~vid~~g~------~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 249 LMELTGGQGFDDVFVFVPV------PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHHHhCCCCCCEEEEcCCC------HHHHHHHHHHhccCCeEEEE
Confidence 1 112359999875322 35677888899988866553
No 293
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.72 E-value=0.035 Score=55.89 Aligned_cols=102 Identities=16% Similarity=0.219 Sum_probs=66.5
Q ss_pred CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh-------cCCcC--------CCeEEEEcccccc
Q 041205 133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSS-------DDEIE--------KRMKFLTCDIMEV 197 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~-------lG~Ls--------~rI~Fi~GDA~el 197 (535)
++|..||+|.+|.+.-.... ..|..|+.+|+|++.++.+.+.+.. .|.+. .++++ +.|..
T Consensus 2 ~~V~VIG~G~mG~~iA~~la--~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~-- 76 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFA--VSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLK-- 76 (288)
T ss_pred cEEEEECccHHHHHHHHHHH--hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHH--
Confidence 58999999998877433322 2578999999999999988764322 11110 12333 22321
Q ss_pred ccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 198 KEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 198 ~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
....+.|+|+.+-.- -..-|..++.++.+.++||.+|++...
T Consensus 77 -~~~~~aD~Vi~avpe-~~~~k~~~~~~l~~~~~~~~il~~~tS 118 (288)
T PRK09260 77 -AAVADADLVIEAVPE-KLELKKAVFETADAHAPAECYIATNTS 118 (288)
T ss_pred -HhhcCCCEEEEeccC-CHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 223568999986332 134478899999999999988766553
No 294
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=95.72 E-value=0.056 Score=55.58 Aligned_cols=99 Identities=23% Similarity=0.254 Sum_probs=66.6
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc--c----cccccc
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC--D----IMEVKE 199 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G--D----A~el~~ 199 (535)
..+.++++||-+|+|++|..++.+|+. .|+ +|+++|.+++..+.+++ +| ...-+....- + +.++.
T Consensus 180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~--~G~~~Vi~~~~~~~~~~~~~~----~g-a~~~i~~~~~~~~~~~~~~~~~- 251 (365)
T cd08277 180 AKVEPGSTVAVFGLGAVGLSAIMGAKI--AGASRIIGVDINEDKFEKAKE----FG-ATDFINPKDSDKPVSEVIREMT- 251 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----cC-CCcEeccccccchHHHHHHHHh-
Confidence 356789999999999999999999994 467 79999999998887754 45 2111111110 0 11111
Q ss_pred CCCCcceEEeccccCChhhHHHHHHHHHhhcccC-eEEEEEc
Q 041205 200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEG-GVLLVRS 240 (535)
Q Consensus 200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPG-GvLVvRs 240 (535)
. .++|+||-.. | ....+....+.|++| |.+++-.
T Consensus 252 ~-~g~d~vid~~--g----~~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 252 G-GGVDYSFECT--G----NADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred C-CCCCEEEECC--C----ChHHHHHHHHhcccCCCEEEEEc
Confidence 2 3699988532 2 134677788899886 8887754
No 295
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=95.68 E-value=0.058 Score=54.32 Aligned_cols=101 Identities=21% Similarity=0.208 Sum_probs=68.6
Q ss_pred CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205 128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI 207 (535)
Q Consensus 128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV 207 (535)
.+.++++||-.|+|++|..++.+|+. .|.+|+.++.+++..+.+++ +| ...-+.....+..+....++++|+|
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~--~G~~vi~~~~~~~~~~~~~~----~g-~~~~i~~~~~~~~~~~~~~~~~d~v 232 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAK--MGFRTVAISRGSDKADLARK----LG-AHHYIDTSKEDVAEALQELGGAKLI 232 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHH----cC-CcEEecCCCccHHHHHHhcCCCCEE
Confidence 56788999999999999999999994 57899999999887776654 45 2111111111211111223468988
Q ss_pred EeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
+-. . | ....+....+.|++||.++.-..
T Consensus 233 i~~-~-g----~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 233 LAT-A-P----NAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred EEC-C-C----chHHHHHHHHHcccCCEEEEEec
Confidence 843 2 1 13478888999999999987543
No 296
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=95.65 E-value=0.072 Score=54.67 Aligned_cols=101 Identities=16% Similarity=0.149 Sum_probs=66.2
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc--ccccccc--CC
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC--DIMEVKE--KL 201 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G--DA~el~~--dL 201 (535)
..+.++++||-+|+|++|..++.+|+. .|+ +|+++|.+++..+.+++ +| ...-+..... +..+... ..
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~--~G~~~vi~~~~~~~~~~~~~~----~G-a~~~i~~~~~~~~~~~~v~~~~~ 255 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARI--RGASRIIGVDLNPSKFEQAKK----FG-VTEFVNPKDHDKPVQEVIAEMTG 255 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----cC-CceEEcccccchhHHHHHHHHhC
Confidence 456789999999999999999999993 566 89999999998877754 55 2111111110 1111000 11
Q ss_pred CCcceEEeccccCChhhHHHHHHHHHhhcccC-eEEEEEc
Q 041205 202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEG-GVLLVRS 240 (535)
Q Consensus 202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPG-GvLVvRs 240 (535)
+.+|+|+-.... ...+....+.+++| |++++-.
T Consensus 256 ~~~d~vid~~G~------~~~~~~~~~~~~~~~g~~v~~g 289 (369)
T cd08301 256 GGVDYSFECTGN------IDAMISAFECVHDGWGVTVLLG 289 (369)
T ss_pred CCCCEEEECCCC------hHHHHHHHHHhhcCCCEEEEEC
Confidence 258988753221 34666677889996 8887754
No 297
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.65 E-value=0.084 Score=54.90 Aligned_cols=108 Identities=21% Similarity=0.218 Sum_probs=72.6
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcc-ccc-ccc--CC
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD-IME-VKE--KL 201 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GD-A~e-l~~--dL 201 (535)
..+.++.+||.+|+|++|..++.+|+. .|. +|+++|.+++..+.+++.. | . ..+.+...+ ..+ +.. ..
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~--~g~~~vi~~~~~~~~~~~~~~~~---~-~-~vi~~~~~~~~~~~l~~~~~~ 252 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKL--LGAERVIAIDRVPERLEMARSHL---G-A-ETINFEEVDDVVEALRELTGG 252 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHHcC---C-c-EEEcCCcchHHHHHHHHHcCC
Confidence 445788999999999999999999994 455 6999999999988888752 3 1 112222221 111 111 11
Q ss_pred CCcceEEeccccC---------------ChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 202 GEYDCIILAALAG---------------NEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 202 ~~FDvVfiaALVg---------------m~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
..+|+||-...-. ...++...+..+.+.|+|||.++.-..
T Consensus 253 ~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 253 RGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 2589887642110 013456789999999999999988754
No 298
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=95.65 E-value=0.065 Score=53.66 Aligned_cols=101 Identities=15% Similarity=0.157 Sum_probs=67.3
Q ss_pred hhCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc-ccccccc--CC
Q 041205 126 NTGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC-DIMEVKE--KL 201 (535)
Q Consensus 126 ~~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G-DA~el~~--dL 201 (535)
...+.++++||-.| +|++|..++.+|+. .|++|++++.+++..+.+++ +| ...-+..... +..+... ..
T Consensus 133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~--~G~~Vi~~~~s~~~~~~~~~----lG-a~~vi~~~~~~~~~~~~~~~~~ 205 (325)
T TIGR02825 133 ICGVKGGETVMVNAAAGAVGSVVGQIAKL--KGCKVVGAAGSDEKVAYLKK----LG-FDVAFNYKTVKSLEETLKKASP 205 (325)
T ss_pred HhCCCCCCEEEEeCCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH----cC-CCEEEeccccccHHHHHHHhCC
Confidence 34567899999999 69999999999994 68899999999887766654 45 2111111111 1111111 11
Q ss_pred CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+++|+||-. +| . ..+....+.|++||+++.-.
T Consensus 206 ~gvdvv~d~--~G---~--~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 206 DGYDCYFDN--VG---G--EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred CCeEEEEEC--CC---H--HHHHHHHHHhCcCcEEEEec
Confidence 359998842 33 1 24578889999999998754
No 299
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=95.53 E-value=0.066 Score=55.08 Aligned_cols=101 Identities=13% Similarity=0.057 Sum_probs=67.6
Q ss_pred hCCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc-cccccccC--CC
Q 041205 127 TGVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC-DIMEVKEK--LG 202 (535)
Q Consensus 127 ~~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G-DA~el~~d--L~ 202 (535)
..+.++++||-.|+ |++|..++.+|+. .|++|++++.+++..+.+++ .+| ...-+..... |..+.... .+
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~--~G~~Vi~~~~~~~k~~~~~~---~lG-a~~vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKL--HGCYVVGSAGSSQKVDLLKN---KLG-FDEAFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHH--cCCEEEEEcCCHHHHHHHHH---hcC-CCEEEECCCcccHHHHHHHHCCC
Confidence 45678999999998 9999999999994 58999999999887666542 345 2211221111 22111111 13
Q ss_pred CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
++|+||-. +| ...+....+.|++||.+++-.
T Consensus 228 gvD~v~d~--vG-----~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 228 GIDIYFDN--VG-----GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred CcEEEEEC--CC-----HHHHHHHHHHhccCCEEEEEC
Confidence 69988842 33 136788889999999998743
No 300
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.51 E-value=0.04 Score=58.28 Aligned_cols=101 Identities=18% Similarity=0.187 Sum_probs=81.1
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
-++.+|.-||.|-.|+-+--+|- .-|+.|+-+|+|.+++..-...+ ..|+....-+..++......+|+|+-
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~--glgA~Vtild~n~~rl~~ldd~f------~~rv~~~~st~~~iee~v~~aDlvIg 237 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI--GLGADVTILDLNIDRLRQLDDLF------GGRVHTLYSTPSNIEEAVKKADLVIG 237 (371)
T ss_pred CCCccEEEECCccccchHHHHHh--ccCCeeEEEecCHHHHhhhhHhh------CceeEEEEcCHHHHHHHhhhccEEEE
Confidence 56789999999999999999987 47899999999998876544432 24677777777777667778999999
Q ss_pred ccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205 210 AALAGNEEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 210 aALVgm~edK~~VL~eL~rvLKPGGvLVv 238 (535)
+-++.-...+.-+.+++.+.|+||++++=
T Consensus 238 aVLIpgakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 238 AVLIPGAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred EEEecCCCCceehhHHHHHhcCCCcEEEE
Confidence 87775445667789999999999998753
No 301
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=95.46 E-value=0.11 Score=53.45 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=64.4
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII 208 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf 208 (535)
..++++|+-+|+|++|..++.+|+. .|++|+.++.+++....+. +++| . +. .+...+...+......+|+||
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~--~G~~vi~~~~~~~~~~~~~---~~~G-a-~~-~i~~~~~~~~~~~~~~~D~vi 249 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKA--MGHHVTVISSSDKKREEAL---EHLG-A-DD-YLVSSDAAEMQEAADSLDYII 249 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHH---HhcC-C-cE-EecCCChHHHHHhcCCCcEEE
Confidence 3578999999999999999999994 5788999998887644432 3456 2 11 111111111111123589888
Q ss_pred eccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
-.... ...+....+.+++||+++.-.
T Consensus 250 d~~g~------~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 250 DTVPV------FHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred ECCCc------hHHHHHHHHHhccCCEEEEEC
Confidence 54221 346777888999999988754
No 302
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=95.44 E-value=0.071 Score=52.76 Aligned_cols=100 Identities=13% Similarity=0.080 Sum_probs=67.3
Q ss_pred hhCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc--CCC
Q 041205 126 NTGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE--KLG 202 (535)
Q Consensus 126 ~~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~--dL~ 202 (535)
...+.++++||-.| +|++|..++.+|+. .|++|++++.+++..+.+++ +| ...-+.....|..+... ...
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~--~G~~vi~~~~s~~~~~~l~~----~G-a~~vi~~~~~~~~~~v~~~~~~ 210 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKI--KGCKVIGCAGSDDKVAWLKE----LG-FDAVFNYKTVSLEEALKEAAPD 210 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH----cC-CCEEEeCCCccHHHHHHHHCCC
Confidence 34567899999999 79999999999994 68899999999987776654 45 21112211112111111 114
Q ss_pred CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205 203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
++|+||- .+| . ..+....+.+++||.++.-
T Consensus 211 gvd~vld--~~g---~--~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 211 GIDCYFD--NVG---G--EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred CcEEEEE--CCC---H--HHHHHHHHhhccCCEEEEE
Confidence 5998884 333 1 4578889999999999874
No 303
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.42 E-value=0.21 Score=50.24 Aligned_cols=142 Identities=15% Similarity=0.221 Sum_probs=90.6
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC----C
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL----G 202 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL----~ 202 (535)
+++.++++||.+|.- -|.|.-.++. ..+.+.|.+|+.++.....=-.++++ ..||-=+.+||.. |... .
T Consensus 72 ~pi~~g~~VLYLGAa-sGTTvSHVSD-Iv~~G~iYaVEfs~R~~reLl~~a~~----R~Ni~PIL~DA~~-P~~Y~~~Ve 144 (231)
T COG1889 72 FPIKEGSKVLYLGAA-SGTTVSHVSD-IVGEGRIYAVEFSPRPMRELLDVAEK----RPNIIPILEDARK-PEKYRHLVE 144 (231)
T ss_pred CCcCCCCEEEEeecc-CCCcHhHHHh-ccCCCcEEEEEecchhHHHHHHHHHh----CCCceeeecccCC-cHHhhhhcc
Confidence 467899999999995 6888888887 56678999999999886544444444 2577778899853 3322 4
Q ss_pred CcceEEeccccCChhhHHH-HHHHHHhhcccCeEEEEEc-ccccccccCCC------Ccc-ccCCcEEEEEEc--CCCcc
Q 041205 203 EYDCIILAALAGNEEEKAK-ILGHIRKYMKEGGVLLVRS-AKGARAFLYPV------VEH-ELFDFKVLSIFH--PTNDV 271 (535)
Q Consensus 203 ~FDvVfiaALVgm~edK~~-VL~eL~rvLKPGGvLVvRs-a~GlR~fLYP~------Vdp-dl~GFeil~v~h--P~~eV 271 (535)
..|+||.|-.- ++-.+ +..+....||+||.+++-- +.....---|. +.. .-.||++....+ |.+.-
T Consensus 145 ~VDviy~DVAQ---p~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LePye~D 221 (231)
T COG1889 145 KVDVIYQDVAQ---PNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEPYEKD 221 (231)
T ss_pred cccEEEEecCC---chHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccCCcccc
Confidence 58999987333 34444 4566788999999554421 22211111121 111 236899998777 76643
Q ss_pred eeeeEEEe
Q 041205 272 INSVVLLQ 279 (535)
Q Consensus 272 INSVVvAR 279 (535)
...|+++
T Consensus 222 -H~~i~~~ 228 (231)
T COG1889 222 -HALIVAK 228 (231)
T ss_pred -eEEEEEe
Confidence 2244444
No 304
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=95.40 E-value=0.11 Score=52.88 Aligned_cols=110 Identities=10% Similarity=0.053 Sum_probs=71.1
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhc----CCCcEEEEEeC--------------------------ChhHHHHHHHHHhh
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQH----MKSTHFDNIDI--------------------------DETANNLARRIVSS 179 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~----l~Ga~VtGIDI--------------------------DpeAIelAR~li~~ 179 (535)
.-+--|+|.||- -|.|+++++.-+ .++-+|.+.|- .....+..++++.+
T Consensus 73 ~vpGdivE~GV~-rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~ 151 (248)
T PF05711_consen 73 DVPGDIVECGVW-RGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFAR 151 (248)
T ss_dssp TS-SEEEEE--T-TSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCC
T ss_pred CCCeEEEEEeeC-CCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHH
Confidence 567799999997 566666664311 24556777762 11256667777888
Q ss_pred cCCcCCCeEEEEccccccccCC--CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEccc
Q 041205 180 DDEIEKRMKFLTCDIMEVKEKL--GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAK 242 (535)
Q Consensus 180 lG~Ls~rI~Fi~GDA~el~~dL--~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~ 242 (535)
.|.+.+++.|+.|...+.+... ..+-++.+|..+ -+.-..+|+.++..|.|||+|++++++
T Consensus 152 ~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl--YesT~~aLe~lyprl~~GGiIi~DDY~ 214 (248)
T PF05711_consen 152 YGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL--YESTKDALEFLYPRLSPGGIIIFDDYG 214 (248)
T ss_dssp TTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---S--HHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred cCCCcccEEEECCcchhhhccCCCccEEEEEEeccc--hHHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence 8855679999999987655432 346666676544 467889999999999999999999863
No 305
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=95.40 E-value=0.072 Score=55.73 Aligned_cols=96 Identities=17% Similarity=0.156 Sum_probs=63.5
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhH-HHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETA-NNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII 208 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeA-IelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf 208 (535)
.++++|+-.|+|++|..++.+|+. .|++|+.+|.+++. .+.+ +.+| ...-+.. .+...+....+.+|+||
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~--~Ga~Vi~~~~~~~~~~~~a----~~lG-a~~~i~~--~~~~~v~~~~~~~D~vi 247 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKA--FGLRVTVISRSSEKEREAI----DRLG-ADSFLVT--TDSQKMKEAVGTMDFII 247 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHH--cCCeEEEEeCChHHhHHHH----HhCC-CcEEEcC--cCHHHHHHhhCCCcEEE
Confidence 478999999999999999999994 58899999987653 3333 4466 3111111 11111111123589998
Q ss_pred eccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
-.... ...+....+.+++||.++.-.
T Consensus 248 d~~G~------~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 248 DTVSA------EHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred ECCCc------HHHHHHHHHhhcCCCEEEEEc
Confidence 64322 346778888999999998754
No 306
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.38 E-value=0.05 Score=57.02 Aligned_cols=80 Identities=18% Similarity=0.132 Sum_probs=51.9
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc------CCC
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE------KLG 202 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~------dL~ 202 (535)
..++..++|-=-|.+|-|..+|.+ +++++|+|+|.|+++++.|++.+...+ +++.|+.++-.++.. ...
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~--~~~~~li~~DrD~~a~~~a~~~l~~~~---~r~~~~~~~F~~l~~~l~~~~~~~ 92 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEK--LPNGRLIGIDRDPEALERAKERLKKFD---DRFIFIHGNFSNLDEYLKELNGIN 92 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT---TT-EEEEEES-HHHHHHHHCCTCCCC---TTEEEEES-GGGHHHHHHHTTTTS
T ss_pred cCCCceEEeecCCcHHHHHHHHHh--CCCCeEEEecCCHHHHHHHHHHHhhcc---ceEEEEeccHHHHHHHHHHccCCC
Confidence 467788899766667999988865 677999999999999999998877654 799999888654332 112
Q ss_pred CcceEEecccc
Q 041205 203 EYDCIILAALA 213 (535)
Q Consensus 203 ~FDvVfiaALV 213 (535)
.+|-|++|-.+
T Consensus 93 ~~dgiL~DLGv 103 (310)
T PF01795_consen 93 KVDGILFDLGV 103 (310)
T ss_dssp -EEEEEEE-S-
T ss_pred ccCEEEEcccc
Confidence 35555555443
No 307
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=95.28 E-value=0.059 Score=54.55 Aligned_cols=101 Identities=18% Similarity=0.241 Sum_probs=68.1
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-ccc--CCC
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VKE--KLG 202 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~~--dL~ 202 (535)
..+.++++||-.|+|++|..++.+|+. .|. .|+++|.+++..+.+++ .| ...-+.....+..+ +.. .-.
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~--~G~~~v~~~~~~~~~~~~~~~----~g-~~~~v~~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARL--RGAGRIIAVGSRPNRVELAKE----YG-ATDIVDYKNGDVVEQILKLTGGK 234 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----cC-CceEecCCCCCHHHHHHHHhCCC
Confidence 346788999999999999999999994 466 69999999988877764 45 21112211111111 111 113
Q ss_pred CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
.+|+|+-...- ...+..+.+.|+++|+++.-.
T Consensus 235 ~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 235 GVDAVIIAGGG------QDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CCcEEEECCCC------HHHHHHHHHHhhcCCEEEEec
Confidence 59988864221 356788899999999998643
No 308
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=95.28 E-value=0.02 Score=58.45 Aligned_cols=103 Identities=12% Similarity=0.060 Sum_probs=78.7
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA 210 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia 210 (535)
.-..+++|||| .|.-+-.+-.+ .-.+++-+|-+..|++-++..- +. +-.+...++|-..+++..+.||+|+.+
T Consensus 72 ~fp~a~diGcs-~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~q--dp--~i~~~~~v~DEE~Ldf~ens~DLiisS 144 (325)
T KOG2940|consen 72 SFPTAFDIGCS-LGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDAQ--DP--SIETSYFVGDEEFLDFKENSVDLIISS 144 (325)
T ss_pred hCcceeecccc-hhhhhHHHHhc--chhheeeeecchHHHHHhhccC--CC--ceEEEEEecchhcccccccchhhhhhh
Confidence 34589999998 56655555331 2357899999999998877541 12 235778889977777777889999987
Q ss_pred cccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 211 ALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 211 ALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
-..|+.-+-...+.+|+..|||+|.++-.-
T Consensus 145 lslHW~NdLPg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 145 LSLHWTNDLPGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred hhhhhhccCchHHHHHHHhcCCCccchhHH
Confidence 666777888999999999999999998643
No 309
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=95.26 E-value=0.1 Score=52.05 Aligned_cols=102 Identities=17% Similarity=0.263 Sum_probs=68.8
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE-ccc-cccccCCCCc
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLT-CDI-MEVKEKLGEY 204 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~-GDA-~el~~dL~~F 204 (535)
..+.++.+||-.|+|++|..++.+|+. ..|++|++++.+++..+.+++ .| ...-+.... .+. ..+....+++
T Consensus 158 ~~~~~g~~vlV~g~g~vG~~~~~la~~-~~g~~v~~~~~~~~~~~~~~~----~g-~~~v~~~~~~~~~~~~v~~~~~~~ 231 (338)
T PRK09422 158 SGIKPGQWIAIYGAGGLGNLALQYAKN-VFNAKVIAVDINDDKLALAKE----VG-ADLTINSKRVEDVAKIIQEKTGGA 231 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHH-hCCCeEEEEeCChHHHHHHHH----cC-CcEEecccccccHHHHHHHhcCCC
Confidence 356789999999999999999999993 348999999999998877754 45 211111100 110 1111112358
Q ss_pred ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
|+|++++.- ...+....+.+++||.++.-.
T Consensus 232 d~vi~~~~~------~~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 232 HAAVVTAVA------KAAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred cEEEEeCCC------HHHHHHHHHhccCCCEEEEEe
Confidence 877776432 346888899999999988753
No 310
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.23 E-value=0.021 Score=63.05 Aligned_cols=101 Identities=13% Similarity=0.204 Sum_probs=63.5
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEE---eCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNI---DIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC 206 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGI---DIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv 206 (535)
..-+.+||||||...+.|-++.+ +..+..+ |..+..++.|- +-| +-.-+... |. ..++++.+.||+
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r----~V~t~s~a~~d~~~~qvqfal----eRG-vpa~~~~~-~s-~rLPfp~~~fDm 184 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLER----NVTTMSFAPNDEHEAQVQFAL----ERG-VPAMIGVL-GS-QRLPFPSNAFDM 184 (506)
T ss_pred CceEEEEeccceeehhHHHHhhC----CceEEEcccccCCchhhhhhh----hcC-cchhhhhh-cc-ccccCCccchhh
Confidence 34478999999987777766543 3333222 44444444443 234 21111111 11 357888889999
Q ss_pred EEec-cccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 207 IILA-ALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 207 Vfia-ALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
|-.+ .++.+.+.-.-+|-++-|+|+|||+++...+
T Consensus 185 vHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 185 VHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred hhcccccccchhcccceeehhhhhhccCceEEecCC
Confidence 9966 5555545556789999999999999988654
No 311
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=95.18 E-value=0.092 Score=52.86 Aligned_cols=89 Identities=13% Similarity=0.080 Sum_probs=58.6
Q ss_pred CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccc
Q 041205 133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAAL 212 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaAL 212 (535)
++|..||+|.+|.+-..... ..|.+|+++|.+++..+.+.+ .| . +.....+. ....+.|+||++.-
T Consensus 1 m~I~IIG~G~mG~sla~~L~--~~g~~V~~~d~~~~~~~~a~~----~g-~---~~~~~~~~----~~~~~aDlVilavp 66 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLR--SLGHTVYGVSRRESTCERAIE----RG-L---VDEASTDL----SLLKDCDLVILALP 66 (279)
T ss_pred CeEEEEeecHHHHHHHHHHH--HCCCEEEEEECCHHHHHHHHH----CC-C---cccccCCH----hHhcCCCEEEEcCC
Confidence 47999999988876444333 247799999999998877654 34 1 11111121 12356899999754
Q ss_pred cCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205 213 AGNEEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 213 Vgm~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
. ..-.++++++...++||.++ +.
T Consensus 67 ~---~~~~~~~~~l~~~l~~~~ii-~d 89 (279)
T PRK07417 67 I---GLLLPPSEQLIPALPPEAIV-TD 89 (279)
T ss_pred H---HHHHHHHHHHHHhCCCCcEE-Ee
Confidence 4 34566788888888887554 44
No 312
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=95.17 E-value=0.082 Score=53.52 Aligned_cols=102 Identities=16% Similarity=0.166 Sum_probs=69.0
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-cc--cCCC
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VK--EKLG 202 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~--~dL~ 202 (535)
..+.++.+||-.|+|++|..++.+|+. .|+ +|+.++.+++..+.+++ .| ...-+.....+..+ +. ....
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~--~G~~~v~~~~~~~~~~~~~~~----~g-a~~~i~~~~~~~~~~l~~~~~~~ 240 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALKA--AGASKIIVSEPSEARRELAEE----LG-ATIVLDPTEVDVVAEVRKLTGGG 240 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----hC-CCEEECCCccCHHHHHHHHhCCC
Confidence 456788999999999999999999994 577 89999999998887765 35 21111112222111 11 1113
Q ss_pred CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
.+|+|+-...- ...+....+.|++||.++.-..
T Consensus 241 ~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 241 GVDVSFDCAGV------QATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CCCEEEECCCC------HHHHHHHHHhccCCCEEEEEcc
Confidence 49999864322 2367788889999999987543
No 313
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.15 E-value=0.049 Score=58.51 Aligned_cols=107 Identities=14% Similarity=0.206 Sum_probs=72.1
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC---CCcc
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL---GEYD 205 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL---~~FD 205 (535)
-.|++|||||-||+ |++|-+....|+- .++-++.++..-+....+.+..+ . ........|+..-..++ +.||
T Consensus 112 fapqsiLDvG~GPg--tgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~-t-~~td~r~s~vt~dRl~lp~ad~yt 187 (484)
T COG5459 112 FAPQSILDVGAGPG--TGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS-T-EKTDWRASDVTEDRLSLPAADLYT 187 (484)
T ss_pred cCcchhhccCCCCc--hhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc-c-ccCCCCCCccchhccCCCccceee
Confidence 46788999999964 7777766555643 46667888888888877777665 2 33445555554322222 2488
Q ss_pred eEEec-cccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 206 CIILA-ALAGN--EEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 206 vVfia-ALVgm--~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+|++. -+++| ..+-...+++++..+.|||.|++-.
T Consensus 188 l~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 188 LAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred hhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEe
Confidence 88754 44455 2333558999999999999988865
No 314
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=95.13 E-value=0.022 Score=59.20 Aligned_cols=96 Identities=16% Similarity=0.142 Sum_probs=74.6
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
..+.-++++|||-+=++. ..|.+.++|.|++...+..|++ .|. + ....+|+..++.....||.++.
T Consensus 44 ~~gsv~~d~gCGngky~~------~~p~~~~ig~D~c~~l~~~ak~----~~~--~--~~~~ad~l~~p~~~~s~d~~ls 109 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG------VNPLCLIIGCDLCTGLLGGAKR----SGG--D--NVCRADALKLPFREESFDAALS 109 (293)
T ss_pred CCcceeeecccCCcccCc------CCCcceeeecchhhhhcccccc----CCC--c--eeehhhhhcCCCCCCccccchh
Confidence 458999999999643332 1378899999999988877663 331 1 4567999999988888999997
Q ss_pred ccccCC---hhhHHHHHHHHHhhcccCeEEEEE
Q 041205 210 AALAGN---EEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 210 aALVgm---~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
-|..|+ ......+++++.++++|||-..+-
T Consensus 110 iavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 110 IAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 666653 788899999999999999976553
No 315
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.05 E-value=0.085 Score=54.24 Aligned_cols=89 Identities=12% Similarity=0.062 Sum_probs=61.1
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA 210 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia 210 (535)
.+++|+-||.|.+|.+.+..+++ .|++|+.+|.+++..+.++ ..| . +++. ..++......+|+||..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~--~Ga~V~v~~r~~~~~~~~~----~~G-~----~~~~--~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKA--LGANVTVGARKSAHLARIT----EMG-L----SPFH--LSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHH----HcC-C----eeec--HHHHHHHhCCCCEEEEC
Confidence 68999999999999999888874 5899999999988655543 456 2 2221 11223334679999986
Q ss_pred cccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205 211 ALAGNEEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 211 ALVgm~edK~~VL~eL~rvLKPGGvLVv 238 (535)
.-.+ -+-+...+.|+||++++-
T Consensus 218 ~p~~------~i~~~~l~~~~~g~vIID 239 (296)
T PRK08306 218 IPAL------VLTKEVLSKMPPEALIID 239 (296)
T ss_pred CChh------hhhHHHHHcCCCCcEEEE
Confidence 3221 233556678999887653
No 316
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.92 E-value=0.18 Score=55.28 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=62.7
Q ss_pred CCEEEEEccCCChhhH-HHHHhhcCCCcEEEEEeCChhHHHHHHHHHh-------hcCC--c--CCCeEEEEcccccccc
Q 041205 132 LKKVAFVGSGPMPLTS-IILASQHMKSTHFDNIDIDETANNLARRIVS-------SDDE--I--EKRMKFLTCDIMEVKE 199 (535)
Q Consensus 132 pkRVLeIGSGplPlTA-I~LAk~~l~Ga~VtGIDIDpeAIelAR~li~-------~lG~--L--s~rI~Fi~GDA~el~~ 199 (535)
-++|.+||+|.+|.+- ..++. .|..|+.+|++++..+...+..+ .+.. + ..++++. .|. ..
T Consensus 4 i~kIavIG~G~MG~~iA~~la~---~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~-~~~---~e 76 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLL---AGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFC-ASL---AE 76 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEee-CCH---HH
Confidence 3689999999887663 23334 57899999999999876443211 1110 0 0124432 222 12
Q ss_pred CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205 200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKG 243 (535)
Q Consensus 200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~G 243 (535)
...+.|+|+.+ ...-.+-|..++..+...++|+.+|.. +..|
T Consensus 77 a~~~aD~Viea-vpe~~~vk~~l~~~l~~~~~~~~iI~S-sTsg 118 (495)
T PRK07531 77 AVAGADWIQES-VPERLDLKRRVLAEIDAAARPDALIGS-STSG 118 (495)
T ss_pred HhcCCCEEEEc-CcCCHHHHHHHHHHHHhhCCCCcEEEE-cCCC
Confidence 23568999975 432234488899999888888765544 4334
No 317
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=94.91 E-value=0.064 Score=60.32 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=73.2
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhc------CC-----CcEEEEEeCCh--------------hHHHHHHHHHhh-----
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQH------MK-----STHFDNIDIDE--------------TANNLARRIVSS----- 179 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~------l~-----Ga~VtGIDIDp--------------eAIelAR~li~~----- 179 (535)
...-+|+|+|=| .|+-.+...+.. -+ .-+++++|.+| +..+.+.++...
T Consensus 56 ~~~~~i~e~gfG-~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (662)
T PRK01747 56 RRRFVIAETGFG-TGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLL 134 (662)
T ss_pred CCcEEEEecCcc-hHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccC
Confidence 345799999999 588666555422 12 24899999865 223334444432
Q ss_pred cCC----c-CC--CeEEEEccccccccCC-CCcceEEeccccCC-hh--hHHHHHHHHHhhcccCeEEEEEcc
Q 041205 180 DDE----I-EK--RMKFLTCDIMEVKEKL-GEYDCIILAALAGN-EE--EKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 180 lG~----L-s~--rI~Fi~GDA~el~~dL-~~FDvVfiaALVgm-~e--dK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
.|. + +. .+++..||+.+....+ ..||++|+|+.-.- .+ =-.++|.++++.++|||+++.-+.
T Consensus 135 ~g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~ 207 (662)
T PRK01747 135 PGCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTS 207 (662)
T ss_pred CCceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeeh
Confidence 120 0 12 4557889998776666 35999999976521 11 127899999999999999998774
No 318
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.89 E-value=0.12 Score=54.19 Aligned_cols=82 Identities=20% Similarity=0.123 Sum_probs=64.0
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-----CC
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-----GE 203 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-----~~ 203 (535)
+.++...+|.=-|.+|.|-..|-+ +.+.++++|+|.|+.+++.|++.....+ +|++|++++-.++...+ +.
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~-l~~~~~li~~DrD~~Ai~~a~~~l~~~~---~r~~~v~~~F~~l~~~l~~~~i~~ 96 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEK-LPDLGRLIGIDRDPQAIAIAKERLKEFD---GRVTLVHGNFANLAEALKELGIGK 96 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHh-CCCCCeEEEEcCCHHHHHHHHHHhhccC---CcEEEEeCcHHHHHHHHHhcCCCc
Confidence 467788888877888999999876 4446779999999999999999988866 69999998765543322 35
Q ss_pred cceEEeccccC
Q 041205 204 YDCIILAALAG 214 (535)
Q Consensus 204 FDvVfiaALVg 214 (535)
+|-|++|-.|.
T Consensus 97 vDGiL~DLGVS 107 (314)
T COG0275 97 VDGILLDLGVS 107 (314)
T ss_pred eeEEEEeccCC
Confidence 77777776663
No 319
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=94.87 E-value=0.15 Score=51.13 Aligned_cols=96 Identities=17% Similarity=0.282 Sum_probs=63.9
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
++.+||-.|+|.+|..++.+|++ .|. +|++++.+++..+.+++ .| ...-+.....+..+.......||+|+-
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~--~G~~~v~~~~~s~~~~~~~~~----~g-~~~vi~~~~~~~~~~~~~~~~vd~vld 237 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARR--AGAAEIVATDLADAPLAVARA----MG-ADETVNLARDPLAAYAADKGDFDVVFE 237 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHH----cC-CCEEEcCCchhhhhhhccCCCccEEEE
Confidence 78999999999889999999994 477 79999999888776654 34 211111111111112222234999986
Q ss_pred ccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205 210 AALAGNEEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 210 aALVgm~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
.... ...+..+.+.|+++|+++.-
T Consensus 238 ~~g~------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 238 ASGA------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred CCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 4322 34578888999999999864
No 320
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=94.81 E-value=0.1 Score=55.69 Aligned_cols=103 Identities=19% Similarity=0.272 Sum_probs=72.3
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC--CCc
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL--GEY 204 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL--~~F 204 (535)
....+++.|+-+|||.+|+++|.-|+ .....+|++||++++..++|+++=.... +..+ +. +|+.+...++ +..
T Consensus 181 a~v~~G~tvaV~GlGgVGlaaI~gA~-~agA~~IiAvD~~~~Kl~~A~~fGAT~~-vn~~-~~--~~vv~~i~~~T~gG~ 255 (366)
T COG1062 181 AKVEPGDTVAVFGLGGVGLAAIQGAK-AAGAGRIIAVDINPEKLELAKKFGATHF-VNPK-EV--DDVVEAIVELTDGGA 255 (366)
T ss_pred ccCCCCCeEEEEeccHhHHHHHHHHH-HcCCceEEEEeCCHHHHHHHHhcCCcee-ecch-hh--hhHHHHHHHhcCCCC
Confidence 45689999999999999999999999 4656789999999999999987633222 1110 00 0333333332 258
Q ss_pred ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
|++|-. +| ..++++.....+.++|..++-.
T Consensus 256 d~~~e~--~G----~~~~~~~al~~~~~~G~~v~iG 285 (366)
T COG1062 256 DYAFEC--VG----NVEVMRQALEATHRGGTSVIIG 285 (366)
T ss_pred CEEEEc--cC----CHHHHHHHHHHHhcCCeEEEEe
Confidence 888753 22 2448888888888899888755
No 321
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=94.72 E-value=0.15 Score=51.14 Aligned_cols=99 Identities=11% Similarity=0.092 Sum_probs=63.4
Q ss_pred CCCCC--CEEEEEcc-CCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc--CC
Q 041205 128 GVAQL--KKVAFVGS-GPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE--KL 201 (535)
Q Consensus 128 ~l~~p--kRVLeIGS-GplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~--dL 201 (535)
.+.++ ++||-.|. |++|..++.+|++ .|+ +|++++.+++..+.+++ .+| ...-+.....+..+... ..
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~--~G~~~Vi~~~~s~~~~~~~~~---~lG-a~~vi~~~~~~~~~~i~~~~~ 222 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRL--LGCSRVVGICGSDEKCQLLKS---ELG-FDAAINYKTDNVAERLRELCP 222 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHH---hcC-CcEEEECCCCCHHHHHHHHCC
Confidence 34544 89999996 9999999999994 577 89999999887666554 245 22111111112111111 11
Q ss_pred CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205 202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
.++|+||-. +| .. .+....+.|++||+++.-
T Consensus 223 ~gvd~vid~--~g---~~--~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 223 EGVDVYFDN--VG---GE--ISDTVISQMNENSHIILC 253 (345)
T ss_pred CCceEEEEC--CC---cH--HHHHHHHHhccCCEEEEE
Confidence 469999843 22 11 357788899999999874
No 322
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=94.70 E-value=0.18 Score=48.95 Aligned_cols=97 Identities=20% Similarity=0.182 Sum_probs=67.1
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcE-EEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcc
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTH-FDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYD 205 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~-VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FD 205 (535)
..+.++.+||-.|+|++|..++.+|++ .|.+ |++++.+++..+.++++ | ..+.+.....+ . ....++|
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~--~g~~~vi~~~~~~~~~~~~~~~----g-~~~~~~~~~~~---~-~~~~~~d 161 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKA--AGAREVVGVDPDAARRELAEAL----G-PADPVAADTAD---E-IGGRGAD 161 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCcEEEECCCHHHHHHHHHc----C-CCccccccchh---h-hcCCCCC
Confidence 355789999999999999999999994 4677 99999999988777654 3 11222111111 1 1224699
Q ss_pred eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+||-.... ...+....+.|+++|.++.-.
T Consensus 162 ~vl~~~~~------~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 162 VVIEASGS------PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEEEccCC------hHHHHHHHHHhcCCcEEEEEe
Confidence 98864332 236788888999999998643
No 323
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.66 E-value=0.2 Score=49.78 Aligned_cols=95 Identities=13% Similarity=0.132 Sum_probs=57.8
Q ss_pred CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcC---CCeEEEEccccccccCCCCcceEEe
Q 041205 133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIE---KRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls---~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
++|+.||+|.+|.+...... ..|..|+.+|.+++.++..++ .| +. ..... .....+-+.+...+|+||+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~--~~g~~V~~~~r~~~~~~~~~~----~g-~~~~~~~~~~-~~~~~~~~~~~~~~d~vil 72 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALA--QAGHDVTLVARRGAHLDALNE----NG-LRLEDGEITV-PVLAADDPAELGPQDLVIL 72 (304)
T ss_pred CEEEEECCCHHHHHHHHHHH--hCCCeEEEEECChHHHHHHHH----cC-CcccCCceee-cccCCCChhHcCCCCEEEE
Confidence 47999999998865433322 257899999998877654443 24 21 11111 0001111112357999999
Q ss_pred ccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205 210 AALAGNEEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 210 aALVgm~edK~~VL~eL~rvLKPGGvLVv 238 (535)
+ ... .+-..++..+.+.+.++..++.
T Consensus 73 a-~k~--~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 73 A-VKA--YQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred e-ccc--ccHHHHHHHHhhhcCCCCEEEE
Confidence 6 332 3567888999988888866654
No 324
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.65 E-value=0.11 Score=51.89 Aligned_cols=94 Identities=17% Similarity=0.168 Sum_probs=56.1
Q ss_pred CEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC----cCCCeEEEEcccc-ccccCCCCcce
Q 041205 133 KKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSSDDE----IEKRMKFLTCDIM-EVKEKLGEYDC 206 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~----Ls~rI~Fi~GDA~-el~~dL~~FDv 206 (535)
++|+.||+|++|.+.-. |++ .|..|+.++. ++.++..++ .|. ......+ ...+. +.......+|+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~---~g~~V~~~~r-~~~~~~~~~----~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~ 71 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLE---AGRDVTFLVR-PKRAKALRE----RGLVIRSDHGDAVV-PGPVITDPEELTGPFDL 71 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHH---CCCceEEEec-HHHHHHHHh----CCeEEEeCCCeEEe-cceeecCHHHccCCCCE
Confidence 48999999998885443 444 4778999999 666554332 231 0011111 11111 11111257999
Q ss_pred EEeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205 207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVv 238 (535)
||++.-- .+-..++..+...+.++.+|+.
T Consensus 72 vilavk~---~~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 72 VILAVKA---YQLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred EEEEecc---cCHHHHHHHHHhhcCCCCEEEE
Confidence 9996333 3567788889888888876654
No 325
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.62 E-value=0.033 Score=54.36 Aligned_cols=109 Identities=17% Similarity=0.219 Sum_probs=76.3
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc---CCcCCCeEEEEcccc--ccccCCCCc
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD---DEIEKRMKFLTCDIM--EVKEKLGEY 204 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l---G~Ls~rI~Fi~GDA~--el~~dL~~F 204 (535)
-.+.+|+++|.|-.|++++++|. ..|...|.-.|-++++++--++....- + + .+...+.-+.. .....-..|
T Consensus 28 ~rg~~ilelgggft~laglmia~-~a~~~~v~ltdgne~svrnv~ki~~~n~~s~-~-tsc~vlrw~~~~aqsq~eq~tF 104 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIAC-KAPDSSVWLTDGNEESVRNVEKIRNSNMASS-L-TSCCVLRWLIWGAQSQQEQHTF 104 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheee-ecCCceEEEecCCHHHHHHHHHHHhcccccc-c-ceehhhHHHHhhhHHHHhhCcc
Confidence 34689999999999999999998 688899999999999998887765542 2 1 22212111110 011122369
Q ss_pred ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
|+|+.+-=+=..+..+.+.+-|+.+|+|.|.=++-++
T Consensus 105 DiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 105 DIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred cEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecC
Confidence 9998652221257788899999999999998666665
No 326
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=94.61 E-value=0.22 Score=55.04 Aligned_cols=102 Identities=20% Similarity=0.239 Sum_probs=69.7
Q ss_pred CCCCEEEEEccCCChhhHH-HHHhhcCCCcEEEEEeCChhHHHHHHHHHhh-------cCCc--------CCCeEEEEcc
Q 041205 130 AQLKKVAFVGSGPMPLTSI-ILASQHMKSTHFDNIDIDETANNLARRIVSS-------DDEI--------EKRMKFLTCD 193 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI-~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~-------lG~L--------s~rI~Fi~GD 193 (535)
.+-++|..||+|.+|..-- .+|. .|..|+.+|++++.++.+++.+++ .|.+ -.++++. .|
T Consensus 3 ~~~~kV~VIGaG~MG~gIA~~la~---aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~ 78 (503)
T TIGR02279 3 INVVTVAVIGAGAMGAGIAQVAAS---AGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TD 78 (503)
T ss_pred CCccEEEEECcCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CC
Confidence 4567899999999885533 3344 688999999999999988654332 1211 0234442 23
Q ss_pred ccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 194 IMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 194 A~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
. ..+.+.|+|+-+ .....+-|..+|.++.+.++|+.+|...+
T Consensus 79 ~----~~l~~aDlVIEa-v~E~~~vK~~vf~~l~~~~~~~~IlasnT 120 (503)
T TIGR02279 79 L----HALADAGLVIEA-IVENLEVKKALFAQLEELCPADTIIASNT 120 (503)
T ss_pred H----HHhCCCCEEEEc-CcCcHHHHHHHHHHHHhhCCCCeEEEECC
Confidence 2 233578999985 33324679999999999999998887655
No 327
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.59 E-value=0.23 Score=42.64 Aligned_cols=93 Identities=12% Similarity=0.162 Sum_probs=61.8
Q ss_pred EEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc----CCCCcceEEec
Q 041205 135 VAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE----KLGEYDCIILA 210 (535)
Q Consensus 135 VLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~----dL~~FDvVfia 210 (535)
|+-+|+|.+|....-... ..+..|+.||.|++.++.++ ..| +.++.||+.+... ....+|.|++.
T Consensus 1 vvI~G~g~~~~~i~~~L~--~~~~~vvvid~d~~~~~~~~----~~~-----~~~i~gd~~~~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLK--EGGIDVVVIDRDPERVEELR----EEG-----VEVIYGDATDPEVLERAGIEKADAVVIL 69 (116)
T ss_dssp EEEES-SHHHHHHHHHHH--HTTSEEEEEESSHHHHHHHH----HTT-----SEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred eEEEcCCHHHHHHHHHHH--hCCCEEEEEECCcHHHHHHH----hcc-----cccccccchhhhHHhhcCccccCEEEEc
Confidence 678999876655544444 13348999999999977665 334 4689999976321 33568888876
Q ss_pred cccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 211 ALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 211 ALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
..- ....-.+....+.+.|...++++..
T Consensus 70 ~~~---d~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 70 TDD---DEENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp SSS---HHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred cCC---HHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 443 3445555566677889998888764
No 328
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=94.57 E-value=0.27 Score=53.80 Aligned_cols=109 Identities=17% Similarity=0.193 Sum_probs=82.0
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc-CC-CCcce
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-KL-GEYDC 206 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-dL-~~FDv 206 (535)
..++.||||.-+-|+|=|+- +|.-+--.+.|.+-|.+...+..=+.++.++| + ++.-....|+.+++. .. +.||-
T Consensus 239 Pq~gERIlDmcAAPGGKTt~-IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG-v-~ntiv~n~D~~ef~~~~~~~~fDR 315 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTH-IAALMKNTGVIFANDSNENRLKSLKANLHRLG-V-TNTIVSNYDGREFPEKEFPGSFDR 315 (460)
T ss_pred CCCCCeecchhcCCCchHHH-HHHHHcCCceEEecccchHHHHHHHHHHHHhC-C-CceEEEccCcccccccccCcccce
Confidence 47899999999999998864 44423345789999999999999999999999 5 555567788876542 22 26999
Q ss_pred EEecccc-C--C--hh-----h------------HHHHHHHHHhhcccCeEEEEEc
Q 041205 207 IILAALA-G--N--EE-----E------------KAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 207 VfiaALV-g--m--~e-----d------------K~~VL~eL~rvLKPGGvLVvRs 240 (535)
|.++|-- | + .+ . -.++|......++|||+||+-+
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 9998653 2 1 11 1 1356777788999999999866
No 329
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=94.56 E-value=0.02 Score=49.72 Aligned_cols=88 Identities=20% Similarity=0.242 Sum_probs=58.7
Q ss_pred ChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc---CCCCcceEEeccccCChhhH
Q 041205 143 MPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE---KLGEYDCIILAALAGNEEEK 219 (535)
Q Consensus 143 lPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~---dL~~FDvVfiaALVgm~edK 219 (535)
+|+.++.+|+. -|++|+++|.+++..+.++++ | ...-+.....|..+... ...++|+||-....
T Consensus 2 vG~~a~q~ak~--~G~~vi~~~~~~~k~~~~~~~----G-a~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~------ 68 (130)
T PF00107_consen 2 VGLMAIQLAKA--MGAKVIATDRSEEKLELAKEL----G-ADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS------ 68 (130)
T ss_dssp HHHHHHHHHHH--TTSEEEEEESSHHHHHHHHHT----T-ESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS------
T ss_pred hHHHHHHHHHH--cCCEEEEEECCHHHHHHHHhh----c-ccccccccccccccccccccccccceEEEEecCc------
Confidence 68899999994 459999999999998777654 4 11111111111111111 11369999976443
Q ss_pred HHHHHHHHhhcccCeEEEEEcccc
Q 041205 220 AKILGHIRKYMKEGGVLLVRSAKG 243 (535)
Q Consensus 220 ~~VL~eL~rvLKPGGvLVvRsa~G 243 (535)
...++...+.++|||.+++-...+
T Consensus 69 ~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHHHhccCCEEEEEEccC
Confidence 568999999999999999976543
No 330
>PLN02494 adenosylhomocysteinase
Probab=94.53 E-value=0.091 Score=58.03 Aligned_cols=111 Identities=16% Similarity=0.138 Sum_probs=72.3
Q ss_pred chhhHHhHHHHHHHHHHhhCC-CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCe
Q 041205 109 YENYVKLAKLEYGALIENTGV-AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRM 187 (535)
Q Consensus 109 y~NYv~LirlE~~lL~~~~~l-~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI 187 (535)
|+|-.-+-+.-++.+.+...+ ..+++|+-+|+|++|......++ ..|++|+.+|+|+.....|. ..| +
T Consensus 230 fDn~yGtgqS~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~ak--a~Ga~VIV~e~dp~r~~eA~----~~G-~---- 298 (477)
T PLN02494 230 FDNLYGCRHSLPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMK--AAGARVIVTEIDPICALQAL----MEG-Y---- 298 (477)
T ss_pred hhccccccccHHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCchhhHHHH----hcC-C----
Confidence 344333333335666655432 57899999999999999888888 35899999999987644443 345 2
Q ss_pred EEEEccccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 188 KFLTCDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 188 ~Fi~GDA~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
.+. +..++ +...|+|+.... .+.-+.....+.||+||+|+.-.
T Consensus 299 ~vv--~leEa---l~~ADVVI~tTG-----t~~vI~~e~L~~MK~GAiLiNvG 341 (477)
T PLN02494 299 QVL--TLEDV---VSEADIFVTTTG-----NKDIIMVDHMRKMKNNAIVCNIG 341 (477)
T ss_pred eec--cHHHH---HhhCCEEEECCC-----CccchHHHHHhcCCCCCEEEEcC
Confidence 111 22222 245899987422 23334477788999999998753
No 331
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=94.52 E-value=0.13 Score=53.34 Aligned_cols=106 Identities=18% Similarity=0.224 Sum_probs=69.7
Q ss_pred HHHHhhCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205 122 ALIENTGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK 200 (535)
Q Consensus 122 lL~~~~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d 200 (535)
.+.....+.++++||-.| +|..|..++.||++ .|++++++--+++-.+. ++++| -..-|.+...|..+....
T Consensus 133 ~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~--~G~~~v~~~~s~~k~~~----~~~lG-Ad~vi~y~~~~~~~~v~~ 205 (326)
T COG0604 133 ALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKA--LGATVVAVVSSSEKLEL----LKELG-ADHVINYREEDFVEQVRE 205 (326)
T ss_pred HHHHhcCCCCCCEEEEecCCchHHHHHHHHHHH--cCCcEEEEecCHHHHHH----HHhcC-CCEEEcCCcccHHHHHHH
Confidence 333345578899999999 88899999999994 45466666666644444 44556 223345555554433222
Q ss_pred C---CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 201 L---GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 201 L---~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
+ ..+|+||- .+| ...+....+.|++||++++-..
T Consensus 206 ~t~g~gvDvv~D--~vG-----~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 206 LTGGKGVDVVLD--TVG-----GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred HcCCCCceEEEE--CCC-----HHHHHHHHHHhccCCEEEEEec
Confidence 2 25999986 344 4566667888999999988554
No 332
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=94.48 E-value=0.23 Score=50.57 Aligned_cols=97 Identities=16% Similarity=0.173 Sum_probs=65.1
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcc-------ccccccCC
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD-------IMEVKEKL 201 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GD-------A~el~~dL 201 (535)
.++++||-.|+|++|..++.+|+. .|. +|++++.+++..+.++ .+| ...-+.....+ +.+.. +.
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~--~G~~~v~~~~~~~~~~~~~~----~~g-~~~vi~~~~~~~~~~~~~i~~~~-~~ 247 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKL--AGARRVIVIDGSPERLELAR----EFG-ADATIDIDELPDPQRRAIVRDIT-GG 247 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHH----HcC-CCeEEcCcccccHHHHHHHHHHh-CC
Confidence 478999999999999999999994 577 9999999988776654 455 31111111111 11111 12
Q ss_pred CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
.++|+||-...- ...+....+.|+++|+++.-.
T Consensus 248 ~~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 248 RGADVVIEASGH------PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CCCcEEEECCCC------hHHHHHHHHHhccCCEEEEEc
Confidence 359998864221 346778888999999998754
No 333
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=94.46 E-value=0.16 Score=53.62 Aligned_cols=104 Identities=19% Similarity=0.207 Sum_probs=69.5
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcE-EEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc---cccc-cc--c
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTH-FDNIDIDETANNLARRIVSSDDEIEKRMKFLTC---DIME-VK--E 199 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~-VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G---DA~e-l~--~ 199 (535)
..+.++++||-.|+|++|..++.+|+. .|++ |+.+|.+++..++|++ +| . + .+... +..+ +. .
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~--~Ga~~vi~~d~~~~r~~~a~~----~G-a-~--~v~~~~~~~~~~~v~~~~ 250 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQL--LGAAVVIVGDLNPARLAQARS----FG-C-E--TVDLSKDATLPEQIEQIL 250 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCceEEEeCCCHHHHHHHHH----cC-C-e--EEecCCcccHHHHHHHHc
Confidence 345789999999999999999999993 4665 6667899888887775 46 2 2 12211 1111 11 1
Q ss_pred CCCCcceEEeccccC--------ChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 200 KLGEYDCIILAALAG--------NEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 200 dL~~FDvVfiaALVg--------m~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
....+|+||-..... +..+....+++..+.+++||.+++-.
T Consensus 251 ~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 251 GEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred CCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 123599998643321 12234568899999999999998853
No 334
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.45 E-value=0.18 Score=51.75 Aligned_cols=95 Identities=12% Similarity=0.110 Sum_probs=59.0
Q ss_pred CEEEEEccCCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHHHH--H--hhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205 133 KKVAFVGSGPMPLT-SIILASQHMKSTHFDNIDIDETANNLARRI--V--SSDDEIEKRMKFLTCDIMEVKEKLGEYDCI 207 (535)
Q Consensus 133 kRVLeIGSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR~l--i--~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV 207 (535)
+||+.||+|++|.. +..|++ .|..|+-++..++.++.-++. + ...| ....+. .... .......||+|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~---~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g---~~~~~~-~~~~-~~~~~~~~D~v 74 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLAR---AGLPVRLILRDRQRLAAYQQAGGLTLVEQG---QASLYA-IPAE-TADAAEPIHRL 74 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHh---CCCCeEEEEechHHHHHHhhcCCeEEeeCC---cceeec-cCCC-CcccccccCEE
Confidence 68999999998764 445555 578899999987655433321 1 1112 112211 1111 11233579999
Q ss_pred EeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205 208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVv 238 (535)
|+. .+. .+-..++..+.+.+.|++.++.
T Consensus 75 iv~-vK~--~~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 75 LLA-CKA--YDAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred EEE-CCH--HhHHHHHHHHHhhCCCCCEEEE
Confidence 995 664 3556788999999999886654
No 335
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=94.43 E-value=0.21 Score=50.39 Aligned_cols=102 Identities=13% Similarity=0.047 Sum_probs=68.2
Q ss_pred hhCCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc-cccccccC--C
Q 041205 126 NTGVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC-DIMEVKEK--L 201 (535)
Q Consensus 126 ~~~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G-DA~el~~d--L 201 (535)
...+.++++||-.|. |++|..++.+|+. .|++|++++.+++..+.+++. +| ...-+..... |..+.... .
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~--~G~~Vi~~~~~~~~~~~~~~~---lG-a~~vi~~~~~~~~~~~i~~~~~ 219 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKL--KGCYVVGSAGSDEKVDLLKNK---LG-FDDAFNYKEEPDLDAALKRYFP 219 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHh---cC-CceeEEcCCcccHHHHHHHhCC
Confidence 345688999999996 8999999999994 689999999998876666542 45 2211221111 21111111 1
Q ss_pred CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
.++|+||- .+| . ..+....+.|++||.++.-.
T Consensus 220 ~gvd~v~d--~~g---~--~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 220 NGIDIYFD--NVG---G--KMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CCcEEEEE--CCC---H--HHHHHHHHHhccCcEEEEec
Confidence 46999884 233 1 45788889999999998653
No 336
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.40 E-value=0.02 Score=53.63 Aligned_cols=100 Identities=16% Similarity=0.083 Sum_probs=59.3
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcc----------------
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD---------------- 193 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GD---------------- 193 (535)
.+|.+|+.+|.|..|..|..++.. -|++|+.+|..++..+....+... .+.....+
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~--lGa~v~~~d~~~~~~~~~~~~~~~------~i~~~~~~~~~~~~~~~~~~~~~~ 89 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKG--LGAEVVVPDERPERLRQLESLGAY------FIEVDYEDHLERKDFDKADYYEHP 89 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHH--TT-EEEEEESSHHHHHHHHHTTTE------ESEETTTTTTTSB-CCHHHCHHHC
T ss_pred CCCeEEEEECCCHHHHHHHHHHhH--CCCEEEeccCCHHHHHhhhcccCc------eEEEcccccccccccchhhhhHHH
Confidence 578999999999999999999995 589999999999887765543221 12221000
Q ss_pred ---ccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEE
Q 041205 194 ---IMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLL 237 (535)
Q Consensus 194 ---A~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLV 237 (535)
-..+......+|+|+..++..-...+.-+-++..+.|+||.+++
T Consensus 90 ~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIv 136 (168)
T PF01262_consen 90 ESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIV 136 (168)
T ss_dssp CHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEE
T ss_pred HHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEE
Confidence 00111122457888876665212233334456667788766554
No 337
>PRK10083 putative oxidoreductase; Provisional
Probab=94.33 E-value=0.28 Score=49.19 Aligned_cols=103 Identities=17% Similarity=0.107 Sum_probs=65.7
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-CCc
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-GEY 204 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-~~F 204 (535)
..+.++++|+-.|+|++|..++.+|+. ..|+ .|+++|.+++..+.++++ | ...-+.....+..+..... .++
T Consensus 156 ~~~~~g~~vlI~g~g~vG~~~~~~a~~-~~G~~~v~~~~~~~~~~~~~~~~----G-a~~~i~~~~~~~~~~~~~~g~~~ 229 (339)
T PRK10083 156 TGPTEQDVALIYGAGPVGLTIVQVLKG-VYNVKAVIVADRIDERLALAKES----G-ADWVINNAQEPLGEALEEKGIKP 229 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH-hCCCCEEEEEcCCHHHHHHHHHh----C-CcEEecCccccHHHHHhcCCCCC
Confidence 456789999999999999999999983 2366 588999999888777653 4 2111121111211111111 124
Q ss_pred ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
|+||-... ....+....+.|++||+++.-..
T Consensus 230 d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 230 TLIIDAAC------HPSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred CEEEECCC------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 56654322 13467888899999999987543
No 338
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.30 E-value=0.33 Score=49.60 Aligned_cols=96 Identities=18% Similarity=0.246 Sum_probs=60.2
Q ss_pred CEEEEEccCCChhhH-HHHHhhcCCCcEEEEEeCChhHHHHHHHHHh-------hcCCcC--------CCeEEEEccccc
Q 041205 133 KKVAFVGSGPMPLTS-IILASQHMKSTHFDNIDIDETANNLARRIVS-------SDDEIE--------KRMKFLTCDIME 196 (535)
Q Consensus 133 kRVLeIGSGplPlTA-I~LAk~~l~Ga~VtGIDIDpeAIelAR~li~-------~lG~Ls--------~rI~Fi~GDA~e 196 (535)
++|..||+|.+|.+- ..+++ .|.+|+.+|.+++.++.++..++ ..|.+. .++++. .|..+
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~---~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~-~~~~~ 78 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFAR---AGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVT-DSLAD 78 (308)
T ss_pred cEEEEECccHHHHHHHHHHHH---CCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEE-CcHHH
Confidence 489999999888663 33444 57899999999999888765322 233110 123332 23222
Q ss_pred cccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEE
Q 041205 197 VKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVL 236 (535)
Q Consensus 197 l~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvL 236 (535)
...+.|+|+.+..-. ..-|..++..+.+..+++.++
T Consensus 79 ---a~~~ad~Vi~avpe~-~~~k~~~~~~l~~~~~~~~ii 114 (308)
T PRK06129 79 ---AVADADYVQESAPEN-LELKRALFAELDALAPPHAIL 114 (308)
T ss_pred ---hhCCCCEEEECCcCC-HHHHHHHHHHHHHhCCCcceE
Confidence 235689999863321 235888888887766555444
No 339
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.26 E-value=0.17 Score=51.74 Aligned_cols=96 Identities=8% Similarity=0.125 Sum_probs=55.8
Q ss_pred CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC-c----CCCeEEEEcc--ccccccCCCCcc
Q 041205 133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE-I----EKRMKFLTCD--IMEVKEKLGEYD 205 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~-L----s~rI~Fi~GD--A~el~~dL~~FD 205 (535)
++|..||+|.+|.+--.... ..|.+|+.+|.++.. +. ++..|. + .....+.... ..........+|
T Consensus 3 mkI~IiG~G~mG~~~A~~L~--~~G~~V~~~~r~~~~-~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 75 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLA--AAGADVTLIGRARIG-DE----LRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATAD 75 (341)
T ss_pred ceEEEECCCHHHHHHHHHHH--hcCCcEEEEecHHHH-HH----HHhcCceeecCCCcceecccceeEeccChhhccCCC
Confidence 58999999998865444333 257889999997532 22 222331 0 0011110000 001112335799
Q ss_pred eEEeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205 206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVv 238 (535)
+||+.- .. .+...+++.+.+.+++|.+++.
T Consensus 76 ~vil~v-k~--~~~~~~~~~l~~~~~~~~iii~ 105 (341)
T PRK08229 76 LVLVTV-KS--AATADAAAALAGHARPGAVVVS 105 (341)
T ss_pred EEEEEe-cC--cchHHHHHHHHhhCCCCCEEEE
Confidence 999863 32 4667889999999988876654
No 340
>PRK08507 prephenate dehydrogenase; Validated
Probab=94.23 E-value=0.2 Score=50.16 Aligned_cols=88 Identities=18% Similarity=0.178 Sum_probs=55.5
Q ss_pred CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccc
Q 041205 133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAAL 212 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaAL 212 (535)
++|..||+|.+|.+-...........+|+++|.+++..+.++ ..| ..+. ..+..++ ...|+||++--
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~----~~g-~~~~----~~~~~~~----~~aD~Vilavp 67 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL----ELG-LVDE----IVSFEEL----KKCDVIFLAIP 67 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH----HCC-CCcc----cCCHHHH----hcCCEEEEeCc
Confidence 479999999888764332221111247999999999877654 355 2111 1222221 23899999744
Q ss_pred cCChhhHHHHHHHHHhhcccCeEEE
Q 041205 213 AGNEEEKAKILGHIRKYMKEGGVLL 237 (535)
Q Consensus 213 Vgm~edK~~VL~eL~rvLKPGGvLV 237 (535)
. ..-..++.++.+ ++||.+|+
T Consensus 68 ~---~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 68 V---DAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred H---HHHHHHHHHHhc-cCCCCEEE
Confidence 4 456778888888 88887554
No 341
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=94.22 E-value=0.047 Score=60.11 Aligned_cols=107 Identities=16% Similarity=0.148 Sum_probs=77.7
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc-------CCC
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-------KLG 202 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-------dL~ 202 (535)
..+.++|-||-|.+++++..... +|..++|+|++||++++.|++.+.-.- +++..++-.|+.+... +..
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~--~p~~~i~~ve~dP~~l~va~q~f~f~q--~~r~~V~i~dGl~~~~~~~k~~~~~~ 369 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMS--LPKFQITAVEIDPEMLEVATQYFGFMQ--SDRNKVHIADGLDFLQRTAKSQQEDI 369 (482)
T ss_pred cccCcEEEEecCCCccccceeee--cCccceeEEEEChhHhhccHhhhchhh--hhhhhhhHhhchHHHHHHhhcccccc
Confidence 34567778887777888877644 789999999999999999999987654 2466777777764332 223
Q ss_pred CcceEEeccc----cCC-hhhH----HHHHHHHHhhcccCeEEEEEc
Q 041205 203 EYDCIILAAL----AGN-EEEK----AKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 203 ~FDvVfiaAL----Vgm-~edK----~~VL~eL~rvLKPGGvLVvRs 240 (535)
.||+++++-. .|| .++. ..+|..+...+.|-|++++.-
T Consensus 370 ~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inl 416 (482)
T KOG2352|consen 370 CPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINL 416 (482)
T ss_pred CCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEE
Confidence 5999997622 355 3332 356777888999999998854
No 342
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=94.19 E-value=0.26 Score=49.57 Aligned_cols=100 Identities=21% Similarity=0.290 Sum_probs=67.7
Q ss_pred CCCCCCEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccc----cccccCCC
Q 041205 128 GVAQLKKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDI----MEVKEKLG 202 (535)
Q Consensus 128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA----~el~~dL~ 202 (535)
.+.++.+||-.|+|++|..++.+|+. .| .+|+++|.+++..+.+++ .| ...-+.....+. .++. ...
T Consensus 163 ~~~~g~~vlI~g~g~~g~~~~~~a~~--~G~~~v~~~~~~~~~~~~~~~----~g-~~~~v~~~~~~~~~~i~~~~-~~~ 234 (345)
T cd08286 163 KVKPGDTVAIVGAGPVGLAALLTAQL--YSPSKIIMVDLDDNRLEVAKK----LG-ATHTVNSAKGDAIEQVLELT-DGR 234 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----hC-CCceeccccccHHHHHHHHh-CCC
Confidence 45788999999999999999999993 56 789999999988776664 45 322222222221 1111 223
Q ss_pred CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
.+|+|+-.. + . ...+..+.+.|+++|.++.-..
T Consensus 235 ~~d~vld~~--g---~-~~~~~~~~~~l~~~g~~v~~g~ 267 (345)
T cd08286 235 GVDVVIEAV--G---I-PATFELCQELVAPGGHIANVGV 267 (345)
T ss_pred CCCEEEECC--C---C-HHHHHHHHHhccCCcEEEEecc
Confidence 599988542 2 1 2257888899999999986543
No 343
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=94.14 E-value=0.33 Score=48.32 Aligned_cols=94 Identities=15% Similarity=0.177 Sum_probs=66.4
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC 206 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv 206 (535)
..+.++.+||-.|+|++|..++.+|++ .|.+|++++.+++..+.++ ..| .. .++..+. . ...++|+
T Consensus 163 ~~~~~~~~vlV~g~g~vg~~~~~la~~--~g~~v~~~~~~~~~~~~~~----~~g-~~---~~~~~~~--~--~~~~vD~ 228 (329)
T cd08298 163 AGLKPGQRLGLYGFGASAHLALQIARY--QGAEVFAFTRSGEHQELAR----ELG-AD---WAGDSDD--L--PPEPLDA 228 (329)
T ss_pred hCCCCCCEEEEECCcHHHHHHHHHHHH--CCCeEEEEcCChHHHHHHH----HhC-Cc---EEeccCc--c--CCCcccE
Confidence 456788999999999999999999984 6799999999987665553 456 21 1111111 1 1235898
Q ss_pred EEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
|+..+.. ...+..+.+.|++||.++.-.
T Consensus 229 vi~~~~~------~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 229 AIIFAPV------GALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred EEEcCCc------HHHHHHHHHHhhcCCEEEEEc
Confidence 8864333 247888999999999998743
No 344
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=94.08 E-value=0.23 Score=57.36 Aligned_cols=101 Identities=15% Similarity=0.162 Sum_probs=72.7
Q ss_pred CCEEEEEccCCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc-------CCcC--------CCeEEEEcccc
Q 041205 132 LKKVAFVGSGPMPLT-SIILASQHMKSTHFDNIDIDETANNLARRIVSSD-------DEIE--------KRMKFLTCDIM 195 (535)
Q Consensus 132 pkRVLeIGSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l-------G~Ls--------~rI~Fi~GDA~ 195 (535)
-++|.-||+|.+|-. +.++|. .|..|+-+|.++++++.+.+.+++. |.+. .+|++. .|.
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~---~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~- 409 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVD---KGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDY- 409 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHh---CCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH-
Confidence 368999999998876 444545 6899999999999999987765531 2111 345443 222
Q ss_pred ccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 196 EVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 196 el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
..+.+.|+|+=+ .....+-|.+++.++-++++|+++|...+.
T Consensus 410 ---~~~~~aDlViEA-v~E~l~~K~~vf~~l~~~~~~~~ilasNTS 451 (737)
T TIGR02441 410 ---SGFKNADMVIEA-VFEDLSLKHKVIKEVEAVVPPHCIIASNTS 451 (737)
T ss_pred ---HHhccCCeehhh-ccccHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 234678988854 333357899999999999999999988764
No 345
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=94.04 E-value=0.45 Score=51.50 Aligned_cols=100 Identities=18% Similarity=0.244 Sum_probs=62.9
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHh-----------hcCCcCCCeEEEEccccccc
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVS-----------SDDEIEKRMKFLTCDIMEVK 198 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~-----------~lG~Ls~rI~Fi~GDA~el~ 198 (535)
.++++|.+||.|-+|++.-.... .+-+|+|+|+|++.++.-++-.. ..| +..|. .+. +
T Consensus 4 ~~~mkI~vIGlGyvGlpmA~~la---~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g----~l~~t-~~~-~-- 72 (425)
T PRK15182 4 IDEVKIAIIGLGYVGLPLAVEFG---KSRQVVGFDVNKKRILELKNGVDVNLETTEEELREAR----YLKFT-SEI-E-- 72 (425)
T ss_pred CCCCeEEEECcCcchHHHHHHHh---cCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhC----CeeEE-eCH-H--
Confidence 46799999999988887544322 35799999999999887652111 111 22231 221 1
Q ss_pred cCCCCcceEEeccccCC----hhhHHH---HHHHHHhhcccCeEEEEEcc
Q 041205 199 EKLGEYDCIILAALAGN----EEEKAK---ILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 199 ~dL~~FDvVfiaALVgm----~edK~~---VL~eL~rvLKPGGvLVvRsa 241 (535)
.....|+||+.---.. .++-.. ..+.+.+.+++|.++|..+.
T Consensus 73 -~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~ST 121 (425)
T PRK15182 73 -KIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYEST 121 (425)
T ss_pred -HHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 2346899997532211 122233 34678899999999999884
No 346
>PLN02256 arogenate dehydrogenase
Probab=94.04 E-value=0.27 Score=50.98 Aligned_cols=100 Identities=14% Similarity=0.124 Sum_probs=61.3
Q ss_pred hHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE
Q 041205 112 YVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLT 191 (535)
Q Consensus 112 Yv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~ 191 (535)
|+.-.+.|... ...++|..||+|-+|.+-..... ..|.+|+++|.++. . ......| . .+ .
T Consensus 23 ~~~~~~~~~~~-------~~~~kI~IIG~G~mG~slA~~L~--~~G~~V~~~d~~~~-~----~~a~~~g-v----~~-~ 82 (304)
T PLN02256 23 YESRLQEELEK-------SRKLKIGIVGFGNFGQFLAKTFV--KQGHTVLATSRSDY-S----DIAAELG-V----SF-F 82 (304)
T ss_pred hHhHHhHhhcc-------CCCCEEEEEeeCHHHHHHHHHHH--hCCCEEEEEECccH-H----HHHHHcC-C----ee-e
Confidence 45445555443 46789999999987776433333 24678999999963 2 2333456 2 22 2
Q ss_pred ccccccccCCCCcceEEeccccCChhhHHHHHHHH-HhhcccCeEE
Q 041205 192 CDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHI-RKYMKEGGVL 236 (535)
Q Consensus 192 GDA~el~~dL~~FDvVfiaALVgm~edK~~VL~eL-~rvLKPGGvL 236 (535)
.|..++.. ...|+|+++.-. ..-..++.++ ...++||++|
T Consensus 83 ~~~~e~~~--~~aDvVilavp~---~~~~~vl~~l~~~~l~~~~iv 123 (304)
T PLN02256 83 RDPDDFCE--EHPDVVLLCTSI---LSTEAVLRSLPLQRLKRSTLF 123 (304)
T ss_pred CCHHHHhh--CCCCEEEEecCH---HHHHHHHHhhhhhccCCCCEE
Confidence 33332211 357999996544 3557777877 5668888754
No 347
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=94.02 E-value=0.12 Score=56.94 Aligned_cols=101 Identities=16% Similarity=0.255 Sum_probs=70.1
Q ss_pred CCCEEEEEccCCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh-------cCCc--------CCCeEEEEccc
Q 041205 131 QLKKVAFVGSGPMPLT-SIILASQHMKSTHFDNIDIDETANNLARRIVSS-------DDEI--------EKRMKFLTCDI 194 (535)
Q Consensus 131 ~pkRVLeIGSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~-------lG~L--------s~rI~Fi~GDA 194 (535)
+-++|..||.|.+|.. +..+|. .|..|+.+|++++.++.+.+.+++ .|.+ -.++++. .|.
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~---aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~ 81 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQ---AGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EAL 81 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH
Confidence 4578999999998854 334444 588999999999999998665542 1211 0235543 232
Q ss_pred cccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 195 MEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 195 ~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
.+..+.|+|+-+ .....+-|..+|.++.+.++||.+|++.+
T Consensus 82 ----~~~~~aDlViEa-v~E~~~vK~~vf~~l~~~~~~~ailasnt 122 (507)
T PRK08268 82 ----ADLADCDLVVEA-IVERLDVKQALFAQLEAIVSPDCILATNT 122 (507)
T ss_pred ----HHhCCCCEEEEc-CcccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 234578999975 33335679999999999999998887654
No 348
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=93.93 E-value=0.23 Score=50.66 Aligned_cols=89 Identities=15% Similarity=0.272 Sum_probs=57.0
Q ss_pred CEEEEEccCCChhhHH-HHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205 133 KKVAFVGSGPMPLTSI-ILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA 211 (535)
Q Consensus 133 kRVLeIGSGplPlTAI-~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA 211 (535)
++|.+||+|.+|.+-. .|++ .|.+|+++|++++.++...+ .| .. . ..+..++...+...|+||+.-
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~---~g~~V~~~dr~~~~~~~l~~----~g-~~---~--~~s~~~~~~~~~~~dvIi~~v 67 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAK---RGHDCVGYDHDQDAVKAMKE----DR-TT---G--VANLRELSQRLSAPRVVWVMV 67 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHH----cC-Cc---c--cCCHHHHHhhcCCCCEEEEEc
Confidence 4799999998876532 2333 57899999999988766553 34 10 0 123333333334579999852
Q ss_pred ccCChhhHHHHHHHHHhhcccCeEEE
Q 041205 212 LAGNEEEKAKILGHIRKYMKEGGVLL 237 (535)
Q Consensus 212 LVgm~edK~~VL~eL~rvLKPGGvLV 237 (535)
-. ..-..+++++...+++|.+++
T Consensus 68 p~---~~~~~v~~~l~~~l~~g~ivi 90 (298)
T TIGR00872 68 PH---GIVDAVLEELAPTLEKGDIVI 90 (298)
T ss_pred Cc---hHHHHHHHHHHhhCCCCCEEE
Confidence 22 245677888888898886554
No 349
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=93.88 E-value=0.3 Score=49.16 Aligned_cols=98 Identities=14% Similarity=0.203 Sum_probs=59.4
Q ss_pred CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh---cCC--cCCCeEEEEccccccccCCCCcceE
Q 041205 133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSS---DDE--IEKRMKFLTCDIMEVKEKLGEYDCI 207 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~---lG~--Ls~rI~Fi~GDA~el~~dL~~FDvV 207 (535)
++|.+||+|.+|..-..... ..|..|+.+|.+++.++..++.-.. .+. +..++.+ ..|..+ ...+.|+|
T Consensus 2 mkI~iiG~G~mG~~~a~~L~--~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~D~v 75 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLA--RNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAE---ALADADLI 75 (325)
T ss_pred CEEEEECCCHHHHHHHHHHH--hCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHH---HHhCCCEE
Confidence 48999999988766433222 2577899999999887655442100 000 0012222 122211 22468999
Q ss_pred EeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205 208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
|+. ... .....++..+.+.++||.+++.-
T Consensus 76 i~~-v~~--~~~~~v~~~l~~~~~~~~~vi~~ 104 (325)
T PRK00094 76 LVA-VPS--QALREVLKQLKPLLPPDAPIVWA 104 (325)
T ss_pred EEe-CCH--HHHHHHHHHHHhhcCCCCEEEEE
Confidence 985 332 46778888888888888776654
No 350
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=93.87 E-value=0.32 Score=50.10 Aligned_cols=99 Identities=19% Similarity=0.207 Sum_probs=66.9
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc--cc----ccccc
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC--DI----MEVKE 199 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G--DA----~el~~ 199 (535)
..+.++.+||-.|+|++|..++.+|+. .|+ .|++++.+++..+.+++ +| ...-+..... +. .++.
T Consensus 179 ~~~~~g~~vlI~g~g~vG~~a~~~a~~--~G~~~v~~~~~~~~~~~~~~~----~g-~~~~v~~~~~~~~~~~~l~~~~- 250 (365)
T cd05279 179 AKVTPGSTCAVFGLGGVGLSVIMGCKA--AGASRIIAVDINKDKFEKAKQ----LG-ATECINPRDQDKPIVEVLTEMT- 250 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----hC-CCeecccccccchHHHHHHHHh-
Confidence 456788999999999999999999994 466 58999999988777754 44 2111211111 11 1111
Q ss_pred CCCCcceEEeccccCChhhHHHHHHHHHhhcc-cCeEEEEEc
Q 041205 200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMK-EGGVLLVRS 240 (535)
Q Consensus 200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLK-PGGvLVvRs 240 (535)
. +.+|+|+-. +| ....+....+.|+ +||+++.-.
T Consensus 251 ~-~~~d~vid~--~g----~~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 251 D-GGVDYAFEV--IG----SADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred C-CCCcEEEEC--CC----CHHHHHHHHHHhccCCCEEEEEe
Confidence 2 469999853 22 1346777888999 999998753
No 351
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=93.85 E-value=0.23 Score=51.17 Aligned_cols=92 Identities=18% Similarity=0.130 Sum_probs=63.0
Q ss_pred CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205 132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA 211 (535)
Q Consensus 132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA 211 (535)
-++|..||.|-+|.+-....+..-...+|+|+|.+.+..+.|.. +| +.+. ..+.. ........|+|+++-
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lg-v~d~----~~~~~-~~~~~~~aD~Vivav 72 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LG-VIDE----LTVAG-LAEAAAEADLVIVAV 72 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cC-cccc----cccch-hhhhcccCCEEEEec
Confidence 46899999999988866665643445667888888777766653 34 2111 11110 012335689999986
Q ss_pred ccCChhhHHHHHHHHHhhcccCeEE
Q 041205 212 LAGNEEEKAKILGHIRKYMKEGGVL 236 (535)
Q Consensus 212 LVgm~edK~~VL~eL~rvLKPGGvL 236 (535)
-+ ..-.++++++.+.|+||.+|
T Consensus 73 Pi---~~~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 73 PI---EATEEVLKELAPHLKKGAIV 94 (279)
T ss_pred cH---HHHHHHHHHhcccCCCCCEE
Confidence 66 67889999999999998766
No 352
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.82 E-value=0.43 Score=51.30 Aligned_cols=94 Identities=17% Similarity=0.275 Sum_probs=61.4
Q ss_pred CEEEEEccCCChhhHH-HHHhhcCCCcEEEEEeCChhHHHHHHH------------HHh---hcCCcCCCeEEEEccccc
Q 041205 133 KKVAFVGSGPMPLTSI-ILASQHMKSTHFDNIDIDETANNLARR------------IVS---SDDEIEKRMKFLTCDIME 196 (535)
Q Consensus 133 kRVLeIGSGplPlTAI-~LAk~~l~Ga~VtGIDIDpeAIelAR~------------li~---~lG~Ls~rI~Fi~GDA~e 196 (535)
++|..||.|-+|.+.- .|++ .|-+|+++|+|++.++.-++ ++. ..| +..+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~---~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g----~l~~~------ 70 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFAS---RQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGG----YLRAT------ 70 (415)
T ss_pred cEEEEECcchhhHHHHHHHHh---CCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcC----ceeee------
Confidence 6899999998877643 3445 57899999999999885221 000 111 12221
Q ss_pred cccCCCCcceEEeccccC------C-hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 197 VKEKLGEYDCIILAALAG------N-EEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 197 l~~dL~~FDvVfiaALVg------m-~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
.+....|+||+.--.. . ...-..+++.+.+.+++|.+++..+.
T Consensus 71 --~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST 120 (415)
T PRK11064 71 --TTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST 120 (415)
T ss_pred --cccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 1223579999864431 0 13445667889999999999988874
No 353
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=93.81 E-value=0.41 Score=47.51 Aligned_cols=93 Identities=18% Similarity=0.225 Sum_probs=66.5
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC 206 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv 206 (535)
..+.++.+||-.|+|++|..++.+|+. .|.+|++++.+++..+.+++ .| ....+.+ .+. .....||+
T Consensus 151 ~~~~~g~~vlV~g~g~vg~~~~q~a~~--~G~~vi~~~~~~~~~~~~~~----~g-~~~~~~~-----~~~-~~~~~~d~ 217 (319)
T cd08242 151 VPITPGDKVAVLGDGKLGLLIAQVLAL--TGPDVVLVGRHSEKLALARR----LG-VETVLPD-----EAE-SEGGGFDV 217 (319)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHH----cC-CcEEeCc-----ccc-ccCCCCCE
Confidence 345788999999999999999999984 68899999999988877775 45 3211111 111 12246999
Q ss_pred EEeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205 207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVv 238 (535)
|+-.. | -...+....+.++++|.++.
T Consensus 218 vid~~--g----~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 218 VVEAT--G----SPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred EEECC--C----ChHHHHHHHHHhhcCCEEEE
Confidence 98642 2 13467778889999999987
No 354
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=93.74 E-value=0.23 Score=54.88 Aligned_cols=92 Identities=18% Similarity=0.234 Sum_probs=59.0
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhc-CCCcEEE------EEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCC
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQH-MKSTHFD------NIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLG 202 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~-l~Ga~Vt------GIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~ 202 (535)
-.+++|+-||||..|- ..|..+ -.|..|+ +||.+...-+.|. ..| + . .++..++ ..
T Consensus 34 LkgKtIaIIGyGSqG~---AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~----~dG-F----~--v~~~~Ea---~~ 96 (487)
T PRK05225 34 LKGKKIVIVGCGAQGL---NQGLNMRDSGLDISYALRKEAIAEKRASWRKAT----ENG-F----K--VGTYEEL---IP 96 (487)
T ss_pred hCCCEEEEEccCHHHH---HHhCCCccccceeEEeccccccccccchHHHHH----hcC-C----c--cCCHHHH---HH
Confidence 4579999999998877 222211 2355566 5566666655543 346 3 1 2343333 34
Q ss_pred CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205 203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKG 243 (535)
Q Consensus 203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~G 243 (535)
..|+|++..-- .....+.+++.+.||||..|.+ .||
T Consensus 97 ~ADvVviLlPD---t~q~~v~~~i~p~LK~Ga~L~f--sHG 132 (487)
T PRK05225 97 QADLVINLTPD---KQHSDVVRAVQPLMKQGAALGY--SHG 132 (487)
T ss_pred hCCEEEEcCCh---HHHHHHHHHHHhhCCCCCEEEe--cCC
Confidence 68999974322 2467777999999999999988 465
No 355
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=93.69 E-value=0.55 Score=46.75 Aligned_cols=98 Identities=15% Similarity=0.142 Sum_probs=65.4
Q ss_pred CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205 128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI 207 (535)
Q Consensus 128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV 207 (535)
.+.++.+||-+|+|.+|..++.+|+. .|.+|++++.+++..+.+++ .| ...-+.....+.... ..+.+|+|
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~--~G~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~~--~~~~~d~v 229 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARA--MGFETVAITRSPDKRELARK----LG-ADEVVDSGAELDEQA--AAGGADVI 229 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----hC-CcEEeccCCcchHHh--ccCCCCEE
Confidence 45788999999999999999999884 58899999999988776644 34 111111111111100 11469988
Q ss_pred EeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+-. .. ....+..+.+.|+++|.++.-.
T Consensus 230 i~~-~~-----~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 230 LVT-VV-----SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EEC-CC-----cHHHHHHHHHhcccCCEEEEEC
Confidence 853 22 1346788889999999988754
No 356
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=93.68 E-value=0.039 Score=59.35 Aligned_cols=100 Identities=24% Similarity=0.322 Sum_probs=60.5
Q ss_pred EEEEEccCCChhhHHH---HHhh-cCCCcEEEEEeCChhHHHHHHHHHhhcC-CcCCCeEEE-EccccccccCCCCcceE
Q 041205 134 KVAFVGSGPMPLTSII---LASQ-HMKSTHFDNIDIDETANNLARRIVSSDD-EIEKRMKFL-TCDIMEVKEKLGEYDCI 207 (535)
Q Consensus 134 RVLeIGSGplPlTAI~---LAk~-~l~Ga~VtGIDIDpeAIelAR~li~~lG-~Ls~rI~Fi-~GDA~el~~dL~~FDvV 207 (535)
+|..||.|.+|+|.-. ++.. ...|.+|+-+|+|++.++.....+++.- ......++. +.|.. ..+.+.|+|
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~---eal~~AD~V 78 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRR---EALDGADFV 78 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHH---HHhcCCCEE
Confidence 7999999998888444 4422 3567899999999998887766544320 011223443 44532 234678999
Q ss_pred EeccccCC---------hhhHHHHHHHHHhhcccCeEE
Q 041205 208 ILAALAGN---------EEEKAKILGHIRKYMKEGGVL 236 (535)
Q Consensus 208 fiaALVgm---------~edK~~VL~eL~rvLKPGGvL 236 (535)
+.+..++- .+-|..++.++-+.+.|||++
T Consensus 79 i~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~ 116 (423)
T cd05297 79 INTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIF 116 (423)
T ss_pred EEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHH
Confidence 98877532 233444454444455555543
No 357
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=93.59 E-value=0.57 Score=50.18 Aligned_cols=101 Identities=17% Similarity=0.310 Sum_probs=61.0
Q ss_pred CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh---cCCcC-----CCeEEEE-ccccccccCCCC
Q 041205 133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSS---DDEIE-----KRMKFLT-CDIMEVKEKLGE 203 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~---lG~Ls-----~rI~Fi~-GDA~el~~dL~~ 203 (535)
++|..||.|-+|++.-.+.. .|-.|+++|+|++.++..++-... -| +. .+.+|.. .|..+ ...+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA---~G~~VigvD~d~~kv~~l~~g~~~~~e~~-l~~~l~~~~~~l~~t~~~~~---~~~~ 73 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA---QNHEVVALDILPSRVAMLNDRISPIVDKE-IQQFLQSDKIHFNATLDKNE---AYRD 73 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH---hCCcEEEEECCHHHHHHHHcCCCCCCCcC-HHHHHHhCCCcEEEecchhh---hhcC
Confidence 47999999988876554433 267899999999999988762111 01 00 1122221 11111 1245
Q ss_pred cceEEeccccCC--------hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 204 YDCIILAALAGN--------EEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 204 FDvVfiaALVgm--------~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
.|+||+.-.-.. ...-..+++.+.+ ++||.+++..+.
T Consensus 74 ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~ST 118 (388)
T PRK15057 74 ADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKST 118 (388)
T ss_pred CCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeee
Confidence 799987522111 1233566777877 799998888874
No 358
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=93.58 E-value=0.25 Score=49.46 Aligned_cols=100 Identities=22% Similarity=0.312 Sum_probs=65.6
Q ss_pred CCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-cc--cCCCC
Q 041205 128 GVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VK--EKLGE 203 (535)
Q Consensus 128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~--~dL~~ 203 (535)
.+.++.+||-.|+|++|..++.+|+. .|. .|++++.+++..+.++++ | ...-+.....+..+ +. ....+
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~--~g~~~v~~~~~~~~~~~~~~~~----g-~~~vi~~~~~~~~~~i~~~~~~~~ 236 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARL--LGAARIIAVDSNPERLDLAKEA----G-ATDIINPKNGDIVEQILELTGGRG 236 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEeCCHHHHHHHHHh----C-CcEEEcCCcchHHHHHHHHcCCCC
Confidence 45678999999999999999999994 464 899999998887776653 3 11111111111111 11 11245
Q ss_pred cceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 204 FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+|+||-. ++ -...+....+.|+++|+++.-.
T Consensus 237 ~d~vld~--~g----~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 237 VDCVIEA--VG----FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred CcEEEEc--cC----CHHHHHHHHHHhhcCCEEEEEc
Confidence 9988853 22 1247888889999999988653
No 359
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.56 E-value=0.54 Score=49.70 Aligned_cols=95 Identities=18% Similarity=0.145 Sum_probs=64.5
Q ss_pred CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc----cCCCCcceEE
Q 041205 133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK----EKLGEYDCII 208 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~----~dL~~FDvVf 208 (535)
++|+.+|+|.+|........ ..|..|+.+|.|++.++.+++ ..| +.++.||+.+.. .....+|.|+
T Consensus 1 m~viIiG~G~ig~~~a~~L~--~~g~~v~vid~~~~~~~~~~~---~~~-----~~~~~gd~~~~~~l~~~~~~~a~~vi 70 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLS--GENNDVTVIDTDEERLRRLQD---RLD-----VRTVVGNGSSPDVLREAGAEDADLLI 70 (453)
T ss_pred CEEEEECCCHHHHHHHHHHH--hCCCcEEEEECCHHHHHHHHh---hcC-----EEEEEeCCCCHHHHHHcCCCcCCEEE
Confidence 58999999988777655433 257899999999998776553 234 578889986421 1245799888
Q ss_pred eccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+...- .+...++....+.+.|...++++.
T Consensus 71 ~~~~~---~~~n~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 71 AVTDS---DETNMVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred EecCC---hHHHHHHHHHHHHhcCCCeEEEEE
Confidence 75332 344555666677776776666664
No 360
>PRK15076 alpha-galactosidase; Provisional
Probab=93.44 E-value=0.093 Score=56.90 Aligned_cols=79 Identities=24% Similarity=0.316 Sum_probs=52.8
Q ss_pred CEEEEEccCCChhhHHHH---H-hhcCCCcEEEEEeCChhHHHHHHHHHhhcCC-cCCCeEEE-EccccccccCCCCcce
Q 041205 133 KKVAFVGSGPMPLTSIIL---A-SQHMKSTHFDNIDIDETANNLARRIVSSDDE-IEKRMKFL-TCDIMEVKEKLGEYDC 206 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~L---A-k~~l~Ga~VtGIDIDpeAIelAR~li~~lG~-Ls~rI~Fi-~GDA~el~~dL~~FDv 206 (535)
.+|..||+|.+|+|.-++ + ...+++.+|+-+|+|++..+.+..++++.-. ....+++. ++|.. ..+.+.|+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~---eal~dADf 78 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRR---EALQGADY 78 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHH---HHhCCCCE
Confidence 489999999888775442 2 1125677999999999999876666554210 11235555 45532 33467899
Q ss_pred EEeccccC
Q 041205 207 IILAALAG 214 (535)
Q Consensus 207 VfiaALVg 214 (535)
|+..+.+|
T Consensus 79 Vv~ti~vg 86 (431)
T PRK15076 79 VINAIQVG 86 (431)
T ss_pred EeEeeeeC
Confidence 99988886
No 361
>PLN02688 pyrroline-5-carboxylate reductase
Probab=93.41 E-value=0.38 Score=47.53 Aligned_cols=90 Identities=21% Similarity=0.314 Sum_probs=56.1
Q ss_pred CEEEEEccCCChhhHHH-HHhh-cCCCcEEEEE-eCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 133 KKVAFVGSGPMPLTSII-LASQ-HMKSTHFDNI-DIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~-LAk~-~l~Ga~VtGI-DIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
++|.+||+|.+|.+-.. |.+. +.+...|+.+ |.+++..+.+ ...| . .. ..+..++ ....|+||+
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~----~~~g-~----~~-~~~~~e~---~~~aDvVil 67 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVF----QSLG-V----KT-AASNTEV---VKSSDVIIL 67 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHH----HHcC-C----EE-eCChHHH---HhcCCEEEE
Confidence 57999999988765322 2221 1122378888 9998876443 2346 2 22 2232222 235799998
Q ss_pred ccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205 210 AALAGNEEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 210 aALVgm~edK~~VL~eL~rvLKPGGvLVv 238 (535)
.- .. .....++..+...++||.+++.
T Consensus 68 ~v-~~--~~~~~vl~~l~~~~~~~~~iIs 93 (266)
T PLN02688 68 AV-KP--QVVKDVLTELRPLLSKDKLLVS 93 (266)
T ss_pred EE-Cc--HHHHHHHHHHHhhcCCCCEEEE
Confidence 64 32 5678888888888888877664
No 362
>PHA01634 hypothetical protein
Probab=93.40 E-value=0.42 Score=45.29 Aligned_cols=74 Identities=8% Similarity=0.121 Sum_probs=54.6
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII 208 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf 208 (535)
-.+++|++||.+ +|-|||+++- .| -.|++++.++...++.+++++-.....+.+. . .+++...++||+..
T Consensus 27 vk~KtV~dIGA~-iGdSaiYF~l---~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~--~---~eW~~~Y~~~Di~~ 97 (156)
T PHA01634 27 VYQRTIQIVGAD-CGSSALYFLL---RGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVM--K---GEWNGEYEDVDIFV 97 (156)
T ss_pred ecCCEEEEecCC-ccchhhHHhh---cCccEEEEeccCHHHHHHHHHHhhhheeeeceee--c---ccccccCCCcceEE
Confidence 468999999997 8999999976 45 4799999999999999998765431111111 1 13555667899988
Q ss_pred eccc
Q 041205 209 LAAL 212 (535)
Q Consensus 209 iaAL 212 (535)
++.-
T Consensus 98 iDCe 101 (156)
T PHA01634 98 MDCE 101 (156)
T ss_pred EEcc
Confidence 8854
No 363
>PRK08655 prephenate dehydrogenase; Provisional
Probab=93.38 E-value=0.33 Score=52.65 Aligned_cols=89 Identities=13% Similarity=0.234 Sum_probs=58.4
Q ss_pred CEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205 133 KKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA 211 (535)
Q Consensus 133 kRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA 211 (535)
++|+.|| +|.+|.+...... ..|..|+++|.+++.. .+.....| . .+ ..|.. ......|+|+++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~--~~G~~V~v~~r~~~~~---~~~a~~~g-v----~~-~~~~~---e~~~~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLK--EKGFEVIVTGRDPKKG---KEVAKELG-V----EY-ANDNI---DAAKDADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHH--HCCCEEEEEECChHHH---HHHHHHcC-C----ee-ccCHH---HHhccCCEEEEec
Confidence 4799997 7887776544443 2567899999998764 22333445 2 22 22222 2235689999975
Q ss_pred ccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205 212 LAGNEEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 212 LVgm~edK~~VL~eL~rvLKPGGvLVv 238 (535)
-. ..-..++..+.+.++||.+|+-
T Consensus 67 p~---~~~~~vl~~l~~~l~~~~iViD 90 (437)
T PRK08655 67 PI---NVTEDVIKEVAPHVKEGSLLMD 90 (437)
T ss_pred CH---HHHHHHHHHHHhhCCCCCEEEE
Confidence 54 3557888999999999886654
No 364
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=93.27 E-value=0.4 Score=48.43 Aligned_cols=101 Identities=20% Similarity=0.232 Sum_probs=67.0
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcE-EEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcc----cccccc--
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTH-FDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD----IMEVKE-- 199 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~-VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GD----A~el~~-- 199 (535)
..+.++.+||-.|+|++|..++.+|+. .|.+ |+.++.+++..+.++++ | ...-+....-+ ..++..
T Consensus 158 ~~~~~g~~vlI~g~g~vG~~a~~lak~--~G~~~v~~~~~~~~~~~~~~~~----g-~~~vi~~~~~~~~~~~~~~~~~~ 230 (343)
T cd05285 158 AGVRPGDTVLVFGAGPIGLLTAAVAKA--FGATKVVVTDIDPSRLEFAKEL----G-ATHTVNVRTEDTPESAEKIAELL 230 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHHc----C-CcEEeccccccchhHHHHHHHHh
Confidence 456789999999999999999999994 5776 99999998887766553 4 21111111111 111111
Q ss_pred CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
....||+|+-...- ...+....+.|+++|.++.-.
T Consensus 231 ~~~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 231 GGKGPDVVIECTGA------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 11349999864222 236788899999999988643
No 365
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.26 E-value=0.35 Score=52.10 Aligned_cols=102 Identities=21% Similarity=0.199 Sum_probs=81.8
Q ss_pred CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-CCcceEEec
Q 041205 132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-GEYDCIILA 210 (535)
Q Consensus 132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-~~FDvVfia 210 (535)
+.+|+|-=|| .|+=+|.+|.. .+..+|+-=|++|+++++.+++++... . .+...+..|+..+.... ..||+|=+|
T Consensus 53 ~~~v~Dalsa-tGiRgIRya~E-~~~~~v~lNDisp~Avelik~Nv~~N~-~-~~~~v~n~DAN~lm~~~~~~fd~IDiD 128 (380)
T COG1867 53 PKRVLDALSA-TGIRGIRYAVE-TGVVKVVLNDISPKAVELIKENVRLNS-G-EDAEVINKDANALLHELHRAFDVIDID 128 (380)
T ss_pred CeEEeecccc-cchhHhhhhhh-cCccEEEEccCCHHHHHHHHHHHHhcC-c-ccceeecchHHHHHHhcCCCccEEecC
Confidence 8999999998 58999999884 333489999999999999999999873 1 35556668987776654 459999888
Q ss_pred cccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 211 ALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 211 ALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
-.| ....+++...+-++.||+|.+--.
T Consensus 129 -PFG---SPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 129 -PFG---SPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred -CCC---CCchHHHHHHHHhhcCCEEEEEec
Confidence 444 578899999999999999988553
No 366
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=93.22 E-value=0.31 Score=49.17 Aligned_cols=99 Identities=20% Similarity=0.191 Sum_probs=65.3
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCcE-EEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-c--ccCCCCc
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTH-FDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-V--KEKLGEY 204 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~-VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l--~~dL~~F 204 (535)
..++.+|+-.|+|++|..++.+|+. .|.+ |++++.+++..+.++++ | ...-+.....+..+ + .....+|
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~--~G~~~v~~~~~~~~~~~~~~~~----g-~~~~v~~~~~~~~~~l~~~~~~~~~ 231 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKA--SGAYPVIVSDPNEYRLELAKKM----G-ATYVVNPFKEDVVKEVADLTDGEGV 231 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHHh----C-CcEEEcccccCHHHHHHHhcCCCCC
Confidence 4678999999999999999999994 5776 88998888777766543 5 21111111122111 1 1122359
Q ss_pred ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
|+|+-...- ...+..+.+.|+++|.++.-.
T Consensus 232 d~vld~~g~------~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 232 DVFLEMSGA------PKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred CEEEECCCC------HHHHHHHHHhhcCCCEEEEEc
Confidence 999864221 345788889999999988754
No 367
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.21 E-value=0.35 Score=46.87 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=77.7
Q ss_pred hHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEE
Q 041205 112 YVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRIVSSDDEIEKRMKFL 190 (535)
Q Consensus 112 Yv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi 190 (535)
|++-+-+..+....++...+.-+.+|+|||- |- |.+|- +.-| -.-+|+|++|=.+..+|-..-+.| .+++..|.
T Consensus 53 YVpAtteQv~nVLSll~~n~~GklvDlGSGD-GR--iVlaa-ar~g~~~a~GvELNpwLVaysrl~a~R~g-~~k~trf~ 127 (199)
T KOG4058|consen 53 YVPATTEQVENVLSLLRGNPKGKLVDLGSGD-GR--IVLAA-ARCGLRPAVGVELNPWLVAYSRLHAWRAG-CAKSTRFR 127 (199)
T ss_pred ccCccHHHHHHHHHHccCCCCCcEEeccCCC-ce--eehhh-hhhCCCcCCceeccHHHHHHHHHHHHHHh-cccchhhh
Confidence 4666655555555556557778999999995 33 33333 1123 456899999999999998888889 88999999
Q ss_pred EccccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205 191 TCDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 191 ~GDA~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVv 238 (535)
.-|.- ..++.+|..|.+...-.| ...+-..+..-|+.|..++.
T Consensus 128 Rkdlw--K~dl~dy~~vviFgaes~---m~dLe~KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 128 RKDLW--KVDLRDYRNVVIFGAESV---MPDLEDKLRTELPANTRVVA 170 (199)
T ss_pred hhhhh--hccccccceEEEeehHHH---HhhhHHHHHhhCcCCCeEEE
Confidence 99984 456777765555422211 22333445556777776654
No 368
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.20 E-value=0.54 Score=53.18 Aligned_cols=96 Identities=16% Similarity=0.080 Sum_probs=69.8
Q ss_pred CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc----cCCCCcceE
Q 041205 132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK----EKLGEYDCI 207 (535)
Q Consensus 132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~----~dL~~FDvV 207 (535)
..+|+-+|+|.+|........ ..|..++.||.|++.++.+++ .| ...+.||+.+.. ...++.|.|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~--~~g~~vvvID~d~~~v~~~~~----~g-----~~v~~GDat~~~~L~~agi~~A~~v 468 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLL--SSGVKMTVLDHDPDHIETLRK----FG-----MKVFYGDATRMDLLESAGAAKAEVL 468 (621)
T ss_pred cCcEEEEecChHHHHHHHHHH--hCCCCEEEEECCHHHHHHHHh----cC-----CeEEEEeCCCHHHHHhcCCCcCCEE
Confidence 479999999998887654433 257789999999999998875 35 367889998632 234568988
Q ss_pred EeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
++...- .+....+-...|.+.|+..+++|..
T Consensus 469 vv~~~d---~~~n~~i~~~ar~~~p~~~iiaRa~ 499 (621)
T PRK03562 469 INAIDD---PQTSLQLVELVKEHFPHLQIIARAR 499 (621)
T ss_pred EEEeCC---HHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 875332 3455555566777889988888875
No 369
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=93.19 E-value=0.27 Score=50.66 Aligned_cols=100 Identities=15% Similarity=0.193 Sum_probs=66.2
Q ss_pred CCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-ccc-CCCCc
Q 041205 128 GVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VKE-KLGEY 204 (535)
Q Consensus 128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~~-dL~~F 204 (535)
.+.++++||-.|+|++|..++.+|+. .|. .|+++|.+++..+.+++ .| ...-+.....+..+ +.. ...+|
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~--~G~~~v~~~~~~~~k~~~~~~----~g-~~~~i~~~~~~~~~~v~~~~~~~~ 255 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKI--AGCTTIIAVDIVDSRLELAKE----LG-ATHVINPKEEDLVAAIREITGGGV 255 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----cC-CcEEecCCCcCHHHHHHHHhCCCC
Confidence 45778999999999999999999994 567 69999999988776654 34 21001110111111 110 12359
Q ss_pred ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
|+|+-...- ...+....+.++++|.++.-.
T Consensus 256 d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 256 DYALDTTGV------PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred cEEEECCCC------cHHHHHHHHHhccCCEEEEeC
Confidence 998864322 246788899999999988754
No 370
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=93.16 E-value=0.34 Score=53.59 Aligned_cols=109 Identities=14% Similarity=0.082 Sum_probs=69.5
Q ss_pred chhhHHhHHHHHHHHHHhh-CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCe
Q 041205 109 YENYVKLAKLEYGALIENT-GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRM 187 (535)
Q Consensus 109 y~NYv~LirlE~~lL~~~~-~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI 187 (535)
++|-.-+...-...+.+.. ..-.+++|+-||+|.+|......++ ..|++|+.+|+|+.....|.. .| .
T Consensus 230 aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~--a~Ga~ViV~e~dp~~a~~A~~----~G-~---- 298 (476)
T PTZ00075 230 FDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALR--GFGARVVVTEIDPICALQAAM----EG-Y---- 298 (476)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCchhHHHHHh----cC-c----
Confidence 3443333333333433322 2357899999999999988877777 368999999999876544332 35 2
Q ss_pred EEEEccccccccCCCCcceEEeccccCChhhHHHHH-HHHHhhcccCeEEEEE
Q 041205 188 KFLTCDIMEVKEKLGEYDCIILAALAGNEEEKAKIL-GHIRKYMKEGGVLLVR 239 (535)
Q Consensus 188 ~Fi~GDA~el~~dL~~FDvVfiaALVgm~edK~~VL-~eL~rvLKPGGvLVvR 239 (535)
++ .+..++ +...|+|+.... ...++ .+....||||++|+--
T Consensus 299 ~~--~~leel---l~~ADIVI~atG------t~~iI~~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 299 QV--VTLEDV---VETADIFVTATG------NKDIITLEHMRRMKNNAIVGNI 340 (476)
T ss_pred ee--ccHHHH---HhcCCEEEECCC------cccccCHHHHhccCCCcEEEEc
Confidence 22 122222 356899998632 23355 3677789999998663
No 371
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.14 E-value=0.62 Score=51.34 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=65.8
Q ss_pred CEEEEEccCCChhhH-HHHHhhcCCCcEEEEEeCChhHHHHHHHH---HhhcCC-------cCCCeEEEEccccccccCC
Q 041205 133 KKVAFVGSGPMPLTS-IILASQHMKSTHFDNIDIDETANNLARRI---VSSDDE-------IEKRMKFLTCDIMEVKEKL 201 (535)
Q Consensus 133 kRVLeIGSGplPlTA-I~LAk~~l~Ga~VtGIDIDpeAIelAR~l---i~~lG~-------Ls~rI~Fi~GDA~el~~dL 201 (535)
++|.-||+|-+|++. .+||. .-.|..|+|+|+|++.++.-++- +..-|+ .+.+.+|. .|.. ...
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~-~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t-~~~~---~~i 76 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIAL-KCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFS-TDVE---KHV 76 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHh-cCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEE-cCHH---HHH
Confidence 689999999988764 45555 23468899999999998874432 111120 01234342 2221 123
Q ss_pred CCcceEEecccc-----------CC-hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 202 GEYDCIILAALA-----------GN-EEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 202 ~~FDvVfiaALV-----------gm-~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
...|+||+.--. .. ...-..+.+.+.+++++|.++++++.
T Consensus 77 ~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~ST 128 (473)
T PLN02353 77 AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (473)
T ss_pred hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCC
Confidence 457999875211 11 23457888889999999999999884
No 372
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=93.14 E-value=0.63 Score=49.54 Aligned_cols=93 Identities=16% Similarity=0.200 Sum_probs=60.6
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
-.+++|..||.|.+|..-...++ -.|.+|++.|...... ..+...| + ++ .+..++ ....|+|++
T Consensus 14 LkgKtVGIIG~GsIG~amA~nL~--d~G~~ViV~~r~~~s~----~~A~~~G-~----~v--~sl~Ea---ak~ADVV~l 77 (335)
T PRK13403 14 LQGKTVAVIGYGSQGHAQAQNLR--DSGVEVVVGVRPGKSF----EVAKADG-F----EV--MSVSEA---VRTAQVVQM 77 (335)
T ss_pred hCcCEEEEEeEcHHHHHHHHHHH--HCcCEEEEEECcchhh----HHHHHcC-C----EE--CCHHHH---HhcCCEEEE
Confidence 45899999999998876544444 3688999988554333 3344456 2 22 243332 245799998
Q ss_pred ccccCChhhHHHHH-HHHHhhcccCeEEEEEcccc
Q 041205 210 AALAGNEEEKAKIL-GHIRKYMKEGGVLLVRSAKG 243 (535)
Q Consensus 210 aALVgm~edK~~VL-~eL~rvLKPGGvLVvRsa~G 243 (535)
..-. ... ..++ ..+...|+||.+|++ +||
T Consensus 78 lLPd--~~t-~~V~~~eil~~MK~GaiL~f--~hg 107 (335)
T PRK13403 78 LLPD--EQQ-AHVYKAEVEENLREGQMLLF--SHG 107 (335)
T ss_pred eCCC--hHH-HHHHHHHHHhcCCCCCEEEE--CCC
Confidence 5332 234 4555 579999999999888 564
No 373
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.03 E-value=0.37 Score=49.29 Aligned_cols=96 Identities=11% Similarity=0.153 Sum_probs=56.5
Q ss_pred CCCEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC----cCCCeEEEEccccccccCCCCcc
Q 041205 131 QLKKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSSDDE----IEKRMKFLTCDIMEVKEKLGEYD 205 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~----Ls~rI~Fi~GDA~el~~dL~~FD 205 (535)
..++|+.||+|++|.+--. |++ .|..|+-+..++. +. +...|. ......+....+...+.....||
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~---~g~~V~~~~r~~~--~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D 74 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLAR---AGFDVHFLLRSDY--EA----VRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCD 74 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHH---CCCeEEEEEeCCH--HH----HHhCCeEEEeCCCCeeecCceEEcchhhcCCCC
Confidence 4579999999998875333 333 5788888888763 21 223231 00111221111111122345799
Q ss_pred eEEeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205 206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVv 238 (535)
+||++ .+. .+-..++..+...++|++.++.
T Consensus 75 ~vila-vK~--~~~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 75 WVLVG-LKT--TANALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred EEEEE-ecC--CChHhHHHHHhhhcCCCCEEEE
Confidence 99996 443 2346688888888999887654
No 374
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=93.01 E-value=0.39 Score=55.32 Aligned_cols=102 Identities=21% Similarity=0.234 Sum_probs=72.1
Q ss_pred CCCEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhhc-------CCc--------CCCeEEEEccc
Q 041205 131 QLKKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSSD-------DEI--------EKRMKFLTCDI 194 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l-------G~L--------s~rI~Fi~GDA 194 (535)
+-++|.-||+|.+|-.--. +|. .|..|+-+|.++++++.+++.+++. |.+ -.+|++. .|
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~---~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~- 386 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSAS---KGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LS- 386 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CC-
Confidence 3468999999998765433 334 6899999999999999887765421 211 1244442 12
Q ss_pred cccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 195 MEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 195 ~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
+ ..+.+.|+|+=+ .....+-|.++|.++-++++|+++|...+.
T Consensus 387 --~-~~~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasnTS 429 (714)
T TIGR02437 387 --Y-AGFDNVDIVVEA-VVENPKVKAAVLAEVEQHVREDAILASNTS 429 (714)
T ss_pred --H-HHhcCCCEEEEc-CcccHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 1 234678999864 333357899999999999999999988764
No 375
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.01 E-value=0.55 Score=49.98 Aligned_cols=99 Identities=19% Similarity=0.251 Sum_probs=61.3
Q ss_pred CEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHH------------Hhh-cCCcCCCeEEEEccccccc
Q 041205 133 KKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRI------------VSS-DDEIEKRMKFLTCDIMEVK 198 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~l------------i~~-lG~Ls~rI~Fi~GDA~el~ 198 (535)
++|..||+|.+|.+.-. |++ .|.+|+++|++++.++.-++- +.+ .. ..++++. .|..+
T Consensus 1 mkI~vIGlG~~G~~lA~~La~---~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~--~g~l~~~-~~~~~-- 72 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLAD---LGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALA--AGRLRAT-TDYED-- 72 (411)
T ss_pred CEEEEECCCchhHHHHHHHHh---cCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhh--cCCeEEE-CCHHH--
Confidence 47999999998876433 344 678999999999987653321 000 00 0124432 22221
Q ss_pred cCCCCcceEEeccccCC-------hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 199 EKLGEYDCIILAALAGN-------EEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 199 ~dL~~FDvVfiaALVgm-------~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
.....|+||+.-.-.. ...-..+++.+.+.+++|.+++..+
T Consensus 73 -~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 73 -AIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred -HHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 1356899998633211 1135667788888999998888766
No 376
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=92.97 E-value=0.43 Score=49.59 Aligned_cols=100 Identities=24% Similarity=0.268 Sum_probs=67.3
Q ss_pred CCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc---c----cccccc
Q 041205 128 GVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC---D----IMEVKE 199 (535)
Q Consensus 128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G---D----A~el~~ 199 (535)
.+.++.+||-.|+|++|..++.+|+. .|+ +|++++.+++..+.+++ .| ...-+..... + +.++.
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~--~G~~~vi~~~~~~~~~~~~~~----~g-~~~~v~~~~~~~~~~~~~v~~~~- 271 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKA--AGASKVIAFEISEERRNLAKE----MG-ADYVFNPTKMRDCLSGEKVMEVT- 271 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHH----cC-CCEEEcccccccccHHHHHHHhc-
Confidence 56788999999999999999999994 567 79999999886655554 45 3111111110 1 11111
Q ss_pred CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
...++|+|+-. .| .+...+.++.+.|+++|+++.-.
T Consensus 272 ~g~gvDvvld~--~g---~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 272 KGWGADIQVEA--AG---APPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred CCCCCCEEEEC--CC---CcHHHHHHHHHHHHcCCEEEEEC
Confidence 11359988743 33 34567888889999999998754
No 377
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.89 E-value=0.4 Score=51.55 Aligned_cols=74 Identities=9% Similarity=-0.049 Sum_probs=49.9
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChh-HHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDET-ANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpe-AIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
.+++|+.||.|..|+++..++. ..|.+|+.+|.++. ......+.+++.| |++..++..+ ....+|+|++
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~--~~G~~V~~~d~~~~~~~~~~~~~l~~~g-----v~~~~~~~~~---~~~~~D~Vv~ 84 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALL--ELGARVTVVDDGDDERHRALAAILEALG-----ATVRLGPGPT---LPEDTDLVVT 84 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCchhhhHHHHHHHHHcC-----CEEEECCCcc---ccCCCCEEEE
Confidence 4689999999998887665554 36889999996653 3222223344555 6777776433 2245899998
Q ss_pred ccccC
Q 041205 210 AALAG 214 (535)
Q Consensus 210 aALVg 214 (535)
+..+.
T Consensus 85 s~Gi~ 89 (480)
T PRK01438 85 SPGWR 89 (480)
T ss_pred CCCcC
Confidence 86663
No 378
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=92.87 E-value=0.54 Score=47.91 Aligned_cols=92 Identities=15% Similarity=0.152 Sum_probs=57.1
Q ss_pred CEEEEEccCCChhhH-HHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205 133 KKVAFVGSGPMPLTS-IILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA 211 (535)
Q Consensus 133 kRVLeIGSGplPlTA-I~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA 211 (535)
++|.+||+|.+|.+- ..|++ .|.+|+.+|.+++.++... ..| . .. ..+..++.......|+|++.-
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~---~g~~v~v~dr~~~~~~~~~----~~g-~----~~-~~~~~e~~~~~~~~dvvi~~v 67 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLR---GGHEVVGYDRNPEAVEALA----EEG-A----TG-ADSLEELVAKLPAPRVVWLMV 67 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHH---CCCeEEEEECCHHHHHHHH----HCC-C----ee-cCCHHHHHhhcCCCCEEEEEe
Confidence 479999999887653 22333 5789999999998876543 345 2 21 233333332222358888753
Q ss_pred ccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205 212 LAGNEEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 212 LVgm~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
..+ +.-..++..+...+++|.+++--
T Consensus 68 ~~~--~~~~~v~~~l~~~l~~g~ivid~ 93 (301)
T PRK09599 68 PAG--EITDATIDELAPLLSPGDIVIDG 93 (301)
T ss_pred cCC--cHHHHHHHHHHhhCCCCCEEEeC
Confidence 221 24466778888889998766543
No 379
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=92.85 E-value=0.77 Score=46.15 Aligned_cols=103 Identities=20% Similarity=0.197 Sum_probs=72.4
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcC-CC--cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc-----CC
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHM-KS--THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-----KL 201 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l-~G--a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-----dL 201 (535)
.+|+-|.|+|+ ..|.|++++|.-+. -| .+|+++|||-...+.+-.- ..+|.|+.|+..+..- .+
T Consensus 68 ~~P~lvIE~Gs-~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-------~p~i~f~egss~dpai~eqi~~~ 139 (237)
T COG3510 68 LQPSLVIEFGS-RHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-------VPDILFIEGSSTDPAIAEQIRRL 139 (237)
T ss_pred cCCceeEeecc-ccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-------CCCeEEEeCCCCCHHHHHHHHHH
Confidence 57999999999 58999999987432 24 7899999997665443221 1479999999865221 11
Q ss_pred -CCcc--eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 202 -GEYD--CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 202 -~~FD--vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
+.|- +|++++..+| +.--..++-+.+.|..|-.+++-+.
T Consensus 140 ~~~y~kIfvilDsdHs~-~hvLAel~~~~pllsaG~Y~vVeDs 181 (237)
T COG3510 140 KNEYPKIFVILDSDHSM-EHVLAELKLLAPLLSAGDYLVVEDS 181 (237)
T ss_pred hcCCCcEEEEecCCchH-HHHHHHHHHhhhHhhcCceEEEecc
Confidence 2343 5567777755 5555666677889999999988763
No 380
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=92.82 E-value=0.97 Score=44.98 Aligned_cols=98 Identities=21% Similarity=0.297 Sum_probs=66.7
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcE-EEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc----ccCC
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTH-FDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV----KEKL 201 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~-VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el----~~dL 201 (535)
..+.++.+||-+|+|.+|..++.+|+. .|.+ |+.++.+++..+.+++ .| .. .++..+-.+. ....
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~--~G~~~v~~~~~~~~~~~~~~~----~g-~~---~~~~~~~~~~~~~~~~~~ 224 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKL--NGASRVTVAEPNEEKLELAKK----LG-AT---ETVDPSREDPEAQKEDNP 224 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHH----hC-Ce---EEecCCCCCHHHHHHhcC
Confidence 456788999999999889999999994 5776 8999999888776643 45 21 2222111110 1122
Q ss_pred CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
..+|+|+-. ++ ....+....+.|+++|.++.-.
T Consensus 225 ~~vd~v~~~--~~----~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 225 YGFDVVIEA--TG----VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCCcEEEEC--CC----ChHHHHHHHHHHhcCCEEEEEe
Confidence 459999863 21 2457788889999999998754
No 381
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=92.82 E-value=1.2 Score=46.44 Aligned_cols=105 Identities=23% Similarity=0.255 Sum_probs=66.7
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhH-HHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETA-NNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI 207 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeA-IelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV 207 (535)
+.+.+|.-||+|.+|.+..+.... .+- .+++-+|++++. -..+..+..... +..++.+..+|. .++.+.|+|
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~-~~~~~el~L~D~~~~~~~g~~~Dl~~~~~-~~~~~~i~~~~~----~~~~~adiv 77 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVN-QGIADELVIIDINKEKAEGDAMDLSHAVP-FTSPTKIYAGDY----SDCKDADLV 77 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHh-cCCCCEEEEEeCCCchhHHHHHHHHhhcc-ccCCeEEEeCCH----HHhCCCCEE
Confidence 567899999999999887775542 222 379999998875 466666665554 324566665553 235679999
Q ss_pred Eecccc----CC-h----hhHHHHHHHHHhhc---ccCeEEEEEc
Q 041205 208 ILAALA----GN-E----EEKAKILGHIRKYM---KEGGVLLVRS 240 (535)
Q Consensus 208 fiaALV----gm-~----edK~~VL~eL~rvL---KPGGvLVvRs 240 (535)
++.+.+ || . ..-..++.++...+ .|+|.+++-+
T Consensus 78 Iitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 78 VITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 988776 33 1 12234444444333 3677766644
No 382
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.81 E-value=0.59 Score=47.80 Aligned_cols=98 Identities=18% Similarity=0.195 Sum_probs=66.7
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCC-eEEEEccccccccCC--CCcce
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKR-MKFLTCDIMEVKEKL--GEYDC 206 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~r-I~Fi~GDA~el~~dL--~~FDv 206 (535)
.+++.+||||+-++|+|-.++-+ ...+|.+||..-.-+...-+. +.| +.+...|+..+..+. +..|+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~---gAk~VyavDVG~~Ql~~kLR~-------d~rV~~~E~tN~r~l~~~~~~~~~d~ 147 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQR---GAKHVYAVDVGYGQLHWKLRN-------DPRVIVLERTNVRYLTPEDFTEKPDL 147 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHc---CCcEEEEEEccCCccCHhHhc-------CCcEEEEecCChhhCCHHHcccCCCe
Confidence 67899999999999999877744 446899999986554433221 123 344455554433221 23678
Q ss_pred EEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+++|-.. -.-..+|..+...++||+-++..-
T Consensus 148 ~v~DvSF---ISL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 148 IVIDVSF---ISLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred EEEEeeh---hhHHHHHHHHHHhcCCCceEEEEe
Confidence 8877433 356889999999999998777643
No 383
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=92.80 E-value=0.29 Score=49.01 Aligned_cols=96 Identities=17% Similarity=0.080 Sum_probs=60.0
Q ss_pred CCCEEEEE--ccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc---cCCCCcc
Q 041205 131 QLKKVAFV--GSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK---EKLGEYD 205 (535)
Q Consensus 131 ~pkRVLeI--GSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~---~dL~~FD 205 (535)
++.+++-+ |+|++|..++.+|+. .|++|++++.+++..+.+++ +| ...-+.....+..+.. ....++|
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~--~G~~vi~~~~~~~~~~~~~~----~g-~~~~i~~~~~~~~~~v~~~~~~~~~d 214 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKA--DGIKVINIVRRKEQVDLLKK----IG-AEYVLNSSDPDFLEDLKELIAKLNAT 214 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH----cC-CcEEEECCCccHHHHHHHHhCCCCCc
Confidence 45566664 899999999999993 68999999999988777765 46 2111111111211111 1113589
Q ss_pred eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+||-. +| . .......+.+++||+++.-.
T Consensus 215 ~vid~--~g---~--~~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 215 IFFDA--VG---G--GLTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred EEEEC--CC---c--HHHHHHHHhhCCCCEEEEEE
Confidence 88853 22 1 12345577889999988754
No 384
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.65 E-value=1 Score=46.55 Aligned_cols=100 Identities=21% Similarity=0.255 Sum_probs=62.6
Q ss_pred CEEEEEccCCChhhHHHHHhhcCCC--cEEEEEeCChhHHH-HHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 133 KKVAFVGSGPMPLTSIILASQHMKS--THFDNIDIDETANN-LARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~LAk~~l~G--a~VtGIDIDpeAIe-lAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
++|.-||+|..|.+....... .| .+|+-+|++++..+ .|..+..... +.....+..+|- .++.+.|+|++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~--~g~~~ev~l~D~~~~~~~g~a~dl~~~~~-~~~~~~i~~~d~----~~l~~aDiVii 73 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLL--RGLASEIVLVDINKAKAEGEAMDLAHGTP-FVKPVRIYAGDY----ADCKGADVVVI 73 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHH--cCCCCEEEEEECCchhhhhHHHHHHcccc-ccCCeEEeeCCH----HHhCCCCEEEE
Confidence 479999999988887665442 34 68999999998765 5555554433 223344444543 24577999999
Q ss_pred ccccCChh--h-----------HHHHHHHHHhhcccCeEEEEEc
Q 041205 210 AALAGNEE--E-----------KAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 210 aALVgm~e--d-----------K~~VL~eL~rvLKPGGvLVvRs 240 (535)
.+.....+ . ...+...+.+ ..|.|++++.+
T Consensus 74 ta~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~-~~~~giiiv~t 116 (308)
T cd05292 74 TAGANQKPGETRLDLLKRNVAIFKEIIPQILK-YAPDAILLVVT 116 (308)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEec
Confidence 87763211 1 2344444454 34677777653
No 385
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=92.54 E-value=0.66 Score=52.19 Aligned_cols=96 Identities=17% Similarity=0.136 Sum_probs=68.2
Q ss_pred CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc----cCCCCcceE
Q 041205 132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK----EKLGEYDCI 207 (535)
Q Consensus 132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~----~dL~~FDvV 207 (535)
..+|+-+|+|++|........ ..|-.|+.||.|++.++.+++ .| ...+.||+.+.. ....+.|+|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~--~~g~~vvvID~d~~~v~~~~~----~g-----~~v~~GDat~~~~L~~agi~~A~~v 468 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLM--ANKMRITVLERDISAVNLMRK----YG-----YKVYYGDATQLELLRAAGAEKAEAI 468 (601)
T ss_pred cCCEEEecCchHHHHHHHHHH--hCCCCEEEEECCHHHHHHHHh----CC-----CeEEEeeCCCHHHHHhcCCccCCEE
Confidence 368999999998887554433 257789999999999988764 46 367899998632 133568888
Q ss_pred EeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
++...- .+....+-...|.+.|...+++|..
T Consensus 469 v~~~~d---~~~n~~i~~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 469 VITCNE---PEDTMKIVELCQQHFPHLHILARAR 499 (601)
T ss_pred EEEeCC---HHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 775332 3334344455667899999999875
No 386
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.48 E-value=0.58 Score=53.74 Aligned_cols=102 Identities=15% Similarity=0.118 Sum_probs=72.3
Q ss_pred CCEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhhc-------CCcC--------CCeEEEEcccc
Q 041205 132 LKKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSSD-------DEIE--------KRMKFLTCDIM 195 (535)
Q Consensus 132 pkRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l-------G~Ls--------~rI~Fi~GDA~ 195 (535)
-++|.-||+|.+|-.--. +|. ..|..|+-+|.+++.++.++..+++. |.+. .+|++. .|
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~--~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~-- 383 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTAT--KAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TD-- 383 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHH--HcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CC--
Confidence 478999999998766333 442 26899999999999999987765431 2111 245543 12
Q ss_pred ccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 196 EVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 196 el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
+ ..+.+.|+|+=+ .....+-|.++|.++-++++|+.+|...+.
T Consensus 384 -~-~~~~~aDlViEa-v~E~~~~K~~v~~~le~~~~~~~ilasnTS 426 (708)
T PRK11154 384 -Y-RGFKHADVVIEA-VFEDLALKQQMVAEVEQNCAPHTIFASNTS 426 (708)
T ss_pred -h-HHhccCCEEeec-ccccHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 1 234678998864 333357899999999999999999988763
No 387
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.46 E-value=0.54 Score=54.07 Aligned_cols=100 Identities=22% Similarity=0.252 Sum_probs=71.5
Q ss_pred CEEEEEccCCChhhHH-HHHhhcCCCcEEEEEeCChhHHHHHHHHHhh-------cCCc--------CCCeEEEEccccc
Q 041205 133 KKVAFVGSGPMPLTSI-ILASQHMKSTHFDNIDIDETANNLARRIVSS-------DDEI--------EKRMKFLTCDIME 196 (535)
Q Consensus 133 kRVLeIGSGplPlTAI-~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~-------lG~L--------s~rI~Fi~GDA~e 196 (535)
++|.-||+|.+|-.-- ++|. .|..|+-+|+++++++.++..+++ .|.+ -.+|++. .|.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~---~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-- 387 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSAS---KGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDY-- 387 (715)
T ss_pred ceEEEECCchhHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH--
Confidence 6899999999876633 3444 689999999999999988765432 1211 1345542 222
Q ss_pred cccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 197 VKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 197 l~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
..+.+.|+|+=+ .....+-|.++|.++-++++|+.+|...+.
T Consensus 388 --~~~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasNTS 429 (715)
T PRK11730 388 --AGFERVDVVVEA-VVENPKVKAAVLAEVEQKVREDTILASNTS 429 (715)
T ss_pred --HHhcCCCEEEec-ccCcHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 234678998864 333358899999999999999999988763
No 388
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=92.43 E-value=0.58 Score=46.97 Aligned_cols=101 Identities=21% Similarity=0.291 Sum_probs=67.6
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-cc--cCCCC
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VK--EKLGE 203 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~--~dL~~ 203 (535)
..+.++.+||-.|+|.+|..++.+|+. .|.+|+++..+++..+..++ .| ...-+.....+..+ +. .....
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~--~g~~v~~~~~s~~~~~~~~~----~g-~~~v~~~~~~~~~~~l~~~~~~~~ 227 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKA--RGARVIVVDIDDERLEFARE----LG-ADDTINVGDEDVAARLRELTDGEG 227 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEECCCHHHHHHHHH----hC-CCEEecCcccCHHHHHHHHhCCCC
Confidence 356788999999999899999999994 58999999888887776654 33 21112222212111 11 11235
Q ss_pred cceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 204 FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+|+|+-...- ...+..+.+.|+++|.++.-.
T Consensus 228 vd~vld~~g~------~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 228 ADVVIDATGN------PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CCEEEECCCC------HHHHHHHHHHHhcCCEEEEEc
Confidence 8999864221 346788889999999988643
No 389
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=92.42 E-value=0.88 Score=47.30 Aligned_cols=99 Identities=15% Similarity=0.142 Sum_probs=62.8
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcc--c----ccccc
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD--I----MEVKE 199 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GD--A----~el~~ 199 (535)
..+.++++||-+|+|++|..++.+|+. .|+ +|+.+|.+++..+.+++ +| ...-+.....+ . .++.
T Consensus 186 ~~~~~g~~VlV~G~g~vG~~~~~~a~~--~G~~~Vi~~~~~~~~~~~a~~----lG-a~~~i~~~~~~~~~~~~v~~~~- 257 (373)
T cd08299 186 AKVTPGSTCAVFGLGGVGLSAIMGCKA--AGASRIIAVDINKDKFAKAKE----LG-ATECINPQDYKKPIQEVLTEMT- 257 (373)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----cC-CceEecccccchhHHHHHHHHh-
Confidence 456788999999999999999999994 577 89999999988766644 45 31112211111 1 1111
Q ss_pred CCCCcceEEeccccCChhhHHHHHHH-HHhhcccCeEEEEEc
Q 041205 200 KLGEYDCIILAALAGNEEEKAKILGH-IRKYMKEGGVLLVRS 240 (535)
Q Consensus 200 dL~~FDvVfiaALVgm~edK~~VL~e-L~rvLKPGGvLVvRs 240 (535)
. ..+|+|+-.... ...+.. +...+++||+++.-.
T Consensus 258 ~-~~~d~vld~~g~------~~~~~~~~~~~~~~~G~~v~~g 292 (373)
T cd08299 258 D-GGVDFSFEVIGR------LDTMKAALASCHEGYGVSVIVG 292 (373)
T ss_pred C-CCCeEEEECCCC------cHHHHHHHHhhccCCCEEEEEc
Confidence 1 358988754221 334555 344456788888764
No 390
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.31 E-value=0.45 Score=50.53 Aligned_cols=75 Identities=19% Similarity=0.104 Sum_probs=48.9
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCCh-hHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDE-TANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDp-eAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
.+++|+.+|+|.+|++...... ..|..|+++|.++ +.++....-+...| ++++.+|..+ ...+.+|+|+.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~--~~G~~V~~~d~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~--~~~~~~d~vv~ 74 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLK--KLGAKVILTDEKEEDQLKEALEELGELG-----IELVLGEYPE--EFLEGVDLVVV 74 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCchHHHHHHHHHHHhcC-----CEEEeCCcch--hHhhcCCEEEE
Confidence 4689999999987775444333 3689999999986 33222111223334 5677788654 23356999998
Q ss_pred ccccC
Q 041205 210 AALAG 214 (535)
Q Consensus 210 aALVg 214 (535)
++.+.
T Consensus 75 ~~g~~ 79 (450)
T PRK14106 75 SPGVP 79 (450)
T ss_pred CCCCC
Confidence 77653
No 391
>PRK06223 malate dehydrogenase; Reviewed
Probab=92.22 E-value=0.76 Score=46.74 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=57.6
Q ss_pred CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHH--HhhcCCcCCCeEEE-EccccccccCCCCcceEEe
Q 041205 133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRI--VSSDDEIEKRMKFL-TCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~l--i~~lG~Ls~rI~Fi-~GDA~el~~dL~~FDvVfi 209 (535)
++|..||+|.+|.+....+...-.+ +|+-+|++++.. .+... ...........++. ++|. .++.+.|+|++
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~-~~~~~dl~~~~~~~~~~~~i~~~~d~----~~~~~aDiVii 76 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVP-QGKALDIAEAAPVEGFDTKITGTNDY----EDIAGSDVVVI 76 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchh-HHHHHHHHhhhhhcCCCcEEEeCCCH----HHHCCCCEEEE
Confidence 6899999999888866544421113 999999999875 33322 22211011223343 2342 23467899998
Q ss_pred ccccCC-------------hhhHHHHHHHHHhhcccCeEEEE
Q 041205 210 AALAGN-------------EEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 210 aALVgm-------------~edK~~VL~eL~rvLKPGGvLVv 238 (535)
.+.+.. .+-+..++..+.+.. |++++++
T Consensus 77 ~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv 117 (307)
T PRK06223 77 TAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIV 117 (307)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEE
Confidence 764421 134667777777765 5564444
No 392
>PLN02702 L-idonate 5-dehydrogenase
Probab=92.20 E-value=0.65 Score=47.53 Aligned_cols=101 Identities=15% Similarity=0.226 Sum_probs=66.8
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEE--Eccccc----cc-
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFL--TCDIME----VK- 198 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi--~GDA~e----l~- 198 (535)
..+.++.+||-+|+|++|..++.+|++ .|+ .|+++|.+++..+.+++ .| ....+.+. ..+..+ +.
T Consensus 177 ~~~~~g~~vlI~g~g~vG~~~~~~a~~--~G~~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~ 249 (364)
T PLN02702 177 ANIGPETNVLVMGAGPIGLVTMLAARA--FGAPRIVIVDVDDERLSVAKQ----LG-ADEIVLVSTNIEDVESEVEEIQK 249 (364)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----hC-CCEEEecCcccccHHHHHHHHhh
Confidence 345788999999999999999999994 465 48999999888776665 34 22222221 112111 10
Q ss_pred cCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 199 EKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 199 ~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
.....+|+|+-.... ...+....+.|+++|+++.-.
T Consensus 250 ~~~~~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 250 AMGGGIDVSFDCVGF------NKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred hcCCCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEEc
Confidence 011358988864221 346888899999999988754
No 393
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=92.18 E-value=0.68 Score=47.23 Aligned_cols=92 Identities=18% Similarity=0.245 Sum_probs=56.6
Q ss_pred CEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205 133 KKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA 211 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA 211 (535)
++|.+||+|.+|.+-.. +++ .|..|+.+|.+++..+... ..| . . ...+..++.......|+|++.-
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~---~g~~v~v~dr~~~~~~~~~----~~g-~----~-~~~s~~~~~~~~~~advVi~~v 67 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRE---DGHEVVGYDVNQEAVDVAG----KLG-I----T-ARHSLEELVSKLEAPRTIWVMV 67 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHH----HCC-C----e-ecCCHHHHHHhCCCCCEEEEEe
Confidence 47999999988775322 223 5778999999998766543 345 1 1 1233333332222368998742
Q ss_pred ccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205 212 LAGNEEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 212 LVgm~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
.-. +.-..+++.+...+++|.+++--
T Consensus 68 p~~--~~~~~v~~~i~~~l~~g~ivid~ 93 (299)
T PRK12490 68 PAG--EVTESVIKDLYPLLSPGDIVVDG 93 (299)
T ss_pred cCc--hHHHHHHHHHhccCCCCCEEEEC
Confidence 221 24567778888888888766544
No 394
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=92.16 E-value=1.2 Score=42.83 Aligned_cols=95 Identities=16% Similarity=0.215 Sum_probs=61.3
Q ss_pred CCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc--cCCCCc
Q 041205 128 GVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK--EKLGEY 204 (535)
Q Consensus 128 ~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~--~dL~~F 204 (535)
.+.++.+|+-.|+ |++|..++.+|+. .|.+|++++.++ ..+.+ +..| .. .++.....+.. .....+
T Consensus 141 ~~~~~~~vlv~g~~g~~g~~~~~~a~~--~g~~v~~~~~~~-~~~~~----~~~g-~~---~~~~~~~~~~~~~~~~~~~ 209 (309)
T cd05289 141 GLKAGQTVLIHGAAGGVGSFAVQLAKA--RGARVIATASAA-NADFL----RSLG-AD---EVIDYTKGDFERAAAPGGV 209 (309)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHH--cCCEEEEEecch-hHHHH----HHcC-CC---EEEeCCCCchhhccCCCCc
Confidence 3578899999995 8999999999884 688999988766 44444 3455 21 12111111111 122358
Q ss_pred ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
|+|+-. .+ . .......+.++++|.++.-.
T Consensus 210 d~v~~~--~~---~--~~~~~~~~~l~~~g~~v~~g 238 (309)
T cd05289 210 DAVLDT--VG---G--ETLARSLALVKPGGRLVSIA 238 (309)
T ss_pred eEEEEC--Cc---h--HHHHHHHHHHhcCcEEEEEc
Confidence 988853 22 1 16778888999999988653
No 395
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=92.12 E-value=0.23 Score=54.92 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=31.2
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCCh
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDE 167 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDp 167 (535)
...+++|+-||+||.|+++...+.+ .|.+|+.+|..+
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~--~G~~V~v~e~~~ 170 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRR--MGHAVTIFEAGP 170 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCC
Confidence 3678999999999999999988774 578999999543
No 396
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=92.03 E-value=0.66 Score=46.70 Aligned_cols=101 Identities=20% Similarity=0.204 Sum_probs=67.0
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE-ccccc-ccc-CCCC
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLT-CDIME-VKE-KLGE 203 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~-GDA~e-l~~-dL~~ 203 (535)
..+.++.+|+-.|+|++|..++.+|+. .|.+|++++.+++..+.++ ..| ...-+.... .+..+ +.. ..+.
T Consensus 161 ~~~~~~~~vlV~g~g~vg~~~~~~a~~--~G~~vi~~~~~~~~~~~~~----~~g-~~~~i~~~~~~~~~~~~~~~~~~~ 233 (345)
T cd08260 161 ARVKPGEWVAVHGCGGVGLSAVMIASA--LGARVIAVDIDDDKLELAR----ELG-AVATVNASEVEDVAAAVRDLTGGG 233 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCHHHHHHHH----HhC-CCEEEccccchhHHHHHHHHhCCC
Confidence 345788999999999999999999994 5899999999988776664 345 311111111 11111 100 1126
Q ss_pred cceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 204 FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+|+|+-. ++ ....+....+.|+++|.++.-.
T Consensus 234 ~d~vi~~--~g----~~~~~~~~~~~l~~~g~~i~~g 264 (345)
T cd08260 234 AHVSVDA--LG----IPETCRNSVASLRKRGRHVQVG 264 (345)
T ss_pred CCEEEEc--CC----CHHHHHHHHHHhhcCCEEEEeC
Confidence 9988853 32 1346778889999999988754
No 397
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=92.02 E-value=1.3 Score=46.18 Aligned_cols=76 Identities=18% Similarity=0.226 Sum_probs=47.3
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHH--HhhcCCcCCCeEEEE-ccccccccCCCCcce
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRI--VSSDDEIEKRMKFLT-CDIMEVKEKLGEYDC 206 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~l--i~~lG~Ls~rI~Fi~-GDA~el~~dL~~FDv 206 (535)
+.++|..||+|.+|.+....+. ..| ..|+-+|++++.. .|+.+ .......+...++.. +|. .++.+.|+
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la--~~gl~~i~LvDi~~~~~-~~~~ld~~~~~~~~~~~~~I~~~~d~----~~l~~aDi 77 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIV--LKNLGDVVLFDIVKNIP-QGKALDISHSNVIAGSNSKVIGTNNY----EDIAGSDV 77 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHH--hCCCCeEEEEeCCCchh-hHHHHHHHhhhhccCCCeEEEECCCH----HHhCCCCE
Confidence 4579999999999887766544 245 4799999999953 22222 111110112345553 553 24567899
Q ss_pred EEecccc
Q 041205 207 IILAALA 213 (535)
Q Consensus 207 VfiaALV 213 (535)
|++.+.+
T Consensus 78 VI~tag~ 84 (321)
T PTZ00082 78 VIVTAGL 84 (321)
T ss_pred EEECCCC
Confidence 9987654
No 398
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=92.00 E-value=0.8 Score=50.71 Aligned_cols=95 Identities=11% Similarity=0.028 Sum_probs=65.2
Q ss_pred CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc----cCCCCcceEE
Q 041205 133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK----EKLGEYDCII 208 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~----~dL~~FDvVf 208 (535)
.+|+-+|+|+.|.......+ ..|..|+.||.|++.++.+++ .| ...++||+.+.. ...+++|.|+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~--~~g~~vvvId~d~~~~~~~~~----~g-----~~~i~GD~~~~~~L~~a~i~~a~~vi 486 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLL--AAGIPLVVIETSRTRVDELRE----RG-----IRAVLGNAANEEIMQLAHLDCARWLL 486 (558)
T ss_pred CCEEEECCChHHHHHHHHHH--HCCCCEEEEECCHHHHHHHHH----CC-----CeEEEcCCCCHHHHHhcCccccCEEE
Confidence 78999999998877554433 257789999999999888764 35 478899998632 2345789887
Q ss_pred eccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
+...- .+....+-...+.+.|+..++.|..
T Consensus 487 v~~~~---~~~~~~iv~~~~~~~~~~~iiar~~ 516 (558)
T PRK10669 487 LTIPN---GYEAGEIVASAREKRPDIEIIARAH 516 (558)
T ss_pred EEcCC---hHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 75322 1222233334566789989988763
No 399
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=91.99 E-value=0.73 Score=46.62 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=64.3
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc----ccccCC-C
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM----EVKEKL-G 202 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~----el~~dL-~ 202 (535)
..++++||-.|+|++|..++.+|+. .|+ .|+.++.+++..+.+++ .| . + .++..+-. .+.... +
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~--~G~~~v~~~~~~~~~~~~~~~----~g-~-~--~~~~~~~~~~~~~~~~~~~~ 242 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKA--LGPANIIVVDIDEAKLEAAKA----AG-A-D--VVVNGSDPDAAKRIIKAAGG 242 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----hC-C-c--EEecCCCccHHHHHHHHhCC
Confidence 3478999999999999999999994 577 79999999887766643 45 2 1 12111100 011111 2
Q ss_pred CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
++|+|+-.... ...+....+.|+++|+++.-.
T Consensus 243 ~~d~vid~~g~------~~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 243 GVDAVIDFVNN------SATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred CCcEEEECCCC------HHHHHHHHHHhhcCCeEEEEC
Confidence 58998843221 346888899999999998653
No 400
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=91.98 E-value=0.89 Score=44.56 Aligned_cols=90 Identities=14% Similarity=0.129 Sum_probs=56.2
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA 210 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia 210 (535)
.+++||-||.|..++..+...- ..|+.|+-|+-+.. +.-+.+. ..| +++++.++.. ..++.++|+||++
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll--~~ga~VtVvsp~~~--~~l~~l~-~~~----~i~~~~~~~~--~~dl~~~~lVi~a 76 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLL--KAGAQLRVIAEELE--SELTLLA-EQG----GITWLARCFD--ADILEGAFLVIAA 76 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHH--HCCCEEEEEcCCCC--HHHHHHH-HcC----CEEEEeCCCC--HHHhCCcEEEEEC
Confidence 4789999999988877554433 36899999976543 1112222 223 6889888864 3456789999987
Q ss_pred cccCChhhHHHHHHHHHhhcccCeEEE
Q 041205 211 ALAGNEEEKAKILGHIRKYMKEGGVLL 237 (535)
Q Consensus 211 ALVgm~edK~~VL~eL~rvLKPGGvLV 237 (535)
... .++-..+....+.-|+++
T Consensus 77 t~d------~~ln~~i~~~a~~~~ilv 97 (205)
T TIGR01470 77 TDD------EELNRRVAHAARARGVPV 97 (205)
T ss_pred CCC------HHHHHHHHHHHHHcCCEE
Confidence 443 222334444444456665
No 401
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=91.95 E-value=0.52 Score=47.35 Aligned_cols=89 Identities=18% Similarity=0.144 Sum_probs=57.0
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEE--eCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNI--DIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI 207 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGI--DIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV 207 (535)
..+++||-||.|..+..-+...- -.|++|+-| +++++..+++. .| +|+++..+.. +.++.++++|
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll--~~gA~VtVVap~i~~el~~l~~-----~~----~i~~~~r~~~--~~dl~g~~LV 89 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFL--KKGCYVYILSKKFSKEFLDLKK-----YG----NLKLIKGNYD--KEFIKDKHLI 89 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH--hCCCEEEEEcCCCCHHHHHHHh-----CC----CEEEEeCCCC--hHHhCCCcEE
Confidence 46889999999988776554332 257776666 88888765432 33 6888887653 3456789999
Q ss_pred EeccccCChhhHHHHHHHHHhhcccCeEEE
Q 041205 208 ILAALAGNEEEKAKILGHIRKYMKEGGVLL 237 (535)
Q Consensus 208 fiaALVgm~edK~~VL~eL~rvLKPGGvLV 237 (535)
|.+..- ..+=+.++...+.-+.++
T Consensus 90 iaATdD------~~vN~~I~~~a~~~~~lv 113 (223)
T PRK05562 90 VIATDD------EKLNNKIRKHCDRLYKLY 113 (223)
T ss_pred EECCCC------HHHHHHHHHHHHHcCCeE
Confidence 987433 344445555554434333
No 402
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=91.93 E-value=0.84 Score=50.31 Aligned_cols=99 Identities=14% Similarity=0.218 Sum_probs=64.0
Q ss_pred CEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205 133 KKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA 211 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA 211 (535)
.+|.+||.|.+|.+-.. |++ .|.+|+++|++++.++...+.....| . .+. ...+..++...+...|+||+..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~---~G~~V~v~dr~~~~~~~l~~~~~~~g-~--~i~-~~~s~~e~v~~l~~~d~Iil~v 74 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIAS---RGFKISVYNRTYEKTEEFVKKAKEGN-T--RVK-GYHTLEELVNSLKKPRKVILLI 74 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHHhhhhcC-C--cce-ecCCHHHHHhcCCCCCEEEEEe
Confidence 47999999988766322 223 57799999999999876655433334 1 222 2345555544444679888752
Q ss_pred ccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 212 LAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 212 LVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
.-+ ..-..+++.+...|+||-++ ++..
T Consensus 75 ~~~--~~v~~vi~~l~~~L~~g~iI-ID~g 101 (470)
T PTZ00142 75 KAG--EAVDETIDNLLPLLEKGDII-IDGG 101 (470)
T ss_pred CCh--HHHHHHHHHHHhhCCCCCEE-EECC
Confidence 322 34567888999999988665 4443
No 403
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.90 E-value=0.85 Score=46.39 Aligned_cols=91 Identities=18% Similarity=0.275 Sum_probs=55.2
Q ss_pred CEEEEEccCCChhhHHHH-Hhh-cCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205 133 KKVAFVGSGPMPLTSIIL-ASQ-HMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA 210 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~L-Ak~-~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia 210 (535)
++|.+||||-+|.+-..- .+. +.+..+|+++|.+++..+. +.++.| . +. +.|..++. ...|+||++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~---l~~~~g-~----~~-~~~~~e~~---~~aDiIiLa 70 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKN---ASDKYG-I----TI-TTNNNEVA---NSADILILS 70 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHH---HHHhcC-c----EE-eCCcHHHH---hhCCEEEEE
Confidence 589999999887664331 121 1234579999999877544 333345 2 22 23332222 357999996
Q ss_pred cccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205 211 ALAGNEEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 211 ALVgm~edK~~VL~eL~rvLKPGGvLVv 238 (535)
... ..-..+++++...+++|.+++.
T Consensus 71 -vkP--~~~~~vl~~l~~~~~~~~lvIS 95 (272)
T PRK12491 71 -IKP--DLYSSVINQIKDQIKNDVIVVT 95 (272)
T ss_pred -eCh--HHHHHHHHHHHHhhcCCcEEEE
Confidence 432 5667778888887777654443
No 404
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=91.80 E-value=0.29 Score=54.04 Aligned_cols=62 Identities=19% Similarity=0.306 Sum_probs=51.4
Q ss_pred CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc
Q 041205 133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK 198 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~ 198 (535)
--||+||+|+ |+-+++.++. .+-.|++++.--.|.+.||++..+.| ++++|+++.---+++.
T Consensus 68 v~vLdigtGT-GLLSmMAvra--gaD~vtA~EvfkPM~d~arkI~~kng-~SdkI~vInkrStev~ 129 (636)
T KOG1501|consen 68 VFVLDIGTGT-GLLSMMAVRA--GADSVTACEVFKPMVDLARKIMHKNG-MSDKINVINKRSTEVK 129 (636)
T ss_pred EEEEEccCCc-cHHHHHHHHh--cCCeEEeehhhchHHHHHHHHHhcCC-Cccceeeeccccceee
Confidence 4689999996 7777766662 35579999999999999999999999 9999999876655544
No 405
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=91.78 E-value=0.5 Score=47.77 Aligned_cols=109 Identities=16% Similarity=0.231 Sum_probs=72.8
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC-----cCCCeEEEEccccccccCC---
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE-----IEKRMKFLTCDIMEVKEKL--- 201 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~-----Ls~rI~Fi~GDA~el~~dL--- 201 (535)
++.--++||||| .|.-.+-|+. .+|++-|.|.+|-....+.-+..++.++- .-.+|.+...+++......
T Consensus 59 ~~kvefaDIGCG-yGGLlv~Lsp-~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~k 136 (249)
T KOG3115|consen 59 NKKVEFADIGCG-YGGLLMKLAP-KFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEK 136 (249)
T ss_pred cccceEEeeccC-ccchhhhccc-cCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhh
Confidence 345678999999 5555577887 69999999999999998888888776541 1256778888876544322
Q ss_pred CC-cceEEeccccCC--hhhH-----HHHHHHHHhhcccCeEEEEEc
Q 041205 202 GE-YDCIILAALAGN--EEEK-----AKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 202 ~~-FDvVfiaALVgm--~edK-----~~VL~eL~rvLKPGGvLVvRs 240 (535)
+. +-..|+.-.-|. ...| ...+.++.=++++||.+..-+
T Consensus 137 gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 137 GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 11 333333333332 1222 235677778899999887765
No 406
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=91.74 E-value=0.92 Score=44.94 Aligned_cols=99 Identities=13% Similarity=0.110 Sum_probs=65.7
Q ss_pred hCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccc----cccccCC
Q 041205 127 TGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDI----MEVKEKL 201 (535)
Q Consensus 127 ~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA----~el~~dL 201 (535)
..+.++.+||-.| +|++|..++.+|++ .|++|++++.+++..+.+++. .| ...-+.....+. .+.. .
T Consensus 141 ~~~~~~~~vlI~g~~g~ig~~~~~~a~~--~G~~vi~~~~~~~~~~~~~~~---~g-~~~~~~~~~~~~~~~v~~~~-~- 212 (329)
T cd05288 141 GKPKPGETVVVSAAAGAVGSVVGQIAKL--LGARVVGIAGSDEKCRWLVEE---LG-FDAAINYKTPDLAEALKEAA-P- 212 (329)
T ss_pred cCCCCCCEEEEecCcchHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHhh---cC-CceEEecCChhHHHHHHHhc-c-
Confidence 3456789999999 69999999999994 688999999999876665542 34 211111111111 1111 1
Q ss_pred CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
.++|+|+-. +| ...+....+.++++|.++.-.
T Consensus 213 ~~~d~vi~~--~g-----~~~~~~~~~~l~~~G~~v~~g 244 (329)
T cd05288 213 DGIDVYFDN--VG-----GEILDAALTLLNKGGRIALCG 244 (329)
T ss_pred CCceEEEEc--ch-----HHHHHHHHHhcCCCceEEEEe
Confidence 468988842 33 136788889999999988653
No 407
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=91.72 E-value=0.93 Score=45.45 Aligned_cols=95 Identities=22% Similarity=0.252 Sum_probs=60.1
Q ss_pred CCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 131 QLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 131 ~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
++.+|+-.| +|++|..++.+|+. .|++|+++..+ +. +..++..| ...-+.....+..+.......+|+|+-
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~--~G~~v~~~~~~-~~----~~~~~~~g-~~~~~~~~~~~~~~~l~~~~~vd~vi~ 233 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKA--WGAHVTTTCST-DA----IPLVKSLG-ADDVIDYNNEDFEEELTERGKFDVILD 233 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHH--CCCeEEEEeCc-ch----HHHHHHhC-CceEEECCChhHHHHHHhcCCCCEEEE
Confidence 489999999 79999999999984 57888888744 33 33445556 311111111111111112246899985
Q ss_pred ccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
. ++ .. .+..+.+.++++|.++.-.
T Consensus 234 ~--~g---~~--~~~~~~~~l~~~G~~v~~g 257 (350)
T cd08248 234 T--VG---GD--TEKWALKLLKKGGTYVTLV 257 (350)
T ss_pred C--CC---hH--HHHHHHHHhccCCEEEEec
Confidence 3 32 12 6788889999999998753
No 408
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=91.67 E-value=0.82 Score=45.89 Aligned_cols=100 Identities=21% Similarity=0.289 Sum_probs=65.1
Q ss_pred CCCCCCEEEEEccCCChhhHHHHHhhcCCCcE-EEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc--CCCCc
Q 041205 128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTH-FDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE--KLGEY 204 (535)
Q Consensus 128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~-VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~--dL~~F 204 (535)
.+.++.+||-.|+|.+|..++.+|++ .|.. |++++.+++..+..+ ..| ...-+........++.. .-.++
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~--~G~~~v~~~~~~~~~~~~l~----~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 228 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKI--LGAKRVIAVDIDDEKLAVAR----ELG-ADDTINPKEEDVEKVRELTEGRGA 228 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHH----HcC-CCEEecCccccHHHHHHHhCCCCC
Confidence 45788999999999999999999994 5776 999999887766554 345 21111111111111111 11249
Q ss_pred ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
|+|+-. ++ ....+..+.+.|+++|+++.-.
T Consensus 229 d~vld~--~g----~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 229 DLVIEA--AG----SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CEEEEC--CC----CHHHHHHHHHHhhcCCEEEEEc
Confidence 999864 22 1346788889999999988754
No 409
>PRK06545 prephenate dehydrogenase; Validated
Probab=91.64 E-value=0.61 Score=48.98 Aligned_cols=91 Identities=23% Similarity=0.292 Sum_probs=55.2
Q ss_pred CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccc
Q 041205 133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAAL 212 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaAL 212 (535)
++|.+||+|.+|.+-.....+ .|..|..+|.|+...+.+.. ...| ..+. ...|. .......|+||++.-
T Consensus 1 ~~I~iIG~GliG~siA~~L~~--~G~~v~i~~~~~~~~~~~~a--~~~~-~~~~---~~~~~---~~~~~~aDlVilavP 69 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKA--AGPDVFIIGYDPSAAQLARA--LGFG-VIDE---LAADL---QRAAAEADLIVLAVP 69 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHh--cCCCeEEEEeCCCHHHHHHH--hcCC-CCcc---cccCH---HHHhcCCCEEEEeCC
Confidence 479999999988776554442 34466667777665554442 2233 1111 11121 112356899999755
Q ss_pred cCChhhHHHHHHHHHh-hcccCeEEE
Q 041205 213 AGNEEEKAKILGHIRK-YMKEGGVLL 237 (535)
Q Consensus 213 Vgm~edK~~VL~eL~r-vLKPGGvLV 237 (535)
. .....++.++.+ .++||.+|.
T Consensus 70 ~---~~~~~vl~~l~~~~l~~~~ivt 92 (359)
T PRK06545 70 V---DATAALLAELADLELKPGVIVT 92 (359)
T ss_pred H---HHHHHHHHHHhhcCCCCCcEEE
Confidence 5 567888898887 488875443
No 410
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=91.60 E-value=0.68 Score=46.57 Aligned_cols=87 Identities=21% Similarity=0.154 Sum_probs=53.9
Q ss_pred CEEEEEccCCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205 133 KKVAFVGSGPMPLT-SIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA 211 (535)
Q Consensus 133 kRVLeIGSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA 211 (535)
++|.+||+|.+|.+ +..+++ .|.+|+++|.+++.++... ..| . .+ +.+..++ ....|+||+..
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~---~g~~v~~~d~~~~~~~~~~----~~g-~----~~-~~~~~e~---~~~~d~vi~~v 66 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLK---AGYSLVVYDRNPEAVAEVI----AAG-A----ET-ASTAKAV---AEQCDVIITML 66 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHH---CCCeEEEEcCCHHHHHHHH----HCC-C----ee-cCCHHHH---HhcCCEEEEeC
Confidence 58999999998865 334444 6789999999998766543 234 1 11 2232222 24689999864
Q ss_pred ccCChhhHHHHH---HHHHhhcccCeEEE
Q 041205 212 LAGNEEEKAKIL---GHIRKYMKEGGVLL 237 (535)
Q Consensus 212 LVgm~edK~~VL---~eL~rvLKPGGvLV 237 (535)
... ..-..++ +.+...++||.+++
T Consensus 67 p~~--~~~~~v~~~~~~~~~~~~~g~iii 93 (296)
T PRK11559 67 PNS--PHVKEVALGENGIIEGAKPGTVVI 93 (296)
T ss_pred CCH--HHHHHHHcCcchHhhcCCCCcEEE
Confidence 331 1223343 44667788877776
No 411
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=91.57 E-value=0.72 Score=47.28 Aligned_cols=102 Identities=21% Similarity=0.170 Sum_probs=66.2
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcE-EEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-ccc--CCC
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTH-FDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VKE--KLG 202 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~-VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~~--dL~ 202 (535)
..+.++.+||-.|+|++|..++.+|+. .|.. |++++.+++..+.++ ..| ...-+.....+..+ +.. +..
T Consensus 178 ~~~~~g~~vLI~g~g~vG~a~i~lak~--~G~~~Vi~~~~~~~~~~~~~----~~g-~~~vv~~~~~~~~~~l~~~~~~~ 250 (363)
T cd08279 178 ARVRPGDTVAVIGCGGVGLNAIQGARI--AGASRIIAVDPVPEKLELAR----RFG-ATHTVNASEDDAVEAVRDLTDGR 250 (363)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCcEEEEcCCHHHHHHHH----HhC-CeEEeCCCCccHHHHHHHHcCCC
Confidence 456788999999999999999999994 5775 999999988776654 345 21111111111111 111 123
Q ss_pred CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
.+|+|+-... ....+..+.+.|+++|+++.-..
T Consensus 251 ~vd~vld~~~------~~~~~~~~~~~l~~~G~~v~~g~ 283 (363)
T cd08279 251 GADYAFEAVG------RAATIRQALAMTRKGGTAVVVGM 283 (363)
T ss_pred CCCEEEEcCC------ChHHHHHHHHHhhcCCeEEEEec
Confidence 5998875322 13567888999999999987543
No 412
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=91.54 E-value=0.86 Score=44.85 Aligned_cols=100 Identities=17% Similarity=0.184 Sum_probs=66.5
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE-ccccc-cc--cCCC
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLT-CDIME-VK--EKLG 202 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~-GDA~e-l~--~dL~ 202 (535)
..+.++.+|+-.|+|++|..++.+|+. .|++|+.++.+++..+.++.+ | ...-+.... .+..+ +. ....
T Consensus 156 ~~~~~g~~vli~g~g~~g~~~~~~a~~--~G~~v~~~~~~~~~~~~~~~~----g-~~~~~~~~~~~~~~~~~~~~~~~~ 228 (336)
T cd08276 156 GPLKPGDTVLVQGTGGVSLFALQFAKA--AGARVIATSSSDEKLERAKAL----G-ADHVINYRTTPDWGEEVLKLTGGR 228 (336)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHc----C-CCEEEcCCcccCHHHHHHHHcCCC
Confidence 345788999999999999999999994 689999999999888777653 5 211111111 11111 01 1113
Q ss_pred CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
.+|+++-. ++ ...+....+.++++|.++.-.
T Consensus 229 ~~d~~i~~--~~-----~~~~~~~~~~l~~~G~~v~~g 259 (336)
T cd08276 229 GVDHVVEV--GG-----PGTLAQSIKAVAPGGVISLIG 259 (336)
T ss_pred CCcEEEEC--CC-----hHHHHHHHHhhcCCCEEEEEc
Confidence 58998853 22 235777889999999988654
No 413
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=91.52 E-value=0.6 Score=52.59 Aligned_cols=107 Identities=18% Similarity=0.277 Sum_probs=78.2
Q ss_pred CCEEEEEccCCChhh--HHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 132 LKKVAFVGSGPMPLT--SIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 132 pkRVLeIGSGplPlT--AI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
...|+-+|.|-+|+- ++..|+......++.+||-+|.|+-.=.. ....+ .+++|+++.+|-.++..+....|+++.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~-W~~~Vtii~~DMR~w~ap~eq~DI~VS 445 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFEC-WDNRVTIISSDMRKWNAPREQADIIVS 445 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhh-hcCeeEEEeccccccCCchhhccchHH
Confidence 456777788776664 44445533346789999999999866554 33334 558999999999888755456898876
Q ss_pred cccc---CChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 210 AALA---GNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 210 aALV---gm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
. ++ |.-+--.+.|+.+-+.|||+|+-|=+++
T Consensus 446 E-LLGSFGDNELSPECLDG~q~fLkpdgIsIP~sY 479 (649)
T KOG0822|consen 446 E-LLGSFGDNELSPECLDGAQKFLKPDGISIPSSY 479 (649)
T ss_pred H-hhccccCccCCHHHHHHHHhhcCCCceEccchh
Confidence 5 44 3356678999999999999999887764
No 414
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=91.48 E-value=0.25 Score=45.32 Aligned_cols=74 Identities=20% Similarity=0.305 Sum_probs=47.4
Q ss_pred CeEEEEccccccccCC-CCcceEEeccccCC-hh--hHHHHHHHHHhhcccCeEEEEEcccccccccCCCCcc--ccCCc
Q 041205 186 RMKFLTCDIMEVKEKL-GEYDCIILAALAGN-EE--EKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEH--ELFDF 259 (535)
Q Consensus 186 rI~Fi~GDA~el~~dL-~~FDvVfiaALVgm-~e--dK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdp--dl~GF 259 (535)
.+++..||+.+....+ ..||+||+|+.-.- .+ =-.+++..+++.++|||+++.-+..|. |-. ...||
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a~~-------Vr~~L~~aGF 104 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSSAGA-------VRRALQQAGF 104 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--BHH-------HHHHHHHCTE
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeechHH-------HHHHHHHcCC
Confidence 4677899998766655 46999999965421 11 126799999999999999999776551 222 23799
Q ss_pred EEEEEEc
Q 041205 260 KVLSIFH 266 (535)
Q Consensus 260 eil~v~h 266 (535)
++...-.
T Consensus 105 ~v~~~~g 111 (124)
T PF05430_consen 105 EVEKVPG 111 (124)
T ss_dssp EEEEEE-
T ss_pred EEEEcCC
Confidence 9854433
No 415
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=91.43 E-value=0.82 Score=45.84 Aligned_cols=136 Identities=10% Similarity=0.136 Sum_probs=82.7
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc-cccccc------c--
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC-DIMEVK------E-- 199 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G-DA~el~------~-- 199 (535)
+.|+++|||+|+.|+..|-...-+ .-|.+-|.|||+=.- .. . ..++++++ |+.+-. .
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr-~~p~g~v~gVDllh~-----------~p-~-~Ga~~i~~~dvtdp~~~~ki~e~l 132 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQR-VNPNGMVLGVDLLHI-----------EP-P-EGATIIQGNDVTDPETYRKIFEAL 132 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHh-hCCCceEEEEeeeec-----------cC-C-CCcccccccccCCHHHHHHHHHhC
Confidence 478999999999987666544422 358999999998531 12 1 34677777 665411 1
Q ss_pred CCCCcceEEecccc---CC-hhhHHHHHHHH-------HhhcccCeEEEEEcccccccccCCCCcccc-CCcEEEEEEcC
Q 041205 200 KLGEYDCIILAALA---GN-EEEKAKILGHI-------RKYMKEGGVLLVRSAKGARAFLYPVVEHEL-FDFKVLSIFHP 267 (535)
Q Consensus 200 dL~~FDvVfiaALV---gm-~edK~~VL~eL-------~rvLKPGGvLVvRsa~GlR~fLYP~Vdpdl-~GFeil~v~hP 267 (535)
+....|+|+.+-.- |. ..|-.+.++-+ ...++|+|.+++...+|-..-. +..++ .-|+.+..+.|
T Consensus 133 p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~---l~r~l~~~f~~Vk~vKP 209 (232)
T KOG4589|consen 133 PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEAL---LQRRLQAVFTNVKKVKP 209 (232)
T ss_pred CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHH---HHHHHHHHhhhcEeeCC
Confidence 11348999876222 44 45555555555 4567899999998876621100 00022 45777777777
Q ss_pred CC---cceeeeEEEecC
Q 041205 268 TN---DVINSVVLLQLP 281 (535)
Q Consensus 268 ~~---eVINSVVvARK~ 281 (535)
+. +-..++.++++.
T Consensus 210 ~Asr~eS~E~y~v~~~~ 226 (232)
T KOG4589|consen 210 DASRDESAETYLVCLNF 226 (232)
T ss_pred ccccccccceeeeeeec
Confidence 54 333456777654
No 416
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.34 E-value=2.6 Score=43.95 Aligned_cols=104 Identities=22% Similarity=0.233 Sum_probs=62.8
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChh-HHHHHHHHHhhcCCcCCCeEEEE-ccccccccCCCCcceEE
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDET-ANNLARRIVSSDDEIEKRMKFLT-CDIMEVKEKLGEYDCII 208 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpe-AIelAR~li~~lG~Ls~rI~Fi~-GDA~el~~dL~~FDvVf 208 (535)
+..+|.-||+|.+|.|..+.+...--..+++=+|++++ +-..+..+..... +.....+.. +|.. ++.+.|+|+
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~-~~~~~~v~~~~dy~----~~~~adivv 76 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSA-FLKNPKIEADKDYS----VTANSKVVI 76 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhc-cCCCCEEEECCCHH----HhCCCCEEE
Confidence 45799999999999987765542223457999999886 3355555555543 222224443 5542 356789999
Q ss_pred ecccc----CC-h----hh----HHHHHHHHHhhcccCeEEEEEc
Q 041205 209 LAALA----GN-E----EE----KAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 209 iaALV----gm-~----ed----K~~VL~eL~rvLKPGGvLVvRs 240 (535)
+.+.. || . .. ...+...+.++ .|.|++++-+
T Consensus 77 itaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvs 120 (312)
T cd05293 77 VTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVS 120 (312)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEcc
Confidence 86554 33 1 11 23344444554 5667666644
No 417
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=91.34 E-value=1.1 Score=43.19 Aligned_cols=98 Identities=17% Similarity=0.114 Sum_probs=64.9
Q ss_pred hCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc--cccc-ccc--C
Q 041205 127 TGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC--DIME-VKE--K 200 (535)
Q Consensus 127 ~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G--DA~e-l~~--d 200 (535)
..+.++.+||-.| +|++|..++.+|+. .|+.|++++.+++..+.+++ .| . +.+ +... +..+ +.. .
T Consensus 132 ~~~~~g~~vlI~g~~g~~g~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~----~g-~-~~~-~~~~~~~~~~~~~~~~~ 202 (320)
T cd05286 132 YPVKPGDTVLVHAAAGGVGLLLTQWAKA--LGATVIGTVSSEEKAELARA----AG-A-DHV-INYRDEDFVERVREITG 202 (320)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHH--cCCEEEEEcCCHHHHHHHHH----CC-C-CEE-EeCCchhHHHHHHHHcC
Confidence 4567889999999 79999999999994 58999999999887766543 45 2 111 1111 1111 111 1
Q ss_pred CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 201 LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 201 L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
..++|+|+-. ++ . ..+....+.|+++|.++.-.
T Consensus 203 ~~~~d~vl~~--~~---~--~~~~~~~~~l~~~g~~v~~g 235 (320)
T cd05286 203 GRGVDVVYDG--VG---K--DTFEGSLDSLRPRGTLVSFG 235 (320)
T ss_pred CCCeeEEEEC--CC---c--HhHHHHHHhhccCcEEEEEe
Confidence 2359999853 22 1 35667788999999988643
No 418
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=91.30 E-value=0.78 Score=47.01 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=65.3
Q ss_pred CCCCCCEEEEEccCCChhhHHHHHhhcCCCcE-EEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc-ccc--cCCCC
Q 041205 128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTH-FDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM-EVK--EKLGE 203 (535)
Q Consensus 128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~-VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~-el~--~dL~~ 203 (535)
.+.++.+||-.|+|++|..++.+|+. .|.. |++++.+++..+.+++ .| ...-+.....+.. ++. .....
T Consensus 184 ~~~~g~~VlI~g~g~vG~~~~~lak~--~G~~~vi~~~~s~~~~~~~~~----~g-~~~v~~~~~~~~~~~l~~~~~~~~ 256 (367)
T cd08263 184 DVRPGETVAVIGVGGVGSSAIQLAKA--FGASPIIAVDVRDEKLAKAKE----LG-ATHTVNAAKEDAVAAIREITGGRG 256 (367)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----hC-CceEecCCcccHHHHHHHHhCCCC
Confidence 44678999999999999999999994 4677 9999999887776654 34 2111111111111 111 11245
Q ss_pred cceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 204 FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
||+|+-. ++ .. ..+..+.+.|+++|.++.-.
T Consensus 257 ~d~vld~--vg---~~-~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 257 VDVVVEA--LG---KP-ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred CCEEEEe--CC---CH-HHHHHHHHHHhcCCEEEEEc
Confidence 9999843 32 11 36788899999999988754
No 419
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=91.28 E-value=2 Score=45.52 Aligned_cols=98 Identities=16% Similarity=0.126 Sum_probs=62.6
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc----cCCCCcc
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK----EKLGEYD 205 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~----~dL~~FD 205 (535)
...++|+.+|+|.+|.+...... ..|..|+.||.|++.++..++. + ..+.++.||+.+.. .....+|
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~--~~~~~v~vid~~~~~~~~~~~~----~---~~~~~i~gd~~~~~~L~~~~~~~a~ 299 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLE--KEGYSVKLIERDPERAEELAEE----L---PNTLVLHGDGTDQELLEEEGIDEAD 299 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH--hCCCeEEEEECCHHHHHHHHHH----C---CCCeEEECCCCCHHHHHhcCCccCC
Confidence 34689999999988777544433 2578999999999988766553 2 23578899987531 2335689
Q ss_pred eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
.|++...- ....-+...+.+.+.+. .++++.
T Consensus 300 ~vi~~~~~---~~~n~~~~~~~~~~~~~-~ii~~~ 330 (453)
T PRK09496 300 AFIALTND---DEANILSSLLAKRLGAK-KVIALV 330 (453)
T ss_pred EEEECCCC---cHHHHHHHHHHHHhCCC-eEEEEE
Confidence 88864332 22333344445666655 444443
No 420
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=91.20 E-value=1.9 Score=43.31 Aligned_cols=99 Identities=19% Similarity=0.196 Sum_probs=64.7
Q ss_pred CCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc-ccc--cCCCC
Q 041205 128 GVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM-EVK--EKLGE 203 (535)
Q Consensus 128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~-el~--~dL~~ 203 (535)
.+.++.+||-.|+|++|..++.+|+. .|. +|++++.+++..+.+++ +| . .-+.....+.. .+. ....+
T Consensus 164 ~~~~~~~vlI~g~g~vg~~~~~~a~~--~g~~~v~~~~~~~~~~~~~~~----~g-~-~~~~~~~~~~~~~l~~~~~~~~ 235 (344)
T cd08284 164 QVRPGDTVAVIGCGPVGLCAVLSAQV--LGAARVFAVDPVPERLERAAA----LG-A-EPINFEDAEPVERVREATEGRG 235 (344)
T ss_pred CCccCCEEEEECCcHHHHHHHHHHHH--cCCceEEEEcCCHHHHHHHHH----hC-C-eEEecCCcCHHHHHHHHhCCCC
Confidence 34678999999999999999999994 575 89999888877666554 55 2 11111111110 111 11235
Q ss_pred cceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 204 FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+|+|+-... ....+....+.|+++|.++.-.
T Consensus 236 ~dvvid~~~------~~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 236 ADVVLEAVG------GAAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred CCEEEECCC------CHHHHHHHHHhcccCCEEEEEC
Confidence 998876422 1346778888999999988654
No 421
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=91.20 E-value=1.7 Score=42.35 Aligned_cols=100 Identities=17% Similarity=0.195 Sum_probs=58.3
Q ss_pred CCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205 128 GVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC 206 (535)
Q Consensus 128 ~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv 206 (535)
.+.++.+|+-.|+ |++|..++.+|+. .|++|++++-+ +..+ .++..| ...-+.....+..........+|+
T Consensus 140 ~~~~g~~vli~g~~g~~g~~~~~la~~--~g~~v~~~~~~-~~~~----~~~~~g-~~~~~~~~~~~~~~~~~~~~~~d~ 211 (319)
T cd08267 140 KVKPGQRVLINGASGGVGTFAVQIAKA--LGAHVTGVCST-RNAE----LVRSLG-ADEVIDYTTEDFVALTAGGEKYDV 211 (319)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHH--cCCEEEEEeCH-HHHH----HHHHcC-CCEeecCCCCCcchhccCCCCCcE
Confidence 3578999999997 8899999999983 68899999854 4433 344556 311111111111000112245899
Q ss_pred EEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
|+-...- ........+. .++++|.++.-.
T Consensus 212 vi~~~~~----~~~~~~~~~~-~l~~~g~~i~~g 240 (319)
T cd08267 212 IFDAVGN----SPFSLYRASL-ALKPGGRYVSVG 240 (319)
T ss_pred EEECCCc----hHHHHHHhhh-ccCCCCEEEEec
Confidence 9854221 1233333333 399999988754
No 422
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=91.19 E-value=1 Score=44.09 Aligned_cols=86 Identities=24% Similarity=0.351 Sum_probs=53.2
Q ss_pred EEEEEccCCChhhHHHHHh----hcCCCcEEEEEeCChhHHHH----HHHHHhhcCCcCCCeEEE-EccccccccCCCCc
Q 041205 134 KVAFVGSGPMPLTSIILAS----QHMKSTHFDNIDIDETANNL----ARRIVSSDDEIEKRMKFL-TCDIMEVKEKLGEY 204 (535)
Q Consensus 134 RVLeIGSGplPlTAI~LAk----~~l~Ga~VtGIDIDpeAIel----AR~li~~lG~Ls~rI~Fi-~GDA~el~~dL~~F 204 (535)
||.+||.|..-++-.++.- ..+++.+|+=+|+|++.++. +++++++.| . .++|. +.|-. ..+.+.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~-~--~~~v~~ttd~~---eAl~gA 74 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAG-A--DLKVEATTDRR---EALEGA 74 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCT-T--SSEEEEESSHH---HHHTTE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcC-C--CeEEEEeCCHH---HHhCCC
Confidence 6899999986666444422 12567899999999998875 455566667 3 45553 33433 334678
Q ss_pred ceEEeccccCChhhHHHHHHHHH
Q 041205 205 DCIILAALAGNEEEKAKILGHIR 227 (535)
Q Consensus 205 DvVfiaALVgm~edK~~VL~eL~ 227 (535)
|+|+....+| ..+.+.+++=.
T Consensus 75 DfVi~~irvG--g~~~r~~De~I 95 (183)
T PF02056_consen 75 DFVINQIRVG--GLEAREIDEEI 95 (183)
T ss_dssp SEEEE---TT--HHHHHHHHHHT
T ss_pred CEEEEEeeec--chHHHHHHHHH
Confidence 9999998887 34555555443
No 423
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.16 E-value=0.6 Score=51.02 Aligned_cols=72 Identities=10% Similarity=0.027 Sum_probs=51.1
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
.++++|+.+|.|+.|++++.++. ..|+.|++.|..+...+. ++..| +.++.++.. ...+..+|+|+.
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~--~~G~~v~~~D~~~~~~~~----l~~~g-----~~~~~~~~~--~~~l~~~D~VV~ 76 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALT--RFGARPTVCDDDPDALRP----HAERG-----VATVSTSDA--VQQIADYALVVT 76 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHH--HCCCEEEEEcCCHHHHHH----HHhCC-----CEEEcCcch--HhHhhcCCEEEE
Confidence 46789999999999999998766 378999999987664332 33345 455554321 223356899999
Q ss_pred ccccC
Q 041205 210 AALAG 214 (535)
Q Consensus 210 aALVg 214 (535)
+..+.
T Consensus 77 SpGi~ 81 (488)
T PRK03369 77 SPGFR 81 (488)
T ss_pred CCCCC
Confidence 87774
No 424
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=91.16 E-value=0.48 Score=42.58 Aligned_cols=94 Identities=10% Similarity=0.178 Sum_probs=54.9
Q ss_pred EEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC----cCCCeEEEEccccccc-cCCCCcceEEe
Q 041205 135 VAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE----IEKRMKFLTCDIMEVK-EKLGEYDCIIL 209 (535)
Q Consensus 135 VLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~----Ls~rI~Fi~GDA~el~-~dL~~FDvVfi 209 (535)
|+-+|+|++|..--+.-. ..|..|+.++..+ .++. +++.|. ...+..+......... .....||+||+
T Consensus 1 I~I~G~GaiG~~~a~~L~--~~g~~V~l~~r~~-~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv 73 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLA--QAGHDVTLVSRSP-RLEA----IKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIV 73 (151)
T ss_dssp EEEESTSHHHHHHHHHHH--HTTCEEEEEESHH-HHHH----HHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE
T ss_pred CEEECcCHHHHHHHHHHH--HCCCceEEEEccc-cHHh----hhheeEEEEecccceecccccccCcchhccCCCcEEEE
Confidence 678999976655333322 2789999999998 4443 222230 0001111111111111 23357999999
Q ss_pred ccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205 210 AALAGNEEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 210 aALVgm~edK~~VL~eL~rvLKPGGvLVv 238 (535)
. .+. .+-..+++.+.+.+.|++.+++
T Consensus 74 ~-vKa--~~~~~~l~~l~~~~~~~t~iv~ 99 (151)
T PF02558_consen 74 A-VKA--YQLEQALQSLKPYLDPNTTIVS 99 (151)
T ss_dssp --SSG--GGHHHHHHHHCTGEETTEEEEE
T ss_pred E-ecc--cchHHHHHHHhhccCCCcEEEE
Confidence 6 543 4667799999999999965554
No 425
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=91.14 E-value=1.6 Score=42.49 Aligned_cols=99 Identities=14% Similarity=0.223 Sum_probs=65.3
Q ss_pred hCCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-cccCCCCc
Q 041205 127 TGVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VKEKLGEY 204 (535)
Q Consensus 127 ~~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~~dL~~F 204 (535)
..+.++.+||-.|. |++|..++.+|+. .|++|++++.+++..+.++ ..| . +.+-....+..+ +.....++
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~--~g~~v~~~~~~~~~~~~~~----~~g-~-~~~~~~~~~~~~~i~~~~~~~ 209 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKA--LGATVTATTRSPERAALLK----ELG-A-DEVVIDDGAIAEQLRAAPGGF 209 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHH----hcC-C-cEEEecCccHHHHHHHhCCCc
Confidence 34578899999996 8999999999994 6899999999987765553 456 3 222101111111 11112459
Q ss_pred ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
|+|+-. ++ . ..+..+.+.++++|+++.-.
T Consensus 210 d~vl~~--~~---~--~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 210 DKVLEL--VG---T--ATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred eEEEEC--CC---h--HHHHHHHHHhccCCEEEEEc
Confidence 988842 32 1 36788889999999987754
No 426
>PTZ00117 malate dehydrogenase; Provisional
Probab=91.04 E-value=1.3 Score=46.15 Aligned_cols=103 Identities=17% Similarity=0.297 Sum_probs=61.0
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHH-HhhcCC-cCCCeEEEE-ccccccccCCCCcce
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRI-VSSDDE-IEKRMKFLT-CDIMEVKEKLGEYDC 206 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~l-i~~lG~-Ls~rI~Fi~-GDA~el~~dL~~FDv 206 (535)
+..+|.-||+|.+|++...++.. .| +.++=+|++++..+ +..+ ...... .+....+.. +|- ..+.+.|+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~--~~~~~l~L~Di~~~~~~-g~~lDl~~~~~~~~~~~~i~~~~d~----~~l~~ADi 76 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQ--KNLGDVVLYDVIKGVPQ-GKALDLKHFSTLVGSNINILGTNNY----EDIKDSDV 76 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHH--CCCCeEEEEECCCccch-hHHHHHhhhccccCCCeEEEeCCCH----HHhCCCCE
Confidence 46799999999999997665542 34 68999999987644 4333 111110 112344443 332 24467899
Q ss_pred EEeccccCC-h------------hhHHHHHHHHHhhcccCe-EEEEEcc
Q 041205 207 IILAALAGN-E------------EEKAKILGHIRKYMKEGG-VLLVRSA 241 (535)
Q Consensus 207 VfiaALVgm-~------------edK~~VL~eL~rvLKPGG-vLVvRsa 241 (535)
|++.+.++- . +-+.++...+.++ .|.+ ++++-|+
T Consensus 77 VVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivvsNP 124 (319)
T PTZ00117 77 VVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVTNP 124 (319)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCh
Confidence 999876632 1 2244566666665 4666 4444443
No 427
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=90.98 E-value=1.3 Score=42.84 Aligned_cols=100 Identities=19% Similarity=0.195 Sum_probs=64.3
Q ss_pred hCCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc---cCCC
Q 041205 127 TGVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK---EKLG 202 (535)
Q Consensus 127 ~~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~---~dL~ 202 (535)
..+.++.+|+-.|+ |++|..++.+|+. .|++|++++.+++..+.+++ .| ...-+.....+..+.. ....
T Consensus 135 ~~~~~~~~vli~g~~~~~g~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~~i~~~~~~~ 207 (323)
T cd08241 135 ARLQPGETVLVLGAAGGVGLAAVQLAKA--LGARVIAAASSEEKLALARA----LG-ADHVIDYRDPDLRERVKALTGGR 207 (323)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHH--hCCEEEEEeCCHHHHHHHHH----cC-CceeeecCCccHHHHHHHHcCCC
Confidence 44578899999998 8899999889884 68999999999988776643 35 2111111111111100 1113
Q ss_pred CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
.+|+|+-. ++ ...+..+.+.++++|.++.-.
T Consensus 208 ~~d~v~~~--~g-----~~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 208 GVDVVYDP--VG-----GDVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred CcEEEEEC--cc-----HHHHHHHHHhhccCCEEEEEc
Confidence 58988743 22 134566788899999988754
No 428
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=90.94 E-value=0.78 Score=52.22 Aligned_cols=89 Identities=18% Similarity=0.221 Sum_probs=59.1
Q ss_pred CEEEEEccCCChhhHHHHHhhcCCC--cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205 133 KKVAFVGSGPMPLTSIILASQHMKS--THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA 210 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~LAk~~l~G--a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia 210 (535)
++|..||+|.+|.+....... .| .+|+++|.+++.++.++ ..| ... . ...|. .......|+||++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~--~G~~~~V~~~d~~~~~~~~a~----~~g-~~~--~-~~~~~---~~~~~~aDvVila 70 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRE--RGLAREVVAVDRRAKSLELAV----SLG-VID--R-GEEDL---AEAVSGADVIVLA 70 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHh--cCCCCEEEEEECChhHHHHHH----HCC-CCC--c-ccCCH---HHHhcCCCEEEEC
Confidence 689999999988876555442 33 47999999998877654 345 211 0 11121 1223568999996
Q ss_pred cccCChhhHHHHHHHHHhhcccCeEEE
Q 041205 211 ALAGNEEEKAKILGHIRKYMKEGGVLL 237 (535)
Q Consensus 211 ALVgm~edK~~VL~eL~rvLKPGGvLV 237 (535)
.-. .....++..+.+.++++.+|+
T Consensus 71 vp~---~~~~~vl~~l~~~~~~~~ii~ 94 (735)
T PRK14806 71 VPV---LAMEKVLADLKPLLSEHAIVT 94 (735)
T ss_pred CCH---HHHHHHHHHHHHhcCCCcEEE
Confidence 444 456788888888888876554
No 429
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=90.86 E-value=0.94 Score=45.64 Aligned_cols=111 Identities=14% Similarity=0.064 Sum_probs=64.7
Q ss_pred HhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHH---HH-HH--HHHhhcCCcCCCeEEEEccccccc
Q 041205 125 ENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETAN---NL-AR--RIVSSDDEIEKRMKFLTCDIMEVK 198 (535)
Q Consensus 125 ~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAI---el-AR--~li~~lG~Ls~rI~Fi~GDA~el~ 198 (535)
.+.++++++.|.|+=-| +|+-+-.++...-+.+.|.++=-++-.. .. .+ ...+..+ -.+++.+-.+...+.
T Consensus 42 ~FaGlkpg~tVid~~PG-gGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~--~aN~e~~~~~~~A~~ 118 (238)
T COG4798 42 AFAGLKPGATVIDLIPG-GGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV--YANVEVIGKPLVALG 118 (238)
T ss_pred EEeccCCCCEEEEEecC-CccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh--hhhhhhhCCcccccC
Confidence 34578999999999888 5676677888555666888775443311 11 11 1111112 123333333332222
Q ss_pred cCCCCcceEEe--------ccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 199 EKLGEYDCIIL--------AALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 199 ~dL~~FDvVfi--------aALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
..+.-|+++. ...+| ..--.++...+++.|||||++++-+
T Consensus 119 -~pq~~d~~~~~~~yhdmh~k~i~-~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 119 -APQKLDLVPTAQNYHDMHNKNIH-PATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred -CCCcccccccchhhhhhhccccC-cchHHHHHHHHHHhcCCCcEEEEEe
Confidence 2233444443 33333 2455788999999999999999976
No 430
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.85 E-value=0.79 Score=47.02 Aligned_cols=95 Identities=16% Similarity=0.062 Sum_probs=55.7
Q ss_pred CCCCEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhhc----CC-cCCCeEEEEccccccccCCCC
Q 041205 130 AQLKKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSSD----DE-IEKRMKFLTCDIMEVKEKLGE 203 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l----G~-Ls~rI~Fi~GDA~el~~dL~~ 203 (535)
+..++|..||+|++|.+-.. |++ .|..|+.++.+++..+..++.-... |. +..++.. ..|..+ ....
T Consensus 2 ~~~m~I~iIG~G~mG~~ia~~L~~---~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~-~~~~~e---~~~~ 74 (328)
T PRK14618 2 HHGMRVAVLGAGAWGTALAVLAAS---KGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYP-TADPEE---ALAG 74 (328)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEE-eCCHHH---HHcC
Confidence 34679999999998866433 333 5778999999988766555431110 20 1111221 222222 2356
Q ss_pred cceEEeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205 204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 204 FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVv 238 (535)
.|+|++. .. ...++.+.+.++|+..++.
T Consensus 75 aD~Vi~~-v~------~~~~~~v~~~l~~~~~vi~ 102 (328)
T PRK14618 75 ADFAVVA-VP------SKALRETLAGLPRALGYVS 102 (328)
T ss_pred CCEEEEE-Cc------hHHHHHHHHhcCcCCEEEE
Confidence 8999884 43 1135666677888865553
No 431
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.80 E-value=1.8 Score=46.19 Aligned_cols=74 Identities=11% Similarity=0.131 Sum_probs=48.7
Q ss_pred EEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHH-HHHHhhcCCcCCCeEEEEcccccc---ccCCCCcceEEe
Q 041205 134 KVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLA-RRIVSSDDEIEKRMKFLTCDIMEV---KEKLGEYDCIIL 209 (535)
Q Consensus 134 RVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelA-R~li~~lG~Ls~rI~Fi~GDA~el---~~dL~~FDvVfi 209 (535)
+|+.||.|+.|+++..++. ..|..|++.|..+..-... ...+...| +++..+...++ ...+.++|+|+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~--~~G~~V~~~D~~~~~~~~~~~~~l~~~g-----i~~~~g~~~~~~~~~~~~~~~d~vv~ 74 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLK--AQGWEVVVSDRNDSPELLERQQELEQEG-----ITVKLGKPLELESFQPWLDQPDLVVV 74 (459)
T ss_pred eEEEEccCHHHHHHHHHHH--HCCCEEEEECCCCchhhHHHHHHHHHcC-----CEEEECCccchhhhhHHhhcCCEEEE
Confidence 7999999999999877766 3789999999876532211 12233445 56666553221 012456999998
Q ss_pred ccccC
Q 041205 210 AALAG 214 (535)
Q Consensus 210 aALVg 214 (535)
...+.
T Consensus 75 s~gi~ 79 (459)
T PRK02705 75 SPGIP 79 (459)
T ss_pred CCCCC
Confidence 76664
No 432
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=90.78 E-value=0.34 Score=49.77 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=56.7
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc-CCcCCCeEEEEccccccccC-----CCC
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD-DEIEKRMKFLTCDIMEVKEK-----LGE 203 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l-G~Ls~rI~Fi~GDA~el~~d-----L~~ 203 (535)
.+.-++||||.|+--+=.|+= .|..|.+++|-|+|+.+++.|+.++..- + ++..|++....-.+..+. ...
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG--~~eYgwrfvGseid~~sl~sA~~ii~~N~~-l~~~I~lr~qk~~~~if~giig~nE~ 153 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIG--VHEYGWRFVGSEIDSQSLSSAKAIISANPG-LERAIRLRRQKDSDAIFNGIIGKNER 153 (292)
T ss_pred cCceEEEeeccCccccccccc--ceeecceeecCccCHHHHHHHHHHHHcCcc-hhhheeEEeccCccccccccccccce
Confidence 367899999999732222211 2356899999999999999999999887 5 777888865543322221 134
Q ss_pred cceEEeccccC
Q 041205 204 YDCIILAALAG 214 (535)
Q Consensus 204 FDvVfiaALVg 214 (535)
||+++..--.|
T Consensus 154 yd~tlCNPPFh 164 (292)
T COG3129 154 YDATLCNPPFH 164 (292)
T ss_pred eeeEecCCCcc
Confidence 88888764443
No 433
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=90.73 E-value=1.4 Score=44.34 Aligned_cols=93 Identities=15% Similarity=0.263 Sum_probs=54.4
Q ss_pred CCEEEEEccCCChhhHHHH-Hhh-cCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 132 LKKVAFVGSGPMPLTSIIL-ASQ-HMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 132 pkRVLeIGSGplPlTAI~L-Ak~-~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
.++|.+||+|.+|.+-..- .+. .....+|+.+|.+++. .+..+....| . +. ..|..++ ....|+||+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~--~~~~l~~~~g-~----~~-~~~~~e~---~~~aDvVil 71 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNET--RLQELHQKYG-V----KG-THNKKEL---LTDANILFL 71 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHH--HHHHHHHhcC-c----eE-eCCHHHH---HhcCCEEEE
Confidence 4799999999887654332 121 0123678899987532 2233333445 2 22 2333222 245799999
Q ss_pred ccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205 210 AALAGNEEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 210 aALVgm~edK~~VL~eL~rvLKPGGvLVv 238 (535)
+ ... .+-.+++..+...+++|.+|+.
T Consensus 72 a-v~p--~~~~~vl~~l~~~~~~~~liIs 97 (279)
T PRK07679 72 A-MKP--KDVAEALIPFKEYIHNNQLIIS 97 (279)
T ss_pred E-eCH--HHHHHHHHHHHhhcCCCCEEEE
Confidence 6 332 4556777888887888776654
No 434
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=90.63 E-value=0.91 Score=46.97 Aligned_cols=104 Identities=21% Similarity=0.236 Sum_probs=66.9
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-cc--cCCC
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VK--EKLG 202 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~--~dL~ 202 (535)
..+.++++|+-.|+|++|..++.+|+. .|+ +|+++|.+++..+.+++ .| . .-+.....+..+ +. .. .
T Consensus 172 ~~~~~g~~vlI~g~g~vg~~~~~~a~~--~G~~~vi~~~~~~~~~~~~~~----~g-~-~~v~~~~~~~~~~i~~~~~-~ 242 (375)
T cd08282 172 AGVQPGDTVAVFGAGPVGLMAAYSAIL--RGASRVYVVDHVPERLDLAES----IG-A-IPIDFSDGDPVEQILGLEP-G 242 (375)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----cC-C-eEeccCcccHHHHHHHhhC-C
Confidence 345788999999999999999999983 565 79999999888776654 44 1 111111111111 11 11 3
Q ss_pred CcceEEeccccCC-----hhhHHHHHHHHHhhcccCeEEEEE
Q 041205 203 EYDCIILAALAGN-----EEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 203 ~FDvVfiaALVgm-----~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
.+|+|+-...-.. ...+...+..+.+.++++|.++.-
T Consensus 243 ~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 284 (375)
T cd08282 243 GVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIV 284 (375)
T ss_pred CCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEE
Confidence 5898885422210 013445688889999999998653
No 435
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=90.60 E-value=2.3 Score=41.38 Aligned_cols=101 Identities=18% Similarity=0.124 Sum_probs=56.4
Q ss_pred CEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHH-HHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205 133 KKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARR-IVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA 210 (535)
Q Consensus 133 kRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~-li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia 210 (535)
++|..|| +|.+|.+...... ..|.+|+.++.+++..+.... .....+..+-.+.+...+..+ .....|+||++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~--~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~e---a~~~aDvVila 75 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLA--KAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAE---AAKRADVVILA 75 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHH--hCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHH---HHhcCCEEEEE
Confidence 4799997 8988776444322 256789999999987655433 222222001112222222222 23468999996
Q ss_pred cccCChhhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205 211 ALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKG 243 (535)
Q Consensus 211 ALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~G 243 (535)
.-. ..-..++..+...++ + .+++.-..|
T Consensus 76 vp~---~~~~~~l~~l~~~l~-~-~vvI~~~ng 103 (219)
T TIGR01915 76 VPW---DHVLKTLESLRDELS-G-KLVISPVVP 103 (219)
T ss_pred CCH---HHHHHHHHHHHHhcc-C-CEEEEeccC
Confidence 333 345566666666554 3 555555455
No 436
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=90.56 E-value=0.89 Score=49.69 Aligned_cols=76 Identities=17% Similarity=0.264 Sum_probs=53.3
Q ss_pred CEEEEEccCCChhhHHHHH---hh--cCCCcEEEEEeCChhHHHH----HHHHHhhcCCcCCCeEEEEccccccccCCCC
Q 041205 133 KKVAFVGSGPMPLTSIILA---SQ--HMKSTHFDNIDIDETANNL----ARRIVSSDDEIEKRMKFLTCDIMEVKEKLGE 203 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~LA---k~--~l~Ga~VtGIDIDpeAIel----AR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~ 203 (535)
+||..||.|.. +|..++- +. .+++++|+=+|||+++++. +++.+++.| . .++|... ++....+.+
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g-~--~~~v~~T--tdr~eAl~g 74 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENY-P--EIKFVYT--TDPEEAFTD 74 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhC-C--CeEEEEE--CCHHHHhCC
Confidence 58999999975 8755442 21 2568999999999998887 555556666 2 4555432 233445577
Q ss_pred cceEEeccccC
Q 041205 204 YDCIILAALAG 214 (535)
Q Consensus 204 FDvVfiaALVg 214 (535)
.|+||....+|
T Consensus 75 ADfVi~~irvG 85 (437)
T cd05298 75 ADFVFAQIRVG 85 (437)
T ss_pred CCEEEEEeeeC
Confidence 99999998886
No 437
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=90.52 E-value=1.1 Score=37.30 Aligned_cols=88 Identities=16% Similarity=0.163 Sum_probs=54.9
Q ss_pred EEEEEccCCChhhHHHHHhhcCCC---cEEE-EEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 134 KVAFVGSGPMPLTSIILASQHMKS---THFD-NIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 134 RVLeIGSGplPlTAI~LAk~~l~G---a~Vt-GIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
||.+||+|-+|.+-.. .....| .+|. +.+.+++..+... ++.| +.+...+..++. ...|+||+
T Consensus 1 kI~iIG~G~mg~al~~--~l~~~g~~~~~v~~~~~r~~~~~~~~~---~~~~-----~~~~~~~~~~~~---~~advvil 67 (96)
T PF03807_consen 1 KIGIIGAGNMGSALAR--GLLASGIKPHEVIIVSSRSPEKAAELA---KEYG-----VQATADDNEEAA---QEADVVIL 67 (96)
T ss_dssp EEEEESTSHHHHHHHH--HHHHTTS-GGEEEEEEESSHHHHHHHH---HHCT-----TEEESEEHHHHH---HHTSEEEE
T ss_pred CEEEECCCHHHHHHHH--HHHHCCCCceeEEeeccCcHHHHHHHH---Hhhc-----cccccCChHHhh---ccCCEEEE
Confidence 6899999976655332 211245 7888 5599998765443 3444 234333433333 35799999
Q ss_pred ccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205 210 AALAGNEEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 210 aALVgm~edK~~VL~eL~rvLKPGGvLVv 238 (535)
+ ... ..-..++..+ ....+|.+|+-
T Consensus 68 a-v~p--~~~~~v~~~i-~~~~~~~~vis 92 (96)
T PF03807_consen 68 A-VKP--QQLPEVLSEI-PHLLKGKLVIS 92 (96)
T ss_dssp --S-G--GGHHHHHHHH-HHHHTTSEEEE
T ss_pred E-ECH--HHHHHHHHHH-hhccCCCEEEE
Confidence 6 332 5678888888 77888887764
No 438
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=90.39 E-value=2.9 Score=43.63 Aligned_cols=109 Identities=19% Similarity=0.211 Sum_probs=77.5
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCC---CcEEEEEeCChhHHHHHHH-HHhhcCCcCCCeEEEEccccccccCCCC-
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMK---STHFDNIDIDETANNLARR-IVSSDDEIEKRMKFLTCDIMEVKEKLGE- 203 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~---Ga~VtGIDIDpeAIelAR~-li~~lG~Ls~rI~Fi~GDA~el~~dL~~- 203 (535)
+..+....|+|||.---|.+++-. +.+ -.+.+-||+|...+.-.-+ +..... +-.|.=++||-...+..+..
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda-~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~--~l~v~~l~~~~~~~La~~~~~ 152 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDA-LAHRGSLLRYVPIDVSASILRATATAILREYP--GLEVNALCGDYELALAELPRG 152 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHH-hhhcCCcceeeeecccHHHHHHHHHHHHHhCC--CCeEeehhhhHHHHHhcccCC
Confidence 466899999999988888887743 211 2689999999998865444 444432 23577788886543333322
Q ss_pred --cceEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 204 --YDCIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 204 --FDvVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
==++|+-+..|- ..+...+|.++...|+||-.+++--
T Consensus 153 ~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 153 GRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred CeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 335667777774 6788889999999999999888743
No 439
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=90.39 E-value=1.6 Score=47.04 Aligned_cols=72 Identities=19% Similarity=0.149 Sum_probs=46.5
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII 208 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf 208 (535)
.++++|+.||+|++|...+..+.. .|. +|+.++.+++.. ..+....| . .++. ..+......++|+||
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~--~G~~~V~v~~r~~~ra---~~la~~~g-~----~~~~--~~~~~~~l~~aDvVI 247 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAE--KGVRKITVANRTLERA---EELAEEFG-G----EAIP--LDELPEALAEADIVI 247 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHH--CCCCeEEEEeCCHHHH---HHHHHHcC-C----cEee--HHHHHHHhccCCEEE
Confidence 567999999999988877766552 454 899999998653 34444555 1 1211 112223345799999
Q ss_pred ecccc
Q 041205 209 LAALA 213 (535)
Q Consensus 209 iaALV 213 (535)
.+...
T Consensus 248 ~aT~s 252 (423)
T PRK00045 248 SSTGA 252 (423)
T ss_pred ECCCC
Confidence 87543
No 440
>PLN02712 arogenate dehydrogenase
Probab=90.28 E-value=1.1 Score=51.44 Aligned_cols=90 Identities=14% Similarity=0.128 Sum_probs=56.5
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
+..++|..||+|-+|.+-..... ..|.+|+++|.+... + .+...| + .+ ..|..++.. ...|+|++
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~--~~G~~V~~~dr~~~~-~----~A~~~G-v----~~-~~d~~e~~~--~~aDvViL 114 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLI--SQGHTVLAHSRSDHS-L----AARSLG-V----SF-FLDPHDLCE--RHPDVILL 114 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHH--HCCCEEEEEeCCHHH-H----HHHHcC-C----EE-eCCHHHHhh--cCCCEEEE
Confidence 46789999999988776433323 246799999998543 2 233456 2 22 233322211 34799999
Q ss_pred ccccCChhhHHHHHHHHH-hhcccCeEEE
Q 041205 210 AALAGNEEEKAKILGHIR-KYMKEGGVLL 237 (535)
Q Consensus 210 aALVgm~edK~~VL~eL~-rvLKPGGvLV 237 (535)
+.-. ..-..++..+. ..++||.+|+
T Consensus 115 avP~---~~~~~vl~~l~~~~l~~g~iVv 140 (667)
T PLN02712 115 CTSI---ISTENVLKSLPLQRLKRNTLFV 140 (667)
T ss_pred cCCH---HHHHHHHHhhhhhcCCCCeEEE
Confidence 7444 45677777775 5688887443
No 441
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=90.25 E-value=1.1 Score=51.63 Aligned_cols=101 Identities=17% Similarity=0.124 Sum_probs=71.4
Q ss_pred CEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhh-------cCCc--------CCCeEEEEccccc
Q 041205 133 KKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSS-------DDEI--------EKRMKFLTCDIME 196 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~-------lG~L--------s~rI~Fi~GDA~e 196 (535)
++|.-||+|.+|-.--. +|. ..|..|+-+|+|+++++.++..+.+ .|.+ -.+|++. .|.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~--~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~-- 379 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTAT--KAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TDY-- 379 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHH--HcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CCh--
Confidence 68999999998876433 332 2588999999999999998766532 1211 1345543 222
Q ss_pred cccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 197 VKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 197 l~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
..+.+.|+|+=+ .....+-|.++|.++-++++|+.+|...+.
T Consensus 380 --~~~~~adlViEa-v~E~l~~K~~v~~~l~~~~~~~~ilasnTS 421 (699)
T TIGR02440 380 --RGFKDVDIVIEA-VFEDLALKHQMVKDIEQECAAHTIFASNTS 421 (699)
T ss_pred --HHhccCCEEEEe-ccccHHHHHHHHHHHHhhCCCCcEEEeCCC
Confidence 234678999864 333358899999999999999999988663
No 442
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=90.17 E-value=3.1 Score=42.78 Aligned_cols=75 Identities=19% Similarity=0.187 Sum_probs=47.2
Q ss_pred CEEEEEccCCChhhHHHHHhhcCCC--cEEEEEeCChhHH-HHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 133 KKVAFVGSGPMPLTSIILASQHMKS--THFDNIDIDETAN-NLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~LAk~~l~G--a~VtGIDIDpeAI-elAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
++|.-||+|.+|.+....+. ..| .+|+.+|++++.. ..+..+-.........+.+..++.. ++.++|+|++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~--~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~----~l~~aDIVIi 74 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLV--NQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYS----DCKDADIVVI 74 (306)
T ss_pred CEEEEECCCHHHHHHHHHHH--hcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHH----HhCCCCEEEE
Confidence 37999999988888766544 234 4899999988753 3333333322211234455544432 3467999998
Q ss_pred cccc
Q 041205 210 AALA 213 (535)
Q Consensus 210 aALV 213 (535)
.+..
T Consensus 75 tag~ 78 (306)
T cd05291 75 TAGA 78 (306)
T ss_pred ccCC
Confidence 8766
No 443
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=90.13 E-value=0.99 Score=41.94 Aligned_cols=91 Identities=16% Similarity=0.224 Sum_probs=54.8
Q ss_pred CEEEEEccCCChhhHHHHHhhc-CCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205 133 KKVAFVGSGPMPLTSIILASQH-MKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA 211 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~LAk~~-l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA 211 (535)
++|.+||.|.+|.. ||+++ ..|..|+++|++++..+...+ .| +. .+.+..++. ...|+||+.
T Consensus 2 ~~Ig~IGlG~mG~~---~a~~L~~~g~~v~~~d~~~~~~~~~~~----~g-----~~-~~~s~~e~~---~~~dvvi~~- 64 (163)
T PF03446_consen 2 MKIGFIGLGNMGSA---MARNLAKAGYEVTVYDRSPEKAEALAE----AG-----AE-VADSPAEAA---EQADVVILC- 64 (163)
T ss_dssp BEEEEE--SHHHHH---HHHHHHHTTTEEEEEESSHHHHHHHHH----TT-----EE-EESSHHHHH---HHBSEEEE--
T ss_pred CEEEEEchHHHHHH---HHHHHHhcCCeEEeeccchhhhhhhHH----hh-----hh-hhhhhhhHh---hcccceEee-
Confidence 58999999977654 33332 258899999999977654432 24 12 233443333 246999974
Q ss_pred ccCChhhHHHHHHH--HHhhcccCeEEEEEcc
Q 041205 212 LAGNEEEKAKILGH--IRKYMKEGGVLLVRSA 241 (535)
Q Consensus 212 LVgm~edK~~VL~e--L~rvLKPGGvLVvRsa 241 (535)
+.. ...-..++.. +...|++|.+++--+.
T Consensus 65 v~~-~~~v~~v~~~~~i~~~l~~g~iiid~sT 95 (163)
T PF03446_consen 65 VPD-DDAVEAVLFGENILAGLRPGKIIIDMST 95 (163)
T ss_dssp SSS-HHHHHHHHHCTTHGGGS-TTEEEEE-SS
T ss_pred ccc-chhhhhhhhhhHHhhccccceEEEecCC
Confidence 221 1445677887 8889999888876553
No 444
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=90.12 E-value=0.74 Score=48.24 Aligned_cols=92 Identities=20% Similarity=0.264 Sum_probs=59.3
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA 210 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia 210 (535)
.+++|..||+|.+|.+...++. ..|.+|+++|.++.... + . +++ ..+.. .-+...|+|++.
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~--~~G~~V~~~d~~~~~~~---------~-~---~~~-~~~l~---ell~~aDiVil~ 205 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYA--GFGATITAYDAYPNKDL---------D-F---LTY-KDSVK---EAIKDADIISLH 205 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHH--hCCCEEEEEeCChhHhh---------h-h---hhc-cCCHH---HHHhcCCEEEEe
Confidence 5789999999999887555544 36899999999975421 1 0 111 12222 223568999986
Q ss_pred cccCChhhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205 211 ALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKG 243 (535)
Q Consensus 211 ALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~G 243 (535)
.-.. .+-+.-+...+...|+||++| +..+.|
T Consensus 206 lP~t-~~t~~li~~~~l~~mk~gavl-IN~aRG 236 (330)
T PRK12480 206 VPAN-KESYHLFDKAMFDHVKKGAIL-VNAARG 236 (330)
T ss_pred CCCc-HHHHHHHhHHHHhcCCCCcEE-EEcCCc
Confidence 4442 123556677888999998865 444555
No 445
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=90.12 E-value=1.1 Score=48.73 Aligned_cols=76 Identities=24% Similarity=0.391 Sum_probs=53.8
Q ss_pred CEEEEEccCCChhhHHHHHh----h-cCCCcEEEEEeCChhHHHH----HHHHHhhcCCcCCCeEEEEccccccccCCCC
Q 041205 133 KKVAFVGSGPMPLTSIILAS----Q-HMKSTHFDNIDIDETANNL----ARRIVSSDDEIEKRMKFLTCDIMEVKEKLGE 203 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~LAk----~-~l~Ga~VtGIDIDpeAIel----AR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~ 203 (535)
.+|..||.|.. +|.-++-. . -+++.+|+-+|+|+++++. +++++++.| . .++|... ++....+.+
T Consensus 1 ~KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g-~--~~~v~~t--tD~~~Al~g 74 (425)
T cd05197 1 VKIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVG-A--DIKFEKT--MDLEDAIID 74 (425)
T ss_pred CEEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhC-C--CeEEEEe--CCHHHHhCC
Confidence 48999999975 88655421 1 2678999999999988886 666677777 2 4555432 223345567
Q ss_pred cceEEeccccC
Q 041205 204 YDCIILAALAG 214 (535)
Q Consensus 204 FDvVfiaALVg 214 (535)
.|+||....+|
T Consensus 75 ADfVi~~irvG 85 (425)
T cd05197 75 ADFVINQFRVG 85 (425)
T ss_pred CCEEEEeeecC
Confidence 99999998886
No 446
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=90.02 E-value=1.1 Score=44.86 Aligned_cols=104 Identities=13% Similarity=0.070 Sum_probs=59.8
Q ss_pred hCCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc---cccccccCC-
Q 041205 127 TGVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC---DIMEVKEKL- 201 (535)
Q Consensus 127 ~~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G---DA~el~~dL- 201 (535)
..+.++++||-.|. |++|..++.+|++ .|.+|+.+..+++-.+..+..++++| ...-+..... +..+....+
T Consensus 142 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~i~~~~ 218 (341)
T cd08290 142 VKLQPGDWVIQNGANSAVGQAVIQLAKL--LGIKTINVVRDRPDLEELKERLKALG-ADHVLTEEELRSLLATELLKSAP 218 (341)
T ss_pred cccCCCCEEEEccchhHHHHHHHHHHHH--cCCeEEEEEcCCCcchhHHHHHHhcC-CCEEEeCcccccccHHHHHHHHc
Confidence 34578899999985 8999999999994 47777776655522222333344456 2111111111 111111111
Q ss_pred -CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 202 -GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 202 -~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+.+|+|+-. +| . ..+..+.+.++++|.++.-.
T Consensus 219 ~~~~d~vld~--~g---~--~~~~~~~~~l~~~G~~v~~g 251 (341)
T cd08290 219 GGRPKLALNC--VG---G--KSATELARLLSPGGTMVTYG 251 (341)
T ss_pred CCCceEEEEC--cC---c--HhHHHHHHHhCCCCEEEEEe
Confidence 158988843 22 1 13446778899999988754
No 447
>PRK13243 glyoxylate reductase; Reviewed
Probab=90.00 E-value=0.74 Score=48.17 Aligned_cols=94 Identities=17% Similarity=0.157 Sum_probs=60.2
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
-.+++|..||.|.+|......++ ..|.+|+++|.++.... ....| +.+ .+..++ +...|+|++
T Consensus 148 L~gktvgIiG~G~IG~~vA~~l~--~~G~~V~~~d~~~~~~~-----~~~~~-----~~~--~~l~el---l~~aDiV~l 210 (333)
T PRK13243 148 VYGKTIGIIGFGRIGQAVARRAK--GFGMRILYYSRTRKPEA-----EKELG-----AEY--RPLEEL---LRESDFVSL 210 (333)
T ss_pred CCCCEEEEECcCHHHHHHHHHHH--HCCCEEEEECCCCChhh-----HHHcC-----CEe--cCHHHH---HhhCCEEEE
Confidence 35899999999999887666555 35889999999875421 12333 122 233222 356799998
Q ss_pred ccccCChhhHHHHH-HHHHhhcccCeEEEEEcccc
Q 041205 210 AALAGNEEEKAKIL-GHIRKYMKEGGVLLVRSAKG 243 (535)
Q Consensus 210 aALVgm~edK~~VL-~eL~rvLKPGGvLVvRsa~G 243 (535)
..-.. ++-..++ .+....||||++|+- .+.|
T Consensus 211 ~lP~t--~~T~~~i~~~~~~~mk~ga~lIN-~aRg 242 (333)
T PRK13243 211 HVPLT--KETYHMINEERLKLMKPTAILVN-TARG 242 (333)
T ss_pred eCCCC--hHHhhccCHHHHhcCCCCeEEEE-CcCc
Confidence 65442 3334444 577888999887754 3444
No 448
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=89.99 E-value=0.44 Score=45.05 Aligned_cols=96 Identities=18% Similarity=0.169 Sum_probs=59.2
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
-.+++|.-||+|.+|-....+++ ..|++|+++|.+...-. .....+ +++ .+..++. ...|+|++
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~--~fG~~V~~~d~~~~~~~----~~~~~~-----~~~--~~l~ell---~~aDiv~~ 97 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLK--AFGMRVIGYDRSPKPEE----GADEFG-----VEY--VSLDELL---AQADIVSL 97 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHH--HTT-EEEEEESSCHHHH----HHHHTT-----EEE--SSHHHHH---HH-SEEEE
T ss_pred cCCCEEEEEEEcCCcCeEeeeee--cCCceeEEecccCChhh----hccccc-----cee--eehhhhc---chhhhhhh
Confidence 46899999999999988888877 36899999999998765 222333 222 2333332 45799987
Q ss_pred ccccCChhhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205 210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKG 243 (535)
Q Consensus 210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~G 243 (535)
..-..- +.+.-+=++....||||++|| ..+.|
T Consensus 98 ~~plt~-~T~~li~~~~l~~mk~ga~lv-N~aRG 129 (178)
T PF02826_consen 98 HLPLTP-ETRGLINAEFLAKMKPGAVLV-NVARG 129 (178)
T ss_dssp -SSSST-TTTTSBSHHHHHTSTTTEEEE-ESSSG
T ss_pred hhcccc-ccceeeeeeeeeccccceEEE-eccch
Confidence 644310 111122234456899988764 45555
No 449
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=89.99 E-value=2.3 Score=42.51 Aligned_cols=96 Identities=23% Similarity=0.322 Sum_probs=66.1
Q ss_pred CCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205 128 GVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC 206 (535)
Q Consensus 128 ~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv 206 (535)
.+.++.+|+-.|+ |++|..++.+|++ .|.+|++++.+++..+.++++ ...- +..+ .+ ..++. .++.+|+
T Consensus 159 ~~~~~~~vlI~g~~g~~g~~~~~la~~--~g~~vi~~~~~~~~~~~~~~~-~~~~-~~~~-~~----~~~v~-~~~~~d~ 228 (334)
T PRK13771 159 GVKKGETVLVTGAGGGVGIHAIQVAKA--LGAKVIAVTSSESKAKIVSKY-ADYV-IVGS-KF----SEEVK-KIGGADI 228 (334)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHH-HHHh-cCch-hH----HHHHH-hcCCCcE
Confidence 4578899999999 8999999999994 589999999999998888776 2111 1111 11 11111 1235888
Q ss_pred EEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
++-. ++ . ..+..+.+.+++||.++.-.
T Consensus 229 ~ld~--~g---~--~~~~~~~~~l~~~G~~v~~g 255 (334)
T PRK13771 229 VIET--VG---T--PTLEESLRSLNMGGKIIQIG 255 (334)
T ss_pred EEEc--CC---h--HHHHHHHHHHhcCCEEEEEe
Confidence 8842 32 1 24678888999999988754
No 450
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=89.95 E-value=1.8 Score=43.78 Aligned_cols=97 Identities=24% Similarity=0.267 Sum_probs=65.0
Q ss_pred CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc-ccCCCCcce
Q 041205 128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV-KEKLGEYDC 206 (535)
Q Consensus 128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el-~~dL~~FDv 206 (535)
.+.++.+|+-.|+|++|..++.+|+. .|.+|++++.+++..+.+++ .| . +.+ +...+ .+. .....++|+
T Consensus 166 ~~~~g~~vlV~g~g~vG~~~~~~a~~--~G~~v~~~~~~~~~~~~~~~----~g-~-~~v-i~~~~-~~~~~~~~~~~d~ 235 (337)
T cd05283 166 GVGPGKRVGVVGIGGLGHLAVKFAKA--LGAEVTAFSRSPSKKEDALK----LG-A-DEF-IATKD-PEAMKKAAGSLDL 235 (337)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHH----cC-C-cEE-ecCcc-hhhhhhccCCceE
Confidence 35788999999999999999999994 58899999999988777653 34 1 111 11111 000 111246999
Q ss_pred EEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
||-.... ...+..+.+.|+++|.++.-.
T Consensus 236 v~~~~g~------~~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 236 IIDTVSA------SHDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred EEECCCC------cchHHHHHHHhcCCCEEEEEe
Confidence 9853222 124677788999999888754
No 451
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=89.92 E-value=1.5 Score=44.77 Aligned_cols=100 Identities=19% Similarity=0.266 Sum_probs=56.7
Q ss_pred EEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHH-HhhcCC-cCCCeEEEE-ccccccccCCCCcceEEec
Q 041205 135 VAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRI-VSSDDE-IEKRMKFLT-CDIMEVKEKLGEYDCIILA 210 (535)
Q Consensus 135 VLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~l-i~~lG~-Ls~rI~Fi~-GDA~el~~dL~~FDvVfia 210 (535)
|..||+|.+|.+....... .+. +|+-+|+|++.. .+... +...+. .....++.. +|. .++.+.|+|++.
T Consensus 1 I~IIGaG~vG~~ia~~la~--~~l~eV~L~Di~e~~~-~g~~~dl~~~~~~~~~~~~I~~t~d~----~~l~dADiVIit 73 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL--KELGDVVLLDIVEGLP-QGKALDISQAAPILGSDTKVTGTNDY----EDIAGSDVVVIT 73 (300)
T ss_pred CEEECCCHHHHHHHHHHHh--CCCcEEEEEeCCCcHH-HHHHHHHHHhhhhcCCCeEEEEcCCH----HHhCCCCEEEEe
Confidence 4679999988886554331 332 999999998753 33332 111111 112344442 442 234678999986
Q ss_pred cccC------------C-hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 211 ALAG------------N-EEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 211 ALVg------------m-~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
+... . .+-+..++..+.+...++-++++-|+
T Consensus 74 ~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP 117 (300)
T cd01339 74 AGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNP 117 (300)
T ss_pred cCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 5431 1 24466788888886644444455444
No 452
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=89.84 E-value=0.42 Score=53.93 Aligned_cols=76 Identities=20% Similarity=0.266 Sum_probs=49.6
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChh-----------------HHHHHHHHHhhcCCcCCCeEEEEcc
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDET-----------------ANNLARRIVSSDDEIEKRMKFLTCD 193 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpe-----------------AIelAR~li~~lG~Ls~rI~Fi~GD 193 (535)
.+++|+-||+||.|+++...+.+ .|.+|+-+|.++. .++.-.+.+++.| ++|..+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~--~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~G-----v~~~~~~ 398 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLAR--NGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMG-----IEFELNC 398 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCC-----eEEECCC
Confidence 57899999999999999887774 6888999997643 3444445566666 4554332
Q ss_pred cc----ccccCCCCcceEEecccc
Q 041205 194 IM----EVKEKLGEYDCIILAALA 213 (535)
Q Consensus 194 A~----el~~dL~~FDvVfiaALV 213 (535)
.. .+......||.||++...
T Consensus 399 ~v~~~i~~~~~~~~~DavilAtGa 422 (654)
T PRK12769 399 EVGKDISLESLLEDYDAVFVGVGT 422 (654)
T ss_pred EeCCcCCHHHHHhcCCEEEEeCCC
Confidence 11 111112469999986543
No 453
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.73 E-value=0.58 Score=49.90 Aligned_cols=104 Identities=21% Similarity=0.246 Sum_probs=69.5
Q ss_pred HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc-----ccc
Q 041205 121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC-----DIM 195 (535)
Q Consensus 121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G-----DA~ 195 (535)
++......+.+++.|+-+|.|..|++.+.-|+ ....++|+|||++++-.+.|+++ | . .+|+.- .+.
T Consensus 182 GAa~~~Akv~~GstvAVfGLG~VGLav~~Gak-a~GAsrIIgvDiN~~Kf~~ak~f----G-a---Te~iNp~d~~~~i~ 252 (375)
T KOG0022|consen 182 GAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAK-AAGASRIIGVDINPDKFEKAKEF----G-A---TEFINPKDLKKPIQ 252 (375)
T ss_pred hhhhhhcccCCCCEEEEEecchHHHHHHHhHH-hcCcccEEEEecCHHHHHHHHhc----C-c---ceecChhhccccHH
Confidence 33334456789999999999999999999999 45557899999999999998865 4 1 122221 122
Q ss_pred ccccCC--CCcceEEeccccCChhhHHHHHHHHHhhcccC-eEEEEE
Q 041205 196 EVKEKL--GEYDCIILAALAGNEEEKAKILGHIRKYMKEG-GVLLVR 239 (535)
Q Consensus 196 el~~dL--~~FDvVfiaALVgm~edK~~VL~eL~rvLKPG-GvLVvR 239 (535)
++..+. +++|+-|=. .| ...++.+...-.+.| |.-++-
T Consensus 253 evi~EmTdgGvDysfEc--~G----~~~~m~~al~s~h~GwG~sv~i 293 (375)
T KOG0022|consen 253 EVIIEMTDGGVDYSFEC--IG----NVSTMRAALESCHKGWGKSVVI 293 (375)
T ss_pred HHHHHHhcCCceEEEEe--cC----CHHHHHHHHHHhhcCCCeEEEE
Confidence 222222 458877732 12 356677777777887 655443
No 454
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=89.73 E-value=2.5 Score=41.67 Aligned_cols=98 Identities=11% Similarity=0.075 Sum_probs=65.3
Q ss_pred hCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc--c-ccc-ccc--
Q 041205 127 TGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC--D-IME-VKE-- 199 (535)
Q Consensus 127 ~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G--D-A~e-l~~-- 199 (535)
..+.++.+||-.| +|++|..++.+|+. .|+.++.++.+++..+.+++ .| . ...+... | ..+ +..
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~----~g-~--~~~~~~~~~~~~~~~~~~~~ 206 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEK--YGAATIITTSSEEKVDFCKK----LA-A--IILIRYPDEEGFAPKVKKLT 206 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH----cC-C--cEEEecCChhHHHHHHHHHh
Confidence 4557889999999 78999999999984 67888889989887766643 55 2 1112111 1 111 111
Q ss_pred CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
...++|+|+-. . + ...+..+.+.|+++|.++.-.
T Consensus 207 ~~~~~d~~i~~-~-~-----~~~~~~~~~~l~~~g~~i~~~ 240 (334)
T PTZ00354 207 GEKGVNLVLDC-V-G-----GSYLSETAEVLAVDGKWIVYG 240 (334)
T ss_pred CCCCceEEEEC-C-c-----hHHHHHHHHHhccCCeEEEEe
Confidence 12358999853 2 2 246778888999999998743
No 455
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=89.69 E-value=1.7 Score=43.13 Aligned_cols=94 Identities=16% Similarity=0.149 Sum_probs=60.8
Q ss_pred hCCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcc-ccccccCCCCc
Q 041205 127 TGVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD-IMEVKEKLGEY 204 (535)
Q Consensus 127 ~~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GD-A~el~~dL~~F 204 (535)
..+.++.+|+-+|+ |++|..++.+|+. .|++|++++.+ +.++.+| ... .+-..+ ...+......+
T Consensus 158 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~--~G~~v~~~~~~--------~~~~~~g-~~~--~~~~~~~~~~l~~~~~~~ 224 (325)
T cd08264 158 AGLGPGETVVVFGASGNTGIFAVQLAKM--MGAEVIAVSRK--------DWLKEFG-ADE--VVDYDEVEEKVKEITKMA 224 (325)
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHH--cCCeEEEEeHH--------HHHHHhC-CCe--eecchHHHHHHHHHhCCC
Confidence 34678999999997 9999999999994 57889888621 3334456 211 111111 11111111468
Q ss_pred ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
|+|+-. .+ . ..+....+.|+++|.++.-.
T Consensus 225 d~vl~~--~g---~--~~~~~~~~~l~~~g~~v~~g 253 (325)
T cd08264 225 DVVINS--LG---S--SFWDLSLSVLGRGGRLVTFG 253 (325)
T ss_pred CEEEEC--CC---H--HHHHHHHHhhccCCEEEEEe
Confidence 998743 32 2 47888899999999998754
No 456
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=89.68 E-value=2.8 Score=45.60 Aligned_cols=76 Identities=22% Similarity=0.356 Sum_probs=52.5
Q ss_pred CEEEEEccCCChhhHHHHHh-----hcCCCcEEEEEeCC-hhHHHH----HHHHHhhcCCcCCCeEEEEccccccccCCC
Q 041205 133 KKVAFVGSGPMPLTSIILAS-----QHMKSTHFDNIDID-ETANNL----ARRIVSSDDEIEKRMKFLTCDIMEVKEKLG 202 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~LAk-----~~l~Ga~VtGIDID-peAIel----AR~li~~lG~Ls~rI~Fi~GDA~el~~dL~ 202 (535)
.+|..||.|.. +|..++-. ..+++.+|+-+|+| ++.++. +++.+++.| ..++|... .+....+.
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~---~~~~v~~t--~d~~~al~ 74 (419)
T cd05296 1 MKLTIIGGGSS-YTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAG---LPIKVHLT--TDRREALE 74 (419)
T ss_pred CEEEEECCchH-hHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhC---CCeEEEEe--CCHHHHhC
Confidence 48999999975 77655432 12567999999999 788755 666777777 24566533 12233446
Q ss_pred CcceEEeccccC
Q 041205 203 EYDCIILAALAG 214 (535)
Q Consensus 203 ~FDvVfiaALVg 214 (535)
+-|+|++...+|
T Consensus 75 gadfVi~~~~vg 86 (419)
T cd05296 75 GADFVFTQIRVG 86 (419)
T ss_pred CCCEEEEEEeeC
Confidence 679999988885
No 457
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=89.68 E-value=1.2 Score=46.30 Aligned_cols=46 Identities=20% Similarity=0.159 Sum_probs=39.7
Q ss_pred CCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHH
Q 041205 128 GVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARR 175 (535)
Q Consensus 128 ~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~ 175 (535)
.+.++.+|+-.|+ |++|..++.+|+. .|+.++.++.+++..+.+++
T Consensus 190 ~~~~g~~vlV~ga~g~iG~a~~~lak~--~G~~vv~~~~s~~~~~~~~~ 236 (393)
T cd08246 190 TVKPGDNVLIWGASGGLGSMAIQLARA--AGANPVAVVSSEEKAEYCRA 236 (393)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHH--cCCeEEEEeCCHHHHHHHHH
Confidence 4567899999997 9999999999994 68999999999998888776
No 458
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.66 E-value=1.9 Score=44.13 Aligned_cols=102 Identities=21% Similarity=0.271 Sum_probs=60.1
Q ss_pred CEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHH---Hhhc-CC-cCCCeEEEEccccccccCCCCcce
Q 041205 133 KKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRI---VSSD-DE-IEKRMKFLTCDIMEVKEKLGEYDC 206 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~l---i~~l-G~-Ls~rI~Fi~GDA~el~~dL~~FDv 206 (535)
++|..||+|++|.+--. |++ .|..|+-++.+++.++.-++. .... |. +..++.+. .|..+.. .+++|+
T Consensus 1 MkI~IiGaGa~G~ala~~L~~---~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~--~~~~Dl 74 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSS---KKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEVL--SDNATC 74 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHH---CCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHHH--hCCCCE
Confidence 47999999998875433 334 577899999998766544431 1111 10 12233332 2322211 146899
Q ss_pred EEeccccCChhhHHHHHHHHHh-hcccCeEEEEEccccc
Q 041205 207 IILAALAGNEEEKAKILGHIRK-YMKEGGVLLVRSAKGA 244 (535)
Q Consensus 207 VfiaALVgm~edK~~VL~eL~r-vLKPGGvLVvRsa~Gl 244 (535)
||++ ... .+-..+++.+.. .++++..+++- ..|+
T Consensus 75 iiia-vks--~~~~~~l~~l~~~~l~~~~~vv~~-~nGi 109 (326)
T PRK14620 75 IILA-VPT--QQLRTICQQLQDCHLKKNTPILIC-SKGI 109 (326)
T ss_pred EEEE-eCH--HHHHHHHHHHHHhcCCCCCEEEEE-EcCe
Confidence 9985 442 356678888887 88887755542 3454
No 459
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.57 E-value=4.1 Score=38.50 Aligned_cols=104 Identities=16% Similarity=0.175 Sum_probs=61.2
Q ss_pred CCCEEEEEccCCChhhHHHHHhhc-CCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc----------
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQH-MKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE---------- 199 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~-l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~---------- 199 (535)
.+++|+-.|++ |.....+++.+ -.|.+|++++.+++..+...+.....+ ++.++.+|..+...
T Consensus 4 ~~~~vlItGa~--g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~Dl~~~~~~~~~~~~~~~ 77 (238)
T PRK05786 4 KGKKVAIIGVS--EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG----NIHYVVGDVSSTESARNVIEKAAK 77 (238)
T ss_pred CCcEEEEECCC--chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CeEEEECCCCCHHHHHHHHHHHHH
Confidence 46799999985 23333444432 368999999999876654433333222 57888999874211
Q ss_pred CCCCcceEEeccccCC---hhhH--------------HHHHHHHHhhcccCeEEEEEc
Q 041205 200 KLGEYDCIILAALAGN---EEEK--------------AKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 200 dL~~FDvVfiaALVgm---~edK--------------~~VL~eL~rvLKPGGvLVvRs 240 (535)
..+..|.|+..+.... ..+. ..+++.+.+.+++||.+++-+
T Consensus 78 ~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 78 VLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred HhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 1234687776543210 1111 133556666777787776655
No 460
>PRK08324 short chain dehydrogenase; Validated
Probab=89.57 E-value=3.3 Score=47.10 Aligned_cols=104 Identities=18% Similarity=0.204 Sum_probs=65.0
Q ss_pred CCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc----------
Q 041205 131 QLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE---------- 199 (535)
Q Consensus 131 ~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~---------- 199 (535)
.+++||-.|+ |.+|........ ..|++|+.+|++++..+.....+... .++.++.+|+.+...
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~--~~Ga~Vvl~~r~~~~~~~~~~~l~~~----~~v~~v~~Dvtd~~~v~~~~~~~~~ 494 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLA--AEGACVVLADLDEEAAEAAAAELGGP----DRALGVACDVTDEAAVQAAFEEAAL 494 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHH--HCcCEEEEEeCCHHHHHHHHHHHhcc----CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 5689999994 555554333222 25899999999998766554433221 368888899865221
Q ss_pred CCCCcceEEeccccCC---hh----------------hHHHHHHHHHhhccc---CeEEEEEc
Q 041205 200 KLGEYDCIILAALAGN---EE----------------EKAKILGHIRKYMKE---GGVLLVRS 240 (535)
Q Consensus 200 dL~~FDvVfiaALVgm---~e----------------dK~~VL~eL~rvLKP---GGvLVvRs 240 (535)
..+++|+|+..+.... .. ....+++.+.+.|++ ||.|++-+
T Consensus 495 ~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 495 AFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 1346899987655321 00 134567777888877 67676655
No 461
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=89.47 E-value=2.1 Score=37.19 Aligned_cols=87 Identities=17% Similarity=0.210 Sum_probs=53.1
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
..+++||-||.|+.+..-+...- -.|++|+-|..+.+..+ + .+++..-.. ..++.++|+||.
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll--~~gA~v~vis~~~~~~~---------~----~i~~~~~~~---~~~l~~~~lV~~ 66 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLL--EAGAKVTVISPEIEFSE---------G----LIQLIRREF---EEDLDGADLVFA 66 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHC--CCTBEEEEEESSEHHHH---------T----SCEEEESS----GGGCTTESEEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHHH--hCCCEEEEECCchhhhh---------h----HHHHHhhhH---HHHHhhheEEEe
Confidence 35799999999987776665543 46899999998871111 3 456655443 345678999998
Q ss_pred ccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+..- ..+-+.+++..+.-|+++-..
T Consensus 67 at~d------~~~n~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 67 ATDD------PELNEAIYADARARGILVNVV 91 (103)
T ss_dssp -SS-------HHHHHHHHHHHHHTTSEEEET
T ss_pred cCCC------HHHHHHHHHHHhhCCEEEEEC
Confidence 6332 334455555555455555443
No 462
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=89.45 E-value=2.1 Score=42.58 Aligned_cols=97 Identities=11% Similarity=0.100 Sum_probs=64.9
Q ss_pred hCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc---cc--C
Q 041205 127 TGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV---KE--K 200 (535)
Q Consensus 127 ~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el---~~--d 200 (535)
..+.++++|+-+| +|++|..++.+|+. .|.+|++++.+++..+.+++ +| . +. ++..+-.+. .. .
T Consensus 135 ~~~~~~~~vlI~ga~g~ig~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~----~g-~-~~--v~~~~~~~~~~~~~~~~ 204 (329)
T cd08250 135 GEMKSGETVLVTAAAGGTGQFAVQLAKL--AGCHVIGTCSSDEKAEFLKS----LG-C-DR--PINYKTEDLGEVLKKEY 204 (329)
T ss_pred cCCCCCCEEEEEeCccHHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHH----cC-C-ce--EEeCCCccHHHHHHHhc
Confidence 3567899999999 68999999999994 58899999988877665543 45 2 11 111111110 00 1
Q ss_pred CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 201 LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 201 L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
..++|+|+-. +| ...+..+.+.++++|.++.-.
T Consensus 205 ~~~vd~v~~~--~g-----~~~~~~~~~~l~~~g~~v~~g 237 (329)
T cd08250 205 PKGVDVVYES--VG-----GEMFDTCVDNLALKGRLIVIG 237 (329)
T ss_pred CCCCeEEEEC--Cc-----HHHHHHHHHHhccCCeEEEEe
Confidence 1458988853 32 246788889999999988654
No 463
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=89.44 E-value=1.8 Score=43.81 Aligned_cols=93 Identities=9% Similarity=0.097 Sum_probs=53.4
Q ss_pred CEEEEEccCCChhhHHHH-Hhhc-CCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205 133 KKVAFVGSGPMPLTSIIL-ASQH-MKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA 210 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~L-Ak~~-l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia 210 (535)
.+|.+||||.+|.+-..- .+.. .+..+|+.++.+++. ..+.+....+ .+.+ ..|..+. ....|+||++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~--~~~~l~~~~~----~~~~-~~~~~e~---~~~aDvVila 71 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNE--HFNQLYDKYP----TVEL-ADNEAEI---FTKCDHSFIC 71 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHH--HHHHHHHHcC----CeEE-eCCHHHH---HhhCCEEEEe
Confidence 479999999988754332 2210 122579999987642 2233333322 1222 2343222 2468999985
Q ss_pred cccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205 211 ALAGNEEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 211 ALVgm~edK~~VL~eL~rvLKPGGvLVv 238 (535)
.-. ..-..++.++.+.+++|..|+.
T Consensus 72 vpp---~~~~~vl~~l~~~l~~~~~ivS 96 (277)
T PRK06928 72 VPP---LAVLPLLKDCAPVLTPDRHVVS 96 (277)
T ss_pred cCH---HHHHHHHHHHHhhcCCCCEEEE
Confidence 332 3456778888888887765554
No 464
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=89.41 E-value=0.99 Score=46.42 Aligned_cols=89 Identities=13% Similarity=0.061 Sum_probs=55.9
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
-.+++|+.||.|.+|.+....++ ..|++|+.+|.+++..+.+ ...| . ..+. ..++...+.++|+|+.
T Consensus 149 l~gk~v~IiG~G~iG~avA~~L~--~~G~~V~v~~R~~~~~~~~----~~~g-~----~~~~--~~~l~~~l~~aDiVin 215 (287)
T TIGR02853 149 IHGSNVMVLGFGRTGMTIARTFS--ALGARVFVGARSSADLARI----TEMG-L----IPFP--LNKLEEKVAEIDIVIN 215 (287)
T ss_pred CCCCEEEEEcChHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHH----HHCC-C----eeec--HHHHHHHhccCCEEEE
Confidence 35799999999988887777666 3578999999998765443 2334 2 1111 1222333467999998
Q ss_pred ccccCChhhHHHHHHHHHhhcccCeEEE
Q 041205 210 AALAGNEEEKAKILGHIRKYMKEGGVLL 237 (535)
Q Consensus 210 aALVgm~edK~~VL~eL~rvLKPGGvLV 237 (535)
..-.++ +-......|+||++++
T Consensus 216 t~P~~i------i~~~~l~~~k~~aliI 237 (287)
T TIGR02853 216 TIPALV------LTADVLSKLPKHAVII 237 (287)
T ss_pred CCChHH------hCHHHHhcCCCCeEEE
Confidence 643322 1123456788875543
No 465
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=89.37 E-value=0.91 Score=47.28 Aligned_cols=92 Identities=16% Similarity=0.235 Sum_probs=58.9
Q ss_pred CEEEEEccCCChhhHHHHHhhc-CCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205 133 KKVAFVGSGPMPLTSIILASQH-MKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA 211 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~LAk~~-l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA 211 (535)
.+|.|||-|-+|.+ ||+++ -.|..|+..|++++.. .+.+...|. ..... ..+ .-...|+||+.
T Consensus 1 ~kIafIGLG~MG~p---mA~~L~~aG~~v~v~~r~~~ka---~~~~~~~Ga-----~~a~s-~~e---aa~~aDvVitm- 64 (286)
T COG2084 1 MKIAFIGLGIMGSP---MAANLLKAGHEVTVYNRTPEKA---AELLAAAGA-----TVAAS-PAE---AAAEADVVITM- 64 (286)
T ss_pred CeEEEEcCchhhHH---HHHHHHHCCCEEEEEeCChhhh---hHHHHHcCC-----cccCC-HHH---HHHhCCEEEEe-
Confidence 48999999998877 45543 3578999999998873 233334451 11111 111 11457999973
Q ss_pred ccCChhhHHHHH---HHHHhhcccCeEEEEEcc
Q 041205 212 LAGNEEEKAKIL---GHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 212 LVgm~edK~~VL---~eL~rvLKPGGvLVvRsa 241 (535)
+...++-..++ .-+...++||.++|--+.
T Consensus 65 -v~~~~~V~~V~~g~~g~~~~~~~G~i~IDmST 96 (286)
T COG2084 65 -LPDDAAVRAVLFGENGLLEGLKPGAIVIDMST 96 (286)
T ss_pred -cCCHHHHHHHHhCccchhhcCCCCCEEEECCC
Confidence 32225566666 467888999999887663
No 466
>PRK08818 prephenate dehydrogenase; Provisional
Probab=89.36 E-value=1.2 Score=47.78 Aligned_cols=80 Identities=16% Similarity=0.105 Sum_probs=53.7
Q ss_pred CCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 131 QLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 131 ~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
...+|..||. |-+|-+--...+. ..+.+|+|+|.+. .+ . .+. .......|+|++
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~-~~~~~V~g~D~~d------------~~-~--------~~~---~~~v~~aDlVil 57 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRT-RMQLEVIGHDPAD------------PG-S--------LDP---ATLLQRADVLIF 57 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHh-cCCCEEEEEcCCc------------cc-c--------CCH---HHHhcCCCEEEE
Confidence 3569999999 9887764444442 2478999999841 11 0 011 112356899999
Q ss_pred ccccCChhhHHHHHHHHHhh---cccCeEEEEE
Q 041205 210 AALAGNEEEKAKILGHIRKY---MKEGGVLLVR 239 (535)
Q Consensus 210 aALVgm~edK~~VL~eL~rv---LKPGGvLVvR 239 (535)
+.-+ ..-.+++.++.+. |+||.+| ++
T Consensus 58 avPv---~~~~~~l~~l~~~~~~l~~~~iV-tD 86 (370)
T PRK08818 58 SAPI---RHTAALIEEYVALAGGRAAGQLW-LD 86 (370)
T ss_pred eCCH---HHHHHHHHHHhhhhcCCCCCeEE-EE
Confidence 8777 5778899998876 6886655 44
No 467
>PLN02712 arogenate dehydrogenase
Probab=89.35 E-value=26 Score=40.51 Aligned_cols=90 Identities=13% Similarity=0.128 Sum_probs=56.1
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
..+++|.+||.|-+|.+-..... ..|.+|+++|.++.. +. +...| . .+ ..|..++.. ...|+||+
T Consensus 367 ~~~~kIgIIGlG~mG~slA~~L~--~~G~~V~~~dr~~~~-~~----a~~~G-v----~~-~~~~~el~~--~~aDvVIL 431 (667)
T PLN02712 367 GSKLKIAIVGFGNFGQFLAKTMV--KQGHTVLAYSRSDYS-DE----AQKLG-V----SY-FSDADDLCE--EHPEVILL 431 (667)
T ss_pred CCCCEEEEEecCHHHHHHHHHHH--HCcCEEEEEECChHH-HH----HHHcC-C----eE-eCCHHHHHh--cCCCEEEE
Confidence 46799999999988775433322 246789999999643 22 33456 2 22 234333221 24799999
Q ss_pred ccccCChhhHHHHHHHHHh-hcccCeEEE
Q 041205 210 AALAGNEEEKAKILGHIRK-YMKEGGVLL 237 (535)
Q Consensus 210 aALVgm~edK~~VL~eL~r-vLKPGGvLV 237 (535)
+.-. ..-..++.++.. .++||.+|+
T Consensus 432 avP~---~~~~~vi~~l~~~~lk~g~ivv 457 (667)
T PLN02712 432 CTSI---LSTEKVLKSLPFQRLKRSTLFV 457 (667)
T ss_pred CCCh---HHHHHHHHHHHHhcCCCCcEEE
Confidence 7554 455677777764 578876554
No 468
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=89.34 E-value=1.3 Score=44.67 Aligned_cols=98 Identities=20% Similarity=0.207 Sum_probs=63.6
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc--cCCCCcce
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK--EKLGEYDC 206 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~--~dL~~FDv 206 (535)
.++.+||-.|+|++|..++.+|+. .|. +|++++-+++..+.+++ +| ...-+.....+...+. ....++|+
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~--~G~~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~vd~ 234 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKA--AGASLVIASDPNPYRLELAKK----MG-ADVVINPREEDVVEVKSVTDGTGVDV 234 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHH----hC-cceeeCcccccHHHHHHHcCCCCCCE
Confidence 578999999999999999999994 566 78899888877766664 44 2111111111111011 11235999
Q ss_pred EEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
||-...- ......+.+.|+++|.++.-.
T Consensus 235 vld~~g~------~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 235 VLEMSGN------PKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred EEECCCC------HHHHHHHHHHhccCCEEEEEc
Confidence 9864221 345777788999999988653
No 469
>PRK05442 malate dehydrogenase; Provisional
Probab=89.31 E-value=1.7 Score=45.65 Aligned_cols=107 Identities=13% Similarity=0.122 Sum_probs=63.0
Q ss_pred CCCCEEEEEcc-CCChhhHHHHH-hhcCCC----cEEEEEeCChh---HHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205 130 AQLKKVAFVGS-GPMPLTSIILA-SQHMKS----THFDNIDIDET---ANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK 200 (535)
Q Consensus 130 ~~pkRVLeIGS-GplPlTAI~LA-k~~l~G----a~VtGIDIDpe---AIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d 200 (535)
+.|.+|.-||+ |.+|.+..+.. ..-+-+ ..++=+|+++. +-..|..+......+..++.+..+|- .+
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y----~~ 77 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPN----VA 77 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChH----HH
Confidence 56889999998 99999865532 211111 27999999653 45566666554411223455544432 34
Q ss_pred CCCcceEEecccc----CC-h----hhHHHHHHHHH----hhcccCeEEEEEc
Q 041205 201 LGEYDCIILAALA----GN-E----EEKAKILGHIR----KYMKEGGVLLVRS 240 (535)
Q Consensus 201 L~~FDvVfiaALV----gm-~----edK~~VL~eL~----rvLKPGGvLVvRs 240 (535)
+.+.|+|++.+.+ |+ . ..-.++++++. ++-.|.|++++-+
T Consensus 78 ~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 130 (326)
T PRK05442 78 FKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG 130 (326)
T ss_pred hCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 5678999987775 33 1 22234444444 4444678777754
No 470
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=89.14 E-value=2 Score=46.27 Aligned_cols=73 Identities=18% Similarity=0.117 Sum_probs=47.4
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI 207 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV 207 (535)
..++++|+.||+|++|......... .| .+|+.++.+++. +..+.+..|. . .+. ..++.....++|+|
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~--~G~~~V~v~~rs~~r---a~~la~~~g~--~---~i~--~~~l~~~l~~aDvV 244 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLR--KGVGKILIANRTYER---AEDLAKELGG--E---AVK--FEDLEEYLAEADIV 244 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHH--CCCCEEEEEeCCHHH---HHHHHHHcCC--e---Eee--HHHHHHHHhhCCEE
Confidence 3568999999999998877766552 45 789999999864 3444445551 1 111 12223334579999
Q ss_pred Eecccc
Q 041205 208 ILAALA 213 (535)
Q Consensus 208 fiaALV 213 (535)
|.+...
T Consensus 245 i~aT~s 250 (417)
T TIGR01035 245 ISSTGA 250 (417)
T ss_pred EECCCC
Confidence 987443
No 471
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.13 E-value=1.8 Score=45.32 Aligned_cols=106 Identities=12% Similarity=0.141 Sum_probs=62.6
Q ss_pred CCCEEEEEcc-CCChhhHHHHHhhcCCCc-----EEEEEeCChh---HHHHHHHHHhhcCCcCCCeEEEEccccccccCC
Q 041205 131 QLKKVAFVGS-GPMPLTSIILASQHMKST-----HFDNIDIDET---ANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL 201 (535)
Q Consensus 131 ~pkRVLeIGS-GplPlTAI~LAk~~l~Ga-----~VtGIDIDpe---AIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL 201 (535)
+|.+|.-||+ |.+|.|..+..-..---. +++=+|+.+. +-..|..+......+..++.+..+| ..++
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~----~~~~ 76 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDP----NVAF 76 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCc----HHHh
Confidence 4789999999 999998766433111123 7999999543 4556666655442122345554433 2355
Q ss_pred CCcceEEecccc----CC-h----hhHHHHHHHHHhhc---c-cCeEEEEEc
Q 041205 202 GEYDCIILAALA----GN-E----EEKAKILGHIRKYM---K-EGGVLLVRS 240 (535)
Q Consensus 202 ~~FDvVfiaALV----gm-~----edK~~VL~eL~rvL---K-PGGvLVvRs 240 (535)
.+.|+|++.+.. |+ . ..-.+++.++.+.+ . |.|++++-+
T Consensus 77 ~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (322)
T cd01338 77 KDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG 128 (322)
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 779999988776 33 1 12233444444433 3 577777754
No 472
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=89.09 E-value=4.7 Score=43.67 Aligned_cols=122 Identities=17% Similarity=0.148 Sum_probs=83.4
Q ss_pred HHHHHHHH--HhhCCCCCCEEEEEccCCChhhHHHHHhhcCC--CcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc
Q 041205 117 KLEYGALI--ENTGVAQLKKVAFVGSGPMPLTSIILASQHMK--STHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC 192 (535)
Q Consensus 117 rlE~~lL~--~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~--Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G 192 (535)
+.|...+. .++++.++.+|||.=.-|+|-|+-++..-|.. .+.|++=|.|+.++..=+.-..++. +..+.+...
T Consensus 139 rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~--~~~~~v~~~ 216 (375)
T KOG2198|consen 139 RQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP--SPNLLVTNH 216 (375)
T ss_pred hhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC--Ccceeeecc
Confidence 34544433 23467999999999999998888777553322 3589999999999887777776655 245566666
Q ss_pred cccccccCC---------CCcceEEecccc---C-C-----h--------------hhHHHHHHHHHhhcccCeEEEEEc
Q 041205 193 DIMEVKEKL---------GEYDCIILAALA---G-N-----E--------------EEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 193 DA~el~~dL---------~~FDvVfiaALV---g-m-----~--------------edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
|+...+... -.||-|++|.-- | + + .--.++|..-.+.||+||.||+-+
T Consensus 217 ~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 217 DASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred cceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 665443321 139999987421 1 1 0 112467888899999999999866
No 473
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=89.08 E-value=4 Score=40.95 Aligned_cols=96 Identities=14% Similarity=0.177 Sum_probs=62.5
Q ss_pred hCCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc---cc-ccCC
Q 041205 127 TGVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM---EV-KEKL 201 (535)
Q Consensus 127 ~~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~---el-~~dL 201 (535)
..+.++.+||-.|+ |++|..++.+|++ .|++|++++.+. ..+ .++..| . + .+...+-. +. ....
T Consensus 173 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~--~g~~vi~~~~~~-~~~----~~~~~g-~-~--~~~~~~~~~~~~~~~~~~ 241 (350)
T cd08274 173 AGVGAGETVLVTGASGGVGSALVQLAKR--RGAIVIAVAGAA-KEE----AVRALG-A-D--TVILRDAPLLADAKALGG 241 (350)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHh--cCCEEEEEeCch-hhH----HHHhcC-C-e--EEEeCCCccHHHHHhhCC
Confidence 35678999999998 9999999999994 578899988553 333 334556 3 1 22211100 00 1122
Q ss_pred CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
..+|+|+-. ++ . ..+....+.|+++|.++.-.
T Consensus 242 ~~~d~vi~~--~g---~--~~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 242 EPVDVVADV--VG---G--PLFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred CCCcEEEec--CC---H--HHHHHHHHHhccCCEEEEec
Confidence 459998853 22 1 35788899999999988643
No 474
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.00 E-value=1.4 Score=47.70 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=54.2
Q ss_pred CEEEEEccCCChhhHHHH-HhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc---cCCCCcceEE
Q 041205 133 KKVAFVGSGPMPLTSIIL-ASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK---EKLGEYDCII 208 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~L-Ak~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~---~dL~~FDvVf 208 (535)
++||-||||-+|-+.... |+ -.+.+|+..|.+.+.++.+.... + .++++++-|+.+.. .-+.+||+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~--~~d~~V~iAdRs~~~~~~i~~~~---~---~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQ--NGDGEVTIADRSKEKCARIAELI---G---GKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CcEEEECCchhHHHHHHHHHh--CCCceEEEEeCCHHHHHHHHhhc---c---ccceeEEecccChHHHHHHHhcCCEEE
Confidence 689999999999888776 44 23389999999988877665442 2 27889999987643 2346789999
Q ss_pred ecccc
Q 041205 209 LAALA 213 (535)
Q Consensus 209 iaALV 213 (535)
..+.-
T Consensus 74 n~~p~ 78 (389)
T COG1748 74 NAAPP 78 (389)
T ss_pred EeCCc
Confidence 76443
No 475
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=88.97 E-value=1.5 Score=46.49 Aligned_cols=94 Identities=20% Similarity=0.204 Sum_probs=58.0
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
-.+++|.+||+|.+|.+-..-.+ -.|..|+..+.+.... ...+...| + . ..|..++ ....|+|++
T Consensus 15 L~gktIgIIG~GsmG~AlA~~L~--~sG~~Vvv~~r~~~~s---~~~A~~~G-~----~--~~s~~ea---a~~ADVVvL 79 (330)
T PRK05479 15 IKGKKVAIIGYGSQGHAHALNLR--DSGVDVVVGLREGSKS---WKKAEADG-F----E--VLTVAEA---AKWADVIMI 79 (330)
T ss_pred hCCCEEEEEeeHHHHHHHHHHHH--HCCCEEEEEECCchhh---HHHHHHCC-C----e--eCCHHHH---HhcCCEEEE
Confidence 35789999999988876544333 2567888777664322 22233456 2 1 1243332 245799998
Q ss_pred ccccCChhhHHHHH-HHHHhhcccCeEEEEEcccc
Q 041205 210 AALAGNEEEKAKIL-GHIRKYMKEGGVLLVRSAKG 243 (535)
Q Consensus 210 aALVgm~edK~~VL-~eL~rvLKPGGvLVvRsa~G 243 (535)
..-- ..-..++ +++...|+||.+|++ .+|
T Consensus 80 aVPd---~~~~~V~~~~I~~~Lk~g~iL~~--a~G 109 (330)
T PRK05479 80 LLPD---EVQAEVYEEEIEPNLKEGAALAF--AHG 109 (330)
T ss_pred cCCH---HHHHHHHHHHHHhcCCCCCEEEE--CCC
Confidence 5322 2336677 778899999988855 455
No 476
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=88.95 E-value=1.3 Score=44.54 Aligned_cols=98 Identities=17% Similarity=0.247 Sum_probs=64.1
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc---cCCCCcc
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK---EKLGEYD 205 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~---~dL~~FD 205 (535)
.++++|+-.|+|++|..++.+|++ .|. +|++++.+++..+.+++ +| ...-+.....+..+.. ....++|
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~--~G~~~v~~~~~~~~~~~~~~~----lg-~~~~~~~~~~~~~~~~~~~~~~~~~d 234 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKH--VGARHVVITDVNEYRLELARK----MG-ATRAVNVAKEDLRDVMAELGMTEGFD 234 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHH----hC-CcEEecCccccHHHHHHHhcCCCCCC
Confidence 478999999999999999999994 566 68888888877666554 45 2111111111111111 1223589
Q ss_pred eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+||-... ....+..+.+.|+++|.++.-.
T Consensus 235 ~v~d~~g------~~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 235 VGLEMSG------APSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred EEEECCC------CHHHHHHHHHHHhcCCEEEEEe
Confidence 8886322 2456788888999999998864
No 477
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=88.92 E-value=3.5 Score=40.92 Aligned_cols=85 Identities=18% Similarity=0.140 Sum_probs=57.2
Q ss_pred CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc--cc--CCCCcceEE
Q 041205 133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV--KE--KLGEYDCII 208 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el--~~--dL~~FDvVf 208 (535)
++|+-||+|.+|++..-... ..|-.|+.||.|++.++....- ..+ ...++||+++. +. ...++|+|+
T Consensus 1 m~iiIiG~G~vG~~va~~L~--~~g~~Vv~Id~d~~~~~~~~~~--~~~-----~~~v~gd~t~~~~L~~agi~~aD~vv 71 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELS--EEGHNVVLIDRDEERVEEFLAD--ELD-----THVVIGDATDEDVLEEAGIDDADAVV 71 (225)
T ss_pred CEEEEECCcHHHHHHHHHHH--hCCCceEEEEcCHHHHHHHhhh--hcc-----eEEEEecCCCHHHHHhcCCCcCCEEE
Confidence 58999999999988554433 2567999999999997663321 122 46778888752 22 235699999
Q ss_pred eccccCChhhHHHHHHHHHhh
Q 041205 209 LAALAGNEEEKAKILGHIRKY 229 (535)
Q Consensus 209 iaALVgm~edK~~VL~eL~rv 229 (535)
.+... .+-.-++..+...
T Consensus 72 a~t~~---d~~N~i~~~la~~ 89 (225)
T COG0569 72 AATGN---DEVNSVLALLALK 89 (225)
T ss_pred EeeCC---CHHHHHHHHHHHH
Confidence 87655 2445556666554
No 478
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=88.85 E-value=2.1 Score=42.79 Aligned_cols=98 Identities=15% Similarity=0.161 Sum_probs=63.9
Q ss_pred CCCCCEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc---cccccccCCCCc
Q 041205 129 VAQLKKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC---DIMEVKEKLGEY 204 (535)
Q Consensus 129 l~~pkRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G---DA~el~~dL~~F 204 (535)
+.++++||-.|+|++|..++.+|+. .| .+|++++.+++..+..+ ..| ...-+..... ...++. ...++
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~--~g~~~v~~~~~~~~~~~~~~----~~g-~~~~~~~~~~~~~~i~~~~-~~~~~ 236 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRA--LTPATVIAVDRSEEALKLAE----RLG-ADHVLNASDDVVEEVRELT-GGRGA 236 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHH--hCCCcEEEEeCCHHHHHHHH----HhC-CcEEEcCCccHHHHHHHHh-CCCCC
Confidence 4678999999999999999999984 35 89999999887765554 455 3111111100 011111 11359
Q ss_pred ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
|+|+-...- ...+....+.|+++|.++.-.
T Consensus 237 dvvld~~g~------~~~~~~~~~~l~~~g~~i~~g 266 (340)
T cd05284 237 DAVIDFVGS------DETLALAAKLLAKGGRYVIVG 266 (340)
T ss_pred CEEEEcCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 998864221 346788888999999998754
No 479
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=88.74 E-value=2.5 Score=42.11 Aligned_cols=93 Identities=10% Similarity=0.090 Sum_probs=60.8
Q ss_pred CCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE--ccccc-cc-cCCCCcce
Q 041205 132 LKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLT--CDIME-VK-EKLGEYDC 206 (535)
Q Consensus 132 pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~--GDA~e-l~-~dL~~FDv 206 (535)
+.+||-.| +|++|..++.+|+. +.|++|+++..+++..+.++ .+| . +. ++. .+..+ +. ....++|+
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~-~~G~~vi~~~~~~~~~~~l~----~~g-~-~~--~~~~~~~~~~~i~~~~~~~vd~ 219 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQ-LTGLTVIATASRPESQEWVL----ELG-A-HH--VIDHSKPLKAQLEKLGLEAVSY 219 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHH-hCCCEEEEEcCcHHHHHHHH----HcC-C-CE--EEECCCCHHHHHHHhcCCCCCE
Confidence 88999998 58899999999994 23899999988887655554 356 3 11 111 11111 11 11135998
Q ss_pred EEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205 207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
|+- ..- ....+..+.+.|+++|+++.-
T Consensus 220 vl~-~~~-----~~~~~~~~~~~l~~~G~~v~~ 246 (336)
T TIGR02817 220 VFS-LTH-----TDQHFKEIVELLAPQGRFALI 246 (336)
T ss_pred EEE-cCC-----cHHHHHHHHHHhccCCEEEEE
Confidence 884 221 134577888899999999864
No 480
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.70 E-value=2.3 Score=40.23 Aligned_cols=61 Identities=10% Similarity=0.098 Sum_probs=41.9
Q ss_pred CCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc
Q 041205 131 QLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME 196 (535)
Q Consensus 131 ~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e 196 (535)
+++++|-+|+ |.+|........ -.|.+|+.+|.+++..+.+.+.++..| .++.++.+|+.+
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~--~~G~~vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~ 65 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLA--QKGAKLALIDLNQEKLEEAVAECGALG---TEVRGYAANVTD 65 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEEcCCCC
Confidence 4689999997 555554433222 258899999999987766666665555 467788888653
No 481
>PRK07680 late competence protein ComER; Validated
Probab=88.65 E-value=2.1 Score=42.94 Aligned_cols=92 Identities=14% Similarity=0.187 Sum_probs=54.2
Q ss_pred CEEEEEccCCChhhHHHH-Hhh-cCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205 133 KKVAFVGSGPMPLTSIIL-ASQ-HMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA 210 (535)
Q Consensus 133 kRVLeIGSGplPlTAI~L-Ak~-~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia 210 (535)
++|.+||+|.+|.+-..- .+. +.....|+.+|.+++..+.. ....+ .+.+ ..|..++ ....|+||+.
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~---~~~~~----g~~~-~~~~~~~---~~~aDiVila 69 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHI---KERYP----GIHV-AKTIEEV---ISQSDLIFIC 69 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHH---HHHcC----CeEE-ECCHHHH---HHhCCEEEEe
Confidence 379999999887653322 221 01124789999998765433 23321 1333 2333332 2468999986
Q ss_pred cccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205 211 ALAGNEEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 211 ALVgm~edK~~VL~eL~rvLKPGGvLVv 238 (535)
. .. ..-..+++.+...+++|.+++.
T Consensus 70 v-~p--~~~~~vl~~l~~~l~~~~~iis 94 (273)
T PRK07680 70 V-KP--LDIYPLLQKLAPHLTDEHCLVS 94 (273)
T ss_pred c-CH--HHHHHHHHHHHhhcCCCCEEEE
Confidence 3 32 3456788888888888775543
No 482
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=88.62 E-value=0.38 Score=53.50 Aligned_cols=106 Identities=20% Similarity=0.199 Sum_probs=86.0
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc----CCCCc
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE----KLGEY 204 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~----dL~~F 204 (535)
.++-+|||.=|+ .|+=+|..|+ +.+| ..|++-|.|+.+++.-+++++.-+ .++.++-..+|+..+-. ....|
T Consensus 108 ~~~l~vLealsA-tGlrslRya~-El~~v~~v~AnD~~~~aV~~i~~Nv~~N~-v~~ive~~~~DA~~lM~~~~~~~~~F 184 (525)
T KOG1253|consen 108 EKSLRVLEALSA-TGLRSLRYAK-ELPGVRQVVANDLNENAVTSIQRNVELNG-VEDIVEPHHSDANVLMYEHPMVAKFF 184 (525)
T ss_pred cCcchHHHHhhh-hhHHHHHHHH-HhcchhhhcccCCCHHHHHHHHhhhhhcC-chhhcccccchHHHHHHhcccccccc
Confidence 456788887775 5899999999 4555 579999999999999999999888 78889999999864332 22469
Q ss_pred ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEccc
Q 041205 205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAK 242 (535)
Q Consensus 205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~ 242 (535)
|+|=+|-. | -...+|+...+.++.||+|++-..+
T Consensus 185 DvIDLDPy-G---s~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 185 DVIDLDPY-G---SPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred ceEecCCC-C---CccHHHHHHHHHhhcCCEEEEEecc
Confidence 99999844 4 4688999999999999999997654
No 483
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=88.57 E-value=1.2 Score=44.70 Aligned_cols=101 Identities=18% Similarity=0.189 Sum_probs=65.6
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccc-ccccc--CCC
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDI-MEVKE--KLG 202 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA-~el~~--dL~ 202 (535)
..+.++.+|+-.|+|++|..++.+|++ .|. .|++++.+++..+.+++ +| ...-+....-+. .++.. ...
T Consensus 164 ~~~~~g~~vlI~g~g~vg~~~~~lak~--~G~~~v~~~~~~~~~~~~~~~----~g-a~~v~~~~~~~~~~~i~~~~~~~ 236 (345)
T cd08287 164 AGVRPGSTVVVVGDGAVGLCAVLAAKR--LGAERIIAMSRHEDRQALARE----FG-ATDIVAERGEEAVARVRELTGGV 236 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----cC-CceEecCCcccHHHHHHHhcCCC
Confidence 355778999999999999999999994 577 49999999876655554 45 211111111111 11111 123
Q ss_pred CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
++|+|+-. ++ ....+..+.+.++++|.++.-.
T Consensus 237 ~~d~il~~--~g----~~~~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 237 GADAVLEC--VG----TQESMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred CCCEEEEC--CC----CHHHHHHHHHhhccCCEEEEec
Confidence 58988843 32 2457888899999999998754
No 484
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=88.56 E-value=2.3 Score=41.89 Aligned_cols=100 Identities=14% Similarity=0.111 Sum_probs=65.4
Q ss_pred hCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-cc--cCCC
Q 041205 127 TGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VK--EKLG 202 (535)
Q Consensus 127 ~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~--~dL~ 202 (535)
..+.++.+|+-.| +|++|..++.+|+. .|.+|++++.+++..+.+++ .| ...-+.....+..+ +. ....
T Consensus 138 ~~~~~~~~vlI~g~~~~~g~~~~~la~~--~g~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~ 210 (324)
T cd08244 138 ATLTPGDVVLVTAAAGGLGSLLVQLAKA--AGATVVGAAGGPAKTALVRA----LG-ADVAVDYTRPDWPDQVREALGGG 210 (324)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----cC-CCEEEecCCccHHHHHHHHcCCC
Confidence 3457889999999 69999999999994 58999999999988766543 45 21111111111111 11 1113
Q ss_pred CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
++|+|+-. +| .. ......+.|+++|.++.-.
T Consensus 211 ~~d~vl~~--~g---~~--~~~~~~~~l~~~g~~v~~g 241 (324)
T cd08244 211 GVTVVLDG--VG---GA--IGRAALALLAPGGRFLTYG 241 (324)
T ss_pred CceEEEEC--CC---hH--hHHHHHHHhccCcEEEEEe
Confidence 59999853 32 22 3577889999999988754
No 485
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=88.55 E-value=2.7 Score=41.82 Aligned_cols=95 Identities=13% Similarity=0.125 Sum_probs=62.7
Q ss_pred CCEEEEEc-cCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-cc-cCCCCcceE
Q 041205 132 LKKVAFVG-SGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VK-EKLGEYDCI 207 (535)
Q Consensus 132 pkRVLeIG-SGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~-~dL~~FDvV 207 (535)
+.+|+-+| +|++|..++.+|+. .| .+|++++.+++..+.+++ .| ...-+... .+..+ +. ....++|+|
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~--~G~~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~-~~~~~~i~~~~~~~~d~v 221 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQ--LTGLTVIATASRPESIAWVKE----LG-ADHVINHH-QDLAEQLEALGIEPVDYI 221 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHH--cCCcEEEEEcCChhhHHHHHh----cC-CcEEEeCC-ccHHHHHHhhCCCCCCEE
Confidence 89999998 68899999999994 57 999999999888766643 55 21111111 01111 11 111358988
Q ss_pred EeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+-. ++ ....+..+.+.++++|.++.-.
T Consensus 222 l~~--~~----~~~~~~~~~~~l~~~g~~v~~g 248 (336)
T cd08252 222 FCL--TD----TDQHWDAMAELIAPQGHICLIV 248 (336)
T ss_pred EEc--cC----cHHHHHHHHHHhcCCCEEEEec
Confidence 743 32 1357888899999999998753
No 486
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=88.50 E-value=2 Score=42.78 Aligned_cols=97 Identities=8% Similarity=0.041 Sum_probs=64.2
Q ss_pred hCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc------c
Q 041205 127 TGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK------E 199 (535)
Q Consensus 127 ~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~------~ 199 (535)
..+.++.+|+-.| +|++|..++.+|++ .|++|++++.+++..+.++ ..| .. .++..+-.+.. .
T Consensus 136 ~~~~~g~~vlI~g~~g~ig~~~~~lak~--~G~~v~~~~~~~~~~~~~~----~~g-~~---~~~~~~~~~~~~~~~~~~ 205 (327)
T PRK10754 136 YEIKPDEQFLFHAAAGGVGLIACQWAKA--LGAKLIGTVGSAQKAQRAK----KAG-AW---QVINYREENIVERVKEIT 205 (327)
T ss_pred cCCCCCCEEEEEeCCcHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHH----HCC-CC---EEEcCCCCcHHHHHHHHc
Confidence 3457889999985 78899999999994 6899999999988766654 355 21 12211111110 1
Q ss_pred CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
....+|+|+- + ++ . ..+....+.++++|.++.-.
T Consensus 206 ~~~~~d~vl~-~-~~----~-~~~~~~~~~l~~~g~~v~~g 239 (327)
T PRK10754 206 GGKKVRVVYD-S-VG----K-DTWEASLDCLQRRGLMVSFG 239 (327)
T ss_pred CCCCeEEEEE-C-Cc----H-HHHHHHHHHhccCCEEEEEc
Confidence 1135897773 2 32 1 35677888999999998754
No 487
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=88.46 E-value=2.4 Score=46.36 Aligned_cols=101 Identities=22% Similarity=0.355 Sum_probs=69.2
Q ss_pred CEEEEEccCCChh-hHHHHHhhcCCCcEEEEEeCChhHHHHHHH------------HHhhcCCcCCCeEEEEcccccccc
Q 041205 133 KKVAFVGSGPMPL-TSIILASQHMKSTHFDNIDIDETANNLARR------------IVSSDDEIEKRMKFLTCDIMEVKE 199 (535)
Q Consensus 133 kRVLeIGSGplPl-TAI~LAk~~l~Ga~VtGIDIDpeAIelAR~------------li~~lG~Ls~rI~Fi~GDA~el~~ 199 (535)
|||.-||+|=.|+ ++.|||+ -|-.|+|+|+|+.-++.=++ ++++.. ...|++|- .|.. .
T Consensus 1 MkI~viGtGYVGLv~g~~lA~---~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~-~~gRl~fT-td~~---~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAE---LGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENL-ASGRLRFT-TDYE---E 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHH---cCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcc-ccCcEEEE-cCHH---H
Confidence 6899999998887 4678888 57899999999999887553 222222 23456663 3332 2
Q ss_pred CCCCcceEEecccc-----CC--hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 200 KLGEYDCIILAALA-----GN--EEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 200 dL~~FDvVfiaALV-----gm--~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
.....|++|++-.- |. ..--+.+.+.+..+++...++++.+.
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KST 121 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKST 121 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCC
Confidence 23467999986332 11 23446778888888888899999883
No 488
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=88.31 E-value=2.4 Score=42.54 Aligned_cols=100 Identities=16% Similarity=0.232 Sum_probs=62.1
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCC--hhHHHHHHHHHhhcCCcCCCeEEEEccccccc---cCC
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDID--ETANNLARRIVSSDDEIEKRMKFLTCDIMEVK---EKL 201 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDID--peAIelAR~li~~lG~Ls~rI~Fi~GDA~el~---~dL 201 (535)
..+.++.+||--|+|.+|..++.+|+. .|.+|+.+..+ ++..+. +..+| . +.+.....|..+.. ...
T Consensus 160 ~~~~~g~~vlI~g~g~~g~~~~~la~~--~G~~v~~~~~~~~~~~~~~----~~~~g-~-~~~~~~~~~~~~~l~~~~~~ 231 (306)
T cd08258 160 SGIRPGDTVVVFGPGPIGLLAAQVAKL--QGATVVVVGTEKDEVRLDV----AKELG-A-DAVNGGEEDLAELVNEITDG 231 (306)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCEEEEECCCCCHHHHHH----HHHhC-C-cccCCCcCCHHHHHHHHcCC
Confidence 345788999999999999999999994 57888776443 334433 33445 3 11111122221111 112
Q ss_pred CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
.++|+|+-. ++ ....+....+.|+++|.++.-.
T Consensus 232 ~~vd~vld~--~g----~~~~~~~~~~~l~~~G~~v~~g 264 (306)
T cd08258 232 DGADVVIEC--SG----AVPALEQALELLRKGGRIVQVG 264 (306)
T ss_pred CCCCEEEEC--CC----ChHHHHHHHHHhhcCCEEEEEc
Confidence 358998754 22 2457888889999999998654
No 489
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=88.25 E-value=2.1 Score=42.38 Aligned_cols=95 Identities=13% Similarity=0.137 Sum_probs=62.5
Q ss_pred CCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcc--cccccc-CCCCcce
Q 041205 131 QLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD--IMEVKE-KLGEYDC 206 (535)
Q Consensus 131 ~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GD--A~el~~-dL~~FDv 206 (535)
.+.+||-+|+ |++|..++.+|++ .|.+|++++.+++..+.+++ .| . +.+ +-..+ ...+.. ....+|+
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~----~g-~-~~v-~~~~~~~~~~~~~~~~~~~d~ 216 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAK--LGYEVVASTGKADAADYLKK----LG-A-KEV-IPREELQEESIKPLEKQRWAG 216 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHH--CCCeEEEEecCHHHHHHHHH----cC-C-CEE-EcchhHHHHHHHhhccCCcCE
Confidence 4679999998 9999999999994 57899999999887666643 45 2 111 10111 000100 1135898
Q ss_pred EEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205 207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA 241 (535)
Q Consensus 207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa 241 (535)
|+-. +| . ..+....+.|+++|+++.-..
T Consensus 217 vld~--~g---~--~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 217 AVDP--VG---G--KTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred EEEC--Cc---H--HHHHHHHHHhhcCCEEEEEee
Confidence 8732 32 2 357788899999999988653
No 490
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=88.24 E-value=0.96 Score=42.21 Aligned_cols=90 Identities=21% Similarity=0.225 Sum_probs=51.4
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC-CCCcceEE
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK-LGEYDCII 208 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d-L~~FDvVf 208 (535)
....||.|||-|--+-.|..|++ .|..|+++|+++. .+. .| +.|+.-|+.+-... ..+.|+||
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~---~G~dV~~tDi~~~-------~a~-~g-----~~~v~DDif~P~l~iY~~a~lIY 75 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKE---RGFDVIATDINPR-------KAP-EG-----VNFVVDDIFNPNLEIYEGADLIY 75 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHH---HS-EEEEE-SS-S------------S-----TTEE---SSS--HHHHTTEEEEE
T ss_pred CCCCcEEEECcCCCHHHHHHHHH---cCCcEEEEECccc-------ccc-cC-----cceeeecccCCCHHHhcCCcEEE
Confidence 44569999999999999999988 5799999999998 122 44 57888888752212 14678888
Q ss_pred eccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
.--.- ++-...+-.+++ +-|+-++++.
T Consensus 76 SiRPP---~El~~~il~lA~--~v~adlii~p 102 (127)
T PF03686_consen 76 SIRPP---PELQPPILELAK--KVGADLIIRP 102 (127)
T ss_dssp EES-----TTSHHHHHHHHH--HHT-EEEEE-
T ss_pred EeCCC---hHHhHHHHHHHH--HhCCCEEEEC
Confidence 64332 455666666666 3466677765
No 491
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=88.18 E-value=0.61 Score=52.63 Aligned_cols=76 Identities=20% Similarity=0.313 Sum_probs=49.6
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChh-----------------HHHHHHHHHhhcCCcCCCeEEEEcc
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDET-----------------ANNLARRIVSSDDEIEKRMKFLTCD 193 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpe-----------------AIelAR~li~~lG~Ls~rI~Fi~GD 193 (535)
.+++|+-||+||.|+++...+.+ .|.+|+-+|..+. .++.-.+.+...| |+|+.+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~--~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~G-----v~~~~~~ 381 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILAR--AGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMG-----IDFHLNC 381 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--cCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCC-----eEEEcCC
Confidence 47999999999999999887763 5788999987653 3444445566666 4454332
Q ss_pred cc--c--cccCCCCcceEEecccc
Q 041205 194 IM--E--VKEKLGEYDCIILAALA 213 (535)
Q Consensus 194 A~--e--l~~dL~~FDvVfiaALV 213 (535)
.. + +......||.||++...
T Consensus 382 ~v~~~~~~~~l~~~~DaV~latGa 405 (639)
T PRK12809 382 EIGRDITFSDLTSEYDAVFIGVGT 405 (639)
T ss_pred ccCCcCCHHHHHhcCCEEEEeCCC
Confidence 11 1 11112469999987544
No 492
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=88.16 E-value=3.9 Score=43.53 Aligned_cols=77 Identities=16% Similarity=0.296 Sum_probs=51.7
Q ss_pred CCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 131 QLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 131 ~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
..++|..|| .|-+|.+--.... ..|..|+++|.++. . +..+. ..+.|+||+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~--~~G~~V~~~d~~~~------------~-----------~~~~~---~~~aDlVil 148 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLT--LSGYQVRILEQDDW------------D-----------RAEDI---LADAGMVIV 148 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHH--HCCCeEEEeCCCcc------------h-----------hHHHH---HhcCCEEEE
Confidence 348999999 8988877544333 25778999998641 0 11111 235799999
Q ss_pred ccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+.-+ .....++..+.. ++||.+| ++.
T Consensus 149 avP~---~~~~~~~~~l~~-l~~~~iv-~Dv 174 (374)
T PRK11199 149 SVPI---HLTEEVIARLPP-LPEDCIL-VDL 174 (374)
T ss_pred eCcH---HHHHHHHHHHhC-CCCCcEE-EEC
Confidence 8666 467888888888 7776654 544
No 493
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=88.00 E-value=2.1 Score=43.43 Aligned_cols=100 Identities=20% Similarity=0.210 Sum_probs=63.6
Q ss_pred hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc-cccc--CCC
Q 041205 127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM-EVKE--KLG 202 (535)
Q Consensus 127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~-el~~--dL~ 202 (535)
..+.++++|+-.|+|.+|..++.+|+. .|+ .|+++|.+++..+.+. ..| ...-+.....+.. ++.. .-.
T Consensus 170 ~~~~~g~~vlI~g~g~vG~~~~~~a~~--~G~~~v~~~~~~~~~~~~~~----~~g-~~~v~~~~~~~~~~~~~~~~~~~ 242 (350)
T cd08256 170 ANIKFDDVVVLAGAGPLGLGMIGAARL--KNPKKLIVLDLKDERLALAR----KFG-ADVVLNPPEVDVVEKIKELTGGY 242 (350)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCHHHHHHHH----HcC-CcEEecCCCcCHHHHHHHHhCCC
Confidence 456788999999999999999999994 454 5889999987765554 445 2110111111111 1111 112
Q ss_pred CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205 203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
++|+|+-. ++ . ...+....+.++++|.++.-
T Consensus 243 ~vdvvld~--~g---~-~~~~~~~~~~l~~~G~~v~~ 273 (350)
T cd08256 243 GCDIYIEA--TG---H-PSAVEQGLNMIRKLGRFVEF 273 (350)
T ss_pred CCCEEEEC--CC---C-hHHHHHHHHHhhcCCEEEEE
Confidence 48988753 32 1 23577788899999998874
No 494
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=87.93 E-value=1.9 Score=47.96 Aligned_cols=99 Identities=12% Similarity=0.178 Sum_probs=62.8
Q ss_pred CCEEEEEccCCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205 132 LKKVAFVGSGPMPLT-SIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA 210 (535)
Q Consensus 132 pkRVLeIGSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia 210 (535)
-.+|-+||.|.||.. +..|++ .|..|+..|++++.++.-.+.....| . ..+ ....+..++...+...|+||+.
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~---~G~~V~V~NRt~~k~~~l~~~~~~~G-a-~~~-~~a~s~~e~v~~l~~~dvIi~~ 79 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAE---KGFPISVYNRTTSKVDETVERAKKEG-N-LPL-YGFKDPEDFVLSIQKPRSVIIL 79 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHh---CCCeEEEECCCHHHHHHHHHhhhhcC-C-ccc-ccCCCHHHHHhcCCCCCEEEEE
Confidence 357999999988755 233333 58899999999988765443222224 1 111 1234455555555568999974
Q ss_pred cccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205 211 ALAGNEEEKAKILGHIRKYMKEGGVLLV 238 (535)
Q Consensus 211 ALVgm~edK~~VL~eL~rvLKPGGvLVv 238 (535)
-.-+ +.-..+++.+...|+||.++|-
T Consensus 80 v~~~--~aV~~Vi~gl~~~l~~G~iiID 105 (493)
T PLN02350 80 VKAG--APVDQTIKALSEYMEPGDCIID 105 (493)
T ss_pred CCCc--HHHHHHHHHHHhhcCCCCEEEE
Confidence 2222 4456677888889999876653
No 495
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=87.86 E-value=2.2 Score=39.57 Aligned_cols=97 Identities=21% Similarity=0.292 Sum_probs=61.0
Q ss_pred EEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHh---hcCC--cCCCeEEEEccccccccCCCCcceEE
Q 041205 134 KVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVS---SDDE--IEKRMKFLTCDIMEVKEKLGEYDCII 208 (535)
Q Consensus 134 RVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~---~lG~--Ls~rI~Fi~GDA~el~~dL~~FDvVf 208 (535)
+|.-||+|.+|.+.-.+.. ..|-+|+-...+++.++.=++.-. .+.. +..++.+ +.|..+. +.+.|+|+
T Consensus 1 KI~ViGaG~~G~AlA~~la--~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a---~~~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLA--DNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEA---LEDADIII 74 (157)
T ss_dssp EEEEESSSHHHHHHHHHHH--HCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHH---HTT-SEEE
T ss_pred CEEEECcCHHHHHHHHHHH--HcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHH---hCcccEEE
Confidence 6889999998876554444 267899999999976654443211 1110 2345544 4554333 25679999
Q ss_pred eccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205 209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
++--. ..-..+++++.+++++|..++.-
T Consensus 75 iavPs---~~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 75 IAVPS---QAHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp E-S-G---GGHHHHHHHHTTTSHTT-EEEET
T ss_pred ecccH---HHHHHHHHHHhhccCCCCEEEEe
Confidence 86433 34578999999999888877763
No 496
>PRK06141 ornithine cyclodeaminase; Validated
Probab=87.82 E-value=2 Score=44.51 Aligned_cols=96 Identities=13% Similarity=0.152 Sum_probs=56.4
Q ss_pred CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205 130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL 209 (535)
Q Consensus 130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi 209 (535)
...++|+.||||..|.+-+.......+..+|+.++++++..+.-.+.+++.| . .+.. +.+..+ ...++|+|+.
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g-~--~~~~-~~~~~~---av~~aDIVi~ 195 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQG-F--DAEV-VTDLEA---AVRQADIISC 195 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcC-C--ceEE-eCCHHH---HHhcCCEEEE
Confidence 5679999999998777665422212456889999999876443333333334 1 2332 233332 2357999976
Q ss_pred ccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205 210 AALAGNEEEKAKILGHIRKYMKEGGVLLVR 239 (535)
Q Consensus 210 aALVgm~edK~~VL~eL~rvLKPGGvLVvR 239 (535)
..... ..++.. ..++||..+.+-
T Consensus 196 aT~s~-----~pvl~~--~~l~~g~~i~~i 218 (314)
T PRK06141 196 ATLST-----EPLVRG--EWLKPGTHLDLV 218 (314)
T ss_pred eeCCC-----CCEecH--HHcCCCCEEEee
Confidence 54331 233322 567999865543
No 497
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=87.77 E-value=3.6 Score=40.25 Aligned_cols=101 Identities=20% Similarity=0.209 Sum_probs=58.8
Q ss_pred CCCEEEEEccCCChhhHHH-HHhhcCCCc-EEEEEeCC---hhHHH---------------HHHHHHhhcCCcCCCeEEE
Q 041205 131 QLKKVAFVGSGPMPLTSII-LASQHMKST-HFDNIDID---ETANN---------------LARRIVSSDDEIEKRMKFL 190 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~-LAk~~l~Ga-~VtGIDID---peAIe---------------lAR~li~~lG~Ls~rI~Fi 190 (535)
...+|+-||||.+|..... +|+ .|. +|+-+|.| +.-+. .+.+.+.+.. ..-+++.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~---~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~in-p~~~i~~~ 95 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLAR---AGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEIN-PYTEIEAY 95 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHH---cCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHC-CCCEEEEe
Confidence 3689999999977765443 444 455 79999999 32222 1223333332 12234443
Q ss_pred Eccccc--cccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEE
Q 041205 191 TCDIME--VKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLL 237 (535)
Q Consensus 191 ~GDA~e--l~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLV 237 (535)
..+..+ +...+.++|+|+-+. .-.+-|..+++.+.+.+++.-++.
T Consensus 96 ~~~i~~~~~~~~~~~~DlVi~a~--Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 96 DEKITEENIDKFFKDADIVCEAF--DNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred eeeCCHhHHHHHhcCCCEEEECC--CCHHHHHHHHHHHHHHcCCCcEEE
Confidence 333321 111235799999762 223678888899998887644444
No 498
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.76 E-value=1.6 Score=47.47 Aligned_cols=72 Identities=13% Similarity=0.116 Sum_probs=47.3
Q ss_pred CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205 131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA 210 (535)
Q Consensus 131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia 210 (535)
.+++|+.+|+|..|++...+.. ..|..|++.|.++... .++....| |.+..+... ...+.++|+|+.+
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~--~~G~~V~~~D~~~~~~---~~~l~~~g-----i~~~~~~~~--~~~~~~~d~vV~S 81 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLS--ELGCDVVVADDNETAR---HKLIEVTG-----VADISTAEA--SDQLDSFSLVVTS 81 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHH--HCCCEEEEECCChHHH---HHHHHhcC-----cEEEeCCCc--hhHhcCCCEEEeC
Confidence 3578999999988886555544 3688999999765432 22334445 566655321 1223579999998
Q ss_pred cccC
Q 041205 211 ALAG 214 (535)
Q Consensus 211 ALVg 214 (535)
..+.
T Consensus 82 pgi~ 85 (473)
T PRK00141 82 PGWR 85 (473)
T ss_pred CCCC
Confidence 7773
No 499
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=87.70 E-value=2.5 Score=42.42 Aligned_cols=100 Identities=21% Similarity=0.304 Sum_probs=66.0
Q ss_pred CCCCCCEEEEEccCC-ChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc-cccc--CCCC
Q 041205 128 GVAQLKKVAFVGSGP-MPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM-EVKE--KLGE 203 (535)
Q Consensus 128 ~l~~pkRVLeIGSGp-lPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~-el~~--dL~~ 203 (535)
.+.++.+||-.|.|+ +|..++.+|++ .|.+|+.+..+++..+.++ .+| ...-+.....|.. ++.. ...+
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~--~g~~v~~~~~~~~~~~~~~----~~g-~~~v~~~~~~~~~~~~~~~~~~~~ 234 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKA--MGLRVIAIDVGDEKLELAK----ELG-ADAFVDFKKSDDVEAVKELTGGGG 234 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHH----HcC-CcEEEcCCCccHHHHHHHHhcCCC
Confidence 567889999999876 89999999994 5789999999987766553 345 2111111111111 1111 1246
Q ss_pred cceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205 204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS 240 (535)
Q Consensus 204 FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs 240 (535)
+|+|+-++.- ...+..+.+.|+++|+++.-.
T Consensus 235 vd~vl~~~~~------~~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 235 AHAVVVTAVS------AAAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred CCEEEEcCCc------hHHHHHHHHHhhcCCEEEEec
Confidence 9999864332 346778889999999998754
No 500
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=87.63 E-value=1.4 Score=44.82 Aligned_cols=100 Identities=19% Similarity=0.169 Sum_probs=61.0
Q ss_pred EEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC--CCCcceEEecc
Q 041205 134 KVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK--LGEYDCIILAA 211 (535)
Q Consensus 134 RVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d--L~~FDvVfiaA 211 (535)
+|+++-||.+|++.=+. . ..-..|.++|+|+.+++.-+.++... ++++|+.++... ...+|+|+...
T Consensus 2 ~v~dLFsG~Gg~~~gl~-~--~G~~~v~a~e~~~~a~~~~~~N~~~~--------~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLE-K--AGFEIVAANEIDKSAAETYEANFPNK--------LIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHH-H--cCCEEEEEEeCCHHHHHHHHHhCCCC--------CccCccccCchhhcCCCCCEEEeCC
Confidence 68999999877764333 3 12235788999999999888876432 456777665542 35699998753
Q ss_pred c------c----CChhhHHHHHH---HHHhhcccCeEEEEEcccccc
Q 041205 212 L------A----GNEEEKAKILG---HIRKYMKEGGVLLVRSAKGAR 245 (535)
Q Consensus 212 L------V----gm~edK~~VL~---eL~rvLKPGGvLVvRsa~GlR 245 (535)
- . +...++...+. .+.+.++|- .+++-+..|+.
T Consensus 71 PCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~-~~v~ENV~g~~ 116 (275)
T cd00315 71 PCQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPK-YFLLENVKGLL 116 (275)
T ss_pred CChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCC-EEEEEcCcchh
Confidence 1 1 11122332332 334456775 56677776653
Done!