BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041206
(371 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 106/274 (38%), Gaps = 60/274 (21%)
Query: 92 LNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVIT-NGAEIGCLISEGSWV 150
L GH V + L ++ SGSRD + VWD ++G+C++V+ + A + C+ +G V
Sbjct: 195 LYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRV 252
Query: 151 FLGLPN-AVKSWRXXXXXXXXXXXXXXXXXXGSEGGVISVWKGTFVANPFKQVASIRAPL 209
G + VK W G V S+ Q I
Sbjct: 253 VSGAYDFMVKVW-------DPETETCLHTLQGHTNRVYSL-----------QFDGIHV-- 292
Query: 210 WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDEYL 269
+S S DT + R W+++ C+ TL GH + + D L
Sbjct: 293 ----VSGSLDT----------------SIRVWDVETGNCIHTLTGHQSLTSGMELKDNIL 332
Query: 270 FSSSLDETIKIWLYTHTKNNAELSSLFGMLDAEA--------KPVLFSSGKDSAIRLYEL 321
S + D T+KIW K L +L G ++ K + +S D ++L++L
Sbjct: 333 VSGNADSTVKIW---DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 389
Query: 322 PSFKLRARIFSRREVEVDQIGPAGLFFPGDASGS 355
+ + F R V ++ G G+ + AS +
Sbjct: 390 KTGE-----FIRNLVTLESGGSGGVVWRIRASNT 418
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 110/272 (40%), Gaps = 43/272 (15%)
Query: 75 HSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
H +D + L + L GH V L N++ SGS D + VW +G+C+ +
Sbjct: 97 HRIDTNWRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL 155
Query: 135 --------TNGAEIGCLISEGSWVFLGLPNA-----VKSWRXXXXXXXXXXXXXXXXXXG 181
++ +IS + L + NA + + G
Sbjct: 156 VGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSG 215
Query: 182 SEGGVISVW---KGTFVANPFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTT 238
S + VW G + VA++R + D R + + ++F
Sbjct: 216 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--------DGR---RVVSGAYDF---MV 261
Query: 239 RTWNLDNLECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIW-------LYTHTKNNAE 291
+ W+ + C+ TL+GH++ V SL F ++ S SLD +I++W ++T T + +
Sbjct: 262 KVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS- 320
Query: 292 LSSLFGMLDAEAKPVLFSSGKDSAIRLYELPS 323
L+S + D +L S DS ++++++ +
Sbjct: 321 LTSGMELKDN----ILVSGNADSTVKIWDIKT 348
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 81 NTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCV-NVIT 135
T L TL N H+ AVT L N + + S DG V +WD +G + N++T
Sbjct: 347 KTGQCLQTLQGPNKHQSAVT--CLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVT 400
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/246 (19%), Positives = 93/246 (37%), Gaps = 42/246 (17%)
Query: 92 LNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVF 151
++GH V++V + + + S SRD + +W+ +G CV T E WV
Sbjct: 188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE---------WVR 238
Query: 152 LGLPNAVKSWRXXXXXXXXXXXXXXXXXXGSEGGVISVW---KGTFVANPFKQVASIRAP 208
+ PN S + VW A + +
Sbjct: 239 MVRPNQ----------------DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 282
Query: 209 LW-----FCSLSSSNDTRWNSKEEAAVFEFCG---HTTRTWNLDNLECVQTLKGHSDTVT 260
W + S+S + + + F G T + W++ C+ TL GH + V
Sbjct: 283 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 342
Query: 261 SLLFWD--EYLFSSSLDETIKIWLYTHTKNNAELSS---LFGMLD-AEAKPVLFSSGKDS 314
+LF +++ S + D+T+++W Y + + L++ LD + P + + D
Sbjct: 343 GVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 402
Query: 315 AIRLYE 320
++++E
Sbjct: 403 TVKVWE 408
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWD--EYLFSSSLDETIKIW 281
T + W+ EC++T+ GH V+S+ +++ S+S D+TIK+W
Sbjct: 173 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 219
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 12/96 (12%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLF--WDEYLFSSSLDETIKIW-------LYTHTK 287
T + W+ + + +TLKGH+D+V + F + L S S D TIK+W + T
Sbjct: 131 TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHG 190
Query: 288 NNAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPS 323
++ +SS+ M + + + S+ +D I+++E+ +
Sbjct: 191 HDHNVSSVSIMPNGDH---IVSASRDKTIKMWEVQT 223
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
LM L GH V V SG + S + D + VWD + RC+ +
Sbjct: 331 LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 376
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 26/111 (23%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLDETIKIWLYTHTKNNAEL-- 292
T + W + CV+T GH + V + + + S S D+T+++W+ + AEL
Sbjct: 215 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 274
Query: 293 ----------------SSLFGMLDAEAK------PVLFSSGKDSAIRLYEL 321
SS+ +E K P L S +D I+++++
Sbjct: 275 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 325
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 92 LNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSG 128
L+GH+ VT V + + S S D + VWD ++G
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG 140
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 18/86 (20%)
Query: 252 LKGHSDTVTSLLFWDEY--LFSSSLDETIKIWLYT----------HTKNNAELSSLFGML 299
L GH VT ++F + + S+S D TIK+W Y HT + ++S
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDIS-----F 158
Query: 300 DAEAKPVLFSSGKDSAIRLYELPSFK 325
D K +L S D I+L++ F+
Sbjct: 159 DHSGK-LLASCSADMTIKLWDFQGFE 183
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 107/281 (38%), Gaps = 54/281 (19%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVIT-NGAEIGCL-ISE 146
L++L+GH V + G L SGS D V VWD G C +V + + + CL I E
Sbjct: 155 LLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVE 213
Query: 147 GSWVFLGLPNAVKSWRXXXXXXXXXXXXXXXXXXGSEGGVISVWKGTFVANPF------K 200
+ + V R G E V+ T NP+
Sbjct: 214 ----YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH-TPEENPYFVGVLRG 268
Query: 201 QVASIRAPLWFCSL--SSSNDTR---WNSKEEAAVFEFCGHT------------------ 237
+AS+R ++ S S D W+ + ++ GHT
Sbjct: 269 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISA 328
Query: 238 -----TRTWNLDNLECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIW-------LYTH 285
R W+L+N E + TL+GH+ V L D++L S++ D +I+ W +++
Sbjct: 329 SMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSY 388
Query: 286 TKNNAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKL 326
N + F + D + SG ++ +Y L S KL
Sbjct: 389 HHTNLSAITTFYVSDN-----ILVSGSENQFNIYNLRSGKL 424
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 105/281 (37%), Gaps = 54/281 (19%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVIT-NGAEIGCL-ISE 146
L++L+GH V + G L SGS D V VWD G C +V + + + CL I E
Sbjct: 155 LLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVE 213
Query: 147 GSWVFLGLPNAVKSWRXXXXXXXXXXXXXXXXXXGSEGGVISVWKGTFVANPF------K 200
+ + V R G E V+ T NP+
Sbjct: 214 ----YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH-TPEENPYFVGVLRG 268
Query: 201 QVASIRAPLWFCSL--SSSNDTR---WNSKEEAAVFEFCGHT------------------ 237
AS+R ++ S S D W+ + ++ GHT
Sbjct: 269 HXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISA 328
Query: 238 -----TRTWNLDNLECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIW-------LYTH 285
R W+L+N E TL+GH+ V L D++L S++ D +I+ W +++
Sbjct: 329 SXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSY 388
Query: 286 TKNNAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKL 326
N + F + D + SG ++ +Y L S KL
Sbjct: 389 HHTNLSAITTFYVSDN-----ILVSGSENQFNIYNLRSGKL 424
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 218 NDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLF--WDEYLFSSSLD 275
+D W+S V T + W++ + +C++TLKGHS+ V F + S S D
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 276 ETIKIWLYTHTKNNAELSSLFGMLDAEAKPV 306
E+++IW + + L A + PV
Sbjct: 132 ESVRIW-------DVKTGKCLKTLPAHSDPV 155
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 92 LNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
++GHK +++V S SN L S S D + +WD SG+C+ +
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLDETIKIWLYTHTKNNAELSS 294
+ R W++ +C++TL HSD V+++ F + + SSS D +IW + A
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW------DTASGQC 186
Query: 295 LFGMLDAEAKPVLF 308
L ++D + PV F
Sbjct: 187 LKTLIDDDNPPVSF 200
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
L L GH V SN + SGS D V +WD +G+C+ +
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 72/208 (34%), Gaps = 56/208 (26%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNG----AEIGCLI 144
L L H V+ V + + S S DG +WD SG+C+ + +
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 145 SEGSWVFLG-LPNAVKSWRXXXXXXXXXXXXXXXXXXGSEGGVISVWKG------TFVAN 197
G ++ L N +K W S+G + + G AN
Sbjct: 205 PNGKYILAATLDNTLKLWDY------------------SKGKCLKTYTGHKNEKYCIFAN 246
Query: 198 PFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSD 257
S+ W S S N WNL E VQ L+GH+D
Sbjct: 247 -----FSVTGGKWIVSGSEDN------------------LVYIWNLQTKEIVQKLQGHTD 283
Query: 258 TV--TSLLFWDEYLFSSSL--DETIKIW 281
V T+ + + S++L D+TIK++
Sbjct: 284 VVISTACHPTENIIASAALENDKTIKLY 311
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 251 TLKGHSDTVTSLLFWD--EYLFSSSLDETIKIW 281
TL GH+ V+S+ F E+L SSS D+ IKIW
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 53
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 218 NDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLD 275
+D W+S V T + W++ + +C++TLKGHS+ V F + + S S D
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 276 ETIKIWLYTHTKNNAELSSLFGMLDAEAKPV 306
E+++IW + + L A + PV
Sbjct: 132 ESVRIW-------DVKTGKCLKTLPAHSDPV 155
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 92 LNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
++GHK +++V S SN L S S D + +WD SG+C+ +
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLDETIKIWLYTHTKNNAELSS 294
+ R W++ +C++TL HSD V+++ F + + SSS D +IW + A
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW------DTASGQC 186
Query: 295 LFGMLDAEAKPVLF 308
L ++D + PV F
Sbjct: 187 LKTLIDDDNPPVSF 200
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
L L GH V SN + SGS D V +WD +G+C+ +
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 251 TLKGHSDTVTSLLFWD--EYLFSSSLDETIKIW 281
TL GH+ V+S+ F E+L SSS D+ IKIW
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 53
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 72/208 (34%), Gaps = 56/208 (26%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNG----AEIGCLI 144
L L H V+ V + + S S DG +WD SG+C+ + +
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 145 SEGSWVFLG-LPNAVKSWRXXXXXXXXXXXXXXXXXXGSEGGVISVWKG------TFVAN 197
G ++ L N +K W S+G + + G AN
Sbjct: 205 PNGKYILAATLDNTLKLWDY------------------SKGKCLKTYTGHKNEKYCIFAN 246
Query: 198 PFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSD 257
S+ W S S N WNL E VQ L+GH+D
Sbjct: 247 -----FSVTGGKWIVSGSEDN------------------LVYIWNLQTKEIVQKLQGHTD 283
Query: 258 TV--TSLLFWDEYLFSSSL--DETIKIW 281
V T+ + + S++L D+TIK++
Sbjct: 284 VVISTACHPTENIIASAALENDKTIKLF 311
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 218 NDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLD 275
+D W+S V T + W++ + +C++TLKGHS+ V F + + S S D
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 276 ETIKIWLYTHTKNNAELSSLFGMLDAEAKPV 306
E+++IW + + L A + PV
Sbjct: 132 ESVRIW-------DVKTGKCLKTLPAHSDPV 155
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 92 LNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
++GHK +++V S SN L S S D + +WD SG+C+ +
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLDETIKIWLYTHTKNNAELSS 294
+ R W++ +C++TL HSD V+++ F + + SSS D +IW + A
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW------DTASGQC 186
Query: 295 LFGMLDAEAKPVLF 308
L ++D + PV F
Sbjct: 187 LKTLIDDDNPPVSF 200
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
L L GH V SN + SGS D V +WD +G+C+ +
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 72/208 (34%), Gaps = 56/208 (26%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNG----AEIGCLI 144
L L H V+ V + + S S DG +WD SG+C+ + +
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 145 SEGSWVFLG-LPNAVKSWRXXXXXXXXXXXXXXXXXXGSEGGVISVWKG------TFVAN 197
G ++ L N +K W S+G + + G AN
Sbjct: 205 PNGKYILAATLDNTLKLWDY------------------SKGKCLKTYTGHKNEKYCIFAN 246
Query: 198 PFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSD 257
S+ W S S N WNL E VQ L+GH+D
Sbjct: 247 -----FSVTGGKWIVSGSEDN------------------LVYIWNLQTKEIVQKLQGHTD 283
Query: 258 TV--TSLLFWDEYLFSSSL--DETIKIW 281
V T+ + + S++L D+TIK+W
Sbjct: 284 VVISTACHPTENIIASAALENDKTIKLW 311
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 251 TLKGHSDTVTSLLFWD--EYLFSSSLDETIKIWLYTHTKNNAELSS-LFGMLD---AEAK 304
TL GH+ V+S+ F E+L +SS D+ IKIW K +S G+ D +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 305 PVLFSSGKDSAIRLYELPSFK-LRARIFSRREVEVDQIGP-AGLFFPGDASGSVGVW 359
+L S+ D ++++++ S K L+ V P + L G SV +W
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 218 NDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLD 275
+D W+S V T + W++ + +C++TLKGHS+ V F + + S S D
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 276 ETIKIWLYTHTKNNAELSSLFGMLDAEAKPV 306
E+++IW + + L A + PV
Sbjct: 135 ESVRIW-------DVKTGKCLKTLPAHSDPV 158
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 92 LNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
++GHK +++V S SN L S S D + +WD SG+C+ +
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLDETIKIWLYTHTKNNAELSS 294
+ R W++ +C++TL HSD V+++ F + + SSS D +IW + A
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW------DTASGQC 189
Query: 295 LFGMLDAEAKPVLF 308
L ++D + PV F
Sbjct: 190 LKTLIDDDNPPVSF 203
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
L L GH V SN + SGS D V +WD +G+C+ +
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 241 WNLDNLECVQTLKGHSDTV--TSLLFWDEYLFSSSL--DETIKIW 281
WNL E VQ L+GH+D V T+ + + S++L D+TIK+W
Sbjct: 270 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 251 TLKGHSDTVTSLLFWD--EYLFSSSLDETIKIW 281
TL GH+ V+S+ F E+L SSS D+ IKIW
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 56
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 218 NDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLD 275
+D W+S V T + W++ + +C++TLKGHS+ V F + + S S D
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 276 ETIKIWLYTHTKNNAELSSLFGMLDAEAKPV 306
E+++IW + + L A + PV
Sbjct: 135 ESVRIW-------DVKTGKCLKTLPAHSDPV 158
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 92 LNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
++GHK +++V S SN L S S D + +WD SG+C+ +
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLDETIKIWLYTHTKNNAELSS 294
+ R W++ +C++TL HSD V+++ F + + SSS D +IW + A
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW------DTASGQC 189
Query: 295 LFGMLDAEAKPVLF 308
L ++D + PV F
Sbjct: 190 LKTLIDDDNPPVSF 203
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
L L GH V SN + SGS D V +WD +G+C+ +
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 241 WNLDNLECVQTLKGHSDTV--TSLLFWDEYLFSSSL--DETIKIW 281
WNL E VQ L+GH+D V T+ + + S++L D+TIK+W
Sbjct: 270 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 251 TLKGHSDTVTSLLFWD--EYLFSSSLDETIKIW 281
TL GH+ V+S+ F E+L SSS D+ IKIW
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 56
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 218 NDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLD 275
+D W+S V T + W++ + +C++TLKGHS+ V F + + S S D
Sbjct: 74 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 133
Query: 276 ETIKIWLYTHTKNNAELSSLFGMLDAEAKPV 306
E+++IW + + L A + PV
Sbjct: 134 ESVRIW-------DVKTGKCLKTLPAHSDPV 157
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 92 LNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
++GHK +++V S SN L S S D + +WD SG+C+ +
Sbjct: 66 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 108
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLDETIKIWLYTHTKNNAELSS 294
+ R W++ +C++TL HSD V+++ F + + SSS D +IW + A
Sbjct: 135 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW------DTASGQC 188
Query: 295 LFGMLDAEAKPVLF 308
L ++D + PV F
Sbjct: 189 LKTLIDDDNPPVSF 202
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
L L GH V SN + SGS D V +WD +G+C+ +
Sbjct: 105 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 150
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 241 WNLDNLECVQTLKGHSDTV--TSLLFWDEYLFSSSL--DETIKIW 281
WNL E VQ L+GH+D V T+ + + S++L D+TIK+W
Sbjct: 269 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 251 TLKGHSDTVTSLLFWD--EYLFSSSLDETIKIW 281
TL GH+ V+S+ F E+L SSS D+ IKIW
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 55
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 218 NDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLD 275
+D W+S V T + W++ + +C++TLKGHS+ V F + + S S D
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 276 ETIKIWLYTHTKNNAELSSLFGMLDAEAKPV 306
E+++IW + + L A + PV
Sbjct: 135 ESVRIW-------DVKTGKCLKTLPAHSDPV 158
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 92 LNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
++GHK +++V S SN L S S D + +WD SG+C+ +
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLDETIKIWLYTHTKNNAELSS 294
+ R W++ +C++TL HSD V+++ F + + SSS D +IW + A
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW------DTASGQC 189
Query: 295 LFGMLDAEAKPVLF 308
L ++D + PV F
Sbjct: 190 LKTLIDDDNPPVSF 203
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
L L GH V SN + SGS D V +WD +G+C+ +
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 72/208 (34%), Gaps = 56/208 (26%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN----GAEIGCLI 144
L L H V+ V + + S S DG +WD SG+C+ + +
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 145 SEGSWVFLG-LPNAVKSWRXXXXXXXXXXXXXXXXXXGSEGGVISVWKG------TFVAN 197
G ++ L N +K W S+G + + G AN
Sbjct: 208 PNGKYILAATLDNTLKLWDY------------------SKGKCLKTYTGHKNEKYCIFAN 249
Query: 198 PFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSD 257
S+ W S S N WNL E VQ L+GH+D
Sbjct: 250 -----FSVTGGKWIVSGSEDN------------------LVYIWNLQTKEIVQKLQGHTD 286
Query: 258 TV--TSLLFWDEYLFSSSL--DETIKIW 281
V T+ + + S++L D+TIK+W
Sbjct: 287 VVISTACHPTENIIASAALENDKTIKLW 314
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 251 TLKGHSDTVTSLLFWD--EYLFSSSLDETIKIW 281
TL GH+ V+S+ F E+L SSS D+ IKIW
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 56
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 218 NDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLD 275
+D W+S V T + W++ + +C++TLKGHS+ V F + + S S D
Sbjct: 68 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 127
Query: 276 ETIKIWLYTHTKNNAELSSLFGMLDAEAKPV 306
E+++IW + + L A + PV
Sbjct: 128 ESVRIW-------DVKTGKCLKTLPAHSDPV 151
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 92 LNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
++GHK +++V S SN L S S D + +WD SG+C+ +
Sbjct: 60 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 102
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLDETIKIWLYTHTKNNAELSS 294
+ R W++ +C++TL HSD V+++ F + + SSS D +IW + A
Sbjct: 129 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW------DTASGQC 182
Query: 295 LFGMLDAEAKPVLF 308
L ++D + PV F
Sbjct: 183 LKTLIDDDNPPVSF 196
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
L L GH V SN + SGS D V +WD +G+C+ +
Sbjct: 99 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 144
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 72/208 (34%), Gaps = 56/208 (26%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN----GAEIGCLI 144
L L H V+ V + + S S DG +WD SG+C+ + +
Sbjct: 141 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 200
Query: 145 SEGSWVFLG-LPNAVKSWRXXXXXXXXXXXXXXXXXXGSEGGVISVWKG------TFVAN 197
G ++ L N +K W S+G + + G AN
Sbjct: 201 PNGKYILAATLDNTLKLWDY------------------SKGKCLKTYTGHKNEKYCIFAN 242
Query: 198 PFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSD 257
S+ W S S N WNL E VQ L+GH+D
Sbjct: 243 -----FSVTGGKWIVSGSEDN------------------LVYIWNLQTKEIVQKLQGHTD 279
Query: 258 TV--TSLLFWDEYLFSSSL--DETIKIW 281
V T+ + + S++L D+TIK+W
Sbjct: 280 VVISTACHPTENIIASAALENDKTIKLW 307
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 251 TLKGHSDTVTSLLFWD--EYLFSSSLDETIKIW 281
TL GH+ V+S+ F E+L SSS D+ IKIW
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 49
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 218 NDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLD 275
+D W+S V T + W++ + +C++TLKGHS+ V F + + S S D
Sbjct: 70 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 129
Query: 276 ETIKIWLYTHTKNNAELSSLFGMLDAEAKPV 306
E+++IW + + L A + PV
Sbjct: 130 ESVRIW-------DVKTGKCLKTLPAHSDPV 153
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 92 LNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
++GHK +++V S SN L S S D + +WD SG+C+ +
Sbjct: 62 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 104
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLDETIKIWLYTHTKNNAELSS 294
+ R W++ +C++TL HSD V+++ F + + SSS D +IW + A
Sbjct: 131 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW------DTASGQC 184
Query: 295 LFGMLDAEAKPVLF 308
L ++D + PV F
Sbjct: 185 LKTLIDDDNPPVSF 198
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
L L GH V SN + SGS D V +WD +G+C+ +
Sbjct: 101 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 146
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 72/208 (34%), Gaps = 56/208 (26%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN----GAEIGCLI 144
L L H V+ V + + S S DG +WD SG+C+ + +
Sbjct: 143 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 202
Query: 145 SEGSWVFLG-LPNAVKSWRXXXXXXXXXXXXXXXXXXGSEGGVISVWKG------TFVAN 197
G ++ L N +K W S+G + + G AN
Sbjct: 203 PNGKYILAATLDNTLKLWDY------------------SKGKCLKTYTGHKNEKYCIFAN 244
Query: 198 PFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSD 257
S+ W S S N WNL E VQ L+GH+D
Sbjct: 245 -----FSVTGGKWIVSGSEDN------------------LVYIWNLQTKEIVQKLQGHTD 281
Query: 258 TV--TSLLFWDEYLFSSSL--DETIKIW 281
V T+ + + S++L D+TIK+W
Sbjct: 282 VVISTACHPTENIIASAALENDKTIKLW 309
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 251 TLKGHSDTVTSLLFWD--EYLFSSSLDETIKIW 281
TL GH+ V+S+ F E+L SSS D+ IKIW
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 51
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 218 NDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLD 275
+D W+S V T + W++ + +C++TLKGHS+ V F + + S S D
Sbjct: 93 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 152
Query: 276 ETIKIWLYTHTKNNAELSSLFGMLDAEAKPV 306
E+++IW + + L A + PV
Sbjct: 153 ESVRIW-------DVKTGKCLKTLPAHSDPV 176
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 92 LNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
++GHK +++V S SN L S S D + +WD SG+C+ +
Sbjct: 85 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 127
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLDETIKIWLYTHTKNNAELSS 294
+ R W++ +C++TL HSD V+++ F + + SSS D +IW + A
Sbjct: 154 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW------DTASGQC 207
Query: 295 LFGMLDAEAKPVLF 308
L ++D + PV F
Sbjct: 208 LKTLIDDDNPPVSF 221
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/110 (19%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 239 RTWNLDNLECVQTLKGHSDTVTSLLFWD---EYLFSSSLDETIKIWLY-------THTKN 288
R W+ + +C++TL + S + + +Y+ +++LD T+K+W Y T+T +
Sbjct: 198 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 257
Query: 289 NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEV 338
E +F + S +D+ + ++ L + ++ ++ +V +
Sbjct: 258 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 307
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 241 WNLDNLECVQTLKGHSDTV--TSLLFWDEYLFSSSL--DETIKIW 281
WNL E VQ L+GH+D V T+ + + S++L D+TIK+W
Sbjct: 288 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
L L GH V SN + SGS D V +WD +G+C+ +
Sbjct: 124 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 169
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 251 TLKGHSDTVTSLLFWD--EYLFSSSLDETIKIW 281
TL GH+ V+S+ F E+L SSS D+ IKIW
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 74
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 218 NDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLD 275
+D W+S V T + W++ + +C++TLKGHS+ V F + + S S D
Sbjct: 86 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 145
Query: 276 ETIKIWLYTHTKNNAELSSLFGMLDAEAKPV 306
E+++IW + + L A + PV
Sbjct: 146 ESVRIW-------DVKTGKCLKTLPAHSDPV 169
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 92 LNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
++GHK +++V S SN L S S D + +WD SG+C+ +
Sbjct: 78 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 120
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLDETIKIWLYTHTKNNAELSS 294
+ R W++ +C++TL HSD V+++ F + + SSS D +IW + A
Sbjct: 147 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW------DTASGQC 200
Query: 295 LFGMLDAEAKPVLF 308
L ++D + PV F
Sbjct: 201 LKTLIDDDNPPVSF 214
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
L L GH V SN + SGS D V +WD +G+C+ +
Sbjct: 117 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 162
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 72/208 (34%), Gaps = 56/208 (26%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN----GAEIGCLI 144
L L H V+ V + + S S DG +WD SG+C+ + +
Sbjct: 159 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 218
Query: 145 SEGSWVFLG-LPNAVKSWRXXXXXXXXXXXXXXXXXXGSEGGVISVWKG------TFVAN 197
G ++ L N +K W S+G + + G AN
Sbjct: 219 PNGKYILAATLDNTLKLWDY------------------SKGKCLKTYTGHKNEKYCIFAN 260
Query: 198 PFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSD 257
S+ W S S N WNL E VQ L+GH+D
Sbjct: 261 -----FSVTGGKWIVSGSEDN------------------LVYIWNLQTKEIVQKLQGHTD 297
Query: 258 TV--TSLLFWDEYLFSSSL--DETIKIW 281
V T+ + + S++L D+TIK+W
Sbjct: 298 VVISTACHPTENIIASAALENDKTIKLW 325
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 251 TLKGHSDTVTSLLFWD--EYLFSSSLDETIKIW 281
TL GH+ V+S+ F E+L SSS D+ IKIW
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 67
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 218 NDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLD 275
+D W+S V T + W++ + +C++TLKGHS+ V F + + S S D
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 128
Query: 276 ETIKIWLYTHTKNNAELSSLFGMLDAEAKPV 306
E+++IW + + L A + PV
Sbjct: 129 ESVRIW-------DVKTGKCLKTLPAHSDPV 152
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 92 LNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
++GHK +++V S SN L S S D + +WD SG+C+ +
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLDETIKIWLYTHTKNNAELSS 294
+ R W++ +C++TL HSD V+++ F + + SSS D +IW + A
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW------DTASGQC 183
Query: 295 LFGMLDAEAKPVLF 308
L ++D + PV F
Sbjct: 184 LKTLIDDDNPPVSF 197
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
L L GH V SN + SGS D V +WD +G+C+ +
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 72/208 (34%), Gaps = 56/208 (26%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN----GAEIGCLI 144
L L H V+ V + + S S DG +WD SG+C+ + +
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 201
Query: 145 SEGSWVFLG-LPNAVKSWRXXXXXXXXXXXXXXXXXXGSEGGVISVWKG------TFVAN 197
G ++ L N +K W S+G + + G AN
Sbjct: 202 PNGKYILAATLDNTLKLWDY------------------SKGKCLKTYTGHKNEKYCIFAN 243
Query: 198 PFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSD 257
S+ W S S N WNL E VQ L+GH+D
Sbjct: 244 -----FSVTGGKWIVSGSEDN------------------LVYIWNLQTKEIVQKLQGHTD 280
Query: 258 TV--TSLLFWDEYLFSSSL--DETIKIW 281
V T+ + + S++L D+TIK+W
Sbjct: 281 VVISTACHPTENIIASAALENDKTIKLW 308
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 251 TLKGHSDTVTSLLFWD--EYLFSSSLDETIKIW 281
TL GH+ V+S+ F E+L SSS D+ IKIW
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 50
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 218 NDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLD 275
+D W+S V T + W++ + +C++TLKGHS+ V F + + S S D
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 276 ETIKIW 281
E+++IW
Sbjct: 132 ESVRIW 137
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 92 LNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
++GHK +++V S SN L S S D + +WD SG+C+ +
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 84/231 (36%), Gaps = 56/231 (24%)
Query: 87 ATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISE 146
A + L GH KAV++V L S S D + +W G+ I+ G ++G IS+
Sbjct: 17 ALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLG--ISD 73
Query: 147 GSW-------VFLGLPNAVKSWRXXXXXXXXXXXXXXXXXXGSEGGVISVWKGTFVANPF 199
+W V +K W S G + KG
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDV------------------SSGKCLKTLKG------- 108
Query: 200 KQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTV 259
+ FC +N + V + R W++ C++TL HSD V
Sbjct: 109 ------HSNYVFC-------CNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPV 155
Query: 260 TSLLFWDE--YLFSSSLDETIKIWLYTHTKNNAELSSLFGMLDAEAKPVLF 308
+++ F + + SSS D +IW + A L ++D + PV F
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIW------DTASGQCLKTLIDDDNPPVSF 200
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 241 WNLDNLECVQTLKGHSDTV--TSLLFWDEYLFSSSL--DETIKIW 281
WNL E VQ L+GH+D V T+ + + S++L D+TIK+W
Sbjct: 267 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 245 NLECVQTLKGHSDTVTSLLFWD--EYLFSSSLDETIKIW 281
N + TL GH+ V+S+ F E+L SSS D+ IKIW
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 53
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 218 NDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLD 275
+D W+S V T + W++ + +C++TLKGHS+ V F + + S S D
Sbjct: 65 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 124
Query: 276 ETIKIWLYTHTKNNAELSSLFGMLDAEAKPV 306
E+++IW + + L A + PV
Sbjct: 125 ESVRIW-------DVKTGKCLKTLPAHSDPV 148
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 92 LNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
++GHK +++V S SN L S S D + +WD SG+C+ +
Sbjct: 57 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 99
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLDETIKIWLYTHTKNNAELSS 294
+ R W++ +C++TL HSD V+++ F + + SSS D +IW + A
Sbjct: 126 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW------DTASGQC 179
Query: 295 LFGMLDAEAKPVLF 308
L ++D + PV F
Sbjct: 180 LKTLIDDDNPPVSF 193
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
L L GH V SN + SGS D V +WD +G+C+ +
Sbjct: 96 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 141
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 72/208 (34%), Gaps = 56/208 (26%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN----GAEIGCLI 144
L L H V+ V + + S S DG +WD SG+C+ + +
Sbjct: 138 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 197
Query: 145 SEGSWVFLG-LPNAVKSWRXXXXXXXXXXXXXXXXXXGSEGGVISVWKG------TFVAN 197
G ++ L N +K W S+G + + G AN
Sbjct: 198 PNGKYILAATLDNTLKLWDY------------------SKGKCLKTYTGHKNEKYCIFAN 239
Query: 198 PFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSD 257
S+ W S S N WNL E VQ L+GH+D
Sbjct: 240 -----FSVTGGKWIVSGSEDN------------------LVYIWNLQTKEIVQKLQGHTD 276
Query: 258 TV--TSLLFWDEYLFSSSL--DETIKIW 281
V T+ + + S++L D+TIK+W
Sbjct: 277 VVISTACHPTENIIASAALENDKTIKLW 304
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 251 TLKGHSDTVTSLLFWD--EYLFSSSLDETIKIW 281
TL GH+ V+S+ F E+L SSS D+ IKIW
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 46
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 218 NDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLD 275
+D W+S V T + W++ + +C++TLKGHS+ V F + + S S D
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 128
Query: 276 ETIKIWLYTHTKNNAELSSLFGMLDAEAKPV 306
E+++IW + + L A + PV
Sbjct: 129 ESVRIW-------DVKTGKCLKTLPAHSDPV 152
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 92 LNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
++GHK +++V S SN L S S D + +WD SG+C+ +
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLDETIKIWLYTHTKNNAELSS 294
+ R W++ +C++TL HSD V+++ F + + SSS D +IW + A
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW------DTASGQC 183
Query: 295 LFGMLDAEAKPVLF 308
L ++D + PV F
Sbjct: 184 LKTLIDDDNPPVSF 197
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
L L GH V SN + SGS D V +WD +G+C+ +
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 72/208 (34%), Gaps = 56/208 (26%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN----GAEIGCLI 144
L L H V+ V + + S S DG +WD SG+C+ + +
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 201
Query: 145 SEGSWVFLG-LPNAVKSWRXXXXXXXXXXXXXXXXXXGSEGGVISVWKG------TFVAN 197
G ++ L N +K W S+G + + G AN
Sbjct: 202 PNGKYILAATLDNTLKLWDY------------------SKGKCLKTYTGHKNEKYCIFAN 243
Query: 198 PFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSD 257
S+ W S S N WNL E VQ L+GH+D
Sbjct: 244 -----FSVTGGKWIVSGSEDN------------------LVYIWNLQTKEIVQKLQGHTD 280
Query: 258 TV--TSLLFWDEYLFSSSL--DETIKIW 281
V T+ + + S++L D+TIK+W
Sbjct: 281 VVISTACHPTENIIASAALENDKTIKLW 308
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 251 TLKGHSDTVTSLLFWD--EYLFSSSLDETIKIW 281
TL GH+ V+S+ F E+L SSS D+ IKIW
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 50
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIW 281
T + WN E V+TL GH + L + D + S S D TI++W
Sbjct: 277 TIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLW 321
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 236 HTTRTWNLDNLECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIW 281
+T + W+ + LEC + L GH+ +V L + + + + S D T+++W
Sbjct: 153 NTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 198
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 236 HTTRTWNLDNLECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIW 281
+T R W+++ C++ L+GH + V + F ++ + S + D IK+W
Sbjct: 316 NTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVW 361
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 69 FLHSWVHSVDGDNT-----TNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVW 123
F ++ S GD T T++ + LNGHK+ + L + SGS D + +W
Sbjct: 264 FDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA--CLQYRDRLVVSGSSDNTIRLW 321
Query: 124 DRDSGRCVNVITNGAEI 140
D + G C+ V+ E+
Sbjct: 322 DIECGACLRVLEGHEEL 338
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 250 QTLKGHSDTVTSLLFWDEYLFSSSLDETIKIW 281
+ L GH V + F D+Y+ S+S D TIK+W
Sbjct: 250 RVLVGHRAAVNVVDFDDKYIVSASGDRTIKVW 281
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 248 CVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIW 281
C++TL HS V L F + + SSS D+TI IW
Sbjct: 377 CLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 410
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 84 NSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAE 139
N+L L GH +V + L + +GS D V VWD ++G +N + + E
Sbjct: 161 NTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCE 214
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 218 NDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLD 275
+D W+S V T + W++ + +C++TLKGHS+ V F + + S S D
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 276 ETIKIW 281
E+++IW
Sbjct: 132 ESVRIW 137
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 92 LNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
++GHK +++V S SN L S S D + +WD SG+C+ +
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 84/231 (36%), Gaps = 56/231 (24%)
Query: 87 ATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISE 146
A + L GH KAV++V L S S D + +W G+ I+ G ++G IS+
Sbjct: 17 ALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLG--ISD 73
Query: 147 GSW-------VFLGLPNAVKSWRXXXXXXXXXXXXXXXXXXGSEGGVISVWKGTFVANPF 199
+W V +K W S G + KG
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDV------------------SSGKCLKTLKG------- 108
Query: 200 KQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTV 259
+ FC +N + V + R W++ C++TL HSD V
Sbjct: 109 ------HSNYVFC-------CNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPV 155
Query: 260 TSLLFWDE--YLFSSSLDETIKIWLYTHTKNNAELSSLFGMLDAEAKPVLF 308
+++ F + + SSS D +IW + A L ++D + PV F
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIW------DTASGQCLKTLIDDDNPPVSF 200
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 72/208 (34%), Gaps = 56/208 (26%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN----GAEIGCLI 144
L L H V+ V + + S S DG +WD SG+C+ + +
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 145 SEGSWVFLG-LPNAVKSWRXXXXXXXXXXXXXXXXXXGSEGGVISVWKG------TFVAN 197
G ++ L N +K W S+G + + G AN
Sbjct: 205 PNGKYILAATLDNTLKLWDY------------------SKGKCLKTYTGHKNEKYCIFAN 246
Query: 198 PFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSD 257
S+ W S S N WNL E VQ L+GH+D
Sbjct: 247 -----FSVTGGKWIVSGSEDN------------------MVYIWNLQTKEIVQKLQGHTD 283
Query: 258 TV--TSLLFWDEYLFSSSL--DETIKIW 281
V T+ + + S++L D+TIK+W
Sbjct: 284 VVISTACHPTENIIASAALENDKTIKLW 311
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 245 NLECVQTLKGHSDTVTSLLFWD--EYLFSSSLDETIKIW 281
N + TL GH+ V+S+ F E+L SSS D+ IKIW
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 53
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 218 NDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLD 275
+D W+S V T + W++ + +C++TLKGHS+ V F + + S S D
Sbjct: 91 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 150
Query: 276 ETIKIWLYTHTKNNAELSSLFGMLDAEAKPV 306
E+++IW + + L A + PV
Sbjct: 151 ESVRIW-------DVKTGKCLKTLPAHSDPV 174
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 92 LNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
++GHK +++V S SN L S S D + +WD SG+C+ +
Sbjct: 83 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 125
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLDETIKIWLYTHTKNNAELSS 294
+ R W++ +C++TL HSD V+++ F + + SSS D +IW + A
Sbjct: 152 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW------DTASGQC 205
Query: 295 LFGMLDAEAKPVLF 308
L ++D + PV F
Sbjct: 206 LKTLIDDDNPPVSF 219
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
L L GH V SN + SGS D V +WD +G+C+ +
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 167
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 72/208 (34%), Gaps = 56/208 (26%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGC----LI 144
L L H V+ V + + S S DG +WD SG+C+ + +
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 223
Query: 145 SEGSWVFLG-LPNAVKSWRXXXXXXXXXXXXXXXXXXGSEGGVISVWKG------TFVAN 197
G ++ L N +K W S+G + + G AN
Sbjct: 224 PNGKYILAATLDNTLKLWDY------------------SKGKCLKTYTGHKNEKYCIFAN 265
Query: 198 PFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSD 257
S+ W S S N WNL E VQ L+GH+D
Sbjct: 266 -----FSVTGGKWIVSGSEDN------------------LVYIWNLQTKEIVQKLQGHTD 302
Query: 258 TV--TSLLFWDEYLFSSSL--DETIKIW 281
V T+ + + S++L D+TIK+W
Sbjct: 303 VVISTACHPTENIIASAALENDKTIKLW 330
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 251 TLKGHSDTVTSLLFWD--EYLFSSSLDETIKIW 281
TL GH+ V+S+ F E+L SSS D+ IKIW
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 72
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 236 HTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIW------LYTHTK 287
H+ R WNL N +C GH+ V S+ F + + S D +++W ++T ++
Sbjct: 89 HSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSR 148
Query: 288 N-NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKL 326
+ + S + PV+ S G D+ +++++L + +L
Sbjct: 149 GAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRL 188
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 72 SWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCV 131
SW HS+ N N K GH K V +V + ++ SG RD + VW+ G C+
Sbjct: 86 SWDHSLRLWNLQNGQCQ-YKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV-KGECM 143
Query: 132 NVITNGAE 139
+ ++ GA
Sbjct: 144 HTLSRGAH 151
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEI 140
+ L GH VT+V + + S +DG +WD G ++ + GA I
Sbjct: 189 VTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPI 240
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 91 KLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRC 130
+L GH V++V L + N S S D + +W+ +G+C
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQC 101
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIW------LYT-HTK 287
T R W+L + GH+ V S+ F + + S S D+TIK+W YT +
Sbjct: 86 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE 145
Query: 288 NNAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRA 328
+++E S + P++ S G D ++++ L + KL+
Sbjct: 146 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT 186
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 43 FGLAAMAIRVCNNWISDSCVYGDKCRFLH-SWVHSVDG-----DNTTNSLATLMKLNGHK 96
+G+ A+R ++++SD + D L SW DG D TT + T + GH
Sbjct: 52 YGIPQRALRGHSHFVSDVVISSDGQFALSGSW----DGTLRLWDLTTGT--TTRRFVGHT 105
Query: 97 KAVTNVGLPSGSNKLYSGSRDGRVSVWD 124
K V +V S + ++ SGSRD + +W+
Sbjct: 106 KDVLSVAFSSDNRQIVSGSRDKTIKLWN 133
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIW------LYT-HTK 287
T R W+L + GH+ V S+ F + + S S D+TIK+W YT +
Sbjct: 109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE 168
Query: 288 NNAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRA 328
+++E S + P++ S G D ++++ L + KL+
Sbjct: 169 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT 209
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 43 FGLAAMAIRVCNNWISDSCVYGDKCRFLH-SWVHSVDG-----DNTTNSLATLMKLNGHK 96
+G+ A+R ++++SD + D L SW DG D TT + T + GH
Sbjct: 75 YGIPQRALRGHSHFVSDVVISSDGQFALSGSW----DGTLRLWDLTTGT--TTRRFVGHT 128
Query: 97 KAVTNVGLPSGSNKLYSGSRDGRVSVWD 124
K V +V S + ++ SGSRD + +W+
Sbjct: 129 KDVLSVAFSSDNRQIVSGSRDKTIKLWN 156
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 239 RTWNLDNLECVQTLKGHSDTVTSLLFWD--EYLFSSSLDETIKIWLYTHTKNNAELSSLF 296
R W+++N + V L+GH + SL ++ + L S S D T++IW + + LS
Sbjct: 148 RIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED 207
Query: 297 GMLDAEAKP----VLFSSGKDSAIRLYELPSFKLRARIFSRRE 335
G+ P + + D A+R+++ + L R+ S E
Sbjct: 208 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE 250
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 89 LMKLNGHKKAVTNVG-LPSGSNKLYSGSRDGRVSVWDRDSGRC---VNVITNGAEIGCLI 144
+M L GH++ + ++ PSG +KL SGS D V +WD +G+C +++ +
Sbjct: 158 VMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP 216
Query: 145 SEGSWVFLG-LPNAVKSW 161
+G ++ G L AV+ W
Sbjct: 217 GDGKYIAAGSLDRAVRVW 234
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 82 TTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSG 128
T NS + GHK V +V + SGS+D V WD+ SG
Sbjct: 296 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 239 RTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIW 281
+ W+L+ EC T+ GH+++V F DE L S S D T+++W
Sbjct: 726 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 94 GHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSG 128
GHKKAV ++ + L S S D + VW+ +G
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1035
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 239 RTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIW 281
+ W+L+ EC T+ GH+++V F DE L S S D T+++W
Sbjct: 733 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 94 GHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSG 128
GHKKAV ++ + L S S D + VW+ +G
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1042
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 12/92 (13%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWD--EYLFSSSLDETIKIW------LYTHTKN 288
T + WN N + +QTL GHS +V + F + + S+S D+T+K+W L T T +
Sbjct: 244 TVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGH 302
Query: 289 NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYE 320
+ SS++G+ + + S+ D ++L+
Sbjct: 303 S---SSVWGVAFSPDGQTIASASDDKTVKLWN 331
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 12/92 (13%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWD--EYLFSSSLDETIKIW------LYTHTKN 288
T + WN N + +QTL GHS +V + F + + S+S D+T+K+W L T T +
Sbjct: 367 TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH 425
Query: 289 NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYE 320
+ SS++G+ + + S+ D ++L+
Sbjct: 426 S---SSVWGVAFSPDDQTIASASDDKTVKLWN 454
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 12/92 (13%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWD--EYLFSSSLDETIKIW------LYTHTKN 288
T + WN N + +QTL GHS +V + F + + S+S D+T+K+W L T T +
Sbjct: 80 TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH 138
Query: 289 NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYE 320
+ SS++G+ + + S+ D ++L+
Sbjct: 139 S---SSVWGVAFSPDGQTIASASDDKTVKLWN 167
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWD--EYLFSSSLDETIKIWLYTHTKNNAELSS 294
T + WN N + +QTL GHS +V + F + + S+S D+T+K+W +N L +
Sbjct: 449 TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW----NRNGQLLQT 503
Query: 295 LFGMLDAEAKPVLFS 309
L G + + V FS
Sbjct: 504 LTGH-SSSVRGVAFS 517
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWD--EYLFSSSLDETIKIWLYTHTKNNAELSS 294
T + WN N + +QTL GHS +V + F + + S+S D+T+K+W +N L +
Sbjct: 203 TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW----NRNGQLLQT 257
Query: 295 LFG 297
L G
Sbjct: 258 LTG 260
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWD--EYLFSSSLDETIKIWLYTHTKNNAELSS 294
T + WN N + +QTL GHS +V + F + + S+S D+T+K+W +N L +
Sbjct: 39 TVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW----NRNGQLLQT 93
Query: 295 LFGMLDAEAKPVLFS 309
L G + + V FS
Sbjct: 94 LTGH-SSSVRGVAFS 107
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWD--EYLFSSSLDETIKIWLYTHTKNNAELSS 294
T + WN N + +QTL GHS +V + F + + S+S D+T+K+W +N L +
Sbjct: 162 TVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW----NRNGQLLQT 216
Query: 295 LFGMLDAEAKPVLFS 309
L G + + V FS
Sbjct: 217 LTGH-SSSVRGVAFS 230
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWD--EYLFSSSLDETIKIW 281
T + WN N + +QTL GHS +V + F + + S+S D+T+K+W
Sbjct: 531 TVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWD--EYLFSSSLDETIKIWLYTHTKNNAELSS 294
T + WN N + +QTL GHS +V + F + + S+S D+T+K+W +N L +
Sbjct: 326 TVKLWNR-NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW----NRNGQLLQT 380
Query: 295 LFGMLDAEAKPVLFS 309
L G + + V FS
Sbjct: 381 LTGH-SSSVRGVAFS 394
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 239 RTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIW 281
+ W+L+ EC T+ GH+++V F D+ L S S D T+K+W
Sbjct: 732 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 86 LATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLIS 145
L L +L GH V S L +G +G + +W+ +G +++ +E G +
Sbjct: 1123 LLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGA-AT 1181
Query: 146 EGSWV 150
G WV
Sbjct: 1182 HGGWV 1186
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 23/152 (15%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLDETIKIWLYTHTKNNAELSS 294
T R W++ E Q GH V S+ + + S S D+TIK+W T L++
Sbjct: 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW----TIKGQCLAT 143
Query: 295 LFGMLD--AEAKPV-----------LFSSGKDSAIRLYELPSFKLRARIFSRR-EVEVDQ 340
L G D ++ + V + S+G D ++ + L F++ A +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 341 IGPAG-LFFPGDASGSVGVWKWLLAEQQKMET 371
P G L G + +W LA ++ M T
Sbjct: 204 ASPDGTLIASAGKDGEIMLWN--LAAKKAMYT 233
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 88 TLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
T + GHK V +V + ++ + SGSRD + VW G+C+ +
Sbjct: 99 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATL 144
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--------YLFSSSLDETIKIWLYTHTKN 288
T + W + +C+ TL GH+D V+ + + S+ D+ +K W +
Sbjct: 130 TIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 289 NAEL----SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREV 336
A+ S++ + + ++ S+GKD I L+ L + K + ++ EV
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 23/152 (15%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLDETIKIWLYTHTKNNAELSS 294
T R W++ E Q GH V S+ + + S S D+TIK+W T L++
Sbjct: 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW----TIKGQCLAT 143
Query: 295 LFGMLD--AEAKPV-----------LFSSGKDSAIRLYELPSFKLRARIFSRR-EVEVDQ 340
L G D ++ + V + S+G D ++ + L F++ A +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 341 IGPAG-LFFPGDASGSVGVWKWLLAEQQKMET 371
P G L G + +W LA ++ M T
Sbjct: 204 ASPDGTLIASAGKDGEIMLWN--LAAKKAMYT 233
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 88 TLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
T + GHK V +V + ++ + SGSRD + VW G+C+ +
Sbjct: 99 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATL 144
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--------YLFSSSLDETIKIWLYTHTKN 288
T + W + +C+ TL GH+D V+ + + S+ D+ +K W +
Sbjct: 130 TIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 289 NAEL----SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREV 336
A+ S++ + + ++ S+GKD I L+ L + K + ++ EV
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWD--EYLFSSSLDETIKIW 281
T + W+ CV TL+GH V+ +F + S S D T+KIW
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 237 TTRTWNLDN---LECVQTLKGHSDTVTSLLF--WDEYLFSSS-LDETIKIWLYTHTKNNA 290
T + WN +N LE QT +GH V + F D F+S LD T+K+W + N
Sbjct: 120 TVKLWNWENNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 291 ELSS-------LFGMLDAEAKPVLFSSGKDSAIRLYE 320
L++ KP + ++ D I++++
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 237 TTRTW--NLDNLECVQTLKGHSDTVTSLLFWD--EYLFSSSLDETIKIWLYTHTKNNAEL 292
TT W N D+ ECV TL+GH + V S+ + L + S D+++ +W ++ E
Sbjct: 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW-EVDEEDEYEC 142
Query: 293 SSLFGMLDAEAKPV--------LFSSGKDSAIRLY 319
S+ + K V L S+ D ++LY
Sbjct: 143 VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY 177
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 84 NSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVW---DRDSGRCVNVITNGAE 139
+ + L GH+ V +V N L + SRD V VW + D CV+V+ + +
Sbjct: 93 DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ 151
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 23/152 (15%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLDETIKIWLYTHTKNNAELSS 294
T R W++ E Q GH V S+ + + S S D+TIK+W T L++
Sbjct: 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW----TIKGQCLAT 143
Query: 295 LFGMLD--AEAKPV-----------LFSSGKDSAIRLYELPSFKLRARIFSRR-EVEVDQ 340
L G D ++ + V + S+G D ++ + L F++ A +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 341 IGPAG-LFFPGDASGSVGVWKWLLAEQQKMET 371
P G L G + +W LA ++ M T
Sbjct: 204 ASPDGTLIASAGKDGEIMLWN--LAAKKAMYT 233
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 88 TLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
T + GHK V +V + ++ + SGSRD + VW G+C+ +
Sbjct: 99 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATL 144
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--------YLFSSSLDETIKIWLYTHTKN 288
T + W + +C+ TL GH+D V+ + + S+ D+ +K W +
Sbjct: 130 TIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 289 NAEL----SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREV 336
A+ S++ + + ++ S+GKD I L+ L + K + ++ EV
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 23/152 (15%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLDETIKIWLYTHTKNNAELSS 294
T R W++ E Q GH V S+ + + S S D+TIK+W T L++
Sbjct: 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW----TIKGQCLAT 143
Query: 295 LFGMLD--AEAKPV-----------LFSSGKDSAIRLYELPSFKLRARIFSRR-EVEVDQ 340
L G D ++ + V + S+G D ++ + L F++ A +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 341 IGPAG-LFFPGDASGSVGVWKWLLAEQQKMET 371
P G L G + +W LA ++ M T
Sbjct: 204 ASPDGTLIASAGKDGEIMLWN--LAAKKAMYT 233
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 88 TLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
T + GHK V +V + ++ + SGSRD + VW G+C+ +
Sbjct: 99 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATL 144
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--------YLFSSSLDETIKIWLYTHTKN 288
T + W + +C+ TL GH+D V+ + + S+ D+ +K W +
Sbjct: 130 TIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 289 NAEL----SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREV 336
A+ S++ + + ++ S+GKD I L+ L + K + ++ EV
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWD--EYLFSSSLDETIKIW 281
T + W+ CV TL+GH V+ +F + S S D T+KIW
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 237 TTRTWNLDN---LECVQTLKGHSDTVTSLLF--WDEYLFSSS-LDETIKIWLYTHTKNNA 290
T + WN +N LE QT +GH V + F D F+S LD T+K+W + N
Sbjct: 120 TVKLWNWENNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 291 ELSS-------LFGMLDAEAKPVLFSSGKDSAIRLYE 320
L++ KP + ++ D I++++
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
>pdb|2RHK|C Chain C, Crystal Structure Of Influenza A Ns1a Protein In Complex
With F2f3 Fragment Of Human Cellular Factor Cpsf30,
Northeast Structural Genomics Targets Or8c And Hr6309a
pdb|2RHK|D Chain D, Crystal Structure Of Influenza A Ns1a Protein In Complex
With F2f3 Fragment Of Human Cellular Factor Cpsf30,
Northeast Structural Genomics Targets Or8c And Hr6309a
Length = 72
Score = 31.6 bits (70), Expect = 0.68, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 52 VCNNWISDSCVYGDKCRFLHSW 73
VC +W+ C GD+C FLH +
Sbjct: 18 VCKHWLRGLCKKGDQCEFLHEY 39
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 19/81 (23%)
Query: 251 TLKGHSDTVTSLLFWDEYLFSSSLDETIKIW-----LYTHTKNNAELSSLFGMLDAEAKP 305
TL GH V SL F D + S S D+T K+W +Y +NA + +AK
Sbjct: 99 TLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASV--------WDAKV 150
Query: 306 VLFSSGK------DSAIRLYE 320
V FS K D I+L++
Sbjct: 151 VSFSENKFLTASADKTIKLWQ 171
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 23/152 (15%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLDETIKIWLYTHTKNNAELSS 294
T R W++ E Q GH V S+ + + S S D+TIK+W T L++
Sbjct: 82 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW----TIKGQCLAT 137
Query: 295 LFGMLD--AEAKPV-----------LFSSGKDSAIRLYELPSFKLRARIFSRR-EVEVDQ 340
L G D ++ + V + S+G D ++ + L F++ A +
Sbjct: 138 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 197
Query: 341 IGPAG-LFFPGDASGSVGVWKWLLAEQQKMET 371
P G L G + +W LA ++ M T
Sbjct: 198 ASPDGTLIASAGKDGEIMLWN--LAAKKAMYT 227
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 88 TLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
T + GHK V +V + ++ + SGSRD + VW G+C+ +
Sbjct: 93 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATL 138
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--------YLFSSSLDETIKIWLYTHTKN 288
T + W + +C+ TL GH+D V+ + + S+ D+ +K W +
Sbjct: 124 TIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 182
Query: 289 NAEL----SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREV 336
A+ S++ + + ++ S+GKD I L+ L + K + ++ EV
Sbjct: 183 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 234
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWD--EYLFSSSLDETIKIW 281
T + W+ CV TL+GH V+ +F + S S D T+KIW
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 237 TTRTWNLDN---LECVQTLKGHSDTVTSLLF--WDEYLFSSS-LDETIKIWLYTHTKNNA 290
T + WN +N LE QT +GH V + F D F+S LD T+K+W + N
Sbjct: 120 TVKLWNWENNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 291 ELSS-------LFGMLDAEAKPVLFSSGKDSAIRLYE 320
L++ KP + ++ D I++++
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWD--EYLFSSSLDETIKIW 281
T + W+ CV TL+GH V+ +F + S S D T+KIW
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 237 TTRTWNLDN---LECVQTLKGHSDTVTSLLF--WDEYLFSSS-LDETIKIWLYTHTKNNA 290
T + WN +N LE QT +GH V + F D F+S LD T+K+W + N
Sbjct: 120 TVKLWNWENNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 291 ELSS-------LFGMLDAEAKPVLFSSGKDSAIRLYE 320
L++ KP + ++ D I++++
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 235 GHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLDETIKIW-LYTHTKNNAE 291
G T ++N +L C +TL+GHS V SL + E ++ S+S D + +W T K +A
Sbjct: 45 GRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI 104
Query: 292 LSSLFGMLDAEAKP---VLFSSGKDSAIRLYELPS 323
+++ P + G DSA ++ L S
Sbjct: 105 KLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSS 139
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLDETIKIW------LYTHTKN 288
T R W++ E Q GH V S+ + + S S D+TIK+W L T +
Sbjct: 88 TLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGH 147
Query: 289 NAELSSLFGMLDAEAKP---VLFSSGKDSAIRLYELPSFKLRA 328
N +S + + + +A + S+G D ++ + L F++ A
Sbjct: 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEA 190
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 88 TLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI 134
T + GHK V +V + ++ + SGSRD + VW G+C+ +
Sbjct: 99 TYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTI-KGQCLATL 144
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWDE--------YLFSSSLDETIKIWLYTHTKN 288
T + W + +C+ TL GH+D V+ + + S+ D+ +K W +
Sbjct: 130 TIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQI 188
Query: 289 NAEL----SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREV 336
A+ S++ + + ++ S+GKD I L+ L + K + ++ EV
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEV 240
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 93/250 (37%), Gaps = 29/250 (11%)
Query: 92 LNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVF 151
L GH+ VT++ + + S S DG + +W+ +G ++ N E +F
Sbjct: 174 LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF-NRKENPHDGVNSIALF 232
Query: 152 LGLPNAVKSWRXXXXXXXXXXXXXXXXXXGSEGGVISVWKGTFVANPFKQVASIRAPLWF 211
+G + G GVI+V N F + +I+ P F
Sbjct: 233 VGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVH------NVFSKEQTIQLPSKF 286
Query: 212 -CSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECV--QTLKGHSDTVTSLLFWDEY 268
CS +S N+ A +E W+L + EC + L + ++ F
Sbjct: 287 TCSCNSLTVDGNNANYIYAGYE--NGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGA 344
Query: 269 LF-SSSLDETIKIWLYTHTK----------------NNAELSSLFGMLDAEAKPVLFSSG 311
LF SS D +IK+ + + + N+ E+S + D E+ + G
Sbjct: 345 LFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDEVSQFCYVSDDESNGEVLEVG 404
Query: 312 KDSAIRLYEL 321
K++ LY L
Sbjct: 405 KNNFCALYNL 414
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 239 RTWNLDNLECVQTLKGHSDTVTSLLFWD--EYLFSSSLDETIKIW 281
+ W++ + +TL GH TVT + D + S+SLD TI++W
Sbjct: 161 KIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 205
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 13/108 (12%)
Query: 253 KGHSDTVTSLLFWD--EYLFSSSLDETIKIWLYTHTKNNAELSSLFGMLDAEAKPVLFSS 310
+ H +T L F+ E L SSS D +KIW K+ + +L G +
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIW---SVKDGSNPRTLIGHRATVTDIAIIDR 189
Query: 311 GK-------DSAIRLYELPSFKLRARIFSRREVEVDQIGPAGLFFPGD 351
G+ D IRL+E + F+R+E D + LF D
Sbjct: 190 GRNVLSASLDGTIRLWECGT-GTTIHTFNRKENPHDGVNSIALFVGTD 236
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 15/144 (10%)
Query: 239 RTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIW------LYTHT---K 287
R W+L + GH+ V S+ F + + S+S D TIK+W YT + +
Sbjct: 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGE 514
Query: 288 NNAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRR-EVEVDQIGPAG- 345
+ + S +P + S+ D ++++ L + KLR+ + V + P G
Sbjct: 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS 574
Query: 346 LFFPGDASGSVGVWKWLLAEQQKM 369
L G G V +W LAE +K+
Sbjct: 575 LCASGGKDGVVLLWD--LAEGKKL 596
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 13/102 (12%)
Query: 236 HTTRTWNLDNLECVQTL----KGHSDTVTSLLF----WDEYLFSSSLDETIKIWLYTHTK 287
T + WN EC T+ +GH D V+ + F + S+S D+T+K+W ++ K
Sbjct: 494 RTIKLWNTLG-ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552
Query: 288 NNAELSSLFGMLDAEA----KPVLFSSGKDSAIRLYELPSFK 325
+ L+ G + A + S GKD + L++L K
Sbjct: 553 LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK 594
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 94 GHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAE 139
GH K V +V + ++ S SRD + +W+ G C I+ G E
Sbjct: 470 GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT-LGECKYTISEGGE 514
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 25/125 (20%)
Query: 209 LWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLF---W 265
+WFCSL S +R + G+ N+D E + L+ H VT +
Sbjct: 211 IWFCSLDVSASSRM-----VVTGDNVGNVI-LLNMDGKE-LWNLRMHKKKVTHVALNPCC 263
Query: 266 DEYLFSSSLDETIKIWLYTHTKNNAELSSLFGMLDAEAKPV-----------LFSSGKDS 314
D +L ++S+D+T+KIW + A S L+ + PV L ++ + S
Sbjct: 264 DWFLATASVDQTVKIWDLRQVRGKA--SFLYSL--PHRHPVNAACFSPDGARLLTTDQKS 319
Query: 315 AIRLY 319
IR+Y
Sbjct: 320 EIRVY 324
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 239 RTWNLDNLECVQTLKGHSDTVTSLLFWD--EYLFSSSLDETIKIW 281
+ W++ + +TL GH TVT + D + S+SLD TI++W
Sbjct: 164 KIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 73/193 (37%), Gaps = 13/193 (6%)
Query: 92 LNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVF 151
L GH+ VT++ + + S S DG + +W+ +G ++ N E +F
Sbjct: 177 LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF-NRKENPHDGVNSIALF 235
Query: 152 LGLPNAVKSWRXXXXXXXXXXXXXXXXXXGSEGGVISVWKGTFVANPFKQVASIRAPLWF 211
+G + G GVI+V N F + +I+ P F
Sbjct: 236 VGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVH------NVFSKEQTIQLPSKF 289
Query: 212 -CSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECV--QTLKGHSDTVTSLLFWDEY 268
CS +S N+ A +E W+L + EC + L + ++ F
Sbjct: 290 TCSCNSLTVDGNNANYIYAGYE--NGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGA 347
Query: 269 LF-SSSLDETIKI 280
LF SS D +IK+
Sbjct: 348 LFVSSGFDTSIKL 360
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 13/108 (12%)
Query: 253 KGHSDTVTSLLFWD--EYLFSSSLDETIKIWLYTHTKNNAELSSLFGMLDAEAKPVLFSS 310
+ H +T L F+ E L SSS D +KIW K+ + +L G +
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIW---SVKDGSNPRTLIGHRATVTDIAIIDR 192
Query: 311 GK-------DSAIRLYELPSFKLRARIFSRREVEVDQIGPAGLFFPGD 351
G+ D IRL+E + F+R+E D + LF D
Sbjct: 193 GRNVLSASLDGTIRLWECGT-GTTIHTFNRKENPHDGVNSIALFVGTD 239
>pdb|2D9N|A Chain A, Solution Structure Of Ccch Type Zinc-Finger Domain 2 In
Cleavage And Polyadenylation Specificity Factor
Length = 77
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 44 GLAAMAIRVCNNWISDSCVYGDKCRFLHSW 73
G + VC +W+ C GD+C FLH +
Sbjct: 4 GSSGEKTVVCKHWLRGLCKKGDQCEFLHEY 33
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 25/125 (20%)
Query: 209 LWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLF---W 265
+WFCSL S +R + G+ N+D E + L+ H VT +
Sbjct: 210 IWFCSLDVSASSRM-----VVTGDNVGNVI-LLNMDGKE-LWNLRMHKKKVTHVALNPCC 262
Query: 266 DEYLFSSSLDETIKIWLYTHTKNNAELSSLFGMLDAEAKPV-----------LFSSGKDS 314
D +L ++S+D+T+KIW + A S L+ + PV L ++ + S
Sbjct: 263 DWFLATASVDQTVKIWDLRQVRGKA--SFLYSL--PHRHPVNAACFSPDGARLLTTDQKS 318
Query: 315 AIRLY 319
IR+Y
Sbjct: 319 EIRVY 323
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 76/209 (36%), Gaps = 37/209 (17%)
Query: 85 SLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLI 144
+L ++ HKKA+ +V ++ L +GS D VS+W ++ E+ L
Sbjct: 47 TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESA-----DRTFEMDLLA 101
Query: 145 SEGSWVFLGLPNAVKSWRXXXXXXXXXXXXXXXXXXGSEGGVISVWKGTFVANPFKQVAS 204
+ G N VK S + +W+ ++ ++
Sbjct: 102 -----IIEGHENEVKG--------VAWSNDGYYLATCSRDKSVWIWETDESGEEYECISV 148
Query: 205 IRAPLWFCSLSSSNDTR---WNSKEEAAVFEFCGHTTRTWNL--DNLECVQTLKGHSDTV 259
++ S D + W+ E T R W D+ ECV L GH TV
Sbjct: 149 LQ--------EHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTV 200
Query: 260 TSLLFWDE-----YLFSSSLDETIKIWLY 283
S F D+ L S S D T+++W Y
Sbjct: 201 WSSDF-DKTEGVFRLCSGSDDSTVRVWKY 228
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 25/125 (20%)
Query: 209 LWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLF---W 265
+WFCSL S +R + G+ N+D E + L+ H VT +
Sbjct: 210 IWFCSLDVSASSRM-----VVTGDNVGNVI-LLNMDGKE-LWNLRMHKKKVTHVALNPCC 262
Query: 266 DEYLFSSSLDETIKIWLYTHTKNNAELSSLFGMLDAEAKPV-----------LFSSGKDS 314
D +L ++S+D+T+KIW + A S L+ + PV L ++ + S
Sbjct: 263 DWFLATASVDQTVKIWDLRQVRGKA--SFLYSL--PHRHPVNAACFSPDGARLLTTDQKS 318
Query: 315 AIRLY 319
IR+Y
Sbjct: 319 EIRVY 323
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 90 MKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVW 123
+KL GH++ +T V + L+S S+D SVW
Sbjct: 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVW 59
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 11/104 (10%)
Query: 181 GSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGH-TTR 239
G E +S+W K + AP + +L+ S D++ F C
Sbjct: 115 GGEASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDSK-------VCFSCCSDGNIA 166
Query: 240 TWNLDNLECVQTLKGHSDTVTSLLFWDE--YLFSSSLDETIKIW 281
W+L N V+ +GH+D + + ++ L++ LD T++ W
Sbjct: 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 63 YGDKCRFLHS--WVHSVDGDNT-----TNSLATLMKLNGHKKAVTNVGL-PSGS-NKLYS 113
Y C F +S + + GD T S L +GH V + L PS + N S
Sbjct: 156 YLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS 215
Query: 114 GSRDGRVSVWDRDSGRCVNVI 134
G D + VWD SG+CV
Sbjct: 216 GGCDKKAMVWDMRSGQCVQAF 236
>pdb|1TZ9|A Chain A, Crystal Structure Of The Putative Mannonate Dehydratase
From Enterococcus Faecalis, Northeast Structural
Genomics Target Efr41
pdb|1TZ9|B Chain B, Crystal Structure Of The Putative Mannonate Dehydratase
From Enterococcus Faecalis, Northeast Structural
Genomics Target Efr41
Length = 367
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 18/101 (17%)
Query: 241 WNLDNLECVQTLKG------HSDTVTSLLFWDEYLFSSSLDETIKIWLYTH--------- 285
W + L+ Q LK D V +L ++ E + +E IK ++
Sbjct: 169 WEEERLQQFQELKAXYAGVTEEDLVENLRYFLERVIPVCEEENIKXGIHPDDPPWEIFGL 228
Query: 286 ---TKNNAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPS 323
TKN A+L + ++D+ A + F +G A +LP+
Sbjct: 229 PRITKNLADLKRILSLVDSPANGITFCTGSLGADPTNDLPT 269
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 82 TTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVW 123
T S + L GH K V S +LYSGSRD + W
Sbjct: 320 TVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVW 123
L ++GH K +T + + N L SGS DGR+ W
Sbjct: 332 LKTISGHNKGITALTV----NPLISGSYDGRIXEW 362
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDS 127
L ++GH K +T + + N L SGS DGR+ W S
Sbjct: 332 LKTISGHNKGITALTV----NPLISGSYDGRIMEWSSSS 366
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 80 DNTTNSLATLMKLNGH-KKAVTNVGLPS--GSNKLYSGSRDGRVSVW----DRDSGRC-V 131
D+ + + +++ GH VT V GS L SG G+V VW D++S V
Sbjct: 47 DDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEV 106
Query: 132 NVITNGAEIGCLISEGSWVFLG 153
NV + + IS+ SW F G
Sbjct: 107 NVKSEFQVLAGPISDISWDFEG 128
>pdb|3GRK|A Chain A, Crystal Structure Of Short Chain Dehydrogenase Reductase
Sdr Glucose-Ribitol Dehydrogenase From Brucella
Melitensis
pdb|3GRK|B Chain B, Crystal Structure Of Short Chain Dehydrogenase Reductase
Sdr Glucose-Ribitol Dehydrogenase From Brucella
Melitensis
pdb|3GRK|C Chain C, Crystal Structure Of Short Chain Dehydrogenase Reductase
Sdr Glucose-Ribitol Dehydrogenase From Brucella
Melitensis
pdb|3GRK|D Chain D, Crystal Structure Of Short Chain Dehydrogenase Reductase
Sdr Glucose-Ribitol Dehydrogenase From Brucella
Melitensis
pdb|3GRK|E Chain E, Crystal Structure Of Short Chain Dehydrogenase Reductase
Sdr Glucose-Ribitol Dehydrogenase From Brucella
Melitensis
pdb|3GRK|F Chain F, Crystal Structure Of Short Chain Dehydrogenase Reductase
Sdr Glucose-Ribitol Dehydrogenase From Brucella
Melitensis
pdb|3GRK|G Chain G, Crystal Structure Of Short Chain Dehydrogenase Reductase
Sdr Glucose-Ribitol Dehydrogenase From Brucella
Melitensis
pdb|3GRK|H Chain H, Crystal Structure Of Short Chain Dehydrogenase Reductase
Sdr Glucose-Ribitol Dehydrogenase From Brucella
Melitensis
Length = 293
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 333 RREVEVDQIGPAGLFFPGDASGSV 356
RR V +D++G GL+F D S SV
Sbjct: 241 RRTVTIDEVGDVGLYFLSDLSRSV 264
>pdb|3IF8|A Chain A, Crystal Structure Of Zwilch, A Member Of The Rzz
Kinetochore
Length = 339
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 242 NLDNLECVQTLKGHSDTVTSLLFWDEYLF-SSSLDETI 278
NL+NL+ + + H TVTS F LF SS+LD+TI
Sbjct: 186 NLENLKNLHKKRHHLSTVTSKGFAQYELFKSSALDDTI 223
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,411,968
Number of Sequences: 62578
Number of extensions: 454275
Number of successful extensions: 1632
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1130
Number of HSP's gapped (non-prelim): 456
length of query: 371
length of database: 14,973,337
effective HSP length: 100
effective length of query: 271
effective length of database: 8,715,537
effective search space: 2361910527
effective search space used: 2361910527
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)