Query 041206
Match_columns 371
No_of_seqs 608 out of 2728
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 04:49:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041206.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041206hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 3.7E-46 8.1E-51 303.2 26.7 306 13-360 121-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 3E-45 6.5E-50 297.9 25.7 286 32-367 105-444 (480)
3 KOG0286 G-protein beta subunit 100.0 1.1E-40 2.3E-45 262.5 31.1 264 86-360 45-343 (343)
4 KOG0272 U4/U6 small nuclear ri 100.0 4.3E-42 9.2E-47 282.8 21.2 271 40-360 173-458 (459)
5 KOG0279 G protein beta subunit 100.0 4.5E-39 9.7E-44 251.8 31.4 285 32-362 5-313 (315)
6 KOG0272 U4/U6 small nuclear ri 100.0 7E-40 1.5E-44 269.8 19.0 259 14-320 182-458 (459)
7 KOG0319 WD40-repeat-containing 100.0 2E-37 4.3E-42 271.7 27.9 336 13-364 111-621 (775)
8 KOG0291 WD40-repeat-containing 100.0 1.6E-35 3.5E-40 260.3 37.4 333 14-364 62-510 (893)
9 KOG0291 WD40-repeat-containing 100.0 4.8E-36 1E-40 263.6 34.0 305 15-368 273-618 (893)
10 KOG0318 WD40 repeat stress pro 100.0 3E-35 6.5E-40 248.8 36.7 311 32-364 137-562 (603)
11 KOG0645 WD40 repeat protein [G 100.0 8.5E-35 1.8E-39 227.0 32.9 285 32-362 4-311 (312)
12 KOG0265 U5 snRNP-specific prot 100.0 5.1E-36 1.1E-40 237.0 26.1 279 33-360 38-336 (338)
13 KOG0285 Pleiotropic regulator 100.0 1E-35 2.2E-40 240.6 25.1 281 31-363 140-440 (460)
14 KOG0285 Pleiotropic regulator 100.0 2.8E-36 6E-41 243.9 21.7 243 84-365 139-392 (460)
15 KOG0295 WD40 repeat-containing 100.0 3E-36 6.6E-41 244.0 21.8 283 29-361 95-405 (406)
16 KOG0273 Beta-transducin family 100.0 7.2E-35 1.6E-39 243.4 29.5 289 38-368 174-488 (524)
17 KOG0315 G-protein beta subunit 100.0 1.5E-34 3.3E-39 222.9 27.4 274 18-341 9-308 (311)
18 KOG0318 WD40 repeat stress pro 100.0 2.7E-33 5.9E-38 237.0 37.0 330 21-362 162-602 (603)
19 KOG0279 G protein beta subunit 100.0 3.9E-34 8.6E-39 224.2 29.5 243 85-367 4-267 (315)
20 KOG0315 G-protein beta subunit 100.0 4.5E-34 9.8E-39 220.4 29.2 263 61-368 13-294 (311)
21 KOG0281 Beta-TrCP (transducin 100.0 1.3E-35 2.7E-40 239.4 17.6 272 40-366 195-481 (499)
22 KOG0282 mRNA splicing factor [ 100.0 1.3E-35 2.9E-40 248.6 18.2 281 31-360 203-503 (503)
23 KOG0284 Polyadenylation factor 100.0 1.1E-35 2.3E-40 244.2 16.7 268 42-362 96-380 (464)
24 KOG0273 Beta-transducin family 100.0 1E-33 2.2E-38 236.6 28.1 270 42-362 235-523 (524)
25 KOG0319 WD40-repeat-containing 100.0 9E-34 1.9E-38 248.8 27.5 338 13-369 68-542 (775)
26 KOG0263 Transcription initiati 100.0 2.5E-33 5.5E-38 248.1 28.8 250 32-323 368-650 (707)
27 KOG0276 Vesicle coat complex C 100.0 1.1E-33 2.5E-38 243.9 25.6 277 33-358 4-295 (794)
28 KOG0296 Angio-associated migra 100.0 1.9E-32 4.1E-37 222.2 29.9 306 33-362 55-398 (399)
29 KOG0266 WD40 repeat-containing 100.0 9.6E-33 2.1E-37 249.4 31.6 278 35-362 151-454 (456)
30 KOG0306 WD40-repeat-containing 100.0 5.7E-32 1.2E-36 238.0 33.0 331 16-365 74-667 (888)
31 KOG0263 Transcription initiati 100.0 1.2E-33 2.5E-38 250.2 22.0 264 89-364 371-651 (707)
32 KOG0292 Vesicle coat complex C 100.0 3.3E-33 7.1E-38 249.7 24.9 281 36-366 3-325 (1202)
33 KOG0293 WD40 repeat-containing 100.0 8.6E-33 1.9E-37 227.5 24.2 282 35-364 217-515 (519)
34 KOG0295 WD40 repeat-containing 100.0 2.1E-33 4.6E-38 227.6 20.0 249 84-369 96-371 (406)
35 cd00200 WD40 WD40 domain, foun 100.0 2.2E-31 4.7E-36 228.1 33.8 275 36-360 3-289 (289)
36 KOG0278 Serine/threonine kinas 100.0 8.1E-34 1.8E-38 219.2 15.3 280 36-366 8-301 (334)
37 KOG0316 Conserved WD40 repeat- 100.0 3.4E-32 7.4E-37 208.4 22.8 242 87-366 8-261 (307)
38 KOG0286 G-protein beta subunit 100.0 5.6E-31 1.2E-35 207.8 29.7 265 33-320 46-343 (343)
39 KOG0316 Conserved WD40 repeat- 100.0 2E-31 4.3E-36 204.3 25.9 273 35-360 10-297 (307)
40 KOG0284 Polyadenylation factor 100.0 7.6E-34 1.6E-38 233.3 13.2 258 14-322 103-380 (464)
41 KOG0274 Cdc4 and related F-box 100.0 1.7E-31 3.6E-36 240.8 29.5 264 57-368 217-488 (537)
42 PLN00181 protein SPA1-RELATED; 100.0 1.2E-30 2.6E-35 252.7 37.0 281 38-361 479-792 (793)
43 KOG0281 Beta-TrCP (transducin 100.0 9.7E-34 2.1E-38 228.5 12.4 227 95-365 196-431 (499)
44 KOG0296 Angio-associated migra 100.0 1E-30 2.2E-35 212.2 26.2 271 87-368 55-362 (399)
45 KOG0645 WD40 repeat protein [G 100.0 4E-30 8.6E-35 201.0 27.4 239 86-363 4-262 (312)
46 KOG0276 Vesicle coat complex C 100.0 3E-31 6.5E-36 229.1 23.1 242 88-367 5-262 (794)
47 KOG0266 WD40 repeat-containing 100.0 2.9E-30 6.4E-35 233.3 30.0 241 88-365 150-412 (456)
48 KOG0265 U5 snRNP-specific prot 100.0 4.4E-31 9.5E-36 209.1 21.2 243 86-367 37-301 (338)
49 KOG0282 mRNA splicing factor [ 100.0 3E-32 6.4E-37 228.6 15.2 245 85-367 203-467 (503)
50 KOG0313 Microtubule binding pr 100.0 2.3E-30 5E-35 211.1 24.5 276 41-362 104-418 (423)
51 KOG0306 WD40-repeat-containing 100.0 2.2E-29 4.8E-34 221.8 30.4 333 17-368 32-586 (888)
52 cd00200 WD40 WD40 domain, foun 100.0 4.3E-29 9.4E-34 213.9 31.6 240 89-366 2-253 (289)
53 KOG0300 WD40 repeat-containing 100.0 5.3E-30 1.1E-34 204.8 21.6 312 31-365 137-479 (481)
54 KOG0305 Anaphase promoting com 100.0 2.4E-29 5.3E-34 218.9 26.9 255 65-364 194-463 (484)
55 KOG0643 Translation initiation 100.0 6E-30 1.3E-34 199.6 20.6 281 37-364 5-319 (327)
56 PTZ00420 coronin; Provisional 100.0 1.9E-28 4E-33 221.9 32.6 244 63-345 49-318 (568)
57 KOG0313 Microtubule binding pr 100.0 5.2E-30 1.1E-34 209.1 19.7 277 51-365 55-379 (423)
58 PLN00181 protein SPA1-RELATED; 100.0 1.6E-28 3.5E-33 237.9 33.5 240 92-364 479-740 (793)
59 KOG0283 WD40 repeat-containing 100.0 8.5E-30 1.8E-34 227.6 22.5 265 87-364 257-578 (712)
60 KOG0275 Conserved WD40 repeat- 100.0 1.5E-30 3.2E-35 208.5 14.1 275 43-360 214-507 (508)
61 KOG0275 Conserved WD40 repeat- 100.0 7.2E-30 1.6E-34 204.6 17.6 245 94-369 211-474 (508)
62 KOG0292 Vesicle coat complex C 100.0 1.2E-29 2.6E-34 227.2 20.7 239 91-367 4-285 (1202)
63 KOG0274 Cdc4 and related F-box 100.0 7.8E-29 1.7E-33 223.6 25.5 250 29-332 235-492 (537)
64 KOG0772 Uncharacterized conser 100.0 1.5E-28 3.2E-33 208.0 24.4 267 87-360 158-485 (641)
65 KOG0277 Peroxisomal targeting 100.0 6.7E-29 1.5E-33 192.4 20.1 240 84-361 49-308 (311)
66 PTZ00421 coronin; Provisional 100.0 2.6E-27 5.7E-32 213.4 32.6 225 90-345 69-315 (493)
67 KOG0301 Phospholipase A2-activ 100.0 3E-28 6.5E-33 212.9 24.9 280 31-365 3-291 (745)
68 KOG0268 Sof1-like rRNA process 100.0 2.1E-29 4.7E-34 204.4 16.4 272 31-327 55-350 (433)
69 KOG0299 U3 snoRNP-associated p 100.0 1E-27 2.2E-32 200.3 25.2 285 35-361 135-455 (479)
70 KOG0288 WD40 repeat protein Ti 100.0 2.6E-29 5.6E-34 207.1 15.4 279 32-360 165-459 (459)
71 KOG1408 WD40 repeat protein [F 100.0 6.6E-28 1.4E-32 211.6 24.0 189 167-366 461-717 (1080)
72 KOG0277 Peroxisomal targeting 100.0 5.8E-28 1.3E-32 187.3 21.0 233 41-321 59-308 (311)
73 KOG0293 WD40 repeat-containing 100.0 2.1E-28 4.7E-33 201.8 19.8 250 13-286 230-515 (519)
74 KOG0268 Sof1-like rRNA process 100.0 9.4E-29 2E-33 200.7 16.9 264 87-364 57-347 (433)
75 KOG0289 mRNA splicing factor [ 100.0 3.2E-27 7E-32 196.0 26.2 268 44-361 221-505 (506)
76 KOG0294 WD40 repeat-containing 100.0 3.3E-27 7.2E-32 188.5 25.2 258 64-364 7-283 (362)
77 KOG1407 WD40 repeat protein [F 100.0 5E-27 1.1E-31 182.8 24.4 278 36-362 14-311 (313)
78 KOG0310 Conserved WD40 repeat- 100.0 4.4E-27 9.6E-32 197.9 24.3 270 41-362 25-309 (487)
79 KOG0640 mRNA cleavage stimulat 100.0 1.1E-27 2.5E-32 190.8 19.0 286 36-362 106-426 (430)
80 KOG1408 WD40 repeat protein [F 100.0 1.1E-26 2.3E-31 204.1 25.2 186 177-369 394-678 (1080)
81 KOG0300 WD40 repeat-containing 100.0 3.2E-27 6.9E-32 188.9 19.9 249 85-368 137-434 (481)
82 KOG0643 Translation initiation 100.0 3.4E-26 7.3E-31 178.8 24.8 228 91-352 5-251 (327)
83 PTZ00421 coronin; Provisional 100.0 7E-26 1.5E-30 204.2 30.4 251 95-367 19-295 (493)
84 KOG0283 WD40 repeat-containing 100.0 9.5E-27 2.1E-31 208.2 24.2 247 32-323 256-577 (712)
85 KOG1446 Histone H3 (Lys4) meth 100.0 1.5E-25 3.3E-30 179.3 28.5 241 86-366 4-266 (311)
86 KOG2096 WD40 repeat protein [G 100.0 2.8E-26 6E-31 183.5 24.2 257 89-360 79-400 (420)
87 KOG1446 Histone H3 (Lys4) meth 100.0 2.5E-25 5.4E-30 178.1 27.9 250 13-284 20-303 (311)
88 KOG1036 Mitotic spindle checkp 100.0 7.5E-26 1.6E-30 180.3 24.1 233 95-368 12-268 (323)
89 KOG0299 U3 snoRNP-associated p 100.0 1.2E-26 2.6E-31 193.9 19.7 254 89-364 135-412 (479)
90 KOG0973 Histone transcription 100.0 6.5E-26 1.4E-30 208.0 25.0 297 14-367 20-360 (942)
91 KOG0288 WD40 repeat protein Ti 100.0 1.7E-27 3.7E-32 196.4 13.3 244 87-369 166-424 (459)
92 KOG1539 WD repeat protein [Gen 99.9 7.5E-25 1.6E-29 195.5 30.6 321 28-367 188-611 (910)
93 KOG0278 Serine/threonine kinas 99.9 6.1E-27 1.3E-31 181.2 15.2 262 14-327 24-302 (334)
94 KOG1407 WD40 repeat protein [F 99.9 8E-26 1.7E-30 176.1 21.4 242 90-368 14-267 (313)
95 KOG0641 WD40 repeat protein [G 99.9 1.7E-24 3.8E-29 165.5 28.1 260 84-364 21-305 (350)
96 KOG0640 mRNA cleavage stimulat 99.9 2.8E-26 6.1E-31 182.9 18.9 257 88-365 104-386 (430)
97 KOG0264 Nucleosome remodeling 99.9 4.2E-26 9.2E-31 190.6 20.6 246 94-363 122-405 (422)
98 KOG2106 Uncharacterized conser 99.9 3.1E-24 6.6E-29 181.6 31.2 311 34-365 96-480 (626)
99 KOG0308 Conserved WD40 repeat- 99.9 9.2E-26 2E-30 196.2 19.6 292 61-365 40-396 (735)
100 KOG0310 Conserved WD40 repeat- 99.9 1.4E-25 2.9E-30 189.0 19.7 230 96-365 26-271 (487)
101 KOG0641 WD40 repeat protein [G 99.9 9.4E-23 2E-27 156.0 32.9 286 40-362 30-349 (350)
102 PTZ00420 coronin; Provisional 99.9 7.2E-24 1.6E-28 192.2 31.7 217 114-365 50-296 (568)
103 KOG0647 mRNA export protein (c 99.9 1.4E-24 3E-29 172.6 23.0 236 93-368 24-287 (347)
104 KOG0289 mRNA splicing factor [ 99.9 1.6E-24 3.6E-29 180.0 23.1 254 20-321 232-505 (506)
105 KOG0639 Transducin-like enhanc 99.9 3.1E-25 6.8E-30 187.5 19.0 273 40-361 417-703 (705)
106 KOG0646 WD40 repeat protein [G 99.9 1E-24 2.2E-29 182.8 21.8 245 114-369 13-314 (476)
107 KOG0301 Phospholipase A2-activ 99.9 8.4E-25 1.8E-29 191.5 21.7 239 85-362 3-249 (745)
108 KOG4283 Transcription-coupled 99.9 1.8E-23 3.9E-28 165.9 24.5 280 38-362 39-365 (397)
109 KOG1063 RNA polymerase II elon 99.9 4.5E-23 9.7E-28 180.8 28.9 326 31-364 180-650 (764)
110 KOG1332 Vesicle coat complex C 99.9 2.8E-24 6E-29 166.0 18.5 243 39-323 8-287 (299)
111 KOG0264 Nucleosome remodeling 99.9 4.3E-24 9.4E-29 178.6 21.1 254 38-323 120-405 (422)
112 KOG0647 mRNA export protein (c 99.9 3.6E-23 7.9E-28 164.6 25.3 265 39-353 24-315 (347)
113 KOG2055 WD40 repeat protein [G 99.9 2.8E-23 6.2E-28 174.0 25.9 302 15-362 179-512 (514)
114 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3E-22 6.4E-27 173.4 33.0 256 63-367 6-284 (300)
115 KOG1036 Mitotic spindle checkp 99.9 7E-23 1.5E-27 163.5 25.8 260 40-351 11-293 (323)
116 KOG0308 Conserved WD40 repeat- 99.9 2.7E-24 5.8E-29 187.2 18.9 263 94-363 19-328 (735)
117 KOG1274 WD40 repeat protein [G 99.9 3.3E-23 7.1E-28 187.0 26.4 233 93-363 10-263 (933)
118 KOG1332 Vesicle coat complex C 99.9 6.2E-24 1.3E-28 164.1 17.9 237 91-363 6-287 (299)
119 KOG1539 WD repeat protein [Gen 99.9 9.5E-23 2.1E-27 182.2 27.2 329 14-362 251-648 (910)
120 KOG0294 WD40 repeat-containing 99.9 8.4E-23 1.8E-27 163.5 23.6 257 31-342 32-306 (362)
121 KOG2445 Nuclear pore complex c 99.9 3.9E-22 8.4E-27 159.2 25.1 239 93-362 10-318 (361)
122 KOG2048 WD40 repeat protein [G 99.9 5.5E-21 1.2E-25 167.5 34.5 226 38-282 21-273 (691)
123 KOG0269 WD40 repeat-containing 99.9 2.5E-24 5.4E-29 190.8 13.6 226 98-361 89-339 (839)
124 KOG0305 Anaphase promoting com 99.9 3.7E-23 8.1E-28 180.5 18.8 224 14-286 224-463 (484)
125 KOG2106 Uncharacterized conser 99.9 1.1E-21 2.5E-26 166.2 27.0 270 88-367 96-441 (626)
126 KOG0650 WD40 repeat nucleolar 99.9 3.5E-22 7.6E-27 172.6 24.2 261 87-359 391-732 (733)
127 KOG0973 Histone transcription 99.9 2.9E-22 6.2E-27 184.3 23.4 248 95-367 12-317 (942)
128 KOG0270 WD40 repeat-containing 99.9 8.8E-23 1.9E-27 170.3 18.3 200 93-329 240-456 (463)
129 KOG4328 WD40 protein [Function 99.9 4E-22 8.7E-27 167.0 22.1 292 29-362 173-495 (498)
130 KOG2048 WD40 repeat protein [G 99.9 3.6E-21 7.9E-26 168.6 26.9 234 95-365 24-278 (691)
131 KOG0772 Uncharacterized conser 99.9 1.1E-21 2.3E-26 166.8 22.2 275 32-322 157-487 (641)
132 KOG0302 Ribosome Assembly prot 99.9 6.5E-22 1.4E-26 162.0 19.8 249 87-355 142-432 (440)
133 KOG0639 Transducin-like enhanc 99.9 1.6E-22 3.5E-27 171.3 16.5 242 87-364 411-665 (705)
134 KOG4328 WD40 protein [Function 99.9 7.8E-22 1.7E-26 165.3 19.6 250 83-365 173-453 (498)
135 KOG0646 WD40 repeat protein [G 99.9 6.2E-22 1.4E-26 166.2 18.7 206 42-288 81-311 (476)
136 KOG0321 WD40 repeat-containing 99.9 1.5E-21 3.2E-26 169.9 21.3 266 64-364 70-393 (720)
137 KOG1273 WD40 repeat protein [G 99.9 6.3E-21 1.4E-25 152.8 22.4 268 45-363 26-323 (405)
138 KOG0269 WD40 repeat-containing 99.9 5.5E-22 1.2E-26 176.1 17.2 240 95-365 38-299 (839)
139 KOG0267 Microtubule severing p 99.9 4E-23 8.7E-28 181.9 9.8 226 90-353 22-259 (825)
140 KOG4283 Transcription-coupled 99.9 9E-21 1.9E-25 150.7 21.9 212 92-326 39-280 (397)
141 KOG0267 Microtubule severing p 99.9 1.1E-22 2.5E-27 179.1 11.2 226 39-314 25-260 (825)
142 KOG0302 Ribosome Assembly prot 99.9 1E-20 2.2E-25 155.1 18.5 221 32-287 141-381 (440)
143 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.1E-18 4.6E-23 149.3 33.5 263 29-343 18-300 (300)
144 KOG1063 RNA polymerase II elon 99.9 2.9E-19 6.3E-24 157.1 27.9 281 65-362 31-391 (764)
145 KOG0270 WD40 repeat-containing 99.9 1.4E-20 2.9E-25 157.4 17.4 239 107-366 191-453 (463)
146 KOG1034 Transcriptional repres 99.9 7.1E-20 1.5E-24 147.6 19.7 282 38-362 34-383 (385)
147 KOG4378 Nuclear protein COP1 [ 99.9 3.7E-20 8E-25 156.9 18.6 256 43-345 35-305 (673)
148 KOG1445 Tumor-specific antigen 99.9 3.1E-19 6.7E-24 155.7 24.5 191 167-364 629-846 (1012)
149 KOG0322 G-protein beta subunit 99.9 1.5E-20 3.2E-25 147.2 14.5 268 86-361 4-322 (323)
150 KOG0307 Vesicle coat complex C 99.9 8.3E-21 1.8E-25 175.7 14.6 245 87-365 56-330 (1049)
151 KOG2445 Nuclear pore complex c 99.9 9.2E-19 2E-23 140.1 24.2 234 39-288 10-322 (361)
152 KOG0649 WD40 repeat protein [G 99.9 3.4E-18 7.3E-23 132.6 26.5 250 97-360 11-314 (325)
153 KOG2919 Guanine nucleotide-bin 99.8 1.6E-18 3.5E-23 139.6 24.2 247 99-353 52-361 (406)
154 KOG0642 Cell-cycle nuclear pro 99.8 3.2E-20 6.9E-25 159.6 15.4 263 31-366 283-565 (577)
155 KOG0303 Actin-binding protein 99.8 1.9E-19 4.1E-24 148.5 19.2 225 88-345 73-321 (472)
156 KOG1007 WD repeat protein TSSC 99.8 2.4E-19 5.2E-24 142.2 18.9 286 36-363 57-362 (370)
157 KOG1274 WD40 repeat protein [G 99.8 1.1E-18 2.5E-23 158.1 25.4 253 39-345 10-282 (933)
158 KOG0307 Vesicle coat complex C 99.8 8.3E-21 1.8E-25 175.7 11.3 241 47-325 69-330 (1049)
159 KOG0321 WD40 repeat-containing 99.8 3E-19 6.4E-24 155.7 19.3 241 93-365 44-350 (720)
160 KOG4378 Nuclear protein COP1 [ 99.8 3.6E-19 7.8E-24 151.0 18.9 234 118-364 12-282 (673)
161 KOG1538 Uncharacterized conser 99.8 6.4E-19 1.4E-23 154.6 19.9 263 44-363 14-294 (1081)
162 KOG2055 WD40 repeat protein [G 99.8 9.6E-19 2.1E-23 147.1 19.4 230 96-363 213-468 (514)
163 KOG1273 WD40 repeat protein [G 99.8 1.4E-18 2.9E-23 139.6 19.4 240 88-368 17-286 (405)
164 KOG1538 Uncharacterized conser 99.8 7.3E-18 1.6E-22 148.1 23.2 241 13-282 18-291 (1081)
165 KOG1445 Tumor-specific antigen 99.8 2.2E-18 4.7E-23 150.5 18.7 109 257-365 628-753 (1012)
166 KOG1034 Transcriptional repres 99.8 5.2E-18 1.1E-22 137.0 18.1 240 91-367 33-342 (385)
167 KOG0650 WD40 repeat nucleolar 99.8 3.5E-17 7.6E-22 142.0 22.9 261 33-319 391-732 (733)
168 KOG1188 WD40 repeat protein [G 99.8 8.8E-18 1.9E-22 136.3 17.4 253 66-361 48-345 (376)
169 KOG1517 Guanine nucleotide bin 99.8 3.5E-17 7.6E-22 150.6 23.3 259 96-366 1064-1385(1387)
170 KOG1009 Chromatin assembly com 99.8 2.7E-17 6E-22 136.3 19.8 245 96-366 13-376 (434)
171 KOG2919 Guanine nucleotide-bin 99.8 7E-17 1.5E-21 130.3 21.6 241 63-313 66-361 (406)
172 KOG0644 Uncharacterized conser 99.8 1.4E-19 3.1E-24 162.2 6.6 242 84-368 178-432 (1113)
173 KOG1587 Cytoplasmic dynein int 99.8 3.4E-16 7.4E-21 141.0 27.7 241 68-323 222-517 (555)
174 KOG2110 Uncharacterized conser 99.8 7.1E-16 1.5E-20 126.7 25.9 220 96-365 5-251 (391)
175 KOG1310 WD40 repeat protein [G 99.8 4.5E-18 9.7E-23 146.2 13.6 239 85-366 39-307 (758)
176 KOG1240 Protein kinase contain 99.8 9.5E-17 2.1E-21 149.9 23.3 269 83-360 1035-1431(1431)
177 COG2319 FOG: WD40 repeat [Gene 99.8 6.7E-14 1.5E-18 126.7 41.9 331 13-363 71-443 (466)
178 KOG0303 Actin-binding protein 99.8 6E-17 1.3E-21 133.9 18.5 197 160-365 76-297 (472)
179 KOG1334 WD40 repeat protein [G 99.8 2.1E-17 4.5E-22 140.1 14.4 271 84-364 130-468 (559)
180 KOG2096 WD40 repeat protein [G 99.8 1.1E-16 2.3E-21 129.0 17.5 190 164-363 85-309 (420)
181 KOG0649 WD40 repeat protein [G 99.8 1.2E-15 2.7E-20 118.5 22.5 222 13-284 16-274 (325)
182 COG2319 FOG: WD40 repeat [Gene 99.8 2.3E-14 5E-19 129.7 35.1 279 37-365 60-362 (466)
183 KOG1007 WD repeat protein TSSC 99.8 5.8E-17 1.2E-21 128.8 15.3 194 41-283 122-360 (370)
184 KOG4227 WD40 repeat protein [G 99.7 6.6E-16 1.4E-20 127.8 20.4 288 36-362 50-387 (609)
185 KOG0290 Conserved WD40 repeat- 99.7 7.4E-16 1.6E-20 122.7 19.7 244 85-364 34-320 (364)
186 KOG1963 WD40 repeat protein [G 99.7 2.1E-15 4.6E-20 136.7 24.9 303 13-363 166-539 (792)
187 KOG0290 Conserved WD40 repeat- 99.7 2.1E-15 4.6E-20 120.1 21.5 233 94-359 94-362 (364)
188 KOG0644 Uncharacterized conser 99.7 5.1E-18 1.1E-22 152.4 7.4 283 29-366 177-472 (1113)
189 PRK11028 6-phosphogluconolacto 99.7 2.9E-14 6.3E-19 125.0 30.7 257 64-362 8-304 (330)
190 KOG4227 WD40 repeat protein [G 99.7 9.7E-16 2.1E-20 126.9 19.6 237 89-363 49-323 (609)
191 KOG1963 WD40 repeat protein [G 99.7 2.6E-14 5.6E-19 129.8 29.4 288 65-367 34-380 (792)
192 KOG0322 G-protein beta subunit 99.7 2.6E-16 5.6E-21 123.6 14.5 229 34-283 6-322 (323)
193 KOG1517 Guanine nucleotide bin 99.7 2.4E-15 5.2E-20 138.8 21.4 245 64-325 1082-1384(1387)
194 KOG1188 WD40 repeat protein [G 99.7 4.7E-15 1E-19 120.7 19.8 190 109-330 41-250 (376)
195 KOG1587 Cytoplasmic dynein int 99.7 1.2E-14 2.6E-19 131.1 23.8 239 117-363 221-517 (555)
196 KOG2111 Uncharacterized conser 99.7 7.7E-14 1.7E-18 112.7 24.4 230 98-366 7-260 (346)
197 KOG0771 Prolactin regulatory e 99.7 3E-14 6.5E-19 119.2 22.8 183 169-363 148-355 (398)
198 KOG1272 WD40-repeat-containing 99.7 2.6E-16 5.5E-21 132.8 10.5 224 96-360 129-360 (545)
199 KOG1524 WD40 repeat-containing 99.7 7.4E-15 1.6E-19 126.3 18.9 241 94-361 12-285 (737)
200 KOG2321 WD40 repeat protein [G 99.7 2E-14 4.4E-19 124.6 21.1 263 87-362 43-343 (703)
201 KOG4497 Uncharacterized conser 99.7 8.3E-14 1.8E-18 113.1 23.0 314 13-355 14-425 (447)
202 PF02239 Cytochrom_D1: Cytochr 99.7 8.3E-13 1.8E-17 115.9 31.4 286 65-368 13-353 (369)
203 KOG2110 Uncharacterized conser 99.7 3.6E-13 7.9E-18 111.0 26.6 254 97-364 47-332 (391)
204 KOG1009 Chromatin assembly com 99.7 8.3E-14 1.8E-18 116.0 22.9 162 42-221 13-178 (434)
205 KOG1310 WD40 repeat protein [G 99.6 4.4E-14 9.6E-19 122.0 17.9 180 29-244 37-231 (758)
206 KOG1240 Protein kinase contain 99.6 2.5E-13 5.4E-18 127.5 24.2 237 29-283 1035-1333(1431)
207 KOG1524 WD40 repeat-containing 99.6 2.4E-14 5.2E-19 123.2 15.1 187 84-319 92-283 (737)
208 KOG0642 Cell-cycle nuclear pro 99.6 3.3E-14 7.2E-19 123.0 14.6 209 32-256 334-573 (577)
209 KOG2394 WD40 protein DMR-N9 [G 99.6 5.5E-14 1.2E-18 121.0 15.8 155 96-266 219-384 (636)
210 KOG3881 Uncharacterized conser 99.6 3.4E-13 7.4E-18 111.9 19.8 246 94-367 53-325 (412)
211 KOG4497 Uncharacterized conser 99.6 6.2E-13 1.3E-17 108.1 20.0 257 101-364 13-393 (447)
212 PRK01742 tolB translocation pr 99.6 3.3E-13 7.1E-18 122.2 20.3 226 67-344 183-426 (429)
213 KOG1523 Actin-related protein 99.6 5E-13 1.1E-17 108.1 18.6 199 159-365 4-239 (361)
214 KOG1272 WD40-repeat-containing 99.6 9.4E-15 2E-19 123.5 8.9 215 13-282 135-360 (545)
215 KOG1523 Actin-related protein 99.5 3.5E-12 7.5E-17 103.4 21.2 234 91-359 5-275 (361)
216 KOG1334 WD40 repeat protein [G 99.5 1.3E-13 2.7E-18 117.5 12.6 278 29-324 129-468 (559)
217 KOG0771 Prolactin regulatory e 99.5 3.2E-13 7E-18 113.1 14.0 184 61-285 159-355 (398)
218 KOG2394 WD40 protein DMR-N9 [G 99.5 2.2E-12 4.8E-17 111.3 18.9 182 177-366 187-456 (636)
219 KOG2111 Uncharacterized conser 99.5 6.1E-11 1.3E-15 96.2 25.2 161 118-287 75-259 (346)
220 KOG1409 Uncharacterized conser 99.5 4.4E-12 9.5E-17 103.8 18.2 312 31-363 13-395 (404)
221 KOG3881 Uncharacterized conser 99.5 5E-12 1.1E-16 105.1 18.5 217 91-344 100-342 (412)
222 KOG1354 Serine/threonine prote 99.5 2.9E-11 6.4E-16 99.0 20.0 246 96-364 25-361 (433)
223 PRK11028 6-phosphogluconolacto 99.4 2.1E-10 4.6E-15 100.6 27.3 216 112-363 6-259 (330)
224 TIGR03300 assembly_YfgL outer 99.4 4.6E-10 1E-14 100.4 29.6 272 64-359 71-376 (377)
225 PRK03629 tolB translocation pr 99.4 1E-10 2.2E-15 105.8 24.3 214 89-344 191-428 (429)
226 PRK04922 tolB translocation pr 99.4 9.4E-11 2E-15 106.4 23.3 216 86-343 193-432 (433)
227 KOG2139 WD40 repeat protein [G 99.4 3.3E-10 7.2E-15 93.6 22.9 251 97-362 99-431 (445)
228 KOG0974 WD-repeat protein WDR6 99.4 1.8E-11 3.9E-16 113.6 17.0 194 96-323 87-289 (967)
229 PRK01742 tolB translocation pr 99.4 5.6E-11 1.2E-15 107.7 19.9 182 167-362 205-401 (429)
230 KOG4190 Uncharacterized conser 99.4 5.6E-12 1.2E-16 109.5 12.1 279 34-358 727-1032(1034)
231 KOG0974 WD-repeat protein WDR6 99.4 5.7E-11 1.2E-15 110.3 19.4 175 176-364 100-290 (967)
232 KOG2321 WD40 repeat protein [G 99.4 9.4E-11 2E-15 102.3 18.4 186 100-325 137-346 (703)
233 PRK05137 tolB translocation pr 99.4 8.5E-10 1.8E-14 100.4 25.9 217 85-343 190-432 (435)
234 KOG1064 RAVE (regulator of V-A 99.4 1.7E-11 3.8E-16 119.4 14.9 220 92-355 2204-2439(2439)
235 PRK02889 tolB translocation pr 99.4 3.4E-10 7.4E-15 102.5 22.6 220 85-343 184-424 (427)
236 KOG0280 Uncharacterized conser 99.3 3.5E-10 7.6E-15 90.9 19.0 177 177-364 87-286 (339)
237 COG5354 Uncharacterized protei 99.3 5.1E-09 1.1E-13 90.5 27.0 298 44-365 34-398 (561)
238 TIGR02658 TTQ_MADH_Hv methylam 99.3 6.2E-08 1.3E-12 83.6 33.9 259 68-368 27-336 (352)
239 KOG2315 Predicted translation 99.3 3E-09 6.5E-14 92.9 25.5 265 98-366 75-394 (566)
240 KOG2139 WD40 repeat protein [G 99.3 1.9E-10 4.2E-15 95.0 17.0 177 167-357 100-306 (445)
241 TIGR03300 assembly_YfgL outer 99.3 2.3E-09 5E-14 95.9 25.1 248 107-368 64-344 (377)
242 PF08662 eIF2A: Eukaryotic tra 99.3 3.4E-10 7.4E-15 90.4 17.4 130 238-368 39-185 (194)
243 KOG4547 WD40 repeat-containing 99.3 1E-09 2.2E-14 96.3 20.2 170 105-287 2-223 (541)
244 KOG1409 Uncharacterized conser 99.3 3.4E-10 7.3E-15 93.0 15.3 249 84-366 12-274 (404)
245 PF08662 eIF2A: Eukaryotic tra 99.3 1.2E-09 2.5E-14 87.3 17.9 107 166-284 60-179 (194)
246 KOG1064 RAVE (regulator of V-A 99.2 6.7E-11 1.5E-15 115.5 11.9 182 167-368 2210-2404(2439)
247 PF02239 Cytochrom_D1: Cytochr 99.2 2.8E-08 6.1E-13 87.5 27.2 181 109-327 6-207 (369)
248 TIGR02800 propeller_TolB tol-p 99.2 7.1E-09 1.5E-13 94.2 23.9 159 87-286 180-356 (417)
249 PRK03629 tolB translocation pr 99.2 1.5E-08 3.2E-13 91.8 25.3 185 167-364 200-408 (429)
250 PRK05137 tolB translocation pr 99.2 1.6E-08 3.4E-13 92.1 25.3 186 167-366 203-416 (435)
251 PRK04922 tolB translocation pr 99.2 6.6E-09 1.4E-13 94.4 22.2 185 167-365 205-414 (433)
252 KOG2315 Predicted translation 99.2 4.3E-08 9.2E-13 85.9 25.4 305 13-343 40-410 (566)
253 KOG1354 Serine/threonine prote 99.2 4.8E-09 1E-13 86.3 18.4 215 97-324 85-361 (433)
254 KOG1645 RING-finger-containing 99.2 2.6E-09 5.7E-14 89.6 15.9 245 83-363 180-462 (463)
255 KOG2314 Translation initiation 99.1 8.1E-08 1.8E-12 84.1 24.8 275 83-364 238-575 (698)
256 PRK04792 tolB translocation pr 99.1 3.1E-08 6.8E-13 90.1 23.4 214 90-344 211-447 (448)
257 PRK11138 outer membrane biogen 99.1 2E-07 4.3E-12 83.9 28.3 244 107-361 119-393 (394)
258 PF13360 PQQ_2: PQQ-like domai 99.1 1.8E-07 3.9E-12 78.0 26.0 214 117-369 2-237 (238)
259 PRK00178 tolB translocation pr 99.1 7E-08 1.5E-12 87.9 25.2 215 87-343 189-427 (430)
260 PF00400 WD40: WD domain, G-be 99.1 3.3E-10 7.2E-15 65.0 6.5 39 86-124 1-39 (39)
261 KOG0280 Uncharacterized conser 99.1 1.4E-08 3.1E-13 81.9 17.4 241 96-366 69-337 (339)
262 KOG0309 Conserved WD40 repeat- 99.1 7.3E-10 1.6E-14 99.7 10.8 258 96-364 24-341 (1081)
263 PRK02889 tolB translocation pr 99.1 5.2E-08 1.1E-12 88.4 21.7 182 167-362 197-403 (427)
264 KOG4547 WD40 repeat-containing 99.1 4E-08 8.7E-13 86.5 19.6 180 177-363 7-221 (541)
265 PF10282 Lactonase: Lactonase, 99.0 5.2E-06 1.1E-10 73.2 32.5 258 66-362 11-322 (345)
266 KOG1275 PAB-dependent poly(A) 99.0 9.3E-09 2E-13 94.9 15.2 253 95-360 53-340 (1118)
267 PF13360 PQQ_2: PQQ-like domai 99.0 1.2E-06 2.6E-11 73.0 26.8 213 68-329 3-237 (238)
268 KOG1912 WD40 repeat protein [G 99.0 6.5E-08 1.4E-12 88.0 19.7 333 15-367 23-511 (1062)
269 TIGR02800 propeller_TolB tol-p 99.0 2.4E-07 5.2E-12 84.2 24.2 183 167-363 191-398 (417)
270 KOG4190 Uncharacterized conser 99.0 2.3E-09 4.9E-14 93.7 9.5 205 88-331 727-957 (1034)
271 PLN02919 haloacid dehalogenase 99.0 2E-06 4.3E-11 85.9 29.7 240 100-366 571-892 (1057)
272 KOG0309 Conserved WD40 repeat- 99.0 5.5E-09 1.2E-13 94.2 10.4 125 84-244 102-232 (1081)
273 PRK11138 outer membrane biogen 98.9 8.1E-07 1.8E-11 79.9 24.5 248 107-368 68-359 (394)
274 KOG4532 WD40-like repeat conta 98.9 1.6E-07 3.5E-12 75.0 17.0 178 177-365 86-285 (344)
275 KOG2041 WD40 repeat protein [G 98.9 2.1E-07 4.6E-12 84.1 19.2 274 46-362 18-337 (1189)
276 COG5170 CDC55 Serine/threonine 98.9 4.2E-08 9E-13 79.9 13.3 215 96-320 26-365 (460)
277 PRK01029 tolB translocation pr 98.9 1.1E-06 2.4E-11 79.5 24.0 221 89-344 177-425 (428)
278 KOG4714 Nucleoporin [Nuclear s 98.9 2.5E-08 5.4E-13 79.2 10.8 154 82-245 75-255 (319)
279 KOG2041 WD40 repeat protein [G 98.9 5.1E-08 1.1E-12 87.9 14.0 235 96-353 14-279 (1189)
280 PF10282 Lactonase: Lactonase, 98.9 4.9E-05 1.1E-09 67.1 35.5 294 20-341 13-345 (345)
281 KOG4532 WD40-like repeat conta 98.9 1.4E-06 3E-11 69.8 19.7 226 100-363 71-332 (344)
282 KOG3914 WD repeat protein WDR4 98.8 1E-07 2.2E-12 80.3 13.5 151 98-288 64-227 (390)
283 PRK00178 tolB translocation pr 98.8 3.7E-06 8E-11 76.7 24.5 183 167-364 200-408 (430)
284 PRK04792 tolB translocation pr 98.8 4.4E-06 9.6E-11 76.2 23.6 184 167-364 219-427 (448)
285 TIGR02658 TTQ_MADH_Hv methylam 98.8 3.5E-05 7.7E-10 66.8 27.6 209 118-368 27-293 (352)
286 KOG2695 WD40 repeat protein [G 98.8 2.8E-08 6E-13 82.0 8.2 153 177-343 226-402 (425)
287 KOG1912 WD40 repeat protein [G 98.7 1.4E-06 3.1E-11 79.6 17.9 225 98-363 17-305 (1062)
288 PF15492 Nbas_N: Neuroblastoma 98.7 2E-05 4.2E-10 64.2 22.1 183 177-367 10-264 (282)
289 PRK01029 tolB translocation pr 98.7 9.5E-06 2.1E-10 73.5 22.9 194 168-367 187-408 (428)
290 COG5170 CDC55 Serine/threonine 98.7 3.6E-07 7.7E-12 74.6 11.7 190 167-364 28-311 (460)
291 KOG2695 WD40 repeat protein [G 98.7 6.3E-08 1.4E-12 80.0 7.5 131 150-287 228-379 (425)
292 KOG2314 Translation initiation 98.7 1.7E-05 3.8E-10 70.0 22.1 256 100-363 214-526 (698)
293 COG5354 Uncharacterized protei 98.7 1.2E-05 2.7E-10 70.1 20.9 245 90-364 26-308 (561)
294 PLN02919 haloacid dehalogenase 98.7 5.7E-05 1.2E-09 75.8 28.7 206 98-326 625-892 (1057)
295 COG4946 Uncharacterized protei 98.7 0.00022 4.8E-09 62.1 30.0 162 107-282 277-475 (668)
296 KOG0882 Cyclophilin-related pe 98.6 4.5E-07 9.7E-12 77.6 11.5 242 39-330 6-313 (558)
297 KOG1832 HIV-1 Vpr-binding prot 98.6 6.5E-08 1.4E-12 89.3 6.0 250 83-350 1088-1377(1516)
298 PF00400 WD40: WD domain, G-be 98.6 2.3E-07 5.1E-12 52.9 6.4 37 246-282 1-39 (39)
299 KOG3914 WD repeat protein WDR4 98.6 7.6E-07 1.6E-11 75.1 11.1 77 167-253 153-232 (390)
300 COG4946 Uncharacterized protei 98.5 8.5E-05 1.8E-09 64.6 21.9 125 93-221 356-501 (668)
301 KOG4714 Nucleoporin [Nuclear s 98.5 9.5E-07 2.1E-11 70.4 9.5 188 168-363 39-255 (319)
302 PF04762 IKI3: IKI3 family; I 98.5 0.00056 1.2E-08 67.6 30.7 276 44-363 211-565 (928)
303 PF15492 Nbas_N: Neuroblastoma 98.5 4.3E-05 9.3E-10 62.2 18.9 199 99-332 46-269 (282)
304 PF08450 SGL: SMP-30/Gluconola 98.5 0.00049 1.1E-08 57.6 29.9 213 101-349 4-243 (246)
305 PF04762 IKI3: IKI3 family; I 98.5 0.0019 4.2E-08 63.9 32.6 290 15-322 217-564 (928)
306 PF06433 Me-amine-dh_H: Methyl 98.4 0.00072 1.6E-08 57.6 26.2 255 83-369 24-327 (342)
307 KOG0882 Cyclophilin-related pe 98.4 2.8E-06 6.1E-11 72.9 10.9 194 167-368 11-237 (558)
308 KOG2066 Vacuolar assembly/sort 98.4 2.2E-05 4.8E-10 72.3 16.7 177 96-322 39-233 (846)
309 cd00216 PQQ_DH Dehydrogenases 98.4 0.0011 2.4E-08 61.4 27.5 226 109-369 111-431 (488)
310 COG2706 3-carboxymuconate cycl 98.3 0.0012 2.6E-08 55.7 28.6 261 67-363 15-322 (346)
311 PF07433 DUF1513: Protein of u 98.3 0.0015 3.2E-08 55.0 25.2 228 99-356 7-279 (305)
312 PF08596 Lgl_C: Lethal giant l 98.3 0.00037 8E-09 62.0 21.7 252 98-361 3-334 (395)
313 KOG3617 WD40 and TPR repeat-co 98.3 1.9E-05 4.1E-10 73.3 13.8 105 100-244 19-131 (1416)
314 KOG3621 WD40 repeat-containing 98.2 0.00041 8.9E-09 63.4 20.7 118 95-245 32-155 (726)
315 PRK04043 tolB translocation pr 98.2 0.0014 3.1E-08 59.2 24.3 148 98-287 189-360 (419)
316 COG2706 3-carboxymuconate cycl 98.2 0.0023 5.1E-08 54.0 25.7 190 167-363 41-275 (346)
317 KOG2066 Vacuolar assembly/sort 98.2 7.7E-05 1.7E-09 68.9 15.1 140 105-284 80-233 (846)
318 PRK04043 tolB translocation pr 98.2 0.0027 5.9E-08 57.4 24.5 187 167-364 189-402 (419)
319 KOG1275 PAB-dependent poly(A) 98.1 5.5E-05 1.2E-09 70.8 13.4 180 109-321 148-341 (1118)
320 smart00320 WD40 WD40 repeats. 98.1 9.8E-06 2.1E-10 45.4 5.5 39 86-124 2-40 (40)
321 PF04053 Coatomer_WDAD: Coatom 98.1 0.0023 4.9E-08 57.9 22.2 221 91-365 27-265 (443)
322 PF07433 DUF1513: Protein of u 98.1 0.0046 9.9E-08 52.2 22.2 200 90-317 50-280 (305)
323 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.00066 1.4E-08 47.7 13.7 98 99-239 2-109 (111)
324 PF08596 Lgl_C: Lethal giant l 98.0 0.0059 1.3E-07 54.5 23.4 160 200-366 77-294 (395)
325 KOG1645 RING-finger-containing 98.0 8.7E-05 1.9E-09 63.2 10.8 90 187-288 175-270 (463)
326 PF03178 CPSF_A: CPSF A subuni 98.0 0.011 2.3E-07 51.8 26.2 164 185-359 62-262 (321)
327 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.0016 3.5E-08 45.7 14.3 87 177-279 17-109 (111)
328 KOG3617 WD40 and TPR repeat-co 97.9 0.0015 3.2E-08 61.3 18.1 69 46-126 63-131 (1416)
329 KOG2114 Vacuolar assembly/sort 97.9 0.0082 1.8E-07 56.6 21.8 184 63-287 40-246 (933)
330 PF04053 Coatomer_WDAD: Coatom 97.8 0.0026 5.6E-08 57.5 18.0 137 210-364 34-175 (443)
331 PF11768 DUF3312: Protein of u 97.8 0.0023 5E-08 57.7 17.3 73 94-195 257-331 (545)
332 KOG1008 Uncharacterized conser 97.8 1.6E-05 3.4E-10 71.5 3.8 189 167-363 58-276 (783)
333 PF11768 DUF3312: Protein of u 97.8 0.024 5.1E-07 51.5 28.1 71 294-365 261-332 (545)
334 PF03178 CPSF_A: CPSF A subuni 97.8 0.019 4E-07 50.3 24.8 129 108-244 42-202 (321)
335 KOG1920 IkappaB kinase complex 97.8 0.0078 1.7E-07 58.9 21.3 226 96-364 68-324 (1265)
336 PF08553 VID27: VID27 cytoplas 97.8 0.00097 2.1E-08 63.7 14.9 127 233-362 501-647 (794)
337 PF00780 CNH: CNH domain; Int 97.7 0.024 5.3E-07 48.3 24.7 219 106-368 5-261 (275)
338 KOG2114 Vacuolar assembly/sort 97.7 0.012 2.5E-07 55.6 19.9 211 13-260 29-260 (933)
339 cd00216 PQQ_DH Dehydrogenases 97.7 0.013 2.7E-07 54.5 20.7 237 108-369 61-381 (488)
340 KOG1832 HIV-1 Vpr-binding prot 97.7 4.8E-05 1E-09 71.1 4.7 154 200-365 1092-1258(1516)
341 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.06 1.3E-06 50.4 26.8 180 108-287 69-336 (527)
342 PF06977 SdiA-regulated: SdiA- 97.6 0.029 6.3E-07 46.5 23.3 180 167-359 23-247 (248)
343 PF08553 VID27: VID27 cytoplas 97.6 0.0078 1.7E-07 57.8 17.9 140 107-282 492-645 (794)
344 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.028 6E-07 45.7 25.7 81 84-164 81-165 (354)
345 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.03 6.5E-07 45.6 23.5 109 108-254 23-133 (354)
346 PRK02888 nitrous-oxide reducta 97.5 0.06 1.3E-06 50.2 22.1 96 266-363 288-405 (635)
347 PF04841 Vps16_N: Vps16, N-ter 97.5 0.065 1.4E-06 48.5 26.5 225 69-331 62-323 (410)
348 KOG1897 Damage-specific DNA bi 97.5 0.1 2.2E-06 50.5 32.7 126 233-359 845-1001(1096)
349 KOG1008 Uncharacterized conser 97.5 5.3E-05 1.2E-09 68.3 1.9 159 91-285 97-276 (783)
350 PF08450 SGL: SMP-30/Gluconola 97.4 0.064 1.4E-06 44.9 28.3 157 99-265 42-233 (246)
351 smart00320 WD40 WD40 repeats. 97.3 0.001 2.2E-08 36.6 5.5 37 246-282 2-40 (40)
352 KOG3621 WD40 repeat-containing 97.3 0.002 4.4E-08 59.1 9.5 105 259-363 38-155 (726)
353 KOG1920 IkappaB kinase complex 97.3 0.14 3E-06 50.7 21.8 179 96-286 109-324 (1265)
354 KOG4640 Anaphase-promoting com 97.2 0.0019 4.1E-08 58.5 8.9 87 167-265 22-114 (665)
355 KOG2444 WD40 repeat protein [G 97.2 0.0013 2.8E-08 52.1 6.2 130 233-363 37-178 (238)
356 COG3490 Uncharacterized protei 97.1 0.066 1.4E-06 44.3 15.5 51 64-123 136-186 (366)
357 PF05096 Glu_cyclase_2: Glutam 97.1 0.13 2.8E-06 42.6 23.7 170 168-350 47-249 (264)
358 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0026 5.6E-08 37.3 5.4 34 96-130 11-44 (47)
359 PRK02888 nitrous-oxide reducta 97.1 0.27 5.8E-06 46.0 21.0 104 105-245 285-405 (635)
360 KOG2395 Protein involved in va 97.0 0.012 2.7E-07 52.5 11.4 127 107-244 344-500 (644)
361 TIGR03074 PQQ_membr_DH membran 97.0 0.39 8.4E-06 46.9 22.6 251 107-368 193-483 (764)
362 KOG2079 Vacuolar assembly/sort 97.0 0.0032 7E-08 60.7 8.1 108 168-287 92-206 (1206)
363 PF12894 Apc4_WD40: Anaphase-p 97.0 0.0032 7E-08 36.9 5.2 31 332-362 10-41 (47)
364 PF04841 Vps16_N: Vps16, N-ter 96.8 0.41 8.9E-06 43.4 24.7 171 166-345 81-271 (410)
365 KOG4640 Anaphase-promoting com 96.8 0.011 2.4E-07 53.9 9.2 91 96-218 20-115 (665)
366 PF12234 Rav1p_C: RAVE protein 96.7 0.13 2.8E-06 48.4 16.0 122 88-243 21-155 (631)
367 PF06433 Me-amine-dh_H: Methyl 96.7 0.36 7.7E-06 41.7 25.3 59 186-254 270-330 (342)
368 KOG2395 Protein involved in va 96.6 0.045 9.8E-07 49.1 11.7 126 233-362 353-500 (644)
369 PHA02713 hypothetical protein; 96.6 0.26 5.7E-06 46.6 17.7 128 237-366 368-537 (557)
370 KOG4441 Proteins containing BT 96.5 0.39 8.4E-06 45.5 18.1 221 106-365 283-549 (571)
371 KOG4499 Ca2+-binding protein R 96.5 0.22 4.8E-06 40.1 13.8 91 169-266 161-263 (310)
372 PF02897 Peptidase_S9_N: Proly 96.5 0.67 1.5E-05 42.2 29.0 235 98-368 125-410 (414)
373 KOG4499 Ca2+-binding protein R 96.3 0.43 9.3E-06 38.5 17.2 135 210-352 110-275 (310)
374 PHA02713 hypothetical protein; 96.2 0.47 1E-05 45.0 17.1 50 237-286 481-535 (557)
375 KOG2444 WD40 repeat protein [G 96.1 0.022 4.8E-07 45.4 6.3 102 177-288 72-181 (238)
376 PF05096 Glu_cyclase_2: Glutam 95.8 0.9 2E-05 37.8 23.4 129 86-253 33-166 (264)
377 COG3490 Uncharacterized protei 95.8 0.33 7.1E-06 40.4 12.0 201 103-321 120-347 (366)
378 PF06977 SdiA-regulated: SdiA- 95.8 0.94 2E-05 37.7 23.1 181 90-279 15-245 (248)
379 PF14870 PSII_BNR: Photosynthe 95.7 0.82 1.8E-05 39.3 14.8 158 90-281 138-301 (302)
380 PF14727 PHTB1_N: PTHB1 N-term 95.7 1.6 3.4E-05 39.4 28.7 242 107-365 36-363 (418)
381 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.7 1.9 4.2E-05 40.5 20.5 180 175-367 69-338 (527)
382 COG3391 Uncharacterized conser 95.4 2 4.3E-05 38.6 22.6 206 98-344 75-309 (381)
383 KOG2079 Vacuolar assembly/sort 95.3 0.13 2.9E-06 50.2 9.6 104 257-362 90-203 (1206)
384 PF00780 CNH: CNH domain; Int 95.2 1.7 3.8E-05 36.9 25.6 204 98-332 37-265 (275)
385 PF10313 DUF2415: Uncharacteri 95.2 0.13 2.9E-06 29.2 5.5 32 97-128 1-35 (43)
386 COG0823 TolB Periplasmic compo 95.1 2.5 5.5E-05 38.4 16.5 149 185-345 218-381 (425)
387 PF12234 Rav1p_C: RAVE protein 94.8 1.7 3.7E-05 41.2 15.1 50 233-282 48-102 (631)
388 COG3391 Uncharacterized conser 94.8 3 6.4E-05 37.5 22.1 188 169-367 77-288 (381)
389 PF14727 PHTB1_N: PTHB1 N-term 94.8 2.1 4.5E-05 38.7 14.9 59 304-362 145-204 (418)
390 PRK13616 lipoprotein LpqB; Pro 94.7 3.4 7.3E-05 39.4 17.0 152 98-276 398-560 (591)
391 PF14781 BBS2_N: Ciliary BBSom 94.7 1.2 2.6E-05 32.7 13.7 96 100-195 2-127 (136)
392 COG3386 Gluconolactonase [Carb 94.0 3.7 8E-05 35.5 14.9 91 168-266 165-264 (307)
393 KOG1897 Damage-specific DNA bi 94.0 7 0.00015 38.7 21.9 139 98-244 776-942 (1096)
394 COG3386 Gluconolactonase [Carb 93.8 4 8.7E-05 35.3 22.5 142 210-353 112-277 (307)
395 PRK13616 lipoprotein LpqB; Pro 93.5 7.3 0.00016 37.2 18.6 87 184-285 429-526 (591)
396 PHA03098 kelch-like protein; P 93.5 5.8 0.00013 37.5 16.2 127 236-366 358-515 (534)
397 KOG2377 Uncharacterized conser 93.5 2.4 5.2E-05 37.9 12.2 100 95-221 65-166 (657)
398 COG5276 Uncharacterized conser 93.4 4.3 9.4E-05 34.3 26.8 183 95-288 85-289 (370)
399 KOG4441 Proteins containing BT 93.3 6.8 0.00015 37.3 16.2 178 177-365 287-502 (571)
400 KOG3616 Selective LIM binding 93.3 3 6.5E-05 39.8 13.3 33 97-129 15-47 (1636)
401 PF00930 DPPIV_N: Dipeptidyl p 93.3 5.6 0.00012 35.3 23.1 126 237-362 159-313 (353)
402 PF08728 CRT10: CRT10; InterP 93.2 7.2 0.00016 37.7 15.8 164 108-284 49-246 (717)
403 PF07569 Hira: TUP1-like enhan 93.1 0.78 1.7E-05 37.5 8.5 74 168-248 15-99 (219)
404 COG0823 TolB Periplasmic compo 93.0 7 0.00015 35.6 19.9 166 42-221 192-382 (425)
405 COG3823 Glutamine cyclotransfe 92.9 4 8.7E-05 32.6 12.0 153 185-350 68-247 (262)
406 PF07569 Hira: TUP1-like enhan 92.7 0.81 1.7E-05 37.4 8.0 30 333-363 66-96 (219)
407 PF10313 DUF2415: Uncharacteri 92.6 0.46 1E-05 27.0 4.5 30 334-363 1-34 (43)
408 COG5167 VID27 Protein involved 92.1 3.4 7.4E-05 37.6 11.5 125 233-362 487-632 (776)
409 PHA03098 kelch-like protein; P 92.0 11 0.00024 35.7 17.4 88 236-325 406-514 (534)
410 PF14655 RAB3GAP2_N: Rab3 GTPa 91.9 3.4 7.4E-05 37.3 11.5 51 86-136 297-347 (415)
411 PF05694 SBP56: 56kDa selenium 91.9 9.4 0.0002 34.4 16.9 188 177-365 89-345 (461)
412 PF10168 Nup88: Nuclear pore c 91.8 7.6 0.00016 38.0 14.5 72 210-289 86-184 (717)
413 KOG3630 Nuclear pore complex, 91.7 2.7 5.8E-05 42.1 11.1 135 203-345 93-255 (1405)
414 COG3204 Uncharacterized protei 91.5 7.9 0.00017 32.8 18.4 160 92-284 81-263 (316)
415 PHA02790 Kelch-like protein; P 91.3 13 0.00027 34.8 17.3 60 107-166 271-341 (480)
416 PHA02790 Kelch-like protein; P 91.2 13 0.00027 34.7 15.9 173 177-366 274-474 (480)
417 KOG1983 Tomosyn and related SN 91.2 11 0.00024 38.5 15.5 216 97-326 36-268 (993)
418 KOG3630 Nuclear pore complex, 91.1 4.9 0.00011 40.4 12.2 89 168-267 158-254 (1405)
419 PF14583 Pectate_lyase22: Olig 90.9 11 0.00024 33.5 31.4 95 82-176 16-122 (386)
420 COG3292 Predicted periplasmic 90.7 7.7 0.00017 36.0 12.4 139 210-358 166-314 (671)
421 KOG1900 Nuclear pore complex, 90.6 19 0.00041 37.1 15.9 162 95-286 77-274 (1311)
422 PF15390 DUF4613: Domain of un 90.5 5.9 0.00013 36.9 11.6 89 148-244 74-186 (671)
423 TIGR02276 beta_rpt_yvtn 40-res 90.4 1.2 2.7E-05 24.9 5.1 39 303-341 3-41 (42)
424 PRK13684 Ycf48-like protein; P 90.1 13 0.00027 32.8 16.7 107 167-282 216-329 (334)
425 PF00930 DPPIV_N: Dipeptidyl p 90.1 13 0.00028 33.0 23.0 242 96-351 42-347 (353)
426 KOG2247 WD40 repeat-containing 90.0 0.03 6.6E-07 49.7 -2.9 139 100-279 38-183 (615)
427 COG1520 FOG: WD40-like repeat 89.9 14 0.0003 33.1 17.1 180 177-368 70-274 (370)
428 COG5167 VID27 Protein involved 89.6 7.3 0.00016 35.6 11.2 139 107-282 478-630 (776)
429 KOG2280 Vacuolar assembly/sort 89.4 21 0.00046 34.4 17.6 71 41-126 42-112 (829)
430 KOG1898 Splicing factor 3b, su 89.4 26 0.00055 35.3 17.2 130 183-322 910-1048(1205)
431 KOG1900 Nuclear pore complex, 89.2 11 0.00025 38.5 13.2 128 233-363 96-273 (1311)
432 PF14779 BBS1: Ciliary BBSome 89.0 12 0.00027 31.2 16.8 64 167-241 178-255 (257)
433 PF14655 RAB3GAP2_N: Rab3 GTPa 88.8 18 0.00039 32.8 21.3 43 210-258 309-351 (415)
434 COG3292 Predicted periplasmic 88.6 21 0.00046 33.3 15.7 244 96-358 164-443 (671)
435 TIGR02276 beta_rpt_yvtn 40-res 88.3 3 6.6E-05 23.3 6.0 32 106-137 1-33 (42)
436 PF12341 DUF3639: Protein of u 87.9 1.6 3.4E-05 22.1 3.6 25 167-191 3-27 (27)
437 PF14781 BBS2_N: Ciliary BBSom 87.7 9.2 0.0002 28.2 9.7 64 304-368 64-131 (136)
438 PF14761 HPS3_N: Hermansky-Pud 87.7 13 0.00029 30.0 13.4 120 233-366 35-167 (215)
439 COG5276 Uncharacterized conser 87.1 18 0.00038 30.8 22.7 117 167-292 88-207 (370)
440 PF07995 GSDH: Glucose / Sorbo 87.0 21 0.00045 31.4 19.1 52 306-357 273-330 (331)
441 KOG2247 WD40 repeat-containing 86.9 0.086 1.9E-06 47.0 -2.1 137 212-357 38-183 (615)
442 PF11715 Nup160: Nucleoporin N 86.6 1.9 4.1E-05 40.9 6.5 41 97-137 215-259 (547)
443 PF05694 SBP56: 56kDa selenium 86.5 12 0.00026 33.8 10.6 39 99-137 183-241 (461)
444 PF08728 CRT10: CRT10; InterP 85.9 17 0.00038 35.2 12.0 127 98-243 102-245 (717)
445 COG5290 IkappaB kinase complex 85.0 41 0.00088 33.0 14.7 30 95-124 111-140 (1243)
446 PF02333 Phytase: Phytase; In 84.8 29 0.00062 31.0 21.8 171 107-285 67-291 (381)
447 KOG1916 Nuclear protein, conta 84.5 0.72 1.6E-05 44.7 2.4 160 90-285 126-324 (1283)
448 KOG1898 Splicing factor 3b, su 84.4 49 0.0011 33.5 17.5 137 98-244 879-1048(1205)
449 PF10168 Nup88: Nuclear pore c 84.3 45 0.00097 32.9 19.0 91 96-196 84-182 (717)
450 PLN00033 photosystem II stabil 84.2 32 0.00069 31.1 17.8 105 167-281 282-396 (398)
451 TIGR03074 PQQ_membr_DH membran 83.6 50 0.0011 32.9 26.0 32 107-138 259-290 (764)
452 KOG2280 Vacuolar assembly/sort 82.2 51 0.0011 32.0 15.4 51 183-245 62-113 (829)
453 KOG3522 Predicted guanine nucl 82.1 29 0.00063 34.0 11.7 113 167-288 583-701 (925)
454 COG3823 Glutamine cyclotransfe 81.3 27 0.00058 28.2 14.9 89 107-195 55-160 (262)
455 COG3204 Uncharacterized protei 81.0 34 0.00073 29.2 17.3 181 167-358 87-308 (316)
456 KOG1983 Tomosyn and related SN 80.9 32 0.00068 35.4 12.3 25 342-366 243-268 (993)
457 PF08801 Nucleoporin_N: Nup133 80.8 26 0.00056 32.0 11.1 126 230-362 40-219 (422)
458 PF15390 DUF4613: Domain of un 80.7 51 0.0011 31.1 14.8 46 300-345 346-396 (671)
459 TIGR03606 non_repeat_PQQ dehyd 80.3 49 0.0011 30.5 15.0 38 92-129 25-62 (454)
460 TIGR03032 conserved hypothetic 80.3 38 0.00082 29.3 12.6 48 107-154 212-259 (335)
461 PF02897 Peptidase_S9_N: Proly 80.1 47 0.001 30.2 28.2 107 13-128 129-262 (414)
462 smart00564 PQQ beta-propeller 80.0 5.4 0.00012 20.8 4.0 25 110-134 8-32 (33)
463 smart00564 PQQ beta-propeller 79.6 5.1 0.00011 20.9 3.8 27 219-252 6-32 (33)
464 PF11715 Nup160: Nucleoporin N 79.5 15 0.00032 35.0 9.3 73 174-253 157-257 (547)
465 PF12768 Rax2: Cortical protei 79.4 36 0.00077 29.1 10.5 93 185-282 16-121 (281)
466 KOG4460 Nuclear pore complex, 79.1 30 0.00065 32.0 10.2 76 167-250 105-204 (741)
467 PF01011 PQQ: PQQ enzyme repea 76.9 9.7 0.00021 20.9 4.5 29 110-138 2-30 (38)
468 PF07676 PD40: WD40-like Beta 76.7 10 0.00022 20.7 5.3 30 94-123 6-38 (39)
469 KOG4460 Nuclear pore complex, 76.7 65 0.0014 30.0 13.7 25 210-241 105-130 (741)
470 KOG1916 Nuclear protein, conta 76.6 2.8 6E-05 40.9 3.4 92 184-283 152-264 (1283)
471 PF01011 PQQ: PQQ enzyme repea 75.6 8.6 0.00019 21.1 4.0 22 233-254 7-28 (38)
472 PF12657 TFIIIC_delta: Transcr 75.1 21 0.00046 27.9 7.6 28 210-245 6-33 (173)
473 PF14583 Pectate_lyase22: Olig 74.7 64 0.0014 28.9 21.9 83 164-249 186-277 (386)
474 PF10647 Gmad1: Lipoprotein Lp 73.5 54 0.0012 27.5 15.5 142 87-265 13-174 (253)
475 PF13570 PQQ_3: PQQ-like domai 72.6 14 0.0003 20.4 4.9 17 306-322 23-39 (40)
476 KOG2377 Uncharacterized conser 71.9 81 0.0017 28.9 11.8 94 164-265 65-162 (657)
477 PF12657 TFIIIC_delta: Transcr 71.9 42 0.00091 26.2 8.6 30 334-363 86-122 (173)
478 KOG1896 mRNA cleavage and poly 71.5 1.3E+02 0.0029 31.2 15.1 137 118-264 1065-1241(1366)
479 COG4590 ABC-type uncharacteriz 70.2 32 0.0007 31.2 8.1 148 210-366 222-390 (733)
480 TIGR03118 PEPCTERM_chp_1 conse 69.4 74 0.0016 27.5 18.9 193 169-367 26-284 (336)
481 PF07995 GSDH: Glucose / Sorbo 67.1 89 0.0019 27.5 15.2 49 211-267 4-59 (331)
482 TIGR02604 Piru_Ver_Nterm putat 67.0 95 0.0021 27.8 17.0 58 167-225 15-87 (367)
483 PF14761 HPS3_N: Hermansky-Pud 66.9 30 0.00064 28.0 6.7 47 306-352 30-79 (215)
484 PF14779 BBS1: Ciliary BBSome 64.4 86 0.0019 26.4 15.3 56 304-359 195-255 (257)
485 PF01436 NHL: NHL repeat; Int 64.3 17 0.00037 18.3 3.8 24 336-359 4-28 (28)
486 PF01731 Arylesterase: Arylest 63.4 35 0.00076 23.1 5.6 48 314-363 36-85 (86)
487 TIGR02604 Piru_Ver_Nterm putat 62.9 1.1E+02 0.0025 27.3 17.3 62 210-272 125-201 (367)
488 COG1520 FOG: WD40-like repeat 60.7 1.2E+02 0.0027 27.0 23.6 185 110-332 70-278 (370)
489 PF10647 Gmad1: Lipoprotein Lp 60.6 1E+02 0.0022 25.9 13.2 62 301-362 74-144 (253)
490 PF11635 Med16: Mediator compl 58.7 2E+02 0.0044 28.8 17.5 62 296-357 263-345 (753)
491 PF10584 Proteasome_A_N: Prote 58.7 6 0.00013 19.1 0.9 11 12-22 5-15 (23)
492 KOG0783 Uncharacterized conser 58.2 1.6E+02 0.0035 29.4 10.7 48 230-278 402-452 (1267)
493 PF03088 Str_synth: Strictosid 57.4 44 0.00095 22.8 5.3 37 309-345 32-68 (89)
494 PF10214 Rrn6: RNA polymerase 57.2 2.2E+02 0.0047 28.7 19.8 110 167-285 147-277 (765)
495 PF09826 Beta_propel: Beta pro 56.6 1.8E+02 0.0039 27.6 26.2 52 313-365 303-358 (521)
496 KOG3522 Predicted guanine nucl 55.3 71 0.0015 31.5 8.0 137 177-327 549-702 (925)
497 COG5308 NUP170 Nuclear pore co 54.0 2.2E+02 0.0047 28.8 10.9 72 210-290 183-281 (1263)
498 COG5308 NUP170 Nuclear pore co 53.6 1.8E+02 0.0039 29.4 10.2 129 233-364 99-277 (1263)
499 PF01731 Arylesterase: Arylest 51.2 73 0.0016 21.5 5.6 30 97-126 54-84 (86)
500 PF12768 Rax2: Cortical protei 51.1 1.6E+02 0.0034 25.3 10.9 56 66-129 14-75 (281)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-46 Score=303.17 Aligned_cols=306 Identities=23% Similarity=0.348 Sum_probs=267.0
Q ss_pred cccCCCCceeeccCcc-------cccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCC
Q 041206 13 HKHSEGGETMMSDDDD-------LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNS 85 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (371)
-.|||+|+.||+|+.| +...-+...+++|...|.+++++|...+++ +|..++.|++|+ ...+
T Consensus 121 ~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iA----SG~~dg~I~lwd-------pktg 189 (480)
T KOG0271|consen 121 VQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIA----SGSKDGSIRLWD-------PKTG 189 (480)
T ss_pred EEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhh----ccccCCeEEEec-------CCCC
Confidence 3599999999999887 556778899999999999999999888765 467788999999 5566
Q ss_pred ceeeEeeeCccCCeEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEE
Q 041206 86 LATLMKLNGHKKAVTNVGLPS-----GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKS 160 (371)
Q Consensus 86 ~~~~~~l~~h~~~V~~~~~~~-----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (371)
.+..+.|+||+..|++++|.| ..++||+++.||+|+|||+..+.++..+..
T Consensus 190 ~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsg------------------------ 245 (480)
T KOG0271|consen 190 QQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG------------------------ 245 (480)
T ss_pred CcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEecc------------------------
Confidence 677889999999999999975 568999999999999999999999888775
Q ss_pred EEeCCCCeeEEEEeCC-EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEec-------------
Q 041206 161 WRVNAASVNALVVNND-LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSK------------- 225 (371)
Q Consensus 161 ~~~~~~~v~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~------------- 225 (371)
|+.+|+|+.|-.+ ++++|+.|++|++|+...+ .+...+++|. .|+.++.+.|--|=+|
T Consensus 246 ---HT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG----~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~s 318 (480)
T KOG0271|consen 246 ---HTASVTCVRWGGEGLIYSGSQDRTIKVWRALDG----KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFS 318 (480)
T ss_pred ---CccceEEEEEcCCceEEecCCCceEEEEEccch----hHHHhhcccchheeeeeccchhhhhccccccccccCCChH
Confidence 6778999999977 9999999999999999998 8999999999 9999998843211111
Q ss_pred -----------------ccceeeeeCCCeEEEEECCC-ceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccC
Q 041206 226 -----------------EEAAVFEFCGHTTRTWNLDN-LECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTH 285 (371)
Q Consensus 226 -----------------~~~~~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~ 285 (371)
+..++.++.|.++.+|+... .+++..+.+|..-|+.+.|+ +.+++++|.|..|++||-++
T Consensus 319 e~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t 398 (480)
T KOG0271|consen 319 EEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT 398 (480)
T ss_pred HHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCC
Confidence 23345559999999999865 45888999999999999999 57999999999999999888
Q ss_pred CCC----cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEE
Q 041206 286 TKN----NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVW 359 (371)
Q Consensus 286 ~~~----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw 359 (371)
++. .+++..+..+.++.+.++|++|+.|.++++||+++.++...+. |..+|.++.|+||| ++++|+.|..+++|
T Consensus 399 Gk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 399 GKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLW 478 (480)
T ss_pred cchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEee
Confidence 775 4466677777888888899999999999999999999999998 78999999999999 99999999999999
Q ss_pred E
Q 041206 360 K 360 (371)
Q Consensus 360 ~ 360 (371)
.
T Consensus 479 ~ 479 (480)
T KOG0271|consen 479 R 479 (480)
T ss_pred c
Confidence 5
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-45 Score=297.91 Aligned_cols=286 Identities=19% Similarity=0.240 Sum_probs=251.8
Q ss_pred ceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEE
Q 041206 32 GRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKL 111 (371)
Q Consensus 32 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 111 (371)
-++-..+.||...|.++.|+|... ..++|+.|..+++|+ .....+..+.+||...|.|++|+|||+.|
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~----~l~tGsGD~TvR~WD--------~~TeTp~~t~KgH~~WVlcvawsPDgk~i 172 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGS----RLVTGSGDTTVRLWD--------LDTETPLFTCKGHKNWVLCVAWSPDGKKI 172 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCc----eEEecCCCceEEeec--------cCCCCcceeecCCccEEEEEEECCCcchh
Confidence 445567899999999999999544 344688999999999 45567899999999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCceEEE-EeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC-------EEEEEeC
Q 041206 112 YSGSRDGRVSVWDRDSGRCVNV-ITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND-------LLFAGSE 183 (371)
Q Consensus 112 ~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~-------~l~~~~~ 183 (371)
|||+.||+|++||..+|+++.. +.. |...|++++|.|- +|++++.
T Consensus 173 ASG~~dg~I~lwdpktg~~~g~~l~g---------------------------H~K~It~Lawep~hl~p~~r~las~sk 225 (480)
T KOG0271|consen 173 ASGSKDGSIRLWDPKTGQQIGRALRG---------------------------HKKWITALAWEPLHLVPPCRRLASSSK 225 (480)
T ss_pred hccccCCeEEEecCCCCCcccccccC---------------------------cccceeEEeecccccCCCccceecccC
Confidence 9999999999999999987643 332 5567999999764 8999999
Q ss_pred CCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEE
Q 041206 184 GGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSL 262 (371)
Q Consensus 184 dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 262 (371)
||.|+|||+..+ .++..+.+|. +|+|+.|-.+|.+++| +.|++|++|+...|++...+++|...|+.+
T Consensus 226 Dg~vrIWd~~~~----~~~~~lsgHT~~VTCvrwGG~gliySg-------S~DrtIkvw~a~dG~~~r~lkGHahwvN~l 294 (480)
T KOG0271|consen 226 DGSVRIWDTKLG----TCVRTLSGHTASVTCVRWGGEGLIYSG-------SQDRTIKVWRALDGKLCRELKGHAHWVNHL 294 (480)
T ss_pred CCCEEEEEccCc----eEEEEeccCccceEEEEEcCCceEEec-------CCCceEEEEEccchhHHHhhcccchheeee
Confidence 999999999998 8999999999 9999999999999999 999999999999999999999999999999
Q ss_pred EEc-------------CC-------------------------eEEEEeCCCcEEEEEccCCC-----CcceecceEEEE
Q 041206 263 LFW-------------DE-------------------------YLFSSSLDETIKIWLYTHTK-----NNAELSSLFGML 299 (371)
Q Consensus 263 ~~~-------------~~-------------------------~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~ 299 (371)
+.+ ++ .|++|+.|.++.+|+-.... ..++..-+..+.
T Consensus 295 alsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~ 374 (480)
T KOG0271|consen 295 ALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVS 374 (480)
T ss_pred eccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEE
Confidence 876 23 39999999999999954433 234445566677
Q ss_pred ecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccccee
Q 041206 300 DAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 300 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~ 367 (371)
++|+++++++++.|..|++||.++++.+..+. |-..|+.++|+.|. +|++|+.|.++++|++++.++.
T Consensus 375 fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 375 FSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLK 444 (480)
T ss_pred ECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeec
Confidence 78888899999999999999999999999998 78999999999999 9999999999999999987654
No 3
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.1e-40 Score=262.46 Aligned_cols=264 Identities=19% Similarity=0.331 Sum_probs=236.8
Q ss_pred ceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCe---eEEEeecCCEEEEe-cCCcEEEE
Q 041206 86 LATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAE---IGCLISEGSWVFLG-LPNAVKSW 161 (371)
Q Consensus 86 ~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~i~~~ 161 (371)
.+..++|+||.+.|.++.|++|.++++|+|.||.+.|||.-+...+..++.+.. ..++.|.+++++++ .|+...+|
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence 345689999999999999999999999999999999999999998888887655 23445678888884 58888888
Q ss_pred EeCCC-----------------CeeEEEEeCC-EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecC-Cce
Q 041206 162 RVNAA-----------------SVNALVVNND-LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSN-DTR 221 (371)
Q Consensus 162 ~~~~~-----------------~v~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~-~~~ 221 (371)
++.+. -+.|+.|-++ .|++++.|.+..+||++++ +....|.+|. .|.++.++| +++
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g----~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETG----QQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccc----eEEEEecCCcccEEEEecCCCCCC
Confidence 87633 5778888878 9999999999999999999 8999999999 999999999 665
Q ss_pred -eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC------ccee
Q 041206 222 -WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN------NAEL 292 (371)
Q Consensus 222 -l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~------~~~~ 292 (371)
+++| +.|+..++||++.+.++++|.+|...|+++.|. +.-+++|+.|++.|+||++..++ ....
T Consensus 201 tFvSg-------~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~ 273 (343)
T KOG0286|consen 201 TFVSG-------GCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSII 273 (343)
T ss_pred eEEec-------ccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCccc
Confidence 9999 999999999999999999999999999999998 67999999999999999988653 4455
Q ss_pred cceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEE
Q 041206 293 SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWK 360 (371)
Q Consensus 293 ~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~ 360 (371)
..+..+.++..+++|++|..|.++.+||.-.++.+..+. |.+.|.++..+||| .+++|+.|..++||.
T Consensus 274 ~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 274 CGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 678888888889899999999999999999999888887 78999999999999 999999999999994
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.3e-42 Score=282.83 Aligned_cols=271 Identities=15% Similarity=0.211 Sum_probs=233.7
Q ss_pred eeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCC--CCEEEEEeCC
Q 041206 40 MFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSG--SNKLYSGSRD 117 (371)
Q Consensus 40 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~--~~~l~s~~~d 117 (371)
+.+..|....|+++.. ...+++-.+..++|+ .+....+++|+||+..|.++.|+|. +..+|||+.|
T Consensus 173 gd~rPis~~~fS~ds~----~laT~swsG~~kvW~--------~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~D 240 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSK----HLATGSWSGLVKVWS--------VPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASAD 240 (459)
T ss_pred cCCCcceeeEeecCCC----eEEEeecCCceeEee--------cCCcceeEEEeccccceeeEEEccCCCccceeeeccC
Confidence 3344455555666433 334567778899999 5566999999999999999999995 6789999999
Q ss_pred CcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCC
Q 041206 118 GRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVWKGTFV 195 (371)
Q Consensus 118 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~ 195 (371)
|++++|++.+...+..+.. |...|..++|+|+ +|++++.|.+-++||++++
T Consensus 241 gtvklw~~~~e~~l~~l~g---------------------------H~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk 293 (459)
T KOG0272|consen 241 GTVKLWKLSQETPLQDLEG---------------------------HLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK 293 (459)
T ss_pred CceeeeccCCCcchhhhhc---------------------------chhhheeeeecCCCceeeecccccchhhcccccc
Confidence 9999999998888888776 3346999999999 9999999999999999998
Q ss_pred CCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEE
Q 041206 196 ANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFS 271 (371)
Q Consensus 196 ~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s 271 (371)
..+....+|. .|.+++|.+||. +++| +.|..-+|||+++++++..+.+|..+|.+|+|+ |..|+|
T Consensus 294 ----~ElL~QEGHs~~v~~iaf~~DGSL~~tG-------GlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lAT 362 (459)
T KOG0272|consen 294 ----SELLLQEGHSKGVFSIAFQPDGSLAATG-------GLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLAT 362 (459)
T ss_pred ----hhhHhhcccccccceeEecCCCceeecc-------CccchhheeecccCcEEEEecccccceeeEeECCCceEEee
Confidence 7777889999 999999999997 6888 999999999999999999999999999999999 568999
Q ss_pred EeCCCcEEEEEccCCCCc----ceecceEEE-EecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC
Q 041206 272 SSLDETIKIWLYTHTKNN----AELSSLFGM-LDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG 345 (371)
Q Consensus 272 ~~~dg~i~iwd~~~~~~~----~~~~~~~~~-~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~ 345 (371)
||.|++++|||++..... .+.+-++.+ +.+..+.+|++++.|+++++|..+++.++..+. |.+.|.+++++||+
T Consensus 363 gs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~ 442 (459)
T KOG0272|consen 363 GSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDS 442 (459)
T ss_pred cCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCC
Confidence 999999999999887652 222233333 444577899999999999999999999999888 68999999999999
Q ss_pred -eEEeeCCCCcEEEEE
Q 041206 346 -LFFPGDASGSVGVWK 360 (371)
Q Consensus 346 -~l~~~~~dg~i~iw~ 360 (371)
.+++++.|.++++|.
T Consensus 443 ~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 443 QAIATSSFDRTIKLWR 458 (459)
T ss_pred ceEEEeccCceeeecc
Confidence 999999999999995
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-39 Score=251.81 Aligned_cols=285 Identities=21% Similarity=0.276 Sum_probs=240.0
Q ss_pred ceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEE
Q 041206 32 GRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKL 111 (371)
Q Consensus 32 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 111 (371)
..+...+++|.+.|+.++..+..+ ......+.|+.+-.|++..+ ..+-+.+++.|+||+..|..+..++|+++.
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~---~~l~sasrDk~ii~W~L~~d---d~~~G~~~r~~~GHsH~v~dv~~s~dg~~a 78 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNS---DILVSASRDKTIIVWKLTSD---DIKYGVPVRRLTGHSHFVSDVVLSSDGNFA 78 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCC---ceEEEcccceEEEEEEeccC---ccccCceeeeeeccceEecceEEccCCceE
Confidence 345667899999999999877533 23445789999999997766 455678899999999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEE
Q 041206 112 YSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISV 189 (371)
Q Consensus 112 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~i 189 (371)
++++.|+++++||+.+++..+.|.. |+..|.+++++++ .+++|+.|.+|++
T Consensus 79 lS~swD~~lrlWDl~~g~~t~~f~G---------------------------H~~dVlsva~s~dn~qivSGSrDkTikl 131 (315)
T KOG0279|consen 79 LSASWDGTLRLWDLATGESTRRFVG---------------------------HTKDVLSVAFSTDNRQIVSGSRDKTIKL 131 (315)
T ss_pred EeccccceEEEEEecCCcEEEEEEe---------------------------cCCceEEEEecCCCceeecCCCcceeee
Confidence 9999999999999999988887775 5557999999998 9999999999999
Q ss_pred EeccCCCCcceeeEEEecC--c-ceEEEEecCCc---eeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEE
Q 041206 190 WKGTFVANPFKQVASIRAP--L-WFCSLSSSNDT---RWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLL 263 (371)
Q Consensus 190 wd~~~~~~~~~~~~~~~~~--~-~v~~~~~~~~~---~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 263 (371)
|+.... +..++... . .|.|+.|+|.. .++++ +.|++|++||+++.+....+.+|++.++.++
T Consensus 132 wnt~g~-----ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~-------s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~ 199 (315)
T KOG0279|consen 132 WNTLGV-----CKYTIHEDSHREWVSCVRFSPNESNPIIVSA-------SWDKTVKVWNLRNCQLRTTFIGHSGYVNTVT 199 (315)
T ss_pred eeeccc-----EEEEEecCCCcCcEEEEEEcCCCCCcEEEEc-------cCCceEEEEccCCcchhhccccccccEEEEE
Confidence 999875 33344333 5 99999999974 28899 9999999999999999999999999999999
Q ss_pred Ec--CCeEEEEeCCCcEEEEEccCCCC---cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecC------
Q 041206 264 FW--DEYLFSSSLDETIKIWLYTHTKN---NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFS------ 332 (371)
Q Consensus 264 ~~--~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------ 332 (371)
++ |...++|+.||.+.+||++..++ ......+..+.+.|+...|+. ..+..|+|||+.+...+.++..
T Consensus 200 vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~-at~~sIkIwdl~~~~~v~~l~~d~~g~s 278 (315)
T KOG0279|consen 200 VSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCA-ATATSIKIWDLESKAVVEELKLDGIGPS 278 (315)
T ss_pred ECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEee-ccCCceEEEeccchhhhhhccccccccc
Confidence 99 78999999999999999998876 233456677777887745544 4555699999999988877652
Q ss_pred ----CceEEEEEeCCCC-eEEeeCCCCcEEEEEcc
Q 041206 333 ----RREVEVDQIGPAG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 333 ----~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~ 362 (371)
.....+++|++|| .|++|..|+.|++|.+.
T Consensus 279 ~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 279 SKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 2345788999999 99999999999999985
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7e-40 Score=269.78 Aligned_cols=259 Identities=15% Similarity=0.203 Sum_probs=227.4
Q ss_pred ccCCCCceeeccCcc-------cccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCc
Q 041206 14 KHSEGGETMMSDDDD-------LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSL 86 (371)
Q Consensus 14 ~~sp~g~~l~~~~~d-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (371)
.||+|++.+|+++.+ .+..+.+..|.+|...|.++.|+|... .-...+++.|+.+++|++ .+-
T Consensus 182 ~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~--~~~lat~s~Dgtvklw~~--------~~e 251 (459)
T KOG0272|consen 182 SFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDS--DLNLATASADGTVKLWKL--------SQE 251 (459)
T ss_pred EeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCC--ccceeeeccCCceeeecc--------CCC
Confidence 489999999999987 556889999999999999999999531 113345788999999993 344
Q ss_pred eeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCC
Q 041206 87 ATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAA 166 (371)
Q Consensus 87 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 166 (371)
.++..|.||...|..++|+|+|++|+|++.|.+-++||++++..+..... |+.
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEG---------------------------Hs~ 304 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEG---------------------------HSK 304 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcc---------------------------ccc
Confidence 88999999999999999999999999999999999999999876654443 556
Q ss_pred CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEE
Q 041206 167 SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWN 242 (371)
Q Consensus 167 ~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd 242 (371)
.|.+++|.++ .+++|+.|..-+|||++++ .++..+.+|. +|.+++|+|+|. +++| +.|++++|||
T Consensus 305 ~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg----r~im~L~gH~k~I~~V~fsPNGy~lATg-------s~Dnt~kVWD 373 (459)
T KOG0272|consen 305 GVFSIAFQPDGSLAATGGLDSLGRVWDLRTG----RCIMFLAGHIKEILSVAFSPNGYHLATG-------SSDNTCKVWD 373 (459)
T ss_pred ccceeEecCCCceeeccCccchhheeecccC----cEEEEecccccceeeEeECCCceEEeec-------CCCCcEEEee
Confidence 7999999999 9999999999999999999 8999999999 999999999997 9999 9999999999
Q ss_pred CCCceEEEEeecCCCcEEEEEEc---CCeEEEEeCCCcEEEEEccCCCC----cceecceEEEEecCCCCEEEEecCCCe
Q 041206 243 LDNLECVQTLKGHSDTVTSLLFW---DEYLFSSSLDETIKIWLYTHTKN----NAELSSLFGMLDAEAKPVLFSSGKDSA 315 (371)
Q Consensus 243 ~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~d~~ 315 (371)
++..+.++++.+|.+-|+.|.|+ +.+|+|++.|+++++|.-+.... .++-..+.++-..+++.++++++.|++
T Consensus 374 LR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT 453 (459)
T KOG0272|consen 374 LRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRT 453 (459)
T ss_pred ecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCce
Confidence 99999999999999999999998 67999999999999999666553 344455666666667779999999999
Q ss_pred EEEEE
Q 041206 316 IRLYE 320 (371)
Q Consensus 316 i~iwd 320 (371)
+++|.
T Consensus 454 ~KLW~ 458 (459)
T KOG0272|consen 454 IKLWR 458 (459)
T ss_pred eeecc
Confidence 99995
No 7
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-37 Score=271.69 Aligned_cols=336 Identities=19% Similarity=0.265 Sum_probs=256.1
Q ss_pred cccCCCCceeeccCcc-------cccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCC
Q 041206 13 HKHSEGGETMMSDDDD-------LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNS 85 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (371)
..|+|.|-.||+++.| ...+...+.|+||.+-|.++.|+|.... -...+|..+..+++|+ ....
T Consensus 111 ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~--~lL~sg~~D~~v~vwn-------l~~~ 181 (775)
T KOG0319|consen 111 MAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNR--WLLASGATDGTVRVWN-------LNDK 181 (775)
T ss_pred EEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccch--hheeecCCCceEEEEE-------cccC
Confidence 4589999999999988 4468899999999999999999986553 3456689999999999 3333
Q ss_pred ceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEee--c-----CCEEEE-ecCCc
Q 041206 86 LATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLIS--E-----GSWVFL-GLPNA 157 (371)
Q Consensus 86 ~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~-~~~~~ 157 (371)
..++.+++.|.+.|++++|++|+.-++++++|..+.+||+.+.+..++++.-+.+..... + +.++++ |.++.
T Consensus 182 ~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~ 261 (775)
T KOG0319|consen 182 RTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGV 261 (775)
T ss_pred chHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCce
Confidence 447899999999999999999999999999999999999865555444433222222211 0 112211 22333
Q ss_pred EEEEEeCCC-----------------------------------------------------------------------
Q 041206 158 VKSWRVNAA----------------------------------------------------------------------- 166 (371)
Q Consensus 158 i~~~~~~~~----------------------------------------------------------------------- 166 (371)
+++||..++
T Consensus 262 ~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laV 341 (775)
T KOG0319|consen 262 VQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAV 341 (775)
T ss_pred EEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEE
Confidence 333333222
Q ss_pred -----------------------------------------------------------------------CeeEEEEeC
Q 041206 167 -----------------------------------------------------------------------SVNALVVNN 175 (371)
Q Consensus 167 -----------------------------------------------------------------------~v~~~~~~~ 175 (371)
.|.+++++.
T Consensus 342 ATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~ 421 (775)
T KOG0319|consen 342 ATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSK 421 (775)
T ss_pred EeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecc
Confidence 455555543
Q ss_pred C---EEEEEeCCCeEEEEeccCCCCcc-eee----EEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCC
Q 041206 176 D---LLFAGSEGGVISVWKGTFVANPF-KQV----ASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDN 245 (371)
Q Consensus 176 ~---~l~~~~~dg~v~iwd~~~~~~~~-~~~----~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~ 245 (371)
. ++++++.|+++++|++...+... ... .+...|. .|+|++++|+.+ +++| +.|.+.+||+++.
T Consensus 422 ~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~-------SqDktaKiW~le~ 494 (775)
T KOG0319|consen 422 LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATG-------SQDKTAKIWDLEQ 494 (775)
T ss_pred cCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEec-------ccccceeeecccC
Confidence 3 66666666666666665521110 111 1334677 999999999887 8899 9999999999999
Q ss_pred ceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCc----ceecceEEEEecCCCCEEEEecCCCeEEEE
Q 041206 246 LECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNN----AELSSLFGMLDAEAKPVLFSSGKDSAIRLY 319 (371)
Q Consensus 246 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 319 (371)
.+.+.++.+|...|.++.|+ ++.++|+|.|++|+||.+...... ++...+..+.+-.++..|++++.||.|++|
T Consensus 495 ~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlW 574 (775)
T KOG0319|consen 495 LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLW 574 (775)
T ss_pred ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEE
Confidence 99999999999999999999 569999999999999998887653 333445555555666699999999999999
Q ss_pred EcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccc
Q 041206 320 ELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 320 d~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
++++.++...+. |...|++++.+|.. .++||+.||.|.+|.=.+.
T Consensus 575 nikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 575 NIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred eccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 999999999988 78999999999999 9999999999999975443
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-35 Score=260.29 Aligned_cols=333 Identities=19% Similarity=0.279 Sum_probs=258.6
Q ss_pred ccCCCCceeeccCcc-------cccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCc
Q 041206 14 KHSEGGETMMSDDDD-------LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSL 86 (371)
Q Consensus 14 ~~sp~g~~l~~~~~d-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (371)
..||+|.+|.+..++ +..-..++.+ ....+|.++.|+|...+++ -+..+.+.+|..-...+...+..
T Consensus 62 alSp~g~lllavdE~g~~~lvs~~~r~Vlh~f-~fk~~v~~i~fSPng~~fa-----v~~gn~lqiw~~P~~~~~~~~pF 135 (893)
T KOG0291|consen 62 ALSPDGTLLLAVDERGRALLVSLLSRSVLHRF-NFKRGVGAIKFSPNGKFFA-----VGCGNLLQIWHAPGEIKNEFNPF 135 (893)
T ss_pred EeCCCceEEEEEcCCCcEEEEecccceeeEEE-eecCccceEEECCCCcEEE-----EEecceeEEEecCcchhcccCcc
Confidence 468998877766655 1122233333 3578999999999877665 34557899999544444455667
Q ss_pred eeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe--C-CCeeE-EEee-c-CCEEEEecCCcEEE
Q 041206 87 ATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVIT--N-GAEIG-CLIS-E-GSWVFLGLPNAVKS 160 (371)
Q Consensus 87 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~-~~~~~-~~~~-~-~~~~~~~~~~~i~~ 160 (371)
.+.+++.||-..|+++.|+.|.++|++||.|-++++|+++..+...... . ..++. |+.. + ..++.++.||.+.+
T Consensus 136 vl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~ 215 (893)
T KOG0291|consen 136 VLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFV 215 (893)
T ss_pred eEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEE
Confidence 7889999999999999999999999999999999999998776543333 2 23333 3332 2 33444577888888
Q ss_pred EEeCCC--------------------------------------------------------------------------
Q 041206 161 WRVNAA-------------------------------------------------------------------------- 166 (371)
Q Consensus 161 ~~~~~~-------------------------------------------------------------------------- 166 (371)
|.....
T Consensus 216 W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP 295 (893)
T KOG0291|consen 216 WTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELP 295 (893)
T ss_pred EEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecC
Confidence 876510
Q ss_pred -------------CeeEEEEe--CCEEEEEeCC-CeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccc
Q 041206 167 -------------SVNALVVN--NDLLFAGSEG-GVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEA 228 (371)
Q Consensus 167 -------------~v~~~~~~--~~~l~~~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~ 228 (371)
+|..++|+ .++++.|+.. |.+-||+.... ..+...++|. .+++++++|||+ +++|
T Consensus 296 ~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE----sYVlKQQgH~~~i~~l~YSpDgq~iaTG--- 368 (893)
T KOG0291|consen 296 DFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE----SYVLKQQGHSDRITSLAYSPDGQLIATG--- 368 (893)
T ss_pred CceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc----ceeeeccccccceeeEEECCCCcEEEec---
Confidence 45566666 3466666654 77888888776 6777888999 999999999997 8999
Q ss_pred eeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC------cceecceEEEEe
Q 041206 229 AVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN------NAELSSLFGMLD 300 (371)
Q Consensus 229 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~ 300 (371)
+.||.|+|||..++-|+.+|..|+..|+.+.|. ++.+++.|.||+|+.||+...+. +.+. ...++..
T Consensus 369 ----~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~-Qfscvav 443 (893)
T KOG0291|consen 369 ----AEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI-QFSCVAV 443 (893)
T ss_pred ----cCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCce-eeeEEEE
Confidence 999999999999999999999999999999998 89999999999999999766553 2222 3344445
Q ss_pred cCCCCEEEEecCCC-eEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccc
Q 041206 301 AEAKPVLFSSGKDS-AIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 301 ~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
.+.+.++++|+.|. .|.+|++++|+++..+. |.+||.+++|+|++ .|+++|.|.+|++|++-..
T Consensus 444 D~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 444 DPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred cCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence 55565888888775 59999999999998887 78999999999999 9999999999999998654
No 9
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.8e-36 Score=263.59 Aligned_cols=305 Identities=18% Similarity=0.289 Sum_probs=251.6
Q ss_pred cCCCCceeeccCcc-------cccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCce
Q 041206 15 HSEGGETMMSDDDD-------LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLA 87 (371)
Q Consensus 15 ~sp~g~~l~~~~~d-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (371)
|.|.-..||++-.. ++.-.+++.+..-...|..++++..+.|++-.|. .-+.+-+|. .+...
T Consensus 273 fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~---klgQLlVwe--------WqsEs 341 (893)
T KOG0291|consen 273 FHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS---KLGQLLVWE--------WQSES 341 (893)
T ss_pred ccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC---ccceEEEEE--------eeccc
Confidence 56666677766443 6678888999888899999999999999875544 345566666 23446
Q ss_pred eeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCC
Q 041206 88 TLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAAS 167 (371)
Q Consensus 88 ~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 167 (371)
-+...+||...+++++++|||+++|||+.||.|+|||..++-|..++.. |+..
T Consensus 342 YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte---------------------------Hts~ 394 (893)
T KOG0291|consen 342 YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE---------------------------HTSG 394 (893)
T ss_pred eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEecc---------------------------CCCc
Confidence 6888999999999999999999999999999999999999999999886 5667
Q ss_pred eeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc--ceEEEEecCCcee-EecccceeeeeCC-CeEEEE
Q 041206 168 VNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL--WFCSLSSSNDTRW-NSKEEAAVFEFCG-HTTRTW 241 (371)
Q Consensus 168 v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~l-~~~~~~~~~~~~d-g~i~iw 241 (371)
|+.+.|... .+++.+-||+|+.||+... +..+++..+. ...|++..|.|.+ .+| +.| -.|++|
T Consensus 395 Vt~v~f~~~g~~llssSLDGtVRAwDlkRY----rNfRTft~P~p~QfscvavD~sGelV~AG-------~~d~F~IfvW 463 (893)
T KOG0291|consen 395 VTAVQFTARGNVLLSSSLDGTVRAWDLKRY----RNFRTFTSPEPIQFSCVAVDPSGELVCAG-------AQDSFEIFVW 463 (893)
T ss_pred eEEEEEEecCCEEEEeecCCeEEeeeeccc----ceeeeecCCCceeeeEEEEcCCCCEEEee-------ccceEEEEEE
Confidence 999999866 8999999999999999998 7888998887 7889999999974 455 555 379999
Q ss_pred ECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCC----CcceecceEEEEecCCCCEEEEecCCCe
Q 041206 242 NLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTK----NNAELSSLFGMLDAEAKPVLFSSGKDSA 315 (371)
Q Consensus 242 d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 315 (371)
++++|+.+-.+.+|.+||.+++|+ ++.|+++|.|.+||+||+-... ......-+..+.+.|++.-++++.-||.
T Consensus 464 S~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgq 543 (893)
T KOG0291|consen 464 SVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQ 543 (893)
T ss_pred EeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecce
Confidence 999999999999999999999998 7899999999999999964432 1222234445566666669999999999
Q ss_pred EEEEEcCCcceeeeecC---------------------CceEEEEEeCCCC-eEEeeCCCCcEEEEEccccceec
Q 041206 316 IRLYELPSFKLRARIFS---------------------RREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 316 i~iwd~~~~~~~~~~~~---------------------~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
|.+||.+.+..+..+.+ ....+.+++++|| .+++|+....|++|++.++-+.+
T Consensus 544 Itf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllk 618 (893)
T KOG0291|consen 544 ITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLK 618 (893)
T ss_pred EEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheee
Confidence 99999988766543321 3678999999999 99999999999999999876544
No 10
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3e-35 Score=248.83 Aligned_cols=311 Identities=13% Similarity=0.178 Sum_probs=244.5
Q ss_pred ceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEE
Q 041206 32 GRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKL 111 (371)
Q Consensus 32 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 111 (371)
|.-.-++.||+..|.++++.|.+.|.. .+++.|..+..+. .+.++.-.+++.|..-|+|+.|+|||+++
T Consensus 137 G~SvGei~GhSr~ins~~~KpsRPfRi---~T~sdDn~v~ffe--------GPPFKFk~s~r~HskFV~~VRysPDG~~F 205 (603)
T KOG0318|consen 137 GNSVGEITGHSRRINSVDFKPSRPFRI---ATGSDDNTVAFFE--------GPPFKFKSSFREHSKFVNCVRYSPDGSRF 205 (603)
T ss_pred CCccceeeccceeEeeeeccCCCceEE---EeccCCCeEEEee--------CCCeeeeecccccccceeeEEECCCCCeE
Confidence 444566889999999999999998854 3467888899888 67789999999999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCceEEEEeC----CCeeEEEee--cCCEEEE-ecCCcEEEEEeCCCC--------------eeE
Q 041206 112 YSGSRDGRVSVWDRDSGRCVNVITN----GAEIGCLIS--EGSWVFL-GLPNAVKSWRVNAAS--------------VNA 170 (371)
Q Consensus 112 ~s~~~dg~v~iwd~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~-~~~~~i~~~~~~~~~--------------v~~ 170 (371)
||++.||+|.+||-.+|+.+..+.. .+.+.++.+ ++..+++ +.|.++++||+.+.. -..
T Consensus 206 at~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG 285 (603)
T KOG0318|consen 206 ATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVG 285 (603)
T ss_pred EEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEE
Confidence 9999999999999999999999873 455777764 5555554 789999999998872 234
Q ss_pred EEEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceE
Q 041206 171 LVVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLEC 248 (371)
Q Consensus 171 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~ 248 (371)
+-|..+.|++.+.+|.|.+++...+ .++..+.+|+ .|+++..+|+++ +++| +.||.|.-||..++..
T Consensus 286 ~lWqkd~lItVSl~G~in~ln~~d~----~~~~~i~GHnK~ITaLtv~~d~~~i~Sg-------syDG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 286 CLWQKDHLITVSLSGTINYLNPSDP----SVLKVISGHNKSITALTVSPDGKTIYSG-------SYDGHINSWDSGSGTS 354 (603)
T ss_pred EEEeCCeEEEEEcCcEEEEecccCC----ChhheecccccceeEEEEcCCCCEEEee-------ccCceEEEEecCCccc
Confidence 4556669999999999999999998 7889999999 999999999997 9999 9999999999876433
Q ss_pred EEEe-ecCCCcEEEEE----------------------------------------------------------------
Q 041206 249 VQTL-KGHSDTVTSLL---------------------------------------------------------------- 263 (371)
Q Consensus 249 ~~~~-~~~~~~v~~~~---------------------------------------------------------------- 263 (371)
-+.. ++|...|.+++
T Consensus 355 ~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~ 434 (603)
T KOG0318|consen 355 DRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQ 434 (603)
T ss_pred cccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecC
Confidence 2111 23333333333
Q ss_pred ----------------Ec--CCeEEEEeCCCcEEEEEccCCCC------cceecceEEEEecCCCCEEEEecCCCeEEEE
Q 041206 264 ----------------FW--DEYLFSSSLDETIKIWLYTHTKN------NAELSSLFGMLDAEAKPVLFSSGKDSAIRLY 319 (371)
Q Consensus 264 ----------------~~--~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 319 (371)
++ ++.++.|+.|+++++|.+..... ..+...++.+.+++++.+|+++...+.+.+|
T Consensus 435 ~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~y 514 (603)
T KOG0318|consen 435 TKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLY 514 (603)
T ss_pred CcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEE
Confidence 33 34555666666666666544221 2233456666777777799999999999999
Q ss_pred EcCCcceeeee--cCCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccc
Q 041206 320 ELPSFKLRARI--FSRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 320 d~~~~~~~~~~--~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
|+.+.+..... +|...|.+++|+|++ ++|||+-|-.|.||+++.+
T Consensus 515 d~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 515 DVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred EcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccCh
Confidence 98887653322 389999999999999 9999999999999999865
No 11
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.5e-35 Score=226.97 Aligned_cols=285 Identities=23% Similarity=0.284 Sum_probs=229.6
Q ss_pred ceeEEEEEeeccceeeeeeeecc-eeeccceeeCCccceEEEEEeccCCCCccCCceeeEee-eCccCCeEEEEEcCCCC
Q 041206 32 GRAEEREEMFGFGLAAMAIRVCN-NWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKL-NGHKKAVTNVGLPSGSN 109 (371)
Q Consensus 32 ~~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~~~~~~~~~ 109 (371)
..+++.+++|.+++..++++|.. . ...+++.++.+++|+.+. ..+..+...+ .+|+..|++++|+|.|+
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~----ilAscg~Dk~vriw~~~~-----~~s~~ck~vld~~hkrsVRsvAwsp~g~ 74 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGV----ILASCGTDKAVRIWSTSS-----GDSWTCKTVLDDGHKRSVRSVAWSPHGR 74 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCce----EEEeecCCceEEEEecCC-----CCcEEEEEeccccchheeeeeeecCCCc
Confidence 45678899999999999999963 2 233578999999999431 1235555555 47999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCC--ceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCC
Q 041206 110 KLYSGSRDGRVSVWDRDSG--RCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGG 185 (371)
Q Consensus 110 ~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg 185 (371)
+||+||.|.++.||.-..+ +++.++.. |..+|.|++|+++ +|++++.|.
T Consensus 75 ~La~aSFD~t~~Iw~k~~~efecv~~lEG---------------------------HEnEVK~Vaws~sG~~LATCSRDK 127 (312)
T KOG0645|consen 75 YLASASFDATVVIWKKEDGEFECVATLEG---------------------------HENEVKCVAWSASGNYLATCSRDK 127 (312)
T ss_pred EEEEeeccceEEEeecCCCceeEEeeeec---------------------------cccceeEEEEcCCCCEEEEeeCCC
Confidence 9999999999999987655 45555554 5557999999988 999999999
Q ss_pred eEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc-eeEecccceeeeeCCCeEEEEECC---CceEEEEeecCCCcEE
Q 041206 186 VISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT-RWNSKEEAAVFEFCGHTTRTWNLD---NLECVQTLKGHSDTVT 260 (371)
Q Consensus 186 ~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~l~~~~~~~~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~ 260 (371)
.|.||.+... ..+++...++.|. .|..+.|+|.. .|+++ +.|++|++|+-. ..++++++.+|...|.
T Consensus 128 SVWiWe~ded-dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~-------SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW 199 (312)
T KOG0645|consen 128 SVWIWEIDED-DEFECIAVLQEHTQDVKHVIWHPTEDLLFSC-------SYDNTIKVYRDEDDDDWECVQTLDGHENTVW 199 (312)
T ss_pred eEEEEEecCC-CcEEEEeeeccccccccEEEEcCCcceeEEe-------ccCCeEEEEeecCCCCeeEEEEecCccceEE
Confidence 9999998843 3458899999999 99999999965 58999 999999999876 4578999999999999
Q ss_pred EEEEc--CCeEEEEeCCCcEEEEEccCCCCcceecceEEEEecCCCCEEEEecCCCeEEEEEcCCc------ceeeee--
Q 041206 261 SLLFW--DEYLFSSSLDETIKIWLYTHTKNNAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSF------KLRARI-- 330 (371)
Q Consensus 261 ~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~-- 330 (371)
+++|+ ++.|++++.|++++||.+...-...+...+..+.+. ++ .|++++.|+.|++|.-... +++...
T Consensus 200 ~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~ 277 (312)
T KOG0645|consen 200 SLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWD-NG-VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEG 277 (312)
T ss_pred EEEecCCCceEEEecCCcceEeeeeccCcchhcccceEeeeec-cc-ceEeccCCCEEEEEEecCCCCCchHHHHHhhhc
Confidence 99999 789999999999999996544443333344444555 34 8999999999999976542 122211
Q ss_pred cCCceEEEEEeCCCC--eEEeeCCCCcEEEEEcc
Q 041206 331 FSRREVEVDQIGPAG--LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 331 ~~~~~v~~~~~s~~~--~l~~~~~dg~i~iw~~~ 362 (371)
.|...|++++|.|.. +|++|+.||.|++|.+.
T Consensus 278 aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 278 AHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 256799999999954 99999999999999875
No 12
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.1e-36 Score=236.98 Aligned_cols=279 Identities=16% Similarity=0.246 Sum_probs=237.5
Q ss_pred eeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEE
Q 041206 33 RAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLY 112 (371)
Q Consensus 33 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~ 112 (371)
.++..+.+|...|....|+|.+.++ .+++.|+-|.+|+ .....+-..+++||+++|+.+.|.+|++.++
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~----aSgG~Dr~I~LWn-------v~gdceN~~~lkgHsgAVM~l~~~~d~s~i~ 106 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCF----ASGGSDRAIVLWN-------VYGDCENFWVLKGHSGAVMELHGMRDGSHIL 106 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeE----eecCCcceEEEEe-------ccccccceeeeccccceeEeeeeccCCCEEE
Confidence 4456688999999999999966543 3588999999999 5667788899999999999999999999999
Q ss_pred EEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEe---CCEEEEEeCCCeEEE
Q 041206 113 SGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVN---NDLLFAGSEGGVISV 189 (371)
Q Consensus 113 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~---~~~l~~~~~dg~v~i 189 (371)
+++.|.+|+.||.++|++.+.++.+.. -|+++... +.++.+++.|+++++
T Consensus 107 S~gtDk~v~~wD~~tG~~~rk~k~h~~---------------------------~vNs~~p~rrg~~lv~SgsdD~t~kl 159 (338)
T KOG0265|consen 107 SCGTDKTVRGWDAETGKRIRKHKGHTS---------------------------FVNSLDPSRRGPQLVCSGSDDGTLKL 159 (338)
T ss_pred EecCCceEEEEecccceeeehhccccc---------------------------eeeecCccccCCeEEEecCCCceEEE
Confidence 999999999999999999998886443 36666543 338999999999999
Q ss_pred EeccCCCCcceeeEEEecCcceEEEEecCCc-eeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--C
Q 041206 190 WKGTFVANPFKQVASIRAPLWFCSLSSSNDT-RWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--D 266 (371)
Q Consensus 190 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~ 266 (371)
||+++. ..++++....+++++.|..++ ++++| +-|+.|++||++.+..++.+.+|.++|+.+..+ +
T Consensus 160 ~D~R~k----~~~~t~~~kyqltAv~f~d~s~qv~sg-------gIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~g 228 (338)
T KOG0265|consen 160 WDIRKK----EAIKTFENKYQLTAVGFKDTSDQVISG-------GIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYG 228 (338)
T ss_pred Eeeccc----chhhccccceeEEEEEecccccceeec-------cccCceeeeccccCcceEEeecccCceeeEEeccCC
Confidence 999987 667766655599999999987 59999 999999999999999999999999999999998 7
Q ss_pred CeEEEEeCCCcEEEEEccCCCCcce-e-----------cceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CC
Q 041206 267 EYLFSSSLDETIKIWLYTHTKNNAE-L-----------SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SR 333 (371)
Q Consensus 267 ~~l~s~~~dg~i~iwd~~~~~~~~~-~-----------~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~ 333 (371)
.++.+-+.|.++++||++...+... + ..+..+.++++...+.+|+.|..+++||......+..+. |.
T Consensus 229 s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~ 308 (338)
T KOG0265|consen 229 SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHY 308 (338)
T ss_pred CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcc
Confidence 8999999999999999876554222 1 122234455666689999999999999999988888888 68
Q ss_pred ceEEEEEeCCCC-eEEeeCCCCcEEEEE
Q 041206 334 REVEVDQIGPAG-LFFPGDASGSVGVWK 360 (371)
Q Consensus 334 ~~v~~~~~s~~~-~l~~~~~dg~i~iw~ 360 (371)
+.|++++|+|.. +|.+++.|.+|++=+
T Consensus 309 gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 309 GSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred eeEEEeeecCCCcEEEEeccCceeEeec
Confidence 899999999999 999999999998743
No 13
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1e-35 Score=240.59 Aligned_cols=281 Identities=19% Similarity=0.242 Sum_probs=239.4
Q ss_pred cceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCE
Q 041206 31 KGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNK 110 (371)
Q Consensus 31 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 110 (371)
..++.+.+++|.+.|.++++.|.+-|+. +|+.|+.+++|+ ..++++..++.||...|..+++|+...|
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~----tgs~DrtikIwD--------latg~LkltltGhi~~vr~vavS~rHpY 207 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFA----TGSADRTIKIWD--------LATGQLKLTLTGHIETVRGVAVSKRHPY 207 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEE----ecCCCceeEEEE--------cccCeEEEeecchhheeeeeeecccCce
Confidence 3667788999999999999999877754 578999999999 4677999999999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEE
Q 041206 111 LYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVIS 188 (371)
Q Consensus 111 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~ 188 (371)
|++++.|+.|+.||++..+.++.+.. |-..|+|++..|. .|++|+.|..++
T Consensus 208 lFs~gedk~VKCwDLe~nkvIR~YhG---------------------------HlS~V~~L~lhPTldvl~t~grDst~R 260 (460)
T KOG0285|consen 208 LFSAGEDKQVKCWDLEYNKVIRHYHG---------------------------HLSGVYCLDLHPTLDVLVTGGRDSTIR 260 (460)
T ss_pred EEEecCCCeeEEEechhhhhHHHhcc---------------------------ccceeEEEeccccceeEEecCCcceEE
Confidence 99999999999999999998887765 4446999999988 999999999999
Q ss_pred EEeccCCCCcceeeEEEecCc-ceEEEEecC-CceeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEcC
Q 041206 189 VWKGTFVANPFKQVASIRAPL-WFCSLSSSN-DTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWD 266 (371)
Q Consensus 189 iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~-~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 266 (371)
+||+++. ..+..+.+|. +|.++.+.| |.++++| +.|++|++||++.++...++..|...|.+++.++
T Consensus 261 vWDiRtr----~~V~~l~GH~~~V~~V~~~~~dpqvit~-------S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP 329 (460)
T KOG0285|consen 261 VWDIRTR----ASVHVLSGHTNPVASVMCQPTDPQVITG-------SHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHP 329 (460)
T ss_pred Eeeeccc----ceEEEecCCCCcceeEEeecCCCceEEe-------cCCceEEEeeeccCceeEeeecccceeeEEecCC
Confidence 9999998 8899999999 999999998 4579999 9999999999999999999999999999999994
Q ss_pred --CeEEEEeCCCcEEEEEccCCCCcc----eecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec---------
Q 041206 267 --EYLFSSSLDETIKIWLYTHTKNNA----ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF--------- 331 (371)
Q Consensus 267 --~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------- 331 (371)
..+++++.| .|+-|++..+.-.. +...+..+....++ ++++|+.+|.+.+||.+++-..+...
T Consensus 330 ~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~ 407 (460)
T KOG0285|consen 330 KENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLE 407 (460)
T ss_pred chhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccc
Confidence 466777666 49999977655322 22223333444444 89999999999999999876544432
Q ss_pred CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccc
Q 041206 332 SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 332 ~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~ 363 (371)
....|.+.+|...| .|++|..|.+|++|.-..
T Consensus 408 sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 408 SEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 25688999999999 999999999999998654
No 14
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.8e-36 Score=243.86 Aligned_cols=243 Identities=20% Similarity=0.364 Sum_probs=215.4
Q ss_pred CCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEe
Q 041206 84 NSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRV 163 (371)
Q Consensus 84 ~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 163 (371)
..+++.+.++||.+.|.|+++.|..++|+||+.|++++|||+.+|++..++..+-.
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~------------------------ 194 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIE------------------------ 194 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhh------------------------
Confidence 35678899999999999999999999999999999999999999999998885332
Q ss_pred CCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEE
Q 041206 164 NAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTR 239 (371)
Q Consensus 164 ~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~ 239 (371)
.|..+++++. ++++++.|+.|+.||++.. +.++.+.+|- .|.|++.+|.-. +++| +.|.+++
T Consensus 195 ---~vr~vavS~rHpYlFs~gedk~VKCwDLe~n----kvIR~YhGHlS~V~~L~lhPTldvl~t~-------grDst~R 260 (460)
T KOG0285|consen 195 ---TVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN----KVIRHYHGHLSGVYCLDLHPTLDVLVTG-------GRDSTIR 260 (460)
T ss_pred ---eeeeeeecccCceEEEecCCCeeEEEechhh----hhHHHhccccceeEEEeccccceeEEec-------CCcceEE
Confidence 4889999988 9999999999999999998 8899999999 999999999654 8999 9999999
Q ss_pred EEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcc----eecceEEEEecCCCCEEEEecCC
Q 041206 240 TWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNA----ELSSLFGMLDAEAKPVLFSSGKD 313 (371)
Q Consensus 240 iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d 313 (371)
+||+++...+..+.+|..+|.++.+. +..+++||.|++|++||++.++... +-..+.++...+....+++++.|
T Consensus 261 vWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d 340 (460)
T KOG0285|consen 261 VWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD 340 (460)
T ss_pred EeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc
Confidence 99999999999999999999999998 7899999999999999998877422 22344555566666678888876
Q ss_pred CeEEEEEcCCcceeeeec-CCceEEEEEeCCCCeEEeeCCCCcEEEEEccccc
Q 041206 314 SAIRLYELPSFKLRARIF-SRREVEVDQIGPAGLFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 314 ~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~~~~ 365 (371)
.|+-|++..+..+..+. +...+++++...|+.+++|+++|.+.+||++++.
T Consensus 341 -nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 341 -NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGH 392 (460)
T ss_pred -cceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCc
Confidence 59999999999888866 5788999999999999999999999999998863
No 15
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-36 Score=244.04 Aligned_cols=283 Identities=17% Similarity=0.249 Sum_probs=249.1
Q ss_pred cccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCC
Q 041206 29 LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGS 108 (371)
Q Consensus 29 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~ 108 (371)
++...+.+.+.+|...|+.+-++|.... .+....+..|++|+ ..++++...|+||++.|..++|+..|
T Consensus 95 ipRp~l~~~l~g~r~~vt~v~~hp~~~~----v~~as~d~tikv~D--------~~tg~~e~~LrGHt~sv~di~~~a~G 162 (406)
T KOG0295|consen 95 IPRPNLVQKLAGHRSSVTRVIFHPSEAL----VVSASEDATIKVFD--------TETGELERSLRGHTDSVFDISFDASG 162 (406)
T ss_pred CCCCCchhhhhccccceeeeeeccCceE----EEEecCCceEEEEE--------ccchhhhhhhhccccceeEEEEecCc
Confidence 4556677888899999999999995553 34456889999999 56778899999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCC-CceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCC
Q 041206 109 NKLYSGSRDGRVSVWDRDS-GRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGG 185 (371)
Q Consensus 109 ~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg 185 (371)
++|++++.|=.+++||.++ .++++....+.. .|.+++|-|. ++++++.|.
T Consensus 163 k~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h---------------------------~vS~V~f~P~gd~ilS~srD~ 215 (406)
T KOG0295|consen 163 KYLATCSSDLSAKLWDFDTFFRCIKSLIGHEH---------------------------GVSSVFFLPLGDHILSCSRDN 215 (406)
T ss_pred cEEEecCCccchhheeHHHHHHHHHHhcCccc---------------------------ceeeEEEEecCCeeeeccccc
Confidence 9999999999999999887 455555544333 4778888776 999999999
Q ss_pred eEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEE
Q 041206 186 VISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLL 263 (371)
Q Consensus 186 ~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 263 (371)
+|+.|++.++ .++.++.+|. .|..+..+.||. ++++ +.|.++++|-+.++++...++.|..+|.+++
T Consensus 216 tik~We~~tg----~cv~t~~~h~ewvr~v~v~~DGti~As~-------s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~ 284 (406)
T KOG0295|consen 216 TIKAWECDTG----YCVKTFPGHSEWVRMVRVNQDGTIIASC-------SNDQTLRVWVVATKQCKAELREHEHPVECIA 284 (406)
T ss_pred ceeEEecccc----eeEEeccCchHhEEEEEecCCeeEEEec-------CCCceEEEEEeccchhhhhhhccccceEEEE
Confidence 9999999999 8999999999 999999999998 7899 9999999999999999999999999999999
Q ss_pred Ec------------C-----CeEEEEeCCCcEEEEEccCCCC----cceecceEEEEecCCCCEEEEecCCCeEEEEEcC
Q 041206 264 FW------------D-----EYLFSSSLDETIKIWLYTHTKN----NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELP 322 (371)
Q Consensus 264 ~~------------~-----~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 322 (371)
|- + .++.+++.|++|++||+.++.. .++.+.++.+.+++++++|+++.+|+++++||++
T Consensus 285 wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 285 WAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK 364 (406)
T ss_pred ecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence 84 2 3899999999999999998875 4455678888889999999999999999999999
Q ss_pred Ccceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEc
Q 041206 323 SFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKW 361 (371)
Q Consensus 323 ~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~ 361 (371)
+.+++..+. |..-|++++|+.+. ++++|+-|..+++|..
T Consensus 365 ~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 365 NLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999988877 68889999999988 9999999999999974
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.2e-35 Score=243.42 Aligned_cols=289 Identities=17% Similarity=0.231 Sum_probs=231.0
Q ss_pred EEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEe--eeC----ccCCeEEEEEcCCCCEE
Q 041206 38 EEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMK--LNG----HKKAVTNVGLPSGSNKL 111 (371)
Q Consensus 38 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--l~~----h~~~V~~~~~~~~~~~l 111 (371)
+..|...|.+-+++|... +...+++.+...++|++...+........+.+. +-+ -+..|++++|+.+|..|
T Consensus 174 vl~~~~~V~~~~WnP~~~---~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L 250 (524)
T KOG0273|consen 174 VLRHESEVFICAWNPLRD---GLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL 250 (524)
T ss_pred eccCCCceEEEecCchhh---hhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence 334999999999999544 133456777788888854321111111111111 111 23579999999999999
Q ss_pred EEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEE
Q 041206 112 YSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISV 189 (371)
Q Consensus 112 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~i 189 (371)
|+|+.||.++||+.. |.++.++.. |.++|.++.|+.. +|++++.|+++.+
T Consensus 251 atG~~~G~~riw~~~-G~l~~tl~~---------------------------HkgPI~slKWnk~G~yilS~~vD~ttil 302 (524)
T KOG0273|consen 251 ATGSEDGEARIWNKD-GNLISTLGQ---------------------------HKGPIFSLKWNKKGTYILSGGVDGTTIL 302 (524)
T ss_pred EEeecCcEEEEEecC-chhhhhhhc---------------------------cCCceEEEEEcCCCCEEEeccCCccEEE
Confidence 999999999999964 666655553 6678999999987 9999999999999
Q ss_pred EeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--C
Q 041206 190 WKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--D 266 (371)
Q Consensus 190 wd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~ 266 (371)
||..++ ...+.+.-|. +...+.|-.+..+++. +.|+.|+++-+....++.++.+|.++|.++.|+ +
T Consensus 303 wd~~~g----~~~q~f~~~s~~~lDVdW~~~~~F~ts-------~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg 371 (524)
T KOG0273|consen 303 WDAHTG----TVKQQFEFHSAPALDVDWQSNDEFATS-------STDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG 371 (524)
T ss_pred EeccCc----eEEEeeeeccCCccceEEecCceEeec-------CCCceEEEEEecCCCcceeeecccCceEEEEECCCC
Confidence 999998 7888888898 7688999998899999 999999999999999999999999999999999 7
Q ss_pred CeEEEEeCCCcEEEEEccCCCCc----ceecceEEEEe---------cCCCCEEEEecCCCeEEEEEcCCcceeeee-cC
Q 041206 267 EYLFSSSLDETIKIWLYTHTKNN----AELSSLFGMLD---------AEAKPVLFSSGKDSAIRLYELPSFKLRARI-FS 332 (371)
Q Consensus 267 ~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~---------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~ 332 (371)
.+|+++|.|++++||........ .+-..+..+.+ +..+..+++++.|++|++||+..+.++..+ .|
T Consensus 372 ~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH 451 (524)
T KOG0273|consen 372 SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH 451 (524)
T ss_pred ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC
Confidence 89999999999999996654421 11111222222 233457999999999999999999999999 48
Q ss_pred CceEEEEEeCCCC-eEEeeCCCCcEEEEEccccceec
Q 041206 333 RREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 333 ~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
..+|++++|+|+| ++|+|+.||.|++|+.+++++.+
T Consensus 452 ~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~ 488 (524)
T KOG0273|consen 452 QEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK 488 (524)
T ss_pred CCceEEEEecCCCcEEEecCCCCeeEeccccchheeE
Confidence 9999999999999 99999999999999999887654
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.5e-34 Score=222.95 Aligned_cols=274 Identities=20% Similarity=0.275 Sum_probs=225.9
Q ss_pred CCceeeccCcc-------cccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeE
Q 041206 18 GGETMMSDDDD-------LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLM 90 (371)
Q Consensus 18 ~g~~l~~~~~d-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 90 (371)
+.-+|+++++| ..+|++...++.....|..+...|.+..++ ...-..|++++.+ .....++.
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LA-----aa~~qhvRlyD~~------S~np~Pv~ 77 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLA-----AAGNQHVRLYDLN------SNNPNPVA 77 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhh-----hccCCeeEEEEcc------CCCCCcee
Confidence 44689999999 557999999998888999999999888776 3444678888843 33455899
Q ss_pred eeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeE
Q 041206 91 KLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNA 170 (371)
Q Consensus 91 ~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~ 170 (371)
++.+|++.|+++.|..+|+.++|||+||+++|||++...+.+.+.... +|++
T Consensus 78 t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~s----------------------------pVn~ 129 (311)
T KOG0315|consen 78 TFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNS----------------------------PVNT 129 (311)
T ss_pred EEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCC----------------------------Ccce
Confidence 999999999999999999999999999999999999988888777544 4899
Q ss_pred EEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEec-Cc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCC
Q 041206 171 LVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRA-PL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDN 245 (371)
Q Consensus 171 ~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~ 245 (371)
+..+|+ .|++|..+|.|++||+... .+...+-. .. .|.++.+.|||. ++++ ...|..++|++-+
T Consensus 130 vvlhpnQteLis~dqsg~irvWDl~~~----~c~~~liPe~~~~i~sl~v~~dgsml~a~-------nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 130 VVLHPNQTELISGDQSGNIRVWDLGEN----SCTHELIPEDDTSIQSLTVMPDGSMLAAA-------NNKGNCYVWRLLN 198 (311)
T ss_pred EEecCCcceEEeecCCCcEEEEEccCC----ccccccCCCCCcceeeEEEcCCCcEEEEe-------cCCccEEEEEccC
Confidence 999998 9999999999999999987 33333333 33 999999999997 7777 8899999999865
Q ss_pred c------eEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCC-CC----cceecceEEEEecCCCCEEEEecC
Q 041206 246 L------ECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHT-KN----NAELSSLFGMLDAEAKPVLFSSGK 312 (371)
Q Consensus 246 ~------~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~-~~----~~~~~~~~~~~~~~~~~~l~~~~~ 312 (371)
. +++..++.|++-+..+.++ .++|+++|.|.+++||+.... +. .+....+..+.++.++.+|++|+.
T Consensus 199 ~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTass 278 (311)
T KOG0315|consen 199 HQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASS 278 (311)
T ss_pred CCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCC
Confidence 3 4667889999999999999 579999999999999997665 11 223245666677777779999999
Q ss_pred CCeEEEEEcCCcceeeeec-CCceEEEEEe
Q 041206 313 DSAIRLYELPSFKLRARIF-SRREVEVDQI 341 (371)
Q Consensus 313 d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~ 341 (371)
|+.+++|++..++.+.... |.....|++.
T Consensus 279 d~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 279 DHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred CCceeecccccCceeeecCCcccccEEEEe
Confidence 9999999999999888877 4555566554
No 18
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.7e-33 Score=237.01 Aligned_cols=330 Identities=13% Similarity=0.155 Sum_probs=256.7
Q ss_pred eeeccCcc-------cccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeee
Q 041206 21 TMMSDDDD-------LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLN 93 (371)
Q Consensus 21 ~l~~~~~d-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~ 93 (371)
.++++++| .+.-+....++.|+.-|.++.++|...+.. +.+.|+.+.+++ ..+++.+..|.
T Consensus 162 Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fa----t~gsDgki~iyD--------Gktge~vg~l~ 229 (603)
T KOG0318|consen 162 RIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFA----TAGSDGKIYIYD--------GKTGEKVGELE 229 (603)
T ss_pred EEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEE----EecCCccEEEEc--------CCCccEEEEec
Confidence 35666666 445778888999999999999999877543 357888999998 77889999998
Q ss_pred ---CccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC-----eeEEEeecCCEEEEecCCcEEEEEe--
Q 041206 94 ---GHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGA-----EIGCLISEGSWVFLGLPNAVKSWRV-- 163 (371)
Q Consensus 94 ---~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~-- 163 (371)
+|++.|.+++|+||++.++|+|.|.+++|||+.+.++++++.... .+.|+...+.++.++.++.+.+++.
T Consensus 230 ~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d 309 (603)
T KOG0318|consen 230 DSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSD 309 (603)
T ss_pred CCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccC
Confidence 999999999999999999999999999999999999999998754 4667777777777788888887776
Q ss_pred ---------CCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcc-------ee--------------------eEEE
Q 041206 164 ---------NAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPF-------KQ--------------------VASI 205 (371)
Q Consensus 164 ---------~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~-------~~--------------------~~~~ 205 (371)
|...|+++..+++ +|++|+.||.|.-|+..++.... .. +..+
T Consensus 310 ~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~ 389 (603)
T KOG0318|consen 310 PSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVI 389 (603)
T ss_pred CChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEE
Confidence 4458999999998 99999999999999987754210 00 0000
Q ss_pred -------------ecCcceEEEEecCCc-e-eEec------------------------------ccceeeeeCCCeEEE
Q 041206 206 -------------RAPLWFCSLSSSNDT-R-WNSK------------------------------EEAAVFEFCGHTTRT 240 (371)
Q Consensus 206 -------------~~~~~v~~~~~~~~~-~-l~~~------------------------------~~~~~~~~~dg~i~i 240 (371)
+......+++..+++ . ++++ .+.+++|+.|+.|++
T Consensus 390 ~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhv 469 (603)
T KOG0318|consen 390 SLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHV 469 (603)
T ss_pred ecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEE
Confidence 000011233444433 1 1111 244456699999999
Q ss_pred EECCCceE--EEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCc-----ceecceEEEEecCCCCEEEEec
Q 041206 241 WNLDNLEC--VQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNN-----AELSSLFGMLDAEAKPVLFSSG 311 (371)
Q Consensus 241 wd~~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~ 311 (371)
|.+...+. ...+..|.++|++++|+ +.||+++...+.+.+||+...+.. -+...+.++.+.|+..++++|+
T Consensus 470 ysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGS 549 (603)
T KOG0318|consen 470 YSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGS 549 (603)
T ss_pred EEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEecc
Confidence 99987553 33456799999999999 679999999999999998776642 1334667777888888999999
Q ss_pred CCCeEEEEEcCCcceeeeec--CCceEEEEEeCCCCeEEeeCCCCcEEEEEcc
Q 041206 312 KDSAIRLYELPSFKLRARIF--SRREVEVDQIGPAGLFFPGDASGSVGVWKWL 362 (371)
Q Consensus 312 ~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~ 362 (371)
-|-.|.||+++.......++ |...|+.+.|-.+..+++.+.|..|++|++.
T Consensus 550 lDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 550 LDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence 99999999998866544444 5566999999887799999999999999874
No 19
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-34 Score=224.15 Aligned_cols=243 Identities=21% Similarity=0.248 Sum_probs=205.3
Q ss_pred CceeeEeeeCccCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCC-----ceEEEEeCCCeeEEEeecCCEEEEecCCcE
Q 041206 85 SLATLMKLNGHKKAVTNVGLPSG-SNKLYSGSRDGRVSVWDRDSG-----RCVNVITNGAEIGCLISEGSWVFLGLPNAV 158 (371)
Q Consensus 85 ~~~~~~~l~~h~~~V~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (371)
...+..+|++|++.|+.++..+. .+.+++++.|.++.+|++... ..++.+.
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~----------------------- 60 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT----------------------- 60 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeee-----------------------
Confidence 45667799999999999999885 678999999999999997644 3344444
Q ss_pred EEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeC
Q 041206 159 KSWRVNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFC 234 (371)
Q Consensus 159 ~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~ 234 (371)
-|+..|..+..+++ +.++++.|+.+++||+.++ +..+.|.+|. .|.++++++|++ +++| +.
T Consensus 61 ----GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g----~~t~~f~GH~~dVlsva~s~dn~qivSG-------Sr 125 (315)
T KOG0279|consen 61 ----GHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG----ESTRRFVGHTKDVLSVAFSTDNRQIVSG-------SR 125 (315)
T ss_pred ----ccceEecceEEccCCceEEeccccceEEEEEecCC----cEEEEEEecCCceEEEEecCCCceeecC-------CC
Confidence 35556888888887 9999999999999999999 8899999999 999999999985 9999 99
Q ss_pred CCeEEEEECCCceEEEEeecC--CCcEEEEEEcCC----eEEEEeCCCcEEEEEccCCCC----cceecceEEEEecCCC
Q 041206 235 GHTTRTWNLDNLECVQTLKGH--SDTVTSLLFWDE----YLFSSSLDETIKIWLYTHTKN----NAELSSLFGMLDAEAK 304 (371)
Q Consensus 235 dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~----~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~ 304 (371)
|.+|++|+... .+..++..+ .+.|.++.|+|+ +|++++.|+++++||++..+. .++...++.+..++++
T Consensus 126 DkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDG 204 (315)
T KOG0279|consen 126 DKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDG 204 (315)
T ss_pred cceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCC
Confidence 99999999985 444555433 789999999954 899999999999999988764 3444566667777777
Q ss_pred CEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccccee
Q 041206 305 PVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 305 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~ 367 (371)
.++++|+.||.+.+||++.++.++.+.+...|.+++|+|+. .|+.+ .+..|+|||+.++...
T Consensus 205 slcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v 267 (315)
T KOG0279|consen 205 SLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVV 267 (315)
T ss_pred CEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhh
Confidence 79999999999999999999999999999999999999999 55444 4556999999887543
No 20
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.5e-34 Score=220.35 Aligned_cols=263 Identities=14% Similarity=0.228 Sum_probs=212.8
Q ss_pred eeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCee
Q 041206 61 CVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEI 140 (371)
Q Consensus 61 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 140 (371)
.++.+.|..|+.|. ..++.+.++++-..+.|+.+...|+++.||+++. ..||+||+.+++..
T Consensus 13 LvsA~YDhTIRfWq--------a~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~--------- 74 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQ--------ALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN--------- 74 (311)
T ss_pred EEeccCcceeeeee--------hhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC---------
Confidence 44578899999999 6788999999988889999999999999999986 45999999987642
Q ss_pred EEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecC
Q 041206 141 GCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSN 218 (371)
Q Consensus 141 ~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 218 (371)
.+.-|+.+++.|.++.|..+ ++++|+.||+++|||++.. .+.+.++...+|+++..+|
T Consensus 75 ----------------Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~----~~qR~~~~~spVn~vvlhp 134 (311)
T KOG0315|consen 75 ----------------PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL----SCQRNYQHNSPVNTVVLHP 134 (311)
T ss_pred ----------------ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc----ccchhccCCCCcceEEecC
Confidence 33445567788999999877 9999999999999999996 5555555555999999999
Q ss_pred Cc-eeEecccceeeeeCCCeEEEEECCCceEEEEee-cCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCc-----
Q 041206 219 DT-RWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLK-GHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNN----- 289 (371)
Q Consensus 219 ~~-~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~----- 289 (371)
.. .|++| ..+|.|++||+....+...+- ....+|.++... +.+++.+...|..++|++-.....
T Consensus 135 nQteLis~-------dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P 207 (311)
T KOG0315|consen 135 NQTELISG-------DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEP 207 (311)
T ss_pred CcceEEee-------cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceE
Confidence 76 49999 999999999999887765554 334578888776 789999999999999997654321
Q ss_pred -----ceecceEEEEecCCCCEEEEecCCCeEEEEEcCCc-ceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEc
Q 041206 290 -----AELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSF-KLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKW 361 (371)
Q Consensus 290 -----~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~ 361 (371)
.+..-+..+..+++.++|++++.|.+++||+.+++ +.-..+. |...++..+||.|| +|+||+.|+.+++|++
T Consensus 208 ~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 208 VHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDL 287 (311)
T ss_pred hhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccc
Confidence 11122334455556669999999999999999998 3222333 56799999999999 9999999999999999
Q ss_pred cccceec
Q 041206 362 LLAEQQK 368 (371)
Q Consensus 362 ~~~~~~~ 368 (371)
..++..+
T Consensus 288 ~~~k~v~ 294 (311)
T KOG0315|consen 288 SAGKEVR 294 (311)
T ss_pred ccCceee
Confidence 9877443
No 21
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.3e-35 Score=239.37 Aligned_cols=272 Identities=20% Similarity=0.264 Sum_probs=223.8
Q ss_pred eeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCc
Q 041206 40 MFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGR 119 (371)
Q Consensus 40 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~ 119 (371)
...++|.|+.+.. ...++|..|..|++|+ .++..++..|.||++.|.|+.|. .+.+++||.|.+
T Consensus 195 e~skgVYClQYDD------~kiVSGlrDnTikiWD--------~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsT 258 (499)
T KOG0281|consen 195 ENSKGVYCLQYDD------EKIVSGLRDNTIKIWD--------KNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDST 258 (499)
T ss_pred ccCCceEEEEecc------hhhhcccccCceEEec--------cccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCce
Confidence 3456777766544 3455689999999999 67788999999999999999996 569999999999
Q ss_pred EEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCCEEEEEeCCCeEEEEeccCCCCcc
Q 041206 120 VSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNNDLLFAGSEGGVISVWKGTFVANPF 199 (371)
Q Consensus 120 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 199 (371)
|++||+++++++.++-++ ...|..+.|+..++++++.|.++.+||+..+. ..
T Consensus 259 vrvWDv~tge~l~tlihH---------------------------ceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps-~i 310 (499)
T KOG0281|consen 259 VRVWDVNTGEPLNTLIHH---------------------------CEAVLHLRFSNGYMVTCSKDRSIAVWDMASPT-DI 310 (499)
T ss_pred EEEEeccCCchhhHHhhh---------------------------cceeEEEEEeCCEEEEecCCceeEEEeccCch-HH
Confidence 999999999999988763 44699999999999999999999999998764 23
Q ss_pred eeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEcCCeEEEEeCCCcE
Q 041206 200 KQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDEYLFSSSLDETI 278 (371)
Q Consensus 200 ~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i 278 (371)
.+...+.+|. .|+.+.|+.. .++++ +.|.+|++|++.+++.++++.+|...|.|+.+.++++++|+.|.+|
T Consensus 311 t~rrVLvGHrAaVNvVdfd~k-yIVsA-------SgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntI 382 (499)
T KOG0281|consen 311 TLRRVLVGHRAAVNVVDFDDK-YIVSA-------SGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTI 382 (499)
T ss_pred HHHHHHhhhhhheeeeccccc-eEEEe-------cCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceE
Confidence 4556788999 9999999764 68888 9999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCC----cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceee---------ee-cCCceEEEEEeCCC
Q 041206 279 KIWLYTHTKN----NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRA---------RI-FSRREVEVDQIGPA 344 (371)
Q Consensus 279 ~iwd~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---------~~-~~~~~v~~~~~s~~ 344 (371)
++||+..+.. .++-.-+.++.+.+ ..+++|+.||+|++||+..+.... .+ .|.+.|..+.|..-
T Consensus 383 Rlwdi~~G~cLRvLeGHEeLvRciRFd~--krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f 460 (499)
T KOG0281|consen 383 RLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF 460 (499)
T ss_pred EEEeccccHHHHHHhchHHhhhheeecC--ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecce
Confidence 9999887663 12222223333333 369999999999999998764321 11 25779999999422
Q ss_pred CeEEeeCCCCcEEEEEccccce
Q 041206 345 GLFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 345 ~~l~~~~~dg~i~iw~~~~~~~ 366 (371)
.+++++.|.+|-|||...+..
T Consensus 461 -qIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 461 -QIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred -EEEeccCCCeEEEEEcCCCCc
Confidence 899999999999999976644
No 22
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.3e-35 Score=248.61 Aligned_cols=281 Identities=14% Similarity=0.200 Sum_probs=233.7
Q ss_pred cceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCE
Q 041206 31 KGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNK 110 (371)
Q Consensus 31 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 110 (371)
..+++..+.+|+.+|+++.+.|-..- ...+++.|..|++|+ .....++++++.||..+|.+++|+++|..
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~h---LlLS~gmD~~vklW~-------vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~ 272 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGH---LLLSGGMDGLVKLWN-------VYDDRRCLRTFKGHRKPVRDASFNNCGTS 272 (503)
T ss_pred cHhheeeccCCccccchhhhccceee---EEEecCCCceEEEEE-------EecCcceehhhhcchhhhhhhhccccCCe
Confidence 36678899999999999998873221 112478899999999 56678999999999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC---EEEEEeCCCeE
Q 041206 111 LYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND---LLFAGSEGGVI 187 (371)
Q Consensus 111 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~---~l~~~~~dg~v 187 (371)
++|+|.|+.|++||+++|+++..+..... ++|+.++|+ .+++|+.|+.|
T Consensus 273 fLS~sfD~~lKlwDtETG~~~~~f~~~~~----------------------------~~cvkf~pd~~n~fl~G~sd~ki 324 (503)
T KOG0282|consen 273 FLSASFDRFLKLWDTETGQVLSRFHLDKV----------------------------PTCVKFHPDNQNIFLVGGSDKKI 324 (503)
T ss_pred eeeeecceeeeeeccccceEEEEEecCCC----------------------------ceeeecCCCCCcEEEEecCCCcE
Confidence 99999999999999999999999987654 778888876 89999999999
Q ss_pred EEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEee-cCCCcEEEEEE
Q 041206 188 SVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLK-GHSDTVTSLLF 264 (371)
Q Consensus 188 ~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~ 264 (371)
+.||++++ +.++.+..|- .|..+.|-++|+ +++. +.|++++||+.+...+++... .+.....++..
T Consensus 325 ~~wDiRs~----kvvqeYd~hLg~i~~i~F~~~g~rFiss-------SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~ 393 (503)
T KOG0282|consen 325 RQWDIRSG----KVVQEYDRHLGAILDITFVDEGRRFISS-------SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTL 393 (503)
T ss_pred EEEeccch----HHHHHHHhhhhheeeeEEccCCceEeee-------ccCccEEEEEcCCCccchhhcchhhccCcceec
Confidence 99999999 8889999888 999999999996 9999 999999999999877665433 22223445555
Q ss_pred c--CCeEEEEeCCCcEEEEEccCCCC-------ccee--cceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-C
Q 041206 265 W--DEYLFSSSLDETIKIWLYTHTKN-------NAEL--SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-S 332 (371)
Q Consensus 265 ~--~~~l~s~~~dg~i~iwd~~~~~~-------~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~ 332 (371)
+ +++++.-+.|..|.+|.+...-. .++. ..-+.+-+++++.+|++|..||.+.+||.++-+++..+. |
T Consensus 394 ~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah 473 (503)
T KOG0282|consen 394 HPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH 473 (503)
T ss_pred CCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC
Confidence 5 78999999999999999443221 1111 222334455556699999999999999999999998888 5
Q ss_pred CceEEEEEeCCCC--eEEeeCCCCcEEEEE
Q 041206 333 RREVEVDQIGPAG--LFFPGDASGSVGVWK 360 (371)
Q Consensus 333 ~~~v~~~~~s~~~--~l~~~~~dg~i~iw~ 360 (371)
.+++..+.|+|.. .+||++.||.|++|+
T Consensus 474 ~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 474 DQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CcceEEEEecCCCcceeEecccCceeEecC
Confidence 7999999999987 999999999999996
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=244.22 Aligned_cols=268 Identities=18% Similarity=0.283 Sum_probs=221.8
Q ss_pred ccceeeeeeeec-ceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcE
Q 041206 42 GFGLAAMAIRVC-NNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRV 120 (371)
Q Consensus 42 ~~~v~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v 120 (371)
...|..+.+.|. +.++. +...+-..+|+ ......-..+++|..+|+++.|++++.+++||+.+|.|
T Consensus 96 kc~V~~v~WtPeGRRLlt-----gs~SGEFtLWN--------g~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~i 162 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLT-----GSQSGEFTLWN--------GTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMI 162 (464)
T ss_pred ccceeeEEEcCCCceeEe-----ecccccEEEec--------CceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceE
Confidence 345667778886 33444 55666778888 44555566789999999999999999999999999999
Q ss_pred EEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCc
Q 041206 121 SVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANP 198 (371)
Q Consensus 121 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~ 198 (371)
++|+..-... +.+.. .|...|.+++|+|+ .+++++.||+|+|||....
T Consensus 163 KyWqpnmnnV-k~~~a--------------------------hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~--- 212 (464)
T KOG0284|consen 163 KYWQPNMNNV-KIIQA--------------------------HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP--- 212 (464)
T ss_pred Eecccchhhh-HHhhH--------------------------hhhhhhheeccCCCCceeEEecCCCeEEEEeccCC---
Confidence 9999653332 22221 12347999999998 9999999999999999988
Q ss_pred ceeeEEEecCc-ceEEEEecCCc-eeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeC
Q 041206 199 FKQVASIRAPL-WFCSLSSSNDT-RWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSL 274 (371)
Q Consensus 199 ~~~~~~~~~~~-~v~~~~~~~~~-~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~ 274 (371)
+....+.+|. .|.++.|+|.. .++++ +.|..|++||.++++++.++.+|+..|..+.|+ +++|+++|.
T Consensus 213 -kee~vL~GHgwdVksvdWHP~kgLiasg-------skDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk 284 (464)
T KOG0284|consen 213 -KEERVLRGHGWDVKSVDWHPTKGLIASG-------SKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK 284 (464)
T ss_pred -chhheeccCCCCcceeccCCccceeEEc-------cCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC
Confidence 6777889999 99999999964 58999 999999999999999999999999999999999 789999999
Q ss_pred CCcEEEEEccCCCC-------cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec--CCceEEEEEeCCCC
Q 041206 275 DETIKIWLYTHTKN-------NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF--SRREVEVDQIGPAG 345 (371)
Q Consensus 275 dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~ 345 (371)
|..++++|++..++ ...+..+. +.|-...+|.+|+.||.|..|.+...+++..+. |...|++++|+|-|
T Consensus 285 D~~~kv~DiR~mkEl~~~r~Hkkdv~~~~--WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlG 362 (464)
T KOG0284|consen 285 DQSCKVFDIRTMKELFTYRGHKKDVTSLT--WHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLG 362 (464)
T ss_pred CceEEEEehhHhHHHHHhhcchhhheeec--cccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccc
Confidence 99999999985442 22222333 555566689999999999999998777776665 68999999999999
Q ss_pred -eEEeeCCCCcEEEEEcc
Q 041206 346 -LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 346 -~l~~~~~dg~i~iw~~~ 362 (371)
+|++|+.|.++++|.-.
T Consensus 363 hil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 363 HILATGSNDRTVRFWTRN 380 (464)
T ss_pred eeEeecCCCcceeeeccC
Confidence 99999999999999754
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1e-33 Score=236.58 Aligned_cols=270 Identities=17% Similarity=0.169 Sum_probs=238.3
Q ss_pred ccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEE
Q 041206 42 GFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVS 121 (371)
Q Consensus 42 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~ 121 (371)
...|++++++..+.++ .+|..++.+++|+ ..+.++.+|..|+++|.++.|+.+|+||++++.|+++.
T Consensus 235 nkdVT~L~Wn~~G~~L----atG~~~G~~riw~---------~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~tti 301 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLL----ATGSEDGEARIWN---------KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTI 301 (524)
T ss_pred cCCcceEEecCCCCeE----EEeecCcEEEEEe---------cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEE
Confidence 4678899988766654 3578899999999 67889999999999999999999999999999999999
Q ss_pred EEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC-EEEEEeCCCeEEEEeccCCCCcce
Q 041206 122 VWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND-LLFAGSEGGVISVWKGTFVANPFK 200 (371)
Q Consensus 122 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~ 200 (371)
+||..+|.....+..+ +.+-.++.|-.+ .+++.+.|+.|+|+.+... .
T Consensus 302 lwd~~~g~~~q~f~~~---------------------------s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~----~ 350 (524)
T KOG0273|consen 302 LWDAHTGTVKQQFEFH---------------------------SAPALDVDWQSNDEFATSSTDGCIHVCKVGED----R 350 (524)
T ss_pred EEeccCceEEEeeeec---------------------------cCCccceEEecCceEeecCCCceEEEEEecCC----C
Confidence 9999999888877653 334467888766 9999999999999999988 8
Q ss_pred eeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEcC-----------C
Q 041206 201 QVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWD-----------E 267 (371)
Q Consensus 201 ~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-----------~ 267 (371)
+..++.+|. +|.++.|+|.+. |+++ +.|++++||.+........+++|...|..+.|+| .
T Consensus 351 P~~t~~GH~g~V~alk~n~tg~LLaS~-------SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~ 423 (524)
T KOG0273|consen 351 PVKTFIGHHGEVNALKWNPTGSLLASC-------SDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNL 423 (524)
T ss_pred cceeeecccCceEEEEECCCCceEEEe-------cCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCc
Confidence 999999999 999999999997 8899 9999999999999999999999999999999982 3
Q ss_pred eEEEEeCCCcEEEEEccCCCCc----ceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCC
Q 041206 268 YLFSSSLDETIKIWLYTHTKNN----AELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGP 343 (371)
Q Consensus 268 ~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~ 343 (371)
.+++++.|++|++||+..+.+. .+...+..+.++++++++++|+.||.|.+|+.++++....+...+.|..++|+.
T Consensus 424 ~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~ 503 (524)
T KOG0273|consen 424 MLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNA 503 (524)
T ss_pred eEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcC
Confidence 8999999999999998776642 222355666777777799999999999999999999999999999999999999
Q ss_pred CC-eEEeeCCCCcEEEEEcc
Q 041206 344 AG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 344 ~~-~l~~~~~dg~i~iw~~~ 362 (371)
+| +|..+-.||.+++.|+.
T Consensus 504 ~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 504 AGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCEEEEEecCCCceEEEec
Confidence 99 99999999999999875
No 25
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9e-34 Score=248.83 Aligned_cols=338 Identities=17% Similarity=0.239 Sum_probs=260.2
Q ss_pred cccCCCCceeeccCcc-------cccceeEEEEEe-eccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccC
Q 041206 13 HKHSEGGETMMSDDDD-------LMKGRAEEREEM-FGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTN 84 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d-------~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (371)
...+||++.|.++... ++.+++++..+. |...|..+++.|+. ..+..|+.++.+++|+ -.
T Consensus 68 ~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g----~LlAtggaD~~v~VWd--------i~ 135 (775)
T KOG0319|consen 68 LALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTG----TLLATGGADGRVKVWD--------IK 135 (775)
T ss_pred eeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCC----ceEEeccccceEEEEE--------ee
Confidence 4578999988887655 667899988888 99999999999966 4556799999999999 45
Q ss_pred CceeeEeeeCccCCeEEEEEcCCCC--EEEEEeCCCcEEEEECCCCce-EEEEeC-CCeeEEEee--c-CCEEEEecCCc
Q 041206 85 SLATLMKLNGHKKAVTNVGLPSGSN--KLYSGSRDGRVSVWDRDSGRC-VNVITN-GAEIGCLIS--E-GSWVFLGLPNA 157 (371)
Q Consensus 85 ~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~-~~~~~~-~~~~~~~~~--~-~~~~~~~~~~~ 157 (371)
.....+.|+||.+.|.++.|+|+-+ .|++|..|+++++||+.+... +.+... ...+..+.+ + ...+.++.|+.
T Consensus 136 ~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkv 215 (775)
T KOG0319|consen 136 NGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKV 215 (775)
T ss_pred CCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcE
Confidence 6688999999999999999999654 589999999999999996654 444433 345666554 3 44566688999
Q ss_pred EEEEEeCCC----------CeeEEEEeCC-------EEEEEeCCCeEEEEeccCCCCcc---------------------
Q 041206 158 VKSWRVNAA----------SVNALVVNND-------LLFAGSEGGVISVWKGTFVANPF--------------------- 199 (371)
Q Consensus 158 i~~~~~~~~----------~v~~~~~~~~-------~l~~~~~dg~v~iwd~~~~~~~~--------------------- 199 (371)
+.+||+++. .+-++.+-++ ++++++.+|.+++||.++.....
T Consensus 216 i~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~ 295 (775)
T KOG0319|consen 216 IIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQ 295 (775)
T ss_pred EEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCc
Confidence 999999765 4555555444 89999999999999987643110
Q ss_pred ------------------e------------------------------------------eeEEEecCc-ceEEEEecC
Q 041206 200 ------------------K------------------------------------------QVASIRAPL-WFCSLSSSN 218 (371)
Q Consensus 200 ------------------~------------------------------------------~~~~~~~~~-~v~~~~~~~ 218 (371)
+ ..+.+.+|. .|.++....
T Consensus 296 ~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~ 375 (775)
T KOG0319|consen 296 LLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWS 375 (775)
T ss_pred eEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecc
Confidence 0 011223444 444444333
Q ss_pred Cc-eeEecccceeeeeCCCeEEEEECCCce----EEEEeecCCCcEEEEEEc---CCeEEEEeCCCcEEEEEccCCCCcc
Q 041206 219 DT-RWNSKEEAAVFEFCGHTTRTWNLDNLE----CVQTLKGHSDTVTSLLFW---DEYLFSSSLDETIKIWLYTHTKNNA 290 (371)
Q Consensus 219 ~~-~l~~~~~~~~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~ 290 (371)
+| .+++| +.|.++++|.++.+. ++....+|.+.|.+++++ ..+|+++|.|+++++|++...++..
T Consensus 376 ~g~llat~-------sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~ 448 (775)
T KOG0319|consen 376 SGDLLATG-------SKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA 448 (775)
T ss_pred cCcEEEEe-------cCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc
Confidence 34 34555 999999999885432 456678999999999998 5799999999999999987733211
Q ss_pred -------------eecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCc
Q 041206 291 -------------ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGS 355 (371)
Q Consensus 291 -------------~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~ 355 (371)
+-..+.++...++..++++||.|.+.+||+++..+....+. |...|+++.|+|.. .++|+|.|++
T Consensus 449 ~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T 528 (775)
T KOG0319|consen 449 FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT 528 (775)
T ss_pred ccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce
Confidence 11234445556666699999999999999999988888887 68899999999999 9999999999
Q ss_pred EEEEEccccceecc
Q 041206 356 VGVWKWLLAEQQKM 369 (371)
Q Consensus 356 i~iw~~~~~~~~~~ 369 (371)
|+||.+++..+.++
T Consensus 529 vKIW~is~fSClkT 542 (775)
T KOG0319|consen 529 VKIWSISTFSCLKT 542 (775)
T ss_pred EEEEEeccceeeee
Confidence 99999998877654
No 26
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.5e-33 Score=248.12 Aligned_cols=250 Identities=20% Similarity=0.267 Sum_probs=212.0
Q ss_pred ceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCC-----------------------CCccCCcee
Q 041206 32 GRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDG-----------------------DNTTNSLAT 88 (371)
Q Consensus 32 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------------~~~~~~~~~ 88 (371)
.-+..++..-..+++|..+++....++ -|-.+..|++|+..+.. .........
T Consensus 368 Sic~YT~~nt~~~v~ca~fSddssmlA----~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~ 443 (707)
T KOG0263|consen 368 SICMYTFHNTYQGVTCAEFSDDSSMLA----CGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGT 443 (707)
T ss_pred cEEEEEEEEcCCcceeEeecCCcchhh----ccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCce
Confidence 334566666778899999999766443 35677889999987521 011233445
Q ss_pred eEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCe
Q 041206 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASV 168 (371)
Q Consensus 89 ~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v 168 (371)
..++.||+++|+.+.|+|+.++|+++|.|++||+|.+.+..++-.+.. |..+|
T Consensus 444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~G---------------------------H~~PV 496 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKG---------------------------HLAPV 496 (707)
T ss_pred eEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecC---------------------------CCcce
Confidence 667999999999999999999999999999999999999988777664 55579
Q ss_pred eEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECC
Q 041206 169 NALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLD 244 (371)
Q Consensus 169 ~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~ 244 (371)
.++.|+|. ++++++.|++-++|..... .+++.+.+|. .|.|+.|+|+.. +++| +.|.++++||+.
T Consensus 497 wdV~F~P~GyYFatas~D~tArLWs~d~~----~PlRifaghlsDV~cv~FHPNs~Y~aTG-------SsD~tVRlWDv~ 565 (707)
T KOG0263|consen 497 WDVQFAPRGYYFATASHDQTARLWSTDHN----KPLRIFAGHLSDVDCVSFHPNSNYVATG-------SSDRTVRLWDVS 565 (707)
T ss_pred eeEEecCCceEEEecCCCceeeeeecccC----CchhhhcccccccceEEECCcccccccC-------CCCceEEEEEcC
Confidence 99999998 9999999999999999887 8999999999 999999999885 8999 999999999999
Q ss_pred CceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC----cceecceEEEEecCCCCEEEEecCCCeEEE
Q 041206 245 NLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN----NAELSSLFGMLDAEAKPVLFSSGKDSAIRL 318 (371)
Q Consensus 245 ~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i 318 (371)
+|..++.|.||.++|.+++|+ |.+|++|+.||.|.+||+..... .++...+..+.++.++..|++|+.|++|++
T Consensus 566 ~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~l 645 (707)
T KOG0263|consen 566 TGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRL 645 (707)
T ss_pred CCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEE
Confidence 999999999999999999999 88999999999999999988653 233445566666777779999999999999
Q ss_pred EEcCC
Q 041206 319 YELPS 323 (371)
Q Consensus 319 wd~~~ 323 (371)
||+..
T Consensus 646 WD~~~ 650 (707)
T KOG0263|consen 646 WDLTK 650 (707)
T ss_pred EEchh
Confidence 99865
No 27
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-33 Score=243.88 Aligned_cols=277 Identities=16% Similarity=0.264 Sum_probs=243.5
Q ss_pred eeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEE
Q 041206 33 RAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLY 112 (371)
Q Consensus 33 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~ 112 (371)
+..+.+..+++.|.++.++|...|+..... .+.+.+|+ -++..+++.+.-..-+|++..|-+..+.++
T Consensus 4 ~~krk~~~rSdRVKsVd~HPtePw~la~Ly----nG~V~IWn--------yetqtmVksfeV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 4 DFKRKFQSRSDRVKSVDFHPTEPWILAALY----NGDVQIWN--------YETQTMVKSFEVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred hhhhHhhccCCceeeeecCCCCceEEEeee----cCeeEEEe--------cccceeeeeeeecccchhhheeeeccceEE
Confidence 344556679999999999999998764444 34688999 466788999998899999999999999999
Q ss_pred EEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEE
Q 041206 113 SGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVW 190 (371)
Q Consensus 113 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iw 190 (371)
+|+.|..|++|+..+++.+..|.. |..-|.+++.+|. ++++++.|-.|++|
T Consensus 72 ~GsDD~~IrVfnynt~ekV~~FeA---------------------------H~DyIR~iavHPt~P~vLtsSDDm~iKlW 124 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVKTFEA---------------------------HSDYIRSIAVHPTLPYVLTSSDDMTIKLW 124 (794)
T ss_pred EecCCceEEEEecccceeeEEeec---------------------------cccceeeeeecCCCCeEEecCCccEEEEe
Confidence 999999999999999999988876 4456999999999 99999999999999
Q ss_pred eccCCCCcceeeEEEecCc-ceEEEEecCCc--eeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc-C
Q 041206 191 KGTFVANPFKQVASIRAPL-WFCSLSSSNDT--RWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW-D 266 (371)
Q Consensus 191 d~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~--~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~ 266 (371)
|.+.. +.+.+++.+|. .|.+++|+|.. .++++ +-|++|++|.+.+..+..++++|...|+++.|- +
T Consensus 125 ~we~~---wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~-------sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~ 194 (794)
T KOG0276|consen 125 DWENE---WACEQTFEGHEHYVMQVAFNPKDPNTFASA-------SLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTG 194 (794)
T ss_pred eccCc---eeeeeEEcCcceEEEEEEecCCCccceeee-------eccccEEEEEcCCCCCceeeeccccCcceEEeccC
Confidence 99876 58899999999 99999999965 49999 999999999999999999999999999999998 2
Q ss_pred ---CeEEEEeCCCcEEEEEccCCCC----cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEE
Q 041206 267 ---EYLFSSSLDETIKIWLYTHTKN----NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEV 338 (371)
Q Consensus 267 ---~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~ 338 (371)
.+|++|+.|.++++||+++... .++...+..+++.+.-+++++|++||++|||+..+.++...+. +-+.+++
T Consensus 195 gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~ 274 (794)
T KOG0276|consen 195 GDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWC 274 (794)
T ss_pred CCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEE
Confidence 4999999999999999988764 4566677788888888899999999999999999988777665 5789999
Q ss_pred EEeCCCC-eEEeeCCCCcEEE
Q 041206 339 DQIGPAG-LFFPGDASGSVGV 358 (371)
Q Consensus 339 ~~~s~~~-~l~~~~~dg~i~i 358 (371)
++-.+.+ .++.|..+|.|.+
T Consensus 275 I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 275 IAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EeecCCCCeEEEeccCCcEEE
Confidence 9998888 9899988887755
No 28
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.9e-32 Score=222.19 Aligned_cols=306 Identities=14% Similarity=0.127 Sum_probs=249.7
Q ss_pred eeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEE
Q 041206 33 RAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLY 112 (371)
Q Consensus 33 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~ 112 (371)
.-+..|..|++.|.+++.+|...| +.+|+.|-.-.+|+ ..+++....+.||++.|+++.|+.+|.+||
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l----~aTGGgDD~AflW~--------~~~ge~~~eltgHKDSVt~~~FshdgtlLA 122 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNL----VATGGGDDLAFLWD--------ISTGEFAGELTGHKDSVTCCSFSHDGTLLA 122 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCce----EEecCCCceEEEEE--------ccCCcceeEecCCCCceEEEEEccCceEEE
Confidence 346789999999999999995554 44688888899999 345668999999999999999999999999
Q ss_pred EEeCCCcEEEEECCCCceEEEEe-CCCeeEEEee--cCCEEEEe-cCCcEEEEEeCCC-----------CeeEEEEeCC-
Q 041206 113 SGSRDGRVSVWDRDSGRCVNVIT-NGAEIGCLIS--EGSWVFLG-LPNAVKSWRVNAA-----------SVNALVVNND- 176 (371)
Q Consensus 113 s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~-~~~~i~~~~~~~~-----------~v~~~~~~~~- 176 (371)
||+-+|.|+||+..++.....+. .-..+..+.+ ...++++| .|+.+-.|.+.++ ++++=.|.|+
T Consensus 123 TGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdG 202 (399)
T KOG0296|consen 123 TGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDG 202 (399)
T ss_pred ecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCC
Confidence 99999999999999999888876 3455666654 35555554 6888888888763 6777778887
Q ss_pred -EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc--ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEe
Q 041206 177 -LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL--WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTL 252 (371)
Q Consensus 177 -~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~ 252 (371)
.++++..||+|++|++.++ +++..+.... ...++.++..+. ++.| +.++.+++-...+++.+...
T Consensus 203 Kr~~tgy~dgti~~Wn~ktg----~p~~~~~~~e~~~~~~~~~~~~~~~~~~g-------~~e~~~~~~~~~sgKVv~~~ 271 (399)
T KOG0296|consen 203 KRILTGYDDGTIIVWNPKTG----QPLHKITQAEGLELPCISLNLAGSTLTKG-------NSEGVACGVNNGSGKVVNCN 271 (399)
T ss_pred ceEEEEecCceEEEEecCCC----ceeEEecccccCcCCccccccccceeEec-------cCCccEEEEccccceEEEec
Confidence 9999999999999999999 6777766444 778888888875 7888 99999999999998888766
Q ss_pred e--------cCCCcEEEEEEcC-----CeEEEEeCCCcEEEEEccCCCCcc---eecceEEEEecCCCCEEEEecCCCeE
Q 041206 253 K--------GHSDTVTSLLFWD-----EYLFSSSLDETIKIWLYTHTKNNA---ELSSLFGMLDAEAKPVLFSSGKDSAI 316 (371)
Q Consensus 253 ~--------~~~~~v~~~~~~~-----~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i 316 (371)
+ .+...+.++.+.+ .+.++|+.||+|.|||+....... +...+..+.+.+ ..+|++++.+|.|
T Consensus 272 n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v 350 (399)
T KOG0296|consen 272 NGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKV 350 (399)
T ss_pred CCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceE
Confidence 6 3455556666552 478999999999999977655321 123455555555 4489999999999
Q ss_pred EEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcc
Q 041206 317 RLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 317 ~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~ 362 (371)
+.||.++++++..+. |..+|.+++++|+. +++|+|.|++.+||++.
T Consensus 351 ~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 351 RQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999999999999988 68899999999999 99999999999999874
No 29
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.6e-33 Score=249.41 Aligned_cols=278 Identities=23% Similarity=0.411 Sum_probs=234.1
Q ss_pred EEEEEee-ccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCce--eeEeeeCccCCeEEEEEcCCCCEE
Q 041206 35 EEREEMF-GFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLA--TLMKLNGHKKAVTNVGLPSGSNKL 111 (371)
Q Consensus 35 ~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~l~~h~~~V~~~~~~~~~~~l 111 (371)
...+.+| ...|.++.+++...++. .+..++.++.|.. ...+ +.+.+.+|...|++++|+|+++++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~----~~~~~~~i~~~~~--------~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l 218 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALA----AASSDGLIRIWKL--------EGIKSNLLRELSGHTRGVSDVAFSPDGSYL 218 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEE----EccCCCcEEEeec--------ccccchhhccccccccceeeeEECCCCcEE
Confidence 4445454 78899999999777533 3567889999993 3333 778889999999999999999999
Q ss_pred EEEeCCCcEEEEEC-CCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEE
Q 041206 112 YSGSRDGRVSVWDR-DSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVIS 188 (371)
Q Consensus 112 ~s~~~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~ 188 (371)
++++.|++|+|||+ ..+.+++++.. |+..|++++|+|. ++++|+.|++|+
T Consensus 219 ~s~s~D~tiriwd~~~~~~~~~~l~g---------------------------H~~~v~~~~f~p~g~~i~Sgs~D~tvr 271 (456)
T KOG0266|consen 219 LSGSDDKTLRIWDLKDDGRNLKTLKG---------------------------HSTYVTSVAFSPDGNLLVSGSDDGTVR 271 (456)
T ss_pred EEecCCceEEEeeccCCCeEEEEecC---------------------------CCCceEEEEecCCCCEEEEecCCCcEE
Confidence 99999999999999 55588888875 5557999999998 999999999999
Q ss_pred EEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCce--EEEEeecCCCc--EEEE
Q 041206 189 VWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLE--CVQTLKGHSDT--VTSL 262 (371)
Q Consensus 189 iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~--v~~~ 262 (371)
+||++++ ++...+.+|. .|++++|++++. ++++ +.|+.|++||+.++. ++..+..+... ++++
T Consensus 272 iWd~~~~----~~~~~l~~hs~~is~~~f~~d~~~l~s~-------s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 340 (456)
T KOG0266|consen 272 IWDVRTG----ECVRKLKGHSDGISGLAFSPDGNLLVSA-------SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSV 340 (456)
T ss_pred EEeccCC----eEEEeeeccCCceEEEEECCCCCEEEEc-------CCCccEEEEECCCCceeeeecccCCCCCCceeEE
Confidence 9999998 8999999999 999999999996 8888 999999999999999 56777777666 9999
Q ss_pred EEc--CCeEEEEeCCCcEEEEEccCCCCcce-------ecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-C
Q 041206 263 LFW--DEYLFSSSLDETIKIWLYTHTKNNAE-------LSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-S 332 (371)
Q Consensus 263 ~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~ 332 (371)
.|+ +.++++++.|+.+++||++....... ..++.......++.++++|+.|+.|++||+.++..+..+. |
T Consensus 341 ~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 341 QFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred EECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence 998 78999999999999999886653111 1234334445567799999999999999999988887777 4
Q ss_pred -CceEEEEEeCCCC-eEEeeC--CCCcEEEEEcc
Q 041206 333 -RREVEVDQIGPAG-LFFPGD--ASGSVGVWKWL 362 (371)
Q Consensus 333 -~~~v~~~~~s~~~-~l~~~~--~dg~i~iw~~~ 362 (371)
...+..++++|.. ++++++ .|+.+++|...
T Consensus 421 ~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 421 SKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 5788999999998 888888 79999999864
No 30
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.7e-32 Score=237.95 Aligned_cols=331 Identities=18% Similarity=0.282 Sum_probs=271.0
Q ss_pred CCCCceeeccCcc-------cccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCcee
Q 041206 16 SEGGETMMSDDDD-------LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLAT 88 (371)
Q Consensus 16 sp~g~~l~~~~~d-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 88 (371)
+|+.-.||+|=.| ..++...-.+.+|..+|+.+.+...+. ...+|+.|..|-+|+. -...-
T Consensus 74 ~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~----rlaSGskDt~IIvwDl--------V~E~G 141 (888)
T KOG0306|consen 74 SDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGT----RLASGSKDTDIIVWDL--------VGEEG 141 (888)
T ss_pred cCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCc----eEeecCCCccEEEEEe--------cccee
Confidence 5888888988777 334577888999999999999887444 3445899999999993 23345
Q ss_pred eEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC-CCeeEEEeecCCEEE-EecCCcEEEEEeCCC
Q 041206 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN-GAEIGCLISEGSWVF-LGLPNAVKSWRVNAA 166 (371)
Q Consensus 89 ~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~ 166 (371)
...|+||++.|+.+-|..+.++|++.+.|+.|++||+++..|..+.-. ...+..+...++.++ .+.+..+++|++...
T Consensus 142 l~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~ 221 (888)
T KOG0306|consen 142 LFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFE 221 (888)
T ss_pred eEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecc
Confidence 778999999999999999889999999999999999999999888655 456777777665544 467888999988211
Q ss_pred --------------------------------------------------------------------------------
Q 041206 167 -------------------------------------------------------------------------------- 166 (371)
Q Consensus 167 -------------------------------------------------------------------------------- 166 (371)
T Consensus 222 ~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~ 301 (888)
T KOG0306|consen 222 DDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENED 301 (888)
T ss_pred cccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 041206 167 -------------------------------------------------------------------------------- 166 (371)
Q Consensus 167 -------------------------------------------------------------------------------- 166 (371)
T Consensus 302 ~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~v 381 (888)
T KOG0306|consen 302 DVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCV 381 (888)
T ss_pred chhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEe
Confidence
Q ss_pred --------------------------------------------------------------------------CeeEEE
Q 041206 167 --------------------------------------------------------------------------SVNALV 172 (371)
Q Consensus 167 --------------------------------------------------------------------------~v~~~~ 172 (371)
.+.+++
T Consensus 382 S~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~ 461 (888)
T KOG0306|consen 382 SSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSIS 461 (888)
T ss_pred ecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeee
Confidence 678888
Q ss_pred EeCC--EEEEEeCCCeEEEEeccCCCC----c-----ceeeEEEecCcceEEEEecCCce-eEecccceeeeeCCCeEEE
Q 041206 173 VNND--LLFAGSEGGVISVWKGTFVAN----P-----FKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRT 240 (371)
Q Consensus 173 ~~~~--~l~~~~~dg~v~iwd~~~~~~----~-----~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~i 240 (371)
..|+ .+++|+.|.+|++||+.-... . .+...+++-...|.|+.+|||++ ++++ --|.+++|
T Consensus 462 ~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVs-------LLdnTVkV 534 (888)
T KOG0306|consen 462 LSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVS-------LLDNTVKV 534 (888)
T ss_pred ecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEE-------eccCeEEE
Confidence 8887 899999999999998653211 0 01112333333899999999998 7788 89999999
Q ss_pred EECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcc----eecceEEEEecCCCCEEEEecCCC
Q 041206 241 WNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNA----ELSSLFGMLDAEAKPVLFSSGKDS 314 (371)
Q Consensus 241 wd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~ 314 (371)
|-+.+.+..-.+.||.-||.|+..+ +++++|||.|.+|++|-+..+.... +-.++..+.+-|....+++++.|+
T Consensus 535 yflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~ 614 (888)
T KOG0306|consen 535 YFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDG 614 (888)
T ss_pred EEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcc
Confidence 9999999999999999999999988 6899999999999999999988633 234555666666777999999999
Q ss_pred eEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccc
Q 041206 315 AIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 315 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~ 365 (371)
.|+-||-...+.+..+. |...|++++.+|+| ++++++.|..|++|.-....
T Consensus 615 kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 615 KVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEI 667 (888)
T ss_pred eEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcc
Confidence 99999999999999988 68899999999999 99999999999999987643
No 31
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.2e-33 Score=250.23 Aligned_cols=264 Identities=16% Similarity=0.267 Sum_probs=219.8
Q ss_pred eEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEE---eec--CCEEEEecCCcEEEEEe
Q 041206 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCL---ISE--GSWVFLGLPNAVKSWRV 163 (371)
Q Consensus 89 ~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~i~~~~~ 163 (371)
..++..-...++|..|++|+.+||.|-.|..|++|.+...+ ++.++....+..+ ..+ ...+--..+++.+..--
T Consensus 371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 44555455679999999999999999999999999988543 2233322111111 000 00111123455666777
Q ss_pred CCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEE
Q 041206 164 NAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTR 239 (371)
Q Consensus 164 ~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~ 239 (371)
|+++|+...|+|+ +|++++.|+++++|.+.+. .++..+++|. +|..+.|+|-|. ++++ +.|++.+
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~----s~~V~y~GH~~PVwdV~F~P~GyYFata-------s~D~tAr 518 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW----SCLVIYKGHLAPVWDVQFAPRGYYFATA-------SHDQTAR 518 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeecccc----eeEEEecCCCcceeeEEecCCceEEEec-------CCCceee
Confidence 9999999999999 9999999999999999998 8899999999 999999999996 9999 9999999
Q ss_pred EEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC----cceecceEEEEecCCCCEEEEecCC
Q 041206 240 TWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN----NAELSSLFGMLDAEAKPVLFSSGKD 313 (371)
Q Consensus 240 iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~d 313 (371)
+|.....++++.+.+|.+.|.|+.|+ .+|+++||.|.++|+||+.++.. .++...+..+.+++.+++|++|+.|
T Consensus 519 LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed 598 (707)
T KOG0263|consen 519 LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDED 598 (707)
T ss_pred eeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccC
Confidence 99999999999999999999999999 46999999999999999887764 3444567777788888899999999
Q ss_pred CeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccc
Q 041206 314 SAIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 314 ~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
|.|.+||+.+++++..+. |.+.|.++.||.+| .||+|+.|..|++||+...
T Consensus 599 ~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 599 GLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999999888887 78999999999999 9999999999999998653
No 32
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-33 Score=249.74 Aligned_cols=281 Identities=16% Similarity=0.268 Sum_probs=240.8
Q ss_pred EEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEe
Q 041206 36 EREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGS 115 (371)
Q Consensus 36 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~ 115 (371)
..++..+.+|..++|+|.+.|+.. +-..+.|++|+ -.-+.++..|.+|.++|+.++|+|++.+++||+
T Consensus 3 tkfEskSsRvKglsFHP~rPwILt----slHsG~IQlWD--------YRM~tli~rFdeHdGpVRgv~FH~~qplFVSGG 70 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHPKRPWILT----SLHSGVIQLWD--------YRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGG 70 (1202)
T ss_pred chhhcccccccceecCCCCCEEEE----eecCceeeeeh--------hhhhhHHhhhhccCCccceeeecCCCCeEEecC
Confidence 345667888999999999999663 34567899999 344678899999999999999999999999999
Q ss_pred CCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEecc
Q 041206 116 RDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVWKGT 193 (371)
Q Consensus 116 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~ 193 (371)
.|-.|++|+..+.+++.++..+ -.-|..+.|++. ++++++.|.+|+||+..
T Consensus 71 DDykIkVWnYk~rrclftL~GH---------------------------lDYVRt~~FHheyPWIlSASDDQTIrIWNwq 123 (1202)
T KOG0292|consen 71 DDYKIKVWNYKTRRCLFTLLGH---------------------------LDYVRTVFFHHEYPWILSASDDQTIRIWNWQ 123 (1202)
T ss_pred CccEEEEEecccceehhhhccc---------------------------cceeEEeeccCCCceEEEccCCCeEEEEecc
Confidence 9999999999999999888764 335889999998 99999999999999999
Q ss_pred CCCCcceeeEEEecCc-ceEEEEecCCc-eeEecccceeeeeCCCeEEEEECCCc-------------------------
Q 041206 194 FVANPFKQVASIRAPL-WFCSLSSSNDT-RWNSKEEAAVFEFCGHTTRTWNLDNL------------------------- 246 (371)
Q Consensus 194 ~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~l~~~~~~~~~~~~dg~i~iwd~~~~------------------------- 246 (371)
+. +++..+.+|+ .|.|..|+|.. .++++ +-|.+|+|||+...
T Consensus 124 sr----~~iavltGHnHYVMcAqFhptEDlIVSa-------SLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg 192 (1202)
T KOG0292|consen 124 SR----KCIAVLTGHNHYVMCAQFHPTEDLIVSA-------SLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFG 192 (1202)
T ss_pred CC----ceEEEEecCceEEEeeccCCccceEEEe-------cccceEEEEeecchhccCCCCCCchhhhhccccchhhcC
Confidence 99 8999999999 99999999954 58999 99999999998631
Q ss_pred ----eEEEEeecCCCcEEEEEEcC--CeEEEEeCCCcEEEEEccCCC------CcceecceEEEEecCCCCEEEEecCCC
Q 041206 247 ----ECVQTLKGHSDTVTSLLFWD--EYLFSSSLDETIKIWLYTHTK------NNAELSSLFGMLDAEAKPVLFSSGKDS 314 (371)
Q Consensus 247 ----~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~d~ 314 (371)
-..+.+.+|...|+-++|++ ..+++|+.|..|++|.+...+ ..++.+.+.++.+.+.+.++++.++|+
T Consensus 193 ~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDk 272 (1202)
T KOG0292|consen 193 QTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDK 272 (1202)
T ss_pred CcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCc
Confidence 01256789999999999997 799999999999999976544 366777888888888888999999999
Q ss_pred eEEEEEcCCcceeeeecC-CceEEEEEeCCCCeEEeeCCCCcEEEEEccccce
Q 041206 315 AIRLYELPSFKLRARIFS-RREVEVDQIGPAGLFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 315 ~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~~~~~ 366 (371)
.|+|||+...+.+..+.. ++..+.++.+|..-|++++.|+-+.||.++..++
T Consensus 273 sirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 273 SIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERP 325 (1202)
T ss_pred cEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCc
Confidence 999999999999988874 7789999999999445555777888888875443
No 33
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.6e-33 Score=227.53 Aligned_cols=282 Identities=16% Similarity=0.172 Sum_probs=233.6
Q ss_pred EEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEE
Q 041206 35 EEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSG 114 (371)
Q Consensus 35 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~ 114 (371)
.+.+..|++.|.-+.|++.+.+++ +++.+...-+|....+ ...++.+++.||..+|.-+.||||.++|++|
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLA----saSkD~Taiiw~v~~d-----~~~kl~~tlvgh~~~V~yi~wSPDdryLlaC 287 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLA----SASKDSTAIIWIVVYD-----VHFKLKKTLVGHSQPVSYIMWSPDDRYLLAC 287 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEe----eccCCceEEEEEEecC-----cceeeeeeeecccCceEEEEECCCCCeEEec
Confidence 355788999999999999887765 3567777777875544 3378899999999999999999999999999
Q ss_pred eCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEec
Q 041206 115 SRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVWKG 192 (371)
Q Consensus 115 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~ 192 (371)
+.|..+++||+.+|.+...++.+. ...+.+++|.|+ .+++|+.|+.+..||+
T Consensus 288 g~~e~~~lwDv~tgd~~~~y~~~~--------------------------~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdl 341 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGDLRHLYPSGL--------------------------GFSVSSCAWCPDGFRFVTGSPDRTIIMWDL 341 (519)
T ss_pred CchHheeeccCCcchhhhhcccCc--------------------------CCCcceeEEccCCceeEecCCCCcEEEecC
Confidence 999999999999999988887541 235889999999 9999999999999999
Q ss_pred cCCCCcceeeEEEecCc--ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CC
Q 041206 193 TFVANPFKQVASIRAPL--WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DE 267 (371)
Q Consensus 193 ~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~ 267 (371)
... .....++-. .|.+++..+||+ +++. +.|..|++++.++......+. -..+|++.+.+ ++
T Consensus 342 Dgn-----~~~~W~gvr~~~v~dlait~Dgk~vl~v-------~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k 408 (519)
T KOG0293|consen 342 DGN-----ILGNWEGVRDPKVHDLAITYDGKYVLLV-------TVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGK 408 (519)
T ss_pred Ccc-----hhhcccccccceeEEEEEcCCCcEEEEE-------ecccceeeechhhhhhhcccc-ccCceeEEEEcCCCc
Confidence 875 455555554 799999999997 7777 899999999998766554444 45689999998 67
Q ss_pred eEEEEeCCCcEEEEEccCCCC-------cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEE
Q 041206 268 YLFSSSLDETIKIWLYTHTKN-------NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVD 339 (371)
Q Consensus 268 ~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~ 339 (371)
++++.-.+..+++||++.... ....--+..++-..+..++++|++|+.|+||+..+++++..+. |...|+++
T Consensus 409 ~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcV 488 (519)
T KOG0293|consen 409 LALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCV 488 (519)
T ss_pred EEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEE
Confidence 888888999999999874432 2112245555666666799999999999999999999999998 67899999
Q ss_pred EeCCCC--eEEeeCCCCcEEEEEcccc
Q 041206 340 QIGPAG--LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 340 ~~s~~~--~l~~~~~dg~i~iw~~~~~ 364 (371)
+|+|.. .+|+++.||+|+||.....
T Consensus 489 swNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 489 SWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 999988 9999999999999998754
No 34
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-33 Score=227.59 Aligned_cols=249 Identities=19% Similarity=0.248 Sum_probs=217.0
Q ss_pred CCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEe
Q 041206 84 NSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRV 163 (371)
Q Consensus 84 ~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 163 (371)
+.+.+.+.+.||..+|+.+-|+|+-..+++++.|++|++||..+++++..++.
T Consensus 96 pRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrG--------------------------- 148 (406)
T KOG0295|consen 96 PRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRG--------------------------- 148 (406)
T ss_pred CCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhc---------------------------
Confidence 55667888999999999999999999999999999999999999999888876
Q ss_pred CCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEE
Q 041206 164 NAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTR 239 (371)
Q Consensus 164 ~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~ 239 (371)
|+..+.+++|+.. ++++++.|-.+++||..+. ++++..+.+|. .|.+++|-|.|. ++++ +.|.+|+
T Consensus 149 Ht~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~---~~c~ks~~gh~h~vS~V~f~P~gd~ilS~-------srD~tik 218 (406)
T KOG0295|consen 149 HTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF---FRCIKSLIGHEHGVSSVFFLPLGDHILSC-------SRDNTIK 218 (406)
T ss_pred cccceeEEEEecCccEEEecCCccchhheeHHHH---HHHHHHhcCcccceeeEEEEecCCeeeec-------cccccee
Confidence 5556899999877 9999999999999999875 37888899999 999999999885 8999 9999999
Q ss_pred EEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC-------cceecceEEE------------
Q 041206 240 TWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN-------NAELSSLFGM------------ 298 (371)
Q Consensus 240 iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~------------ 298 (371)
.|++.++-++++|.+|...|..++.+ +.++++++.|.++++|-+.+.+. ..++.++...
T Consensus 219 ~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at 298 (406)
T KOG0295|consen 219 AWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEAT 298 (406)
T ss_pred EEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhcc
Confidence 99999999999999999999999998 78999999999999999877732 2222222211
Q ss_pred EecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccceecc
Q 041206 299 LDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQKM 369 (371)
Q Consensus 299 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~~~ 369 (371)
...++++++.+++.|++|++||+.++.++.++. |.+.|..++|+|.| +|+++.+|+++++||+++.++.+.
T Consensus 299 ~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~ 371 (406)
T KOG0295|consen 299 GSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT 371 (406)
T ss_pred CCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec
Confidence 011234589999999999999999999999998 68999999999999 999999999999999999887664
No 35
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.2e-31 Score=228.12 Aligned_cols=275 Identities=26% Similarity=0.400 Sum_probs=226.2
Q ss_pred EEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEe
Q 041206 36 EREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGS 115 (371)
Q Consensus 36 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~ 115 (371)
..+++|...|.+++++|...++. .+..++.+.+|+. ...+....+.+|...+..+.|+|+++++++++
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~----~~~~~g~i~i~~~--------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 70 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLA----TGSGDGTIKVWDL--------ETGELLRTLKGHTGPVRDVAASADGTYLASGS 70 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEE----EeecCcEEEEEEe--------eCCCcEEEEecCCcceeEEEECCCCCEEEEEc
Confidence 45679999999999999754332 3456889999993 34457788899999999999999999999999
Q ss_pred CCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEecc
Q 041206 116 RDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVWKGT 193 (371)
Q Consensus 116 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~ 193 (371)
.||.|++||+.+++....+.. +...+.++.++++ ++++++.++.|.+||+.
T Consensus 71 ~~~~i~i~~~~~~~~~~~~~~---------------------------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 71 SDKTIRLWDLETGECVRTLTG---------------------------HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred CCCeEEEEEcCcccceEEEec---------------------------cCCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 999999999998766655543 3345889999986 67777779999999999
Q ss_pred CCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEcC--CeE
Q 041206 194 FVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWD--EYL 269 (371)
Q Consensus 194 ~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~l 269 (371)
+. +....+..|. .+.+++++|++. ++++ +.++.|++||+++++.+..+..|...+.++.|++ +.+
T Consensus 124 ~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~-------~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 192 (289)
T cd00200 124 TG----KCLTTLRGHTDWVNSVAFSPDGTFVASS-------SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKL 192 (289)
T ss_pred Cc----EEEEEeccCCCcEEEEEEcCcCCEEEEE-------cCCCcEEEEEccccccceeEecCccccceEEECCCcCEE
Confidence 77 7777888888 999999999876 5555 5599999999999999999999999999999994 489
Q ss_pred EEEeCCCcEEEEEccCCCCc----ceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCC
Q 041206 270 FSSSLDETIKIWLYTHTKNN----AELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPA 344 (371)
Q Consensus 270 ~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~ 344 (371)
++++.|+.+++||++..+.. .....+..+.+.+++.++++++.++.|++||+.+++....+. +...+.+++|+|+
T Consensus 193 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~ 272 (289)
T cd00200 193 LSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPD 272 (289)
T ss_pred EEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCC
Confidence 99999999999998764432 122245555566656688888889999999999888777776 5678999999999
Q ss_pred C-eEEeeCCCCcEEEEE
Q 041206 345 G-LFFPGDASGSVGVWK 360 (371)
Q Consensus 345 ~-~l~~~~~dg~i~iw~ 360 (371)
+ .|++++.||.|++|+
T Consensus 273 ~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 273 GKRLASGSADGTIRIWD 289 (289)
T ss_pred CCEEEEecCCCeEEecC
Confidence 8 999999999999996
No 36
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=8.1e-34 Score=219.16 Aligned_cols=280 Identities=16% Similarity=0.168 Sum_probs=230.7
Q ss_pred EEEEeeccceeeeeeee---cceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEE
Q 041206 36 EREEMFGFGLAAMAIRV---CNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLY 112 (371)
Q Consensus 36 ~~~~~h~~~v~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~ 112 (371)
....+|+..|..++++| ..+|+...|. |+.--+- ..+++.-+.+|.||.+.|.+..++.+..+.|
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~k----d~~pmlr--------~g~tgdwigtfeghkgavw~~~l~~na~~aa 75 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASK----DGKPMLR--------NGDTGDWIGTFEGHKGAVWSATLNKNATRAA 75 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEecc----CCCchhc--------cCCCCCcEEeeeccCcceeeeecCchhhhhh
Confidence 35689999999999886 3444443322 2221111 2567788999999999999999999999999
Q ss_pred EEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEE
Q 041206 113 SGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVW 190 (371)
Q Consensus 113 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iw 190 (371)
+++.|-+-++||.-+|..+..+.+.. -|.+++|+.+ +|++|+.+.-++||
T Consensus 76 saaadftakvw~a~tgdelhsf~hkh----------------------------ivk~~af~~ds~~lltgg~ekllrvf 127 (334)
T KOG0278|consen 76 SAAADFTAKVWDAVTGDELHSFEHKH----------------------------IVKAVAFSQDSNYLLTGGQEKLLRVF 127 (334)
T ss_pred hhcccchhhhhhhhhhhhhhhhhhhh----------------------------eeeeEEecccchhhhccchHHHhhhh
Confidence 99999999999999999988887533 3889999988 99999999999999
Q ss_pred eccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc-CC
Q 041206 191 KGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW-DE 267 (371)
Q Consensus 191 d~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~ 267 (371)
|++... .+...+.+|. .|..+.|....+ ++++ +.|++|++||.++++.++++. -..+|+++.++ +.
T Consensus 128 dln~p~---App~E~~ghtg~Ir~v~wc~eD~~iLSS-------add~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG 196 (334)
T KOG0278|consen 128 DLNRPK---APPKEISGHTGGIRTVLWCHEDKCILSS-------ADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDG 196 (334)
T ss_pred hccCCC---CCchhhcCCCCcceeEEEeccCceEEee-------ccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCC
Confidence 999875 5677889999 999999988665 8998 999999999999999999998 46789999998 66
Q ss_pred eEEEEeCCCcEEEEEccCCCCc---ceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeee-c-CCceEEEEEeC
Q 041206 268 YLFSSSLDETIKIWLYTHTKNN---AELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARI-F-SRREVEVDQIG 342 (371)
Q Consensus 268 ~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~-~~~~v~~~~~s 342 (371)
.+++....+.|++||....... .....+......|....+++|++|..++.||..+++.+..+ . |.++|.|+.|+
T Consensus 197 ~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFS 276 (334)
T KOG0278|consen 197 RILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFS 276 (334)
T ss_pred CEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEEC
Confidence 7777788889999997665432 22234444445555569999999999999999999988875 3 68999999999
Q ss_pred CCC-eEEeeCCCCcEEEEEccccce
Q 041206 343 PAG-LFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 343 ~~~-~l~~~~~dg~i~iw~~~~~~~ 366 (371)
|+| ..++|+.||+|++|....++.
T Consensus 277 PdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 277 PDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred CCCceeeccCCCceEEEEEecCCCc
Confidence 999 999999999999999876553
No 37
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-32 Score=208.41 Aligned_cols=242 Identities=17% Similarity=0.196 Sum_probs=209.7
Q ss_pred eeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCC
Q 041206 87 ATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAA 166 (371)
Q Consensus 87 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 166 (371)
+.++.+..|+++|.++.|+-+|+|.++++.|.+|++|+.-.|.+++++..++.
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~--------------------------- 60 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGH--------------------------- 60 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCc---------------------------
Confidence 45778999999999999999999999999999999999999999999887443
Q ss_pred CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEE
Q 041206 167 SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWN 242 (371)
Q Consensus 167 ~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd 242 (371)
+|..++.+.+ .+++++.|..+.+||++++ +..+.+++|. .|+.++|+.+.. +++| +.|.++++||
T Consensus 61 EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG----kv~Rr~rgH~aqVNtV~fNeesSVv~Sg-------sfD~s~r~wD 129 (307)
T KOG0316|consen 61 EVLDAALSSDNSKFASCGGDKAVQVWDVNTG----KVDRRFRGHLAQVNTVRFNEESSVVASG-------SFDSSVRLWD 129 (307)
T ss_pred eeeeccccccccccccCCCCceEEEEEcccC----eeeeecccccceeeEEEecCcceEEEec-------cccceeEEEE
Confidence 5777777665 9999999999999999999 8999999999 999999999886 8999 9999999999
Q ss_pred CCC--ceEEEEeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCCc--ceecceEEEEecCCCCEEEEecCCCeEEE
Q 041206 243 LDN--LECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKNN--AELSSLFGMLDAEAKPVLFSSGKDSAIRL 318 (371)
Q Consensus 243 ~~~--~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~i 318 (371)
.++ .++++.+....+.|.++...+..+++|+.||++|.||++.++.. ..-.+++++.++++++..++++.|+++++
T Consensus 130 CRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrL 209 (307)
T KOG0316|consen 130 CRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRL 209 (307)
T ss_pred cccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeee
Confidence 986 56889999889999999999999999999999999999988752 22235566667777779999999999999
Q ss_pred EEcCCcceeeeecC-C--ceEEEEEeCCCC-eEEeeCCCCcEEEEEccccce
Q 041206 319 YELPSFKLRARIFS-R--REVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 319 wd~~~~~~~~~~~~-~--~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~ 366 (371)
.|-.+++++..+++ . +.-...+++... .+++|++||.|++||+.....
T Consensus 210 lDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 210 LDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred cccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecccee
Confidence 99999999998884 2 233444565555 999999999999999987643
No 38
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.6e-31 Score=207.81 Aligned_cols=265 Identities=13% Similarity=0.125 Sum_probs=218.5
Q ss_pred eeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEE
Q 041206 33 RAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLY 112 (371)
Q Consensus 33 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~ 112 (371)
+..+.+++|...|.++.+++.... +++++.++.+-+|+ .. +...++-+.-....|..++|+|.++++|
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~----ivSaSqDGklIvWD-------s~-TtnK~haipl~s~WVMtCA~sPSg~~VA 113 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRR----IVSASQDGKLIVWD-------SF-TTNKVHAIPLPSSWVMTCAYSPSGNFVA 113 (343)
T ss_pred eeEEEecccccceeeeEecCCcCe----EEeeccCCeEEEEE-------cc-cccceeEEecCceeEEEEEECCCCCeEE
Confidence 344779999999999999996553 44578999999999 33 3345666777789999999999999999
Q ss_pred EEeCCCcEEEEECCCC------ceEEEEeCC-CeeEEEee-cCCEEE-EecCCcEEEEEeCCC-----------CeeEEE
Q 041206 113 SGSRDGRVSVWDRDSG------RCVNVITNG-AEIGCLIS-EGSWVF-LGLPNAVKSWRVNAA-----------SVNALV 172 (371)
Q Consensus 113 s~~~dg~v~iwd~~~~------~~~~~~~~~-~~~~~~~~-~~~~~~-~~~~~~i~~~~~~~~-----------~v~~~~ 172 (371)
.|+-|....||++.+. +..+.+..+ ..+.|..+ ++..++ .+.|.+..+||++++ .|.+++
T Consensus 114 cGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~sls 193 (343)
T KOG0286|consen 114 CGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLS 193 (343)
T ss_pred ecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEe
Confidence 9999999999999855 233344443 34555544 444444 467899999999666 899999
Q ss_pred EeC-C--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCce
Q 041206 173 VNN-D--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLE 247 (371)
Q Consensus 173 ~~~-~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~ 247 (371)
+.| + .+++|+-|+..++||++.+ .+.++|.+|. .|+++.|.|+|. +++| +.|++.++||++..+
T Consensus 194 l~p~~~ntFvSg~cD~~aklWD~R~~----~c~qtF~ghesDINsv~ffP~G~afatG-------SDD~tcRlyDlRaD~ 262 (343)
T KOG0286|consen 194 LSPSDGNTFVSGGCDKSAKLWDVRSG----QCVQTFEGHESDINSVRFFPSGDAFATG-------SDDATCRLYDLRADQ 262 (343)
T ss_pred cCCCCCCeEEecccccceeeeeccCc----ceeEeecccccccceEEEccCCCeeeec-------CCCceeEEEeecCCc
Confidence 998 3 9999999999999999999 8999999999 999999999997 9999 999999999999988
Q ss_pred EEEEeec--CCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC----cceecceEEEEecCCCCEEEEecCCCeEEEE
Q 041206 248 CVQTLKG--HSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN----NAELSSLFGMLDAEAKPVLFSSGKDSAIRLY 319 (371)
Q Consensus 248 ~~~~~~~--~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 319 (371)
.+..+.. ...+|++++|+ +++|++|..|.++.+||.-..+. .++-+.+.++...+++.-+++|+.|.+++||
T Consensus 263 ~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 263 ELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred EEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeec
Confidence 8877762 23489999999 89999999999999999665554 3444567777778888799999999999999
Q ss_pred E
Q 041206 320 E 320 (371)
Q Consensus 320 d 320 (371)
.
T Consensus 343 ~ 343 (343)
T KOG0286|consen 343 A 343 (343)
T ss_pred C
Confidence 4
No 39
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-31 Score=204.26 Aligned_cols=273 Identities=19% Similarity=0.224 Sum_probs=225.3
Q ss_pred EEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEE
Q 041206 35 EEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSG 114 (371)
Q Consensus 35 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~ 114 (371)
.+.+..|...|.++.++..+.+ |...+.++.+++|+ +..+.+++++.||...|..++.+.|...+++|
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY----~ltcGsdrtvrLWN--------p~rg~liktYsghG~EVlD~~~s~Dnskf~s~ 77 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNY----CLTCGSDRTVRLWN--------PLRGALIKTYSGHGHEVLDAALSSDNSKFASC 77 (307)
T ss_pred ceeecccccceEEEEEccCCCE----EEEcCCCceEEeec--------ccccceeeeecCCCceeeeccccccccccccC
Confidence 4567789999999999886664 45578999999999 67889999999999999999999999999999
Q ss_pred eCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEec
Q 041206 115 SRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVWKG 192 (371)
Q Consensus 115 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~ 192 (371)
+.|..+.+||+.+|+..+.+.. |.++|+.+.|+.+ .+++|+.|..+++||.
T Consensus 78 GgDk~v~vwDV~TGkv~Rr~rg---------------------------H~aqVNtV~fNeesSVv~SgsfD~s~r~wDC 130 (307)
T KOG0316|consen 78 GGDKAVQVWDVNTGKVDRRFRG---------------------------HLAQVNTVRFNEESSVVASGSFDSSVRLWDC 130 (307)
T ss_pred CCCceEEEEEcccCeeeeeccc---------------------------ccceeeEEEecCcceEEEeccccceeEEEEc
Confidence 9999999999999999998886 4557999999988 9999999999999999
Q ss_pred cCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeE
Q 041206 193 TFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYL 269 (371)
Q Consensus 193 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l 269 (371)
+.... ++++.+.... .|.++.... ..+++| +.||+++.||++.|+....+-+ .+|++++|+ ++..
T Consensus 131 RS~s~--ePiQildea~D~V~Si~v~~-heIvaG-------S~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~ 198 (307)
T KOG0316|consen 131 RSRSF--EPIQILDEAKDGVSSIDVAE-HEIVAG-------SVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCS 198 (307)
T ss_pred ccCCC--CccchhhhhcCceeEEEecc-cEEEee-------ccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEE
Confidence 98643 7888888777 899888875 458888 9999999999999988766654 489999999 7899
Q ss_pred EEEeCCCcEEEEEccCCCC-------cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecCC-ce-EEEEE
Q 041206 270 FSSSLDETIKIWLYTHTKN-------NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSR-RE-VEVDQ 340 (371)
Q Consensus 270 ~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~-v~~~~ 340 (371)
+.++.|+++++.|-.+++. ...-..+.+...... ..+++|++||.|++||+.....+..+.+. .. |.+++
T Consensus 199 La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsd-thV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~ 277 (307)
T KOG0316|consen 199 LASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSD-THVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLS 277 (307)
T ss_pred EEeeccceeeecccchhHHHHHhcccccceeeeeeeecccc-eeEEeccCCceEEEEEeccceeeeeeccCCceeEEeee
Confidence 9999999999999766552 222223333344433 48999999999999999999998888853 33 78999
Q ss_pred eCCCC-eEEeeCCCCcEEEEE
Q 041206 341 IGPAG-LFFPGDASGSVGVWK 360 (371)
Q Consensus 341 ~s~~~-~l~~~~~dg~i~iw~ 360 (371)
++|.- .|+++.. +.+..|.
T Consensus 278 ~hp~~~~f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 278 CHPTMDDFITATG-HGDLFWY 297 (307)
T ss_pred cccCccceeEecC-Cceecee
Confidence 99988 5555543 3455554
No 40
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.6e-34 Score=233.34 Aligned_cols=258 Identities=14% Similarity=0.294 Sum_probs=224.9
Q ss_pred ccCCCCceeeccCcc-------cccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCc
Q 041206 14 KHSEGGETMMSDDDD-------LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSL 86 (371)
Q Consensus 14 ~~sp~g~~l~~~~~d-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (371)
...|+|+.|.+|... ...-.....++.|.+.|.++.+++...|. ++++.++.|+.|. ..+
T Consensus 103 ~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wm----iSgD~gG~iKyWq---------pnm 169 (464)
T KOG0284|consen 103 RWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWM----ISGDKGGMIKYWQ---------PNM 169 (464)
T ss_pred EEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEE----EEcCCCceEEecc---------cch
Confidence 468999999888765 22233344578999999999999977763 3588999999999 667
Q ss_pred eeeEeeeCcc-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCC
Q 041206 87 ATLMKLNGHK-KAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNA 165 (371)
Q Consensus 87 ~~~~~l~~h~-~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 165 (371)
..++.+++|. ..|++++|+|+...++|||.||+|+|||....+....+.. |.
T Consensus 170 nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~G---------------------------Hg 222 (464)
T KOG0284|consen 170 NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRG---------------------------HG 222 (464)
T ss_pred hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheecc---------------------------CC
Confidence 7788888877 8999999999999999999999999999988877776665 33
Q ss_pred CCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEE
Q 041206 166 ASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTW 241 (371)
Q Consensus 166 ~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iw 241 (371)
-.|.++.|+|. ++++|+.|..|++||.+++ .++.++..|. .|..+.|++++. |+++ +.|..++++
T Consensus 223 wdVksvdWHP~kgLiasgskDnlVKlWDprSg----~cl~tlh~HKntVl~~~f~~n~N~Llt~-------skD~~~kv~ 291 (464)
T KOG0284|consen 223 WDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG----SCLATLHGHKNTVLAVKFNPNGNWLLTG-------SKDQSCKVF 291 (464)
T ss_pred CCcceeccCCccceeEEccCCceeEeecCCCc----chhhhhhhccceEEEEEEcCCCCeeEEc-------cCCceEEEE
Confidence 46999999999 9999999999999999999 8999999999 999999999986 8999 999999999
Q ss_pred ECCCceEEEEeecCCCcEEEEEEc---CCeEEEEeCCCcEEEEEccCCCC-----cceecceEEEEecCCCCEEEEecCC
Q 041206 242 NLDNLECVQTLKGHSDTVTSLLFW---DEYLFSSSLDETIKIWLYTHTKN-----NAELSSLFGMLDAEAKPVLFSSGKD 313 (371)
Q Consensus 242 d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~d 313 (371)
|+++.+.++++++|...|+++.|+ +++|.+|+.||.|..|.+...++ ..+...+..+.+.+-+.+|++|+.|
T Consensus 292 DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd 371 (464)
T KOG0284|consen 292 DIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSND 371 (464)
T ss_pred ehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCC
Confidence 999999999999999999999999 68999999999999999875443 4455678888889988899999999
Q ss_pred CeEEEEEcC
Q 041206 314 SAIRLYELP 322 (371)
Q Consensus 314 ~~i~iwd~~ 322 (371)
.++++|.-.
T Consensus 372 ~t~rfw~r~ 380 (464)
T KOG0284|consen 372 RTVRFWTRN 380 (464)
T ss_pred cceeeeccC
Confidence 999999754
No 41
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.7e-31 Score=240.80 Aligned_cols=264 Identities=27% Similarity=0.381 Sum_probs=223.8
Q ss_pred eccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC
Q 041206 57 ISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN 136 (371)
Q Consensus 57 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 136 (371)
..+.+..+..+++|+.|+ ..+.......+.||.+.|.+++|...+.+|++|+.|.++++||..+|+|..++..
T Consensus 217 ~~~~~~~~s~~~tl~~~~-------~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~g 289 (537)
T KOG0274|consen 217 HDGFFKSGSDDSTLHLWD-------LNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQG 289 (537)
T ss_pred ecCeEEecCCCceeEEee-------cccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecC
Confidence 345566689999999999 4444444445999999999999988889999999999999999999999999986
Q ss_pred CCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEE
Q 041206 137 GAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLS 215 (371)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~ 215 (371)
|+..|.++...+..+++|+.|.+|++|++.++ ..+..+.+|. +|+++.
T Consensus 290 ---------------------------h~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~----~~l~l~~~h~~~V~~v~ 338 (537)
T KOG0274|consen 290 ---------------------------HTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNG----ACLNLLRGHTGPVNCVQ 338 (537)
T ss_pred ---------------------------CCceEEEEEccCceEeeccCCceEEEEeccCc----ceEEEeccccccEEEEE
Confidence 34458888888889999999999999999998 8899999898 999999
Q ss_pred ecCCceeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEcC-CeEEEEeCCCcEEEEEccCC-CCcceec
Q 041206 216 SSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWD-EYLFSSSLDETIKIWLYTHT-KNNAELS 293 (371)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~~-~~~~~~~ 293 (371)
.. .+.+++| +.|++|++||+.++++++.+.+|...|.++.+.+ +++++|+.|++|++||++.. +......
T Consensus 339 ~~-~~~lvsg-------s~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~ 410 (537)
T KOG0274|consen 339 LD-EPLLVSG-------SYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQ 410 (537)
T ss_pred ec-CCEEEEE-------ecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhc
Confidence 99 4679999 9999999999999999999999999999999998 99999999999999999988 4321111
Q ss_pred ---ceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecC--CceEEEEEeCCCCeEEeeCCCCcEEEEEccccceec
Q 041206 294 ---SLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFS--RREVEVDQIGPAGLFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 294 ---~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
.+...... ..++|++++.|++|++||..+++++..+.+ ...|..+++. +..+++++.||.+++||+.++++.+
T Consensus 411 ~h~~~v~~l~~-~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 411 GHTSLVSSLLL-RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred CCccccccccc-ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC-cceEEEEecCCeeEEEecccCchhh
Confidence 11111112 234899999999999999999999998886 3788888886 2288899999999999999887654
No 42
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.2e-30 Score=252.70 Aligned_cols=281 Identities=15% Similarity=0.167 Sum_probs=216.2
Q ss_pred EEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcC-CCCEEEEEeC
Q 041206 38 EEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPS-GSNKLYSGSR 116 (371)
Q Consensus 38 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~~~ 116 (371)
+..|...|.+++|++...++ ..++.++.|++|+....-........+...+.+ ...|.+++|+| ++.+|++++.
T Consensus 479 ~~~~~~~V~~i~fs~dg~~l----atgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~ 553 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFF----ATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNF 553 (793)
T ss_pred ccCCCCcEEEEEECCCCCEE----EEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeC
Confidence 34589999999999966543 346789999999943210000001112334443 46899999987 5789999999
Q ss_pred CCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeC-C--EEEEEeCCCeEEEEecc
Q 041206 117 DGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNN-D--LLFAGSEGGVISVWKGT 193 (371)
Q Consensus 117 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~-~--~l~~~~~dg~v~iwd~~ 193 (371)
||+|++||+.+++.+..+.. |.+.|++++|+| + +|++|+.||.|++||++
T Consensus 554 Dg~v~lWd~~~~~~~~~~~~---------------------------H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~ 606 (793)
T PLN00181 554 EGVVQVWDVARSQLVTEMKE---------------------------HEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN 606 (793)
T ss_pred CCeEEEEECCCCeEEEEecC---------------------------CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC
Confidence 99999999998887776654 556799999986 3 89999999999999999
Q ss_pred CCCCcceeeEEEecCcceEEEEecC-Cce-eEecccceeeeeCCCeEEEEECCCce-EEEEeecCCCcEEEEEEc-CCeE
Q 041206 194 FVANPFKQVASIRAPLWFCSLSSSN-DTR-WNSKEEAAVFEFCGHTTRTWNLDNLE-CVQTLKGHSDTVTSLLFW-DEYL 269 (371)
Q Consensus 194 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~-~~~l 269 (371)
++ ..+..+..+..+.++.|++ ++. +++| +.||.|++||+++.+ ++..+.+|...|.++.|. +.+|
T Consensus 607 ~~----~~~~~~~~~~~v~~v~~~~~~g~~latg-------s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~l 675 (793)
T PLN00181 607 QG----VSIGTIKTKANICCVQFPSESGRSLAFG-------SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTL 675 (793)
T ss_pred CC----cEEEEEecCCCeEEEEEeCCCCCEEEEE-------eCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEE
Confidence 87 6677776655899999965 565 8899 999999999998765 567888999999999998 7899
Q ss_pred EEEeCCCcEEEEEccCCC------C----cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeee---------
Q 041206 270 FSSSLDETIKIWLYTHTK------N----NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARI--------- 330 (371)
Q Consensus 270 ~s~~~dg~i~iwd~~~~~------~----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--------- 330 (371)
++++.|++|++||++... . .++...+..+.+.+.+.+|++|+.|+.|++|+.....++..+
T Consensus 676 vs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~ 755 (793)
T PLN00181 676 VSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVS 755 (793)
T ss_pred EEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccc
Confidence 999999999999987432 1 111222334445555669999999999999998765433221
Q ss_pred -----cCCceEEEEEeCCCC-eEEeeCCCCcEEEEEc
Q 041206 331 -----FSRREVEVDQIGPAG-LFFPGDASGSVGVWKW 361 (371)
Q Consensus 331 -----~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~ 361 (371)
.+...|.+++|+|++ .|++|+.||.|+||++
T Consensus 756 ~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 756 GLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 124579999999999 9999999999999996
No 43
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=9.7e-34 Score=228.50 Aligned_cols=227 Identities=22% Similarity=0.338 Sum_probs=198.1
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEe
Q 041206 95 HKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVN 174 (371)
Q Consensus 95 h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~ 174 (371)
....|+|+.+. ...+++|..|.+|+|||..+..+++.+.. |++.|.|+.+.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~G---------------------------HtGSVLCLqyd 246 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTG---------------------------HTGSVLCLQYD 246 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhc---------------------------CCCcEEeeecc
Confidence 45689999985 56899999999999999999888887775 77889999999
Q ss_pred CCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceE---EE
Q 041206 175 NDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLEC---VQ 250 (371)
Q Consensus 175 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~---~~ 250 (371)
...+++|+.|.+|++||.+++ +++.++-.|. .|..+.|+. |.++++ +.|.++.+||+..... .+
T Consensus 247 ~rviisGSSDsTvrvWDv~tg----e~l~tlihHceaVLhlrf~n-g~mvtc-------SkDrsiaVWdm~sps~it~rr 314 (499)
T KOG0281|consen 247 ERVIVSGSSDSTVRVWDVNTG----EPLNTLIHHCEAVLHLRFSN-GYMVTC-------SKDRSIAVWDMASPTDITLRR 314 (499)
T ss_pred ceEEEecCCCceEEEEeccCC----chhhHHhhhcceeEEEEEeC-CEEEEe-------cCCceeEEEeccCchHHHHHH
Confidence 999999999999999999999 8999999999 999999987 789999 9999999999987543 35
Q ss_pred EeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCC----cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcce
Q 041206 251 TLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKN----NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKL 326 (371)
Q Consensus 251 ~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 326 (371)
.+.+|...|+.+.|+++++++++.|.+|++|+..+.+- .++...+++..+ .++++++|+.|.+|++||+..+.+
T Consensus 315 VLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~c 392 (499)
T KOG0281|consen 315 VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGAC 392 (499)
T ss_pred HHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHH
Confidence 67899999999999999999999999999999887764 344445554444 345899999999999999999999
Q ss_pred eeeec-CCceEEEEEeCCCCeEEeeCCCCcEEEEEccccc
Q 041206 327 RARIF-SRREVEVDQIGPAGLFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 327 ~~~~~-~~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~~~~ 365 (371)
+..+. |.+-|.++.|... .+++|+.||+|+|||+..+.
T Consensus 393 LRvLeGHEeLvRciRFd~k-rIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 393 LRVLEGHEELVRCIRFDNK-RIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred HHHHhchHHhhhheeecCc-eeeeccccceEEEEeccccc
Confidence 98887 5778999999543 89999999999999998754
No 44
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1e-30 Score=212.24 Aligned_cols=271 Identities=16% Similarity=0.192 Sum_probs=226.3
Q ss_pred eeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-CeeEEEee--cCCEEEEe-cCCcEEEEE
Q 041206 87 ATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNG-AEIGCLIS--EGSWVFLG-LPNAVKSWR 162 (371)
Q Consensus 87 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~-~~~~i~~~~ 162 (371)
.-+.+|..|++.|.+++.+|+.++++||+.|..-.+|++.++.....+..+ ..+.++.| ++.+++++ .++.|++|+
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 357889999999999999999999999999999999999999988877764 55777665 68888886 589999999
Q ss_pred eCCC-----------CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEeccc
Q 041206 163 VNAA-----------SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEE 227 (371)
Q Consensus 163 ~~~~-----------~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~ 227 (371)
..++ .+.=+.|+|. .|+.|+.||.+.+|.+.+. ...+.+.+|+ ++++=.|.|+|+ ++++
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~----~~~kv~~Gh~~~ct~G~f~pdGKr~~tg-- 208 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ----ALCKVMSGHNSPCTCGEFIPDGKRILTG-- 208 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc----ceeeEecCCCCCcccccccCCCceEEEE--
Confidence 9888 3444677888 9999999999999999987 6888999999 999999999996 8999
Q ss_pred ceeeeeCCCeEEEEECCCceEEEEeecC-CCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCC---------------Cc
Q 041206 228 AAVFEFCGHTTRTWNLDNLECVQTLKGH-SDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTK---------------NN 289 (371)
Q Consensus 228 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~---------------~~ 289 (371)
..||+|++|++.+++++..+..- ..+..++.++ +..+++|+.++.+++-.....+ +.
T Consensus 209 -----y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e 283 (399)
T KOG0296|consen 209 -----YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQE 283 (399)
T ss_pred -----ecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccch
Confidence 99999999999999999888632 3355677776 7788888888887777633322 12
Q ss_pred ceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCCeEEeeCCCCcEEEEEccccceec
Q 041206 290 AELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAGLFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 290 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
....++..+.+...-++.++|+-||+|.|||+...++.....|..+|..+.|-++.+|++++.||.|+.||.++++++.
T Consensus 284 ~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~ 362 (399)
T KOG0296|consen 284 ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKF 362 (399)
T ss_pred hhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEE
Confidence 2223455455555556899999999999999999999988889999999999994499999999999999999998764
No 45
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4e-30 Score=200.96 Aligned_cols=239 Identities=21% Similarity=0.322 Sum_probs=198.6
Q ss_pred ceeeEeeeCccCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCc---eEEEEeCCCeeEEEeecCCEEEEecCCcEEEE
Q 041206 86 LATLMKLNGHKKAVTNVGLPSG-SNKLYSGSRDGRVSVWDRDSGR---CVNVITNGAEIGCLISEGSWVFLGLPNAVKSW 161 (371)
Q Consensus 86 ~~~~~~l~~h~~~V~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 161 (371)
...++.+++|.+.|..++|+|- |..||||+.|+.|++|+...+. +...+.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld-------------------------- 57 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLD-------------------------- 57 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEecc--------------------------
Confidence 3567899999999999999997 8899999999999999987532 332222
Q ss_pred EeCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCe
Q 041206 162 RVNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHT 237 (371)
Q Consensus 162 ~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~ 237 (371)
+.|+..|.+++|+|. +|++|+.|.++.||.-..+ .++++..+.+|. .|.|++|+++|. |+++ +.|..
T Consensus 58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~--efecv~~lEGHEnEVK~Vaws~sG~~LATC-------SRDKS 128 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG--EFECVATLEGHENEVKCVAWSASGNYLATC-------SRDKS 128 (312)
T ss_pred ccchheeeeeeecCCCcEEEEeeccceEEEeecCCC--ceeEEeeeeccccceeEEEEcCCCCEEEEe-------eCCCe
Confidence 126667999999988 9999999999999987654 358899999999 999999999996 8999 99999
Q ss_pred EEEEECCC---ceEEEEeecCCCcEEEEEEcC--CeEEEEeCCCcEEEEEccCCC-------CcceecceEEEEecCCCC
Q 041206 238 TRTWNLDN---LECVQTLKGHSDTVTSLLFWD--EYLFSSSLDETIKIWLYTHTK-------NNAELSSLFGMLDAEAKP 305 (371)
Q Consensus 238 i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~ 305 (371)
|-||.+.. .+++..+++|...|..+.|+| .+|+++|.|.+|++|+-.... ..++-..+..+.+.+.+.
T Consensus 129 VWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~ 208 (312)
T KOG0645|consen 129 VWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS 208 (312)
T ss_pred EEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc
Confidence 99999974 467889999999999999996 899999999999999865322 123333566666777667
Q ss_pred EEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCCeEEeeCCCCcEEEEEccc
Q 041206 306 VLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAGLFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 306 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~~ 363 (371)
.|++++.|++|+||..... ....+..+++.+.|. ++.|++++.|+.|++|.-..
T Consensus 209 rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 209 RLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESD 262 (312)
T ss_pred eEEEecCCcceEeeeeccC---cchhcccceEeeeec-ccceEeccCCCEEEEEEecC
Confidence 9999999999999986621 122357889999998 67999999999999998764
No 46
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-31 Score=229.06 Aligned_cols=242 Identities=19% Similarity=0.292 Sum_probs=209.4
Q ss_pred eeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCC
Q 041206 88 TLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAAS 167 (371)
Q Consensus 88 ~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 167 (371)
.-+++..|+..|-++.|+|....++++-.+|.|.|||.++...++.+... .-+
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~---------------------------~~P 57 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVS---------------------------EVP 57 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeec---------------------------ccc
Confidence 34566679999999999999999999999999999999999988887743 335
Q ss_pred eeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEEC
Q 041206 168 VNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNL 243 (371)
Q Consensus 168 v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~ 243 (371)
|.+..|-+. ++++|+.|..|+||+.++. +.+..+..|. .|++++.+|... ++++ +.|-.|++||-
T Consensus 58 vRa~kfiaRknWiv~GsDD~~IrVfnynt~----ekV~~FeAH~DyIR~iavHPt~P~vLts-------SDDm~iKlW~w 126 (794)
T KOG0276|consen 58 VRAAKFIARKNWIVTGSDDMQIRVFNYNTG----EKVKTFEAHSDYIRSIAVHPTLPYVLTS-------SDDMTIKLWDW 126 (794)
T ss_pred hhhheeeeccceEEEecCCceEEEEecccc----eeeEEeeccccceeeeeecCCCCeEEec-------CCccEEEEeec
Confidence 777777765 9999999999999999999 8999999999 999999999774 8899 99999999999
Q ss_pred CC-ceEEEEeecCCCcEEEEEEc---CCeEEEEeCCCcEEEEEccCCCCc----ceecceEEEE--ecCCCCEEEEecCC
Q 041206 244 DN-LECVQTLKGHSDTVTSLLFW---DEYLFSSSLDETIKIWLYTHTKNN----AELSSLFGML--DAEAKPVLFSSGKD 313 (371)
Q Consensus 244 ~~-~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~--~~~~~~~l~~~~~d 313 (371)
+. ..+.++|.+|...|.+++|+ ++.++++|-|++|++|.+..+.+. ++...+.++- ..++.++|++|+.|
T Consensus 127 e~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD 206 (794)
T KOG0276|consen 127 ENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD 206 (794)
T ss_pred cCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCC
Confidence 75 46789999999999999999 579999999999999998876652 2223333332 23445699999999
Q ss_pred CeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccccee
Q 041206 314 SAIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 314 ~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~ 367 (371)
.+|+|||..+..++.++. |...|..+.|+|.- .+++|+.||+++||+-.+-++.
T Consensus 207 ~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE 262 (794)
T KOG0276|consen 207 LTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLE 262 (794)
T ss_pred ceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehh
Confidence 999999999999999998 78899999999998 9999999999999998765543
No 47
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.9e-30 Score=233.28 Aligned_cols=241 Identities=24% Similarity=0.392 Sum_probs=203.5
Q ss_pred eeEeeeCc-cCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeC
Q 041206 88 TLMKLNGH-KKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGR--CVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVN 164 (371)
Q Consensus 88 ~~~~l~~h-~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 164 (371)
....+.+| ...|.++.|+++|+.+++++.|+.+++|+..+++ .+..+.. |
T Consensus 150 ~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~---------------------------h 202 (456)
T KOG0266|consen 150 LEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSG---------------------------H 202 (456)
T ss_pred eeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccc---------------------------c
Confidence 35566555 7899999999999999999999999999997776 4444422 4
Q ss_pred CCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEE
Q 041206 165 AASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRT 240 (371)
Q Consensus 165 ~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~i 240 (371)
...|.+++|+|+ ++++++.|++|++||+.... ..++++++|. .|++++|+|+++ +++| +.|++|++
T Consensus 203 ~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~---~~~~~l~gH~~~v~~~~f~p~g~~i~Sg-------s~D~tvri 272 (456)
T KOG0266|consen 203 TRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG---RNLKTLKGHSTYVTSVAFSPDGNLLVSG-------SDDGTVRI 272 (456)
T ss_pred ccceeeeEECCCCcEEEEecCCceEEEeeccCCC---eEEEEecCCCCceEEEEecCCCCEEEEe-------cCCCcEEE
Confidence 456999999998 99999999999999993331 7889999999 999999999995 8999 99999999
Q ss_pred EECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC------cceec--ceEEEEecCCCCEEEEe
Q 041206 241 WNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN------NAELS--SLFGMLDAEAKPVLFSS 310 (371)
Q Consensus 241 wd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~------~~~~~--~~~~~~~~~~~~~l~~~ 310 (371)
||+++++++..+.+|.+.|++++|+ +++|++++.|+.|++||+..... ..... .+..+.+.+++.+++++
T Consensus 273 Wd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~ 352 (456)
T KOG0266|consen 273 WDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSA 352 (456)
T ss_pred EeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEe
Confidence 9999999999999999999999999 78999999999999999887771 11111 46667777777899999
Q ss_pred cCCCeEEEEEcCCcceeeeecC-Cc---eEEEEEeCCCC-eEEeeCCCCcEEEEEccccc
Q 041206 311 GKDSAIRLYELPSFKLRARIFS-RR---EVEVDQIGPAG-LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 311 ~~d~~i~iwd~~~~~~~~~~~~-~~---~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~ 365 (371)
+.|+.+++||+..+..+..+.. .. .+.+...++.+ .+++|+.|+.|++|++.++.
T Consensus 353 ~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 353 SLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred cCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc
Confidence 9999999999999888877763 22 34455567778 99999999999999998754
No 48
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.4e-31 Score=209.14 Aligned_cols=243 Identities=18% Similarity=0.288 Sum_probs=203.6
Q ss_pred ceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeC
Q 041206 86 LATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSG-RCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVN 164 (371)
Q Consensus 86 ~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 164 (371)
..++..+.||++.|+.+.|+|+|.+||||+.|..|.+|++... +...+++ .|
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk---------------------------gH 89 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLK---------------------------GH 89 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeec---------------------------cc
Confidence 4567889999999999999999999999999999999996422 2222222 37
Q ss_pred CCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce--eEecccceeeeeCCCeEE
Q 041206 165 AASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR--WNSKEEAAVFEFCGHTTR 239 (371)
Q Consensus 165 ~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~ 239 (371)
.+.|..+.|..+ .+++++.|.+|+.||++++ +....+++|. -|+++..+.-|. +.++ +.|++++
T Consensus 90 sgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG----~~~rk~k~h~~~vNs~~p~rrg~~lv~Sg-------sdD~t~k 158 (338)
T KOG0265|consen 90 SGAVMELHGMRDGSHILSCGTDKTVRGWDAETG----KRIRKHKGHTSFVNSLDPSRRGPQLVCSG-------SDDGTLK 158 (338)
T ss_pred cceeEeeeeccCCCEEEEecCCceEEEEecccc----eeeehhccccceeeecCccccCCeEEEec-------CCCceEE
Confidence 778999999988 9999999999999999999 8999999999 888888666563 6778 9999999
Q ss_pred EEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC----cceecceEEEEecCCCCEEEEecCC
Q 041206 240 TWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN----NAELSSLFGMLDAEAKPVLFSSGKD 313 (371)
Q Consensus 240 iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~d 313 (371)
+||+++..++++++ ...+++++.|. +..+.+|+-|+.|++||++.... .++...+..++..+.+.++.+-+.|
T Consensus 159 l~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd 237 (338)
T KOG0265|consen 159 LWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMD 237 (338)
T ss_pred EEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccccc
Confidence 99999999988876 46789999998 78999999999999999987664 4555677788888888899999999
Q ss_pred CeEEEEEcCCcce----eeeecC-----CceEEEEEeCCCC-eEEeeCCCCcEEEEEcccccee
Q 041206 314 SAIRLYELPSFKL----RARIFS-----RREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 314 ~~i~iwd~~~~~~----~~~~~~-----~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~ 367 (371)
.++++||++...+ +..+.+ .......+|+|++ .+.+|+.|..+++||.......
T Consensus 238 ~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~l 301 (338)
T KOG0265|consen 238 NTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRIL 301 (338)
T ss_pred ceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEE
Confidence 9999999987543 333332 3456678899999 9999999999999998875543
No 49
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3e-32 Score=228.60 Aligned_cols=245 Identities=18% Similarity=0.264 Sum_probs=207.8
Q ss_pred CceeeEeeeCccCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEE
Q 041206 85 SLATLMKLNGHKKAVTNVGLPS-GSNKLYSGSRDGRVSVWDRDS-GRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWR 162 (371)
Q Consensus 85 ~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 162 (371)
..+.++++.||+..|+++.|.| .+.+|++++.|+.|+||++.. +.+++++..
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g-------------------------- 256 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG-------------------------- 256 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc--------------------------
Confidence 3467899999999999999999 899999999999999999887 788888876
Q ss_pred eCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCc-e-eEecccceeeeeCCCeE
Q 041206 163 VNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDT-R-WNSKEEAAVFEFCGHTT 238 (371)
Q Consensus 163 ~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~-l~~~~~~~~~~~~dg~i 238 (371)
|..+|.+++|++. .+++++.|+.+++||.+++ ++...+.....++|+.|.|++ . +++| +.|+.|
T Consensus 257 -H~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG----~~~~~f~~~~~~~cvkf~pd~~n~fl~G-------~sd~ki 324 (503)
T KOG0282|consen 257 -HRKPVRDASFNNCGTSFLSASFDRFLKLWDTETG----QVLSRFHLDKVPTCVKFHPDNQNIFLVG-------GSDKKI 324 (503)
T ss_pred -chhhhhhhhccccCCeeeeeecceeeeeeccccc----eEEEEEecCCCceeeecCCCCCcEEEEe-------cCCCcE
Confidence 5557999999988 9999999999999999999 888888877799999999998 3 8899 999999
Q ss_pred EEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcce-----ecceEEEEecCCCCEEEEec
Q 041206 239 RTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAE-----LSSLFGMLDAEAKPVLFSSG 311 (371)
Q Consensus 239 ~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~ 311 (371)
+.||+++++.++.+..|-+.|..+.|- +.++++.+.|++++||+.+.+-.... .....++...+.+.++++-+
T Consensus 325 ~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs 404 (503)
T KOG0282|consen 325 RQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS 404 (503)
T ss_pred EEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc
Confidence 999999999999999999999999998 78999999999999999776654221 12333445566666999999
Q ss_pred CCCeEEEEEcCCcceee---eec---CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccccee
Q 041206 312 KDSAIRLYELPSFKLRA---RIF---SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 312 ~d~~i~iwd~~~~~~~~---~~~---~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~ 367 (371)
.|+.|.+|.+...-... .+. ..+.-..+.||||| +|++|+.||.+.+||+++.++.
T Consensus 405 ~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~ 467 (503)
T KOG0282|consen 405 MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLV 467 (503)
T ss_pred cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhh
Confidence 99999999875432221 222 14566789999999 9999999999999999886543
No 50
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.3e-30 Score=211.14 Aligned_cols=276 Identities=17% Similarity=0.200 Sum_probs=217.4
Q ss_pred eccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcC---CCCEEEEEeCC
Q 041206 41 FGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPS---GSNKLYSGSRD 117 (371)
Q Consensus 41 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~---~~~~l~s~~~d 117 (371)
|.+.|.++... . ....++..++.+++|+ ..++..+++.||.++|.+++|.. ....|++++.|
T Consensus 104 hdDWVSsv~~~-~-----~~IltgsYDg~~riWd---------~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~D 168 (423)
T KOG0313|consen 104 HDDWVSSVKGA-S-----KWILTGSYDGTSRIWD---------LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMD 168 (423)
T ss_pred chhhhhhhccc-C-----ceEEEeecCCeeEEEe---------cCCceEEEEecCCcceeeeEEEecCCccceEEEecCC
Confidence 55555555444 1 2234578899999999 67899999999999999888854 22369999999
Q ss_pred CcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCC
Q 041206 118 GRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVWKGTFV 195 (371)
Q Consensus 118 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~ 195 (371)
.++++|.++.++........ -.-|...|-+++..++ .+++|+.|..|+||+....
T Consensus 169 qtl~Lw~~~~~~~~~~~~~~-----------------------~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~ 225 (423)
T KOG0313|consen 169 QTLRLWKWNVGENKVKALKV-----------------------CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETD 225 (423)
T ss_pred ceEEEEEecCchhhhhHHhH-----------------------hcccccceeEEEecCCCCeEEeecccceeeecccCCC
Confidence 99999999877643322110 0025567889988777 9999999999999993221
Q ss_pred C---------------------CcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEee
Q 041206 196 A---------------------NPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLK 253 (371)
Q Consensus 196 ~---------------------~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~ 253 (371)
. ....++..+.+|. +|.++.|++.+.++++ +.|.+|+.||+.++..+.++.
T Consensus 226 ~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~-------SwDHTIk~WDletg~~~~~~~ 298 (423)
T KOG0313|consen 226 EEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSV-------SWDHTIKVWDLETGGLKSTLT 298 (423)
T ss_pred ccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEee-------cccceEEEEEeecccceeeee
Confidence 1 1135778899999 9999999997779999 999999999999999988887
Q ss_pred cCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcc-------eecceEEE-EecCCCCEEEEecCCCeEEEEEcCC
Q 041206 254 GHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNA-------ELSSLFGM-LDAEAKPVLFSSGKDSAIRLYELPS 323 (371)
Q Consensus 254 ~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~-------~~~~~~~~-~~~~~~~~l~~~~~d~~i~iwd~~~ 323 (371)
+ ...++++.+. .++|++|+.|..|++||.+.+.... +.+.+..+ +.|.+..+|++++.|+++++||+++
T Consensus 299 ~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS 377 (423)
T KOG0313|consen 299 T-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS 377 (423)
T ss_pred c-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence 4 5678999998 5799999999999999988876321 11222222 5566667899999999999999999
Q ss_pred cc-eeeeec-CCceEEEEEeCCCCeEEeeCCCCcEEEEEcc
Q 041206 324 FK-LRARIF-SRREVEVDQIGPAGLFFPGDASGSVGVWKWL 362 (371)
Q Consensus 324 ~~-~~~~~~-~~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~ 362 (371)
.+ ++..+. |...|.++.|+..+.+++|+.|.+|+|+.-.
T Consensus 378 ~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 378 TKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CCCcceeeccCCceEEEEeccCCceEEeccCcceEEEeccc
Confidence 87 787776 6889999999876699999999999998754
No 51
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=2.2e-29 Score=221.79 Aligned_cols=333 Identities=21% Similarity=0.303 Sum_probs=242.4
Q ss_pred CCCceeec-cCcc-----cccceeEEEEE--eeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCcee
Q 041206 17 EGGETMMS-DDDD-----LMKGRAEEREE--MFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLAT 88 (371)
Q Consensus 17 p~g~~l~~-~~~d-----~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 88 (371)
..|+++|+ +.++ +..|.....+. .....++++..++....++ .|-.++.|++|+ ..+...
T Consensus 32 ~~Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lA----VGYaDGsVqif~--------~~s~~~ 99 (888)
T KOG0306|consen 32 GKGRAVAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLA----VGYADGSVQIFS--------LESEEI 99 (888)
T ss_pred CCCcEEEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEE----EEecCceEEeec--------cCCCce
Confidence 34777776 4333 55553333321 2234677777777655433 478899999999 233478
Q ss_pred eEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-CeeEEEee--cCCEEEE-ecCCcEEEEEeC
Q 041206 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNG-AEIGCLIS--EGSWVFL-GLPNAVKSWRVN 164 (371)
Q Consensus 89 ~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~-~~~~~i~~~~~~ 164 (371)
..++.||..+|+++.|...|.+|+|||.|+.|.+||+-...-...+..+ +.++.+.| +.+++++ +.|+.|++||+.
T Consensus 100 ~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~ 179 (888)
T KOG0306|consen 100 LITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLE 179 (888)
T ss_pred eeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecc
Confidence 8999999999999999999999999999999999999877777777764 44555544 2455544 779999999997
Q ss_pred CC-----------CeeEEEEeCCEEEEEeCCCeEEEEeccCCCCc---------------------------------c-
Q 041206 165 AA-----------SVNALVVNNDLLFAGSEGGVISVWKGTFVANP---------------------------------F- 199 (371)
Q Consensus 165 ~~-----------~v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~---------------------------------~- 199 (371)
+. .+.++++.++.+++++.|+.+++|++...... +
T Consensus 180 tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~ 259 (888)
T KOG0306|consen 180 TQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFL 259 (888)
T ss_pred cceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEE
Confidence 66 88999999999999999999999998211000 0
Q ss_pred ---------------------------------------------------------------------------e----
Q 041206 200 ---------------------------------------------------------------------------K---- 200 (371)
Q Consensus 200 ---------------------------------------------------------------------------~---- 200 (371)
.
T Consensus 260 ~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv 339 (888)
T KOG0306|consen 260 VCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLV 339 (888)
T ss_pred EEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEE
Confidence 0
Q ss_pred -------------------------eeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCce-------
Q 041206 201 -------------------------QVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLE------- 247 (371)
Q Consensus 201 -------------------------~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~------- 247 (371)
.-..+.+|. .|.+++++.+..++.. +..+.+++|+..+.+
T Consensus 340 ~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~S-------ga~~SikiWn~~t~kciRTi~~ 412 (888)
T KOG0306|consen 340 LLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLAS-------GAGESIKIWNRDTLKCIRTITC 412 (888)
T ss_pred EeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeee-------cCCCcEEEEEccCcceeEEecc
Confidence 001233455 6777777776653322 345556666655443
Q ss_pred ---------------------------------EEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC----
Q 041206 248 ---------------------------------CVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN---- 288 (371)
Q Consensus 248 ---------------------------------~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~---- 288 (371)
.+.++++|.+.|.+++.. +..++++|.|.+|++||+.....
T Consensus 413 ~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt 492 (888)
T KOG0306|consen 413 GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGT 492 (888)
T ss_pred ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcc
Confidence 344445689999999988 67999999999999999543221
Q ss_pred ---------cc---eecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCC
Q 041206 289 ---------NA---ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASG 354 (371)
Q Consensus 289 ---------~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg 354 (371)
.. ....+.++..+|++.+|+++--|++|+||-+.+.+....+. |.-||.++.+|||+ .++|||.|.
T Consensus 493 ~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADK 572 (888)
T KOG0306|consen 493 QKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADK 572 (888)
T ss_pred cceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCC
Confidence 01 11234445556666699999999999999999998877777 67799999999999 999999999
Q ss_pred cEEEEEccccceec
Q 041206 355 SVGVWKWLLAEQQK 368 (371)
Q Consensus 355 ~i~iw~~~~~~~~~ 368 (371)
+|+||-+.-+.+.+
T Consensus 573 nVKiWGLdFGDCHK 586 (888)
T KOG0306|consen 573 NVKIWGLDFGDCHK 586 (888)
T ss_pred ceEEeccccchhhh
Confidence 99999887665543
No 52
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=4.3e-29 Score=213.87 Aligned_cols=240 Identities=28% Similarity=0.451 Sum_probs=200.3
Q ss_pred eEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCe
Q 041206 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASV 168 (371)
Q Consensus 89 ~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v 168 (371)
++++++|.++|++++|+|++++|++++.||.|++|++.+++....+.. +...+
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~---------------------------~~~~i 54 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG---------------------------HTGPV 54 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEec---------------------------CCcce
Confidence 457889999999999999999999999999999999998876555543 33357
Q ss_pred eEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECC
Q 041206 169 NALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLD 244 (371)
Q Consensus 169 ~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~ 244 (371)
..+.+.++ .+++++.+|.|++||+... +....+..|. .+.++.|++++. ++++ +.++.+++||++
T Consensus 55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~~~~i~~~~~~ 123 (289)
T cd00200 55 RDVAASADGTYLASGSSDKTIRLWDLETG----ECVRTLTGHTSYVSSVAFSPDGRILSSS-------SRDKTIKVWDVE 123 (289)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEcCcc----cceEEEeccCCcEEEEEEcCCCCEEEEe-------cCCCeEEEEECC
Confidence 78888887 8999999999999999987 6677788888 999999999876 5555 569999999999
Q ss_pred CceEEEEeecCCCcEEEEEEcC--CeEEEEeCCCcEEEEEccCCCCccee----cceEEEEecCCCCEEEEecCCCeEEE
Q 041206 245 NLECVQTLKGHSDTVTSLLFWD--EYLFSSSLDETIKIWLYTHTKNNAEL----SSLFGMLDAEAKPVLFSSGKDSAIRL 318 (371)
Q Consensus 245 ~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~d~~i~i 318 (371)
+++....+..|...+.++.|++ .++++++.|+.+++||++..+..... ..+..+.+.+++..+++++.++.|++
T Consensus 124 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 203 (289)
T cd00200 124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203 (289)
T ss_pred CcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEE
Confidence 9999999999999999999994 67777777999999998765532221 24455556666668888888999999
Q ss_pred EEcCCcceeeee-cCCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccce
Q 041206 319 YELPSFKLRARI-FSRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 319 wd~~~~~~~~~~-~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~ 366 (371)
||++.++.+..+ .+...+.++.|+|++ ++++++.||.|++|++..++.
T Consensus 204 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~ 253 (289)
T cd00200 204 WDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC 253 (289)
T ss_pred EECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee
Confidence 999998888887 467799999999999 888888899999999986544
No 53
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.3e-30 Score=204.76 Aligned_cols=312 Identities=19% Similarity=0.182 Sum_probs=237.6
Q ss_pred cceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCE
Q 041206 31 KGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNK 110 (371)
Q Consensus 31 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 110 (371)
.-++.+.+.||.++|..++....+. .|...+.|...++|. .+.+.++.++.||.+.|++++|++.+.+
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqp----i~gtASADhTA~iWs--------~Esg~CL~~Y~GH~GSVNsikfh~s~~L 204 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQP----ICGTASADHTARIWS--------LESGACLATYTGHTGSVNSIKFHNSGLL 204 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCc----ceeecccccceeEEe--------eccccceeeecccccceeeEEeccccce
Confidence 5677888999999999998766333 566678899999999 5678999999999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceE------EEEeCCCeeEEEeecCCEEEE--ecC-CcEE----EEEeCCCCeeEEEEeCC-
Q 041206 111 LYSGSRDGRVSVWDRDSGRCV------NVITNGAEIGCLISEGSWVFL--GLP-NAVK----SWRVNAASVNALVVNND- 176 (371)
Q Consensus 111 l~s~~~dg~v~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~-~~i~----~~~~~~~~v~~~~~~~~- 176 (371)
+++++.|++-.||...-.-.+ .....+....+-.-++...-. ..| .+|+ -+.-|.+.|.+..|-..
T Consensus 205 ~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg 284 (481)
T KOG0300|consen 205 LLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG 284 (481)
T ss_pred EEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc
Confidence 999999999999973211111 111111111111100111100 111 1222 23446667777777544
Q ss_pred -EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCc-eEEEEe
Q 041206 177 -LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNL-ECVQTL 252 (371)
Q Consensus 177 -~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~ 252 (371)
.+++++.|.+-.+||++++ +.+..+.+|. ..+.++-+|..+ +++. +.|-+.++||++.. ..+..|
T Consensus 285 ~Q~vTaSWDRTAnlwDVEtg----e~v~~LtGHd~ELtHcstHptQrLVvTs-------SrDtTFRLWDFReaI~sV~VF 353 (481)
T KOG0300|consen 285 QQMVTASWDRTANLWDVETG----EVVNILTGHDSELTHCSTHPTQRLVVTS-------SRDTTFRLWDFREAIQSVAVF 353 (481)
T ss_pred ceeeeeeccccceeeeeccC----ceeccccCcchhccccccCCcceEEEEe-------ccCceeEeccchhhcceeeee
Confidence 9999999999999999999 9999999999 999999999887 6788 99999999999843 456789
Q ss_pred ecCCCcEEEEEEc-CCeEEEEeCCCcEEEEEccCCCCcce----ecceEEEEecCCCCEEEEecCCCeEEEEEcCCccee
Q 041206 253 KGHSDTVTSLLFW-DEYLFSSSLDETIKIWLYTHTKNNAE----LSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLR 327 (371)
Q Consensus 253 ~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 327 (371)
++|...|+++.|. +..+++|+.|.+|++||+++.+..-. -+.+..+....+.++++.--.+..|++||++..++.
T Consensus 354 QGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rla 433 (481)
T KOG0300|consen 354 QGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLA 433 (481)
T ss_pred cccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccc
Confidence 9999999999999 89999999999999999988764211 123344455666668888888899999999876543
Q ss_pred eee-----cCCceEEEEEeCCCC---eEEeeCCCCcEEEEEccccc
Q 041206 328 ARI-----FSRREVEVDQIGPAG---LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 328 ~~~-----~~~~~v~~~~~s~~~---~l~~~~~dg~i~iw~~~~~~ 365 (371)
.-. .|..-|.|++|..+. -|++++.|..+.=|++..+.
T Consensus 434 RlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 434 RLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred cCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 322 256789999999876 89999999999999998654
No 54
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.4e-29 Score=218.95 Aligned_cols=255 Identities=21% Similarity=0.293 Sum_probs=213.6
Q ss_pred CccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEe
Q 041206 65 DKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLI 144 (371)
Q Consensus 65 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 144 (371)
+....+.+|+ ...++......-++..|+++.|+++|.+||.|..+|.|.|||..+.+.+..+..+
T Consensus 194 alg~~vylW~--------~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~------- 258 (484)
T KOG0305|consen 194 ALGQSVYLWS--------ASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS------- 258 (484)
T ss_pred EecceEEEEe--------cCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC-------
Confidence 3445788888 3444444445555899999999999999999999999999999988888777652
Q ss_pred ecCCEEEEecCCcEEEEEeCCCCeeEEEEeCCEEEEEeCCCeEEEEeccCCCCcceeeE-EEecCc-ceEEEEecCCce-
Q 041206 145 SEGSWVFLGLPNAVKSWRVNAASVNALVVNNDLLFAGSEGGVISVWKGTFVANPFKQVA-SIRAPL-WFCSLSSSNDTR- 221 (371)
Q Consensus 145 ~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~-~v~~~~~~~~~~- 221 (371)
|...|-+++|+...+.+|+.++.|..+|++... ... .+.+|. .|..++|++|+.
T Consensus 259 -------------------h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~----~~~~~~~~H~qeVCgLkws~d~~~ 315 (484)
T KOG0305|consen 259 -------------------HASRVGSLAWNSSVLSSGSRDGKILNHDVRISQ----HVVSTLQGHRQEVCGLKWSPDGNQ 315 (484)
T ss_pred -------------------cCceeEEEeccCceEEEecCCCcEEEEEEecch----hhhhhhhcccceeeeeEECCCCCe
Confidence 344699999998899999999999999999883 333 488899 999999999996
Q ss_pred eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc---CCeEEEEe--CCCcEEEEEccCCCCccee---c
Q 041206 222 WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW---DEYLFSSS--LDETIKIWLYTHTKNNAEL---S 293 (371)
Q Consensus 222 l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~--~dg~i~iwd~~~~~~~~~~---~ 293 (371)
+++| +.|+.+.|||....+++..+..|.+.|.+++|+ .+.||+|+ .|++|++||..+......+ .
T Consensus 316 lASG-------gnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs 388 (484)
T KOG0305|consen 316 LASG-------GNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS 388 (484)
T ss_pred eccC-------CCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCC
Confidence 9999 999999999998889999999999999999999 67999865 7999999998877653322 4
Q ss_pred ceEEEEecCCCCEEEE--ecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccc
Q 041206 294 SLFGMLDAEAKPVLFS--SGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 294 ~~~~~~~~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
.++.+.+.+..+-|++ |..++.|.||+..+.+++..+. |...|..++++||| .+++|+.|.++++|++-..
T Consensus 389 QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 389 QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 5666666665544444 3456789999999998888887 78899999999999 9999999999999999764
No 55
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=6e-30 Score=199.59 Aligned_cols=281 Identities=16% Similarity=0.159 Sum_probs=212.0
Q ss_pred EEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeC
Q 041206 37 REEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSR 116 (371)
Q Consensus 37 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~ 116 (371)
.++||...++.+.++..+.++. +.+.|....+|- ..+++.+.+++||++.|.|+..+-+.++|+||+.
T Consensus 5 ~l~GHERplTqiKyN~eGDLlF----scaKD~~~~vw~--------s~nGerlGty~GHtGavW~~Did~~s~~liTGSA 72 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLF----SCAKDSTPTVWY--------SLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSA 72 (327)
T ss_pred ccccCccccceEEecCCCcEEE----EecCCCCceEEE--------ecCCceeeeecCCCceEEEEEecCCcceeeeccc
Confidence 3578999999999888666443 346777888888 4578999999999999999999999999999999
Q ss_pred CCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEe-----CCCeEEE
Q 041206 117 DGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGS-----EGGVISV 189 (371)
Q Consensus 117 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~-----~dg~v~i 189 (371)
|.++++||+++|+++.+++.+.+ |..+.|+.. +++..+ ..+.|.+
T Consensus 73 D~t~kLWDv~tGk~la~~k~~~~----------------------------Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~ 124 (327)
T KOG0643|consen 73 DQTAKLWDVETGKQLATWKTNSP----------------------------VKRVDFSFGGNLILASTDKQMGYTCFVSV 124 (327)
T ss_pred cceeEEEEcCCCcEEEEeecCCe----------------------------eEEEeeccCCcEEEEEehhhcCcceEEEE
Confidence 99999999999999999987766 566666655 333322 3467889
Q ss_pred EeccCCCC---cceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCc-eEEEEeecCCCcEEEEE
Q 041206 190 WKGTFVAN---PFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNL-ECVQTLKGHSDTVTSLL 263 (371)
Q Consensus 190 wd~~~~~~---~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~ 263 (371)
+|++.... ..++...+..+. .++..-|.|-++ +++| ..||.|.+||++++ +.+..-+.|...|+.++
T Consensus 125 fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~G-------he~G~is~~da~~g~~~v~s~~~h~~~Ind~q 197 (327)
T KOG0643|consen 125 FDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAG-------HEDGSISIYDARTGKELVDSDEEHSSKINDLQ 197 (327)
T ss_pred EEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEe-------cCCCcEEEEEcccCceeeechhhhcccccccc
Confidence 99885431 125677777777 999999999886 8999 99999999999997 45566678999999999
Q ss_pred Ec--CCeEEEEeCCCcEEEEEccCCCCccee---cceEEE-EecCCCCEEEEecCCC-eE------------EEEEcCCc
Q 041206 264 FW--DEYLFSSSLDETIKIWLYTHTKNNAEL---SSLFGM-LDAEAKPVLFSSGKDS-AI------------RLYELPSF 324 (371)
Q Consensus 264 ~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~-~~~~~~~~l~~~~~d~-~i------------~iwd~~~~ 324 (371)
++ ..+++++|.|.+-++||.+..+..... ..+... .+|.....++.|+.+. .| ++|++-..
T Consensus 198 ~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~e 277 (327)
T KOG0643|consen 198 FSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFE 277 (327)
T ss_pred ccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHH
Confidence 99 579999999999999997765542211 122322 3343443344444331 12 22222223
Q ss_pred ceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccc
Q 041206 325 KLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 325 ~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
+.+..+. |-++|++++|+|+| ..++|+.||.|++......
T Consensus 278 EEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 278 EEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred HHhccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 4444444 46899999999999 9999999999999876543
No 56
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.9e-28 Score=221.87 Aligned_cols=244 Identities=16% Similarity=0.183 Sum_probs=185.5
Q ss_pred eCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCce-EEEEeCCCee
Q 041206 63 YGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSG-SNKLYSGSRDGRVSVWDRDSGRC-VNVITNGAEI 140 (371)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~ 140 (371)
.|+..+.+++|+ .. ....+..+.+|.+.|.+++|+|+ +++|+||+.||+|+|||+.++.. ...+.
T Consensus 49 gGG~~gvI~L~~-------~~-r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~----- 115 (568)
T PTZ00420 49 GGGLIGAIRLEN-------QM-RKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK----- 115 (568)
T ss_pred CCCceeEEEeee-------cC-CCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc-----
Confidence 367788899998 22 34678899999999999999996 78999999999999999986532 11110
Q ss_pred EEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEec
Q 041206 141 GCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSS 217 (371)
Q Consensus 141 ~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 217 (371)
..+..+..|...|.+++|+|+ .+++++.|+.|++||++++ +....+..+..|.+++|+
T Consensus 116 ---------------~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg----~~~~~i~~~~~V~Slsws 176 (568)
T PTZ00420 116 ---------------DPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE----KRAFQINMPKKLSSLKWN 176 (568)
T ss_pred ---------------cceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC----cEEEEEecCCcEEEEEEC
Confidence 112223446778999999997 5678999999999999988 555555533389999999
Q ss_pred CCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEE-----Ec--CCeEEEEeCCC----cEEEEEccC
Q 041206 218 NDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLL-----FW--DEYLFSSSLDE----TIKIWLYTH 285 (371)
Q Consensus 218 ~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~-----~~--~~~l~s~~~dg----~i~iwd~~~ 285 (371)
|+|. ++++ +.|+.|++||+++++.+..+.+|.+.+.+.. |+ +++|++++.|+ +|+|||++.
T Consensus 177 pdG~lLat~-------s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 177 IKGNLLSGT-------CVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred CCCCEEEEE-------ecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 9997 6777 8899999999999999999999988654433 22 56888888774 799999986
Q ss_pred CCC-c------ceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcc--eeeeecCCceEEEEEeCCCC
Q 041206 286 TKN-N------AELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFK--LRARIFSRREVEVDQIGPAG 345 (371)
Q Consensus 286 ~~~-~------~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~v~~~~~s~~~ 345 (371)
... . .....+...+.++.+.++++|+.|+.|++|++..+. .+..+.+..++.+++|.|..
T Consensus 250 ~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 250 TTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence 432 1 111233445566777789999999999999997764 23333457788999999974
No 57
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=5.2e-30 Score=209.08 Aligned_cols=277 Identities=19% Similarity=0.276 Sum_probs=213.0
Q ss_pred eecceeeccceeeCCccceEEEEEeccC------CCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 041206 51 RVCNNWISDSCVYGDKCRFLHSWVHSVD------GDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWD 124 (371)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd 124 (371)
.|+.|++.+......-+.++.....+.+ |-.....++++..+. |.+.|.++... ++.++||++||.+++||
T Consensus 55 ~pFDFLi~gelLRtsL~e~l~~kgiSsE~~leIEYv~~~~aP~pl~~~~-hdDWVSsv~~~--~~~IltgsYDg~~riWd 131 (423)
T KOG0313|consen 55 VPFDFLIKGELLRTSLDEHLEEKGISSEEILEIEYVEAITAPKPLQCFL-HDDWVSSVKGA--SKWILTGSYDGTSRIWD 131 (423)
T ss_pred CcceEEEcceeeeccHHHHHHHcCcChhheeEEEEEEecCCCCcccccc-chhhhhhhccc--CceEEEeecCCeeEEEe
Confidence 4566677777766665555443332222 111122334444444 89999999988 78999999999999999
Q ss_pred CCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEe-CC----EEEEEeCCCeEEEEeccCCCCcc
Q 041206 125 RDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVN-ND----LLFAGSEGGVISVWKGTFVANPF 199 (371)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~-~~----~l~~~~~dg~v~iwd~~~~~~~~ 199 (371)
.. |+....+.. |++++.++++. ++ .+++++.|.++++|..+.+....
T Consensus 132 ~~-Gk~~~~~~G---------------------------ht~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~ 183 (423)
T KOG0313|consen 132 LK-GKSIKTIVG---------------------------HTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV 183 (423)
T ss_pred cC-CceEEEEec---------------------------CCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh
Confidence 64 777776665 45567766653 22 79999999999999998886655
Q ss_pred eeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECC-------------------------CceEEEEe
Q 041206 200 KQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLD-------------------------NLECVQTL 252 (371)
Q Consensus 200 ~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~-------------------------~~~~~~~~ 252 (371)
+.+..-++|. .|.++...+++. +++| +.|.+|.+|+.. ++.++-++
T Consensus 184 ~~~~~~~GHk~~V~sVsv~~sgtr~~Sg-------S~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl 256 (423)
T KOG0313|consen 184 KALKVCRGHKRSVDSVSVDSSGTRFCSG-------SWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL 256 (423)
T ss_pred hHHhHhcccccceeEEEecCCCCeEEee-------cccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence 5666667999 999999999985 9999 999999999932 13467788
Q ss_pred ecCCCcEEEEEEc-CCeEEEEeCCCcEEEEEccCCCCccee---cceEEEEecCCCCEEEEecCCCeEEEEEcCCcc---
Q 041206 253 KGHSDTVTSLLFW-DEYLFSSSLDETIKIWLYTHTKNNAEL---SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFK--- 325 (371)
Q Consensus 253 ~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--- 325 (371)
.+|.++|.++.|. ...+++++.|.+|+.||+.+.+....+ ..+.++...+...+|++|+.|..+++||.+++.
T Consensus 257 ~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 257 EGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 9999999999999 679999999999999999988764333 234444555566699999999999999998864
Q ss_pred eeeeec-CCceEEEEEeCCCC--eEEeeCCCCcEEEEEccccc
Q 041206 326 LRARIF-SRREVEVDQIGPAG--LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 326 ~~~~~~-~~~~v~~~~~s~~~--~l~~~~~dg~i~iw~~~~~~ 365 (371)
....+. |.+.|.++.|+|.. .|++|+.|+++++||+++..
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 223333 68899999999988 99999999999999998765
No 58
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.6e-28 Score=237.86 Aligned_cols=240 Identities=13% Similarity=0.158 Sum_probs=189.1
Q ss_pred eeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEE
Q 041206 92 LNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNAL 171 (371)
Q Consensus 92 l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~ 171 (371)
+.+|.+.|++++|+|++++||+|+.|+.|+||+......... ..+.++..+ .....+.++
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-~~~~~~~~~-------------------~~~~~v~~l 538 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR-DIHYPVVEL-------------------ASRSKLSGI 538 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc-ccccceEEe-------------------cccCceeeE
Confidence 456999999999999999999999999999999764211000 000000000 012357888
Q ss_pred EEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecC-Cce-eEecccceeeeeCCCeEEEEECCC
Q 041206 172 VVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSN-DTR-WNSKEEAAVFEFCGHTTRTWNLDN 245 (371)
Q Consensus 172 ~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~-~~~-l~~~~~~~~~~~~dg~i~iwd~~~ 245 (371)
+|++. ++++++.||.|++||+.++ +.+..+.+|. .|.+++|+| ++. |++| +.|+.|++||+++
T Consensus 539 ~~~~~~~~~las~~~Dg~v~lWd~~~~----~~~~~~~~H~~~V~~l~~~p~~~~~L~Sg-------s~Dg~v~iWd~~~ 607 (793)
T PLN00181 539 CWNSYIKSQVASSNFEGVVQVWDVARS----QLVTEMKEHEKRVWSIDYSSADPTLLASG-------SDDGSVKLWSINQ 607 (793)
T ss_pred EeccCCCCEEEEEeCCCeEEEEECCCC----eEEEEecCCCCCEEEEEEcCCCCCEEEEE-------cCCCEEEEEECCC
Confidence 99763 8999999999999999987 7888899999 999999997 554 8899 9999999999999
Q ss_pred ceEEEEeecCCCcEEEEEEc---CCeEEEEeCCCcEEEEEccCCCC-----cceecceEEEEecCCCCEEEEecCCCeEE
Q 041206 246 LECVQTLKGHSDTVTSLLFW---DEYLFSSSLDETIKIWLYTHTKN-----NAELSSLFGMLDAEAKPVLFSSGKDSAIR 317 (371)
Q Consensus 246 ~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 317 (371)
++.+..+..+ ..+.++.|. +.+|++|+.|+.|++||++.... ..+...+..+.+.++ .++++++.|++|+
T Consensus 608 ~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~-~~lvs~s~D~~ik 685 (793)
T PLN00181 608 GVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDS-STLVSSSTDNTLK 685 (793)
T ss_pred CcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCC-CEEEEEECCCEEE
Confidence 9998888754 679999995 67999999999999999976542 122234555555544 4899999999999
Q ss_pred EEEcCCc------ceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccc
Q 041206 318 LYELPSF------KLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 318 iwd~~~~------~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
+||+... .++..+. |...+..++|+|++ +|++|+.||.|++|+....
T Consensus 686 iWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 686 LWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999743 4455554 56788999999999 9999999999999997643
No 59
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.5e-30 Score=227.65 Aligned_cols=265 Identities=13% Similarity=0.162 Sum_probs=202.1
Q ss_pred eeeEeee-CccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe-----------C---CCe------------
Q 041206 87 ATLMKLN-GHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVIT-----------N---GAE------------ 139 (371)
Q Consensus 87 ~~~~~l~-~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-----------~---~~~------------ 139 (371)
...+.+. +|.+.|.++.||+||+|||+|+.||.|+||.+...+....-. . ..+
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 3445666 899999999999999999999999999999986522110000 0 000
Q ss_pred --------eEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC-EEEEEeCCCeEEEEeccCCCCcceeeEEEecCcc
Q 041206 140 --------IGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND-LLFAGSEGGVISVWKGTFVANPFKQVASIRAPLW 210 (371)
Q Consensus 140 --------~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 210 (371)
..+ ..-...++.-.+..++.|.-|++.|.++.|+.+ +|++++-|.+|++|++... .++..|....-
T Consensus 337 s~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~----~CL~~F~Hndf 411 (712)
T KOG0283|consen 337 SSSRKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRK----ECLKVFSHNDF 411 (712)
T ss_pred cccccccCCcc-ccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCc----ceeeEEecCCe
Confidence 000 001223334456788888899999999999988 9999999999999999987 78888776669
Q ss_pred eEEEEecCCc--eeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCC
Q 041206 211 FCSLSSSNDT--RWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHT 286 (371)
Q Consensus 211 v~~~~~~~~~--~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~ 286 (371)
|+|++|+|-. .+++| +-|+.|+||++...+.+.-.. -..-|++++|. |++.+.|+.+|.+++|+....
T Consensus 412 VTcVaFnPvDDryFiSG-------SLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISG-------SLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL 483 (712)
T ss_pred eEEEEecccCCCcEeec-------ccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCC
Confidence 9999999933 49999 999999999999877765444 34889999998 789999999999999994433
Q ss_pred CC------------cceecceEEEEecCC-CCEEEEecCCCeEEEEEcCCcceeeeecC---CceEEEEEeCCCC-eEEe
Q 041206 287 KN------------NAELSSLFGMLDAEA-KPVLFSSGKDSAIRLYELPSFKLRARIFS---RREVEVDQIGPAG-LFFP 349 (371)
Q Consensus 287 ~~------------~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~-~l~~ 349 (371)
+. +..-..|+++.+.++ ...+++.+.|..|||||.++..++..+++ ...-....|+.|| +|++
T Consensus 484 k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs 563 (712)
T KOG0283|consen 484 KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVS 563 (712)
T ss_pred eEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEE
Confidence 21 111113555544433 33577788999999999998888888874 3444667899999 9999
Q ss_pred eCCCCcEEEEEcccc
Q 041206 350 GDASGSVGVWKWLLA 364 (371)
Q Consensus 350 ~~~dg~i~iw~~~~~ 364 (371)
++.|..|++|++...
T Consensus 564 ~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 564 ASEDSWVYIWKNDSF 578 (712)
T ss_pred eecCceEEEEeCCCC
Confidence 999999999998543
No 60
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.5e-30 Score=208.51 Aligned_cols=275 Identities=18% Similarity=0.267 Sum_probs=224.5
Q ss_pred cceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 041206 43 FGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSV 122 (371)
Q Consensus 43 ~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~i 122 (371)
.-+.|..|+|...++ ++++.|++|.+|++....-...-.++..-.|--|.++|.|+.|+.|...||+|+.||.|++
T Consensus 214 Sh~EcA~FSPDgqyL----vsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 214 SHVECARFSPDGQYL----VSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred cchhheeeCCCCceE----eeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 334466688876653 3578999999999654322222223333445558899999999999999999999999999
Q ss_pred EECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcce
Q 041206 123 WDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFK 200 (371)
Q Consensus 123 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~ 200 (371)
|.+++|.|++.|.. .|+..|+|+.|+.+ .+++++.|.++++--+..+ +
T Consensus 290 Wri~tG~ClRrFdr--------------------------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG----K 339 (508)
T KOG0275|consen 290 WRIETGQCLRRFDR--------------------------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG----K 339 (508)
T ss_pred EEEecchHHHHhhh--------------------------hhccCeeEEEEccCcchhhcccccceEEEeccccc----h
Confidence 99999999988763 36778999999988 9999999999999999999 8
Q ss_pred eeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecC--CCcEEEEEEc---CCeEEEEe
Q 041206 201 QVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGH--SDTVTSLLFW---DEYLFSSS 273 (371)
Q Consensus 201 ~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~---~~~l~s~~ 273 (371)
++..+++|. .|+...|.+||. ++++ +.||+|++|+.++.+++.+|+.. ..+|.++... +..++.|.
T Consensus 340 ~LKEfrGHsSyvn~a~ft~dG~~iisa-------SsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN 412 (508)
T KOG0275|consen 340 CLKEFRGHSSYVNEATFTDDGHHIISA-------SSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN 412 (508)
T ss_pred hHHHhcCccccccceEEcCCCCeEEEe-------cCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc
Confidence 999999999 999999999996 9999 99999999999999999988743 4477777665 67899999
Q ss_pred CCCcEEEEEccCC--------CCcceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCC
Q 041206 274 LDETIKIWLYTHT--------KNNAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPA 344 (371)
Q Consensus 274 ~dg~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~ 344 (371)
...++.+-++... +..+ -.-+++..++.+. ++.+.++|+.++.|.+.++++-..+. |...|..++-+|.
T Consensus 413 rsntv~imn~qGQvVrsfsSGkREg-GdFi~~~lSpkGe-wiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPH 490 (508)
T KOG0275|consen 413 RSNTVYIMNMQGQVVRSFSSGKREG-GDFINAILSPKGE-WIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPH 490 (508)
T ss_pred CCCeEEEEeccceEEeeeccCCccC-CceEEEEecCCCc-EEEEEccCcEEEEEEeecCceeeeeecccccccccccCcc
Confidence 9999999885422 1111 1124444555555 99999999999999999999887776 6788999999998
Q ss_pred C-eEEeeCCCCcEEEEE
Q 041206 345 G-LFFPGDASGSVGVWK 360 (371)
Q Consensus 345 ~-~l~~~~~dg~i~iw~ 360 (371)
. .||+-+.||.+++|.
T Consensus 491 qNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 491 QNLLASYSEDGLLKLWK 507 (508)
T ss_pred cchhhhhcccchhhhcC
Confidence 8 999999999999995
No 61
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=7.2e-30 Score=204.58 Aligned_cols=245 Identities=20% Similarity=0.289 Sum_probs=203.8
Q ss_pred CccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEE
Q 041206 94 GHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVV 173 (371)
Q Consensus 94 ~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~ 173 (371)
|....+.|..|+|||++|++|+.||.|.+||..+|+..+.++-...-. +-+...+|.|+.|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~-------------------fMMmd~aVlci~F 271 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDN-------------------FMMMDDAVLCISF 271 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcc-------------------eeecccceEEEee
Confidence 456778999999999999999999999999999999877665433211 1124557999999
Q ss_pred eCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEe-cCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceE
Q 041206 174 NND--LLFAGSEGGVISVWKGTFVANPFKQVASIR-APL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLEC 248 (371)
Q Consensus 174 ~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~ 248 (371)
+.+ .+++|+.||.|++|.++++ .+++.+. .|. .|+|+.|+.|+. ++++ +.|.++++--+++|++
T Consensus 272 SRDsEMlAsGsqDGkIKvWri~tG----~ClRrFdrAHtkGvt~l~FSrD~SqiLS~-------sfD~tvRiHGlKSGK~ 340 (508)
T KOG0275|consen 272 SRDSEMLASGSQDGKIKVWRIETG----QCLRRFDRAHTKGVTCLSFSRDNSQILSA-------SFDQTVRIHGLKSGKC 340 (508)
T ss_pred cccHHHhhccCcCCcEEEEEEecc----hHHHHhhhhhccCeeEEEEccCcchhhcc-------cccceEEEeccccchh
Confidence 988 9999999999999999999 8888887 788 999999999985 9999 9999999999999999
Q ss_pred EEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCccee------cc-eEEEEecCCCCEEEEecCCCeEEEE
Q 041206 249 VQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAEL------SS-LFGMLDAEAKPVLFSSGKDSAIRLY 319 (371)
Q Consensus 249 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~------~~-~~~~~~~~~~~~l~~~~~d~~i~iw 319 (371)
++.+++|...|+...|. ++++++++.||+|++|+.++.+..... .. ......|.+...++++...++|+|.
T Consensus 341 LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~im 420 (508)
T KOG0275|consen 341 LKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIM 420 (508)
T ss_pred HHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEE
Confidence 99999999999999998 889999999999999997766531111 11 2223566667789999999999999
Q ss_pred EcCCcceeeeecC----CceEEEEEeCCCC-eEEeeCCCCcEEEEEccccceecc
Q 041206 320 ELPSFKLRARIFS----RREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQKM 369 (371)
Q Consensus 320 d~~~~~~~~~~~~----~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~~~ 369 (371)
++.. +.+..+.. .+...+...||.| ++.+.+.|+.++.|.+.++.+.++
T Consensus 421 n~qG-QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~t 474 (508)
T KOG0275|consen 421 NMQG-QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERT 474 (508)
T ss_pred eccc-eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeee
Confidence 9864 55555542 4566777899999 999999999999999998877654
No 62
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-29 Score=227.15 Aligned_cols=239 Identities=17% Similarity=0.314 Sum_probs=206.2
Q ss_pred eeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeE
Q 041206 91 KLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNA 170 (371)
Q Consensus 91 ~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~ 170 (371)
.+...+..|-.++|+|....++++-..|.|++||.+-+.++..|.. |.++|..
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFde---------------------------HdGpVRg 56 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDE---------------------------HDGPVRG 56 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhc---------------------------cCCccce
Confidence 4555678899999999999999999999999999999988877764 7778999
Q ss_pred EEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCc
Q 041206 171 LVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNL 246 (371)
Q Consensus 171 ~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~ 246 (371)
++|+|+ ++++|+.|-.|++|+..+. +++.++.+|- .|+.+.|++.-. ++++ +.|.+|+||+..++
T Consensus 57 v~FH~~qplFVSGGDDykIkVWnYk~r----rclftL~GHlDYVRt~~FHheyPWIlSA-------SDDQTIrIWNwqsr 125 (1202)
T KOG0292|consen 57 VDFHPTQPLFVSGGDDYKIKVWNYKTR----RCLFTLLGHLDYVRTVFFHHEYPWILSA-------SDDQTIRIWNWQSR 125 (1202)
T ss_pred eeecCCCCeEEecCCccEEEEEecccc----eehhhhccccceeEEeeccCCCceEEEc-------cCCCeEEEEeccCC
Confidence 999998 9999999999999999998 8999999999 999999999765 8999 99999999999999
Q ss_pred eEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC---------------------------------cce
Q 041206 247 ECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN---------------------------------NAE 291 (371)
Q Consensus 247 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~---------------------------------~~~ 291 (371)
+++..+.+|...|.|..|+ .+.++++|-|.+||+||+...+. .++
T Consensus 126 ~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH 205 (1202)
T KOG0292|consen 126 KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH 205 (1202)
T ss_pred ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc
Confidence 9999999999999999999 57999999999999999543221 222
Q ss_pred ecceEEEEecCCCCEEEEecCCCeEEEEEcCCcce--eeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccccee
Q 041206 292 LSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKL--RARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 292 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~ 367 (371)
-..+..+.+.+.-+++++|+.|..|++|.+...+- +.... |.+.|.++-|+|.. ++++.|.|+.|+|||+......
T Consensus 206 DRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v 285 (1202)
T KOG0292|consen 206 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSV 285 (1202)
T ss_pred ccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccce
Confidence 24555566777777999999999999999876442 22222 67899999999988 9999999999999999876543
No 63
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=7.8e-29 Score=223.56 Aligned_cols=250 Identities=28% Similarity=0.417 Sum_probs=213.9
Q ss_pred cccceeEEE-EEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCC
Q 041206 29 LMKGRAEER-EEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSG 107 (371)
Q Consensus 29 ~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~ 107 (371)
...+..+.. +.||.++|.++++.... ...+.|+.|+.+++|+ ..++++.+++.||.+.|.++...
T Consensus 235 ~~~~~~i~~~l~GH~g~V~~l~~~~~~----~~lvsgS~D~t~rvWd--------~~sg~C~~~l~gh~stv~~~~~~-- 300 (537)
T KOG0274|consen 235 LNNGYLILTRLVGHFGGVWGLAFPSGG----DKLVSGSTDKTERVWD--------CSTGECTHSLQGHTSSVRCLTID-- 300 (537)
T ss_pred cccceEEEeeccCCCCCceeEEEecCC----CEEEEEecCCcEEeEe--------cCCCcEEEEecCCCceEEEEEcc--
Confidence 335666766 99999999999987622 2334488999999999 57789999999999999999876
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCCEEEEEeCCCeE
Q 041206 108 SNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNNDLLFAGSEGGVI 187 (371)
Q Consensus 108 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~l~~~~~dg~v 187 (371)
+.++++|+.|.+|++|+++++.++..+.. |+++|.++..+.+++++|+.|+.|
T Consensus 301 ~~~~~sgs~D~tVkVW~v~n~~~l~l~~~---------------------------h~~~V~~v~~~~~~lvsgs~d~~v 353 (537)
T KOG0274|consen 301 PFLLVSGSRDNTVKVWDVTNGACLNLLRG---------------------------HTGPVNCVQLDEPLLVSGSYDGTV 353 (537)
T ss_pred CceEeeccCCceEEEEeccCcceEEEecc---------------------------ccccEEEEEecCCEEEEEecCceE
Confidence 45889999999999999999999998874 455699999998899999999999
Q ss_pred EEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCc-eEEEEeecCCCcEEEEEEc
Q 041206 188 SVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNL-ECVQTLKGHSDTVTSLLFW 265 (371)
Q Consensus 188 ~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~ 265 (371)
++||+.+. +++..+.+|. .|.++.+.+...+++| +.|+.|++||+++. +++.++.+|..-+..+.+.
T Consensus 354 ~VW~~~~~----~cl~sl~gH~~~V~sl~~~~~~~~~Sg-------s~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~ 422 (537)
T KOG0274|consen 354 KVWDPRTG----KCLKSLSGHTGRVYSLIVDSENRLLSG-------SLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR 422 (537)
T ss_pred EEEEhhhc----eeeeeecCCcceEEEEEecCcceEEee-------eeccceEeecCCchhhhhhhhcCCcccccccccc
Confidence 99999988 9999999999 9999988887669999 99999999999999 9999999999999999999
Q ss_pred CCeEEEEeCCCcEEEEEccCCCCcce-----ecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecC
Q 041206 266 DEYLFSSSLDETIKIWLYTHTKNNAE-----LSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFS 332 (371)
Q Consensus 266 ~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 332 (371)
+++|++++.|++|++||....+.... ...+..+... ...+++++.|+.+++||++++++...+..
T Consensus 423 ~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~ 492 (537)
T KOG0274|consen 423 DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLS 492 (537)
T ss_pred cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhhhh
Confidence 99999999999999999877664222 2233322222 35799999999999999999998887753
No 64
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=1.5e-28 Score=208.04 Aligned_cols=267 Identities=15% Similarity=0.219 Sum_probs=203.4
Q ss_pred eeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-EEEEeC-----CCeeEEEee--c-CCEEEEecCCc
Q 041206 87 ATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRC-VNVITN-----GAEIGCLIS--E-GSWVFLGLPNA 157 (371)
Q Consensus 87 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~-----~~~~~~~~~--~-~~~~~~~~~~~ 157 (371)
..-..|++|+..|.++++.|.|.+|+||+.|.+|++||+..... .+.++. ...+..+.+ . +.+|+++....
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 34457899999999999999999999999999999999875421 112221 233555543 3 44555667777
Q ss_pred EEEEEeCCC-----------------------CeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEec--Cc
Q 041206 158 VKSWRVNAA-----------------------SVNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRA--PL 209 (371)
Q Consensus 158 i~~~~~~~~-----------------------~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~ 209 (371)
.+++|.... .++|-+|+|. .+++++.||++++||+.....+.+.+..-.. ..
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 788776544 7899999998 8999999999999999987644343333222 22
Q ss_pred -ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceE---EEEeecCCC--cEEEEEEc--CCeEEEEeCCCcEEE
Q 041206 210 -WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLEC---VQTLKGHSD--TVTSLLFW--DEYLFSSSLDETIKI 280 (371)
Q Consensus 210 -~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~---~~~~~~~~~--~v~~~~~~--~~~l~s~~~dg~i~i 280 (371)
++++++|++|++ +++| ..||.|.+|+...... ...-.+|.. .|+|+.|+ +++|++-+.|+++++
T Consensus 318 v~~tsC~~nrdg~~iAag-------c~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAG-------CLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKV 390 (641)
T ss_pred cCceeeecCCCcchhhhc-------ccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceee
Confidence 889999999997 7888 9999999999865322 233357777 99999999 899999999999999
Q ss_pred EEccCCCCccee-------cceEEEEecCCCCEEEEecC------CCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-
Q 041206 281 WLYTHTKNNAEL-------SSLFGMLDAEAKPVLFSSGK------DSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG- 345 (371)
Q Consensus 281 wd~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~- 345 (371)
||++..+..-.. .....+.++++.++|++|.. .|++.+||..+...++++. ....|..+.|+|.-
T Consensus 391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLN 470 (641)
T KOG0772|consen 391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLN 470 (641)
T ss_pred eeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhh
Confidence 999887642111 11222344455558888853 5789999999999998887 57889999999987
Q ss_pred eEEeeCCCCcEEEEE
Q 041206 346 LFFPGDASGSVGVWK 360 (371)
Q Consensus 346 ~l~~~~~dg~i~iw~ 360 (371)
.|.+|+.||.++||=
T Consensus 471 Qi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 471 QIFAGSGDGTAHVYY 485 (641)
T ss_pred heeeecCCCceEEEE
Confidence 899999999999873
No 65
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.7e-29 Score=192.43 Aligned_cols=240 Identities=13% Similarity=0.176 Sum_probs=191.7
Q ss_pred CCceeeEeeeCccCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEE
Q 041206 84 NSLATLMKLNGHKKAVTNVGLPS-GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWR 162 (371)
Q Consensus 84 ~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 162 (371)
.+..+...+. -++.+..++|++ ..+.+++++.||+++|||+... .+.|++|.
T Consensus 49 ~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~--------------------------s~Pi~~~k 101 (311)
T KOG0277|consen 49 KGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP--------------------------SKPIHKFK 101 (311)
T ss_pred CCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCCC--------------------------CcchhHHH
Confidence 3444455554 467899999999 5678999999999999995422 12344555
Q ss_pred eCCCCeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc--eeEecccceeeeeCCC
Q 041206 163 VNAASVNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT--RWNSKEEAAVFEFCGH 236 (371)
Q Consensus 163 ~~~~~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~--~l~~~~~~~~~~~~dg 236 (371)
-|..+|.++.|++. .+++++.|++|++|+...+ ..+.++.+|. .|...+|+|.. .++++ +.|+
T Consensus 102 EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~----~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~-------Sgd~ 170 (311)
T KOG0277|consen 102 EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP----NSVQTFNGHNSCIYQAAFSPHIPNLFASA-------SGDG 170 (311)
T ss_pred hhhhheEEeccccccceeEEeeccCCceEeecCCCC----cceEeecCCccEEEEEecCCCCCCeEEEc-------cCCc
Confidence 57778999999876 7888899999999999988 7889999999 99999999954 38888 9999
Q ss_pred eEEEEECCCceEEEEeecCCCcEEEEEEc---CCeEEEEeCCCcEEEEEccCCCC-----cceecceEEE-EecCCCCEE
Q 041206 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFW---DEYLFSSSLDETIKIWLYTHTKN-----NAELSSLFGM-LDAEAKPVL 307 (371)
Q Consensus 237 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~-~~~~~~~~l 307 (371)
.+++||++..-....+..|..+|.++.|+ ++.++|++.|+.|+.||++..+. .++..++..+ ++|....+|
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lL 250 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLL 250 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHh
Confidence 99999998654444589999999999998 68999999999999999887653 2222244444 344445689
Q ss_pred EEecCCCeEEEEEcCCcc-eeeeec-CCceEEEEEeCCCC--eEEeeCCCCcEEEEEc
Q 041206 308 FSSGKDSAIRLYELPSFK-LRARIF-SRREVEVDQIGPAG--LFFPGDASGSVGVWKW 361 (371)
Q Consensus 308 ~~~~~d~~i~iwd~~~~~-~~~~~~-~~~~v~~~~~s~~~--~l~~~~~dg~i~iw~~ 361 (371)
++++.|-++||||...+. .+.+.. |.+-|..+.||+-. ++|+++.|+.++||+.
T Consensus 251 aSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 251 ASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 999999999999998554 444444 67889999999865 9999999999999984
No 66
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=2.6e-27 Score=213.42 Aligned_cols=225 Identities=17% Similarity=0.198 Sum_probs=174.3
Q ss_pred EeeeCccCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCe
Q 041206 90 MKLNGHKKAVTNVGLPS-GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASV 168 (371)
Q Consensus 90 ~~l~~h~~~V~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v 168 (371)
..+.||.+.|++++|+| ++++|++|+.|++|++||+.++...... ...+..+..|...|
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~--------------------~~~l~~L~gH~~~V 128 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNI--------------------SDPIVHLQGHTKKV 128 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccccc--------------------CcceEEecCCCCcE
Confidence 35789999999999999 8899999999999999999865321110 01233344577789
Q ss_pred eEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEEC
Q 041206 169 NALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNL 243 (371)
Q Consensus 169 ~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~ 243 (371)
.+++|+|. +|++++.|+.|++||++++ +....+..|. .|.+++|+|++. ++++ +.|+.|++||+
T Consensus 129 ~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg----~~~~~l~~h~~~V~sla~spdG~lLatg-------s~Dg~IrIwD~ 197 (493)
T PTZ00421 129 GIVSFHPSAMNVLASAGADMVVNVWDVERG----KAVEVIKCHSDQITSLEWNLDGSLLCTT-------SKDKKLNIIDP 197 (493)
T ss_pred EEEEeCcCCCCEEEEEeCCCEEEEEECCCC----eEEEEEcCCCCceEEEEEECCCCEEEEe-------cCCCEEEEEEC
Confidence 99999985 8999999999999999988 7788888898 999999999986 8899 99999999999
Q ss_pred CCceEEEEeecCCCcE-EEEEEc--CCeEEEEe----CCCcEEEEEccCCCCcce------ecceEEEEecCCCCEEEEe
Q 041206 244 DNLECVQTLKGHSDTV-TSLLFW--DEYLFSSS----LDETIKIWLYTHTKNNAE------LSSLFGMLDAEAKPVLFSS 310 (371)
Q Consensus 244 ~~~~~~~~~~~~~~~v-~~~~~~--~~~l~s~~----~dg~i~iwd~~~~~~~~~------~~~~~~~~~~~~~~~l~~~ 310 (371)
++++.+..+.+|.+.+ ..+.|. ++.+++++ .|+.|++||++....... ...+...++.+++.+++++
T Consensus 198 rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lg 277 (493)
T PTZ00421 198 RDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIG 277 (493)
T ss_pred CCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEE
Confidence 9999999999998754 355666 45666654 478999999886542211 1123333455555577777
Q ss_pred c-CCCeEEEEEcCCcceeeeec--CCceEEEEEeCCCC
Q 041206 311 G-KDSAIRLYELPSFKLRARIF--SRREVEVDQIGPAG 345 (371)
Q Consensus 311 ~-~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~ 345 (371)
+ .|+.|++||+.++++..... ...++..++|.|.-
T Consensus 278 gkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 278 SKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred EeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 6 59999999999988766543 45678888888863
No 67
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=3e-28 Score=212.94 Aligned_cols=280 Identities=17% Similarity=0.247 Sum_probs=225.8
Q ss_pred cceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEE-EEEcC-CC
Q 041206 31 KGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTN-VGLPS-GS 108 (371)
Q Consensus 31 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~-~~~~~-~~ 108 (371)
.-++-+.+.+|.+.|..++..+..-. ..++.++.+++|.. .....-....+.+|.+-|.. +++-+ ++
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~~~i-----~s~sRd~t~~vw~~------~~~~~l~~~~~~~~~g~i~~~i~y~e~~~ 71 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDGVCI-----ISGSRDGTVKVWAK------KGKQYLETHAFEGPKGFIANSICYAESDK 71 (745)
T ss_pred cceeEEEeccCccchheeEecCCeEE-----eecCCCCceeeeec------cCcccccceecccCcceeeccceeccccC
Confidence 34567889999999988886654422 34778999999992 13344445678899998888 88876 55
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC-EEEEEeCCCeE
Q 041206 109 NKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND-LLFAGSEGGVI 187 (371)
Q Consensus 109 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~-~l~~~~~dg~v 187 (371)
-++++|+.|.+|.+|......+..++.. |...|.+++...+ .+++|+.|.++
T Consensus 72 ~~l~~g~~D~~i~v~~~~~~~P~~~Lkg---------------------------H~snVC~ls~~~~~~~iSgSWD~Ta 124 (745)
T KOG0301|consen 72 GRLVVGGMDTTIIVFKLSQAEPLYTLKG---------------------------HKSNVCSLSIGEDGTLISGSWDSTA 124 (745)
T ss_pred cceEeecccceEEEEecCCCCchhhhhc---------------------------cccceeeeecCCcCceEecccccce
Confidence 6799999999999999999999888876 4456888887766 88999999999
Q ss_pred EEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc-
Q 041206 188 SVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW- 265 (371)
Q Consensus 188 ~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~- 265 (371)
++|-... +...+++|+ .|.+++.-|++.+++| +.|.+|++|.- ++.+++|.+|.+.|+.+++-
T Consensus 125 kvW~~~~------l~~~l~gH~asVWAv~~l~e~~~vTg-------saDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~ 189 (745)
T KOG0301|consen 125 KVWRIGE------LVYSLQGHTASVWAVASLPENTYVTG-------SADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD 189 (745)
T ss_pred EEecchh------hhcccCCcchheeeeeecCCCcEEec-------cCcceeeeccC--CchhhhhccchhheeeeEEec
Confidence 9998764 456699999 9999999999999999 99999999976 68899999999999999998
Q ss_pred CCeEEEEeCCCcEEEEEccCCC---CcceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecCC-ceEEEEEe
Q 041206 266 DEYLFSSSLDETIKIWLYTHTK---NNAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSR-REVEVDQI 341 (371)
Q Consensus 266 ~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~ 341 (371)
+..|++|+.||.|++|++.... ..++.+-+..+....+...++++++|++++||+.. ++.+.+.+. ..|+++.+
T Consensus 190 ~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~ 267 (745)
T KOG0301|consen 190 DSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKV 267 (745)
T ss_pred CCCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEE
Confidence 5599999999999999984322 22333223333323344499999999999999987 666666654 48999999
Q ss_pred CCCCeEEeeCCCCcEEEEEccccc
Q 041206 342 GPAGLFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 342 s~~~~l~~~~~dg~i~iw~~~~~~ 365 (371)
-++|-+++|+.||.||||.....+
T Consensus 268 L~NgDIvvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 268 LLNGDIVVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred eeCCCEEEeccCceEEEEEecccc
Confidence 999999999999999999987543
No 68
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.1e-29 Score=204.40 Aligned_cols=272 Identities=14% Similarity=0.187 Sum_probs=218.3
Q ss_pred cceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCE
Q 041206 31 KGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNK 110 (371)
Q Consensus 31 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 110 (371)
....+..+.+|.+||.++|.+|... ..+.+|+.|+-+++|+ ....+++.+++.|.+.|..+++.. ..
T Consensus 55 akPFv~~L~gHrdGV~~lakhp~~l---s~~aSGs~DG~VkiWn--------lsqR~~~~~f~AH~G~V~Gi~v~~--~~ 121 (433)
T KOG0268|consen 55 AKPFVGSLDGHRDGVSCLAKHPNKL---STVASGSCDGEVKIWN--------LSQRECIRTFKAHEGLVRGICVTQ--TS 121 (433)
T ss_pred hccchhhccccccccchhhcCcchh---hhhhccccCceEEEEe--------hhhhhhhheeecccCceeeEEecc--cc
Confidence 4556777899999999999998553 2455688999999999 345678999999999999999986 78
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeec-CCEEEEecCCcEEEEEeCCC-----------CeeEEEEeCC--
Q 041206 111 LYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISE-GSWVFLGLPNAVKSWRVNAA-----------SVNALVVNND-- 176 (371)
Q Consensus 111 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~-----------~v~~~~~~~~-- 176 (371)
+++++.|.+|+.|.++- ..++++.....+..+... ..-+++.....|.+||.... .|.++.|+|.
T Consensus 122 ~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET 200 (433)
T KOG0268|consen 122 FFTVGDDKTVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVET 200 (433)
T ss_pred eEEecCCcceeeeeccC-CcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcc
Confidence 99999999999999874 566777665555544432 33344555567888887433 6788888887
Q ss_pred -EEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCc-eEEEEee
Q 041206 177 -LLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNL-ECVQTLK 253 (371)
Q Consensus 177 -~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~ 253 (371)
.|+++..|+.|.+||+++. .++..+.....-+.++|+|... +.++ ++|..++.||++.. .++..+.
T Consensus 201 sILas~~sDrsIvLyD~R~~----~Pl~KVi~~mRTN~IswnPeafnF~~a-------~ED~nlY~~DmR~l~~p~~v~~ 269 (433)
T KOG0268|consen 201 SILASCASDRSIVLYDLRQA----SPLKKVILTMRTNTICWNPEAFNFVAA-------NEDHNLYTYDMRNLSRPLNVHK 269 (433)
T ss_pred hheeeeccCCceEEEecccC----CccceeeeeccccceecCccccceeec-------cccccceehhhhhhcccchhhc
Confidence 8888889999999999998 6666555444678899999665 8889 99999999999874 4678889
Q ss_pred cCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC-----cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcce
Q 041206 254 GHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN-----NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKL 326 (371)
Q Consensus 254 ~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 326 (371)
+|...|.++.|+ |+.+++||.|.+|+||....... ...+..+.++.++-+.+++++||.|+.|++|...-.+.
T Consensus 270 dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 270 DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred ccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 999999999999 78999999999999999877653 33445666777777777999999999999998765443
Q ss_pred e
Q 041206 327 R 327 (371)
Q Consensus 327 ~ 327 (371)
+
T Consensus 350 l 350 (433)
T KOG0268|consen 350 L 350 (433)
T ss_pred c
Confidence 3
No 69
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1e-27 Score=200.34 Aligned_cols=285 Identities=17% Similarity=0.240 Sum_probs=223.5
Q ss_pred EEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCC---ccC------CceeeEee-eCccCCeEEEEE
Q 041206 35 EEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDN---TTN------SLATLMKL-NGHKKAVTNVGL 104 (371)
Q Consensus 35 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~------~~~~~~~l-~~h~~~V~~~~~ 104 (371)
+.....|.-.+.+++.+|...+ .+..+.+++|--|......+. ... .+.+...- ++|...|.+++.
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~----~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av 210 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKR----VFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV 210 (479)
T ss_pred ceeeccccCcceEEEeeccccc----eeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE
Confidence 5667889999999999996543 233567778888886554321 111 12222222 489999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEe
Q 041206 105 PSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGS 182 (371)
Q Consensus 105 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~ 182 (371)
++|++|||+|+.|..|.||+.++.+.++.+.. |.+.|.+++|-.. .+++++
T Consensus 211 S~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~g---------------------------hr~~V~~L~fr~gt~~lys~s 263 (479)
T KOG0299|consen 211 SSDGKYLATGGRDRHVQIWDCDTLEHVKVFKG---------------------------HRGAVSSLAFRKGTSELYSAS 263 (479)
T ss_pred cCCCcEEEecCCCceEEEecCcccchhhcccc---------------------------cccceeeeeeecCccceeeee
Confidence 99999999999999999999999998887665 5567999999765 999999
Q ss_pred CCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEE
Q 041206 183 EGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTS 261 (371)
Q Consensus 183 ~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 261 (371)
.|+.|++|++... ..+.++-+|+ .|.++....-+++++. ++.|.++++|++.. +....+.+|.+.+-|
T Consensus 264 ~Drsvkvw~~~~~----s~vetlyGHqd~v~~IdaL~reR~vtV------GgrDrT~rlwKi~e-esqlifrg~~~sidc 332 (479)
T KOG0299|consen 264 ADRSVKVWSIDQL----SYVETLYGHQDGVLGIDALSRERCVTV------GGRDRTVRLWKIPE-ESQLIFRGGEGSIDC 332 (479)
T ss_pred cCCceEEEehhHh----HHHHHHhCCccceeeechhcccceEEe------ccccceeEEEeccc-cceeeeeCCCCCeee
Confidence 9999999999988 7888999999 9999998887875544 16999999999954 344567889999999
Q ss_pred EEEc-CCeEEEEeCCCcEEEEEccCCCC------------c-cee---cceEEEEecCCCCEEEEecCCCeEEEEEcCCc
Q 041206 262 LLFW-DEYLFSSSLDETIKIWLYTHTKN------------N-AEL---SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSF 324 (371)
Q Consensus 262 ~~~~-~~~l~s~~~dg~i~iwd~~~~~~------------~-~~~---~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 324 (371)
++|- ...+++|+.+|.|.+|++...++ . ..+ ..++++...++..++++|+.+|.|++|.+..+
T Consensus 333 v~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 333 VAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred EEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 9998 78999999999999999655442 0 111 25667777778889999999999999998876
Q ss_pred ----ceeeeecCCceEEEEEeCCCC--eEEeeCCCCcEEEEEc
Q 041206 325 ----KLRARIFSRREVEVDQIGPAG--LFFPGDASGSVGVWKW 361 (371)
Q Consensus 325 ----~~~~~~~~~~~v~~~~~s~~~--~l~~~~~dg~i~iw~~ 361 (371)
.++..+.-.+-|++++|+++| .++..+....+--|-.
T Consensus 413 ~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 413 LRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred ccccceeeecccccEEEEEEEccCCCEEEEecccccccceeeE
Confidence 455566668999999999999 4555555555555543
No 70
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=2.6e-29 Score=207.10 Aligned_cols=279 Identities=17% Similarity=0.202 Sum_probs=229.1
Q ss_pred ceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEE
Q 041206 32 GRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKL 111 (371)
Q Consensus 32 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 111 (371)
.+....+..|...+..+.|-+ ......+++.+..|+.|+.. ....+.+.+|.|-.++|+++.|.++++.+
T Consensus 165 S~~~~~ld~h~gev~~v~~l~----~sdtlatgg~Dr~Ik~W~v~------~~k~~~~~tLaGs~g~it~~d~d~~~~~~ 234 (459)
T KOG0288|consen 165 SRALFVLDAHEGEVHDVEFLR----NSDTLATGGSDRIIKLWNVL------GEKSELISTLAGSLGNITSIDFDSDNKHV 234 (459)
T ss_pred hhhhhhhhccccccceeEEcc----Ccchhhhcchhhhhhhhhcc------cchhhhhhhhhccCCCcceeeecCCCceE
Confidence 445566788999999998888 44455568999999999943 23456888999999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEE
Q 041206 112 YSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISV 189 (371)
Q Consensus 112 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~i 189 (371)
++++.|+.+++|++...+...++.. |+..|+++.|... .+++|+.|.+|+.
T Consensus 235 iAas~d~~~r~Wnvd~~r~~~TLsG---------------------------HtdkVt~ak~~~~~~~vVsgs~DRtiK~ 287 (459)
T KOG0288|consen 235 IAASNDKNLRLWNVDSLRLRHTLSG---------------------------HTDKVTAAKFKLSHSRVVSGSADRTIKL 287 (459)
T ss_pred EeecCCCceeeeeccchhhhhhhcc---------------------------cccceeeehhhccccceeeccccchhhh
Confidence 9999999999999999999888875 5667999988766 5999999999999
Q ss_pred EeccCCCCcceeeEEEecCcceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CC
Q 041206 190 WKGTFVANPFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DE 267 (371)
Q Consensus 190 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~ 267 (371)
||+... .+..++.....+..+..+ ...+++| -.|++|+.||+++..+....+.+. .|+++..+ +.
T Consensus 288 WDl~k~----~C~kt~l~~S~cnDI~~~-~~~~~Sg-------H~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~ 354 (459)
T KOG0288|consen 288 WDLQKA----YCSKTVLPGSQCNDIVCS-ISDVISG-------HFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGL 354 (459)
T ss_pred hhhhhh----heeccccccccccceEec-ceeeeec-------ccccceEEEeccCCceeeEeecCc-ceeeEeeccCCe
Confidence 999987 566555544455666655 2347888 999999999999999999988765 89999887 77
Q ss_pred eEEEEeCCCcEEEEEccCCCCccee--------cceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecC---CceE
Q 041206 268 YLFSSSLDETIKIWLYTHTKNNAEL--------SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFS---RREV 336 (371)
Q Consensus 268 ~l~s~~~dg~i~iwd~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~v 336 (371)
.+++++.|.++.+.|+++.+..... ...+.+.++|++.|+++|+.||.|+||++.++++...+.. ...|
T Consensus 355 ~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI 434 (459)
T KOG0288|consen 355 ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAI 434 (459)
T ss_pred EEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcce
Confidence 8999999999999998887643222 1233345566666999999999999999999998877763 3369
Q ss_pred EEEEeCCCC-eEEeeCCCCcEEEEE
Q 041206 337 EVDQIGPAG-LFFPGDASGSVGVWK 360 (371)
Q Consensus 337 ~~~~~s~~~-~l~~~~~dg~i~iw~ 360 (371)
++++|+|.| .+++++.++.+.+|.
T Consensus 435 ~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 435 TSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EEEEEcCCCchhhcccCCcceEecC
Confidence 999999999 999999999999993
No 71
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=6.6e-28 Score=211.56 Aligned_cols=189 Identities=21% Similarity=0.223 Sum_probs=150.0
Q ss_pred CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc---e-eEecccceeeeeCCCeEE
Q 041206 167 SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT---R-WNSKEEAAVFEFCGHTTR 239 (371)
Q Consensus 167 ~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~---~-l~~~~~~~~~~~~dg~i~ 239 (371)
.+.+++++|+ +|++|..-|+++||++... +....+..|. .|.|+.++... + |+++ +.|..|+
T Consensus 461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l----~~~~~~eAHesEilcLeyS~p~~~~kLLASa-------srdRlIH 529 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASGDRGGNLRVYDLQEL----EYTCFMEAHESEILCLEYSFPVLTNKLLASA-------SRDRLIH 529 (1080)
T ss_pred ceEEEEECCCcceecccCccCceEEEEehhh----hhhhheecccceeEEEeecCchhhhHhhhhc-------cCCceEE
Confidence 6778888887 8888888888888888776 6777888999 99999998743 3 7888 9999999
Q ss_pred EEECCC-ceEEEEeecCCCcEEEEEEc---------------------------------------------------CC
Q 041206 240 TWNLDN-LECVQTLKGHSDTVTSLLFW---------------------------------------------------DE 267 (371)
Q Consensus 240 iwd~~~-~~~~~~~~~~~~~v~~~~~~---------------------------------------------------~~ 267 (371)
|||+.. ..+++++.+|...|+++.|- .+
T Consensus 530 V~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k 609 (1080)
T KOG1408|consen 530 VYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK 609 (1080)
T ss_pred EEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc
Confidence 999964 34566777777777766653 12
Q ss_pred eEEEEeCCCcEEEEEccCCCCcc-------eecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEE
Q 041206 268 YLFSSSLDETIKIWLYTHTKNNA-------ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVD 339 (371)
Q Consensus 268 ~l~s~~~dg~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~ 339 (371)
++++++.|..|+||++...+... +-..+..+...|.+.|+++.+.|.++.++|+-+++++.+.. |.+.|+.+
T Consensus 610 ~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~ 689 (1080)
T KOG1408|consen 610 LVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGV 689 (1080)
T ss_pred eEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeee
Confidence 67888889999999987766422 11233344555666699999999999999999999999887 67889999
Q ss_pred EeCCCC-eEEeeCCCCcEEEEEccccce
Q 041206 340 QIGPAG-LFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 340 ~~s~~~-~l~~~~~dg~i~iw~~~~~~~ 366 (371)
.|.+|- .|++.+.||.|.||.+.....
T Consensus 690 kF~nDCkHlISvsgDgCIFvW~lp~~mi 717 (1080)
T KOG1408|consen 690 KFLNDCKHLISVSGDGCIFVWKLPLTMI 717 (1080)
T ss_pred eecccchhheeecCCceEEEEECchhHh
Confidence 999999 999999999999999976443
No 72
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.8e-28 Score=187.26 Aligned_cols=233 Identities=19% Similarity=0.247 Sum_probs=186.4
Q ss_pred eccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcC-CCCEEEEEeCCCc
Q 041206 41 FGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPS-GSNKLYSGSRDGR 119 (371)
Q Consensus 41 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~~~dg~ 119 (371)
-.+++..+++++... ........|+.+++|+ ....-++++.++.|...|.++.|++ +++.++++|.|++
T Consensus 59 ~~D~LfdV~Wse~~e---~~~~~a~GDGSLrl~d-------~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~T 128 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHE---NQVIAASGDGSLRLFD-------LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGT 128 (311)
T ss_pred cccceeEeeecCCCc---ceEEEEecCceEEEec-------cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCc
Confidence 356667777766433 1223356788999999 6667789999999999999999999 6677888999999
Q ss_pred EEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC---EEEEEeCCCeEEEEeccCCC
Q 041206 120 VSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND---LLFAGSEGGVISVWKGTFVA 196 (371)
Q Consensus 120 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~ 196 (371)
|++|+..-++.+.++..+.. -|+...|+|. .+++++.|+.+++||++..
T Consensus 129 iKLW~~~r~~Sv~Tf~gh~~---------------------------~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~- 180 (311)
T KOG0277|consen 129 IKLWDPNRPNSVQTFNGHNS---------------------------CIYQAAFSPHIPNLFASASGDGTLRLWDVRSP- 180 (311)
T ss_pred eEeecCCCCcceEeecCCcc---------------------------EEEEEecCCCCCCeEEEccCCceEEEEEecCC-
Confidence 99999998888888876443 4888999887 9999999999999999887
Q ss_pred CcceeeEEEecCc-ceEEEEecCCce--eEecccceeeeeCCCeEEEEECCCc-eEEEEeecCCCcEEEEEEcC---CeE
Q 041206 197 NPFKQVASIRAPL-WFCSLSSSNDTR--WNSKEEAAVFEFCGHTTRTWNLDNL-ECVQTLKGHSDTVTSLLFWD---EYL 269 (371)
Q Consensus 197 ~~~~~~~~~~~~~-~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~---~~l 269 (371)
.....+..|. ++.|+.|+.-.. +++| +.|+.|++||++.. .++..+.+|.-.|..+.|++ ..|
T Consensus 181 ---gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg-------~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lL 250 (311)
T KOG0277|consen 181 ---GKFMSIEAHNSEILCCDWSKYNHNVLATG-------GVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLL 250 (311)
T ss_pred ---CceeEEEeccceeEeecccccCCcEEEec-------CCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHh
Confidence 3344489999 999999998553 8999 99999999999874 56889999999999999994 699
Q ss_pred EEEeCCCcEEEEEccCCCC-----cceecceEEE-EecCCCCEEEEecCCCeEEEEEc
Q 041206 270 FSSSLDETIKIWLYTHTKN-----NAELSSLFGM-LDAEAKPVLFSSGKDSAIRLYEL 321 (371)
Q Consensus 270 ~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~-~~~~~~~~l~~~~~d~~i~iwd~ 321 (371)
++++.|-+++|||...+.. ..+..-++.+ ++.-...++++.+.|..++||+.
T Consensus 251 aSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 251 ASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9999999999999775442 1111112222 23334458999999999999985
No 73
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.1e-28 Score=201.75 Aligned_cols=250 Identities=16% Similarity=0.208 Sum_probs=199.0
Q ss_pred cccCCCCceeeccCcccc----------cceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCc
Q 041206 13 HKHSEGGETMMSDDDDLM----------KGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNT 82 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d~~----------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (371)
-+||++|+|||++..|.. .-++++++.+|.+.|..+.++|...++. . -+.+..++.|+
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLl-a---Cg~~e~~~lwD-------- 297 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLL-A---CGFDEVLSLWD-------- 297 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEE-e---cCchHheeecc--------
Confidence 679999999999998822 3667899999999999999999877543 1 34455699999
Q ss_pred cCCceeeEeee-CccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC--CCeeEEE--eecCCEEEE-ecCC
Q 041206 83 TNSLATLMKLN-GHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN--GAEIGCL--ISEGSWVFL-GLPN 156 (371)
Q Consensus 83 ~~~~~~~~~l~-~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~-~~~~ 156 (371)
...+...+.+. +|...+.+++|.|||..+++|+.|+++..||++.. ....... ...+.++ .+++++++. +.|.
T Consensus 298 v~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~ 376 (519)
T KOG0293|consen 298 VDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDK 376 (519)
T ss_pred CCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEEEEeccc
Confidence 45556665553 45689999999999999999999999999998743 3322222 1234444 467777654 7899
Q ss_pred cEEEEEeCCC----------CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc---ceEEEEecC-C-
Q 041206 157 AVKSWRVNAA----------SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL---WFCSLSSSN-D- 219 (371)
Q Consensus 157 ~i~~~~~~~~----------~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~-~- 219 (371)
.|++++..+. +|++++++.+ ++++--.+..+.+||++.. +.+..+.+|. -+..-+|-. +
T Consensus 377 ~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~----~lv~kY~Ghkq~~fiIrSCFgg~~~ 452 (519)
T KOG0293|consen 377 KIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN----KLVRKYFGHKQGHFIIRSCFGGGND 452 (519)
T ss_pred ceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchh----hHHHHhhcccccceEEEeccCCCCc
Confidence 9999988654 8999999988 7778888999999999977 7888888887 333334443 2
Q ss_pred ceeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc---CCeEEEEeCCCcEEEEEccCC
Q 041206 220 TRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW---DEYLFSSSLDETIKIWLYTHT 286 (371)
Q Consensus 220 ~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~ 286 (371)
..+++| ++|+.|+||+..+++++..+.||...|++++|+ +.++|+++.||+||||.....
T Consensus 453 ~fiaSG-------SED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 453 KFIASG-------SEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ceEEec-------CCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 238899 999999999999999999999999999999999 579999999999999976543
No 74
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=9.4e-29 Score=200.68 Aligned_cols=264 Identities=14% Similarity=0.246 Sum_probs=215.5
Q ss_pred eeeEeeeCccCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEeCCC-eeEEEeec-CCEEEEecCCcEEEEEe
Q 041206 87 ATLMKLNGHKKAVTNVGLPSGS-NKLYSGSRDGRVSVWDRDSGRCVNVITNGA-EIGCLISE-GSWVFLGLPNAVKSWRV 163 (371)
Q Consensus 87 ~~~~~l~~h~~~V~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~i~~~~~ 163 (371)
..+..|.||.+.|.|++=+|.. ..++||+.||.|+|||+....+..++..+. .+..+..+ +.++.+|.|++|+.|.+
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKI 136 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeec
Confidence 3567889999999999999976 789999999999999999999999998865 67777664 66777799999999997
Q ss_pred CCCCeeEEEE---------eCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce--eEecccce
Q 041206 164 NAASVNALVV---------NND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR--WNSKEEAA 229 (371)
Q Consensus 164 ~~~~v~~~~~---------~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~--l~~~~~~~ 229 (371)
...++..+.- +.. .+++++. .|.|||.+.. .++..+.-.. .|.++.|+|-.. |+++
T Consensus 137 ~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~----~Pv~smswG~Dti~svkfNpvETsILas~---- 206 (433)
T KOG0268|consen 137 DGPPLHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRD----NPVSSMSWGADSISSVKFNPVETSILASC---- 206 (433)
T ss_pred cCCcceeeeccccccccccccccccccccCc--eeeecccccC----CccceeecCCCceeEEecCCCcchheeee----
Confidence 7664444332 211 5566554 6899999887 7888888777 999999999664 7788
Q ss_pred eeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEcC--CeEEEEeCCCcEEEEEccCCCC-----cceecceEEEEecC
Q 041206 230 VFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWD--EYLFSSSLDETIKIWLYTHTKN-----NAELSSLFGMLDAE 302 (371)
Q Consensus 230 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~ 302 (371)
..|+.|.+||+++.++++.+. -.-.-+.++|+| -.++++++|..++.||++.... ..+.+++..+-+++
T Consensus 207 ---~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp 282 (433)
T KOG0268|consen 207 ---ASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP 282 (433)
T ss_pred ---ccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC
Confidence 899999999999999887654 234557889995 4788999999999999887664 55667777777788
Q ss_pred CCCEEEEecCCCeEEEEEcCCcceeeeec--CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccc
Q 041206 303 AKPVLFSSGKDSAIRLYELPSFKLRARIF--SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 303 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
.+.-+++|+.|.+|+||..+.+.....+. .-..|.++.||-|. ++++||.|+.|++|.-...
T Consensus 283 tG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 283 TGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred CcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 77799999999999999999876554443 25689999999999 9999999999999997643
No 75
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=3.2e-27 Score=195.99 Aligned_cols=268 Identities=16% Similarity=0.210 Sum_probs=214.3
Q ss_pred ceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 041206 44 GLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVW 123 (371)
Q Consensus 44 ~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iw 123 (371)
++.++...+. ......|+.++..-+++ .+..+.+.+|+||...|+.+.|+|+...+++++.|..|+||
T Consensus 221 gi~ald~~~s----~~~ilTGG~d~~av~~d--------~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vw 288 (506)
T KOG0289|consen 221 GITALDIIPS----SSKILTGGEDKTAVLFD--------KPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVW 288 (506)
T ss_pred CeeEEeecCC----CCcceecCCCCceEEEe--------cchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEee
Confidence 4444444442 22344578888877777 46678899999999999999999999999999999999999
Q ss_pred ECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCccee
Q 041206 124 DRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQ 201 (371)
Q Consensus 124 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~ 201 (371)
............ .|..+|+.+..+|. +|++++.|++..+.|++++ ..
T Consensus 289 s~~~~s~~~~~~---------------------------~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g----~~ 337 (506)
T KOG0289|consen 289 SVPLSSEPTSSR---------------------------PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSG----SQ 337 (506)
T ss_pred ccccccCccccc---------------------------cccccceeeeeccCCcEEEEecCCceEEEEEccCC----cE
Confidence 988766444433 35667999999887 9999999999999999998 44
Q ss_pred eEEEec--Cc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCC
Q 041206 202 VASIRA--PL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLD 275 (371)
Q Consensus 202 ~~~~~~--~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d 275 (371)
+..... .. .+++.+|+|||. +.+| ..|+.++|||+.++..+..|.+|.++|..++|+ |-+|++++.|
T Consensus 338 lt~vs~~~s~v~~ts~~fHpDgLifgtg-------t~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add 410 (506)
T KOG0289|consen 338 LTVVSDETSDVEYTSAAFHPDGLIFGTG-------TPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADD 410 (506)
T ss_pred EEEEeeccccceeEEeeEcCCceEEecc-------CCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecC
Confidence 444433 33 899999999997 7889 999999999999999999999999999999999 6699999999
Q ss_pred CcEEEEEccCCCCccee-----cceEEEEecCCCCEEEEecCCCeEEEEEcC--Ccceeeeec-CCceEEEEEeCCCC-e
Q 041206 276 ETIKIWLYTHTKNNAEL-----SSLFGMLDAEAKPVLFSSGKDSAIRLYELP--SFKLRARIF-SRREVEVDQIGPAG-L 346 (371)
Q Consensus 276 g~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~-~~~~v~~~~~s~~~-~ 346 (371)
+.|++||++..+....+ ..+..+.+...+.+|+.++.+=+|++++-. ++.++.++. +.+..+++.|..+. +
T Consensus 411 ~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~ 490 (506)
T KOG0289|consen 411 GSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQY 490 (506)
T ss_pred CeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceE
Confidence 99999999887642222 134555566667789988887666666633 455666655 45688999998888 9
Q ss_pred EEeeCCCCcEEEEEc
Q 041206 347 FFPGDASGSVGVWKW 361 (371)
Q Consensus 347 l~~~~~dg~i~iw~~ 361 (371)
+++++.|..++++.+
T Consensus 491 l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 491 LASTSMDAILRLYAL 505 (506)
T ss_pred EeeccchhheEEeec
Confidence 999999999998865
No 76
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.3e-27 Score=188.47 Aligned_cols=258 Identities=18% Similarity=0.256 Sum_probs=202.0
Q ss_pred CCccceEEEEEeccCC----CCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCe
Q 041206 64 GDKCRFLHSWVHSVDG----DNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAE 139 (371)
Q Consensus 64 ~~~~~~i~~~~~~~~~----~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 139 (371)
|....+|..+..-+.. +.......++..+..|.++|++++.+ +.++||||.|-+|+|||+.+...+..+..
T Consensus 7 GtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~--- 81 (362)
T KOG0294|consen 7 GTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS--- 81 (362)
T ss_pred eeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec---
Confidence 5556667666655544 22334455688899999999999997 89999999999999999998877776654
Q ss_pred eEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC----EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEE
Q 041206 140 IGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND----LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSL 214 (371)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~----~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~ 214 (371)
|.+.|+++.|.+. .|++|+.||.|.+|+...- .++..++.|. .|+.+
T Consensus 82 ------------------------HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W----~~~~slK~H~~~Vt~l 133 (362)
T KOG0294|consen 82 ------------------------HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW----ELLKSLKAHKGQVTDL 133 (362)
T ss_pred ------------------------cccceEEEEecCCcchhheeeecCCCcEEEEEcCCe----EEeeeeccccccccee
Confidence 5567999999876 7999999999999999887 8999999999 99999
Q ss_pred EecCCcee-EecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcce
Q 041206 215 SSSNDTRW-NSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAE 291 (371)
Q Consensus 215 ~~~~~~~l-~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~ 291 (371)
+++|.++| ++. +.|+.++.||+-+|+.-+.++-.. .-+.+.|+ +.+++.++.++ |-+|.+....-...
T Consensus 134 siHPS~KLALsV-------g~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~ 204 (362)
T KOG0294|consen 134 SIHPSGKLALSV-------GGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFRE 204 (362)
T ss_pred EecCCCceEEEE-------cCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhh
Confidence 99999985 566 899999999999888766555322 22348888 67788777654 88998665432111
Q ss_pred e---cceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEEe--CCCC-eEEeeCCCCcEEEEEcccc
Q 041206 292 L---SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQI--GPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 292 ~---~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~--s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
+ ..+.++.+... ..+++|..|+.|++||.....+...+. |...|-++.+ .|++ +|++++.||.|+|||+...
T Consensus 205 i~~~~r~l~~~~l~~-~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 205 IENPKRILCATFLDG-SELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred hhccccceeeeecCC-ceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 1 11222333344 489999999999999999988887777 7889999985 3556 9999999999999999865
No 77
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=5e-27 Score=182.76 Aligned_cols=278 Identities=15% Similarity=0.154 Sum_probs=222.6
Q ss_pred EEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcC-CCCEEEEE
Q 041206 36 EREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPS-GSNKLYSG 114 (371)
Q Consensus 36 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~ 114 (371)
+..++|...+.+++++-.+.- ...++.++++.+|+..++ ....-...+||.+.|-.++|+| ....|+++
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~----lasgs~dktv~v~n~e~~------r~~~~~~~~gh~~svdql~w~~~~~d~~ata 83 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTK----LASGSFDKTVSVWNLERD------RFRKELVYRGHTDSVDQLCWDPKHPDLFATA 83 (313)
T ss_pred HHhhhhhhcceEEEEcccCce----eeecccCCceEEEEecch------hhhhhhcccCCCcchhhheeCCCCCcceEEe
Confidence 556789999999998875443 334778899999995432 2223346689999999999998 67899999
Q ss_pred eCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEec
Q 041206 115 SRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVWKG 192 (371)
Q Consensus 115 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~ 192 (371)
+.|.+|++||++.+++...+..... -.-+.|+|+ +++++..|..|.+.|.
T Consensus 84 s~dk~ir~wd~r~~k~~~~i~~~~e----------------------------ni~i~wsp~g~~~~~~~kdD~it~id~ 135 (313)
T KOG1407|consen 84 SGDKTIRIWDIRSGKCTARIETKGE----------------------------NINITWSPDGEYIAVGNKDDRITFIDA 135 (313)
T ss_pred cCCceEEEEEeccCcEEEEeeccCc----------------------------ceEEEEcCCCCEEEEecCcccEEEEEe
Confidence 9999999999999999888775322 334677777 9999999999999999
Q ss_pred cCCCCcceeeEEEecCcceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeE
Q 041206 193 TFVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYL 269 (371)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l 269 (371)
++. +.....+....+..++|+.++. ++.. ...|+|.|......++++.++.|.....|+.|+ +++|
T Consensus 136 r~~----~~~~~~~~~~e~ne~~w~~~nd~Fflt-------~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gryf 204 (313)
T KOG1407|consen 136 RTY----KIVNEEQFKFEVNEISWNNSNDLFFLT-------NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYF 204 (313)
T ss_pred ccc----ceeehhcccceeeeeeecCCCCEEEEe-------cCCceEEEEeccccccccccccCCcceEEEEECCCCceE
Confidence 987 5665555544888889987775 4444 556999999999999999999999999999999 7899
Q ss_pred EEEeCCCcEEEEEccCCCCccee----cceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC
Q 041206 270 FSSSLDETIKIWLYTHTKNNAEL----SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG 345 (371)
Q Consensus 270 ~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~ 345 (371)
++|+.|..+.+||+...-....+ -.+..+.++.++++|+++++|..|-|=++++|..+.++.+.++...++|+|..
T Consensus 205 A~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 205 ATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKR 284 (313)
T ss_pred eeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCC
Confidence 99999999999997654432222 23445556666679999999999999999999999999999999999999999
Q ss_pred -eEEeeCCC---------CcEEEEEcc
Q 041206 346 -LFFPGDAS---------GSVGVWKWL 362 (371)
Q Consensus 346 -~l~~~~~d---------g~i~iw~~~ 362 (371)
+||-++.| |.+++|-+.
T Consensus 285 ~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 285 PLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred ceeeEEecCCCCccccccceeEEecCC
Confidence 77766543 567776554
No 78
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.4e-27 Score=197.93 Aligned_cols=270 Identities=16% Similarity=0.199 Sum_probs=213.2
Q ss_pred eccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcE
Q 041206 41 FGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRV 120 (371)
Q Consensus 41 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v 120 (371)
-.+.|.+++|+|...... .++++ .-+.+++ .......+++.-..+.|+++.|..||++||.|...|.|
T Consensus 25 e~~~vssl~fsp~~P~d~--aVt~S--~rvqly~--------~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V 92 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDF--AVTSS--VRVQLYS--------SVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHV 92 (487)
T ss_pred ccCcceeEecCCCCCCce--EEecc--cEEEEEe--------cchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcE
Confidence 346788888888655321 11122 2345555 34455666677778899999999999999999999999
Q ss_pred EEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC---EEEEEeCCCeEEEEeccCCCC
Q 041206 121 SVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND---LLFAGSEGGVISVWKGTFVAN 197 (371)
Q Consensus 121 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~ 197 (371)
+|+|..+...++.+.. |+.++..+.|+|+ .+++|+.|+.+++||+.+.
T Consensus 93 ~vfD~k~r~iLR~~~a---------------------------h~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a-- 143 (487)
T KOG0310|consen 93 KVFDMKSRVILRQLYA---------------------------HQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA-- 143 (487)
T ss_pred EEeccccHHHHHHHhh---------------------------ccCceeEEEecccCCeEEEecCCCceEEEEEcCCc--
Confidence 9999665444444443 5667899999887 8999999999999999998
Q ss_pred cceeeEEEecCc-ceEEEEecCCce--eEecccceeeeeCCCeEEEEECCCc-eEEEEeecCCCcEEEEEEc--CCeEEE
Q 041206 198 PFKQVASIRAPL-WFCSLSSSNDTR--WNSKEEAAVFEFCGHTTRTWNLDNL-ECVQTLKGHSDTVTSLLFW--DEYLFS 271 (371)
Q Consensus 198 ~~~~~~~~~~~~-~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~s 271 (371)
.....+.+|. .|.|.+++|... +++| +.||.|++||++.. ..+.++. |..+|.++.+- +..+++
T Consensus 144 --~v~~~l~~htDYVR~g~~~~~~~hivvtG-------sYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~ias 213 (487)
T KOG0310|consen 144 --YVQAELSGHTDYVRCGDISPANDHIVVTG-------SYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIAS 213 (487)
T ss_pred --EEEEEecCCcceeEeeccccCCCeEEEec-------CCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEE
Confidence 5566889999 999999999653 8999 99999999999987 6666776 89999999997 456666
Q ss_pred EeCCCcEEEEEccCCCC-----cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-
Q 041206 272 SSLDETIKIWLYTHTKN-----NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG- 345 (371)
Q Consensus 272 ~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~- 345 (371)
++ ...+++||+..+.. ..+...++++....++..|++++-|+.|++||+.+.+.+..+.-.++|.+++.+|++
T Consensus 214 Ag-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~ 292 (487)
T KOG0310|consen 214 AG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQ 292 (487)
T ss_pred cC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCc
Confidence 65 45799999885542 223345555555556679999999999999999999999999899999999999999
Q ss_pred eEEeeCCCCcEEEEEcc
Q 041206 346 LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 346 ~l~~~~~dg~i~iw~~~ 362 (371)
.++.|..||.+.+=+..
T Consensus 293 t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 293 TVVIGMSNGLVSIRRRE 309 (487)
T ss_pred eEEEecccceeeeehhh
Confidence 99999999998776443
No 79
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.1e-27 Score=190.78 Aligned_cols=286 Identities=14% Similarity=0.168 Sum_probs=221.1
Q ss_pred EEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccC------C----CCccCCceeeEeeeCccCCeEEEEEc
Q 041206 36 EREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVD------G----DNTTNSLATLMKLNGHKKAVTNVGLP 105 (371)
Q Consensus 36 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~----~~~~~~~~~~~~l~~h~~~V~~~~~~ 105 (371)
..+..|.....+.+|++.+.+++ .|+.|..|++.+...- . ......-..+++|-.|.+.|+++.|+
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvA----TGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVA----TGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH 181 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEE----ccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence 45778999999999999888655 5788889999885521 0 11122235789999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeC
Q 041206 106 SGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSE 183 (371)
Q Consensus 106 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~ 183 (371)
|...+|++|+.|++|++||+..-...+.++.-. ...+|.++.|+|. ++++|+.
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-------------------------d~~~vrsiSfHPsGefllvgTd 236 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-------------------------DTEPVRSISFHPSGEFLLVGTD 236 (430)
T ss_pred chhheEEeccCCCeEEEEecccHHHHHHHHHhh-------------------------ccceeeeEeecCCCceEEEecC
Confidence 999999999999999999987654333222100 2235899999998 9999999
Q ss_pred CCeEEEEeccCCCCcceeeEE---EecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEee-cCCC
Q 041206 184 GGVISVWKGTFVANPFKQVAS---IRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLK-GHSD 257 (371)
Q Consensus 184 dg~v~iwd~~~~~~~~~~~~~---~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~-~~~~ 257 (371)
...+++||+++. ++... -..|. .|+++.+++.++ .+++ +.||.|++||--+++++.++. .|.+
T Consensus 237 Hp~~rlYdv~T~----QcfvsanPd~qht~ai~~V~Ys~t~~lYvTa-------SkDG~IklwDGVS~rCv~t~~~AH~g 305 (430)
T KOG0640|consen 237 HPTLRLYDVNTY----QCFVSANPDDQHTGAITQVRYSSTGSLYVTA-------SKDGAIKLWDGVSNRCVRTIGNAHGG 305 (430)
T ss_pred CCceeEEeccce----eEeeecCcccccccceeEEEecCCccEEEEe-------ccCCcEEeeccccHHHHHHHHhhcCC
Confidence 999999999987 44432 34566 999999999997 6888 999999999999999998875 4544
Q ss_pred -cEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCccee----------cceEEEEecCCCCEEEEe-cCCCeEEEEEcCC
Q 041206 258 -TVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAEL----------SSLFGMLDAEAKPVLFSS-GKDSAIRLYELPS 323 (371)
Q Consensus 258 -~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~-~~d~~i~iwd~~~ 323 (371)
.|.+..|. ++|+++.+.|..+++|.+.+++..... .....++..... +++.- -..+.+.-||.++
T Consensus 306 sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEd-yVl~pDEas~slcsWdaRt 384 (430)
T KOG0640|consen 306 SEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTED-YVLFPDEASNSLCSWDART 384 (430)
T ss_pred ceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccc-eEEccccccCceeeccccc
Confidence 78888897 789999999999999998887742211 111223444444 54443 3457799999998
Q ss_pred cceeee--ecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEcc
Q 041206 324 FKLRAR--IFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 324 ~~~~~~--~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~ 362 (371)
...+.. +.|.+.++.+.-||.+ -+++|+.|-.+++|--+
T Consensus 385 adr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 385 ADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 765544 4489999999999999 99999999999999643
No 80
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.1e-26 Score=204.08 Aligned_cols=186 Identities=19% Similarity=0.258 Sum_probs=146.2
Q ss_pred EEEEEeCCCeEEEEeccCCCCcc---------------------------------eeeEEEecCc-ceEEEEecCCce-
Q 041206 177 LLFAGSEGGVISVWKGTFVANPF---------------------------------KQVASIRAPL-WFCSLSSSNDTR- 221 (371)
Q Consensus 177 ~l~~~~~dg~v~iwd~~~~~~~~---------------------------------~~~~~~~~~~-~v~~~~~~~~~~- 221 (371)
.+.+++.|++|++||+....... +.....-... .+++++++|+++
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 68899999999999987632110 0011111223 789999999997
Q ss_pred eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc-----CCeEEEEeCCCcEEEEEccCCC--------C
Q 041206 222 WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW-----DEYLFSSSLDETIKIWLYTHTK--------N 288 (371)
Q Consensus 222 l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~--------~ 288 (371)
|++| ...|+++|||+...+....+..|..+|.|+.|+ .++|++++.|.-|.+||+...- +
T Consensus 474 LAsG-------Dr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~H 546 (1080)
T KOG1408|consen 474 LASG-------DRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGH 546 (1080)
T ss_pred eccc-------CccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccc
Confidence 9999 999999999999998888999999999999999 3689999999999999932111 0
Q ss_pred --------------------------------------------cc--eecceEEEEecCCCCEEEEecCCCeEEEEEcC
Q 041206 289 --------------------------------------------NA--ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELP 322 (371)
Q Consensus 289 --------------------------------------------~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 322 (371)
.. .-..+..+...+...++++++.|..|+|||+.
T Consensus 547 SssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~ 626 (1080)
T KOG1408|consen 547 SSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIE 626 (1080)
T ss_pred ccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecc
Confidence 00 00123334444556699999999999999999
Q ss_pred CcceeeeecC----CceEEEEEeCCCC-eEEeeCCCCcEEEEEccccceecc
Q 041206 323 SFKLRARIFS----RREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQKM 369 (371)
Q Consensus 323 ~~~~~~~~~~----~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~~~ 369 (371)
++++...+++ .+....+...|.| +|++.+.|.++.++|+.++++..+
T Consensus 627 sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~ 678 (1080)
T KOG1408|consen 627 SGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ 678 (1080)
T ss_pred ccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence 9999999883 5778889999999 999999999999999999887543
No 81
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.2e-27 Score=188.95 Aligned_cols=249 Identities=16% Similarity=0.274 Sum_probs=205.8
Q ss_pred CceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeC
Q 041206 85 SLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVN 164 (371)
Q Consensus 85 ~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 164 (371)
...+++.|.||.+.|..++.....+.+.+++.|.+.+||.+++|.|+.++.. |
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~G---------------------------H 189 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTG---------------------------H 189 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecc---------------------------c
Confidence 4678899999999999999988888999999999999999999999998876 6
Q ss_pred CCCeeEEEEeCC--EEEEEeCCCeEEEEecc----CCC--------------------------------CcceeeEEEe
Q 041206 165 AASVNALVVNND--LLFAGSEGGVISVWKGT----FVA--------------------------------NPFKQVASIR 206 (371)
Q Consensus 165 ~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~----~~~--------------------------------~~~~~~~~~~ 206 (371)
.+.|+++.|++. ++++++.|++-.||... .+. ....++..+.
T Consensus 190 ~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt 269 (481)
T KOG0300|consen 190 TGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT 269 (481)
T ss_pred ccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee
Confidence 677999999887 88889999999998621 111 0013566677
Q ss_pred cCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEE
Q 041206 207 APL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWL 282 (371)
Q Consensus 207 ~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd 282 (371)
+|. .|.+..|-..++ ++++ +.|.+..+||+++++++..+.+|....+-++-+ .+++++++.|.+.++||
T Consensus 270 gH~~vV~a~dWL~gg~Q~vTa-------SWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWD 342 (481)
T KOG0300|consen 270 GHRAVVSACDWLAGGQQMVTA-------SWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWD 342 (481)
T ss_pred ccccceEehhhhcCcceeeee-------eccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEecc
Confidence 777 777777777664 7777 999999999999999999999999999988887 45888999999999999
Q ss_pred ccCCCC-----cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcc-eeeeecCCceEEEEEeCCCC-eEEeeCCCCc
Q 041206 283 YTHTKN-----NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFK-LRARIFSRREVEVDQIGPAG-LFFPGDASGS 355 (371)
Q Consensus 283 ~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~ 355 (371)
++..-+ .++...++...+..+. .+++|+.|.+|++||+++++ ++..+....+++.++++..+ .|+.--.+..
T Consensus 343 FReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRq 421 (481)
T KOG0300|consen 343 FREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQ 421 (481)
T ss_pred chhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCce
Confidence 884332 3334455555555555 69999999999999999976 67777789999999999988 8888888999
Q ss_pred EEEEEccccceec
Q 041206 356 VGVWKWLLAEQQK 368 (371)
Q Consensus 356 i~iw~~~~~~~~~ 368 (371)
|++||++..++.+
T Consensus 422 vRlfDlnG~RlaR 434 (481)
T KOG0300|consen 422 VRLFDLNGNRLAR 434 (481)
T ss_pred EEEEecCCCcccc
Confidence 9999998776554
No 82
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=3.4e-26 Score=178.77 Aligned_cols=228 Identities=17% Similarity=0.233 Sum_probs=195.5
Q ss_pred eeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeE
Q 041206 91 KLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNA 170 (371)
Q Consensus 91 ~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~ 170 (371)
.|+||+.+++.+.++.+|.+|.||+.|.++.+|-..+|+.+.++.. |++.|.|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~G---------------------------HtGavW~ 57 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDG---------------------------HTGAVWC 57 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecC---------------------------CCceEEE
Confidence 5789999999999999999999999999999999889999988775 7778999
Q ss_pred EEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCcee--EecccceeeeeCCCeEEEEECC--
Q 041206 171 LVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTRW--NSKEEAAVFEFCGHTTRTWNLD-- 244 (371)
Q Consensus 171 ~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l--~~~~~~~~~~~~dg~i~iwd~~-- 244 (371)
+..+.+ .+++|+.|.++++||++++ +.+..++...+|..+.|+++|.+ ++..+.+ +..+.|.++|++
T Consensus 58 ~Did~~s~~liTGSAD~t~kLWDv~tG----k~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~m---g~~~~v~~fdi~~~ 130 (327)
T KOG0643|consen 58 CDIDWDSKHLITGSADQTAKLWDVETG----KQLATWKTNSPVKRVDFSFGGNLILASTDKQM---GYTCFVSVFDIRDD 130 (327)
T ss_pred EEecCCcceeeeccccceeEEEEcCCC----cEEEEeecCCeeEEEeeccCCcEEEEEehhhc---CcceEEEEEEccCC
Confidence 988876 9999999999999999999 88888888889999999999873 3332222 455689999998
Q ss_pred -----CceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC-----cceecceEEEEecCCCCEEEEecC
Q 041206 245 -----NLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN-----NAELSSLFGMLDAEAKPVLFSSGK 312 (371)
Q Consensus 245 -----~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~ 312 (371)
..++...+..+...++.+-|. +++|++|..||.|..||++++.. ..+...+..+...++..++++++.
T Consensus 131 ~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~ 210 (327)
T KOG0643|consen 131 SSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK 210 (327)
T ss_pred hhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc
Confidence 456678888888999999998 89999999999999999988642 222346666677777779999999
Q ss_pred CCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCC
Q 041206 313 DSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDA 352 (371)
Q Consensus 313 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~ 352 (371)
|.+-++||+.+.+.+..+....||++.+++|.. .++.|+.
T Consensus 211 Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 211 DTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred CccceeeeccceeeEEEeeecccccceecccccceEEecCC
Confidence 999999999999999999999999999999987 5555543
No 83
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=7e-26 Score=204.22 Aligned_cols=251 Identities=15% Similarity=0.149 Sum_probs=184.2
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEe
Q 041206 95 HKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVN 174 (371)
Q Consensus 95 h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~ 174 (371)
|-..|.....++++..+++++.+.....|+...+..+..+...+.. .....++.-|++.|.+++|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~--------------~~~~~~l~GH~~~V~~v~fs 84 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKL--------------ASNPPILLGQEGPIIDVAFN 84 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccC--------------CCCCceEeCCCCCEEEEEEc
Confidence 3445667777888888899999999999987655432221111100 01112344578899999999
Q ss_pred C-C--EEEEEeCCCeEEEEeccCCCC---cceeeEEEecCc-ceEEEEecCCc--eeEecccceeeeeCCCeEEEEECCC
Q 041206 175 N-D--LLFAGSEGGVISVWKGTFVAN---PFKQVASIRAPL-WFCSLSSSNDT--RWNSKEEAAVFEFCGHTTRTWNLDN 245 (371)
Q Consensus 175 ~-~--~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~-~v~~~~~~~~~--~l~~~~~~~~~~~~dg~i~iwd~~~ 245 (371)
| + +|++|+.|+.|++||+..... ...++..+.+|. .|.+++|+|++ .|+++ +.|+.|++||+++
T Consensus 85 P~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSg-------s~DgtVrIWDl~t 157 (493)
T PTZ00421 85 PFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASA-------GADMVVNVWDVER 157 (493)
T ss_pred CCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEE-------eCCCEEEEEECCC
Confidence 8 4 899999999999999976421 124567888999 99999999975 48899 9999999999999
Q ss_pred ceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCccee----c--ceEEEEecCCCCEEEEec----CC
Q 041206 246 LECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAEL----S--SLFGMLDAEAKPVLFSSG----KD 313 (371)
Q Consensus 246 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~----~--~~~~~~~~~~~~~l~~~~----~d 313 (371)
++.+..+.+|...|.+++|+ +++|++++.|++|++||++..+....+ . .....+.++.+ .+++++ .|
T Consensus 158 g~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~-~ivt~G~s~s~D 236 (493)
T PTZ00421 158 GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKD-LIITLGCSKSQQ 236 (493)
T ss_pred CeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCC-eEEEEecCCCCC
Confidence 99999999999999999998 679999999999999999876532111 1 11223444444 555443 47
Q ss_pred CeEEEEEcCCcceeeee-c--CCceEEEEEeCCCC-eEEeeC-CCCcEEEEEcccccee
Q 041206 314 SAIRLYELPSFKLRARI-F--SRREVEVDQIGPAG-LFFPGD-ASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 314 ~~i~iwd~~~~~~~~~~-~--~~~~v~~~~~s~~~-~l~~~~-~dg~i~iw~~~~~~~~ 367 (371)
+.|++||+++....... . ....+....|++++ .|++++ .|+.|++||+.+++..
T Consensus 237 r~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 237 RQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred CeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence 99999999876533322 2 23456667899999 777766 5999999999877643
No 84
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=9.5e-27 Score=208.25 Aligned_cols=247 Identities=17% Similarity=0.215 Sum_probs=193.9
Q ss_pred ceeEEEEE-eeccceeeeeeeecceeeccceeeCCccceEEEEEeccC-------C------------------------
Q 041206 32 GRAEEREE-MFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVD-------G------------------------ 79 (371)
Q Consensus 32 ~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------~------------------------ 79 (371)
....+.+. .|.+.|.++.|++++.+++ .++.|+.|++|....+ +
T Consensus 256 l~~~Qe~~~ah~gaIw~mKFS~DGKyLA----saGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~ 331 (712)
T KOG0283|consen 256 LTVVQEISNAHKGAIWAMKFSHDGKYLA----SAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEK 331 (712)
T ss_pred eEEeeccccccCCcEEEEEeCCCCceee----ecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccc
Confidence 33445566 8888888888888877655 4688888888886540 0
Q ss_pred ---------------C------CccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC
Q 041206 80 ---------------D------NTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGA 138 (371)
Q Consensus 80 ---------------~------~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 138 (371)
. .-.-..++++.|+||.+.|..+.||.+ ++|+|+|.|.+||+|++...+|+..|.+..
T Consensus 332 ~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~Hnd 410 (712)
T KOG0283|consen 332 ISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHND 410 (712)
T ss_pred ccccccccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCC
Confidence 0 001124678899999999999999976 599999999999999999999999999655
Q ss_pred eeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEE
Q 041206 139 EIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLS 215 (371)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 215 (371)
- |+|++|+|. ++++|+-||.|+||++... +...-...+.-|++++
T Consensus 411 f----------------------------VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~----~Vv~W~Dl~~lITAvc 458 (712)
T KOG0283|consen 411 F----------------------------VTCVAFNPVDDRYFISGSLDGKVRLWSISDK----KVVDWNDLRDLITAVC 458 (712)
T ss_pred e----------------------------eEEEEecccCCCcEeecccccceEEeecCcC----eeEeehhhhhhheeEE
Confidence 4 899999987 9999999999999999987 5555555555999999
Q ss_pred ecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeec--C------CCcEEEEEEc---CCeEEEEeCCCcEEEEEc
Q 041206 216 SSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKG--H------SDTVTSLLFW---DEYLFSSSLDETIKIWLY 283 (371)
Q Consensus 216 ~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~--~------~~~v~~~~~~---~~~l~s~~~dg~i~iwd~ 283 (371)
+.|||+ .+.| +.+|.+++|+....+....++- | ...|+.+.|. ++.+++.+.|..|||||.
T Consensus 459 y~PdGk~avIG-------t~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 459 YSPDGKGAVIG-------TFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred eccCCceEEEE-------EeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEec
Confidence 999998 7888 9999999999998887655431 1 2279999998 456888899999999998
Q ss_pred cCCCC-------cceecceEEEEecCCCCEEEEecCCCeEEEEEcCC
Q 041206 284 THTKN-------NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPS 323 (371)
Q Consensus 284 ~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 323 (371)
+.... ...-+.+.+.+.. ++++|+++++|..|++|+...
T Consensus 532 ~~~~lv~KfKG~~n~~SQ~~Asfs~-Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 532 RDKDLVHKFKGFRNTSSQISASFSS-DGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred cchhhhhhhcccccCCcceeeeEcc-CCCEEEEeecCceEEEEeCCC
Confidence 44332 1222345555666 555999999999999999743
No 85
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-25 Score=179.34 Aligned_cols=241 Identities=15% Similarity=0.163 Sum_probs=192.2
Q ss_pred ceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCC
Q 041206 86 LATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNA 165 (371)
Q Consensus 86 ~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 165 (371)
+++.+.++.-...|+++.|+++|.+|++++.|.+++|||..++++++++.....
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skky-------------------------- 57 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKY-------------------------- 57 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccc--------------------------
Confidence 455667777788999999999999999999999999999999999999886432
Q ss_pred CCeeEEEEeC--CEEEEEeC--CCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc-eeEecccceeeeeCCCeEE
Q 041206 166 ASVNALVVNN--DLLFAGSE--GGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT-RWNSKEEAAVFEFCGHTTR 239 (371)
Q Consensus 166 ~~v~~~~~~~--~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~l~~~~~~~~~~~~dg~i~ 239 (371)
.+..++|.. +.++.++. |.+|+..++.+. +.++.+.+|. .|++++.+|-+ .++++ +.|++|+
T Consensus 58 -G~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN----kylRYF~GH~~~V~sL~~sP~~d~FlS~-------S~D~tvr 125 (311)
T KOG1446|consen 58 -GVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN----KYLRYFPGHKKRVNSLSVSPKDDTFLSS-------SLDKTVR 125 (311)
T ss_pred -cccEEEEecCCceEEEccCCCCCceEEEEeecC----ceEEEcCCCCceEEEEEecCCCCeEEec-------ccCCeEE
Confidence 244455543 35555555 889999999999 9999999999 99999999966 59999 9999999
Q ss_pred EEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC---------cceecceEEEEecCCCCEEE
Q 041206 240 TWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN---------NAELSSLFGMLDAEAKPVLF 308 (371)
Q Consensus 240 iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~l~ 308 (371)
+||++..++...+.....+| .+|+ |-++|++.....|++||++.-.. .........+.+++++++++
T Consensus 126 LWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iL 203 (311)
T KOG1446|consen 126 LWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSIL 203 (311)
T ss_pred eeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEE
Confidence 99999888877666544444 4566 56777777777999999887542 11222445556667777888
Q ss_pred EecCCCeEEEEEcCCcceeeeecC----CceEEEEEeCCCC-eEEeeCCCCcEEEEEccccce
Q 041206 309 SSGKDSAIRLYELPSFKLRARIFS----RREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 309 ~~~~d~~i~iwd~~~~~~~~~~~~----~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~ 366 (371)
.+...+.+++.|.-+|..+..+.. ..--....|+||+ ++++|+.||+|++|+++++..
T Consensus 204 lsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 204 LSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKK 266 (311)
T ss_pred EEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcE
Confidence 899999999999999998877763 1222577899999 999999999999999987653
No 86
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.8e-26 Score=183.55 Aligned_cols=257 Identities=18% Similarity=0.170 Sum_probs=185.7
Q ss_pred eEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-----EE-EEeCCCe-eEEEeecCCEEE-E-ecCCcEE
Q 041206 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRC-----VN-VITNGAE-IGCLISEGSWVF-L-GLPNAVK 159 (371)
Q Consensus 89 ~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-----~~-~~~~~~~-~~~~~~~~~~~~-~-~~~~~i~ 159 (371)
+..|+||.+.|++++|+.||++|||++.|++|++|+++.... ++ .+....+ ...+.++-+-++ . ...+.++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 568899999999999999999999999999999999986432 11 1112212 223333433222 2 3456666
Q ss_pred EEEeCCC-----------------------CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEE
Q 041206 160 SWRVNAA-----------------------SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCS 213 (371)
Q Consensus 160 ~~~~~~~-----------------------~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~ 213 (371)
+|.+... .+..+-.-.+ ++++++.|..|.+|+++ + +.+..+...+ .-..
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-G----q~L~~idtnq~~n~~ 233 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-G----QLLQSIDTNQSSNYD 233 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-C----ceeeeeccccccccc
Confidence 6665322 3333333333 99999999999999999 5 6888888877 8888
Q ss_pred EEecCCce-eEecccceeeeeCCCeEEEEECC---Cc-----eEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEE
Q 041206 214 LSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLD---NL-----ECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWL 282 (371)
Q Consensus 214 ~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~---~~-----~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd 282 (371)
.+++|+|+ ++++ +.--.|++|.+- .| ..+..+++|...|..++|+ ...+++.|.||++++||
T Consensus 234 aavSP~GRFia~~-------gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 234 AAVSPDGRFIAVS-------GFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWD 306 (420)
T ss_pred eeeCCCCcEEEEe-------cCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEee
Confidence 99999998 6777 788889999873 22 2356789999999999999 57999999999999999
Q ss_pred ccCCCC----------------cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec--CCceEEEEEeCCC
Q 041206 283 YTHTKN----------------NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF--SRREVEVDQIGPA 344 (371)
Q Consensus 283 ~~~~~~----------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~ 344 (371)
..-.-+ ...-..+....+| .+..|+. +....+++|..++++....+. |...|.+++|+++
T Consensus 307 tdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP-~g~~lA~-s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~ 384 (420)
T KOG2096|consen 307 TDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP-SGDSLAV-SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSD 384 (420)
T ss_pred ccceEecCCCchHhhcCCcchhhcCCCceEEEeCC-CCcEEEe-ecCCceEEEEcccCccchhHHHhhcCceeeEEecCC
Confidence 432111 1111122223444 4435544 445679999999988776665 7889999999999
Q ss_pred C-eEEeeCCCCcEEEEE
Q 041206 345 G-LFFPGDASGSVGVWK 360 (371)
Q Consensus 345 ~-~l~~~~~dg~i~iw~ 360 (371)
| ++++++ |..++++.
T Consensus 385 g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 385 GKYIATCG-DRYVRVIR 400 (420)
T ss_pred CcEEeeec-ceeeeeec
Confidence 9 777775 77888876
No 87
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.5e-25 Score=178.15 Aligned_cols=250 Identities=18% Similarity=0.244 Sum_probs=203.8
Q ss_pred cccCCCCceeeccCcc-------cccceeEEEEEeeccceeeeeeeecce-eeccceeeCCccceEEEEEeccCCCCccC
Q 041206 13 HKHSEGGETMMSDDDD-------LMKGRAEEREEMFGFGLAAMAIRVCNN-WISDSCVYGDKCRFLHSWVHSVDGDNTTN 84 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d-------~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (371)
.-|+++|+.|+++.+| ..+++.+..+..+..++..+.|..... .+.++ ...+..|+..+ ..
T Consensus 20 l~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sS---tk~d~tIryLs--------l~ 88 (311)
T KOG1446|consen 20 LDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSS---TKEDDTIRYLS--------LH 88 (311)
T ss_pred EEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEcc---CCCCCceEEEE--------ee
Confidence 4599999999986655 457888888888888888887654222 22222 23355666655 34
Q ss_pred CceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-CeeEEEeecCCEEEEecCC-cEEEEE
Q 041206 85 SLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNG-AEIGCLISEGSWVFLGLPN-AVKSWR 162 (371)
Q Consensus 85 ~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~i~~~~ 162 (371)
+.+.++.|.||...|++++.+|-+..++|++.|++|++||++..++...+... .++.++.+.|-+++++.++ .|++||
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD 168 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYD 168 (311)
T ss_pred cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEE
Confidence 56889999999999999999998899999999999999999999988888775 4566666777777776654 999999
Q ss_pred eCCC----------------CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc----ceEEEEecCCc
Q 041206 163 VNAA----------------SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL----WFCSLSSSNDT 220 (371)
Q Consensus 163 ~~~~----------------~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~ 220 (371)
++.- +.+.+.|+|+ .++.++..+.+.+.|.-++ ....++..+. --.+.+|.||+
T Consensus 169 ~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G----~~~~tfs~~~~~~~~~~~a~ftPds 244 (311)
T KOG1446|consen 169 LRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG----TVKSTFSGYPNAGNLPLSATFTPDS 244 (311)
T ss_pred ecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC----cEeeeEeeccCCCCcceeEEECCCC
Confidence 9754 6788999999 8899999999999999998 6777777665 22578899999
Q ss_pred e-eEecccceeeeeCCCeEEEEECCCceEEEEeec-CCCcEEEEEEcCCeEEEEeCCCcEEEEEcc
Q 041206 221 R-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKG-HSDTVTSLLFWDEYLFSSSLDETIKIWLYT 284 (371)
Q Consensus 221 ~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~ 284 (371)
+ +++| +.||+|.+|+++++..+..+++ +..++.++.|+|.+..-.+.+..+.+|=..
T Consensus 245 ~Fvl~g-------s~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 245 KFVLSG-------SDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPD 303 (311)
T ss_pred cEEEEe-------cCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEecc
Confidence 8 7888 8999999999999999999998 688999999999988888888899999654
No 88
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=7.5e-26 Score=180.31 Aligned_cols=233 Identities=14% Similarity=0.128 Sum_probs=185.0
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEe
Q 041206 95 HKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVN 174 (371)
Q Consensus 95 h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~ 174 (371)
-.+.|.++.|+|.++.|+.++.||++++||+........+.+.. ++.+++|.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~----------------------------plL~c~F~ 63 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGA----------------------------PLLDCAFA 63 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCC----------------------------ceeeeecc
Confidence 36789999999999999999999999999999988777777544 48888998
Q ss_pred CC-EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCC-ceeEecccceeeeeCCCeEEEEECCCceEEEE
Q 041206 175 ND-LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSND-TRWNSKEEAAVFEFCGHTTRTWNLDNLECVQT 251 (371)
Q Consensus 175 ~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~-~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~ 251 (371)
++ .+++|+.||.|+.+|+.++ ....+..|. ++.|+..++. +.+++| +.|++|++||.+.......
T Consensus 64 d~~~~~~G~~dg~vr~~Dln~~-----~~~~igth~~~i~ci~~~~~~~~vIsg-------sWD~~ik~wD~R~~~~~~~ 131 (323)
T KOG1036|consen 64 DESTIVTGGLDGQVRRYDLNTG-----NEDQIGTHDEGIRCIEYSYEVGCVISG-------SWDKTIKFWDPRNKVVVGT 131 (323)
T ss_pred CCceEEEeccCceEEEEEecCC-----cceeeccCCCceEEEEeeccCCeEEEc-------ccCccEEEEeccccccccc
Confidence 87 9999999999999999997 345667777 9999999974 569999 9999999999998666655
Q ss_pred eecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCCcc------eecceEEEEecCCCCEEEEecCCCeEEEEEcCCc-
Q 041206 252 LKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKNNA------ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSF- 324 (371)
Q Consensus 252 ~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~- 324 (371)
+. ....|.++...++.|+.|+.|..+.+||+++..... .-..+.++..-+++.=+++++-||.|.+=.++..
T Consensus 132 ~d-~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~ 210 (323)
T KOG1036|consen 132 FD-QGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSE 210 (323)
T ss_pred cc-cCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCch
Confidence 55 344899999999999999999999999998766422 1112233333333335788899999887655543
Q ss_pred ---ceeeeec-C---------CceEEEEEeCCCC-eEEeeCCCCcEEEEEccccceec
Q 041206 325 ---KLRARIF-S---------RREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 325 ---~~~~~~~-~---------~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
+....+. | --+|++++|+|-. .|+||+.||.|.+||+.+.+.++
T Consensus 211 ~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~ 268 (323)
T KOG1036|consen 211 EAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLK 268 (323)
T ss_pred HHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhh
Confidence 2223332 2 2489999999987 99999999999999998876554
No 89
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.2e-26 Score=193.94 Aligned_cols=254 Identities=21% Similarity=0.309 Sum_probs=203.3
Q ss_pred eEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEE-EEeCCCC
Q 041206 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKS-WRVNAAS 167 (371)
Q Consensus 89 ~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~ 167 (371)
+..+..|.-+|++++++|+.++.++++.||+|.=|++.+++...-+-....+... .....+. +..|...
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~----------~~~~~k~~r~~h~ke 204 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKS----------HGNPLKESRKGHVKE 204 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhh----------ccCCCCcccccccce
Confidence 6788899999999999999999999999999999999999865322211111000 0000000 0146678
Q ss_pred eeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc-eeEecccceeeeeCCCeEEEEEC
Q 041206 168 VNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT-RWNSKEEAAVFEFCGHTTRTWNL 243 (371)
Q Consensus 168 v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~l~~~~~~~~~~~~dg~i~iwd~ 243 (371)
+.+++.+++ +|++|+.|..|.||+..+. ++++.+.+|. .|.+++|-... +++++ +.|+++++|++
T Consensus 205 il~~avS~Dgkylatgg~d~~v~Iw~~~t~----ehv~~~~ghr~~V~~L~fr~gt~~lys~-------s~Drsvkvw~~ 273 (479)
T KOG0299|consen 205 ILTLAVSSDGKYLATGGRDRHVQIWDCDTL----EHVKVFKGHRGAVSSLAFRKGTSELYSA-------SADRSVKVWSI 273 (479)
T ss_pred eEEEEEcCCCcEEEecCCCceEEEecCccc----chhhcccccccceeeeeeecCccceeee-------ecCCceEEEeh
Confidence 999999998 9999999999999999999 8899999999 99999998854 49999 99999999999
Q ss_pred CCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC---cceecceEEEEecCCCCEEEEecCCCeEEE
Q 041206 244 DNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN---NAELSSLFGMLDAEAKPVLFSSGKDSAIRL 318 (371)
Q Consensus 244 ~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i 318 (371)
.....+.++.+|++.|.++.-. +..+-+|+.|+++++|++..... .+.-..+.++.+-++. .+++|+.+|.|.+
T Consensus 274 ~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~-HfvsGSdnG~IaL 352 (479)
T KOG0299|consen 274 DQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDE-HFVSGSDNGSIAL 352 (479)
T ss_pred hHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEeccc-ceeeccCCceEEE
Confidence 9999999999999999999877 45555566999999999843322 1112244444555555 7999999999999
Q ss_pred EEcCCcceeeeec--C---C--------ceEEEEEeCCCC-eEEeeCCCCcEEEEEcccc
Q 041206 319 YELPSFKLRARIF--S---R--------REVEVDQIGPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 319 wd~~~~~~~~~~~--~---~--------~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
|++...+++.... | . ..|++++..|.. ++++|+.+|.|++|.+.++
T Consensus 353 Ws~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 353 WSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 9999998887665 2 1 278999999998 9999999999999999876
No 90
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=6.5e-26 Score=208.03 Aligned_cols=297 Identities=16% Similarity=0.188 Sum_probs=232.0
Q ss_pred ccCCCCceeeccC--cc-----------c--------ccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEE
Q 041206 14 KHSEGGETMMSDD--DD-----------L--------MKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHS 72 (371)
Q Consensus 14 ~~sp~g~~l~~~~--~d-----------~--------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~ 72 (371)
..+|||..+|+++ .| + .-.+.+.....|...|.|+-|++.+.+++ .|+.|+.+.+
T Consensus 20 dv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lA----sGSDD~~v~i 95 (942)
T KOG0973|consen 20 DVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLA----SGSDDRLVMI 95 (942)
T ss_pred EecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEe----eccCcceEEE
Confidence 4689999999999 43 0 12445667789999999999999777544 4788999999
Q ss_pred EEecc----------CCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEE
Q 041206 73 WVHSV----------DGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGC 142 (371)
Q Consensus 73 ~~~~~----------~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 142 (371)
|...+ .+....+.++.+..|++|.+.|..++|+|++.+|++++.|++|.|||..+.+++.++..
T Consensus 96 W~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~------ 169 (942)
T KOG0973|consen 96 WERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG------ 169 (942)
T ss_pred eeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeec------
Confidence 99773 12345677889999999999999999999999999999999999999999988887775
Q ss_pred EeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecC-------cceEE
Q 041206 143 LISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAP-------LWFCS 213 (371)
Q Consensus 143 ~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-------~~v~~ 213 (371)
|.+.|..+.|+|- ++++-+.|++|+||+..+- ...+.+..+ ..+..
T Consensus 170 ---------------------H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw----~i~k~It~pf~~~~~~T~f~R 224 (942)
T KOG0973|consen 170 ---------------------HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDW----GIEKSITKPFEESPLTTFFLR 224 (942)
T ss_pred ---------------------ccccccceEECCccCeeeeecCCceEEEEEcccc----eeeEeeccchhhCCCcceeee
Confidence 5556999999998 9999999999999996663 333333322 26889
Q ss_pred EEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCCccee
Q 041206 214 LSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKNNAEL 292 (371)
Q Consensus 214 ~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 292 (371)
+.|+|||+ |++. .++.+.-.++.|.+-.+.+.-..|-+|..++.++.|++.++=---.+|+-.
T Consensus 225 lSWSPDG~~las~---nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~------------- 288 (942)
T KOG0973|consen 225 LSWSPDGHHLASP---NAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTST------------- 288 (942)
T ss_pred cccCCCcCeecch---hhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCcc-------------
Confidence 99999998 5544 122244567899998888888999999999999999854321100122100
Q ss_pred cceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecC--CceEEEEEeCCCC-eEEeeCCCCcEEEEEcccccee
Q 041206 293 SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFS--RREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 293 ~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~ 367 (371)
... ..+ ..+++|+.|++|.||.....+++....+ ...|.+++|+||| .|+++|.||+|.++.++..++-
T Consensus 289 -~~~-~~y----~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG 360 (942)
T KOG0973|consen 289 -QPN-CYY----CIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELG 360 (942)
T ss_pred -CCC-cce----EEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhC
Confidence 000 000 2688999999999999988888877764 7899999999999 9999999999999999876553
No 91
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1.7e-27 Score=196.40 Aligned_cols=244 Identities=16% Similarity=0.291 Sum_probs=204.9
Q ss_pred eeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeC
Q 041206 87 ATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGR--CVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVN 164 (371)
Q Consensus 87 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 164 (371)
.....+..|.+.|..+.|-++...|++|+.|..|++|++..++ ...++.. .
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaG---------------------------s 218 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAG---------------------------S 218 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhc---------------------------c
Confidence 3456788899999999999999999999999999999987666 3333332 2
Q ss_pred CCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEE
Q 041206 165 AASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRT 240 (371)
Q Consensus 165 ~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~i 240 (371)
.++|+++.++++ .+++++.|+.+++|++... +...++.+|. .|+++.|..... +++| +.|.+|++
T Consensus 219 ~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~----r~~~TLsGHtdkVt~ak~~~~~~~vVsg-------s~DRtiK~ 287 (459)
T KOG0288|consen 219 LGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL----RLRHTLSGHTDKVTAAKFKLSHSRVVSG-------SADRTIKL 287 (459)
T ss_pred CCCcceeeecCCCceEEeecCCCceeeeeccch----hhhhhhcccccceeeehhhccccceeec-------cccchhhh
Confidence 336899999877 8999999999999999998 8899999999 999999998765 9999 99999999
Q ss_pred EECCCceEEEEeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCCcce---ecceEEEEecCCCCEEEEecCCCeEE
Q 041206 241 WNLDNLECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKNNAE---LSSLFGMLDAEAKPVLFSSGKDSAIR 317 (371)
Q Consensus 241 wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~ 317 (371)
||+....+.+++- ....+..|...+..++++..|++|++||.+....... ...+..+....++..+.+++.|.++.
T Consensus 288 WDl~k~~C~kt~l-~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~ 366 (459)
T KOG0288|consen 288 WDLQKAYCSKTVL-PGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLK 366 (459)
T ss_pred hhhhhhheecccc-ccccccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCcee
Confidence 9999988887765 3556778887788999999999999999887765222 23556666666777888889999999
Q ss_pred EEEcCCcceeeeecC-----CceEEEEEeCCCC-eEEeeCCCCcEEEEEccccceecc
Q 041206 318 LYELPSFKLRARIFS-----RREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQKM 369 (371)
Q Consensus 318 iwd~~~~~~~~~~~~-----~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~~~ 369 (371)
+.|+++......+.. ....+.+.|||++ ++++||.||.|+||++.++++.+.
T Consensus 367 viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~ 424 (459)
T KOG0288|consen 367 VIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKV 424 (459)
T ss_pred eeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEE
Confidence 999999887777653 4558899999999 999999999999999999887653
No 92
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=7.5e-25 Score=195.53 Aligned_cols=321 Identities=15% Similarity=0.212 Sum_probs=234.0
Q ss_pred ccccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCC
Q 041206 28 DLMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSG 107 (371)
Q Consensus 28 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~ 107 (371)
++.+++.+..++++.++|+++..+| ......-|-.++.|.+++ ....+.+.+++.-.++|++++|.-|
T Consensus 188 Nvrt~K~v~~f~~~~s~IT~ieqsP----aLDVVaiG~~~G~ViifN--------lK~dkil~sFk~d~g~VtslSFrtD 255 (910)
T KOG1539|consen 188 NVRTGKVVYTFQEFFSRITAIEQSP----ALDVVAIGLENGTVIIFN--------LKFDKILMSFKQDWGRVTSLSFRTD 255 (910)
T ss_pred EeccCcEEEEecccccceeEeccCC----cceEEEEeccCceEEEEE--------cccCcEEEEEEccccceeEEEeccC
Confidence 3678999999999999999999998 444444577778888888 3556889999955699999999998
Q ss_pred CC-EEEEEeCCCcEEEEECCCCceEEEEeC-C-CeeEEEe--ecCCEEEE-ecCCcEEEEEeCCC---------------
Q 041206 108 SN-KLYSGSRDGRVSVWDRDSGRCVNVITN-G-AEIGCLI--SEGSWVFL-GLPNAVKSWRVNAA--------------- 166 (371)
Q Consensus 108 ~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~-~-~~~~~~~--~~~~~~~~-~~~~~i~~~~~~~~--------------- 166 (371)
|+ .+|+|+..|.+.+||++..+.+..... + +.+.... +....+++ +.|+.+++|-.+++
T Consensus 256 G~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~ 335 (910)
T KOG1539|consen 256 GNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSA 335 (910)
T ss_pred CCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCC
Confidence 86 467777889999999998887766652 2 2222222 22333333 55676666654422
Q ss_pred CeeEEEEeCC---EEEEEeCCCeEE-------------------------------------------------------
Q 041206 167 SVNALVVNND---LLFAGSEGGVIS------------------------------------------------------- 188 (371)
Q Consensus 167 ~v~~~~~~~~---~l~~~~~dg~v~------------------------------------------------------- 188 (371)
+..++.|... ++.+++.|++.+
T Consensus 336 Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~ 415 (910)
T KOG1539|consen 336 PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVI 415 (910)
T ss_pred CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhccee
Confidence 4444444322 444444554444
Q ss_pred ----------EEeccCCCCcceee--EEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEe--
Q 041206 189 ----------VWKGTFVANPFKQV--ASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTL-- 252 (371)
Q Consensus 189 ----------iwd~~~~~~~~~~~--~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~-- 252 (371)
.|++++.....-.+ ..++... .+++++.++.|. .+.| +..|.|-+|++++|-....+
T Consensus 416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG-------~S~G~Id~fNmQSGi~r~sf~~ 488 (910)
T KOG1539|consen 416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIG-------YSKGTIDRFNMQSGIHRKSFGD 488 (910)
T ss_pred EEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEe-------ccCCeEEEEEcccCeeeccccc
Confidence 44444331100000 0111122 677788888776 4566 99999999999999888888
Q ss_pred -ecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCccee---cceEEEEecCCCCEEEEecCCCeEEEEEcCCcce
Q 041206 253 -KGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAEL---SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKL 326 (371)
Q Consensus 253 -~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 326 (371)
+.|..+|++++.+ ++.+++++.+|.+++||+........+ .++..+.......+++.+..|-.|+++|..+.+.
T Consensus 489 ~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv 568 (910)
T KOG1539|consen 489 SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV 568 (910)
T ss_pred CccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh
Confidence 5899999999998 678999999999999998877632222 2344445555555888999999999999999999
Q ss_pred eeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccccee
Q 041206 327 RARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 327 ~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~ 367 (371)
+.++. |.+.|++++||||| +|++++.|++|++||+.++.+.
T Consensus 569 vR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 569 VREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred hHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee
Confidence 99998 78999999999999 9999999999999999887654
No 93
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=6.1e-27 Score=181.25 Aligned_cols=262 Identities=15% Similarity=0.194 Sum_probs=212.1
Q ss_pred ccCCCCceeeccCccc-------ccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCc
Q 041206 14 KHSEGGETMMSDDDDL-------MKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSL 86 (371)
Q Consensus 14 ~~sp~g~~l~~~~~d~-------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (371)
...|+|-+|.++..|. ..|.-+-.+.+|...|....... .+....++..|-.-++|+ .-++
T Consensus 24 ~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~----na~~aasaaadftakvw~--------a~tg 91 (334)
T KOG0278|consen 24 PITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNK----NATRAASAAADFTAKVWD--------AVTG 91 (334)
T ss_pred CCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCc----hhhhhhhhcccchhhhhh--------hhhh
Confidence 4578999999998873 35778899999999987655443 233334466777888898 5667
Q ss_pred eeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-EEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCC
Q 041206 87 ATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRC-VNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNA 165 (371)
Q Consensus 87 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 165 (371)
..++.|. |..-|.+++|+.|.++|+||+.+..+||||++..+. ...+. -|+
T Consensus 92 delhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~---------------------------ght 143 (334)
T KOG0278|consen 92 DELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEIS---------------------------GHT 143 (334)
T ss_pred hhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhc---------------------------CCC
Confidence 7888886 899999999999999999999999999999876542 22222 256
Q ss_pred CCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCceeEecccceeeeeCCCeEEEEEC
Q 041206 166 ASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNL 243 (371)
Q Consensus 166 ~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~ 243 (371)
+.|..+.|... .+++.+.|++|++||.+++ ..++++....+|+++.++++|++++- ...+.|..||.
T Consensus 144 g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTg----t~v~sL~~~s~VtSlEvs~dG~ilTi-------a~gssV~Fwda 212 (334)
T KOG0278|consen 144 GGIRTVLWCHEDKCILSSADDKTVRLWDHRTG----TEVQSLEFNSPVTSLEVSQDGRILTI-------AYGSSVKFWDA 212 (334)
T ss_pred CcceeEEEeccCceEEeeccCCceEEEEeccC----cEEEEEecCCCCcceeeccCCCEEEE-------ecCceeEEecc
Confidence 67888888654 8888899999999999999 88888888789999999999998888 88999999999
Q ss_pred CCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC-----cceecceEEEEecCCCCEEEEecCCCeE
Q 041206 244 DNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN-----NAELSSLFGMLDAEAKPVLFSSGKDSAI 316 (371)
Q Consensus 244 ~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~d~~i 316 (371)
.+..+++.++. ...|.+...+ .+.+++|+.|..++.||+.+... .++...+-++.+.|++...++|+.||+|
T Consensus 213 ksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTi 291 (334)
T KOG0278|consen 213 KSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTI 291 (334)
T ss_pred ccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceE
Confidence 99999888763 4567777777 46899999999999999887664 4455667777777777799999999999
Q ss_pred EEEEcCCccee
Q 041206 317 RLYELPSFKLR 327 (371)
Q Consensus 317 ~iwd~~~~~~~ 327 (371)
++|.+..++..
T Consensus 292 rlWQt~~~~~~ 302 (334)
T KOG0278|consen 292 RLWQTTPGKTY 302 (334)
T ss_pred EEEEecCCCch
Confidence 99998766544
No 94
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=8e-26 Score=176.11 Aligned_cols=242 Identities=17% Similarity=0.149 Sum_probs=194.4
Q ss_pred EeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCee
Q 041206 90 MKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVN 169 (371)
Q Consensus 90 ~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~ 169 (371)
+.+++|...|.+++|+.+|..|++|+.|+++++|+++..+........ -|++.|-
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~-------------------------gh~~svd 68 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYR-------------------------GHTDSVD 68 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhccc-------------------------CCCcchh
Confidence 678899999999999999999999999999999999887554443321 2455688
Q ss_pred EEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eEecccceeeeeCCCeEEEEECCC
Q 041206 170 ALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDN 245 (371)
Q Consensus 170 ~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~ 245 (371)
.++|+|. .+++++.|.+|++||++.. ++.........-.-+.|+|+|. ++++ +.|..|...|.++
T Consensus 69 ql~w~~~~~d~~atas~dk~ir~wd~r~~----k~~~~i~~~~eni~i~wsp~g~~~~~~-------~kdD~it~id~r~ 137 (313)
T KOG1407|consen 69 QLCWDPKHPDLFATASGDKTIRIWDIRSG----KCTARIETKGENINITWSPDGEYIAVG-------NKDDRITFIDART 137 (313)
T ss_pred hheeCCCCCcceEEecCCceEEEEEeccC----cEEEEeeccCcceEEEEcCCCCEEEEe-------cCcccEEEEEecc
Confidence 8888765 9999999999999999998 7777776655445578899885 8889 9999999999999
Q ss_pred ceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcc----eecceEEEEecCCCCEEEEecCCCeEEEE
Q 041206 246 LECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNA----ELSSLFGMLDAEAKPVLFSSGKDSAIRLY 319 (371)
Q Consensus 246 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 319 (371)
.+.+...+ ....+.-++|+ +++++.....|+|.|..+...++.. +.....++.+.+.+++|++|+.|..+.+|
T Consensus 138 ~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLW 216 (313)
T KOG1407|consen 138 YKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLW 216 (313)
T ss_pred cceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeecc
Confidence 88877665 45567778887 6677777777999999876655422 22222334455556699999999999999
Q ss_pred EcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccceec
Q 041206 320 ELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 320 d~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
|+...-+...+. ..-+|+.+.||.|| +||+|++|..|-|=+++++....
T Consensus 217 D~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~ 267 (313)
T KOG1407|consen 217 DVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVW 267 (313)
T ss_pred ChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEE
Confidence 999988777776 57899999999999 99999999999888888775543
No 95
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.7e-24 Score=165.45 Aligned_cols=260 Identities=13% Similarity=0.100 Sum_probs=198.2
Q ss_pred CCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC--CCeeEEEeecCCEEEEecCCcEEEE
Q 041206 84 NSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN--GAEIGCLISEGSWVFLGLPNAVKSW 161 (371)
Q Consensus 84 ~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~ 161 (371)
+.++.+..|. .+..|.+++|+|.|.+.+.|+...+.+|--...-...+.-.. ..+...++-. -
T Consensus 21 ~~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr--------------~ 85 (350)
T KOG0641|consen 21 KHFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKR--------------N 85 (350)
T ss_pred cceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeee--------------c
Confidence 3455666665 567899999999999999999999999876442211111000 0010000000 0
Q ss_pred EeCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCc-ceeeEEEecCc-ceEEEEecCCc----e-eEecccceeee
Q 041206 162 RVNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANP-FKQVASIRAPL-WFCSLSSSNDT----R-WNSKEEAAVFE 232 (371)
Q Consensus 162 ~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~-~v~~~~~~~~~----~-l~~~~~~~~~~ 232 (371)
.-|.+.|+|.+|+|. ++++|++|.+|++.-++..... ......+..|. .|..++|..+. . |+++ +
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~------g 159 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA------G 159 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec------C
Confidence 126678999999998 9999999999999877654321 13445677788 99999997642 3 4443 1
Q ss_pred eCCCeEEEEECCCceEEEEeecCCCcEEEE-EEcCCeEEEEeCCCcEEEEEccCCCCcc-----------eecceEEEEe
Q 041206 233 FCGHTTRTWNLDNLECVQTLKGHSDTVTSL-LFWDEYLFSSSLDETIKIWLYTHTKNNA-----------ELSSLFGMLD 300 (371)
Q Consensus 233 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----------~~~~~~~~~~ 300 (371)
..|-.|++-|..+++..+.+.+|.+.|.++ .|++-++++|+.|.+|++||++.+.... ..+.+..+..
T Consensus 160 agdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v 239 (350)
T KOG0641|consen 160 AGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV 239 (350)
T ss_pred CCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence 567788999999999999999999999988 5668999999999999999987655311 1245667777
Q ss_pred cCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccc
Q 041206 301 AEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 301 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
.+.+++|++|-.|....+||++.+++++.+. |...|.++.|+|.. ++++++.|..|++-|+...
T Consensus 240 dpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 240 DPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred CCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 7888899999999999999999999999987 68899999999998 9999999999999998753
No 96
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=2.8e-26 Score=182.92 Aligned_cols=257 Identities=16% Similarity=0.228 Sum_probs=189.3
Q ss_pred eeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----eEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEe
Q 041206 88 TLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGR----CVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRV 163 (371)
Q Consensus 88 ~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 163 (371)
....+..|++++.+.+|+|||.++|||+.|..|+|.|++..- .......... ..--.|+.+--
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~q-------------a~hPvIRTlYD 170 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQ-------------ARHPVIRTLYD 170 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcc-------------cCCceEeehhh
Confidence 456778899999999999999999999999999999987321 1111110000 00012333334
Q ss_pred CCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eEecccceeeeeCCCeEEE
Q 041206 164 NAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRT 240 (371)
Q Consensus 164 ~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~i 240 (371)
|..+|+++.|+|. .|++|+.|++|++||+....-. +..+.++.-.+|.++.|+|.|. ++.| .....+++
T Consensus 171 H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saK-rA~K~~qd~~~vrsiSfHPsGefllvg-------TdHp~~rl 242 (430)
T KOG0640|consen 171 HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAK-RAFKVFQDTEPVRSISFHPSGEFLLVG-------TDHPTLRL 242 (430)
T ss_pred ccCcccceeecchhheEEeccCCCeEEEEecccHHHH-HHHHHhhccceeeeEeecCCCceEEEe-------cCCCceeE
Confidence 7778999999998 9999999999999999875211 2233333333999999999996 7788 88899999
Q ss_pred EECCCceEEEEe---ecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCC------CcceecceEEEEecCCCCEEEE
Q 041206 241 WNLDNLECVQTL---KGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTK------NNAELSSLFGMLDAEAKPVLFS 309 (371)
Q Consensus 241 wd~~~~~~~~~~---~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~l~~ 309 (371)
||+++.++.-.- ..|.+.|+++.++ +++.++++.||.|++||=-..+ ....-..++...+..+++++++
T Consensus 243 Ydv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLs 322 (430)
T KOG0640|consen 243 YDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILS 322 (430)
T ss_pred EeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEee
Confidence 999998876443 3689999999999 7899999999999999933322 2223346777788888889999
Q ss_pred ecCCCeEEEEEcCCcceeeeecCC------ceEEEEEeCCCC-eEEee-CCCCcEEEEEccccc
Q 041206 310 SGKDSAIRLYELPSFKLRARIFSR------REVEVDQIGPAG-LFFPG-DASGSVGVWKWLLAE 365 (371)
Q Consensus 310 ~~~d~~i~iwd~~~~~~~~~~~~~------~~v~~~~~s~~~-~l~~~-~~dg~i~iw~~~~~~ 365 (371)
.+.|..+++|.+.+++++.++.+. ..-+...|+... +++.- -..+.+.-||-.+..
T Consensus 323 SG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtad 386 (430)
T KOG0640|consen 323 SGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTAD 386 (430)
T ss_pred cCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchh
Confidence 999999999999999999888742 122344565555 44333 345678888877654
No 97
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=4.2e-26 Score=190.55 Aligned_cols=246 Identities=15% Similarity=0.198 Sum_probs=189.7
Q ss_pred CccCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEE
Q 041206 94 GHKKAVTNVGLPS-GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALV 172 (371)
Q Consensus 94 ~h~~~V~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~ 172 (371)
.|.+.|+.+.+.| +..++|+.+..+.|.|||..+..-...... .+...+.+.+ |++.-++++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~-------~~~Pdl~L~g----------H~~eg~gls 184 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG-------ECRPDLRLKG----------HEKEGYGLS 184 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc-------cCCCceEEEe----------ecccccccc
Confidence 4999999999999 556788888999999999875432222110 0111111222 333467789
Q ss_pred EeCC---EEEEEeCCCeEEEEeccCCCC---cceeeEEEecCc-ceEEEEecCCce--eEecccceeeeeCCCeEEEEEC
Q 041206 173 VNND---LLFAGSEGGVISVWKGTFVAN---PFKQVASIRAPL-WFCSLSSSNDTR--WNSKEEAAVFEFCGHTTRTWNL 243 (371)
Q Consensus 173 ~~~~---~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~-~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~iwd~ 243 (371)
|++. .+++++.|+.|++||+..... ...+...+.+|. .|..++|++-.. ++++ +.|+.+.|||+
T Consensus 185 Wn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv-------~dd~~L~iwD~ 257 (422)
T KOG0264|consen 185 WNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV-------GDDGKLMIWDT 257 (422)
T ss_pred cccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee-------cCCCeEEEEEc
Confidence 9887 999999999999999987654 235667888999 999999999653 7888 99999999999
Q ss_pred C--CceEEEEeecCCCcEEEEEEc---CCeEEEEeCCCcEEEEEccCCCCc-----ceecceEEE-EecCCCCEEEEecC
Q 041206 244 D--NLECVQTLKGHSDTVTSLLFW---DEYLFSSSLDETIKIWLYTHTKNN-----AELSSLFGM-LDAEAKPVLFSSGK 312 (371)
Q Consensus 244 ~--~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~-~~~~~~~~l~~~~~ 312 (371)
| +.++.+...+|.++|.|++|+ +..|||||.|++|.+||++..... .+-..+..+ ++|.....|++++.
T Consensus 258 R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~ 337 (422)
T KOG0264|consen 258 RSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT 337 (422)
T ss_pred CCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc
Confidence 9 566677888999999999999 579999999999999998876642 122233333 66667779999999
Q ss_pred CCeEEEEEcCCcceee------------eec---CCceEEEEEeCCCC--eEEeeCCCCcEEEEEccc
Q 041206 313 DSAIRLYELPSFKLRA------------RIF---SRREVEVDQIGPAG--LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 313 d~~i~iwd~~~~~~~~------------~~~---~~~~v~~~~~s~~~--~l~~~~~dg~i~iw~~~~ 363 (371)
|+.+.+||+..-.... -|. |...|..+.|+|+. .+++.+.|+.+.||++..
T Consensus 338 D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 338 DRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 9999999997532111 122 47789999999998 999999999999999874
No 98
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=3.1e-24 Score=181.63 Aligned_cols=311 Identities=15% Similarity=0.165 Sum_probs=238.6
Q ss_pred eEEEEEeeccceeeeeeeecceeeccceeeC----CccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcC--C
Q 041206 34 AEEREEMFGFGLAAMAIRVCNNWISDSCVYG----DKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPS--G 107 (371)
Q Consensus 34 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~--~ 107 (371)
..+.+.+|++.|.+++.+|.+..++..-..+ ...-.+++|+ ..+...++.+..-...|+|++|++ .
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWd--------sv~L~TL~V~g~f~~GV~~vaFsk~~~ 167 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWD--------SVTLSTLHVIGFFDRGVTCVAFSKING 167 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecc--------cccceeeeeeccccccceeeeecccCC
Confidence 4455779999999999999888665222212 1223588888 456677888888889999999998 4
Q ss_pred CCEEEEE--eCCCcEEEEECCCCceEEEEeCCCe-eEEEee---cCCEEEEecCCcEEEEEeCCC---------------
Q 041206 108 SNKLYSG--SRDGRVSVWDRDSGRCVNVITNGAE-IGCLIS---EGSWVFLGLPNAVKSWRVNAA--------------- 166 (371)
Q Consensus 108 ~~~l~s~--~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~i~~~~~~~~--------------- 166 (371)
|.+|+.- +.+..+.+||+..+......+.... +....| +.+++++...+.+.+|++..+
T Consensus 168 G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk 247 (626)
T KOG2106|consen 168 GSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKK 247 (626)
T ss_pred CceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccce
Confidence 5555554 4567899999998877766665433 332233 467888888999999998776
Q ss_pred CeeEEEEeCC-EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECC
Q 041206 167 SVNALVVNND-LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLD 244 (371)
Q Consensus 167 ~v~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~ 244 (371)
-|.|++|.++ .+++|..+|.|.||+..+. +..+....|. .|.+++...+|.|++| +.|..|..||-.
T Consensus 248 ~Vl~v~F~engdviTgDS~G~i~Iw~~~~~----~~~k~~~aH~ggv~~L~~lr~GtllSG-------gKDRki~~Wd~~ 316 (626)
T KOG2106|consen 248 FVLCVTFLENGDVITGDSGGNILIWSKGTN----RISKQVHAHDGGVFSLCMLRDGTLLSG-------GKDRKIILWDDN 316 (626)
T ss_pred EEEEEEEcCCCCEEeecCCceEEEEeCCCc----eEEeEeeecCCceEEEEEecCccEeec-------CccceEEecccc
Confidence 6899999999 9999999999999999877 6666666898 9999999999999999 999999999942
Q ss_pred Cc----------------------e------------------EEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEE
Q 041206 245 NL----------------------E------------------CVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWL 282 (371)
Q Consensus 245 ~~----------------------~------------------~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd 282 (371)
-. . ......+|......++.+ .+.+++++.|+.+++|+
T Consensus 317 y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 317 YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN 396 (626)
T ss_pred ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc
Confidence 10 0 001224577777777777 57999999999999999
Q ss_pred ccCCCC--cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCCCCcEEEE
Q 041206 283 YTHTKN--NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDASGSVGVW 359 (371)
Q Consensus 283 ~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw 359 (371)
...-. ........+.-+.+.+ .++.|...|...+.|.++...+..-...+++++++|+|+| +||.|+.|+.|+||
T Consensus 397 -~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 397 -DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIY 474 (626)
T ss_pred -CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEE
Confidence 22111 1112233445566666 8999999999999999996666555568899999999999 99999999999999
Q ss_pred Eccccc
Q 041206 360 KWLLAE 365 (371)
Q Consensus 360 ~~~~~~ 365 (371)
.+....
T Consensus 475 ~Vs~~g 480 (626)
T KOG2106|consen 475 RVSANG 480 (626)
T ss_pred EECCCC
Confidence 997653
No 99
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9.2e-26 Score=196.15 Aligned_cols=292 Identities=20% Similarity=0.306 Sum_probs=223.2
Q ss_pred eeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceEEEEeCC-
Q 041206 61 CVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSG--RCVNVITNG- 137 (371)
Q Consensus 61 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~- 137 (371)
..+++.|+.|+.|+...++... +-..+..++.|.+.|+.++...+++.|+|+|.|-+|++|+...+ -+..++..+
T Consensus 40 LfTgGRDg~i~~W~~~~d~~~~--s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~ 117 (735)
T KOG0308|consen 40 LFTGGRDGIIRLWSVTQDSNEP--STPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHK 117 (735)
T ss_pred EEecCCCceEEEeccccccCCc--ccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhccc
Confidence 3458999999999954442211 11257889999999999999999999999999999999999877 566666654
Q ss_pred CeeEEEee---cCCEEEE-ecCCcEEEEEeCCC----------------------CeeEEEEeCC--EEEEEeCCCeEEE
Q 041206 138 AEIGCLIS---EGSWVFL-GLPNAVKSWRVNAA----------------------SVNALVVNND--LLFAGSEGGVISV 189 (371)
Q Consensus 138 ~~~~~~~~---~~~~~~~-~~~~~i~~~~~~~~----------------------~v~~~~~~~~--~l~~~~~dg~v~i 189 (371)
..+.|+.+ +...+++ |.|+.|.+||+.++ +|++++.++. .+++|+..+.+++
T Consensus 118 DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~ 197 (735)
T KOG0308|consen 118 DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRL 197 (735)
T ss_pred chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEE
Confidence 56788876 3444444 56999999999865 7899999998 8999999999999
Q ss_pred EeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEcC-
Q 041206 190 WKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWD- 266 (371)
Q Consensus 190 wd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~- 266 (371)
||.++. +.+..+++|. .|..+..++||. ++++ +.||+|++||+...+++.++..|...|.++..++
T Consensus 198 wDprt~----~kimkLrGHTdNVr~ll~~dDGt~~ls~-------sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~s 266 (735)
T KOG0308|consen 198 WDPRTC----KKIMKLRGHTDNVRVLLVNDDGTRLLSA-------SSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPS 266 (735)
T ss_pred eccccc----cceeeeeccccceEEEEEcCCCCeEeec-------CCCceEEeeeccccceeeeEEeccCceEEEeeCCC
Confidence 999999 8888999999 999999999995 9999 9999999999999999999999999999999885
Q ss_pred -CeEEEEeCCCcEEEEEccCCCCccee----cceEEEEecCCCCEEEEecCCCeEEEEEcCCcce-------ee------
Q 041206 267 -EYLFSSSLDETIKIWLYTHTKNNAEL----SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKL-------RA------ 328 (371)
Q Consensus 267 -~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-------~~------ 328 (371)
.++++|+.||.|..=|++.......+ ..+..+......+-+.++..|+.|+-|..+-... ..
T Consensus 267 f~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~ 346 (735)
T KOG0308|consen 267 FTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSN 346 (735)
T ss_pred cceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCC
Confidence 58999999999999998886421111 0111111121122347778889999997643211 11
Q ss_pred ------------eecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccc
Q 041206 329 ------------RIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 329 ------------~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~ 365 (371)
.+.+...+..-++-.|. .++|=...|.+.+||+-...
T Consensus 347 ~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~ 396 (735)
T KOG0308|consen 347 NHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACV 396 (735)
T ss_pred CccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeee
Confidence 01112233333444455 89999999999999987654
No 100
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.4e-25 Score=189.04 Aligned_cols=230 Identities=16% Similarity=0.208 Sum_probs=183.3
Q ss_pred cCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEe
Q 041206 96 KKAVTNVGLPSGSN-KLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVN 174 (371)
Q Consensus 96 ~~~V~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~ 174 (371)
.+.|.+++|+|... -+|+++. -.+.||+..+....+++..- ...|++++|.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srF---------------------------k~~v~s~~fR 77 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRF---------------------------KDVVYSVDFR 77 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhh---------------------------ccceeEEEee
Confidence 46799999999544 3555554 45999998877666644321 1138888888
Q ss_pred CC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce--eEecccceeeeeCCCeEEEEECCCceEE
Q 041206 175 ND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR--WNSKEEAAVFEFCGHTTRTWNLDNLECV 249 (371)
Q Consensus 175 ~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~iwd~~~~~~~ 249 (371)
.+ ++++|...|.|++||+.+. ..+..+..|+ ++..+.|+|++. +++| +.|+.+++||+.+....
T Consensus 78 ~DG~LlaaGD~sG~V~vfD~k~r----~iLR~~~ah~apv~~~~f~~~d~t~l~s~-------sDd~v~k~~d~s~a~v~ 146 (487)
T KOG0310|consen 78 SDGRLLAAGDESGHVKVFDMKSR----VILRQLYAHQAPVHVTKFSPQDNTMLVSG-------SDDKVVKYWDLSTAYVQ 146 (487)
T ss_pred cCCeEEEccCCcCcEEEeccccH----HHHHHHhhccCceeEEEecccCCeEEEec-------CCCceEEEEEcCCcEEE
Confidence 66 8889999999999997665 6888999999 999999999764 7888 99999999999998877
Q ss_pred EEeecCCCcEEEEEEc---CCeEEEEeCCCcEEEEEccCCCC----cceecceEEEEecCCCCEEEEecCCCeEEEEEcC
Q 041206 250 QTLKGHSDTVTSLLFW---DEYLFSSSLDETIKIWLYTHTKN----NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELP 322 (371)
Q Consensus 250 ~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 322 (371)
..+.+|++.|.+.+++ +..++||+.||+|++||.+.... ..+-..+..+..-+++.++++++. +.|++||+.
T Consensus 147 ~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~ 225 (487)
T KOG0310|consen 147 AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLT 225 (487)
T ss_pred EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEec
Confidence 7899999999999998 45899999999999999887742 111224444455555557887765 579999999
Q ss_pred C-cceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccc
Q 041206 323 S-FKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 323 ~-~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~ 365 (371)
+ ++++.... |...|+|+++..++ .|++|+-|+.+++|++.+-+
T Consensus 226 ~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K 271 (487)
T KOG0310|consen 226 TGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK 271 (487)
T ss_pred CCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceE
Confidence 5 45555555 89999999999999 99999999999999976544
No 101
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=9.4e-23 Score=156.03 Aligned_cols=286 Identities=15% Similarity=0.143 Sum_probs=211.5
Q ss_pred eeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCC-----cc--CCceeeEeeeCccCCeEEEEEcCCCCEEE
Q 041206 40 MFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDN-----TT--NSLATLMKLNGHKKAVTNVGLPSGSNKLY 112 (371)
Q Consensus 40 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~--~~~~~~~~l~~h~~~V~~~~~~~~~~~l~ 112 (371)
..++.|.+++|+|..-+ ...|+..+..++-....-.+. .+ +..-+.+.-+.|.+.|+|.+|+|+|++++
T Consensus 30 ~dsqairav~fhp~g~l----yavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gelia 105 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGL----YAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIA 105 (350)
T ss_pred cchhheeeEEecCCCce----EEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEE
Confidence 56788999999995553 233566666555432111111 11 11122334467899999999999999999
Q ss_pred EEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC------EEEEEe-CCC
Q 041206 113 SGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND------LLFAGS-EGG 185 (371)
Q Consensus 113 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~------~l~~~~-~dg 185 (371)
+|+.|.+|++-......+..+- .-.-+++|.+.|..++|-.+ .|++++ .|.
T Consensus 106 tgsndk~ik~l~fn~dt~~~~g----------------------~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc 163 (350)
T KOG0641|consen 106 TGSNDKTIKVLPFNADTCNATG----------------------HDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC 163 (350)
T ss_pred ecCCCceEEEEecccccccccC----------------------cceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence 9999999999876544432211 11235678888999999644 566654 467
Q ss_pred eEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEeec--C-----CC
Q 041206 186 VISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKG--H-----SD 257 (371)
Q Consensus 186 ~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~--~-----~~ 257 (371)
.|++-|...+ +.+..+.+|. .|.++---..-.+++| +.|.+|+.||++-..++.++.. | ..
T Consensus 164 ~iy~tdc~~g----~~~~a~sghtghilalyswn~~m~~sg-------sqdktirfwdlrv~~~v~~l~~~~~~~gless 232 (350)
T KOG0641|consen 164 KIYITDCGRG----QGFHALSGHTGHILALYSWNGAMFASG-------SQDKTIRFWDLRVNSCVNTLDNDFHDGGLESS 232 (350)
T ss_pred eEEEeecCCC----CcceeecCCcccEEEEEEecCcEEEcc-------CCCceEEEEeeeccceeeeccCcccCCCcccc
Confidence 7888899988 8899999999 8887754443468999 9999999999998888877642 2 25
Q ss_pred cEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCc----ceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcc-----e
Q 041206 258 TVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNN----AELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFK-----L 326 (371)
Q Consensus 258 ~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~ 326 (371)
.|.+++.. +++|++|-.|....+||++..+.. .+...+.++.++++..++++++.|..|++=|+...- .
T Consensus 233 avaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~ 312 (350)
T KOG0641|consen 233 AVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPI 312 (350)
T ss_pred eeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCce
Confidence 78888887 789999999999999999887752 233456777888888899999999999999987521 1
Q ss_pred eeeecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEcc
Q 041206 327 RARIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 327 ~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~ 362 (371)
+..-.|...+..+.|+|.. -+++.+.|.++.+|-+.
T Consensus 313 ~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 313 MVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 1122367888899999999 89999999999999764
No 102
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=7.2e-24 Score=192.19 Aligned_cols=217 Identities=13% Similarity=0.155 Sum_probs=159.9
Q ss_pred EeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC---EEEEEeCCCeEEEE
Q 041206 114 GSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND---LLFAGSEGGVISVW 190 (371)
Q Consensus 114 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~---~l~~~~~dg~v~iw 190 (371)
|+.++.|++|+......+..+.. |.+.|.+++|+|. +|++|+.|+.|++|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~g---------------------------H~~~V~~lafsP~~~~lLASgS~DgtIrIW 102 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKG---------------------------HTSSILDLQFNPCFSEILASGSEDLTIRVW 102 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcC---------------------------CCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Confidence 56677888888766555544443 6668999999984 89999999999999
Q ss_pred eccCCCCc----ceeeEEEecCc-ceEEEEecCCce--eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEE
Q 041206 191 KGTFVANP----FKQVASIRAPL-WFCSLSSSNDTR--WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLL 263 (371)
Q Consensus 191 d~~~~~~~----~~~~~~~~~~~-~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 263 (371)
|+.+.... ..++..+.+|. .|.+++|+|++. ++++ +.|+.|++||+++++.+..+. |...|.+++
T Consensus 103 Di~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg-------S~DgtIrIWDl~tg~~~~~i~-~~~~V~Sls 174 (568)
T PTZ00420 103 EIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS-------GFDSFVNIWDIENEKRAFQIN-MPKKLSSLK 174 (568)
T ss_pred ECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE-------eCCCeEEEEECCCCcEEEEEe-cCCcEEEEE
Confidence 99764211 12455678898 999999999875 5688 999999999999998887776 667899999
Q ss_pred Ec--CCeEEEEeCCCcEEEEEccCCCCccee----cc-----eEEEEecCCCCEEEEecCCC----eEEEEEcCC-ccee
Q 041206 264 FW--DEYLFSSSLDETIKIWLYTHTKNNAEL----SS-----LFGMLDAEAKPVLFSSGKDS----AIRLYELPS-FKLR 327 (371)
Q Consensus 264 ~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~-----~~~~~~~~~~~~l~~~~~d~----~i~iwd~~~-~~~~ 327 (371)
|+ +++|++++.|+.|++||++.......+ .. +....+.+++.++++++.++ .|+|||++. .+++
T Consensus 175 wspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl 254 (568)
T PTZ00420 175 WNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSAL 254 (568)
T ss_pred ECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCce
Confidence 98 789999999999999999876532111 11 11111124444788777664 799999995 4555
Q ss_pred eeecCC---ceEEEEEeCCCC-eEEeeCCCCcEEEEEccccc
Q 041206 328 ARIFSR---REVEVDQIGPAG-LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 328 ~~~~~~---~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~ 365 (371)
..+... +.+......++| ++++|+.|+.|++|++..+.
T Consensus 255 ~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 255 VTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred EEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 554432 233333345557 89999999999999997654
No 103
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.4e-24 Score=172.62 Aligned_cols=236 Identities=14% Similarity=0.163 Sum_probs=181.4
Q ss_pred eCccCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeE
Q 041206 93 NGHKKAVTNVGLPS-GSNKLYSGSRDGRVSVWDRDS-GRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNA 170 (371)
Q Consensus 93 ~~h~~~V~~~~~~~-~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~ 170 (371)
..-++.|.+++||| ...+++.+|.||+||+|+++. |..+.... .-+.++|.+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~--------------------------~~~~~PvL~ 77 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQ--------------------------QSHDGPVLD 77 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhh--------------------------hccCCCeEE
Confidence 34568899999999 556677899999999999986 34333211 115667999
Q ss_pred EEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce---eEecccceeeeeCCCeEEEEECC
Q 041206 171 LVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR---WNSKEEAAVFEFCGHTTRTWNLD 244 (371)
Q Consensus 171 ~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~---l~~~~~~~~~~~~dg~i~iwd~~ 244 (371)
++|+.+ .+++|+.|+.+++||+.++ ....+..|. +|.++.|-+... |++| +.|.+|+.||++
T Consensus 78 v~WsddgskVf~g~~Dk~~k~wDL~S~-----Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TG-------SWDKTlKfWD~R 145 (347)
T KOG0647|consen 78 VCWSDDGSKVFSGGCDKQAKLWDLASG-----QVSQVAAHDAPVKTCHWVPGMNYQCLVTG-------SWDKTLKFWDTR 145 (347)
T ss_pred EEEccCCceEEeeccCCceEEEEccCC-----CeeeeeecccceeEEEEecCCCcceeEec-------ccccceeecccC
Confidence 999988 9999999999999999997 466788888 999999988543 7889 999999999999
Q ss_pred CceEEEEeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCC-----ccee-cceEEE-EecCCCCEEEEecCCCeEE
Q 041206 245 NLECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKN-----NAEL-SSLFGM-LDAEAKPVLFSSGKDSAIR 317 (371)
Q Consensus 245 ~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~-~~~~~~-~~~~~~~~l~~~~~d~~i~ 317 (371)
...++.+++ -.+.++++..-..+++.+..++.|.+|+|+.+.. ..++ ..+.++ .+.+.. ..+.|+-+|.+.
T Consensus 146 ~~~pv~t~~-LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~-~~alGsiEGrv~ 223 (347)
T KOG0647|consen 146 SSNPVATLQ-LPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKD-GFALGSIEGRVA 223 (347)
T ss_pred CCCeeeeee-ccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCC-ceEeeeecceEE
Confidence 999998887 4567888888888999999999999999966542 1111 122222 233333 458899999999
Q ss_pred EEEcCCcce--eeeec-C---------CceEEEEEeCCCC-eEEeeCCCCcEEEEEccccceec
Q 041206 318 LYELPSFKL--RARIF-S---------RREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 318 iwd~~~~~~--~~~~~-~---------~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
|..+..+.+ -..+. | --.|++++|+|.- .|+|++.||+..+||-.....++
T Consensus 224 iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk 287 (347)
T KOG0647|consen 224 IQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLK 287 (347)
T ss_pred EEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhh
Confidence 999887632 22222 2 1268899999977 99999999999999987654443
No 104
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.6e-24 Score=180.00 Aligned_cols=254 Identities=18% Similarity=0.228 Sum_probs=204.9
Q ss_pred ceeeccCcc-------cccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEee
Q 041206 20 ETMMSDDDD-------LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKL 92 (371)
Q Consensus 20 ~~l~~~~~d-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l 92 (371)
....+|+.| .++++.+..++||+..|..+.+++ .......++.+..|++|+ .+. -......
T Consensus 232 ~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~----~~~~v~~aSad~~i~vws-------~~~-~s~~~~~ 299 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHK----DLDTVITASADEIIRVWS-------VPL-SSEPTSS 299 (506)
T ss_pred CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEecc----chhheeecCCcceEEeec-------ccc-ccCcccc
Confidence 445555555 557889999999999999999999 555556688999999999 333 3466778
Q ss_pred eCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEE
Q 041206 93 NGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALV 172 (371)
Q Consensus 93 ~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~ 172 (371)
+.|..+|+.+..+|.|.||++++.||+..+.|++++.++........ .-.+++.+
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s-------------------------~v~~ts~~ 354 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETS-------------------------DVEYTSAA 354 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccc-------------------------cceeEEee
Confidence 89999999999999999999999999999999999998877664211 11489999
Q ss_pred EeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceE
Q 041206 173 VNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLEC 248 (371)
Q Consensus 173 ~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~ 248 (371)
|+|+ .+.+|+.||.|+|||+..+ .....|.+|. +|..++|+.+|. ++++ +.|+.|++||+|..+.
T Consensus 355 fHpDgLifgtgt~d~~vkiwdlks~----~~~a~Fpght~~vk~i~FsENGY~Lat~-------add~~V~lwDLRKl~n 423 (506)
T KOG0289|consen 355 FHPDGLIFGTGTPDGVVKIWDLKSQ----TNVAKFPGHTGPVKAISFSENGYWLATA-------ADDGSVKLWDLRKLKN 423 (506)
T ss_pred EcCCceEEeccCCCceEEEEEcCCc----cccccCCCCCCceeEEEeccCceEEEEE-------ecCCeEEEEEehhhcc
Confidence 9999 8889999999999999998 6788999999 999999999997 8899 9999999999999887
Q ss_pred EEEeecCC-CcEEEEEEc--CCeEEEEeCCCcEEEEEccCCC-----C-cceecceEEEEecCCCCEEEEecCCCeEEEE
Q 041206 249 VQTLKGHS-DTVTSLLFW--DEYLFSSSLDETIKIWLYTHTK-----N-NAELSSLFGMLDAEAKPVLFSSGKDSAIRLY 319 (371)
Q Consensus 249 ~~~~~~~~-~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~-----~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 319 (371)
.+++.-.. .++.++.|+ +.+|+.++.|=+|++++-.+.. . ..+......+.+.....++++++.|..++++
T Consensus 424 ~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 424 FKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred cceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 77776433 379999998 8999999888777777632222 1 1111234455677777799999999998887
Q ss_pred Ec
Q 041206 320 EL 321 (371)
Q Consensus 320 d~ 321 (371)
.+
T Consensus 504 a~ 505 (506)
T KOG0289|consen 504 AL 505 (506)
T ss_pred ec
Confidence 64
No 105
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=3.1e-25 Score=187.54 Aligned_cols=273 Identities=18% Similarity=0.219 Sum_probs=219.6
Q ss_pred eeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeee--CccCCeEEEEEcCCCCEEEEEeCC
Q 041206 40 MFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLN--GHKKAVTNVGLPSGSNKLYSGSRD 117 (371)
Q Consensus 40 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~~~~~~~~~~l~s~~~d 117 (371)
.|..-|.+++.+..... ++.+..+-+++|+++..+.. .++..|. ...+.|+++.+.|||+.|++|+.-
T Consensus 417 ~HGEvVcAvtIS~~trh-----VyTgGkgcVKVWdis~pg~k-----~PvsqLdcl~rdnyiRSckL~pdgrtLivGGea 486 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRH-----VYTGGKGCVKVWDISQPGNK-----SPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA 486 (705)
T ss_pred ccCcEEEEEEecCCcce-----eEecCCCeEEEeeccCCCCC-----CccccccccCcccceeeeEecCCCceEEecccc
Confidence 57887777776543222 23456678999997654222 2233332 245789999999999999999999
Q ss_pred CcEEEEECCCCceEE--EEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEecc
Q 041206 118 GRVSVWDRDSGRCVN--VITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVWKGT 193 (371)
Q Consensus 118 g~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~ 193 (371)
.++.|||+..-...- .+....+ ..++++.+|+ ..++++.||.|.|||+.
T Consensus 487 stlsiWDLAapTprikaeltssap---------------------------aCyALa~spDakvcFsccsdGnI~vwDLh 539 (705)
T KOG0639|consen 487 STLSIWDLAAPTPRIKAELTSSAP---------------------------ACYALAISPDAKVCFSCCSDGNIAVWDLH 539 (705)
T ss_pred ceeeeeeccCCCcchhhhcCCcch---------------------------hhhhhhcCCccceeeeeccCCcEEEEEcc
Confidence 999999998654322 2222111 3677888888 88899999999999999
Q ss_pred CCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeE
Q 041206 194 FVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYL 269 (371)
Q Consensus 194 ~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l 269 (371)
+. ..+..|++|. .+.||.+++||. |.+| +-|++|+.||+++++.++... ....|.++.+. ++++
T Consensus 540 nq----~~VrqfqGhtDGascIdis~dGtklWTG-------GlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWl 607 (705)
T KOG0639|consen 540 NQ----TLVRQFQGHTDGASCIDISKDGTKLWTG-------GLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWL 607 (705)
T ss_pred cc----eeeecccCCCCCceeEEecCCCceeecC-------CCccceeehhhhhhhhhhhhh-hhhhheecccCCCccce
Confidence 98 8999999999 999999999995 9999 999999999999988776544 45688898887 6899
Q ss_pred EEEeCCCcEEEEEccCCCC---cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-
Q 041206 270 FSSSLDETIKIWLYTHTKN---NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG- 345 (371)
Q Consensus 270 ~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~- 345 (371)
+.|-.++.+.+-..+..+. ..+-+++..+-+...++++++.+.|+.+..|.+.-+..+.+....++|.++.+|.|.
T Consensus 608 avGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddk 687 (705)
T KOG0639|consen 608 AVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDK 687 (705)
T ss_pred eeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCce
Confidence 9999999998888766553 223356666777777789999999999999999999999999999999999999999
Q ss_pred eEEeeCCCCcEEEEEc
Q 041206 346 LFFPGDASGSVGVWKW 361 (371)
Q Consensus 346 ~l~~~~~dg~i~iw~~ 361 (371)
+++||+.|..-.||.+
T Consensus 688 yIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 688 YIVTGSGDKKATVYEV 703 (705)
T ss_pred EEEecCCCcceEEEEE
Confidence 9999999999999876
No 106
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1e-24 Score=182.81 Aligned_cols=245 Identities=19% Similarity=0.259 Sum_probs=192.8
Q ss_pred EeCC-CcEEEEECCCCceEEEEeCCCeeEE---EeecCCEEEEec--CCcEEEEEeCCC-----------CeeEEEEeCC
Q 041206 114 GSRD-GRVSVWDRDSGRCVNVITNGAEIGC---LISEGSWVFLGL--PNAVKSWRVNAA-----------SVNALVVNND 176 (371)
Q Consensus 114 ~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~i~~~~~~~~-----------~v~~~~~~~~ 176 (371)
++.| .++.+||+.+|....+++....... -.-++.+++++. ...+.+|.++.. +|.+++-+|.
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~ 92 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNL 92 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccceeeeecCCC
Confidence 3444 4599999999999888887522111 112345665543 456777777644 7999999988
Q ss_pred --EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECC--------
Q 041206 177 --LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLD-------- 244 (371)
Q Consensus 177 --~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~-------- 244 (371)
+++.|+..|.+++|.+.++ ..+..+..|- .|+|+.|+.|+. +++| +.||.|.+|++-
T Consensus 93 G~~l~ag~i~g~lYlWelssG----~LL~v~~aHYQ~ITcL~fs~dgs~iiTg-------skDg~V~vW~l~~lv~a~~~ 161 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSG----ILLNVLSAHYQSITCLKFSDDGSHIITG-------SKDGAVLVWLLTDLVSADND 161 (476)
T ss_pred ceEEEeecccCcEEEEEeccc----cHHHHHHhhccceeEEEEeCCCcEEEec-------CCCccEEEEEEEeecccccC
Confidence 6666669999999999999 8899999999 999999999996 9999 999999999874
Q ss_pred -CceEEEEeecCCCcEEEEEEc----CCeEEEEeCCCcEEEEEccCCCCccee---cceEEEEecCCCCEEEEecCCCeE
Q 041206 245 -NLECVQTLKGHSDTVTSLLFW----DEYLFSSSLDETIKIWLYTHTKNNAEL---SSLFGMLDAEAKPVLFSSGKDSAI 316 (371)
Q Consensus 245 -~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i 316 (371)
+-++++.|..|.-+|+++... ..+++|+|.|.++++||+........+ ..+.++...+.++.+++|+.+|.|
T Consensus 162 ~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I 241 (476)
T KOG0646|consen 162 HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKI 241 (476)
T ss_pred CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceE
Confidence 246788899999999999887 369999999999999999887642221 345566667777799999999999
Q ss_pred EEEEcCCcc----------------eeeeec-CC--ceEEEEEeCCCC-eEEeeCCCCcEEEEEccccceecc
Q 041206 317 RLYELPSFK----------------LRARIF-SR--REVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQKM 369 (371)
Q Consensus 317 ~iwd~~~~~----------------~~~~~~-~~--~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~~~ 369 (371)
.+.++.... .+..+. |. .+|+|++++-|| +|++|+.||.++|||+.+.++.+.
T Consensus 242 ~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt 314 (476)
T KOG0646|consen 242 FQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT 314 (476)
T ss_pred EeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence 998875532 111222 23 489999999999 999999999999999999887664
No 107
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=8.4e-25 Score=191.54 Aligned_cols=239 Identities=23% Similarity=0.330 Sum_probs=192.3
Q ss_pred CceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeC
Q 041206 85 SLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVN 164 (371)
Q Consensus 85 ~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 164 (371)
.+++-+++.||...|..+++.+. ..++++|+||++++|+-..++.+.+.....+..++
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i--------------------- 60 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFI--------------------- 60 (745)
T ss_pred cceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCccee---------------------
Confidence 56788999999999999998754 48999999999999997666665543332222111
Q ss_pred CCCeeEEEEeC--C-EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEE
Q 041206 165 AASVNALVVNN--D-LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRT 240 (371)
Q Consensus 165 ~~~v~~~~~~~--~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~i 240 (371)
...+++.+ . .+++|+.|..+.+|.+.+. .++..+++|+ .|+|+....++.+++| +.|.++++
T Consensus 61 ---~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~----~P~~~LkgH~snVC~ls~~~~~~~iSg-------SWD~Takv 126 (745)
T KOG0301|consen 61 ---ANSICYAESDKGRLVVGGMDTTIIVFKLSQA----EPLYTLKGHKSNVCSLSIGEDGTLISG-------SWDSTAKV 126 (745)
T ss_pred ---eccceeccccCcceEeecccceEEEEecCCC----CchhhhhccccceeeeecCCcCceEec-------ccccceEE
Confidence 12245543 2 7999999999999999998 8999999999 9999999998889999 99999999
Q ss_pred EECCCceEEEEeecCCCcEEEEEEc-CCeEEEEeCCCcEEEEEccCCC--CcceecceEEEEecCCCCEEEEecCCCeEE
Q 041206 241 WNLDNLECVQTLKGHSDTVTSLLFW-DEYLFSSSLDETIKIWLYTHTK--NNAELSSLFGMLDAEAKPVLFSSGKDSAIR 317 (371)
Q Consensus 241 wd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 317 (371)
|-.. ++...+++|+.+|.++..- .+.++|||.|.+|++|.-.... -.++...+..+..-++. .|++++.||.|+
T Consensus 127 W~~~--~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir 203 (745)
T KOG0301|consen 127 WRIG--ELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIR 203 (745)
T ss_pred ecch--hhhcccCCcchheeeeeecCCCcEEeccCcceeeeccCCchhhhhccchhheeeeEEecCC-CeEeecCCceEE
Confidence 9764 6677799999999999887 6799999999999999843322 24455566766666665 689999999999
Q ss_pred EEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEcc
Q 041206 318 LYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 318 iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~ 362 (371)
+|++....+.....|.+-|++++..+++ .++++++|++++||+..
T Consensus 204 ~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 204 LWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 9999554444444578999999966655 99999999999999986
No 108
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.8e-23 Score=165.88 Aligned_cols=280 Identities=17% Similarity=0.226 Sum_probs=213.0
Q ss_pred EEeeccceeeeeeeec--ceeeccceeeCCccceEEEEEeccCCCCccCCc--eee-----EeeeCccCCeEEEEEcC-C
Q 041206 38 EEMFGFGLAAMAIRVC--NNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSL--ATL-----MKLNGHKKAVTNVGLPS-G 107 (371)
Q Consensus 38 ~~~h~~~v~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~-----~~l~~h~~~V~~~~~~~-~ 107 (371)
.+.|.++|+++...+. ++.+ +|+.++.|.+|++....+...... +.+ ..-.+|.-.|..+.|-| |
T Consensus 39 ~r~HgGsvNsL~id~tegryml-----SGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D 113 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYML-----SGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID 113 (397)
T ss_pred eccCCCccceeeeccccceEEe-----ecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec
Confidence 4678999998876542 3334 489999999999655432222111 111 22357888999999999 7
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC-----EEEEEe
Q 041206 108 SNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND-----LLFAGS 182 (371)
Q Consensus 108 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~-----~l~~~~ 182 (371)
.-.+.+++.|.++++||..+.+....|+.++. |++-+++|- ++++|.
T Consensus 114 tGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~----------------------------VYshamSp~a~sHcLiA~gt 165 (397)
T KOG4283|consen 114 TGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGK----------------------------VYSHAMSPMAMSHCLIAAGT 165 (397)
T ss_pred CceeecccccceEEEeecccceeeEEeecCce----------------------------eehhhcChhhhcceEEEEec
Confidence 77999999999999999999999888886654 666666664 889999
Q ss_pred CCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce--eEecccceeeeeCCCeEEEEECCCc-eEEE--------
Q 041206 183 EGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR--WNSKEEAAVFEFCGHTTRTWNLDNL-ECVQ-------- 250 (371)
Q Consensus 183 ~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~iwd~~~~-~~~~-------- 250 (371)
.+-.|++-|+..+ .....+.+|. .|.++.|+|... |++| +.||.|++||++.- .+..
T Consensus 166 r~~~VrLCDi~SG----s~sH~LsGHr~~vlaV~Wsp~~e~vLatg-------saDg~irlWDiRrasgcf~~lD~hn~k 234 (397)
T KOG4283|consen 166 RDVQVRLCDIASG----SFSHTLSGHRDGVLAVEWSPSSEWVLATG-------SADGAIRLWDIRRASGCFRVLDQHNTK 234 (397)
T ss_pred CCCcEEEEeccCC----cceeeeccccCceEEEEeccCceeEEEec-------CCCceEEEEEeecccceeEEeecccCc
Confidence 9999999999999 8889999999 999999999875 8899 99999999999853 2222
Q ss_pred ------EeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcc----ee-----cceEE-EEecCCCCEEEEecC
Q 041206 251 ------TLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNA----EL-----SSLFG-MLDAEAKPVLFSSGK 312 (371)
Q Consensus 251 ------~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~----~~-----~~~~~-~~~~~~~~~l~~~~~ 312 (371)
+-..|.+.|..++|. +.++++++.|..+++|+...++... ++ ..... ......+ .++---.
T Consensus 235 ~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~-vfv~~p~ 313 (397)
T KOG4283|consen 235 RPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSD-VFVLFPN 313 (397)
T ss_pred cCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccc-eEEEEec
Confidence 223577899999998 7899999999999999976655310 00 01111 1122222 3444445
Q ss_pred CCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcc
Q 041206 313 DSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 313 d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~ 362 (371)
++.+.++++-++..+..+. |-..+.+..+-|+- ...+|..|+.|..|-..
T Consensus 314 ~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 314 DGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred CCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCcccccccc
Confidence 6889999999998888777 56788999999988 99999999999999874
No 109
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=4.5e-23 Score=180.79 Aligned_cols=326 Identities=17% Similarity=0.173 Sum_probs=237.5
Q ss_pred cceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCc-------------cCCceee--------
Q 041206 31 KGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNT-------------TNSLATL-------- 89 (371)
Q Consensus 31 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------------~~~~~~~-------- 89 (371)
+-+.+..++||.+.|..++|..... -.....++++|.+|++|+....++.. .+.....
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~-~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is 258 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGG-DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRIS 258 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCC-CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEe
Confidence 3467888999999999999875433 11123458899999999987765211 0111111
Q ss_pred --EeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eEEEEeCC-------CeeEEEee-cCCEEEE-ecCC
Q 041206 90 --MKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGR--CVNVITNG-------AEIGCLIS-EGSWVFL-GLPN 156 (371)
Q Consensus 90 --~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~-------~~~~~~~~-~~~~~~~-~~~~ 156 (371)
..+.||++.|+++.|+|.+..|+|+|.|.++.+|.-++.. -+.....+ +-..++.. +++.+++ +..|
T Consensus 259 ~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~G 338 (764)
T KOG1063|consen 259 FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTG 338 (764)
T ss_pred hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccC
Confidence 2345999999999999999999999999999999876552 22222221 12334433 3444444 6678
Q ss_pred cEEEEEe--------------CCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecC-
Q 041206 157 AVKSWRV--------------NAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSN- 218 (371)
Q Consensus 157 ~i~~~~~--------------~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~- 218 (371)
..+.|.. |...|.+++|+|. +|++.+.|.+-|++-.-..+..+..+...+.|. .++|+++-+
T Consensus 339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence 8888882 3338999999987 999999999999997764444456666677788 999999999
Q ss_pred CceeEecccceeeeeCCCeEEEEECCC-------------------------------------------ce--------
Q 041206 219 DTRWNSKEEAAVFEFCGHTTRTWNLDN-------------------------------------------LE-------- 247 (371)
Q Consensus 219 ~~~l~~~~~~~~~~~~dg~i~iwd~~~-------------------------------------------~~-------- 247 (371)
+-++++| ..+..+++|+... |.
T Consensus 419 ~~~FVSg-------AdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et 491 (764)
T KOG1063|consen 419 DLQFVSG-------ADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAET 491 (764)
T ss_pred Cceeeec-------ccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeec
Confidence 5568999 7778888877541 00
Q ss_pred -------------------------EEEEeecCCCcEEEEEEc--CCeEEEEeCCC-----cEEEEEccCCCC----cce
Q 041206 248 -------------------------CVQTLKGHSDTVTSLLFW--DEYLFSSSLDE-----TIKIWLYTHTKN----NAE 291 (371)
Q Consensus 248 -------------------------~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg-----~i~iwd~~~~~~----~~~ 291 (371)
.++.+.+|...|++++.+ ++++++++... .|++|+..+-.. ..+
T Consensus 492 ~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~H 571 (764)
T KOG1063|consen 492 PLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGH 571 (764)
T ss_pred ccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheeccc
Confidence 112345788999999999 78999988643 589999655332 334
Q ss_pred ecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceee-e---e-cCCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccc
Q 041206 292 LSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRA-R---I-FSRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 292 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~---~-~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
.-.++.+.+++++++|++.+.|.++.+|......... . . .|..-|++..|+|++ +++|+|.|.+|+||.....
T Consensus 572 sLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 572 SLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred ceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 4466777788888899999999999999875532211 1 1 267889999999999 8999999999999998876
No 110
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.8e-24 Score=166.03 Aligned_cols=243 Identities=21% Similarity=0.219 Sum_probs=181.3
Q ss_pred EeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcC--CCCEEEEEeC
Q 041206 39 EMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPS--GSNKLYSGSR 116 (371)
Q Consensus 39 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~--~~~~l~s~~~ 116 (371)
..|.+.|........+. ...+.+.|+.|+++....+ ...+++.+|+||+++|..++|.. .|.+||+++.
T Consensus 8 t~H~D~IHda~lDyygk----rlATcsSD~tVkIf~v~~n-----~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsY 78 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGK----RLATCSSDGTVKIFEVRNN-----GQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSY 78 (299)
T ss_pred hhhhhhhhHhhhhhhcc----eeeeecCCccEEEEEEcCC-----CCceeeeEecCCCCCeeEEeecccccCcEeeEeec
Confidence 45666665443322222 2223567888999884321 11378999999999999999964 8999999999
Q ss_pred CCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC----EEEEEeCCCeEEEEec
Q 041206 117 DGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND----LLFAGSEGGVISVWKG 192 (371)
Q Consensus 117 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~----~l~~~~~dg~v~iwd~ 192 (371)
||.|.||.-++++-.+... |..|...|++++|-|. .|++++.||.|.|++.
T Consensus 79 DgkVIiWke~~g~w~k~~e-------------------------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~ 133 (299)
T KOG1332|consen 79 DGKVIIWKEENGRWTKAYE-------------------------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTY 133 (299)
T ss_pred CceEEEEecCCCchhhhhh-------------------------hhhhcccceeecccccccceEEEEeeCCCcEEEEEE
Confidence 9999999988875333222 2336678999999998 8999999999999998
Q ss_pred cCCCCcceeeEEEecCc-ceEEEEecCC---c------------eeEecccceeeeeCCCeEEEEECCCce--EEEEeec
Q 041206 193 TFVANPFKQVASIRAPL-WFCSLSSSND---T------------RWNSKEEAAVFEFCGHTTRTWNLDNLE--CVQTLKG 254 (371)
Q Consensus 193 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~---~------------~l~~~~~~~~~~~~dg~i~iwd~~~~~--~~~~~~~ 254 (371)
+.. ...........|. .|++++|.|. | +|++| +.|..|+||+...++ ..++|++
T Consensus 134 ~~~-g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSg-------GcDn~VkiW~~~~~~w~~e~~l~~ 205 (299)
T KOG1332|consen 134 DSS-GGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSG-------GCDNLVKIWKFDSDSWKLERTLEG 205 (299)
T ss_pred cCC-CCccchhhhhccccccceeeecCcCCCccccccCcccccceeecc-------CCccceeeeecCCcchhhhhhhhh
Confidence 775 2224455667888 9999999985 3 26777 999999999998753 3456899
Q ss_pred CCCcEEEEEEcC------CeEEEEeCCCcEEEEEccCCCC-------cceecceEEEEecCCCCEEEEecCCCeEEEEEc
Q 041206 255 HSDTVTSLLFWD------EYLFSSSLDETIKIWLYTHTKN-------NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYEL 321 (371)
Q Consensus 255 ~~~~v~~~~~~~------~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 321 (371)
|.+.|+.++|.| .+|++|+.||++.||-.+.... ......+..+.++..+++|++++.|+.|.+|.-
T Consensus 206 H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 206 HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred cchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 999999999983 4899999999999998663321 111223455566666779999999999999976
Q ss_pred CC
Q 041206 322 PS 323 (371)
Q Consensus 322 ~~ 323 (371)
..
T Consensus 286 ~~ 287 (299)
T KOG1332|consen 286 NV 287 (299)
T ss_pred CC
Confidence 54
No 111
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=4.3e-24 Score=178.60 Aligned_cols=254 Identities=15% Similarity=0.181 Sum_probs=195.0
Q ss_pred EEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccC--CceeeEeeeCccCCeEEEEEcC-CCCEEEEE
Q 041206 38 EEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTN--SLATLMKLNGHKKAVTNVGLPS-GSNKLYSG 114 (371)
Q Consensus 38 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~ 114 (371)
...|.+.|..+...|.+..+.+ +......+.+|+.+........ ...+-.+|.||++.=++++|++ ..-.|+++
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVA---t~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~ 196 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVA---TKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG 196 (422)
T ss_pred eccCCccchhhhhCCCCCcEEE---ecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence 3468888888888887765443 3455667888885554322221 4566679999999889999998 44579999
Q ss_pred eCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC---EEEEEeCCCeEEEEe
Q 041206 115 SRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND---LLFAGSEGGVISVWK 191 (371)
Q Consensus 115 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~---~l~~~~~dg~v~iwd 191 (371)
+.|++|++||+........ ......+++.|+..|..++|++. .+++++.|+.+.|||
T Consensus 197 ~~d~~i~lwdi~~~~~~~~--------------------~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD 256 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDK--------------------VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWD 256 (422)
T ss_pred cCCCcEEEEeccccccCCc--------------------cccceEEeecCCcceehhhccccchhhheeecCCCeEEEEE
Confidence 9999999999876543210 01234566778888999999876 899999999999999
Q ss_pred ccCCCCcceeeEEEecCc-ceEEEEecCCce--eEecccceeeeeCCCeEEEEECCCc-eEEEEeecCCCcEEEEEEc--
Q 041206 192 GTFVANPFKQVASIRAPL-WFCSLSSSNDTR--WNSKEEAAVFEFCGHTTRTWNLDNL-ECVQTLKGHSDTVTSLLFW-- 265 (371)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~-- 265 (371)
+++. ..++.....+|. ++.|++|+|-+. |++| +.|++|++||+|+. +++.++.+|...|..|.|+
T Consensus 257 ~R~~--~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~-------S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh 327 (422)
T KOG0264|consen 257 TRSN--TSKPSHSVKAHSAEVNCVAFNPFNEFILATG-------SADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPH 327 (422)
T ss_pred cCCC--CCCCcccccccCCceeEEEeCCCCCceEEec-------cCCCcEEEeechhcccCceeccCCCcceEEEEeCCC
Confidence 9963 227778889999 999999999653 8899 99999999999974 4688999999999999999
Q ss_pred -CCeEEEEeCCCcEEEEEccCCC------------------CcceecceEEEEecC-CCCEEEEecCCCeEEEEEcCC
Q 041206 266 -DEYLFSSSLDETIKIWLYTHTK------------------NNAELSSLFGMLDAE-AKPVLFSSGKDSAIRLYELPS 323 (371)
Q Consensus 266 -~~~l~s~~~dg~i~iwd~~~~~------------------~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~ 323 (371)
...|++++.|+.+.+||+..-. |.++...+....+.+ ....+++.++|+.+.||++..
T Consensus 328 ~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 328 NETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 4689999999999999975433 133334455444444 444678889999999999874
No 112
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=3.6e-23 Score=164.58 Aligned_cols=265 Identities=14% Similarity=0.177 Sum_probs=196.6
Q ss_pred Eeeccceeeeeeeec-ceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCC
Q 041206 39 EMFGFGLAAMAIRVC-NNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRD 117 (371)
Q Consensus 39 ~~h~~~v~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~d 117 (371)
....+.|.+++|+|. ..++ ..++-|+.++.|.+...+... -+....|.++|.+++|+.||..+++|+.|
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~----~A~SWD~tVR~wevq~~g~~~------~ka~~~~~~PvL~v~WsddgskVf~g~~D 93 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLL----AAGSWDGTVRIWEVQNSGQLV------PKAQQSHDGPVLDVCWSDDGSKVFSGGCD 93 (347)
T ss_pred CCcccchheeEeccccCceE----EecccCCceEEEEEecCCccc------chhhhccCCCeEEEEEccCCceEEeeccC
Confidence 456788999999992 2222 247899999999954322111 14566799999999999999999999999
Q ss_pred CcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC----EEEEEeCCCeEEEEecc
Q 041206 118 GRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND----LLFAGSEGGVISVWKGT 193 (371)
Q Consensus 118 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~----~l~~~~~dg~v~iwd~~ 193 (371)
+.+++||+.+++....-. |.++|.++.|-+. .|++|+.|.+|+.||.+
T Consensus 94 k~~k~wDL~S~Q~~~v~~----------------------------Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R 145 (347)
T KOG0647|consen 94 KQAKLWDLASGQVSQVAA----------------------------HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR 145 (347)
T ss_pred CceEEEEccCCCeeeeee----------------------------cccceeEEEEecCCCcceeEecccccceeecccC
Confidence 999999999997665544 5556888888665 78999999999999999
Q ss_pred CCCCcceeeEEEecCcceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEE-Eee-cCCCcEEEEEEc--CCeE
Q 041206 194 FVANPFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQ-TLK-GHSDTVTSLLFW--DEYL 269 (371)
Q Consensus 194 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~-~~~-~~~~~v~~~~~~--~~~l 269 (371)
.. .++.++.-...+.++..-.. .++.+ ..+..|.+|+++.+...+ ... .-.-.++|++.. .+..
T Consensus 146 ~~----~pv~t~~LPeRvYa~Dv~~p-m~vVa-------ta~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~ 213 (347)
T KOG0647|consen 146 SS----NPVATLQLPERVYAADVLYP-MAVVA-------TAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGF 213 (347)
T ss_pred CC----CeeeeeeccceeeehhccCc-eeEEE-------ecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCce
Confidence 88 78888887777777665442 34555 789999999998654332 111 123367788776 4566
Q ss_pred EEEeCCCcEEEEEccCCCC---------------cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CC
Q 041206 270 FSSSLDETIKIWLYTHTKN---------------NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SR 333 (371)
Q Consensus 270 ~s~~~dg~i~iwd~~~~~~---------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~ 333 (371)
+.|+-.|.+.+..+..+.+ ...+..+..+.+.+-...|++++.||+..+||-.....+.... +.
T Consensus 214 alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~ 293 (347)
T KOG0647|consen 214 ALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHP 293 (347)
T ss_pred EeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCC
Confidence 8999999999998776421 1124455666666666699999999999999988766666544 68
Q ss_pred ceEEEEEeCCCC-eE-EeeCCC
Q 041206 334 REVEVDQIGPAG-LF-FPGDAS 353 (371)
Q Consensus 334 ~~v~~~~~s~~~-~l-~~~~~d 353 (371)
.+|++.+|+.+| ++ .+.+.|
T Consensus 294 qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 294 QPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred CccceeEecCCCCEEEEEeecc
Confidence 999999999999 43 344443
No 113
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.8e-23 Score=173.98 Aligned_cols=302 Identities=14% Similarity=0.165 Sum_probs=227.5
Q ss_pred cCCCCceeeccCcccccceeEEEE-----E--eeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCce
Q 041206 15 HSEGGETMMSDDDDLMKGRAEERE-----E--MFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLA 87 (371)
Q Consensus 15 ~sp~g~~l~~~~~d~~~~~~~~~~-----~--~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (371)
+.....++.+-+.+++.+.+-... . ....+|+++.|+|... ....++.++.++++... .....
T Consensus 179 L~tt~~yi~s~s~~Lp~~tl~~krlkDaNa~~ps~~~I~sv~FHp~~p----lllvaG~d~~lrifqvD------Gk~N~ 248 (514)
T KOG2055|consen 179 LKTTVGYIDSRSKLLPPGTLNIKRLKDANAAHPSHGGITSVQFHPTAP----LLLVAGLDGTLRIFQVD------GKVNP 248 (514)
T ss_pred HHhhhcccccccccCCCceeeeEeecccccCCcCcCCceEEEecCCCc----eEEEecCCCcEEEEEec------CccCh
Confidence 455566666445555555543221 1 2256899999999554 44457888999998843 23444
Q ss_pred eeEeeeCccCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCC
Q 041206 88 TLMKLNGHKKAVTNVGLPSGSN-KLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAA 166 (371)
Q Consensus 88 ~~~~l~~h~~~V~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 166 (371)
.++.+.--..+|.+..|.|+|. .+++++.-..++.||+.+.+..+.-+..+. ...
T Consensus 249 ~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~------------------------e~~ 304 (514)
T KOG2055|consen 249 KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGV------------------------EEK 304 (514)
T ss_pred hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCc------------------------ccc
Confidence 6777777788999999999998 899999999999999998876554332111 122
Q ss_pred CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eEecccceeeeeCCCeEEEEEC
Q 041206 167 SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNL 243 (371)
Q Consensus 167 ~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~ 243 (371)
.+..+.++++ +|+..+..|.|.+....++ +.+.+++....|..++|+.|++ |++. +.+|.|.+||+
T Consensus 305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~----eli~s~KieG~v~~~~fsSdsk~l~~~-------~~~GeV~v~nl 373 (514)
T KOG2055|consen 305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTK----ELITSFKIEGVVSDFTFSSDSKELLAS-------GGTGEVYVWNL 373 (514)
T ss_pred hhheeEecCCCCeEEEcccCceEEeehhhhh----hhhheeeeccEEeeEEEecCCcEEEEE-------cCCceEEEEec
Confidence 3556666666 9999999999999999998 8888888877999999999997 7777 78999999999
Q ss_pred CCceEEEEeecCCCcEE--EEE--EcCCeEEEEeCCCcEEEEEccCCC------C----cceecceEEEEecCCCCEEEE
Q 041206 244 DNLECVQTLKGHSDTVT--SLL--FWDEYLFSSSLDETIKIWLYTHTK------N----NAELSSLFGMLDAEAKPVLFS 309 (371)
Q Consensus 244 ~~~~~~~~~~~~~~~v~--~~~--~~~~~l~s~~~dg~i~iwd~~~~~------~----~~~~~~~~~~~~~~~~~~l~~ 309 (371)
++..+++++.. .+.|. +++ .++.|||+|+..|.|.|||..... + ......+..+.+.++.++|+.
T Consensus 374 ~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAi 452 (514)
T KOG2055|consen 374 RQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAI 452 (514)
T ss_pred CCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhh
Confidence 99999998874 33333 334 338899999999999999954322 1 222356677777777778877
Q ss_pred ec--CCCeEEEEEcCCcceeeeecC----CceEEEEEeCCCC-eEEeeCCCCcEEEEEcc
Q 041206 310 SG--KDSAIRLYELPSFKLRARIFS----RREVEVDQIGPAG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 310 ~~--~d~~i~iwd~~~~~~~~~~~~----~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~ 362 (371)
++ ....+++-.+.+......+.. -+.|+|++|||.+ ++|.|..+|.+.+|.+.
T Consensus 453 aS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 453 ASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 76 457899999888776666653 4679999999998 99999999999999875
No 114
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=3e-22 Score=173.44 Aligned_cols=256 Identities=13% Similarity=0.138 Sum_probs=182.5
Q ss_pred eCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEEEeCCCeeE
Q 041206 63 YGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKL-YSGSRDGRVSVWDRDSGRCVNVITNGAEIG 141 (371)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 141 (371)
+++.++.++.|+ ..+.+.+..+.+|.. +.+++|+|+++.+ ++++.++.|++||..+++....+..+.
T Consensus 6 s~~~d~~v~~~d--------~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--- 73 (300)
T TIGR03866 6 SNEKDNTISVID--------TATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP--- 73 (300)
T ss_pred EecCCCEEEEEE--------CCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC---
Confidence 356778999999 345677888887654 6789999999876 567788999999999988776655322
Q ss_pred EEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEE-EEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecC
Q 041206 142 CLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLF-AGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSN 218 (371)
Q Consensus 142 ~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 218 (371)
.+..++++|+ .++ ++..++.+++||+.+. +.+..+.....+.+++++|
T Consensus 74 -------------------------~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~----~~~~~~~~~~~~~~~~~~~ 124 (300)
T TIGR03866 74 -------------------------DPELFALHPNGKILYIANEDDNLVTVIDIETR----KVLAEIPVGVEPEGMAVSP 124 (300)
T ss_pred -------------------------CccEEEECCCCCEEEEEcCCCCeEEEEECCCC----eEEeEeeCCCCcceEEECC
Confidence 1445677776 444 4456899999999886 5666665444678899999
Q ss_pred Cce-eEecccceeeeeCCC-eEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEE-EEeCCCcEEEEEccCCCCcceec
Q 041206 219 DTR-WNSKEEAAVFEFCGH-TTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLF-SSSLDETIKIWLYTHTKNNAELS 293 (371)
Q Consensus 219 ~~~-l~~~~~~~~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~-s~~~dg~i~iwd~~~~~~~~~~~ 293 (371)
++. ++++ ..++ .+.+||.++++.+..+.. ......++|+ +++|+ ++..++.|++||++..+....+.
T Consensus 125 dg~~l~~~-------~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~ 196 (300)
T TIGR03866 125 DGKIVVNT-------SETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKIT 196 (300)
T ss_pred CCCEEEEE-------ecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeee
Confidence 997 5555 5554 577889998877665543 2345678887 56664 55569999999987654321110
Q ss_pred -----------ceEEEEecCCCCE-EEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEee-CCCCcEEEE
Q 041206 294 -----------SLFGMLDAEAKPV-LFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPG-DASGSVGVW 359 (371)
Q Consensus 294 -----------~~~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~-~~dg~i~iw 359 (371)
....+.+.+++++ +++.+.++.+.+||+++++....+.+...+.+++|+|+| .|+++ +.+|.|++|
T Consensus 197 ~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~ 276 (300)
T TIGR03866 197 FEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVI 276 (300)
T ss_pred ecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEE
Confidence 0112223444445 444556778999999998887666666789999999999 77665 569999999
Q ss_pred Ecccccee
Q 041206 360 KWLLAEQQ 367 (371)
Q Consensus 360 ~~~~~~~~ 367 (371)
|+.+++..
T Consensus 277 d~~~~~~~ 284 (300)
T TIGR03866 277 DVAALKVI 284 (300)
T ss_pred ECCCCcEE
Confidence 99987753
No 115
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=7e-23 Score=163.49 Aligned_cols=260 Identities=13% Similarity=0.152 Sum_probs=199.8
Q ss_pred eeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCc
Q 041206 40 MFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGR 119 (371)
Q Consensus 40 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~ 119 (371)
...++|..+.|+|.+..+ ..+.-|+.+++++. ...++...++ |..++.+++|.+ ...+++|+.||.
T Consensus 11 pP~d~IS~v~f~~~~~~L----LvssWDgslrlYdv--------~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~ 76 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDL----LVSSWDGSLRLYDV--------PANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQ 76 (323)
T ss_pred CChhceeeEEEcCcCCcE----EEEeccCcEEEEec--------cchhhhhhee-cCCceeeeeccC-CceEEEeccCce
Confidence 346788899988754432 23568888999983 2224444454 999999999987 468999999999
Q ss_pred EEEEECCCCceEEEEeCCCeeEEEee---cCCEEEEecCCcEEEEEeCCC----------CeeEEEEeCCEEEEEeCCCe
Q 041206 120 VSVWDRDSGRCVNVITNGAEIGCLIS---EGSWVFLGLPNAVKSWRVNAA----------SVNALVVNNDLLFAGSEGGV 186 (371)
Q Consensus 120 v~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~----------~v~~~~~~~~~l~~~~~dg~ 186 (371)
|+.+|+.++.....-.+..++.|+.. .+..+..+.|++|++||.... .|.++....+.|++|+.+..
T Consensus 77 vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~ 156 (323)
T KOG1036|consen 77 VRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRK 156 (323)
T ss_pred EEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCce
Confidence 99999999998888888899999975 355666678999999999833 89999999999999999999
Q ss_pred EEEEeccCCCCcceeeEEEec--Cc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCc----eEEEEeecCCCc
Q 041206 187 ISVWKGTFVANPFKQVASIRA--PL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNL----ECVQTLKGHSDT 258 (371)
Q Consensus 187 v~iwd~~~~~~~~~~~~~~~~--~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~ 258 (371)
|.+||+++....+ ..+. .. .++|+++.|.+. ++++ +-||.|.+=.++.. +..+.|+.|...
T Consensus 157 v~iyDLRn~~~~~----q~reS~lkyqtR~v~~~pn~eGy~~s-------SieGRVavE~~d~s~~~~skkyaFkCHr~~ 225 (323)
T KOG1036|consen 157 VLIYDLRNLDEPF----QRRESSLKYQTRCVALVPNGEGYVVS-------SIEGRVAVEYFDDSEEAQSKKYAFKCHRLS 225 (323)
T ss_pred EEEEEcccccchh----hhccccceeEEEEEEEecCCCceEEE-------eecceEEEEccCCchHHhhhceeEEeeecc
Confidence 9999999885322 2222 23 899999999665 8888 99999998777654 334556666431
Q ss_pred EEEEEEcCCeEEEEeCCCcEEEEEccCCCCcceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecC-CceEE
Q 041206 259 VTSLLFWDEYLFSSSLDETIKIWLYTHTKNNAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFS-RREVE 337 (371)
Q Consensus 259 v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~ 337 (371)
.+++-.+ .++..+.+++-...|++|+.||.|.+||+.+.+.+.++.. ...|.
T Consensus 226 ---------------~~~~~~~------------yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~ 278 (323)
T KOG1036|consen 226 ---------------EKDTEII------------YPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSIS 278 (323)
T ss_pred ---------------cCCceEE------------EEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceE
Confidence 1222222 2445555555555899999999999999999888887765 46799
Q ss_pred EEEeCCCC-eEEeeC
Q 041206 338 VDQIGPAG-LFFPGD 351 (371)
Q Consensus 338 ~~~~s~~~-~l~~~~ 351 (371)
.++|+.+| .||+++
T Consensus 279 slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 279 SLSFSMDGSLLAIAS 293 (323)
T ss_pred EEEeccCCCeEEEEe
Confidence 99999999 888886
No 116
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.7e-24 Score=187.15 Aligned_cols=263 Identities=19% Similarity=0.292 Sum_probs=199.5
Q ss_pred CccCCeE---EEEEcC-CCCEEEEEeCCCcEEEEECCCCce------EEEEeCCCe-eEEE--eecC-CEEEEecCCcEE
Q 041206 94 GHKKAVT---NVGLPS-GSNKLYSGSRDGRVSVWDRDSGRC------VNVITNGAE-IGCL--ISEG-SWVFLGLPNAVK 159 (371)
Q Consensus 94 ~h~~~V~---~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~------~~~~~~~~~-~~~~--~~~~-~~~~~~~~~~i~ 159 (371)
.|...|. .+..++ .+++|+||+.||.|++|++..... +..+.++.. +..+ +.++ .++.+++|-+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 3555566 555554 677899999999999999875432 233333221 2222 2344 455567899999
Q ss_pred EEEeCCC-------------CeeEEEE-eCC--EEEEEeCCCeEEEEeccCCCC------cceeeEEEe-cCc-ceEEEE
Q 041206 160 SWRVNAA-------------SVNALVV-NND--LLFAGSEGGVISVWKGTFVAN------PFKQVASIR-APL-WFCSLS 215 (371)
Q Consensus 160 ~~~~~~~-------------~v~~~~~-~~~--~l~~~~~dg~v~iwd~~~~~~------~~~~~~~~~-~~~-~v~~~~ 215 (371)
+|+.+.+ .|.|+++ -++ .+++|+-|+.|.+||++++.. .......+. ++. +|.+++
T Consensus 99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA 178 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA 178 (735)
T ss_pred EeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence 9999876 6888888 444 999999999999999997732 012223333 666 999999
Q ss_pred ecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcce-
Q 041206 216 SSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAE- 291 (371)
Q Consensus 216 ~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~- 291 (371)
-++.+. +++| +..+.+++||.++++.+..+++|+..|..+..+ +..++++|.||+|++||+...+....
T Consensus 179 ~N~t~t~ivsG-------gtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~ 251 (735)
T KOG0308|consen 179 MNQTGTIIVSG-------GTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY 251 (735)
T ss_pred cCCcceEEEec-------CcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE
Confidence 999986 7888 999999999999999999999999999999998 78999999999999999988775322
Q ss_pred ---ecceEEEEecCCCCEEEEecCCCeEEEEEcCCcce-eeeecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEccc
Q 041206 292 ---LSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKL-RARIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 292 ---~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~ 363 (371)
-..+......+.-..+++|+.||.|..=|+++... ..-+....+|..+..+.+. -+-+++.|+.|+-|....
T Consensus 252 ~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 252 IVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred EeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 23455666667777899999999999999998543 3333457788888887544 446677899999997653
No 117
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.3e-23 Score=187.05 Aligned_cols=233 Identities=16% Similarity=0.210 Sum_probs=190.6
Q ss_pred eCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEE
Q 041206 93 NGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSG-RCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNAL 171 (371)
Q Consensus 93 ~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~ 171 (371)
.+|+..-+.++|.|+|++|++++.||.|++|+.... +...++. .++..|.++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~---------------------------~~g~~v~~i 62 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID---------------------------ISGELVSSI 62 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh---------------------------ccCceeEEE
Confidence 469999999999999999999999999999997655 2222222 123348888
Q ss_pred EEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEE
Q 041206 172 VVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECV 249 (371)
Q Consensus 172 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~ 249 (371)
+.....|++++.+++|.+|.+..+ +.-..+.... ++++++++.+|. ++.| +.|-.|++-++.+....
T Consensus 63 a~~s~~f~~~s~~~tv~~y~fps~----~~~~iL~Rftlp~r~~~v~g~g~~iaag-------sdD~~vK~~~~~D~s~~ 131 (933)
T KOG1274|consen 63 ACYSNHFLTGSEQNTVLRYKFPSG----EEDTILARFTLPIRDLAVSGSGKMIAAG-------SDDTAVKLLNLDDSSQE 131 (933)
T ss_pred eecccceEEeeccceEEEeeCCCC----CccceeeeeeccceEEEEecCCcEEEee-------cCceeEEEEeccccchh
Confidence 888889999999999999999887 4444455555 899999999997 7888 99999999999999999
Q ss_pred EEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcc-----------e-ecceEEEEecCCCCEEEEecCCCe
Q 041206 250 QTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNA-----------E-LSSLFGMLDAEAKPVLFSSGKDSA 315 (371)
Q Consensus 250 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~-----------~-~~~~~~~~~~~~~~~l~~~~~d~~ 315 (371)
+.+++|.++|.++.|+ +++||+.+-||+|++||+....... . -.......|.+.+..++..+.|+.
T Consensus 132 ~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~ 211 (933)
T KOG1274|consen 132 KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT 211 (933)
T ss_pred eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe
Confidence 9999999999999999 6899999999999999987654211 1 111222344444447778888999
Q ss_pred EEEEEcCCcceeeeecC---CceEEEEEeCCCC-eEEeeCCCCcEEEEEccc
Q 041206 316 IRLYELPSFKLRARIFS---RREVEVDQIGPAG-LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 316 i~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~ 363 (371)
|.+|+..+++....+.. ...+..++|+|+| +||+++.||.|.|||+++
T Consensus 212 Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 212 VKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 99999999998888763 4459999999999 999999999999999985
No 118
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=6.2e-24 Score=164.12 Aligned_cols=237 Identities=15% Similarity=0.160 Sum_probs=183.8
Q ss_pred eeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---EEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCC
Q 041206 91 KLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRC---VNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAAS 167 (371)
Q Consensus 91 ~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 167 (371)
.-.+|++.|..+.....|++||||+.|++|+|+.++++.. +.++.. |.++
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~G---------------------------h~GP 58 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTG---------------------------HSGP 58 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecC---------------------------CCCC
Confidence 3457999999999999999999999999999999987643 333433 7778
Q ss_pred eeEEEEeC-C---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce---eEecccceeeeeCCCeEE
Q 041206 168 VNALVVNN-D---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR---WNSKEEAAVFEFCGHTTR 239 (371)
Q Consensus 168 v~~~~~~~-~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~---l~~~~~~~~~~~~dg~i~ 239 (371)
|..++|-. . +|++++.||.|.||.-+++ .+.....+..|. .|++++|.|.+. |+++ +.||.|.
T Consensus 59 Vwqv~wahPk~G~iLAScsYDgkVIiWke~~g--~w~k~~e~~~h~~SVNsV~wapheygl~Laca-------sSDG~vs 129 (299)
T KOG1332|consen 59 VWKVAWAHPKFGTILASCSYDGKVIIWKEENG--RWTKAYEHAAHSASVNSVAWAPHEYGLLLACA-------SSDGKVS 129 (299)
T ss_pred eeEEeecccccCcEeeEeecCceEEEEecCCC--chhhhhhhhhhcccceeecccccccceEEEEe-------eCCCcEE
Confidence 99999954 3 9999999999999998887 346667788888 999999999763 8899 9999999
Q ss_pred EEECCCc---eEEEEeecCCCcEEEEEEcC----------------CeEEEEeCCCcEEEEEccCCC------Ccceecc
Q 041206 240 TWNLDNL---ECVQTLKGHSDTVTSLLFWD----------------EYLFSSSLDETIKIWLYTHTK------NNAELSS 294 (371)
Q Consensus 240 iwd~~~~---~~~~~~~~~~~~v~~~~~~~----------------~~l~s~~~dg~i~iwd~~~~~------~~~~~~~ 294 (371)
|.+.+.. ...+....|.-.|++++|.| ..|++|+.|..|+||+....+ ...+..-
T Consensus 130 vl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dw 209 (299)
T KOG1332|consen 130 VLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDW 209 (299)
T ss_pred EEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchh
Confidence 9988754 22344568999999999971 369999999999999987642 1222223
Q ss_pred eEEEEecCC----CCEEEEecCCCeEEEEEcCCcce--eeeec--CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccc
Q 041206 295 LFGMLDAEA----KPVLFSSGKDSAIRLYELPSFKL--RARIF--SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 295 ~~~~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~--~~~~~--~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~ 363 (371)
+..+.+.|. ..+|++++.||+|.||..+.... ..++. -...++.+.||+.| .|+.++.|+.|.+|.-..
T Consensus 210 VRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 210 VRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred hhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 333333322 34799999999999998763211 11222 25679999999999 999999999999998653
No 119
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=9.5e-23 Score=182.23 Aligned_cols=329 Identities=16% Similarity=0.168 Sum_probs=250.6
Q ss_pred ccCCCCcee-eccCc-------ccccceeEEEEE-eeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccC
Q 041206 14 KHSEGGETM-MSDDD-------DLMKGRAEEREE-MFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTN 84 (371)
Q Consensus 14 ~~sp~g~~l-~~~~~-------d~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (371)
.|..||+.+ |++.. |+...+++...+ .|..+|....+-+... ..++.+.|..++.|-+.. ..-
T Consensus 251 SFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep----Vl~ta~~DnSlk~~vfD~----~dg 322 (910)
T KOG1539|consen 251 SFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP----VLVTAGADNSLKVWVFDS----GDG 322 (910)
T ss_pred EeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc----eEeeccCCCceeEEEeeC----CCC
Confidence 477788754 44433 355666766655 8888888888877444 344567888899988642 112
Q ss_pred CceeeEeeeCccCCeEEEEEc-CCCCEEEEEeCCCcEEEEECCCCce---------------EEEEeC----CCeeEEEe
Q 041206 85 SLATLMKLNGHKKAVTNVGLP-SGSNKLYSGSRDGRVSVWDRDSGRC---------------VNVITN----GAEIGCLI 144 (371)
Q Consensus 85 ~~~~~~~l~~h~~~V~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~---------------~~~~~~----~~~~~~~~ 144 (371)
..+.++.-.||..+..|+.|. .++..+.+++.|++.+.+++..... +..... -.++..+.
T Consensus 323 ~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa 402 (910)
T KOG1539|consen 323 VPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFA 402 (910)
T ss_pred cchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeee
Confidence 246778888999999999998 5899999999999999998753211 111100 13345554
Q ss_pred ec-------CCEEEE-ecCCcEEEEEeCCC-----------------CeeEEEEe--CCEEEEEeCCCeEEEEeccCCCC
Q 041206 145 SE-------GSWVFL-GLPNAVKSWRVNAA-----------------SVNALVVN--NDLLFAGSEGGVISVWKGTFVAN 197 (371)
Q Consensus 145 ~~-------~~~~~~-~~~~~i~~~~~~~~-----------------~v~~~~~~--~~~l~~~~~dg~v~iwd~~~~~~ 197 (371)
+. .+.+++ -.+...+.|+.... .+++++.+ .++.+.|...|.|-+|++..+
T Consensus 403 ~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG-- 480 (910)
T KOG1539|consen 403 FENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG-- 480 (910)
T ss_pred cccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC--
Confidence 42 223333 45677888888765 45566555 458999999999999999998
Q ss_pred cceeeEEE---ecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEE
Q 041206 198 PFKQVASI---RAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLF 270 (371)
Q Consensus 198 ~~~~~~~~---~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 270 (371)
-....+ +.|. +|+.++...-++ ++++ +.+|.+..||..+..++..+.- ...+..+.++ ...++
T Consensus 481 --i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa-------~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a 550 (910)
T KOG1539|consen 481 --IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSA-------GADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLA 550 (910)
T ss_pred --eeecccccCccccCceeEEEecCCCceEEEc-------cCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhhhh
Confidence 556666 4677 999999998776 8899 9999999999999888877763 4567777777 67889
Q ss_pred EEeCCCcEEEEEccCCCC----cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-
Q 041206 271 SSSLDETIKIWLYTHTKN----NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG- 345 (371)
Q Consensus 271 s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~- 345 (371)
.+..|-.|+++|..+.+- .++...++.+.+++++++|++++.|++|++||+.++.++-.+.-+.++..+.|+|+|
T Consensus 551 ~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD 630 (910)
T KOG1539|consen 551 IALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGD 630 (910)
T ss_pred hhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCC
Confidence 999999999999876553 344556777788888889999999999999999999999999899999999999999
Q ss_pred eEEeeCCC-CcEEEEEcc
Q 041206 346 LFFPGDAS-GSVGVWKWL 362 (371)
Q Consensus 346 ~l~~~~~d-g~i~iw~~~ 362 (371)
+|||...| .-|++|.-.
T Consensus 631 ~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 631 FLATVHVDQNGIYLWSNK 648 (910)
T ss_pred EEEEEEecCceEEEEEch
Confidence 99999988 679999643
No 120
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=8.4e-23 Score=163.45 Aligned_cols=257 Identities=14% Similarity=0.160 Sum_probs=191.8
Q ss_pred cceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCC-
Q 041206 31 KGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSN- 109 (371)
Q Consensus 31 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~- 109 (371)
...++..+..|...|+++|.+- .| ..+|+.|-.|++++ .+....+..+-.|.+.|+++.|.++-.
T Consensus 32 ~l~~lF~~~aH~~sitavAVs~--~~----~aSGssDetI~IYD--------m~k~~qlg~ll~HagsitaL~F~~~~S~ 97 (362)
T KOG0294|consen 32 TLKPLFAFSAHAGSITALAVSG--PY----VASGSSDETIHIYD--------MRKRKQLGILLSHAGSITALKFYPPLSK 97 (362)
T ss_pred eeeccccccccccceeEEEecc--ee----EeccCCCCcEEEEe--------ccchhhhcceeccccceEEEEecCCcch
Confidence 3455778899999999998653 22 33588999999999 344566778888999999999998665
Q ss_pred -EEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCe
Q 041206 110 -KLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGV 186 (371)
Q Consensus 110 -~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~ 186 (371)
.|++|+.||.|.+|+...-.++.+++. |.+.|+.++++|. +.++.+.|+.
T Consensus 98 shLlS~sdDG~i~iw~~~~W~~~~slK~---------------------------H~~~Vt~lsiHPS~KLALsVg~D~~ 150 (362)
T KOG0294|consen 98 SHLLSGSDDGHIIIWRVGSWELLKSLKA---------------------------HKGQVTDLSIHPSGKLALSVGGDQV 150 (362)
T ss_pred hheeeecCCCcEEEEEcCCeEEeeeecc---------------------------cccccceeEecCCCceEEEEcCCce
Confidence 899999999999999999988888886 5667999999998 7778889999
Q ss_pred EEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc
Q 041206 187 ISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW 265 (371)
Q Consensus 187 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 265 (371)
++.||+-++. .-..++-....+.+.|+|.|. ++.+ ....|-+|.+.+-.....+.. ...+.++.|.
T Consensus 151 lr~WNLV~Gr----~a~v~~L~~~at~v~w~~~Gd~F~v~--------~~~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l 217 (362)
T KOG0294|consen 151 LRTWNLVRGR----VAFVLNLKNKATLVSWSPQGDHFVVS--------GRNKIDIYQLDNASVFREIEN-PKRILCATFL 217 (362)
T ss_pred eeeehhhcCc----cceeeccCCcceeeEEcCCCCEEEEE--------eccEEEEEecccHhHhhhhhc-cccceeeeec
Confidence 9999999883 333333333444599999886 5544 455788999887666555542 3557777777
Q ss_pred -CCeEEEEeCCCcEEEEEccCCC-------CcceecceEEEEecCCCCEEEEecCCCeEEEEEcCCc-----ceeeeecC
Q 041206 266 -DEYLFSSSLDETIKIWLYTHTK-------NNAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSF-----KLRARIFS 332 (371)
Q Consensus 266 -~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~ 332 (371)
+++|++|..|+.|++||-.... |...+..+..... +...+|++++.||.|++||++.. +++.++..
T Consensus 218 ~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~-~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~ 296 (362)
T KOG0294|consen 218 DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTN-PEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT 296 (362)
T ss_pred CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEec-CCceEEEEeccCceEEEEEccccccCCcceeEEeec
Confidence 8899999999999999966433 2333333333333 33459999999999999999876 45555555
Q ss_pred CceEEEEEeC
Q 041206 333 RREVEVDQIG 342 (371)
Q Consensus 333 ~~~v~~~~~s 342 (371)
...++|+...
T Consensus 297 ~~RltCl~~~ 306 (362)
T KOG0294|consen 297 NVRLTCLRVK 306 (362)
T ss_pred CCccceeeeh
Confidence 6667776654
No 121
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.9e-22 Score=159.17 Aligned_cols=239 Identities=15% Similarity=0.227 Sum_probs=174.7
Q ss_pred eCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEE
Q 041206 93 NGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALV 172 (371)
Q Consensus 93 ~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~ 172 (371)
.+|.+-|+++.|.+.|+++|||+.|++|+|||.++..-..... .-|..|.+.|..+.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~T-----------------------s~Wrah~~Si~rV~ 66 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCT-----------------------SSWRAHDGSIWRVV 66 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEe-----------------------eeEEecCCcEEEEE
Confidence 5799999999999999999999999999999976543222222 24777888999999
Q ss_pred EeCC----EEEEEeCCCeEEEEecc-----CCCCcceeeEEEecCc-ceEEEEecCCc---eeEecccceeeeeCCCeEE
Q 041206 173 VNND----LLFAGSEGGVISVWKGT-----FVANPFKQVASIRAPL-WFCSLSSSNDT---RWNSKEEAAVFEFCGHTTR 239 (371)
Q Consensus 173 ~~~~----~l~~~~~dg~v~iwd~~-----~~~~~~~~~~~~~~~~-~v~~~~~~~~~---~l~~~~~~~~~~~~dg~i~ 239 (371)
|-+. .+++++.|+++.||.=. .....+....++.... .|+.+.|.|.. +++++ +.||.++
T Consensus 67 WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~-------~aDG~lR 139 (361)
T KOG2445|consen 67 WAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAA-------SADGILR 139 (361)
T ss_pred ecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEe-------ccCcEEE
Confidence 9643 89999999999999642 2222345556666666 99999999964 38999 9999999
Q ss_pred EEECCCc------eEEEEee-------cCCCcEEEEEEc-----CCeEEEEeCC-----CcEEEEEccCCCC--------
Q 041206 240 TWNLDNL------ECVQTLK-------GHSDTVTSLLFW-----DEYLFSSSLD-----ETIKIWLYTHTKN-------- 288 (371)
Q Consensus 240 iwd~~~~------~~~~~~~-------~~~~~v~~~~~~-----~~~l~s~~~d-----g~i~iwd~~~~~~-------- 288 (371)
||+.-.. .+...++ .+..+..|+.|+ ..+|+.|+.+ +.++||.......
T Consensus 140 IYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L 219 (361)
T KOG2445|consen 140 IYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL 219 (361)
T ss_pred EEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhc
Confidence 9987542 2223333 456678899998 4578888766 4788998544331
Q ss_pred cceecceEEEEecCC----CCEEEEecCCCeEEEEEcCCc--------------------ceeeeec-CCceEEEEEeCC
Q 041206 289 NAELSSLFGMLDAEA----KPVLFSSGKDSAIRLYELPSF--------------------KLRARIF-SRREVEVDQIGP 343 (371)
Q Consensus 289 ~~~~~~~~~~~~~~~----~~~l~~~~~d~~i~iwd~~~~--------------------~~~~~~~-~~~~v~~~~~s~ 343 (371)
..+...+..+.+.|. ..+|++++.|| |+||.+... +.+..+. |..+|+.+.|+-
T Consensus 220 ~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm 298 (361)
T KOG2445|consen 220 PDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM 298 (361)
T ss_pred CCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee
Confidence 122223333333332 23789999999 999998741 1222222 577999999999
Q ss_pred CC-eEEeeCCCCcEEEEEcc
Q 041206 344 AG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 344 ~~-~l~~~~~dg~i~iw~~~ 362 (371)
.| .|++.+.||.||+|...
T Consensus 299 tGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 299 TGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eeeEEeecCCCceeeehhhh
Confidence 99 99999999999999864
No 122
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.5e-21 Score=167.47 Aligned_cols=226 Identities=16% Similarity=0.200 Sum_probs=173.6
Q ss_pred EEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccC-CeEEEEEcCCCCEEEEEeC
Q 041206 38 EEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKK-AVTNVGLPSGSNKLYSGSR 116 (371)
Q Consensus 38 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~-~V~~~~~~~~~~~l~s~~~ 116 (371)
+..-..+|.++|++....- ...+..++.|.+|+ ....+-+...+.|+++ .|.+++|+ ++.+|.|.+.
T Consensus 21 ~d~~Ps~I~slA~s~kS~~----lAvsRt~g~IEiwN-------~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~ 88 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYSHKSNQ----LAVSRTDGNIEIWN-------LSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGL 88 (691)
T ss_pred EeeeccceEEEEEeccCCc----eeeeccCCcEEEEc-------cCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecC
Confidence 4455678889998764332 33468889999999 5566777788888764 79999999 5568889899
Q ss_pred CCcEEEEECCCCceEEEEeC-CCeeEEEe--ecCCEEEEe-cCCcEEEEEe-------------CCCCeeEEEEeCC--E
Q 041206 117 DGRVSVWDRDSGRCVNVITN-GAEIGCLI--SEGSWVFLG-LPNAVKSWRV-------------NAASVNALVVNND--L 177 (371)
Q Consensus 117 dg~v~iwd~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~-~~~~i~~~~~-------------~~~~v~~~~~~~~--~ 177 (371)
+|.|.-||+.+++....+.. +..+.+++ +.++.++.+ .++.+..++. .++.|.+++|+++ .
T Consensus 89 sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~ 168 (691)
T KOG2048|consen 89 SGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK 168 (691)
T ss_pred CceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE
Confidence 99999999999999988876 45566554 456666665 5564444433 3448999999999 6
Q ss_pred EEEEeCCCeEEEEeccCCCCccee---eEEEec-Cc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEe
Q 041206 178 LFAGSEGGVISVWKGTFVANPFKQ---VASIRA-PL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTL 252 (371)
Q Consensus 178 l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~~-~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~ 252 (371)
++.|+.||.|++||...+...... +..+.. .. -|.++.+-.++.+++| ...|+|.+||...+.+++.+
T Consensus 169 i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sg-------DS~G~V~FWd~~~gTLiqS~ 241 (691)
T KOG2048|consen 169 IAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASG-------DSAGTVTFWDSIFGTLIQSH 241 (691)
T ss_pred EEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEe-------cCCceEEEEcccCcchhhhh
Confidence 999999999999999988431100 112222 23 6888999999999999 99999999999999988888
Q ss_pred ecCCCcEEEEEEc--CCeEEEEeCCCcEEEEE
Q 041206 253 KGHSDTVTSLLFW--DEYLFSSSLDETIKIWL 282 (371)
Q Consensus 253 ~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd 282 (371)
..|.+.|.+++.. ++++++++.|+.|..|.
T Consensus 242 ~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~ 273 (691)
T KOG2048|consen 242 SCHDADVLALAVADNEDRVFSAGVDPKIIQYS 273 (691)
T ss_pred hhhhcceeEEEEcCCCCeEEEccCCCceEEEE
Confidence 8888888888887 57888888888877665
No 123
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.5e-24 Score=190.80 Aligned_cols=226 Identities=19% Similarity=0.293 Sum_probs=176.4
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEECCC---CceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEE
Q 041206 98 AVTNVGLPS-GSNKLYSGSRDGRVSVWDRDS---GRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVV 173 (371)
Q Consensus 98 ~V~~~~~~~-~~~~l~s~~~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~ 173 (371)
.+..+.|.. +.++|||++..|.|.+||+.. .+.+..|. -|+..++++.|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~---------------------------EH~Rs~~~ldf 141 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFN---------------------------EHERSANKLDF 141 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhh---------------------------hhccceeeeee
Confidence 355677876 678999999999999999986 33333333 36667999999
Q ss_pred eCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc--eeEecccceeeeeCCCeEEEEECCCc-
Q 041206 174 NND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT--RWNSKEEAAVFEFCGHTTRTWNLDNL- 246 (371)
Q Consensus 174 ~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~--~l~~~~~~~~~~~~dg~i~iwd~~~~- 246 (371)
++. +|++|+.||.|++||++.. +-..++.+.. .|+.++|+|.. .++++ ...|.+++||++..
T Consensus 142 h~tep~iliSGSQDg~vK~~DlR~~----~S~~t~~~nSESiRDV~fsp~~~~~F~s~-------~dsG~lqlWDlRqp~ 210 (839)
T KOG0269|consen 142 HSTEPNILISGSQDGTVKCWDLRSK----KSKSTFRSNSESIRDVKFSPGYGNKFASI-------HDSGYLQLWDLRQPD 210 (839)
T ss_pred ccCCccEEEecCCCceEEEEeeecc----cccccccccchhhhceeeccCCCceEEEe-------cCCceEEEeeccCch
Confidence 865 9999999999999999998 6677777777 99999999943 48999 99999999999864
Q ss_pred eEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcc-----eecceEEEEe-cCCCCEEEEec--CCCeE
Q 041206 247 ECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNA-----ELSSLFGMLD-AEAKPVLFSSG--KDSAI 316 (371)
Q Consensus 247 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~-~~~~~~l~~~~--~d~~i 316 (371)
++...+.+|.++|.++.|+ ..+||||+.|+.|+|||....+... .+..+..+.+ |.....|++++ .|-.|
T Consensus 211 r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV 290 (839)
T KOG0269|consen 211 RCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSV 290 (839)
T ss_pred hHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceE
Confidence 4667888999999999999 4699999999999999988655422 1223333444 44455677765 47789
Q ss_pred EEEEcCCcceeeeec--CCceEEEEEeCCCC--eEEeeCCCCcEEEEEc
Q 041206 317 RLYELPSFKLRARIF--SRREVEVDQIGPAG--LFFPGDASGSVGVWKW 361 (371)
Q Consensus 317 ~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~--~l~~~~~dg~i~iw~~ 361 (371)
+|||++..-...... |...++.++|-... .+.+++.||.|..-.+
T Consensus 291 ~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 291 HVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred EEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhh
Confidence 999998866544443 67888999996633 9999999998865443
No 124
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.7e-23 Score=180.52 Aligned_cols=224 Identities=21% Similarity=0.289 Sum_probs=185.3
Q ss_pred ccCCCCceeeccCcc-------cccceeEEEEEe-eccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCC
Q 041206 14 KHSEGGETMMSDDDD-------LMKGRAEEREEM-FGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNS 85 (371)
Q Consensus 14 ~~sp~g~~l~~~~~d-------~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (371)
+++|+|.+||+|-.+ ....+.+..+.+ |...|.++++.. .....|..++.|..++. ...
T Consensus 224 ~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~------~~lssGsr~~~I~~~dv-------R~~ 290 (484)
T KOG0305|consen 224 KWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS------SVLSSGSRDGKILNHDV-------RIS 290 (484)
T ss_pred EECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccC------ceEEEecCCCcEEEEEE-------ecc
Confidence 479999999999766 445667777888 999999999884 22334788888888883 223
Q ss_pred ceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCC
Q 041206 86 LATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNA 165 (371)
Q Consensus 86 ~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 165 (371)
.....++++|...|..++|++|+++||+|+.|+.+.|||....+.+..+.. |+
T Consensus 291 ~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~---------------------------H~ 343 (484)
T KOG0305|consen 291 QHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTE---------------------------HT 343 (484)
T ss_pred hhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEec---------------------------cc
Confidence 333335999999999999999999999999999999999966665555543 56
Q ss_pred CCeeEEEEeCC---EEEEEe--CCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eEecccceeeeeCCCeEE
Q 041206 166 ASVNALVVNND---LLFAGS--EGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFCGHTTR 239 (371)
Q Consensus 166 ~~v~~~~~~~~---~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~ 239 (371)
..|.+++|+|- .||+|+ .|+.|++||..++ +.+..+.....|++|.|++..+ ++++ .|..++.|.
T Consensus 344 aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g----~~i~~vdtgsQVcsL~Wsk~~kEi~st-----hG~s~n~i~ 414 (484)
T KOG0305|consen 344 AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG----ARIDSVDTGSQVCSLIWSKKYKELLST-----HGYSENQIT 414 (484)
T ss_pred eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC----cEecccccCCceeeEEEcCCCCEEEEe-----cCCCCCcEE
Confidence 67999999987 888875 5899999999998 7888888777999999999875 5543 127788999
Q ss_pred EEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCC
Q 041206 240 TWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHT 286 (371)
Q Consensus 240 iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~ 286 (371)
||+..+.+.+..+.+|...|..++++ +..+++++.|.++++|++-..
T Consensus 415 lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 415 LWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 99999999999999999999999999 689999999999999996554
No 125
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=1.1e-21 Score=166.23 Aligned_cols=270 Identities=18% Similarity=0.260 Sum_probs=211.1
Q ss_pred eeEeeeCccCCeEEEEEcCCCCEEEEEeCCC--------cEEEEECCCCceEEEEeC-CCeeEEEee----cCCEEEE--
Q 041206 88 TLMKLNGHKKAVTNVGLPSGSNKLYSGSRDG--------RVSVWDRDSGRCVNVITN-GAEIGCLIS----EGSWVFL-- 152 (371)
Q Consensus 88 ~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg--------~v~iwd~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~-- 152 (371)
..+.+-||+..|.|++.+|+.-.+++|-.-| .+++||..+-..+..+.. ...+.|+.| .+.++..
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD 175 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVD 175 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEec
Confidence 4567889999999999999998888876555 499999888887777764 345777776 3555554
Q ss_pred -ecCCcEEEEEeCCC-----------CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc--ceEEEEe
Q 041206 153 -GLPNAVKSWRVNAA-----------SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL--WFCSLSS 216 (371)
Q Consensus 153 -~~~~~i~~~~~~~~-----------~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~ 216 (371)
+.+..+.+||...+ .|....|+|. .++.....|.+.+|+++.+.- .+....++.+. .|.|++|
T Consensus 176 ~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l-~k~~~~fek~ekk~Vl~v~F 254 (626)
T KOG2106|consen 176 DSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSL-VKRQGIFEKREKKFVLCVTF 254 (626)
T ss_pred CCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCce-EEEeeccccccceEEEEEEE
Confidence 45677899998765 4567788887 555555678999999987632 23444566665 8999999
Q ss_pred cCCceeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc-CCeEEEEeCCCcEEEEEccCCC--------
Q 041206 217 SNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW-DEYLFSSSLDETIKIWLYTHTK-------- 287 (371)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~-------- 287 (371)
.++|.+++| .++|.|.||+..+.+..++...|.+.|.+++.- +..|++|+.|..|..||-...+
T Consensus 255 ~engdviTg-------DS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe 327 (626)
T KOG2106|consen 255 LENGDVITG-------DSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPE 327 (626)
T ss_pred cCCCCEEee-------cCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCch
Confidence 999999999 999999999999988888777999999999988 6788889999999999911111
Q ss_pred C------------------------------------cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec
Q 041206 288 N------------------------------------NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF 331 (371)
Q Consensus 288 ~------------------------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 331 (371)
. .++...+..+...+...++++++.|+.+++|+ ..++.....
T Consensus 328 ~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~ 405 (626)
T KOG2106|consen 328 QFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI 405 (626)
T ss_pred hcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE
Confidence 0 11112334455566677899999999999999 556776666
Q ss_pred CCceEEEEEeCCCCeEEeeCCCCcEEEEEcccccee
Q 041206 332 SRREVEVDQIGPAGLFFPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 332 ~~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~~~~~~ 367 (371)
-..++.++.|+|.|.+|.|...|...+.|.++....
T Consensus 406 ~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv 441 (626)
T KOG2106|consen 406 IEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLV 441 (626)
T ss_pred ecCceeEeeccCcceEEEeeccceEEEEecccceeE
Confidence 788999999999999999999999999999886544
No 126
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=3.5e-22 Score=172.58 Aligned_cols=261 Identities=16% Similarity=0.215 Sum_probs=198.6
Q ss_pred eeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeec----CCEEEEecCCc-----
Q 041206 87 ATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISE----GSWVFLGLPNA----- 157 (371)
Q Consensus 87 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----- 157 (371)
.+-..++||++.|.+++..|.|.+|++|+.||+|+||.+.+|.|++++.....|.|+.++ ...++++....
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 455678999999999999999999999999999999999999999999998888888753 22333333222
Q ss_pred ----------------------------EEEEEeC---------------CCCeeEEEEeCC--EEEEEeCC---CeEEE
Q 041206 158 ----------------------------VKSWRVN---------------AASVNALVVNND--LLFAGSEG---GVISV 189 (371)
Q Consensus 158 ----------------------------i~~~~~~---------------~~~v~~~~~~~~--~l~~~~~d---g~v~i 189 (371)
+..|... ...|..+.|+.. +|++...+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 2233322 117888999876 88877654 56889
Q ss_pred EeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--
Q 041206 190 WKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW-- 265 (371)
Q Consensus 190 wd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-- 265 (371)
.++... .....|+... .+.++.|+|... |++ +....|+|||+...+.++.+......|.+++.+
T Consensus 551 HQLSK~----~sQ~PF~kskG~vq~v~FHPs~p~lfV--------aTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~ 618 (733)
T KOG0650|consen 551 HQLSKR----KSQSPFRKSKGLVQRVKFHPSKPYLFV--------ATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPN 618 (733)
T ss_pred Eecccc----cccCchhhcCCceeEEEecCCCceEEE--------EeccceEEEehhHHHHHHHHhcCCeeeeeeeecCC
Confidence 999887 4445555545 899999999764 444 356789999999888888777777788999988
Q ss_pred CCeEEEEeCCCcEEEEEccCCCC-----cceecceEEEEecCCCCEEEEecCCCeEEEEEcC------Ccc---eeeeec
Q 041206 266 DEYLFSSSLDETIKIWLYTHTKN-----NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELP------SFK---LRARIF 331 (371)
Q Consensus 266 ~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~------~~~---~~~~~~ 331 (371)
|..|+.++.|+.+..+|+..... ..+-..+..+.++..-+++++|+.||++.||.-. ..- ++..+.
T Consensus 619 GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~ 698 (733)
T KOG0650|consen 619 GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR 698 (733)
T ss_pred CCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeecc
Confidence 68999999999999999877642 2233455666677777799999999999998532 222 222222
Q ss_pred -C----CceEEEEEeCCCC-eEEeeCCCCcEEEE
Q 041206 332 -S----RREVEVDQIGPAG-LFFPGDASGSVGVW 359 (371)
Q Consensus 332 -~----~~~v~~~~~s~~~-~l~~~~~dg~i~iw 359 (371)
| .-.|..+.|+|.. +|++++.||+|++|
T Consensus 699 gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 699 GHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CceeecccceEeecccCCCceEEecCCCceEEee
Confidence 2 3457888999999 99999999999998
No 127
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=2.9e-22 Score=184.32 Aligned_cols=248 Identities=21% Similarity=0.307 Sum_probs=191.6
Q ss_pred ccCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceE---EEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCee
Q 041206 95 HKKAVTNVGLPSGSNKLYSGS--RDGRVSVWDRDSGRCV---NVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVN 169 (371)
Q Consensus 95 h~~~V~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~ 169 (371)
++..|.++..+|++..+|||+ .||.++||+.+.--.. .....+ ..+...+-|.+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~------------------k~l~~m~~h~~sv~ 73 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLP------------------KHLCTMDDHDGSVN 73 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccc------------------hhheeeccccCcee
Confidence 445799999999999999999 8999999996532100 000011 12233344778899
Q ss_pred EEEEeCC--EEEEEeCCCeEEEEeccCC--------------CCcceeeEEEecCc-ceEEEEecCCce-eEecccceee
Q 041206 170 ALVVNND--LLFAGSEGGVISVWKGTFV--------------ANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVF 231 (371)
Q Consensus 170 ~~~~~~~--~l~~~~~dg~v~iwd~~~~--------------~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~ 231 (371)
|+.|+++ +||+|+.|+.|.||..... ...++....+.+|. .|..++|+|++. ++++
T Consensus 74 CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~------ 147 (942)
T KOG0973|consen 74 CVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSV------ 147 (942)
T ss_pred EEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEe------
Confidence 9999999 9999999999999988730 02357888999999 999999999987 8999
Q ss_pred eeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC----------cceecceEEEE
Q 041206 232 EFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN----------NAELSSLFGML 299 (371)
Q Consensus 232 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~----------~~~~~~~~~~~ 299 (371)
+.|++|.||+.++.+.+..+++|...|..+.|+ ++||++-+.|++|++|+...-.. .....-+..+-
T Consensus 148 -s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlS 226 (942)
T KOG0973|consen 148 -SLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLS 226 (942)
T ss_pred -cccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecc
Confidence 999999999999999999999999999999999 89999999999999999443211 11111223334
Q ss_pred ecCCCCEEEEec----CCCeEEEEEcCCcceeeeec-CCceEEEEEeCCC--------C----------eEEeeCCCCcE
Q 041206 300 DAEAKPVLFSSG----KDSAIRLYELPSFKLRARIF-SRREVEVDQIGPA--------G----------LFFPGDASGSV 356 (371)
Q Consensus 300 ~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~--------~----------~l~~~~~dg~i 356 (371)
++|++.+|++.- .-.++.|.+-.+.+.-..+. |.+++.+++|+|. | .+|+|+.|++|
T Consensus 227 WSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSl 306 (942)
T KOG0973|consen 227 WSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSL 306 (942)
T ss_pred cCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccE
Confidence 555665887763 23478899988887555555 7889999999982 1 57899999999
Q ss_pred EEEEcccccee
Q 041206 357 GVWKWLLAEQQ 367 (371)
Q Consensus 357 ~iw~~~~~~~~ 367 (371)
.||.....++.
T Consensus 307 SVW~T~~~RPl 317 (942)
T KOG0973|consen 307 SVWNTALPRPL 317 (942)
T ss_pred EEEecCCCCch
Confidence 99998766553
No 128
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=8.8e-23 Score=170.29 Aligned_cols=200 Identities=22% Similarity=0.285 Sum_probs=162.3
Q ss_pred eCccCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEE
Q 041206 93 NGHKKAVTNVGLPS-GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNAL 171 (371)
Q Consensus 93 ~~h~~~V~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~ 171 (371)
.+|++.|.+++|+. -.+.|||||.|.+|++||+.++++..++.+ |+++|.++
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~---------------------------~~k~Vq~l 292 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITH---------------------------HGKKVQTL 292 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhh---------------------------cCCceeEE
Confidence 47999999999987 456899999999999999999999999885 45579999
Q ss_pred EEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce--eEecccceeeeeCCCeEEEEECCCc
Q 041206 172 VVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR--WNSKEEAAVFEFCGHTTRTWNLDNL 246 (371)
Q Consensus 172 ~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~iwd~~~~ 246 (371)
.|+|. .|++|+.|++|.+.|++... ..-..++....|..++|.|... ++++ +.||+++-+|+|..
T Consensus 293 ~wh~~~p~~LLsGs~D~~V~l~D~R~~~---~s~~~wk~~g~VEkv~w~~~se~~f~~~-------tddG~v~~~D~R~~ 362 (463)
T KOG0270|consen 293 EWHPYEPSVLLSGSYDGTVALKDCRDPS---NSGKEWKFDGEVEKVAWDPHSENSFFVS-------TDDGTVYYFDIRNP 362 (463)
T ss_pred EecCCCceEEEeccccceEEeeeccCcc---ccCceEEeccceEEEEecCCCceeEEEe-------cCCceEEeeecCCC
Confidence 99987 99999999999999999642 2223344444889999999763 8888 99999999999975
Q ss_pred -eEEEEeecCCCcEEEEEEc---CCeEEEEeCCCcEEEEEccCCCC------cceecceEEE-EecCCCCEEEEecCCCe
Q 041206 247 -ECVQTLKGHSDTVTSLLFW---DEYLFSSSLDETIKIWLYTHTKN------NAELSSLFGM-LDAEAKPVLFSSGKDSA 315 (371)
Q Consensus 247 -~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~-~~~~~~~~l~~~~~d~~ 315 (371)
+++.+++.|.++|.+++++ ++++++++.|+.+++|++..... ...+..+.+. ..+....+++.|+..+.
T Consensus 363 ~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~ 442 (463)
T KOG0270|consen 363 GKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAV 442 (463)
T ss_pred CCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccce
Confidence 8999999999999999998 78999999999999999765543 1222222222 33444457888998899
Q ss_pred EEEEEcCCcceeee
Q 041206 316 IRLYELPSFKLRAR 329 (371)
Q Consensus 316 i~iwd~~~~~~~~~ 329 (371)
++|||+.+...+.+
T Consensus 443 ~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 443 LRVWDIFTNSPVRK 456 (463)
T ss_pred EEEeecccChhHHH
Confidence 99999988766544
No 129
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=4e-22 Score=167.00 Aligned_cols=292 Identities=15% Similarity=0.202 Sum_probs=214.0
Q ss_pred cccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcC-C
Q 041206 29 LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPS-G 107 (371)
Q Consensus 29 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-~ 107 (371)
+...+.....+-+...|.+++|+|+..-- ....|+..+.|-+|++.. ..+...-+..+..|..+|.++.|+| +
T Consensus 173 l~~~~~~~v~kv~~~Rit~l~fHPt~~~~--lva~GdK~G~VG~Wn~~~----~~~d~d~v~~f~~hs~~Vs~l~F~P~n 246 (498)
T KOG4328|consen 173 LDDYRILNVAKVTDRRITSLAFHPTENRK--LVAVGDKGGQVGLWNFGT----QEKDKDGVYLFTPHSGPVSGLKFSPAN 246 (498)
T ss_pred cccceecceeEecccceEEEEecccCcce--EEEEccCCCcEEEEecCC----CCCccCceEEeccCCccccceEecCCC
Confidence 44455667788899999999999976610 123477888899999631 1344556788899999999999999 6
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCC
Q 041206 108 SNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGG 185 (371)
Q Consensus 108 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg 185 (371)
...+++.|.||+|++=|++++.....+.... ....+.++.++.+ .++.+..=|
T Consensus 247 ~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~-------------------------d~~~fs~~d~~~e~~~vl~~~~~G 301 (498)
T KOG4328|consen 247 TSQIYSSSYDGTIRLQDFEGNISEEVLSLDT-------------------------DNIWFSSLDFSAESRSVLFGDNVG 301 (498)
T ss_pred hhheeeeccCceeeeeeecchhhHHHhhcCc-------------------------cceeeeeccccCCCccEEEeeccc
Confidence 6789999999999999998775444333210 1112555666655 666777777
Q ss_pred eEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce--eEecccceeeeeCCCeEEEEECCCceE----EEEeecCCCc
Q 041206 186 VISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR--WNSKEEAAVFEFCGHTTRTWNLDNLEC----VQTLKGHSDT 258 (371)
Q Consensus 186 ~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~ 258 (371)
...+||++++. .....+..|. .|++++++|... ++++ +.|++++|||++.... +-....|...
T Consensus 302 ~f~~iD~R~~~---s~~~~~~lh~kKI~sv~~NP~~p~~laT~-------s~D~T~kIWD~R~l~~K~sp~lst~~Hrrs 371 (498)
T KOG4328|consen 302 NFNVIDLRTDG---SEYENLRLHKKKITSVALNPVCPWFLATA-------SLDQTAKIWDLRQLRGKASPFLSTLPHRRS 371 (498)
T ss_pred ceEEEEeecCC---ccchhhhhhhcccceeecCCCCchheeec-------ccCcceeeeehhhhcCCCCcceecccccce
Confidence 99999999885 3455677777 999999999764 8999 9999999999986332 2223359999
Q ss_pred EEEEEEc--CCeEEEEeCCCcEEEEEcc----CCC----------CcceecceEEEEecCCCCEEEEecCCCeEEEEEcC
Q 041206 259 VTSLLFW--DEYLFSSSLDETIKIWLYT----HTK----------NNAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELP 322 (371)
Q Consensus 259 v~~~~~~--~~~l~s~~~dg~i~iwd~~----~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 322 (371)
|.+..|+ +..|+|.+.|..|+|||.. ... ....++.+.+.+.+ +..++++|-.-..|-|+|-.
T Consensus 372 V~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P-~~~li~vg~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 372 VNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDP-DYNLIVVGRYPRPIDVFDGN 450 (498)
T ss_pred eeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCC-CccEEEEeccCcceeEEcCC
Confidence 9999999 4459999999999999963 111 12333444445555 55599999988899999999
Q ss_pred CcceeeeecC--CceEEE-EEeCCCC--eEEeeCCCCcEEEEEcc
Q 041206 323 SFKLRARIFS--RREVEV-DQIGPAG--LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 323 ~~~~~~~~~~--~~~v~~-~~~s~~~--~l~~~~~dg~i~iw~~~ 362 (371)
.++.+.++.. ...|.+ ..|+|-+ +++.++..|.|+||--+
T Consensus 451 ~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 451 GGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred CCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 9998888763 223443 4799987 55555678899998654
No 130
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.6e-21 Score=168.57 Aligned_cols=234 Identities=14% Similarity=0.193 Sum_probs=193.9
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEe
Q 041206 95 HKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVN 174 (371)
Q Consensus 95 h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~ 174 (371)
-..+|+++||+.+.+.||.+-.||.|-||++..+-.....-+.. ....|.+++|.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~-------------------------~drsIE~L~W~ 78 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGP-------------------------EDRSIESLAWA 78 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecC-------------------------CCCceeeEEEc
Confidence 35789999999999999999999999999999875544333221 23468999999
Q ss_pred CC-EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEE-
Q 041206 175 ND-LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQ- 250 (371)
Q Consensus 175 ~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~- 250 (371)
+. .|++.+.+|.|.-||+.+. ++...+.... .|.+++.+|.+. ++.| +.||.++.++...++..+
T Consensus 79 e~~RLFS~g~sg~i~EwDl~~l----k~~~~~d~~gg~IWsiai~p~~~~l~Ig-------cddGvl~~~s~~p~~I~~~ 147 (691)
T KOG2048|consen 79 EGGRLFSSGLSGSITEWDLHTL----KQKYNIDSNGGAIWSIAINPENTILAIG-------CDDGVLYDFSIGPDKITYK 147 (691)
T ss_pred cCCeEEeecCCceEEEEecccC----ceeEEecCCCcceeEEEeCCccceEEee-------cCCceEEEEecCCceEEEE
Confidence 76 9999999999999999999 7888888888 999999999885 8888 999988888888777653
Q ss_pred -EeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcc------------eecceEEEEecCCCCEEEEecCCCe
Q 041206 251 -TLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNA------------ELSSLFGMLDAEAKPVLFSSGKDSA 315 (371)
Q Consensus 251 -~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~d~~ 315 (371)
.|...++.|.++.|+ +..+++|+.||.|++||...+.... ....+.++.+-.++ .|++|..-|+
T Consensus 148 r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~ 226 (691)
T KOG2048|consen 148 RSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGT 226 (691)
T ss_pred eecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCce
Confidence 344556899999999 4579999999999999977665322 12234555555555 8999999999
Q ss_pred EEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccc
Q 041206 316 IRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 316 i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~ 365 (371)
|.+||...+.++..+. |.+.|.+++..+++ .+++++.|+.|.-|...+..
T Consensus 227 V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 227 VTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNK 278 (691)
T ss_pred EEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCc
Confidence 9999999999998877 78999999999998 99999999999988887654
No 131
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=1.1e-21 Score=166.79 Aligned_cols=275 Identities=18% Similarity=0.216 Sum_probs=193.9
Q ss_pred ceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeC-ccCCeEEEEEcCCCCE
Q 041206 32 GRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNG-HKKAVTNVGLPSGSNK 110 (371)
Q Consensus 32 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~~~~~~~ 110 (371)
+.....+++|+..|.++++.|.+. -.++|+.|-.++.|+|..- ...++..+.|.. ....|++++|++.+..
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~Ga----R~~sGs~Dy~v~~wDf~gM----das~~~fr~l~P~E~h~i~sl~ys~Tg~~ 228 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGA----RFVSGSLDYTVKFWDFQGM----DASMRSFRQLQPCETHQINSLQYSVTGDQ 228 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCc----eeeeccccceEEEEecccc----cccchhhhccCcccccccceeeecCCCCe
Confidence 344566899999999999888443 3345889999999997542 222233333432 3457999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeCC-------------CeeEEEee----cCCEEEEecCCcEEEEEeCCC-------
Q 041206 111 LYSGSRDGRVSVWDRDSGRCVNVITNG-------------AEIGCLIS----EGSWVFLGLPNAVKSWRVNAA------- 166 (371)
Q Consensus 111 l~s~~~dg~v~iwd~~~~~~~~~~~~~-------------~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~------- 166 (371)
|+..+.....+|+|-+..+.....+.. ..++|-++ .+.++.++.|+++++|++...
T Consensus 229 iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi 308 (641)
T KOG0772|consen 229 ILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI 308 (641)
T ss_pred EEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE
Confidence 888888889999996644444443321 22333333 256777889999999999765
Q ss_pred ----------CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc---ceEEEEecCCce-eEeccccee
Q 041206 167 ----------SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL---WFCSLSSSNDTR-WNSKEEAAV 230 (371)
Q Consensus 167 ----------~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~-l~~~~~~~~ 230 (371)
+++.++|+++ ++++|+.||.|.+|+....... .....-+.|. .|+|++|++||+ |++-
T Consensus 309 k~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~-p~~~vk~AH~~g~~Itsi~FS~dg~~LlSR----- 382 (641)
T KOG0772|consen 309 KTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR-PVMKVKDAHLPGQDITSISFSYDGNYLLSR----- 382 (641)
T ss_pred eeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc-cceEeeeccCCCCceeEEEeccccchhhhc-----
Confidence 7899999999 9999999999999998554221 1222333444 899999999997 8999
Q ss_pred eeeCCCeEEEEECCCc-eEEEEeecC--CCcEEEEEEc--CCeEEEEeC------CCcEEEEEccCCCCccee----cce
Q 041206 231 FEFCGHTTRTWNLDNL-ECVQTLKGH--SDTVTSLLFW--DEYLFSSSL------DETIKIWLYTHTKNNAEL----SSL 295 (371)
Q Consensus 231 ~~~~dg~i~iwd~~~~-~~~~~~~~~--~~~v~~~~~~--~~~l~s~~~------dg~i~iwd~~~~~~~~~~----~~~ 295 (371)
+.|+++++||++.. +++....+- ..+-+.++|+ .++|++|.. .|++.+||..+.+....+ ..+
T Consensus 383 --g~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSv 460 (641)
T KOG0772|consen 383 --GFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASV 460 (641)
T ss_pred --cCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceE
Confidence 99999999999974 455544432 2355678898 457777653 567999996665542222 233
Q ss_pred EEEEecCCCCEEEEecCCCeEEEEEcC
Q 041206 296 FGMLDAEAKPVLFSSGKDSAIRLYELP 322 (371)
Q Consensus 296 ~~~~~~~~~~~l~~~~~d~~i~iwd~~ 322 (371)
..+.|++.-+.|++|+.||.+++|--.
T Consensus 461 v~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 461 VRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred EEEeecchhhheeeecCCCceEEEECc
Confidence 444555555588889999999987433
No 132
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=6.5e-22 Score=161.96 Aligned_cols=249 Identities=20% Similarity=0.199 Sum_probs=180.1
Q ss_pred eeeEeeeCccCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeC
Q 041206 87 ATLMKLNGHKKAVTNVGLPSGS--NKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVN 164 (371)
Q Consensus 87 ~~~~~l~~h~~~V~~~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 164 (371)
..-...-+|.+.|+.+..++-+ .+.++=+..|.|.||++...- +.+... +-.+--.....+.-+..|
T Consensus 142 ~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l--~~l~~~---------~~~~~~s~~~Pl~t~~gh 210 (440)
T KOG0302|consen 142 QIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL--NALSEP---------GLEVKDSEFRPLFTFNGH 210 (440)
T ss_pred cccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhh--hhhcCc---------cccccccccCceEEeccc
Confidence 3344556789999999888754 456666789999999976321 111110 000011234566667778
Q ss_pred CCCeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc--eeEecccceeeeeCCCeE
Q 041206 165 AASVNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT--RWNSKEEAAVFEFCGHTT 238 (371)
Q Consensus 165 ~~~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~--~l~~~~~~~~~~~~dg~i 238 (371)
.+.=++++|+|- .|++|.--+.|++|...++.-. .-...+.+|. .|..++|+|.. .|++| +.||+|
T Consensus 211 k~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~-vd~~Pf~gH~~SVEDLqWSptE~~vfaSc-------S~DgsI 282 (440)
T KOG0302|consen 211 KGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWK-VDQRPFTGHTKSVEDLQWSPTEDGVFASC-------SCDGSI 282 (440)
T ss_pred CccceeeecccccccccccCccccceEeeeeccCcee-ecCccccccccchhhhccCCccCceEEee-------ecCceE
Confidence 888899999996 7889988899999998886422 1123566788 99999999965 48999 999999
Q ss_pred EEEECCCc---eEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcc-------eecceEEE-EecCCCC
Q 041206 239 RTWNLDNL---ECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNA-------ELSSLFGM-LDAEAKP 305 (371)
Q Consensus 239 ~iwd~~~~---~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~-------~~~~~~~~-~~~~~~~ 305 (371)
+|||++.+ .++.+ +.|.+.|+.+.|+ ..+|++|+.||+++|||++.-+... +...++++ +.|....
T Consensus 283 rIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s 361 (440)
T KOG0302|consen 283 RIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS 361 (440)
T ss_pred EEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc
Confidence 99999987 34444 7899999999999 3489999999999999988765421 22334444 4455566
Q ss_pred EEEEecCCCeEEEEEcCCcc-------------------eeeeecCCceEEEEEeCCCC--eEEeeCCCCc
Q 041206 306 VLFSSGKDSAIRLYELPSFK-------------------LRARIFSRREVEVDQIGPAG--LFFPGDASGS 355 (371)
Q Consensus 306 ~l~~~~~d~~i~iwd~~~~~-------------------~~~~~~~~~~v~~~~~s~~~--~l~~~~~dg~ 355 (371)
.|++++.|..|.+||+.... ++..-.....+..+.|++.- ++++.+.||-
T Consensus 362 ~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 362 VIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred eEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 89999999999999986421 11111236678899999976 8999888874
No 133
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=1.6e-22 Score=171.27 Aligned_cols=242 Identities=18% Similarity=0.285 Sum_probs=191.3
Q ss_pred eeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEe
Q 041206 87 ATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGR---CVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRV 163 (371)
Q Consensus 87 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 163 (371)
+.+++| .|..-|.++.++...++++||+. |.|+|||+.... .+..+.. +.
T Consensus 411 rq~~tL-~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdc------l~------------------- 463 (705)
T KOG0639|consen 411 RQINTL-AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDC------LN------------------- 463 (705)
T ss_pred Hhhhhh-ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccc------cC-------------------
Confidence 334444 48889999999999999999996 669999986431 1111111 10
Q ss_pred CCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEE
Q 041206 164 NAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTR 239 (371)
Q Consensus 164 ~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~ 239 (371)
...-+.++...|+ .|++|+.-.++.|||+..... .....+.... ....++.+||.+ .+++ ..||.|.
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp--rikaeltssapaCyALa~spDakvcFsc-------csdGnI~ 534 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP--RIKAELTSSAPACYALAISPDAKVCFSC-------CSDGNIA 534 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCc--chhhhcCCcchhhhhhhcCCccceeeee-------ccCCcEE
Confidence 1123777888887 999999999999999988742 2233344444 788899999998 6778 8999999
Q ss_pred EEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC---cceecceEEEEecCCCCEEEEecCCC
Q 041206 240 TWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN---NAELSSLFGMLDAEAKPVLFSSGKDS 314 (371)
Q Consensus 240 iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~d~ 314 (371)
|||+.+...++.|++|.+.+.|+..+ +..|.||+-|.++|.||++..+. ....+.+..+-..+.+.+++.|-.++
T Consensus 535 vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens 614 (705)
T KOG0639|consen 535 VWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENS 614 (705)
T ss_pred EEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccC
Confidence 99999999999999999999999999 88999999999999999988764 22234555566666677999999999
Q ss_pred eEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccc
Q 041206 315 AIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 315 ~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
.+.|......+.-.--.|.+-|.++.|.+-| ++++.+.|..+..|...-+
T Consensus 615 ~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 615 NVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred cEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccc
Confidence 9999888765555444578999999999999 9999999999999987654
No 134
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=7.8e-22 Score=165.27 Aligned_cols=250 Identities=18% Similarity=0.224 Sum_probs=193.0
Q ss_pred cCCceeeEeeeCccCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEE
Q 041206 83 TNSLATLMKLNGHKKAVTNVGLPSGS--NKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKS 160 (371)
Q Consensus 83 ~~~~~~~~~l~~h~~~V~~~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (371)
..........+-|.++|++++|+|.. +++|+|+.-|+|-+||+.+.+.. ...+.+
T Consensus 173 l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d-----------------------~d~v~~ 229 (498)
T KOG4328|consen 173 LDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD-----------------------KDGVYL 229 (498)
T ss_pred cccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc-----------------------cCceEE
Confidence 34455667778899999999999944 58899999999999999733321 124566
Q ss_pred EEeCCCCeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCC
Q 041206 161 WRVNAASVNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCG 235 (371)
Q Consensus 161 ~~~~~~~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~d 235 (371)
+..|+++|.++.|+|. .+++.+.||+|+.-|++.... +.+..+.... .+.++.++.+.. ++.+ ..=
T Consensus 230 f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~--e~v~s~~~d~~~fs~~d~~~e~~~vl~~-------~~~ 300 (498)
T KOG4328|consen 230 FTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNIS--EEVLSLDTDNIWFSSLDFSAESRSVLFG-------DNV 300 (498)
T ss_pred eccCCccccceEecCCChhheeeeccCceeeeeeecchhh--HHHhhcCccceeeeeccccCCCccEEEe-------ecc
Confidence 6778889999999987 999999999999999998621 3344444444 788899988775 6667 677
Q ss_pred CeEEEEECCCceE-EEEeecCCCcEEEEEEc---CCeEEEEeCCCcEEEEEccCCCCcce--------ecceEEE-EecC
Q 041206 236 HTTRTWNLDNLEC-VQTLKGHSDTVTSLLFW---DEYLFSSSLDETIKIWLYTHTKNNAE--------LSSLFGM-LDAE 302 (371)
Q Consensus 236 g~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~--------~~~~~~~-~~~~ 302 (371)
|...+||++++.. ...+.-|...|.+++++ +.+|+|++.|++.+|||++....... ...+... ++|.
T Consensus 301 G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs 380 (498)
T KOG4328|consen 301 GNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPS 380 (498)
T ss_pred cceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCC
Confidence 7999999998665 56667788899999999 67999999999999999877554331 1344444 4455
Q ss_pred CCCEEEEecCCCeEEEEEc----CCcceeeeecCC----c--eEEEEEeCCCC-eEEeeCCCCcEEEEEccccc
Q 041206 303 AKPVLFSSGKDSAIRLYEL----PSFKLRARIFSR----R--EVEVDQIGPAG-LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 303 ~~~~l~~~~~d~~i~iwd~----~~~~~~~~~~~~----~--~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~ 365 (371)
++ .|++.+.|..|+|||. ....+...+.|. . ......|.|+. ++++|-.-..|-|+|-..++
T Consensus 381 ~g-tl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 381 GG-TLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred CC-ceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 55 5999999999999998 445566666652 2 23456799988 99999999999999988776
No 135
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=6.2e-22 Score=166.25 Aligned_cols=206 Identities=18% Similarity=0.203 Sum_probs=169.7
Q ss_pred ccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEE
Q 041206 42 GFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVS 121 (371)
Q Consensus 42 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~ 121 (371)
.+.|.+++.+|+.+|+.+ |...+.|++|. ..+++++..+.+|-..|+|+.|+-|+.+|+|||.||.|.
T Consensus 81 Pg~v~al~s~n~G~~l~a----g~i~g~lYlWe--------lssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~ 148 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLA----GTISGNLYLWE--------LSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVL 148 (476)
T ss_pred ccceeeeecCCCceEEEe----ecccCcEEEEE--------eccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEE
Confidence 456778889998888762 23567899999 467899999999999999999999999999999999999
Q ss_pred EEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC----EEEEEeCCCeEEEEeccCCCC
Q 041206 122 VWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND----LLFAGSEGGVISVWKGTFVAN 197 (371)
Q Consensus 122 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~----~l~~~~~dg~v~iwd~~~~~~ 197 (371)
+|.+.+-- ...+.+ .-..++.|.-|+-+|+++...+. ++++++.|.++++||+..+
T Consensus 149 vW~l~~lv--~a~~~~----------------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-- 208 (476)
T KOG0646|consen 149 VWLLTDLV--SADNDH----------------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-- 208 (476)
T ss_pred EEEEEeec--ccccCC----------------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc--
Confidence 99864211 000000 12457788889999999998765 9999999999999999999
Q ss_pred cceeeEEEecCcceEEEEecCCce-eEecccceeeeeCCCeEEEEECCC----------------ceEEEEeecCCC--c
Q 041206 198 PFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDN----------------LECVQTLKGHSD--T 258 (371)
Q Consensus 198 ~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~----------------~~~~~~~~~~~~--~ 258 (371)
..+.++.....+.+++..|.++ +++| +.+|.|.+.++.+ +..+..+.+|.+ +
T Consensus 209 --~LLlti~fp~si~av~lDpae~~~yiG-------t~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ 279 (476)
T KOG0646|consen 209 --VLLLTITFPSSIKAVALDPAERVVYIG-------TEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESA 279 (476)
T ss_pred --eeeEEEecCCcceeEEEcccccEEEec-------CCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcc
Confidence 7888887777999999999876 8999 9999999988753 234567788988 9
Q ss_pred EEEEEEc--CCeEEEEeCCCcEEEEEccCCCC
Q 041206 259 VTSLLFW--DEYLFSSSLDETIKIWLYTHTKN 288 (371)
Q Consensus 259 v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~ 288 (371)
|+|++.+ +..|++|+.||++.|||+...+.
T Consensus 280 ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 280 ITCLAISTDGTLLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred eeEEEEecCccEEEeeCCCCCEEEEecchHHH
Confidence 9999998 89999999999999999766553
No 136
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=1.5e-21 Score=169.87 Aligned_cols=266 Identities=18% Similarity=0.193 Sum_probs=182.6
Q ss_pred CCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEE
Q 041206 64 GDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCL 143 (371)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 143 (371)
+..++.|.+++...-.. ..+...+.....|.+.|..+.|-|....|++++.|.++++||+.++++...-
T Consensus 70 adE~G~i~l~dt~~~~f--r~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~--------- 138 (720)
T KOG0321|consen 70 ADEDGGIILFDTKSIVF--RLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR--------- 138 (720)
T ss_pred ecCCCceeeecchhhhc--chhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce---------
Confidence 45566666666211100 0112224566789999999999997788999999999999999988876651
Q ss_pred eecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC---EEEEEeCCCeEEEEeccCCCC-------------------c---
Q 041206 144 ISEGSWVFLGLPNAVKSWRVNAASVNALVVNND---LLFAGSEGGVISVWKGTFVAN-------------------P--- 198 (371)
Q Consensus 144 ~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~-------------------~--- 198 (371)
++--|++.|.+++|.+. .+++|+.||.|.|||++-... +
T Consensus 139 ----------------~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp 202 (720)
T KOG0321|consen 139 ----------------LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKP 202 (720)
T ss_pred ----------------eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCch
Confidence 11126667888888766 899999999999999875430 0
Q ss_pred -ceeeEEEecCc-c----eEEEEecCCceeEecccceeeeeC-CCeEEEEECCCceEEEE--------eecC---CCcEE
Q 041206 199 -FKQVASIRAPL-W----FCSLSSSNDTRWNSKEEAAVFEFC-GHTTRTWNLDNLECVQT--------LKGH---SDTVT 260 (371)
Q Consensus 199 -~~~~~~~~~~~-~----v~~~~~~~~~~l~~~~~~~~~~~~-dg~i~iwd~~~~~~~~~--------~~~~---~~~v~ 260 (371)
.+.....+.+. . |+.+.|-.+..|+++ +. |+.|+|||+++...... +..| .-.+.
T Consensus 203 ~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSa-------ga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~ 275 (720)
T KOG0321|consen 203 LKKRIRKWKAASNTIFSSVTVVLFKDESTLASA-------GAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQV 275 (720)
T ss_pred hhccccccccccCceeeeeEEEEEeccceeeec-------cCCCcceEEEeecccccccccCCCcccCccCcccceeeeE
Confidence 01111122233 3 334444444458877 66 99999999997554322 2223 22455
Q ss_pred EEEEc--CCeEEEEeCCCcEEEEEccCCCC------ccee---cceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeee
Q 041206 261 SLLFW--DEYLFSSSLDETIKIWLYTHTKN------NAEL---SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRAR 329 (371)
Q Consensus 261 ~~~~~--~~~l~s~~~dg~i~iwd~~~~~~------~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 329 (371)
++..+ |.+|++.+.|+.|++|++..... .+.. ..+..+.++++ .++++|+.|...++|.+.+.+.-..
T Consensus 276 nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~e~~~~ 354 (720)
T KOG0321|consen 276 NLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSPEAPPA 354 (720)
T ss_pred EEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCC-ceEeccCCCcceeeeeecCccCChh
Confidence 66555 78888888899999999765442 1111 12333344444 4999999999999999988764433
Q ss_pred ec--CCceEEEEEeCCCC--eEEeeCCCCcEEEEEcccc
Q 041206 330 IF--SRREVEVDQIGPAG--LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 330 ~~--~~~~v~~~~~s~~~--~l~~~~~dg~i~iw~~~~~ 364 (371)
+. |...|++++|.|.. -++|++.|..++||++..+
T Consensus 355 ~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 355 LLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 33 68899999999976 8888899999999999654
No 137
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=6.3e-21 Score=152.84 Aligned_cols=268 Identities=13% Similarity=0.139 Sum_probs=192.2
Q ss_pred eeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 041206 45 LAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWD 124 (371)
Q Consensus 45 v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd 124 (371)
-.+..|++.+.+++..|. ++.+-+|++ .+...-+.|.+|..+|++++||+||+.|+|+|.|..|++||
T Consensus 26 a~~~~Fs~~G~~lAvGc~----nG~vvI~D~--------~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwD 93 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCA----NGRVVIYDF--------DTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWD 93 (405)
T ss_pred cceEEeccCcceeeeecc----CCcEEEEEc--------cccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEe
Confidence 456678998887775554 456788884 45567789999999999999999999999999999999999
Q ss_pred CCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCccee
Q 041206 125 RDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQ 201 (371)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~ 201 (371)
+..|.+++.+....+ |....|+|. .+++.--+..-.+.++..+.. ..
T Consensus 94 l~~gs~l~rirf~sp----------------------------v~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h--~~ 143 (405)
T KOG1273|consen 94 LLKGSPLKRIRFDSP----------------------------VWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH--SV 143 (405)
T ss_pred ccCCCceeEEEccCc----------------------------cceeeeccccCCeEEEEEecCCcEEEEecCCce--ee
Confidence 999999999987666 566666655 222222222233334333210 11
Q ss_pred eEEEe-c-Cc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCC-CcEEEEEEc--CCeEEEEeC
Q 041206 202 VASIR-A-PL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHS-DTVTSLLFW--DEYLFSSSL 274 (371)
Q Consensus 202 ~~~~~-~-~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~--~~~l~s~~~ 274 (371)
+..-. + .+ ...+..|.+.|+ +++| ...|.+.++|..+.+++..++-.. ..|..+.++ ++.|+.-+.
T Consensus 144 Lp~d~d~dln~sas~~~fdr~g~yIitG-------tsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts 216 (405)
T KOG1273|consen 144 LPKDDDGDLNSSASHGVFDRRGKYIITG-------TSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS 216 (405)
T ss_pred ccCCCccccccccccccccCCCCEEEEe-------cCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC
Confidence 10000 0 01 223345777776 8899 999999999999999998887655 788888887 899999999
Q ss_pred CCcEEEEEccCCCC----------------cceecceEEEEecCCCCEEEEec-CCCeEEEEEcCCcceeeeecC--Cce
Q 041206 275 DETIKIWLYTHTKN----------------NAELSSLFGMLDAEAKPVLFSSG-KDSAIRLYELPSFKLRARIFS--RRE 335 (371)
Q Consensus 275 dg~i~iwd~~~~~~----------------~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~--~~~ 335 (371)
|..||.|+++.-.. ......-.++++.++. ++++++ ....++||....|.++..+.+ ...
T Consensus 217 DRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge-Yv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~ 295 (405)
T KOG1273|consen 217 DRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE-YVCAGSARAHALYIWEKSIGSLVKILHGTKGEE 295 (405)
T ss_pred CceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc-EEEeccccceeEEEEecCCcceeeeecCCchhh
Confidence 99999999662111 0111122334555555 665554 556899999999999988875 357
Q ss_pred EEEEEeCCCC-eEEeeCCCCcEEEEEccc
Q 041206 336 VEVDQIGPAG-LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 336 v~~~~~s~~~-~l~~~~~dg~i~iw~~~~ 363 (371)
...+.|+|-. .+++- ..|.++||....
T Consensus 296 l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 296 LLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred eeecccccceeeeeec-cCCceEEEEeec
Confidence 8899999998 77777 789999998754
No 138
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=5.5e-22 Score=176.07 Aligned_cols=240 Identities=15% Similarity=0.192 Sum_probs=186.1
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC--CCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEE
Q 041206 95 HKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN--GAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALV 172 (371)
Q Consensus 95 h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~ 172 (371)
-+....+++.+++-..++.++. ..++|+.+........... ... .+..+ .+..+.
T Consensus 38 ~k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~k-------qn~~~---------------S~~DVk 94 (839)
T KOG0269|consen 38 LKAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTK-------QNKFY---------------SAADVK 94 (839)
T ss_pred cccccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccc-------cceee---------------ehhhcc
Confidence 4567888999998888888886 4688888775432221111 000 00000 245566
Q ss_pred EeC---CEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc--eeEecccceeeeeCCCeEEEEECCCc
Q 041206 173 VNN---DLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT--RWNSKEEAAVFEFCGHTTRTWNLDNL 246 (371)
Q Consensus 173 ~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~--~l~~~~~~~~~~~~dg~i~iwd~~~~ 246 (371)
|.. ++|++++..|.|.+||+..... .+.+..+..|. .++++.|++.. .|++| +.||.|++||++..
T Consensus 95 W~~~~~NlIAT~s~nG~i~vWdlnk~~r-nk~l~~f~EH~Rs~~~ldfh~tep~iliSG-------SQDg~vK~~DlR~~ 166 (839)
T KOG0269|consen 95 WGQLYSNLIATCSTNGVISVWDLNKSIR-NKLLTVFNEHERSANKLDFHSTEPNILISG-------SQDGTVKCWDLRSK 166 (839)
T ss_pred cccchhhhheeecCCCcEEEEecCcccc-chhhhHhhhhccceeeeeeccCCccEEEec-------CCCceEEEEeeecc
Confidence 653 3999999999999999987311 16677889999 99999999965 38999 99999999999999
Q ss_pred eEEEEeecCCCcEEEEEEc---CCeEEEEeCCCcEEEEEccCCCC-----cceecceEEEEecCCCCEEEEecCCCeEEE
Q 041206 247 ECVQTLKGHSDTVTSLLFW---DEYLFSSSLDETIKIWLYTHTKN-----NAELSSLFGMLDAEAKPVLFSSGKDSAIRL 318 (371)
Q Consensus 247 ~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i 318 (371)
+...++.+....|..+.|+ +++|+++...|.+++||++.+.. ..+.+.+.++-+.|++.+||+|+.|++|+|
T Consensus 167 ~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vki 246 (839)
T KOG0269|consen 167 KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKI 246 (839)
T ss_pred cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEE
Confidence 9999999999999999999 68999999999999999998764 333344555556667779999999999999
Q ss_pred EEcCCcc--eeeeecCCceEEEEEeCCCC--eEEeeC--CCCcEEEEEccccc
Q 041206 319 YELPSFK--LRARIFSRREVEVDQIGPAG--LFFPGD--ASGSVGVWKWLLAE 365 (371)
Q Consensus 319 wd~~~~~--~~~~~~~~~~v~~~~~s~~~--~l~~~~--~dg~i~iw~~~~~~ 365 (371)
||+.+.+ .+..+....+|..++|-|.. .|++++ .|-.|+|||+..+-
T Consensus 247 Wd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY 299 (839)
T KOG0269|consen 247 WDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY 299 (839)
T ss_pred EeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccc
Confidence 9998755 44445568899999999988 888887 47899999998653
No 139
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=4e-23 Score=181.94 Aligned_cols=226 Identities=22% Similarity=0.357 Sum_probs=190.8
Q ss_pred EeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCee
Q 041206 90 MKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVN 169 (371)
Q Consensus 90 ~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~ 169 (371)
+.+..|...|.++..-..++.+++|+.|-.+-+|.+..-..+..+. .|+.+|.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~---------------------------~hespIe 74 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLT---------------------------GHESPIE 74 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheee---------------------------ccCCcce
Confidence 4666799999999987788999999999999999987665554443 3667899
Q ss_pred EEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCC
Q 041206 170 ALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDN 245 (371)
Q Consensus 170 ~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~ 245 (371)
++.|+.. +|++|+.+|.|++||++.. +.+.++.+|. .+.++.|+|-+. .+.| +.|..+++||++.
T Consensus 75 Sl~f~~~E~LlaagsasgtiK~wDleeA----k~vrtLtgh~~~~~sv~f~P~~~~~a~g-------Stdtd~~iwD~Rk 143 (825)
T KOG0267|consen 75 SLTFDTSERLLAAGSASGTIKVWDLEEA----KIVRTLTGHLLNITSVDFHPYGEFFASG-------STDTDLKIWDIRK 143 (825)
T ss_pred eeecCcchhhhcccccCCceeeeehhhh----hhhhhhhccccCcceeeeccceEEeccc-------cccccceehhhhc
Confidence 9999987 8999999999999999998 8899999999 999999999886 6788 9999999999999
Q ss_pred ceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcc----eecceEEEEecCCCCEEEEecCCCeEEEE
Q 041206 246 LECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNA----ELSSLFGMLDAEAKPVLFSSGKDSAIRLY 319 (371)
Q Consensus 246 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 319 (371)
..+.+.+.+|...|..+.|. |.++++++.|.++++||++.++... +-..+..+-+.+...+++.|+.|+++++|
T Consensus 144 ~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~ 223 (825)
T KOG0267|consen 144 KGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFW 223 (825)
T ss_pred cCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeee
Confidence 89999999999999999999 6799999999999999986655321 11233333456666688999999999999
Q ss_pred EcCCcceeeeecC-CceEEEEEeCCCC-eEEeeCCC
Q 041206 320 ELPSFKLRARIFS-RREVEVDQIGPAG-LFFPGDAS 353 (371)
Q Consensus 320 d~~~~~~~~~~~~-~~~v~~~~~s~~~-~l~~~~~d 353 (371)
|+++.+.+..... ...|.+++|+|++ .+++|..+
T Consensus 224 dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 224 DLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 9999988877764 6789999999999 77777554
No 140
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=9e-21 Score=150.65 Aligned_cols=212 Identities=17% Similarity=0.216 Sum_probs=160.3
Q ss_pred eeCccCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeE
Q 041206 92 LNGHKKAVTNVGLPS-GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNA 170 (371)
Q Consensus 92 l~~h~~~V~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~ 170 (371)
.+.|.+.|+++...+ .|+++++|+.||.|.+||+++......-..-..-.|+. +.+ -=+.|.-.|.+
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v--------~~~----h~~~Hky~iss 106 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIV--------AKQ----HENGHKYAISS 106 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeec--------ccc----CCccceeeeee
Confidence 356889999999998 88999999999999999998653111000000000000 000 00123446888
Q ss_pred EEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCc----eeEecccceeeeeCCCeEEEEEC
Q 041206 171 LVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDT----RWNSKEEAAVFEFCGHTTRTWNL 243 (371)
Q Consensus 171 ~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~l~~~~~~~~~~~~dg~i~iwd~ 243 (371)
+.|-|- .+.+++.|.++++||.++. +....|+....|.+-+++|-. .+++| ..+-.|++.|+
T Consensus 107 ~~WyP~DtGmFtssSFDhtlKVWDtnTl----Q~a~~F~me~~VYshamSp~a~sHcLiA~g-------tr~~~VrLCDi 175 (397)
T KOG4283|consen 107 AIWYPIDTGMFTSSSFDHTLKVWDTNTL----QEAVDFKMEGKVYSHAMSPMAMSHCLIAAG-------TRDVQVRLCDI 175 (397)
T ss_pred eEEeeecCceeecccccceEEEeecccc----eeeEEeecCceeehhhcChhhhcceEEEEe-------cCCCcEEEEec
Confidence 888775 8999999999999999998 777777776688888888832 26777 89999999999
Q ss_pred CCceEEEEeecCCCcEEEEEEcC---CeEEEEeCCCcEEEEEccCCC-------------------CcceecceEEEEec
Q 041206 244 DNLECVQTLKGHSDTVTSLLFWD---EYLFSSSLDETIKIWLYTHTK-------------------NNAELSSLFGMLDA 301 (371)
Q Consensus 244 ~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~~~-------------------~~~~~~~~~~~~~~ 301 (371)
.+|..-+.+.+|.+.|.++.|++ -.|++|+.||.|++||++... ...+...+..+.+.
T Consensus 176 ~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t 255 (397)
T KOG4283|consen 176 ASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT 255 (397)
T ss_pred cCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence 99999999999999999999994 368899999999999966431 12223455666677
Q ss_pred CCCCEEEEecCCCeEEEEEcCCcce
Q 041206 302 EAKPVLFSSGKDSAIRLYELPSFKL 326 (371)
Q Consensus 302 ~~~~~l~~~~~d~~i~iwd~~~~~~ 326 (371)
.++.++++.+.|..+++|+..+++.
T Consensus 256 Sd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 256 SDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred ccchhhhhccCccceEEeecccCcc
Confidence 7777999999999999999988763
No 141
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1.1e-22 Score=179.10 Aligned_cols=226 Identities=19% Similarity=0.290 Sum_probs=180.2
Q ss_pred EeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCC
Q 041206 39 EMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDG 118 (371)
Q Consensus 39 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg 118 (371)
-.|+..+.++...... -....|+.+..+.+|.. .....+..|.+|+.+|.++.|++...+|++|+.+|
T Consensus 25 ~~hsaav~~lk~~~s~----r~~~~Gg~~~k~~L~~i--------~kp~~i~S~~~hespIeSl~f~~~E~Llaagsasg 92 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSS----RSLVTGGEDEKVNLWAI--------GKPNAITSLTGHESPIESLTFDTSERLLAAGSASG 92 (825)
T ss_pred hhhhhhhceeeeeccc----eeeccCCCceeeccccc--------cCCchhheeeccCCcceeeecCcchhhhcccccCC
Confidence 3566666665532211 12233677778888882 34455667999999999999999999999999999
Q ss_pred cEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCC
Q 041206 119 RVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVWKGTFVA 196 (371)
Q Consensus 119 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~ 196 (371)
+|++||++.++.++++.. |...+.++.|+|- +.+.|+.|+.+++||.+..
T Consensus 93 tiK~wDleeAk~vrtLtg---------------------------h~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~- 144 (825)
T KOG0267|consen 93 TIKVWDLEEAKIVRTLTG---------------------------HLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK- 144 (825)
T ss_pred ceeeeehhhhhhhhhhhc---------------------------cccCcceeeeccceEEeccccccccceehhhhcc-
Confidence 999999999988887765 3446888999998 7888999999999999976
Q ss_pred CcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEE
Q 041206 197 NPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSS 272 (371)
Q Consensus 197 ~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~ 272 (371)
.+...+.+|. .+..+.|+|+|+ ++.+ +.|..++|||+..|+.+..|+.|.+.+.++.|+ .-++++|
T Consensus 145 ---Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g-------~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~G 214 (825)
T KOG0267|consen 145 ---GCSHTYKSHTRVVDVLRLSPDGRWVASG-------GEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPG 214 (825)
T ss_pred ---CceeeecCCcceeEEEeecCCCceeecc-------CCcceeeeecccccccccccccccccccccccCchhhhhccC
Confidence 6888999998 999999999997 7888 889999999999999999999999999999999 3477899
Q ss_pred eCCCcEEEEEccCCCC----cceecceEEEEecCCCCEEEEecCCC
Q 041206 273 SLDETIKIWLYTHTKN----NAELSSLFGMLDAEAKPVLFSSGKDS 314 (371)
Q Consensus 273 ~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~d~ 314 (371)
+.|+++++||+++-+. ......+.+..+.+.+..+++|....
T Consensus 215 s~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 215 SSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 9999999999884331 22234555556666665677765543
No 142
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=1e-20 Score=155.06 Aligned_cols=221 Identities=19% Similarity=0.206 Sum_probs=171.4
Q ss_pred ceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccC--------CCCccCCceeeEeeeCccCCeEEEE
Q 041206 32 GRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVD--------GDNTTNSLATLMKLNGHKKAVTNVG 103 (371)
Q Consensus 32 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~~l~~h~~~V~~~~ 103 (371)
-++......|.+.++.+...+.. ....|..-+..+.+++|+..+- ........+++.++.+|...=++++
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~--~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~Ld 218 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLG--NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLD 218 (440)
T ss_pred ccccccccccccccceeeecccC--CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeee
Confidence 33444456788888877766643 2334444566778899986653 1222456788999999999999999
Q ss_pred EcC-CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC---EEE
Q 041206 104 LPS-GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND---LLF 179 (371)
Q Consensus 104 ~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~---~l~ 179 (371)
||| ..-.|+||..-+.|++|...+|.-...-.. +-.|+..|-.++|+|. .|+
T Consensus 219 WSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~P------------------------f~gH~~SVEDLqWSptE~~vfa 274 (440)
T KOG0302|consen 219 WSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRP------------------------FTGHTKSVEDLQWSPTEDGVFA 274 (440)
T ss_pred cccccccccccCccccceEeeeeccCceeecCcc------------------------ccccccchhhhccCCccCceEE
Confidence 999 334689998889999999887653221110 0115667999999987 999
Q ss_pred EEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCC---ceEEEEeec
Q 041206 180 AGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDN---LECVQTLKG 254 (371)
Q Consensus 180 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~---~~~~~~~~~ 254 (371)
+|+.||+|+|||++.+.. +.....+.|. .|+-+.|+..-. |++| +.||+++|||+++ ++++..|+.
T Consensus 275 ScS~DgsIrIWDiRs~~~--~~~~~~kAh~sDVNVISWnr~~~lLasG-------~DdGt~~iwDLR~~~~~~pVA~fk~ 345 (440)
T KOG0302|consen 275 SCSCDGSIRIWDIRSGPK--KAAVSTKAHNSDVNVISWNRREPLLASG-------GDDGTLSIWDLRQFKSGQPVATFKY 345 (440)
T ss_pred eeecCceEEEEEecCCCc--cceeEeeccCCceeeEEccCCcceeeec-------CCCceEEEEEhhhccCCCcceeEEe
Confidence 999999999999998754 3344458888 999999999765 8999 9999999999986 567889999
Q ss_pred CCCcEEEEEEc---CCeEEEEeCCCcEEEEEccCCC
Q 041206 255 HSDTVTSLLFW---DEYLFSSSLDETIKIWLYTHTK 287 (371)
Q Consensus 255 ~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~ 287 (371)
|..+|+++.|+ ...|++++.|.+|.+||+....
T Consensus 346 Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 346 HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 99999999999 5689999999999999976544
No 143
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=2.1e-18 Score=149.30 Aligned_cols=263 Identities=10% Similarity=0.052 Sum_probs=180.1
Q ss_pred cccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCC
Q 041206 29 LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGS 108 (371)
Q Consensus 29 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~ 108 (371)
...++.+..+..+. .+..++++|.+..+. ..+..++.+..|+ ..+++.+..+..+.. +..++|+|++
T Consensus 18 ~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~---~~~~~~~~v~~~d--------~~~~~~~~~~~~~~~-~~~~~~~~~g 84 (300)
T TIGR03866 18 TATLEVTRTFPVGQ-RPRGITLSKDGKLLY---VCASDSDTIQVID--------LATGEVIGTLPSGPD-PELFALHPNG 84 (300)
T ss_pred CCCCceEEEEECCC-CCCceEECCCCCEEE---EEECCCCeEEEEE--------CCCCcEEEeccCCCC-ccEEEECCCC
Confidence 44567777776543 466788887654321 1234567899999 344566666766544 5688999999
Q ss_pred CEEEEE-eCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCC
Q 041206 109 NKLYSG-SRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGG 185 (371)
Q Consensus 109 ~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg 185 (371)
+.++++ +.|+.|++||+.+++.+..+.... .+.+++++|+ .++++..++
T Consensus 85 ~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~----------------------------~~~~~~~~~dg~~l~~~~~~~ 136 (300)
T TIGR03866 85 KILYIANEDDNLVTVIDIETRKVLAEIPVGV----------------------------EPEGMAVSPDGKIVVNTSETT 136 (300)
T ss_pred CEEEEEcCCCCeEEEEECCCCeEEeEeeCCC----------------------------CcceEEECCCCCEEEEEecCC
Confidence 877654 568999999999887776665321 2567888887 677776654
Q ss_pred -eEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-e-EecccceeeeeCCCeEEEEECCCceEEEEeecCCC-----
Q 041206 186 -VISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-W-NSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSD----- 257 (371)
Q Consensus 186 -~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l-~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~----- 257 (371)
.+.+||..+. +............+++|+|+++ + +++ ..++.|++||+++++.+..+..+..
T Consensus 137 ~~~~~~d~~~~----~~~~~~~~~~~~~~~~~s~dg~~l~~~~-------~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~ 205 (300)
T TIGR03866 137 NMAHFIDTKTY----EIVDNVLVDQRPRFAEFTADGKELWVSS-------EIGGTVSVIDVATRKVIKKITFEIPGVHPE 205 (300)
T ss_pred CeEEEEeCCCC----eEEEEEEcCCCccEEEECCCCCEEEEEc-------CCCCEEEEEEcCcceeeeeeeecccccccc
Confidence 5677898776 4444443333567899999986 5 445 5699999999999988776653221
Q ss_pred --cEEEEEEc--CCeE-EEEeCCCcEEEEEccCCCCccee---cceEEEEecCCCCEEEEe-cCCCeEEEEEcCCcceee
Q 041206 258 --TVTSLLFW--DEYL-FSSSLDETIKIWLYTHTKNNAEL---SSLFGMLDAEAKPVLFSS-GKDSAIRLYELPSFKLRA 328 (371)
Q Consensus 258 --~v~~~~~~--~~~l-~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~ 328 (371)
....++|+ ++++ ++.+.++.+.+||++..+..... ..+..+.+.+++.+|+++ +.++.|++||+.+++.+.
T Consensus 206 ~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~ 285 (300)
T TIGR03866 206 AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIK 285 (300)
T ss_pred cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 23457777 4554 44456778999998765432111 223344555555577765 568999999999999998
Q ss_pred eecCCceEEEEEeCC
Q 041206 329 RIFSRREVEVDQIGP 343 (371)
Q Consensus 329 ~~~~~~~v~~~~~s~ 343 (371)
.+......+.++++|
T Consensus 286 ~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 286 SIKVGRLPWGVVVRP 300 (300)
T ss_pred EEEcccccceeEeCC
Confidence 888777779998876
No 144
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=2.9e-19 Score=157.12 Aligned_cols=281 Identities=19% Similarity=0.272 Sum_probs=203.3
Q ss_pred CccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceE--EEEeC-CC
Q 041206 65 DKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSN---KLYSGSRDGRVSVWDRDSGRCV--NVITN-GA 138 (371)
Q Consensus 65 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~--~~~~~-~~ 138 (371)
+....|.+|+ +.....+..++||.++|+|+.|-|+.+ ++++|+.|+.|++|.++..... .++.. ..
T Consensus 31 Ga~~~Iav~d--------p~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~ 102 (764)
T KOG1063|consen 31 GAGPAIAVAD--------PEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCK 102 (764)
T ss_pred cCCceEEEeC--------cccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcce
Confidence 4556778877 333456789999999999999999877 8999999999999999855443 34444 23
Q ss_pred eeEEEeecCCEEEE-ecCCcEEEEEeCCCCee---------------EEEEeC--C--EEEEEeCCCeEEEEeccCCCCc
Q 041206 139 EIGCLISEGSWVFL-GLPNAVKSWRVNAASVN---------------ALVVNN--D--LLFAGSEGGVISVWKGTFVANP 198 (371)
Q Consensus 139 ~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~v~---------------~~~~~~--~--~l~~~~~dg~v~iwd~~~~~~~ 198 (371)
.+.|+........+ +.++.+.+|+.+...+. |++..+ + .++.|+.+..|.++.-... .
T Consensus 103 ~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d--~ 180 (764)
T KOG1063|consen 103 ECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSAD--S 180 (764)
T ss_pred eEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCc--c
Confidence 34444433333333 67999999999666432 233333 3 6777888888888876633 4
Q ss_pred ceeeEEEecCc-ceEEEEecCCce----eEecccceeeeeCCCeEEEEECCCce---------------------EEE--
Q 041206 199 FKQVASIRAPL-WFCSLSSSNDTR----WNSKEEAAVFEFCGHTTRTWNLDNLE---------------------CVQ-- 250 (371)
Q Consensus 199 ~~~~~~~~~~~-~v~~~~~~~~~~----l~~~~~~~~~~~~dg~i~iwd~~~~~---------------------~~~-- 250 (371)
++.+..+.+|. .|.+++|...+. ++++ +.|..|+||.+.-+. .+.
T Consensus 181 f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~-------SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i 253 (764)
T KOG1063|consen 181 FARVAELEGHTDWIRSLAFARLGGDDLLLASS-------SQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEI 253 (764)
T ss_pred eeEEEEeeccchhhhhhhhhccCCCcEEEEec-------CCceEEEEEEEEecCCccccccccccccccCCceeeeeeeE
Confidence 58889999999 999999987542 7888 999999999875211 111
Q ss_pred --------EeecCCCcEEEEEEcC--CeEEEEeCCCcEEEEEccCCC-----------CcceecceEEEEecCCCCEEEE
Q 041206 251 --------TLKGHSDTVTSLLFWD--EYLFSSSLDETIKIWLYTHTK-----------NNAELSSLFGMLDAEAKPVLFS 309 (371)
Q Consensus 251 --------~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~ 309 (371)
.+.+|.+.|+++.|++ ..|++++.|.++.+|...... ..+.-.......+.+++..+++
T Consensus 254 ~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~ 333 (764)
T KOG1063|consen 254 QYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIA 333 (764)
T ss_pred EEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEE
Confidence 1248999999999993 479999999999999854432 1111122334445555568999
Q ss_pred ecCCCeEEEEEcCCcc-eee---eecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEcc
Q 041206 310 SGKDSAIRLYELPSFK-LRA---RIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 310 ~~~d~~i~iwd~~~~~-~~~---~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~ 362 (371)
-+.-|-.++|...... -.. .-.|...|.+++|+|.| +|++.+.|.+-|+|---
T Consensus 334 ~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 334 HGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW 391 (764)
T ss_pred ecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc
Confidence 9999999999943322 111 11267899999999999 99999999999998655
No 145
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.4e-20 Score=157.36 Aligned_cols=239 Identities=17% Similarity=0.170 Sum_probs=171.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceE-EEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC---EEEEEe
Q 041206 107 GSNKLYSGSRDGRVSVWDRDSGRCV-NVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND---LLFAGS 182 (371)
Q Consensus 107 ~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~---~l~~~~ 182 (371)
.|+++|.|..|..|.|||+.-...+ ..+..+....... ++ . ...-..=.-|+..|.+++|+.. .|++|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~--~k--~---~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgs 263 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKK--KK--K---GKRSNSASGHTDAVLALSWNRNFRNVLASGS 263 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhh--hh--h---cccccccccchHHHHHHHhccccceeEEecC
Confidence 3689999999999999998633211 1111110000000 00 0 0000000125667888888876 899999
Q ss_pred CCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc-e-eEecccceeeeeCCCeEEEEECCCceEE-EEeecCCCc
Q 041206 183 EGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT-R-WNSKEEAAVFEFCGHTTRTWNLDNLECV-QTLKGHSDT 258 (371)
Q Consensus 183 ~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~ 258 (371)
.|.+|++||+.++ ++..++..|. .|.++.|+|.. . |++| +.|++|.+.|.+..... ..++ -.+.
T Consensus 264 aD~TV~lWD~~~g----~p~~s~~~~~k~Vq~l~wh~~~p~~LLsG-------s~D~~V~l~D~R~~~~s~~~wk-~~g~ 331 (463)
T KOG0270|consen 264 ADKTVKLWDVDTG----KPKSSITHHGKKVQTLEWHPYEPSVLLSG-------SYDGTVALKDCRDPSNSGKEWK-FDGE 331 (463)
T ss_pred CCceEEEEEcCCC----CcceehhhcCCceeEEEecCCCceEEEec-------cccceEEeeeccCccccCceEE-eccc
Confidence 9999999999999 8888999888 99999999975 3 8999 99999999999953222 2333 4567
Q ss_pred EEEEEEc---CCeEEEEeCCCcEEEEEccCCC--------CcceecceEEEEecCCCCEEEEecCCCeEEEEEcCCccee
Q 041206 259 VTSLLFW---DEYLFSSSLDETIKIWLYTHTK--------NNAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLR 327 (371)
Q Consensus 259 v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 327 (371)
|-.++|+ +..++++..||+++-+|++... |...++.++ .+.....++++++.|+.|++|++..-...
T Consensus 332 VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~--~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 332 VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLS--VNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred eEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEE--ecCCCCcceeeccccceEEEEeecCCCCc
Confidence 8889998 6789999999999999999875 234444454 44444558999999999999999775543
Q ss_pred eeecC---CceEEEEEeCCCC--eEEeeCCCCcEEEEEccccce
Q 041206 328 ARIFS---RREVEVDQIGPAG--LFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 328 ~~~~~---~~~v~~~~~s~~~--~l~~~~~dg~i~iw~~~~~~~ 366 (371)
....+ -+...|.++.|+- .++.|+..+.++|||+.+...
T Consensus 410 ~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 410 SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred ccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 33322 3457788888887 999999999999999987643
No 146
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=7.1e-20 Score=147.61 Aligned_cols=282 Identities=16% Similarity=0.196 Sum_probs=202.8
Q ss_pred EEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeee--CccCCeEEEEEcCC----CCEE
Q 041206 38 EEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLN--GHKKAVTNVGLPSG----SNKL 111 (371)
Q Consensus 38 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~~~~~~~----~~~l 111 (371)
...|...|..++|.+..---....+.......+.+++...++ ....++.+. .|......++|+.+ ..+|
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~-----~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~l 108 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG-----GIRLLQSYADEDHDESFYTCSWSYDSNTGNPFL 108 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc-----ceeeeeeccCCCCCcceEEEEEEecCCCCCeeE
Confidence 456778888888875332222222223333456666633322 223444442 37778888888763 4579
Q ss_pred EEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC---EEEEEeCCCeEE
Q 041206 112 YSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND---LLFAGSEGGVIS 188 (371)
Q Consensus 112 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~---~l~~~~~dg~v~ 188 (371)
|.|+.-|.|+|.|+.++++...+.. |...|+.+.+.|. ++++++.|..|+
T Consensus 109 a~~G~~GvIrVid~~~~~~~~~~~g---------------------------hG~sINeik~~p~~~qlvls~SkD~svR 161 (385)
T KOG1034|consen 109 AAGGYLGVIRVIDVVSGQCSKNYRG---------------------------HGGSINEIKFHPDRPQLVLSASKDHSVR 161 (385)
T ss_pred EeecceeEEEEEecchhhhccceec---------------------------cCccchhhhcCCCCCcEEEEecCCceEE
Confidence 9999999999999999998888775 4456999999877 999999999999
Q ss_pred EEeccCCCCcceeeEEE---ecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceE---------------
Q 041206 189 VWKGTFVANPFKQVASI---RAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLEC--------------- 248 (371)
Q Consensus 189 iwd~~~~~~~~~~~~~~---~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~--------------- 248 (371)
+|++++. .++..+ .+|. .|.++.|++++. ++++ +.|.++++|++...+.
T Consensus 162 lwnI~~~----~Cv~VfGG~egHrdeVLSvD~~~~gd~i~Sc-------GmDhslk~W~l~~~~f~~~lE~s~~~~~~~t 230 (385)
T KOG1034|consen 162 LWNIQTD----VCVAVFGGVEGHRDEVLSVDFSLDGDRIASC-------GMDHSLKLWRLNVKEFKNKLELSITYSPNKT 230 (385)
T ss_pred EEeccCC----eEEEEecccccccCcEEEEEEcCCCCeeecc-------CCcceEEEEecChhHHhhhhhhhcccCCCCc
Confidence 9999998 666655 4677 999999999995 9999 9999999999983110
Q ss_pred ----------EE---EeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccC-CCC-------ccee----------cceEE
Q 041206 249 ----------VQ---TLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTH-TKN-------NAEL----------SSLFG 297 (371)
Q Consensus 249 ----------~~---~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~-------~~~~----------~~~~~ 297 (371)
.. +-.-|...|-|+.|-++++++=|-++.|..|.... .+. .... ..+..
T Consensus 231 ~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWf 310 (385)
T KOG1034|consen 231 TRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWF 310 (385)
T ss_pred cCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEE
Confidence 00 11347778888888899999999999999998622 111 0000 01111
Q ss_pred E--EecCCCCEEEEecCCCeEEEEEcCCcceee--eec---CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcc
Q 041206 298 M--LDAEAKPVLFSSGKDSAIRLYELPSFKLRA--RIF---SRREVEVDQIGPAG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 298 ~--~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~---~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~ 362 (371)
+ ...+-+..|+.|...|.|.+||++..++.. ++. ....|...+|+.|+ .|+..++|+.|.-||.-
T Consensus 311 irf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 311 IRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 1 222334589999999999999999876532 121 36789999999999 99999999999999864
No 147
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=3.7e-20 Score=156.90 Aligned_cols=256 Identities=17% Similarity=0.166 Sum_probs=192.0
Q ss_pred cceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 041206 43 FGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSV 122 (371)
Q Consensus 43 ~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~i 122 (371)
-++.++.++..++++. ...+.++.+.+|..... ..+...+..+.|. .-.|++......|+++|+..+.|+|
T Consensus 35 pg~~s~~w~~~n~lvv---as~~gdk~~~~~~K~g~----~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vki 105 (673)
T KOG4378|consen 35 PGDFSFNWQRRNFLVV---ASMAGDKVMRIKEKDGK----TPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKI 105 (673)
T ss_pred CcceeeeccccceEEE---eecCCceeEEEecccCC----CCccceeeccccc--hHHHHhhhhcceeeeccCcCceeee
Confidence 3477777777665433 23567889999983211 1122334444443 3345554445589999999999999
Q ss_pred EECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcce
Q 041206 123 WDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFK 200 (371)
Q Consensus 123 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~ 200 (371)
||++...+.+.++. |+..|+++.++.. +|++++..|.|.|..+.++ .
T Consensus 106 wdl~~kl~hr~lkd---------------------------h~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~----~ 154 (673)
T KOG4378|consen 106 WDLRAKLIHRFLKD---------------------------HQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK----Q 154 (673)
T ss_pred hhhHHHHHhhhccC---------------------------CcceeEEEEecCCcceeEEeccCCcEEEEecccC----c
Confidence 99996666665554 4446999999876 9999999999999999988 5
Q ss_pred eeEEEecCc--ceEEEEecCCce--eEecccceeeeeCCCeEEEEECCCceEEEEe-ecCCCcEEEEEEc---CCeEEEE
Q 041206 201 QVASIRAPL--WFCSLSSSNDTR--WNSKEEAAVFEFCGHTTRTWNLDNLECVQTL-KGHSDTVTSLLFW---DEYLFSS 272 (371)
Q Consensus 201 ~~~~~~~~~--~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~---~~~l~s~ 272 (371)
....|.... .|+-+.+++..+ |.++ +.+|.|.+||+....++..+ +.|..+...++|+ +.+|++.
T Consensus 155 ~tt~f~~~sgqsvRll~ys~skr~lL~~a-------sd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsV 227 (673)
T KOG4378|consen 155 KTTTFTIDSGQSVRLLRYSPSKRFLLSIA-------SDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSV 227 (673)
T ss_pred cccceecCCCCeEEEeecccccceeeEee-------ccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEe
Confidence 555666554 778999999775 6777 99999999999988776544 5799999999998 5689999
Q ss_pred eCCCcEEEEEccCCCCccee---cceEEEEecCCCCEEEEecCCCeEEEEEcCCcce-eeeec-CCceEEEEEeCCCC
Q 041206 273 SLDETIKIWLYTHTKNNAEL---SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKL-RARIF-SRREVEVDQIGPAG 345 (371)
Q Consensus 273 ~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~-~~~~v~~~~~s~~~ 345 (371)
+.|.+|.+||.+.......+ ..+..+.+.+++.+|++|...|.|..||++..+. +..+. |...|++++|-|..
T Consensus 228 G~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 228 GYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 99999999998876643322 3455567778888999999999999999998654 33333 57789999997764
No 148
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.86 E-value=3.1e-19 Score=155.69 Aligned_cols=191 Identities=15% Similarity=0.178 Sum_probs=139.7
Q ss_pred CeeEEEEeCC---EEEEEeCCCeEEEEeccCCCC---cceeeEEEecCc-ceEEEEecCCc--eeEecccceeeeeCCCe
Q 041206 167 SVNALVVNND---LLFAGSEGGVISVWKGTFVAN---PFKQVASIRAPL-WFCSLSSSNDT--RWNSKEEAAVFEFCGHT 237 (371)
Q Consensus 167 ~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~-~v~~~~~~~~~--~l~~~~~~~~~~~~dg~ 237 (371)
.|+.+.|+|- .|++++.||.|++|.+..+.. ...+...+..|. .|+++.|+|=. .|+++ +.|-+
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~a-------syd~T 701 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVA-------SYDST 701 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhh-------hccce
Confidence 6888999875 999999999999999876532 235667788898 99999999943 37788 99999
Q ss_pred EEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC-----ccee-cceEEEEecCCCCEEEE
Q 041206 238 TRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN-----NAEL-SSLFGMLDAEAKPVLFS 309 (371)
Q Consensus 238 i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~-----~~~~-~~~~~~~~~~~~~~l~~ 309 (371)
|++||+++++....+.+|.+.|.+++|+ ++.+++.+.||+|++|..+..+. .+.. ..-..+.+.-+++++++
T Consensus 702 i~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv 781 (1012)
T KOG1445|consen 702 IELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIV 781 (1012)
T ss_pred eeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEE
Confidence 9999999999999999999999999999 78999999999999999776553 1111 11222333344446666
Q ss_pred ecCC----CeEEEEEcCCcc--eeeeecCC--ceEEEEEeCCCC--eEEeeCCCCcEEEEEcccc
Q 041206 310 SGKD----SAIRLYELPSFK--LRARIFSR--REVEVDQIGPAG--LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 310 ~~~d----~~i~iwd~~~~~--~~~~~~~~--~~v~~~~~s~~~--~l~~~~~dg~i~iw~~~~~ 364 (371)
.+.| ..|.+||..+-. .+....-+ -.+.-=.+.+|. +|++|-.|..|.+|++-..
T Consensus 782 ~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 782 VGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred ecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCC
Confidence 6554 467888876532 22222111 111111244555 8999999999999998654
No 149
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.86 E-value=1.5e-20 Score=147.16 Aligned_cols=268 Identities=18% Similarity=0.211 Sum_probs=185.2
Q ss_pred ceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC--CCeeEEEe--ecCCEEEEecCCcEEEE
Q 041206 86 LATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN--GAEIGCLI--SEGSWVFLGLPNAVKSW 161 (371)
Q Consensus 86 ~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~i~~~ 161 (371)
..+...|++|.+.|+++.|..++ +|.+|..-|.|++|++.+......+.. ...+..+. +++....-+.|..+..|
T Consensus 4 PdP~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 4 PDPFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILW 82 (323)
T ss_pred CCCeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEE
Confidence 34677888999999999998776 599999999999999999887777662 34555554 33445555788899999
Q ss_pred EeCCC---CeeEEEE-----eCCEEEEEeCCC-eEEEEeccCCCC------c-ceeeEEEec----Cc-ceEEEEecCC-
Q 041206 162 RVNAA---SVNALVV-----NNDLLFAGSEGG-VISVWKGTFVAN------P-FKQVASIRA----PL-WFCSLSSSND- 219 (371)
Q Consensus 162 ~~~~~---~v~~~~~-----~~~~l~~~~~dg-~v~iwd~~~~~~------~-~~~~~~~~~----~~-~v~~~~~~~~- 219 (371)
++..+ .+.++.. .+.-+...+... ..-.|+-+.... . ...+..... .. .+.|..+..+
T Consensus 83 ~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c 162 (323)
T KOG0322|consen 83 TIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHAC 162 (323)
T ss_pred EccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccc
Confidence 98765 3333333 333333333333 233333332211 0 000111111 11 4555554332
Q ss_pred c-e--eEecccceeeeeCCCeEEEEECCCceE----------EEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEcc
Q 041206 220 T-R--WNSKEEAAVFEFCGHTTRTWNLDNLEC----------VQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYT 284 (371)
Q Consensus 220 ~-~--l~~~~~~~~~~~~dg~i~iwd~~~~~~----------~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~ 284 (371)
+ + +++| .++|.+.+||+.++.. ......|..+|.++.|. -+.=++++.+..+..|++.
T Consensus 163 ~s~~lllaG-------yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~ 235 (323)
T KOG0322|consen 163 GSTFLLLAG-------YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLN 235 (323)
T ss_pred cceEEEEEe-------ccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeec
Confidence 2 2 5677 9999999999998743 33445689999999998 3456778888889999976
Q ss_pred CCCCcce--------ecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCC
Q 041206 285 HTKNNAE--------LSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASG 354 (371)
Q Consensus 285 ~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg 354 (371)
.....-. --.+..+...++++++++++.|+.||||..++..++..+. |...|++++|+|+. .+|+++.|+
T Consensus 236 ~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~ 315 (323)
T KOG0322|consen 236 HSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDA 315 (323)
T ss_pred cccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCc
Confidence 5421100 0133344555666799999999999999999999998887 78999999999997 999999999
Q ss_pred cEEEEEc
Q 041206 355 SVGVWKW 361 (371)
Q Consensus 355 ~i~iw~~ 361 (371)
.|.+|++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999986
No 150
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=8.3e-21 Score=175.67 Aligned_cols=245 Identities=17% Similarity=0.228 Sum_probs=187.7
Q ss_pred eeeEeeeCccCCeEEEEEcCCCCE----EEEEeCCCcEEEEECCCC---ceEEEEeCCCeeEEEeecCCEEEEecCCcEE
Q 041206 87 ATLMKLNGHKKAVTNVGLPSGSNK----LYSGSRDGRVSVWDRDSG---RCVNVITNGAEIGCLISEGSWVFLGLPNAVK 159 (371)
Q Consensus 87 ~~~~~l~~h~~~V~~~~~~~~~~~----l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (371)
+.+..+. -..+.+.++|.+.+.. +|.|..||.|.+||...- .... .+.
T Consensus 56 k~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~------------------------~la 110 (1049)
T KOG0307|consen 56 KPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEE------------------------VLA 110 (1049)
T ss_pred ccccccc-ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchH------------------------HHh
Confidence 4455554 3456899999987665 888899999999997652 1111 222
Q ss_pred EEEeCCCCeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce--eEecccceeeee
Q 041206 160 SWRVNAASVNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR--WNSKEEAAVFEF 233 (371)
Q Consensus 160 ~~~~~~~~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~--l~~~~~~~~~~~ 233 (371)
-.+.|++.|..+.|++. .|++|+.+|.|.|||+.+...++..- -.... .|.+++|+..-. |+++ +
T Consensus 111 ~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~--~~~~~~eI~~lsWNrkvqhILAS~-------s 181 (1049)
T KOG0307|consen 111 TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG--SQAPPSEIKCLSWNRKVSHILASG-------S 181 (1049)
T ss_pred hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC--CCCCcccceEeccchhhhHHhhcc-------C
Confidence 34458889999999976 99999999999999999874332222 11123 899999999654 8888 9
Q ss_pred CCCeEEEEECCCceEEEEeecCCC--cEEEEEEcC---CeEEEEeCCC---cEEEEEccCCCC-----cceecceEEE-E
Q 041206 234 CGHTTRTWNLDNLECVQTLKGHSD--TVTSLLFWD---EYLFSSSLDE---TIKIWLYTHTKN-----NAELSSLFGM-L 299 (371)
Q Consensus 234 ~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~---~~l~s~~~dg---~i~iwd~~~~~~-----~~~~~~~~~~-~ 299 (371)
.+|.+.|||++..+.+-.+..+.. .+..++|++ ..+++++.|. .|.+||++.... ..+...+..+ +
T Consensus 182 ~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsW 261 (1049)
T KOG0307|consen 182 PSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSW 261 (1049)
T ss_pred CCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeecc
Confidence 999999999999888877766554 477899994 4666666554 699999887553 1233333333 5
Q ss_pred ecCCCCEEEEecCCCeEEEEEcCCcceeeeecC-CceEEEEEeCCCC--eEEeeCCCCcEEEEEccccc
Q 041206 300 DAEAKPVLFSSGKDSAIRLYELPSFKLRARIFS-RREVEVDQIGPAG--LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 300 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~--~l~~~~~dg~i~iw~~~~~~ 365 (371)
.+.+..++++++.|+.|.+|+.++++.+.++.. .+.+..+.|+|.. .+++.+-||.|.||.+....
T Consensus 262 c~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 262 CPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 566667999999999999999999999999884 6789999999988 99999999999999997653
No 151
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=9.2e-19 Score=140.05 Aligned_cols=234 Identities=12% Similarity=0.129 Sum_probs=177.6
Q ss_pred EeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcC--CCCEEEEEeC
Q 041206 39 EMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPS--GSNKLYSGSR 116 (371)
Q Consensus 39 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~--~~~~l~s~~~ 116 (371)
.+|.+-|.++.|.+.+.-. .+.+.++.+++|++.. ...+..+....+.|.+.|..+.|.+ -|+.+|+++.
T Consensus 10 s~h~DlihdVs~D~~GRRm----AtCSsDq~vkI~d~~~----~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~ 81 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRM----ATCSSDQTVKIWDSTS----DSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY 81 (361)
T ss_pred cCCcceeeeeeecccCcee----eeccCCCcEEEEeccC----CCCceEEeeeEEecCCcEEEEEecCccccceEEEEec
Confidence 4688888888887755532 2356788899999422 3456778889999999999999965 7899999999
Q ss_pred CCcEEEEECCCCc---------eEEEEe-CCCeeEEEeec----CCEE-EEecCCcEEEEEeCCC---------------
Q 041206 117 DGRVSVWDRDSGR---------CVNVIT-NGAEIGCLISE----GSWV-FLGLPNAVKSWRVNAA--------------- 166 (371)
Q Consensus 117 dg~v~iwd~~~~~---------~~~~~~-~~~~~~~~~~~----~~~~-~~~~~~~i~~~~~~~~--------------- 166 (371)
|++++||.-...+ ...++. ....+..+.|. +-.+ +++.|+.+++|+.-.-
T Consensus 82 Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~ 161 (361)
T KOG2445|consen 82 DRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV 161 (361)
T ss_pred CCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhc
Confidence 9999999752111 122222 24556666653 3334 4478999999987443
Q ss_pred ---------CeeEEEEeCC-----EEEEEeCC-----CeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCC-ce----
Q 041206 167 ---------SVNALVVNND-----LLFAGSEG-----GVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSND-TR---- 221 (371)
Q Consensus 167 ---------~v~~~~~~~~-----~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~-~~---- 221 (371)
+..|+.|++. +|++|+.+ +.++||........+..+.++.+|. +|+.++|.|. |+
T Consensus 162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~ 241 (361)
T KOG2445|consen 162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHL 241 (361)
T ss_pred cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceee
Confidence 5678889876 78888766 5899999888776667888888999 9999999995 22
Q ss_pred eEecccceeeeeCCCeEEEEECCC--------------------ceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEE
Q 041206 222 WNSKEEAAVFEFCGHTTRTWNLDN--------------------LECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIK 279 (371)
Q Consensus 222 l~~~~~~~~~~~~dg~i~iwd~~~--------------------~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~ 279 (371)
++++ +.|| |+||.++. -+.+..+..|.++|..+.|+ +..|.+.+.||.+|
T Consensus 242 lAvA-------~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VR 313 (361)
T KOG2445|consen 242 LAVA-------TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVR 313 (361)
T ss_pred EEEe-------ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceee
Confidence 6777 9999 99999873 12455677899999999999 89999999999999
Q ss_pred EEEccCCCC
Q 041206 280 IWLYTHTKN 288 (371)
Q Consensus 280 iwd~~~~~~ 288 (371)
+|.......
T Consensus 314 LWkany~n~ 322 (361)
T KOG2445|consen 314 LWKANYNNL 322 (361)
T ss_pred ehhhhhhhh
Confidence 998655443
No 152
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.4e-18 Score=132.57 Aligned_cols=250 Identities=13% Similarity=0.168 Sum_probs=187.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---------c-eEEE-EeCCCeeEEEeecCCEEEEecCCcEEEEEeCC
Q 041206 97 KAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSG---------R-CVNV-ITNGAEIGCLISEGSWVFLGLPNAVKSWRVNA 165 (371)
Q Consensus 97 ~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---------~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 165 (371)
..|.+-+++|.+++|+.|..+|.|.+..+.+- + .+-. -.+..++..+.+.+.+++++.|+.|+-|..+.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw~W~E 90 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGWEWNE 90 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccCceEEEeeehh
Confidence 45677789999999999999999999987532 1 1111 23457788999999999999999999998754
Q ss_pred C------------------------CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEe-c
Q 041206 166 A------------------------SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSS-S 217 (371)
Q Consensus 166 ~------------------------~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~-~ 217 (371)
. .|+++...|. -++.++.|+.++-||++++ +..+.+++|. .+.++.- +
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G----~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDG----RIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCC----EEEEEEcCCcceeeeeeecc
Confidence 4 7888988877 6666668999999999999 8999999999 9999988 5
Q ss_pred CCceeEecccceeeeeCCCeEEEEECCCceEEEEeec---------CC-CcEEEEEEcCCeEEEEeCCCcEEEEEccCCC
Q 041206 218 NDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKG---------HS-DTVTSLLFWDEYLFSSSLDETIKIWLYTHTK 287 (371)
Q Consensus 218 ~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~---------~~-~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 287 (371)
..+++++| ++||++++||.+++++++.+.. |. ..|.+++.+...|++|+ ...+.+|.++..+
T Consensus 167 ~~~qilsG-------~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse 238 (325)
T KOG0649|consen 167 ANGQILSG-------AEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSE 238 (325)
T ss_pred cCcceeec-------CCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCC
Confidence 56689999 9999999999999999877643 22 25677877788887665 4579999999887
Q ss_pred Cccee---cceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC--eEEeeCCCCcEEEEE
Q 041206 288 NNAEL---SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG--LFFPGDASGSVGVWK 360 (371)
Q Consensus 288 ~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~--~l~~~~~dg~i~iw~ 360 (371)
....+ ..+..+.+-++ .+++++..+.|.-|.+..--...........+...|+..- +|-+++..+.+.|+.
T Consensus 239 ~t~vfpipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 239 STCVFPIPARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred ceEEEecccceeEeeeecc--eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 64333 11222233322 6778888889999988753333322244556666666555 666677777888764
No 153
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=1.6e-18 Score=139.61 Aligned_cols=247 Identities=15% Similarity=0.169 Sum_probs=178.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--------------eEEEEeCCCeeEEEe---------ecCCEEEE-ec
Q 041206 99 VTNVGLPSGSNKLYSGSRDGRVSVWDRDSGR--------------CVNVITNGAEIGCLI---------SEGSWVFL-GL 154 (371)
Q Consensus 99 V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--------------~~~~~~~~~~~~~~~---------~~~~~~~~-~~ 154 (371)
...+.|+|||..|++-+.|..+.+|++...- ....+..+..+...+ ++..++++ ..
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 3467899999999999999999999975221 111122233332221 23445544 56
Q ss_pred CCcEEEEEeCCC----------------CeeEEEEeCC-EEEEEeCCCeEEEEeccCCCCcceeeEEEe----cCc-ceE
Q 041206 155 PNAVKSWRVNAA----------------SVNALVVNND-LLFAGSEGGVISVWKGTFVANPFKQVASIR----APL-WFC 212 (371)
Q Consensus 155 ~~~i~~~~~~~~----------------~v~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~----~~~-~v~ 212 (371)
++.|++||.-++ ...+++|+|+ .-+.++....|+++|+...........++. +.. -+.
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis 211 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS 211 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence 899999999888 5678999999 444455778999999954432211111111 123 788
Q ss_pred EEEecCCc-e-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEe-CCCcEEEEEccCCC
Q 041206 213 SLSSSNDT-R-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSS-LDETIKIWLYTHTK 287 (371)
Q Consensus 213 ~~~~~~~~-~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~iwd~~~~~ 287 (371)
+++++|-. + ++.| +....+-||.-..+.+++.+.+|.+.|+-++|. ++.|.+|+ .|-.|..||++...
T Consensus 212 c~a~sP~~~~~~a~g-------sY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~ 284 (406)
T KOG2919|consen 212 CFAFSPMDSKTLAVG-------SYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR 284 (406)
T ss_pred eeeccCCCCcceeee-------cccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc
Confidence 99999955 3 8888 999999999999999999999999999999998 78888887 47799999988765
Q ss_pred C--------cc-eecceEEEEecCCCCEEEEecCCCeEEEEEcCC-cceeeeec-CCceEEEEEeCCCC-eEEeeCCC
Q 041206 288 N--------NA-ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPS-FKLRARIF-SRREVEVDQIGPAG-LFFPGDAS 353 (371)
Q Consensus 288 ~--------~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~d 353 (371)
. .. .-..+..-..+. +++|++|+.||.|++||++. +..+..+. +...++.++++|-- ++++++..
T Consensus 285 ~pv~~L~rhv~~TNQRI~FDld~~-~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 285 DPVYALERHVGDTNQRILFDLDPK-GEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred chhhhhhhhccCccceEEEecCCC-CceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 3 11 122333333344 45999999999999999998 55444444 57889999999988 78877654
No 154
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=3.2e-20 Score=159.61 Aligned_cols=263 Identities=16% Similarity=0.171 Sum_probs=191.0
Q ss_pred cceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCE
Q 041206 31 KGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNK 110 (371)
Q Consensus 31 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 110 (371)
+..+...+..|.+.|..+++++ ..+..+.+..+++|++|++.-.........+++.+|++|.++|.|+++.+++..
T Consensus 283 ~w~ik~tl~s~~d~ir~l~~~~----sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~ 358 (577)
T KOG0642|consen 283 KWNIKFTLRSHDDCIRALAFHP----SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEH 358 (577)
T ss_pred ecceeeeeecchhhhhhhhcCC----CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceE
Confidence 3556678899999999999999 666777789999999999733333445677899999999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCCEEEEEeCCCeEEEE
Q 041206 111 LYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNNDLLFAGSEGGVISVW 190 (371)
Q Consensus 111 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~l~~~~~dg~v~iw 190 (371)
+++|+.||+|+.|++....-- + | .+
T Consensus 359 ~ysgg~Dg~I~~w~~p~n~dp--~-------------------------------------------------d----s~ 383 (577)
T KOG0642|consen 359 CYSGGIDGTIRCWNLPPNQDP--D-------------------------------------------------D----SY 383 (577)
T ss_pred EEeeccCceeeeeccCCCCCc--c-------------------------------------------------c----cc
Confidence 999999999999997622100 0 0 11
Q ss_pred eccCCCCcceeeEEEecCc-ceEEEEecCCc-eeEecccceeeeeCCCeEEEEECCCceEEEEeec--CCCcEEEEEEcC
Q 041206 191 KGTFVANPFKQVASIRAPL-WFCSLSSSNDT-RWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKG--HSDTVTSLLFWD 266 (371)
Q Consensus 191 d~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~ 266 (371)
|.. .....+.+|. .+..+++++.. +|+++ +.||+++.|+.....+ .+|.. ..+.-.++.+-.
T Consensus 384 dp~------vl~~~l~Ghtdavw~l~~s~~~~~Llsc-------s~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~s 449 (577)
T KOG0642|consen 384 DPS------VLSGTLLGHTDAVWLLALSSTKDRLLSC-------SSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTS 449 (577)
T ss_pred Ccc------hhccceeccccceeeeeecccccceeee-------cCCceEEeeccCCcCc-cccCCccccCCcceEeecc
Confidence 111 3445788999 99999999865 49999 9999999999987665 23322 122334555542
Q ss_pred ---CeEEEEeCCCcEEEEEccCCC-----------CcceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-
Q 041206 267 ---EYLFSSSLDETIKIWLYTHTK-----------NNAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF- 331 (371)
Q Consensus 267 ---~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~- 331 (371)
...++...-+.-.++++.... .......+..+.+.++..+.+++..|+.|+++|..+++++....
T Consensus 450 s~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a 529 (577)
T KOG0642|consen 450 SRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVA 529 (577)
T ss_pred chhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheee
Confidence 222322222222223321111 11111234445666666799999999999999999999887766
Q ss_pred CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccce
Q 041206 332 SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 332 ~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~ 366 (371)
|...++++++.|+| +|++++.||.+++|++..+.+
T Consensus 530 ~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 530 HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred ccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence 68899999999999 999999999999999976544
No 155
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=1.9e-19 Score=148.49 Aligned_cols=225 Identities=15% Similarity=0.201 Sum_probs=167.7
Q ss_pred eeEeeeCccCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCC
Q 041206 88 TLMKLNGHKKAVTNVGLPS-GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAA 166 (371)
Q Consensus 88 ~~~~l~~h~~~V~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 166 (371)
..-.+.||+++|..++|+| +.+.+||||.|.+|+||.+..+.....+. .+ +....-|+.
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt--ep------------------vv~L~gH~r 132 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT--EP------------------VVELYGHQR 132 (472)
T ss_pred CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc--cc------------------eEEEeecce
Confidence 3456789999999999999 77889999999999999998765544333 22 333334666
Q ss_pred CeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEE
Q 041206 167 SVNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTW 241 (371)
Q Consensus 167 ~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iw 241 (371)
.|--++|+|. .|++++.|..|.+|++.++ +.+.++. |. .|.++.|+.||. +++. +.|..|+||
T Consensus 133 rVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tg----eali~l~-hpd~i~S~sfn~dGs~l~Tt-------ckDKkvRv~ 200 (472)
T KOG0303|consen 133 RVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTG----EALITLD-HPDMVYSMSFNRDGSLLCTT-------CKDKKVRVI 200 (472)
T ss_pred eEEEEeecccchhhHhhccCCceEEEEeccCC----ceeeecC-CCCeEEEEEeccCCceeeee-------cccceeEEE
Confidence 7999999987 8999999999999999999 6777777 77 999999999996 8888 999999999
Q ss_pred ECCCceEEEEeecCCC--cEEEEEEc-CCeEEEEe----CCCcEEEEEccCCCCccee------cceEEEEecCCCCEE-
Q 041206 242 NLDNLECVQTLKGHSD--TVTSLLFW-DEYLFSSS----LDETIKIWLYTHTKNNAEL------SSLFGMLDAEAKPVL- 307 (371)
Q Consensus 242 d~~~~~~~~~~~~~~~--~v~~~~~~-~~~l~s~~----~dg~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~~l- 307 (371)
|.++++.+..-.+|.+ +...+-.. +. ++|.+ .+..+-+||....+..... +.+..-++.++..++
T Consensus 201 dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivY 279 (472)
T KOG0303|consen 201 DPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVY 279 (472)
T ss_pred cCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEE
Confidence 9999999988888876 33333222 45 55443 5778999997665543222 233333444444454
Q ss_pred EEecCCCeEEEEEcCCcceee----eecCCceEEEEEeCCCC
Q 041206 308 FSSGKDSAIRLYELPSFKLRA----RIFSRREVEVDQIGPAG 345 (371)
Q Consensus 308 ~~~~~d~~i~iwd~~~~~~~~----~~~~~~~v~~~~~s~~~ 345 (371)
++|-.|+.||-|.+....+.. ++....+-..+.|-|..
T Consensus 280 l~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 280 LCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKR 321 (472)
T ss_pred EEecCCcceEEEEecCCCceeEEecccccCCccccccccccc
Confidence 567789999999998866433 33346666777777753
No 156
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=2.4e-19 Score=142.20 Aligned_cols=286 Identities=15% Similarity=0.086 Sum_probs=194.3
Q ss_pred EEEEeeccceeeeeeeecceeeccceeeCCcc----ceEEEEEeccCCC-CccCCceeeEeee-CccCCeEEEEEcCCCC
Q 041206 36 EREEMFGFGLAAMAIRVCNNWISDSCVYGDKC----RFLHSWVHSVDGD-NTTNSLATLMKLN-GHKKAVTNVGLPSGSN 109 (371)
Q Consensus 36 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~-~~~~~~~~~~~l~-~h~~~V~~~~~~~~~~ 109 (371)
..|..|.+.|..++.+|.+.-+...|.....+ .-+-+|....+.. ......+.+..|. .|-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 34667888999999999877555566543322 2466788544422 2344566777776 6777999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCce-EEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC---EEEEEeCCC
Q 041206 110 KLYSGSRDGRVSVWDRDSGRC-VNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND---LLFAGSEGG 185 (371)
Q Consensus 110 ~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~---~l~~~~~dg 185 (371)
.+++-. |..|.+|+++.+.. +..+....... +....++-+|+|. .-+....|+
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e----------------------~~~~ftsg~WspHHdgnqv~tt~d~ 193 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAE----------------------MRHSFTSGAWSPHHDGNQVATTSDS 193 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeeccccccc----------------------ccceecccccCCCCccceEEEeCCC
Confidence 999877 78899999998765 44333322110 1224666778885 555566789
Q ss_pred eEEEEeccCCCCcceeeEE-EecCc-ceEEEEecCCce--eEecccceeeeeCCCeEEEEECCC-ceEEEEeecCCCcEE
Q 041206 186 VISVWKGTFVANPFKQVAS-IRAPL-WFCSLSSSNDTR--WNSKEEAAVFEFCGHTTRTWNLDN-LECVQTLKGHSDTVT 260 (371)
Q Consensus 186 ~v~iwd~~~~~~~~~~~~~-~~~~~-~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~ 260 (371)
++..||+++.. .... -..|. .|..+.|+|+-+ |+++ +.||.|++||.+. ..+++.+.+|...|.
T Consensus 194 tl~~~D~RT~~----~~~sI~dAHgq~vrdlDfNpnkq~~lvt~-------gDdgyvriWD~R~tk~pv~el~~HsHWvW 262 (370)
T KOG1007|consen 194 TLQFWDLRTMK----KNNSIEDAHGQRVRDLDFNPNKQHILVTC-------GDDGYVRIWDTRKTKFPVQELPGHSHWVW 262 (370)
T ss_pred cEEEEEccchh----hhcchhhhhcceeeeccCCCCceEEEEEc-------CCCccEEEEeccCCCccccccCCCceEEE
Confidence 99999999873 3333 34566 899999999765 8999 9999999999985 457899999999999
Q ss_pred EEEEc---CCeEEEEeCCCcEEEEEccCCCCcceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecCCceEE
Q 041206 261 SLLFW---DEYLFSSSLDETIKIWLYTHTKNNAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVE 337 (371)
Q Consensus 261 ~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~ 337 (371)
++.|+ ++++++++.|..|.+|....-.....+ .+.++..-. -..|..=++=-+..+.+..--.|...|+
T Consensus 263 ~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi------~~~~dese~--e~~dseer~kpL~dg~l~tydehEDSVY 334 (370)
T KOG1007|consen 263 AVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQI------EFEDDESES--EDEDSEERVKPLQDGQLETYDEHEDSVY 334 (370)
T ss_pred EEEecCccceEEEecCCCceeEEEecccccccccc------ccccccccC--cchhhHHhcccccccccccccccccceE
Confidence 99999 679999999999999975443322111 001000000 0000000000112222211123688999
Q ss_pred EEEeCCCC--eEEeeCCCCcEEEEEccc
Q 041206 338 VDQIGPAG--LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 338 ~~~~s~~~--~l~~~~~dg~i~iw~~~~ 363 (371)
+++||.-. .+|+-+.||.+-|=++..
T Consensus 335 ~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 335 ALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred EEeeccCCCeeEEEeccCceEEeecCCh
Confidence 99998766 999999999998876653
No 157
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.1e-18 Score=158.07 Aligned_cols=253 Identities=16% Similarity=0.172 Sum_probs=193.4
Q ss_pred EeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCC
Q 041206 39 EMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDG 118 (371)
Q Consensus 39 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg 118 (371)
..|..|.+.+++.+.+.|+. ..+.++.|+.|... ...+.-.++.-|...|.+++.. +.+|++|+.++
T Consensus 10 yaht~G~t~i~~d~~gefi~----tcgsdg~ir~~~~~-------sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~ 76 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFIC----TCGSDGDIRKWKTN-------SDEEEPETIDISGELVSSIACY--SNHFLTGSEQN 76 (933)
T ss_pred hhccCceEEEEEcCCCCEEE----EecCCCceEEeecC-------CcccCCchhhccCceeEEEeec--ccceEEeeccc
Confidence 36899999999988777543 35678889999932 2212233333377888888865 55999999999
Q ss_pred cEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCC
Q 041206 119 RVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVWKGTFVA 196 (371)
Q Consensus 119 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~ 196 (371)
+|.++.+..++.-..+.. -+-++.+++++.+ +++.|+.|-.|++.++.+.
T Consensus 77 tv~~y~fps~~~~~iL~R---------------------------ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~- 128 (933)
T KOG1274|consen 77 TVLRYKFPSGEEDTILAR---------------------------FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS- 128 (933)
T ss_pred eEEEeeCCCCCccceeee---------------------------eeccceEEEEecCCcEEEeecCceeEEEEecccc-
Confidence 999999988764322211 1224788888877 9999999999999999988
Q ss_pred CcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecC--------CCcEEEEEEc-
Q 041206 197 NPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGH--------SDTVTSLLFW- 265 (371)
Q Consensus 197 ~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~--------~~~v~~~~~~- 265 (371)
.....+++|. +|.++.++|.+. |++. +.||.|++||+.++.+.+++.+- ...+..++|+
T Consensus 129 ---s~~~~lrgh~apVl~l~~~p~~~fLAvs-------s~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P 198 (933)
T KOG1274|consen 129 ---SQEKVLRGHDAPVLQLSYDPKGNFLAVS-------SCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP 198 (933)
T ss_pred ---chheeecccCCceeeeeEcCCCCEEEEE-------ecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC
Confidence 7788999999 999999999987 7888 99999999999998877665431 3456778898
Q ss_pred -CCeEEEEeCCCcEEEEEccCCCCc------ceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecCCceEEE
Q 041206 266 -DEYLFSSSLDETIKIWLYTHTKNN------AELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEV 338 (371)
Q Consensus 266 -~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~ 338 (371)
+..++..+.|+.|++|+.....+. ..-+.++.+.+++.+.|||+++.||.|.|||.++.+. -.....|.+
T Consensus 199 k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~ 275 (933)
T KOG1274|consen 199 KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER---HEFKRAVCC 275 (933)
T ss_pred CCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh---ccccceeEE
Confidence 468888899999999996554431 1112356667777788999999999999999998222 223578999
Q ss_pred EEeCCCC
Q 041206 339 DQIGPAG 345 (371)
Q Consensus 339 ~~~s~~~ 345 (371)
++|.|+.
T Consensus 276 ~aw~p~~ 282 (933)
T KOG1274|consen 276 EAWKPNA 282 (933)
T ss_pred EecCCCC
Confidence 9999987
No 158
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=8.3e-21 Score=175.67 Aligned_cols=241 Identities=19% Similarity=0.220 Sum_probs=182.6
Q ss_pred eeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 041206 47 AMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPS-GSNKLYSGSRDGRVSVWDR 125 (371)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~~~dg~v~iwd~ 125 (371)
.+++.+.+.-..+....|..++.|-+|+.... ........+.+++.|++.|..+.|++ .++.||+|+.||.|.|||+
T Consensus 69 kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDl 146 (1049)
T KOG0307|consen 69 KLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDL 146 (1049)
T ss_pred eeeecccCCCccceeeccccCCceEEecchhh--ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEecc
Confidence 44555544434456777889999999993221 12334567888999999999999999 4559999999999999999
Q ss_pred CCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceee
Q 041206 126 DSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQV 202 (371)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~ 202 (371)
.+-+.-.++.... ....|.+++|+.. .|++++.+|.+.|||++.. +++
T Consensus 147 nn~~tP~~~~~~~-------------------------~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~----~pi 197 (1049)
T KOG0307|consen 147 NKPETPFTPGSQA-------------------------PPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK----KPI 197 (1049)
T ss_pred CCcCCCCCCCCCC-------------------------CcccceEeccchhhhHHhhccCCCCCceeccccCC----Ccc
Confidence 8754333332110 2236999999987 8999999999999999998 666
Q ss_pred EEEecCc---ceEEEEecCCc--eeEecccceeeeeCC---CeEEEEECCC-ceEEEEeecCCCcEEEEEEc---CCeEE
Q 041206 203 ASIRAPL---WFCSLSSSNDT--RWNSKEEAAVFEFCG---HTTRTWNLDN-LECVQTLKGHSDTVTSLLFW---DEYLF 270 (371)
Q Consensus 203 ~~~~~~~---~v~~~~~~~~~--~l~~~~~~~~~~~~d---g~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~---~~~l~ 270 (371)
..+..+. .+..++|+|++ +++++ +.| -.|.+||+|. ..+++.+++|...|.++.|. +.+|+
T Consensus 198 i~ls~~~~~~~~S~l~WhP~~aTql~~A-------s~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lll 270 (1049)
T KOG0307|consen 198 IKLSDTPGRMHCSVLAWHPDHATQLLVA-------SGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLL 270 (1049)
T ss_pred cccccCCCccceeeeeeCCCCceeeeee-------cCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhh
Confidence 6666655 58899999987 36655 444 3789999985 45778889999999999998 47999
Q ss_pred EEeCCCcEEEEEccCCCCcceec----ceEEE-EecCCCCEEEEecCCCeEEEEEcCCcc
Q 041206 271 SSSLDETIKIWLYTHTKNNAELS----SLFGM-LDAEAKPVLFSSGKDSAIRLYELPSFK 325 (371)
Q Consensus 271 s~~~dg~i~iwd~~~~~~~~~~~----~~~~~-~~~~~~~~l~~~~~d~~i~iwd~~~~~ 325 (371)
+++.|+.|.+|+..+.+....+. .+..+ |.+....++++++.||.|.||.+....
T Consensus 271 SsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 271 SSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999999999998876533331 23333 444555589999999999999987654
No 159
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=3e-19 Score=155.73 Aligned_cols=241 Identities=17% Similarity=0.184 Sum_probs=171.5
Q ss_pred eCccCCeEE--EEEcC---CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCC
Q 041206 93 NGHKKAVTN--VGLPS---GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAAS 167 (371)
Q Consensus 93 ~~h~~~V~~--~~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 167 (371)
..|.-++.. ..|++ ....||.+.+||.|.++|....... + .+..++.|-.|...
T Consensus 44 ~~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr--~-------------------ee~~lk~~~aH~nA 102 (720)
T KOG0321|consen 44 ANDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR--L-------------------EERQLKKPLAHKNA 102 (720)
T ss_pred ccCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcc--h-------------------hhhhhcccccccce
Confidence 334444444 66765 4467999999999999998754432 0 12234556668888
Q ss_pred eeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEE--EecCc-ceEEEEecCCce--eEecccceeeeeCCCeEEE
Q 041206 168 VNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVAS--IRAPL-WFCSLSSSNDTR--WNSKEEAAVFEFCGHTTRT 240 (371)
Q Consensus 168 v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~~~-~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~i 240 (371)
|..+.|-|. .|++++.|.++++||+++. ++... +.+|. .+.+++|.|.+. |++| +.||.|.|
T Consensus 103 ifDl~wapge~~lVsasGDsT~r~Wdvk~s----~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tG-------gRDg~ill 171 (720)
T KOG0321|consen 103 IFDLKWAPGESLLVSASGDSTIRPWDVKTS----RLVGGRLNLGHTGSVKSECFMPTNPAVFCTG-------GRDGEILL 171 (720)
T ss_pred eEeeccCCCceeEEEccCCceeeeeeeccc----eeecceeecccccccchhhhccCCCcceeec-------cCCCcEEE
Confidence 999999887 9999999999999999998 66655 88999 999999999885 8899 99999999
Q ss_pred EECCCce--------------------E-------EEEeecCCC----cEEEEEEc-CCeEEEEeC-CCcEEEEEccCCC
Q 041206 241 WNLDNLE--------------------C-------VQTLKGHSD----TVTSLLFW-DEYLFSSSL-DETIKIWLYTHTK 287 (371)
Q Consensus 241 wd~~~~~--------------------~-------~~~~~~~~~----~v~~~~~~-~~~l~s~~~-dg~i~iwd~~~~~ 287 (371)
||++... + +.....+.. .|+.+.|. +..|++++. |+.|++||++...
T Consensus 172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence 9997421 0 111122333 35556666 678999887 9999999988755
Q ss_pred Cc---------------ceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcc--eeeeecC---CceEEEEEeCCCC-e
Q 041206 288 NN---------------AELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFK--LRARIFS---RREVEVDQIGPAG-L 346 (371)
Q Consensus 288 ~~---------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~---~~~v~~~~~s~~~-~ 346 (371)
.. .....+..+.....+.+|++.+.|+.|++|++.+.. ++..+.+ ..--..-..+||+ .
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~ 331 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS 331 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce
Confidence 21 111123333333334477777779999999998754 3333333 1112233478999 9
Q ss_pred EEeeCCCCcEEEEEccccc
Q 041206 347 FFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 347 l~~~~~dg~i~iw~~~~~~ 365 (371)
+++|+.|...++|.+...+
T Consensus 332 l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 332 LLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred EeccCCCcceeeeeecCcc
Confidence 9999999999999998754
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=3.6e-19 Score=150.96 Aligned_cols=234 Identities=12% Similarity=0.119 Sum_probs=181.0
Q ss_pred CcEEEEECCCCceEEEEeCC---CeeEEEeec-CCEEEE---ecCCcEEEEEeCCC--Ce-----------eEEEEeCC-
Q 041206 118 GRVSVWDRDSGRCVNVITNG---AEIGCLISE-GSWVFL---GLPNAVKSWRVNAA--SV-----------NALVVNND- 176 (371)
Q Consensus 118 g~v~iwd~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~---~~~~~i~~~~~~~~--~v-----------~~~~~~~~- 176 (371)
..+++||.........+.+. ..+..+.+. .+++++ +.|..+++|.-... .| .|++....
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S 91 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQS 91 (673)
T ss_pred CceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcc
Confidence 46999998876655554432 225555543 333444 45677888876544 11 23322222
Q ss_pred -EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc-eeEecccceeeeeCCCeEEEEECCCceEEEEee
Q 041206 177 -LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT-RWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLK 253 (371)
Q Consensus 177 -~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~ 253 (371)
++++|+..+.|+|||++.. .+.+.++.|. .|+++.++... .++++ +..|.|.|-.+.++.....|.
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~k----l~hr~lkdh~stvt~v~YN~~DeyiAsv-------s~gGdiiih~~~t~~~tt~f~ 160 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAK----LIHRFLKDHQSTVTYVDYNNTDEYIASV-------SDGGDIIIHGTKTKQKTTTFT 160 (673)
T ss_pred eeeeccCcCceeeehhhHHH----HHhhhccCCcceeEEEEecCCcceeEEe-------ccCCcEEEEecccCcccccee
Confidence 8999999999999999976 7778899999 99999998855 59999 999999999999988877777
Q ss_pred cCCC-cEEEEEEc---CCeEEEEeCCCcEEEEEccCCCC--------cceecceEEEEecCCCCEEEEecCCCeEEEEEc
Q 041206 254 GHSD-TVTSLLFW---DEYLFSSSLDETIKIWLYTHTKN--------NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYEL 321 (371)
Q Consensus 254 ~~~~-~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 321 (371)
...+ .|.-+.|+ ..+|.+++.+|.|.+||+....+ ..+...++ +++.+..+|++.+.|..|.+||.
T Consensus 161 ~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gic--fspsne~l~vsVG~Dkki~~yD~ 238 (673)
T KOG4378|consen 161 IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGIC--FSPSNEALLVSVGYDKKINIYDI 238 (673)
T ss_pred cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcce--ecCCccceEEEecccceEEEeec
Confidence 4434 55578888 35788899999999999876553 33444555 66777778999999999999999
Q ss_pred CCcceeeeecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccc
Q 041206 322 PSFKLRARIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 322 ~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
...+....+....+...++|+++| +|++|...|.|..||++..
T Consensus 239 ~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 239 RSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred ccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence 998888888888999999999999 9999999999999999864
No 161
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.83 E-value=6.4e-19 Score=154.60 Aligned_cols=263 Identities=15% Similarity=0.162 Sum_probs=193.8
Q ss_pred ceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 041206 44 GLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVW 123 (371)
Q Consensus 44 ~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iw 123 (371)
.|..+++.|.+.-+. -..+.-+.+++ .+++.++++|+||.+.|+|++|+.||+++|||+.|..|.+|
T Consensus 14 ci~d~afkPDGsqL~-----lAAg~rlliyD--------~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W 80 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLI-----LAAGSRLLVYD--------TSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIW 80 (1081)
T ss_pred chheeEECCCCceEE-----EecCCEEEEEe--------CCCcccccccccccceEEEEEEccCCceeccCCCceeEEEe
Confidence 677888888766321 12334566666 67889999999999999999999999999999999999999
Q ss_pred ECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCccee
Q 041206 124 DRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQ 201 (371)
Q Consensus 124 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~ 201 (371)
+-.- +-+-.+. |+..|.|+.|+|- .+++++- ...-+|..... .
T Consensus 81 ~~kl-EG~LkYS----------------------------H~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK-----~ 125 (1081)
T KOG1538|consen 81 TSKL-EGILKYS----------------------------HNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQK-----S 125 (1081)
T ss_pred cccc-cceeeec----------------------------cCCeeeEeecCchHHHhhhcch-hhccccChhhh-----h
Confidence 8542 2222333 4445889999987 6666654 45668877653 3
Q ss_pred eEEEecCcceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEE--EEeecCCCcEEEEEEcC-------CeEEE
Q 041206 202 VASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECV--QTLKGHSDTVTSLLFWD-------EYLFS 271 (371)
Q Consensus 202 ~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~-------~~l~s 271 (371)
+...+....+.+++|..||+ ++.| -.+|+|.+-+-...+.+ ..--+...+|.+++|++ +.++.
T Consensus 126 V~K~kss~R~~~CsWtnDGqylalG-------~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV 198 (1081)
T KOG1538|consen 126 VSKHKSSSRIICCSWTNDGQYLALG-------MFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAV 198 (1081)
T ss_pred HHhhhhheeEEEeeecCCCcEEEEe-------ccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEE
Confidence 33333333899999999997 8888 99999998865432222 22235678999999982 48888
Q ss_pred EeCCCcEEEEEccCCCC----cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-
Q 041206 272 SSLDETIKIWLYTHTKN----NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG- 345 (371)
Q Consensus 272 ~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~- 345 (371)
.....++.+|.+..... .-.+...+...++++. +++.|+.|+.+++|-.+ +-.+.++. .+..|+.++..|++
T Consensus 199 ~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGE-y~LiGGsdk~L~~fTR~-GvrLGTvg~~D~WIWtV~~~PNsQ 276 (1081)
T KOG1538|consen 199 ADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGE-YILLGGSDKQLSLFTRD-GVRLGTVGEQDSWIWTVQAKPNSQ 276 (1081)
T ss_pred EeccceeEEEEecceeecccccCCCCchhheeccCCc-EEEEccCCCceEEEeec-CeEEeeccccceeEEEEEEccCCc
Confidence 89999999998765332 1222333334556555 99999999999999644 45555554 47899999999999
Q ss_pred eEEeeCCCCcEEEEEccc
Q 041206 346 LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 346 ~l~~~~~dg~i~iw~~~~ 363 (371)
.++.|+.||+|..|++-.
T Consensus 277 ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 277 YVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred eEEEEEccCeeehhhhHH
Confidence 999999999999998753
No 162
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=9.6e-19 Score=147.09 Aligned_cols=230 Identities=10% Similarity=0.081 Sum_probs=176.4
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEE
Q 041206 96 KKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSG--RCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVV 173 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~ 173 (371)
.++|+++.|+|....|++|+.||+++||.++.. ..+..+. +...+|.+.+|
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~---------------------------l~~fPi~~a~f 265 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH---------------------------LEKFPIQKAEF 265 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee---------------------------eccCccceeee
Confidence 468999999999999999999999999988633 2333333 23446888888
Q ss_pred eCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc--ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCce
Q 041206 174 NND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL--WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLE 247 (371)
Q Consensus 174 ~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~ 247 (371)
.|+ .+++++....++.||+.+.+. ..+..+.++. .+....+++++. ++.. +..|.|.+....+++
T Consensus 266 ~p~G~~~i~~s~rrky~ysyDle~ak~--~k~~~~~g~e~~~~e~FeVShd~~fia~~-------G~~G~I~lLhakT~e 336 (514)
T KOG2055|consen 266 APNGHSVIFTSGRRKYLYSYDLETAKV--TKLKPPYGVEEKSMERFEVSHDSNFIAIA-------GNNGHIHLLHAKTKE 336 (514)
T ss_pred cCCCceEEEecccceEEEEeecccccc--ccccCCCCcccchhheeEecCCCCeEEEc-------ccCceEEeehhhhhh
Confidence 887 789999999999999988732 3334444444 788899999987 7778 999999999999999
Q ss_pred EEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCc------ceecceEEEEecCCCCEEEEecCCCeEEEE
Q 041206 248 CVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNN------AELSSLFGMLDAEAKPVLFSSGKDSAIRLY 319 (371)
Q Consensus 248 ~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 319 (371)
.+..++ ..+.|..++|+ ++.|++++.+|.|.+||++..... +.+..... ..+.++.+||+|+..|.|.||
T Consensus 337 li~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~-~~S~ng~ylA~GS~~GiVNIY 414 (514)
T KOG2055|consen 337 LITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSL-CISLNGSYLATGSDSGIVNIY 414 (514)
T ss_pred hhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeee-eecCCCceEEeccCcceEEEe
Confidence 998888 57889999998 789999999999999999887542 22222222 333445599999999999999
Q ss_pred EcCCc------ceeeeec-CCceEEEEEeCCCC-eEEeeC--CCCcEEEEEccc
Q 041206 320 ELPSF------KLRARIF-SRREVEVDQIGPAG-LFFPGD--ASGSVGVWKWLL 363 (371)
Q Consensus 320 d~~~~------~~~~~~~-~~~~v~~~~~s~~~-~l~~~~--~dg~i~iw~~~~ 363 (371)
|.++. +++..+. -...|++++|+||. .||.+| .+..+++-.+.+
T Consensus 415 d~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 415 DGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred ccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence 97652 3444433 26789999999999 777766 456777766543
No 163
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.4e-18 Score=139.59 Aligned_cols=240 Identities=13% Similarity=0.189 Sum_probs=171.5
Q ss_pred eeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCC
Q 041206 88 TLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAAS 167 (371)
Q Consensus 88 ~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 167 (371)
+-.+|+. .. -.|+.|++.|.+||+|+.||.|.|||+.|....+.+.. |..+
T Consensus 17 l~~tld~-~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsa---------------------------H~~p 67 (405)
T KOG1273|consen 17 LTHTLDN-PL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSA---------------------------HVRP 67 (405)
T ss_pred hceeccC-Cc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhc---------------------------cccc
Confidence 3445542 22 78999999999999999999999999998876655554 5557
Q ss_pred eeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCc--eeEecccceeeeeCCCeEEEEEC
Q 041206 168 VNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDT--RWNSKEEAAVFEFCGHTTRTWNL 243 (371)
Q Consensus 168 v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~~~~~~~~dg~i~iwd~ 243 (371)
|.+++|+++ .|++++.|..|.+||+..+ .+++.++-..+|....|+|-. +.++. -.+..-.+-++
T Consensus 68 i~sl~WS~dgr~LltsS~D~si~lwDl~~g----s~l~rirf~spv~~~q~hp~k~n~~va~-------~~~~sp~vi~~ 136 (405)
T KOG1273|consen 68 ITSLCWSRDGRKLLTSSRDWSIKLWDLLKG----SPLKRIRFDSPVWGAQWHPRKRNKCVAT-------IMEESPVVIDF 136 (405)
T ss_pred eeEEEecCCCCEeeeecCCceeEEEeccCC----CceeEEEccCccceeeeccccCCeEEEE-------EecCCcEEEEe
Confidence 999999998 9999999999999999999 788888888899999999954 34444 33333444444
Q ss_pred CCceEEEEee-cCCC---c-EEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcce-----ecceEEEEecCCCCEEEEec
Q 041206 244 DNLECVQTLK-GHSD---T-VTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAE-----LSSLFGMLDAEAKPVLFSSG 311 (371)
Q Consensus 244 ~~~~~~~~~~-~~~~---~-v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~ 311 (371)
..++.. .+. ...+ . -.+..|. |+++++|...|.+.++|..+.+.... .+.+..+..+..++.|+.-+
T Consensus 137 s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNt 215 (405)
T KOG1273|consen 137 SDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINT 215 (405)
T ss_pred cCCcee-eccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEec
Confidence 432211 111 1111 1 1122354 89999999999999999877664222 24556667777788999999
Q ss_pred CCCeEEEEEcCCcc---------eeeeec---CCceEEEEEeCCCC-eEEeeC-CCCcEEEEEccccceec
Q 041206 312 KDSAIRLYELPSFK---------LRARIF---SRREVEVDQIGPAG-LFFPGD-ASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 312 ~d~~i~iwd~~~~~---------~~~~~~---~~~~v~~~~~s~~~-~l~~~~-~dg~i~iw~~~~~~~~~ 368 (371)
.|..||.|+++.-. +..++. ..-.=.++.|+.+| ++++++ .-..++||.-..+.+.|
T Consensus 216 sDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVK 286 (405)
T KOG1273|consen 216 SDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVK 286 (405)
T ss_pred CCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceee
Confidence 99999999987311 111211 12334578899999 666665 45689999998887665
No 164
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.82 E-value=7.3e-18 Score=148.06 Aligned_cols=241 Identities=14% Similarity=0.160 Sum_probs=183.3
Q ss_pred cccCCCCceeeccCcc------cccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCc
Q 041206 13 HKHSEGGETMMSDDDD------LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSL 86 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (371)
..|-|||..|..+..+ ...|.++..+++|.+.|.++|++..+... .+|+.|+.+-+|+ +..
T Consensus 18 ~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrF----ASG~aDK~VI~W~---------~kl 84 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRF----ASGSADKSVIIWT---------SKL 84 (1081)
T ss_pred eEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCcee----ccCCCceeEEEec---------ccc
Confidence 4589999887776655 66799999999999999999998765532 2488999999999 222
Q ss_pred eeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEee--cCCEEEEec-CCcEEEEEe
Q 041206 87 ATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLIS--EGSWVFLGL-PNAVKSWRV 163 (371)
Q Consensus 87 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~i~~~~~ 163 (371)
+-+..+ .|.+.|.|+.|+|-...|+|++-. ..-+|..+.. .+...+....+.+.++ +|.+++.|. +++|.+-+.
T Consensus 85 EG~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK-~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk 161 (1081)
T KOG1538|consen 85 EGILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK-SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK 161 (1081)
T ss_pred cceeee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhh-hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC
Confidence 223333 499999999999999999999864 3778986543 3333344444554443 678888764 777776544
Q ss_pred C-------------CCCeeEEEEeCC-------EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-
Q 041206 164 N-------------AASVNALVVNND-------LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR- 221 (371)
Q Consensus 164 ~-------------~~~v~~~~~~~~-------~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~- 221 (371)
. +.+|.+++|+|. .+++.....++.+|.+... .+..-+.-. ...|+.+.++|.
T Consensus 162 ~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-----~Igk~r~L~FdP~CisYf~NGEy 236 (1081)
T KOG1538|consen 162 NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-----QIGKDRALNFDPCCISYFTNGEY 236 (1081)
T ss_pred CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-----eecccccCCCCchhheeccCCcE
Confidence 3 228999999886 7889999999999988763 444444445 678899999986
Q ss_pred eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEE
Q 041206 222 WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWL 282 (371)
Q Consensus 222 l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd 282 (371)
++.| +.|+.+.+|- +.|-.+.++-.....|..++.. +++++.|+.||+|..|+
T Consensus 237 ~LiG-------Gsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 237 ILLG-------GSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred EEEc-------cCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 7888 9999999996 4466777776677889999887 67999999999999998
No 165
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.81 E-value=2.2e-18 Score=150.50 Aligned_cols=109 Identities=24% Similarity=0.235 Sum_probs=88.2
Q ss_pred CcEEEEEEc---CCeEEEEeCCCcEEEEEccCCCC-----------cceecceEEEEecC-CCCEEEEecCCCeEEEEEc
Q 041206 257 DTVTSLLFW---DEYLFSSSLDETIKIWLYTHTKN-----------NAELSSLFGMLDAE-AKPVLFSSGKDSAIRLYEL 321 (371)
Q Consensus 257 ~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~ 321 (371)
..|+.+.|+ ++.|+.++.||.|++|.+..... ..+...++.+.+++ ....|++++.|.+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 467788887 57999999999999999776542 12223444444433 4458999999999999999
Q ss_pred CCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccc
Q 041206 322 PSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 322 ~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~ 365 (371)
.+++....+. |.+.|.+++|||+| .+|+.+.||+|++|+..+.+
T Consensus 708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred hhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence 9999888877 78999999999999 99999999999999987654
No 166
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.80 E-value=5.2e-18 Score=136.97 Aligned_cols=240 Identities=19% Similarity=0.207 Sum_probs=169.8
Q ss_pred eeeCccCCeEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCc---eEEEEeCCCeeEEEeecCCEEEEecCCcEEEEE
Q 041206 91 KLNGHKKAVTNVGLPS-----GSNKLYSGSRDGRVSVWDRDSGR---CVNVITNGAEIGCLISEGSWVFLGLPNAVKSWR 162 (371)
Q Consensus 91 ~l~~h~~~V~~~~~~~-----~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 162 (371)
...+|+.+|..++|++ +...+|+.+. ..+.++.....- .++.+..++
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d------------------------ 87 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADED------------------------ 87 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCC------------------------
Confidence 3457889999999985 3346677665 458888865433 223322221
Q ss_pred eCCCCeeEEEEe-----CC-EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc--eeEecccceeeee
Q 041206 163 VNAASVNALVVN-----ND-LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT--RWNSKEEAAVFEF 233 (371)
Q Consensus 163 ~~~~~v~~~~~~-----~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~--~l~~~~~~~~~~~ 233 (371)
+....+.++|. .+ ++++|+.-|.|+|.|+.+. +....+.+|. .|+.+.+.|+. .++++ +
T Consensus 88 -~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~----~~~~~~~ghG~sINeik~~p~~~qlvls~-------S 155 (385)
T KOG1034|consen 88 -HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG----QCSKNYRGHGGSINEIKFHPDRPQLVLSA-------S 155 (385)
T ss_pred -CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh----hhccceeccCccchhhhcCCCCCcEEEEe-------c
Confidence 11123334442 23 8999999999999999998 8899999999 99999999987 38899 9
Q ss_pred CCCeEEEEECCCceEEEEe---ecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcceecce-------------
Q 041206 234 CGHTTRTWNLDNLECVQTL---KGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAELSSL------------- 295 (371)
Q Consensus 234 ~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------- 295 (371)
.|..|++|++++..++..| .+|.+.|.++.|+ +.+|++++.|.+|++|++..++-...+...
T Consensus 156 kD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfp 235 (385)
T KOG1034|consen 156 KDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFP 235 (385)
T ss_pred CCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCC
Confidence 9999999999999998877 4799999999999 789999999999999997743311000000
Q ss_pred -EEEEecC----------------CCCEEEEecCCCeEEEEEcC-Ccce-------------eeeec-CCceEEEEEeC-
Q 041206 296 -FGMLDAE----------------AKPVLFSSGKDSAIRLYELP-SFKL-------------RARIF-SRREVEVDQIG- 342 (371)
Q Consensus 296 -~~~~~~~----------------~~~~l~~~~~d~~i~iwd~~-~~~~-------------~~~~~-~~~~v~~~~~s- 342 (371)
....+|. -+.++++-+.++.|..|..- -.+. +.++. ....++-+.|+
T Consensus 236 t~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~ 315 (385)
T KOG1034|consen 236 TPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAF 315 (385)
T ss_pred ccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEee
Confidence 0000111 13478888889999999882 2211 11221 13455555554
Q ss_pred -CCC-eEEeeCCCCcEEEEEcccccee
Q 041206 343 -PAG-LFFPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 343 -~~~-~l~~~~~dg~i~iw~~~~~~~~ 367 (371)
|-+ .||.|...|.|.+||++..++.
T Consensus 316 d~~~~~la~gnq~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 316 DPWQKMLALGNQSGKVYVWDLDNNEPP 342 (385)
T ss_pred cHHHHHHhhccCCCcEEEEECCCCCCc
Confidence 445 9999999999999999876653
No 167
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=3.5e-17 Score=142.02 Aligned_cols=261 Identities=16% Similarity=0.181 Sum_probs=191.3
Q ss_pred eeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCC--E
Q 041206 33 RAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSN--K 110 (371)
Q Consensus 33 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~ 110 (371)
++-..+++|++.|.++...|...|++ +|+.++.+++|. ..++.+++++. -.+.|.|++|+|.+. .
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wla----sGsdDGtvriWE--------i~TgRcvr~~~-~d~~I~~vaw~P~~~~~v 457 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLA----SGSDDGTVRIWE--------IATGRCVRTVQ-FDSEIRSVAWNPLSDLCV 457 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceee----ecCCCCcEEEEE--------eecceEEEEEe-ecceeEEEEecCCCCcee
Confidence 34566899999999999999777765 589999999999 45678887776 456899999999664 3
Q ss_pred EEEEeCCCcEEEEECCCCc--------------------------------------eEEEEeCCCeeEEEee--cCCEE
Q 041206 111 LYSGSRDGRVSVWDRDSGR--------------------------------------CVNVITNGAEIGCLIS--EGSWV 150 (371)
Q Consensus 111 l~s~~~dg~v~iwd~~~~~--------------------------------------~~~~~~~~~~~~~~~~--~~~~~ 150 (371)
||.+- +..+.|-+..-|. ...++.+..++..+.+ .|.++
T Consensus 458 LAvA~-~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYl 536 (733)
T KOG0650|consen 458 LAVAV-GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYL 536 (733)
T ss_pred EEEEe-cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceE
Confidence 44433 3334444432221 1122333444555554 47788
Q ss_pred EEe----cCCcEEEEEeCCC-----------CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceE
Q 041206 151 FLG----LPNAVKSWRVNAA-----------SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFC 212 (371)
Q Consensus 151 ~~~----~~~~i~~~~~~~~-----------~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~ 212 (371)
++- ....|.+.++... .|.++.|+|. ++++++. ..|+|||+... ..+..+.... .|.
T Consensus 537 atV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kq----elvKkL~tg~kwiS 611 (733)
T KOG0650|consen 537 ATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQ----ELVKKLLTGSKWIS 611 (733)
T ss_pred EEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHH----HHHHHHhcCCeeee
Confidence 763 3467777777543 7899999998 7777664 68999999987 7777777767 999
Q ss_pred EEEecCCc-eeEecccceeeeeCCCeEEEEECCC-ceEEEEeecCCCcEEEEEEcC--CeEEEEeCCCcEEEEEcc----
Q 041206 213 SLSSSNDT-RWNSKEEAAVFEFCGHTTRTWNLDN-LECVQTLKGHSDTVTSLLFWD--EYLFSSSLDETIKIWLYT---- 284 (371)
Q Consensus 213 ~~~~~~~~-~l~~~~~~~~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~---- 284 (371)
+++++|.| +++.| +.|+.+..+|+.- .++.+++..|...+++++|++ .+|++|+.||++.|+--.
T Consensus 612 ~msihp~GDnli~g-------s~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~D 684 (733)
T KOG0650|consen 612 SMSIHPNGDNLILG-------SYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYND 684 (733)
T ss_pred eeeecCCCCeEEEe-------cCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehh
Confidence 99999988 49999 9999999999974 457788899999999999995 589999999999998711
Q ss_pred ---CCC------Cccee----cceEEEEecCCCCEEEEecCCCeEEEE
Q 041206 285 ---HTK------NNAEL----SSLFGMLDAEAKPVLFSSGKDSAIRLY 319 (371)
Q Consensus 285 ---~~~------~~~~~----~~~~~~~~~~~~~~l~~~~~d~~i~iw 319 (371)
.+. ..++. .++....+++...+|++++.||+|++|
T Consensus 685 l~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 685 LLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 110 01111 134445577777799999999999998
No 168
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=8.8e-18 Score=136.33 Aligned_cols=253 Identities=13% Similarity=0.139 Sum_probs=176.0
Q ss_pred ccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEE
Q 041206 66 KCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPS--GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCL 143 (371)
Q Consensus 66 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 143 (371)
.-+.|++++ ..+++.+..+++|...++.++|.. ....+.+|+.||+|++||+++......+......
T Consensus 48 Sngsv~lyd--------~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~--- 116 (376)
T KOG1188|consen 48 SNGSVRLYD--------KGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS--- 116 (376)
T ss_pred cCCeEEEEe--------ccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC---
Confidence 345688888 345788999999999999999977 4678999999999999999987665554432110
Q ss_pred eecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEe----CCCeEEEEeccCCCCcceeeE-EEecCc-ceEEEE
Q 041206 144 ISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGS----EGGVISVWKGTFVANPFKQVA-SIRAPL-WFCSLS 215 (371)
Q Consensus 144 ~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~----~dg~v~iwd~~~~~~~~~~~~-~~~~~~-~v~~~~ 215 (371)
..+..+++.+-+ .+++|+ .+-.|.+||++... +++. -...|. .|+++.
T Consensus 117 ---------------------~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q---q~l~~~~eSH~DDVT~lr 172 (376)
T KOG1188|consen 117 ---------------------GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ---QLLRQLNESHNDDVTQLR 172 (376)
T ss_pred ---------------------CCcceEeeccCcCCeEEeccccccCceEEEEEEecccc---chhhhhhhhccCcceeEE
Confidence 113455555422 555554 36679999999874 3233 345677 999999
Q ss_pred ecCCc--eeEecccceeeeeCCCeEEEEECCCce----EEEEeecCCCcEEEEEEc-C--CeEEEEeCCCcEEEEEccCC
Q 041206 216 SSNDT--RWNSKEEAAVFEFCGHTTRTWNLDNLE----CVQTLKGHSDTVTSLLFW-D--EYLFSSSLDETIKIWLYTHT 286 (371)
Q Consensus 216 ~~~~~--~l~~~~~~~~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~-~--~~l~s~~~dg~i~iwd~~~~ 286 (371)
|+|.. .|++| +.||.|.+||++... ++.++ .|...|.++.|. + +.+.+-+...+..+|++...
T Consensus 173 FHP~~pnlLlSG-------SvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 173 FHPSDPNLLLSG-------SVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred ecCCCCCeEEee-------cccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence 99976 38999 999999999997542 23333 377789999998 3 37889999999999998765
Q ss_pred CCccee----------------cceEEEEecCCCCEEEEecC-CCeEEEEEcC---Ccc---eeeeec--CCceEEEEEe
Q 041206 287 KNNAEL----------------SSLFGMLDAEAKPVLFSSGK-DSAIRLYELP---SFK---LRARIF--SRREVEVDQI 341 (371)
Q Consensus 287 ~~~~~~----------------~~~~~~~~~~~~~~l~~~~~-d~~i~iwd~~---~~~---~~~~~~--~~~~v~~~~~ 341 (371)
.+.... ..+.....+.+...++.++. -+...++-+. ++. .+..+. +..-|+++.|
T Consensus 245 ~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~ 324 (376)
T KOG1188|consen 245 SEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILF 324 (376)
T ss_pred ChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhh
Confidence 531111 12222334444445555444 5666666544 222 222222 3556888888
Q ss_pred CCCC-eEEeeCCCCcEEEEEc
Q 041206 342 GPAG-LFFPGDASGSVGVWKW 361 (371)
Q Consensus 342 s~~~-~l~~~~~dg~i~iw~~ 361 (371)
...+ .+.||+.||.+.+|..
T Consensus 325 ~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 325 DVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred hcccceeeccCCCceEEEEec
Confidence 7777 9999999999999995
No 169
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=3.5e-17 Score=150.59 Aligned_cols=259 Identities=19% Similarity=0.254 Sum_probs=190.5
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC----eeEEEee----cCCEE-EEecCCcEEEEEeCCC
Q 041206 96 KKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGA----EIGCLIS----EGSWV-FLGLPNAVKSWRVNAA 166 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~----~~~~~~~----~~~~~-~~~~~~~i~~~~~~~~ 166 (371)
..+-..+.|+|-...++++...-.|++||.+.++....|..+. .+..+.. +..++ +++.|+.|++|+--..
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 3456678899988899999877889999999999988887643 3554443 23344 4567999999975322
Q ss_pred ------Ce-----------------eEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc--ceEEEEecCC
Q 041206 167 ------SV-----------------NALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL--WFCSLSSSND 219 (371)
Q Consensus 167 ------~v-----------------~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~ 219 (371)
-| .-+.|... +|++++.-..|+|||.... ..+..+.... .++++.-+..
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E----~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKE----QVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccc----eeEeecccCCCccceeeccccc
Confidence 01 12344444 7777777889999999886 5555555444 7777766554
Q ss_pred c--eeEecccceeeeeCCCeEEEEECCCce---EEEEeecCCCc--EEEEEEc--C-CeEEEEeCCCcEEEEEccCCCCc
Q 041206 220 T--RWNSKEEAAVFEFCGHTTRTWNLDNLE---CVQTLKGHSDT--VTSLLFW--D-EYLFSSSLDETIKIWLYTHTKNN 289 (371)
Q Consensus 220 ~--~l~~~~~~~~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~--v~~~~~~--~-~~l~s~~~dg~i~iwd~~~~~~~ 289 (371)
. .+++| ..||.|++||.+... .+...+.|+.. |..+.+. | ..|++|+.||.|++||++.....
T Consensus 1220 ~gn~i~AG-------faDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e 1292 (1387)
T KOG1517|consen 1220 HGNIIAAG-------FADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE 1292 (1387)
T ss_pred CCceEEEe-------ecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccc
Confidence 3 37888 999999999998643 46777888887 8888887 2 36999999999999999984321
Q ss_pred cee--------c-ceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-------CCceEEEEEeCCCC-eEEeeCC
Q 041206 290 AEL--------S-SLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-------SRREVEVDQIGPAG-LFFPGDA 352 (371)
Q Consensus 290 ~~~--------~-~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~v~~~~~s~~~-~l~~~~~ 352 (371)
... . .++.+..+....++++|+. +.|.||++....+..... ....+.+++|+|.. .+|+|+.
T Consensus 1293 ~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~ 1371 (1387)
T KOG1517|consen 1293 TFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSA 1371 (1387)
T ss_pred ccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccC
Confidence 111 1 3667777888889999988 999999987643221111 14678999999999 9999999
Q ss_pred CCcEEEEEccccce
Q 041206 353 SGSVGVWKWLLAEQ 366 (371)
Q Consensus 353 dg~i~iw~~~~~~~ 366 (371)
|..|.||....++.
T Consensus 1372 Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1372 DSTVSIYSCEKPRL 1385 (1387)
T ss_pred CceEEEeecCCcCC
Confidence 99999999876653
No 170
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.79 E-value=2.7e-17 Score=136.33 Aligned_cols=245 Identities=16% Similarity=0.196 Sum_probs=177.2
Q ss_pred cCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEe
Q 041206 96 KKAVTNVGLPSGSN-KLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVN 174 (371)
Q Consensus 96 ~~~V~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~ 174 (371)
..+|..+.|.++.. .|+||+.|..|+||.+..+..-..- ..+. .+....-|+..|+++.|+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---~~V~---------------y~s~Ls~H~~aVN~vRf~ 74 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---MKVE---------------YLSSLSRHTRAVNVVRFS 74 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---eeEE---------------EeecccCCcceeEEEEEc
Confidence 46899999998666 9999999999999998755422100 0000 011122367789999999
Q ss_pred CC--EEEEEeCCCeEEEEecc--------C----CCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeE
Q 041206 175 ND--LLFAGSEGGVISVWKGT--------F----VANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTT 238 (371)
Q Consensus 175 ~~--~l~~~~~dg~v~iwd~~--------~----~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i 238 (371)
|+ .+++|+.+|.|.+|... + .++.+.....+.+|. .+..++|+|++. ++++ +.|+.+
T Consensus 75 p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~-------s~dns~ 147 (434)
T KOG1009|consen 75 PDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSG-------SVDNSV 147 (434)
T ss_pred CCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeee-------eccceE
Confidence 99 99999999999999766 2 012245667788888 999999999997 8899 999999
Q ss_pred EEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCC-----------------------------
Q 041206 239 RTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTK----------------------------- 287 (371)
Q Consensus 239 ~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~----------------------------- 287 (371)
++||+..|+.+..+..|...+..++|. ++++++-+.|...+.+++...+
T Consensus 148 ~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDe 227 (434)
T KOG1009|consen 148 RLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDE 227 (434)
T ss_pred EEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecC
Confidence 999999999999999999999999998 6788887777765555511000
Q ss_pred -----------------------------C--------------ccee----------cceEE---------------EE
Q 041206 288 -----------------------------N--------------NAEL----------SSLFG---------------ML 299 (371)
Q Consensus 288 -----------------------------~--------------~~~~----------~~~~~---------------~~ 299 (371)
. ..+. -.+.. .+
T Consensus 228 TlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~ 307 (434)
T KOG1009|consen 228 TLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLF 307 (434)
T ss_pred chhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecccccccccc
Confidence 0 0000 00000 11
Q ss_pred ecCCCCEEEEecCCCeEEEEEcCCcceeeeec--CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccce
Q 041206 300 DAEAKPVLFSSGKDSAIRLYELPSFKLRARIF--SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 300 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~ 366 (371)
.-+..-.++.+ ..+.|++||.++..++..+. |-..+++++|++|| .|+..|.||...+--++..++
T Consensus 308 ~lpyrlvfaiA-t~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 308 VLPYRLVFAIA-TKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred ccccceEEEEe-ecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 12223233444 44579999999988877765 67899999999999 999999999888877765543
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=7e-17 Score=130.30 Aligned_cols=241 Identities=16% Similarity=0.215 Sum_probs=176.8
Q ss_pred eCCccceEEEEEeccCC-CCccC---CceeeEeeeC-ccCCeEEEEEc-------CCCCEEEEEeCCCcEEEEECCCCce
Q 041206 63 YGDKCRFLHSWVHSVDG-DNTTN---SLATLMKLNG-HKKAVTNVGLP-------SGSNKLYSGSRDGRVSVWDRDSGRC 130 (371)
Q Consensus 63 ~~~~~~~i~~~~~~~~~-~~~~~---~~~~~~~l~~-h~~~V~~~~~~-------~~~~~l~s~~~dg~v~iwd~~~~~~ 130 (371)
....+..+++|+.-.+. ..... ..+...+++- ....|+..+|- |+..++|+.+.+.-|++||.-+|+.
T Consensus 66 ~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~l 145 (406)
T KOG2919|consen 66 SLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKL 145 (406)
T ss_pred eecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeecccccc
Confidence 35677889999966652 11111 1111222221 23467777764 6778999999999999999999998
Q ss_pred EEEEeCC--------CeeEEEeecCCEEEEecCCcEEEEEeCC-C------------------CeeEEEEeCC---EEEE
Q 041206 131 VNVITNG--------AEIGCLISEGSWVFLGLPNAVKSWRVNA-A------------------SVNALVVNND---LLFA 180 (371)
Q Consensus 131 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~------------------~v~~~~~~~~---~l~~ 180 (371)
...+..- ....++.+++..++++..+.|++||.+. + -+.+++++|. .+++
T Consensus 146 raSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~ 225 (406)
T KOG2919|consen 146 RASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAV 225 (406)
T ss_pred ccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceee
Confidence 8777642 2234556789999999999999999943 3 5778899987 8999
Q ss_pred EeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCC-ceEEEEeecCCC
Q 041206 181 GSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDN-LECVQTLKGHSD 257 (371)
Q Consensus 181 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~-~~~~~~~~~~~~ 257 (371)
|+....+-||.-... .++..+-+|. .|+.+.|.++|. |++| +-.|-.|..||++. +.++..+..|.+
T Consensus 226 gsY~q~~giy~~~~~----~pl~llggh~gGvThL~~~edGn~lfsG------aRk~dkIl~WDiR~~~~pv~~L~rhv~ 295 (406)
T KOG2919|consen 226 GSYGQRVGIYNDDGR----RPLQLLGGHGGGVTHLQWCEDGNKLFSG------ARKDDKILCWDIRYSRDPVYALERHVG 295 (406)
T ss_pred ecccceeeeEecCCC----CceeeecccCCCeeeEEeccCcCeeccc------ccCCCeEEEEeehhccchhhhhhhhcc
Confidence 999999999988777 7888999999 999999999995 8877 14578999999985 556778887876
Q ss_pred -cEEEEEEc----CCeEEEEeCCCcEEEEEccCCCCcc-----eecceEEEEecCCCCEEEEecCC
Q 041206 258 -TVTSLLFW----DEYLFSSSLDETIKIWLYTHTKNNA-----ELSSLFGMLDAEAKPVLFSSGKD 313 (371)
Q Consensus 258 -~v~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~d 313 (371)
.-..|.|. +++|++|+.||.|++||++...... ....+..+...|--+++++++..
T Consensus 296 ~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 296 DTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 44566666 7899999999999999988744311 11233444444445577776654
No 172
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.78 E-value=1.4e-19 Score=162.18 Aligned_cols=242 Identities=21% Similarity=0.321 Sum_probs=190.0
Q ss_pred CCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEe
Q 041206 84 NSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRV 163 (371)
Q Consensus 84 ~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 163 (371)
+..+.++.|.||.++|+|+.|...|.++++|+.|..|+||..+++.++.....
T Consensus 178 qkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rG--------------------------- 230 (1113)
T KOG0644|consen 178 QKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRG--------------------------- 230 (1113)
T ss_pred HHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCC---------------------------
Confidence 45667788999999999999999999999999999999999999999988876
Q ss_pred CCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEE
Q 041206 164 NAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRT 240 (371)
Q Consensus 164 ~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~i 240 (371)
|++.++.++.+.+ ++++++.|..|++|.+..+ .++..+++|. .|++++|+|- .+. +.||++++
T Consensus 231 hs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~----~pvsvLrghtgavtaiafsP~---~ss-------s~dgt~~~ 296 (1113)
T KOG0644|consen 231 HSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG----APVSVLRGHTGAVTAIAFSPR---ASS-------SDDGTCRI 296 (1113)
T ss_pred CccccchhccchhhhhhhhcccCceEEEEecCCC----chHHHHhccccceeeeccCcc---ccC-------CCCCceEe
Confidence 5567999999877 8999999999999999999 8999999999 9999999993 367 89999999
Q ss_pred EECCCceEEEEe----e-cCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcceecceEEEEecCCCCEEEEecCC
Q 041206 241 WNLDNLECVQTL----K-GHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAELSSLFGMLDAEAKPVLFSSGKD 313 (371)
Q Consensus 241 wd~~~~~~~~~~----~-~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 313 (371)
||.+ ..++... . ....-+.++.|. +..++|++.|+.-..|.+......... -+..-...+...+.+++-.+
T Consensus 297 wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~-lif~t~ssd~~~~~~~ar~~ 374 (1113)
T KOG0644|consen 297 WDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNL-LIFVTRSSDLSSIVVTARND 374 (1113)
T ss_pred cccc-ccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccc-eEEEeccccccccceeeeee
Confidence 9998 2222111 1 112344455554 678899999999998876544332221 11111122223467777778
Q ss_pred CeEEEEEcCCcceeeeec-CCceEEEEEeCCCC--eEEeeCCCCcEEEEEccccceec
Q 041206 314 SAIRLYELPSFKLRARIF-SRREVEVDQIGPAG--LFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 314 ~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~--~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
-.+.+|++.++.+...+. +..++..+.++|-+ ...+++.||...|||+-.+.+.+
T Consensus 375 ~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik 432 (1113)
T KOG0644|consen 375 HRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIK 432 (1113)
T ss_pred eEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcce
Confidence 889999999998887766 57899999999977 77789999999999998765543
No 173
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.78 E-value=3.4e-16 Score=141.05 Aligned_cols=241 Identities=16% Similarity=0.208 Sum_probs=179.5
Q ss_pred ceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCce--E-----EEEeCCCe
Q 041206 68 RFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPS-GSNKLYSGSRDGRVSVWDRDSGRC--V-----NVITNGAE 139 (371)
Q Consensus 68 ~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~--~-----~~~~~~~~ 139 (371)
..+.+|+ ..+..++-..+. -...|+++.|+| +..+++.|..+|.|.+||+..+.. . ....+..+
T Consensus 222 ~~~~vW~-------~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~ 293 (555)
T KOG1587|consen 222 GVLLVWS-------LKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEP 293 (555)
T ss_pred ceEEEEe-------cCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcC
Confidence 3688888 333345555554 357899999999 778899999999999999987765 2 22233455
Q ss_pred eEEEee-----cCCEEEEecCCcEEEEEeCCC-----------------------CeeEEEEeCC---EEEEEeCCCeEE
Q 041206 140 IGCLIS-----EGSWVFLGLPNAVKSWRVNAA-----------------------SVNALVVNND---LLFAGSEGGVIS 188 (371)
Q Consensus 140 ~~~~~~-----~~~~~~~~~~~~i~~~~~~~~-----------------------~v~~~~~~~~---~l~~~~~dg~v~ 188 (371)
+..+.+ +.+++.++.|+.|..|+++.- .+++++|.+. .+++|+..|.|.
T Consensus 294 v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~ 373 (555)
T KOG1587|consen 294 VTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVY 373 (555)
T ss_pred eEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEE
Confidence 655553 233666678999999987533 6788888665 999999999987
Q ss_pred EEeccCCCCc----ceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECC-CceEEEEeecCCCcEEE
Q 041206 189 VWKGTFVANP----FKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLD-NLECVQTLKGHSDTVTS 261 (371)
Q Consensus 189 iwd~~~~~~~----~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~ 261 (371)
-=+-...... ++....+..|. +|.++.++|-+. ++.. +.|.+++||... ...++..+..+...|++
T Consensus 374 ~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls-------~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~ 446 (555)
T KOG1587|consen 374 KGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLS-------VGDWTVRIWSEDVIASPLLSLDSSPDYVTD 446 (555)
T ss_pred EEeccCCcccccccccccccccccCcceEeeecCCCccceeee-------eccceeEeccccCCCCcchhhhhccceeee
Confidence 7433332221 23455666677 999999999774 4444 449999999988 77788888888889999
Q ss_pred EEEc---CCeEEEEeCCCcEEEEEccCCCCccee------cceEEEEecCCCCEEEEecCCCeEEEEEcCC
Q 041206 262 LLFW---DEYLFSSSLDETIKIWLYTHTKNNAEL------SSLFGMLDAEAKPVLFSSGKDSAIRLYELPS 323 (371)
Q Consensus 262 ~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 323 (371)
++|+ +..|+++..||.|.+||+......... ..+....+++.++.+++|...|.+++|++..
T Consensus 447 vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 447 VAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9999 678999999999999998776543222 3445567777677999999999999999964
No 174
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.78 E-value=7.1e-16 Score=126.67 Aligned_cols=220 Identities=19% Similarity=0.239 Sum_probs=157.6
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-EEEEeCCCeeEEEeecCCEEEE-ecC--CcEEEEEeCCC-----
Q 041206 96 KKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRC-VNVITNGAEIGCLISEGSWVFL-GLP--NAVKSWRVNAA----- 166 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~--~~i~~~~~~~~----- 166 (371)
...+..+.|+.+...|..|+.|| .++++.+.... -.....+..+..+.|...+++. +.+ +.+++++...+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe 83 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICE 83 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEE
Confidence 44577777999999999999999 88888776543 2223334456666777776654 444 44888888765
Q ss_pred -----CeeEEEEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecC---c-ceEEEEecCCce-eE--ecccceeeeeC
Q 041206 167 -----SVNALVVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAP---L-WFCSLSSSNDTR-WN--SKEEAAVFEFC 234 (371)
Q Consensus 167 -----~v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~---~-~v~~~~~~~~~~-l~--~~~~~~~~~~~ 234 (371)
+|.++.++.+.|+++-.+. |+|||+++. +++.++... . .+.++.+++.+. ++ .. ..
T Consensus 84 ~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~M----klLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s-------~t 151 (391)
T KOG2110|consen 84 IFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDM----KLLHTIETTPPNPKGLCALSPNNANCYLAYPGS-------TT 151 (391)
T ss_pred EecCCceEEEEEccceEEEEEccc-EEEEecccc----eeehhhhccCCCccceEeeccCCCCceEEecCC-------CC
Confidence 7788888888777776655 999999998 777777654 2 566677776654 33 23 55
Q ss_pred CCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcceecceEEEEecCCCCEEEEecC
Q 041206 235 GHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAELSSLFGMLDAEAKPVLFSSGK 312 (371)
Q Consensus 235 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 312 (371)
.|.|.+||..+.+++..+..|.+++.+++|+ |.+|||+|..|+|
T Consensus 152 ~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTV---------------------------------- 197 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTV---------------------------------- 197 (391)
T ss_pred CceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceE----------------------------------
Confidence 7999999999999999999999999999987 6677777766642
Q ss_pred CCeEEEEEcCCcceeeeecC---CceEEEEEeCCCC-eEEeeCCCCcEEEEEccccc
Q 041206 313 DSAIRLYELPSFKLRARIFS---RREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 313 d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~ 365 (371)
||||.+.+++.+.++.. ...|.+++|+|++ +|++.+..++|+||.++...
T Consensus 198 ---IRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 198 ---IRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred ---EEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 34444444555544442 3456778888888 77777777788888776544
No 175
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=4.5e-18 Score=146.17 Aligned_cols=239 Identities=14% Similarity=0.145 Sum_probs=164.2
Q ss_pred CceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeC
Q 041206 85 SLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVN 164 (371)
Q Consensus 85 ~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 164 (371)
...+.++|.||++.|+|+.|+.+|.+|++||.|-.+.|||.-..+.+..+..+ |
T Consensus 39 rL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~Tg--------------------------H 92 (758)
T KOG1310|consen 39 RLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTG--------------------------H 92 (758)
T ss_pred hcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecc--------------------------c
Confidence 34566789999999999999999999999999999999999888888777653 5
Q ss_pred CCCeeEEEEeCC----EEEEEeCCCeEEEEeccCCCC------cceeeEEEecCc-ceEEEEecCCc-e-eEecccceee
Q 041206 165 AASVNALVVNND----LLFAGSEGGVISVWKGTFVAN------PFKQVASIRAPL-WFCSLSSSNDT-R-WNSKEEAAVF 231 (371)
Q Consensus 165 ~~~v~~~~~~~~----~l~~~~~dg~v~iwd~~~~~~------~~~~~~~~~~~~-~v~~~~~~~~~-~-l~~~~~~~~~ 231 (371)
+..|.++.|-|. .+++|..|..|+++|+...+. .......+..|. .|..++..|++ . +.++
T Consensus 93 taNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsa------ 166 (758)
T KOG1310|consen 93 TANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSA------ 166 (758)
T ss_pred ccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEe------
Confidence 667999999876 899999999999999985321 225556677788 99999999988 3 8899
Q ss_pred eeCCCeEEEEECCCce-------EE---EEeecCCCcEEEEEEc---CCeEEEEeCCCcEEEEEccCCCCcceecceEEE
Q 041206 232 EFCGHTTRTWNLDNLE-------CV---QTLKGHSDTVTSLLFW---DEYLFSSSLDETIKIWLYTHTKNNAELSSLFGM 298 (371)
Q Consensus 232 ~~~dg~i~iwd~~~~~-------~~---~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 298 (371)
++||+|+-+|++... +. ..+....-...++..+ +.+|+.|+.|-..++||.+...+...-.... .
T Consensus 167 -sEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~-~ 244 (758)
T KOG1310|consen 167 -SEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTM-N 244 (758)
T ss_pred -cCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccc-c
Confidence 999999999998621 11 1111222345677776 6799999999999999964433221111110 0
Q ss_pred EecCCCCEEEEecCCCeEEEEEcCCcceeee-ec-CCceEEEEEeCCCC--eEEeeCCCCcEEEEEccccce
Q 041206 299 LDAEAKPVLFSSGKDSAIRLYELPSFKLRAR-IF-SRREVEVDQIGPAG--LFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 299 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~-~~~~v~~~~~s~~~--~l~~~~~dg~i~iw~~~~~~~ 366 (371)
+.++. .++.|+-|-...-+.... .. ....++-++|+|+| +|++-+. -.|+++++..++.
T Consensus 245 ~~pp~--------~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~g-EhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 245 TCPPK--------DCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGG-EHVYLFDVNEDKS 307 (758)
T ss_pred CCCCc--------ccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCC-eEEEEEeecCCCC
Confidence 11110 122233332221110000 00 12236778999999 5555544 4899999987653
No 176
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.77 E-value=9.5e-17 Score=149.88 Aligned_cols=269 Identities=14% Similarity=0.208 Sum_probs=186.0
Q ss_pred cCCceeeEeeeCccCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCC-------ceEEEEe-CCCeeEEE--eecCCEEE
Q 041206 83 TNSLATLMKLNGHKKAVTNVGLPSG-SNKLYSGSRDGRVSVWDRDSG-------RCVNVIT-NGAEIGCL--ISEGSWVF 151 (371)
Q Consensus 83 ~~~~~~~~~l~~h~~~V~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~-~~~~~~~~--~~~~~~~~ 151 (371)
...+.++..|..|+..|..++.++. +.+++|||.||+|++|+...- +...++. .+.++.++ ++.+..++
T Consensus 1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred CccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence 4678899999999999999999874 499999999999999997632 2333444 34444444 34555554
Q ss_pred -EecCCcEEEEEeCCC-------------------CeeEE-EEeC---C-EEEEEeCCCeEEEEeccCCCCcceeeEEEe
Q 041206 152 -LGLPNAVKSWRVNAA-------------------SVNAL-VVNN---D-LLFAGSEGGVISVWKGTFVANPFKQVASIR 206 (371)
Q Consensus 152 -~~~~~~i~~~~~~~~-------------------~v~~~-~~~~---~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 206 (371)
++.||.|.+.++... .+.++ ++.. . .++.++..+.|..||.+.....+. ++.-.
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~-lk~~~ 1193 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR-LKNQL 1193 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh-hhcCc
Confidence 467899999888662 22222 2221 1 678888899999999988632211 11122
Q ss_pred cCcceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEee-cCCCcEEEEEEc---C--CeEEEEe--CCCc
Q 041206 207 APLWFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLK-GHSDTVTSLLFW---D--EYLFSSS--LDET 277 (371)
Q Consensus 207 ~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~---~--~~l~s~~--~dg~ 277 (371)
.|..|++++.+|.+. ++.| +..|.+.+||++=+.++..++ ++..+|..+..+ + ...++++ ..+.
T Consensus 1194 ~hG~vTSi~idp~~~WlviG-------ts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne 1266 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIG-------TSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE 1266 (1431)
T ss_pred cccceeEEEecCCceEEEEe-------cCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc
Confidence 334899999999887 8889 999999999999888887765 445678877776 3 4555544 4778
Q ss_pred EEEEEccCCCCcc------------------------eecceEEEEecCCCCEEEEecCCCeEEEEEcCCccee------
Q 041206 278 IKIWLYTHTKNNA------------------------ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLR------ 327 (371)
Q Consensus 278 i~iwd~~~~~~~~------------------------~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~------ 327 (371)
|.+|++..+.... ....+.+ .....+.++.+|+.|..||.||....+..
T Consensus 1267 vs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~-~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~ 1345 (1431)
T KOG1240|consen 1267 VSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISC-GVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPG 1345 (1431)
T ss_pred eeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceee-ecccCCceeeecCCccceeeccCCCcccccccccC
Confidence 9999976554211 1111112 22333448999999999999997541111
Q ss_pred ------------------------------------------e---------eecCCceEEEEEeCCCC--eEEeeCCCC
Q 041206 328 ------------------------------------------A---------RIFSRREVEVDQIGPAG--LFFPGDASG 354 (371)
Q Consensus 328 ------------------------------------------~---------~~~~~~~v~~~~~s~~~--~l~~~~~dg 354 (371)
. ...|..+|+++++.... +|++++.||
T Consensus 1346 ~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG 1425 (1431)
T KOG1240|consen 1346 PSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDG 1425 (1431)
T ss_pred ccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCC
Confidence 0 00135678888887665 999999999
Q ss_pred cEEEEE
Q 041206 355 SVGVWK 360 (371)
Q Consensus 355 ~i~iw~ 360 (371)
.|+||.
T Consensus 1426 ~IkiWk 1431 (1431)
T KOG1240|consen 1426 VIKIWK 1431 (1431)
T ss_pred eeeecC
Confidence 999994
No 177
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.77 E-value=6.7e-14 Score=126.71 Aligned_cols=331 Identities=22% Similarity=0.347 Sum_probs=234.9
Q ss_pred cccCCCCceeeccCcc-------cccce-eEEEEEeecc-ceeeeee-eecceeeccceeeCCccceEEEEEeccCCCCc
Q 041206 13 HKHSEGGETMMSDDDD-------LMKGR-AEEREEMFGF-GLAAMAI-RVCNNWISDSCVYGDKCRFLHSWVHSVDGDNT 82 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d-------~~~~~-~~~~~~~h~~-~v~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (371)
..|.+.+..++.++.+ ...+. ....+..+.. .+..+.. .+... ......+..++.+..|+.
T Consensus 71 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~------- 141 (466)
T COG2319 71 IAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGN--SILLASSSLDGTVKLWDL------- 141 (466)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcc--eEEeccCCCCccEEEEEe-------
Confidence 4577888877776644 12232 4455555333 4444444 33222 111122344778999992
Q ss_pred cCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceEEEEeC-CCeeEEEee--cCC-EEEE-ecCC
Q 041206 83 TNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSR-DGRVSVWDRDSGRCVNVITN-GAEIGCLIS--EGS-WVFL-GLPN 156 (371)
Q Consensus 83 ~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~--~~~-~~~~-~~~~ 156 (371)
.........+.+|...|.+++|+|+++.+++++. |+.+++|+...+..+..+.. ...+.++.+ .+. .++. +.++
T Consensus 142 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~ 221 (466)
T COG2319 142 STPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDG 221 (466)
T ss_pred cCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCC
Confidence 2236788999999999999999999999999986 99999999998888887775 455666654 444 4444 5789
Q ss_pred cEEEEEeCCCCeeE----------E-EEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-
Q 041206 157 AVKSWRVNAASVNA----------L-VVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR- 221 (371)
Q Consensus 157 ~i~~~~~~~~~v~~----------~-~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~- 221 (371)
.+++|+...+.+.. + .|.++ .+++++.++.+++|++..... ....+..|. .+.++.+.|++.
T Consensus 222 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~ 298 (466)
T COG2319 222 TIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSS---LLRTLSGHSSSVLSVAFSPDGKL 298 (466)
T ss_pred cEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCc---EEEEEecCCccEEEEEECCCCCE
Confidence 99999876442222 1 56665 777899999999999997732 233335667 999999999664
Q ss_pred eEecccceeeeeCCCeEEEEECCCceEEEEee--cCCCcEEEEEEcC--CeEEEE-eCCCcEEEEEccCCCCccee---c
Q 041206 222 WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLK--GHSDTVTSLLFWD--EYLFSS-SLDETIKIWLYTHTKNNAEL---S 293 (371)
Q Consensus 222 l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~--~~l~s~-~~dg~i~iwd~~~~~~~~~~---~ 293 (371)
++++ +.|+.+.+||..+........ .|...+..+.+.+ ..++.+ ..|+.+.+|++......... .
T Consensus 299 ~~~~-------~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 371 (466)
T COG2319 299 LASG-------SSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS 371 (466)
T ss_pred EEEe-------eCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc
Confidence 6668 888889999999887776665 7888899998841 355555 68899999998776621111 1
Q ss_pred ceEEEEecCCCCEEEE-ecCCCeEEEEEcCCcceeeeecCC-ceEEEEEeCCCC-eEEeeCCCCcEEEEEccc
Q 041206 294 SLFGMLDAEAKPVLFS-SGKDSAIRLYELPSFKLRARIFSR-REVEVDQIGPAG-LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 294 ~~~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~ 363 (371)
.+......+. ..+.. +..++.+.+|+............. ..+....+++++ .+++++.++.+++|+...
T Consensus 372 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 372 NVLSVSFSPD-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred eEEEEEECCC-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 1233333333 34444 788999999999998888777766 899999999999 888899999999999876
No 178
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=6e-17 Score=133.92 Aligned_cols=197 Identities=16% Similarity=0.151 Sum_probs=153.9
Q ss_pred EEEeCCCCeeEEEEeCC---EEEEEeCCCeEEEEeccCCC---CcceeeEEEecCc-ceEEEEecCCce--eEeccccee
Q 041206 160 SWRVNAASVNALVVNND---LLFAGSEGGVISVWKGTFVA---NPFKQVASIRAPL-WFCSLSSSNDTR--WNSKEEAAV 230 (371)
Q Consensus 160 ~~~~~~~~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~-~v~~~~~~~~~~--l~~~~~~~~ 230 (371)
...-|+++|..++|+|. .+++|+.|.+|.||++..+. ...+++..+.+|+ .|..++|+|.-. |+++
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa----- 150 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA----- 150 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhc-----
Confidence 34458889999999986 89999999999999987643 2246788999999 999999999653 8888
Q ss_pred eeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcce------ecceEEEEecC
Q 041206 231 FEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAE------LSSLFGMLDAE 302 (371)
Q Consensus 231 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~------~~~~~~~~~~~ 302 (371)
+.|.+|.+|++.+++.+.++. |.+.|.++.|+ +.+|++.+.|.+|||||.+..+.... ......++..+
T Consensus 151 --g~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~ 227 (472)
T KOG0303|consen 151 --GSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLAS 227 (472)
T ss_pred --cCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEecc
Confidence 999999999999999998888 99999999999 89999999999999999877653111 11333445555
Q ss_pred CCCEEEEec---CCCeEEEEEcCCccee---eeecCCceEEEEEeCCCC--eEEeeCCCCcEEEEEccccc
Q 041206 303 AKPVLFSSG---KDSAIRLYELPSFKLR---ARIFSRREVEVDQIGPAG--LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 303 ~~~~l~~~~---~d~~i~iwd~~~~~~~---~~~~~~~~v~~~~~s~~~--~l~~~~~dg~i~iw~~~~~~ 365 (371)
+. ++-+|. .+..+-+||..+.+.. .++...+.|.-=-|.||. ..++|-.|+.|+.|.+....
T Consensus 228 g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 228 GK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred Cc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 44 454443 4678999998775533 333345666655677877 66677789999999998765
No 179
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.1e-17 Score=140.12 Aligned_cols=271 Identities=18% Similarity=0.180 Sum_probs=197.5
Q ss_pred CCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEE----Ee-e--cCCEEEEecCC
Q 041206 84 NSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGC----LI-S--EGSWVFLGLPN 156 (371)
Q Consensus 84 ~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~----~~-~--~~~~~~~~~~~ 156 (371)
....+...|.+|.+.|..+.|+..|..|+|||.|..|.+||+..++....+..+..... +. + +..++.++.++
T Consensus 130 qr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg 209 (559)
T KOG1334|consen 130 QRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDG 209 (559)
T ss_pred HHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccC
Confidence 44567788999999999999999999999999999999999999988777765322111 11 1 23333445566
Q ss_pred cEEE--------------EEeCCCCeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc----ceEEEE
Q 041206 157 AVKS--------------WRVNAASVNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL----WFCSLS 215 (371)
Q Consensus 157 ~i~~--------------~~~~~~~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~----~v~~~~ 215 (371)
.+++ ...|.++|.-++..|. -|.+++.|+.+.-+|++......... .-..+. ....++
T Consensus 210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~~~~~v~L~~Ia 288 (559)
T KOG1334|consen 210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREADEKERVGLYTIA 288 (559)
T ss_pred ceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-eeccCCccceeeeeEe
Confidence 5544 3346668888888777 89999999999999998874321111 112221 467888
Q ss_pred ecCCc--eeEecccceeeeeCCCeEEEEECCCce------EEEEeecC------CCcEEEEEEc--CCeEEEEeCCCcEE
Q 041206 216 SSNDT--RWNSKEEAAVFEFCGHTTRTWNLDNLE------CVQTLKGH------SDTVTSLLFW--DEYLFSSSLDETIK 279 (371)
Q Consensus 216 ~~~~~--~l~~~~~~~~~~~~dg~i~iwd~~~~~------~~~~~~~~------~~~v~~~~~~--~~~l~s~~~dg~i~ 279 (371)
..|.. .++++ +.|..+++||.+.-. .+..+..| .-.|++++|+ +.-|+++-.|-.|+
T Consensus 289 ~~P~nt~~faVg-------G~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IY 361 (559)
T KOG1334|consen 289 VDPRNTNEFAVG-------GSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIY 361 (559)
T ss_pred cCCCCccccccC-------ChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceE
Confidence 88865 48999 999999999987532 22333222 3478999998 56666777788899
Q ss_pred EEEccCCCC----------------------cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecC-CceE
Q 041206 280 IWLYTHTKN----------------------NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFS-RREV 336 (371)
Q Consensus 280 iwd~~~~~~----------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v 336 (371)
++.-....- ...+..+. ++.+...++++|+.-|.|.||+-.+++.+.-+.. ..-|
T Consensus 362 LF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVN--FfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VV 439 (559)
T KOG1334|consen 362 LFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVN--FFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVV 439 (559)
T ss_pred EeccccccCCCCCCCcchhhccchhhcccccccccceee--eccCccceEEecCccceEEEEecchhHHHHHhhcccceE
Confidence 996222110 11122333 6777777999999999999999999998877764 4588
Q ss_pred EEEEeCCCC-eEEeeCCCCcEEEEEcccc
Q 041206 337 EVDQIGPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 337 ~~~~~s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
+||.=+|.- .||+.+-|.-|+||-..+.
T Consensus 440 NCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 440 NCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred eccCCCCCCchhhccCCccceeeecCCcc
Confidence 999999988 9999999999999987543
No 180
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.1e-16 Score=129.02 Aligned_cols=190 Identities=16% Similarity=0.149 Sum_probs=135.3
Q ss_pred CCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEec--Cc-ceEEEEecCCce--eEecccceeeeeCCC
Q 041206 164 NAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRA--PL-WFCSLSSSNDTR--WNSKEEAAVFEFCGH 236 (371)
Q Consensus 164 ~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~-~v~~~~~~~~~~--l~~~~~~~~~~~~dg 236 (371)
|.+.|++++|+.+ .|++++.|+.|++|+++..... ..+.++. .. ..+.+.|.||.+ +++. -...
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~--eHr~~R~nve~dhpT~V~FapDc~s~vv~~-------~~g~ 155 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENK--EHRCIRQNVEYDHPTRVVFAPDCKSVVVSV-------KRGN 155 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhh--hhhHhhccccCCCceEEEECCCcceEEEEE-------ccCC
Confidence 6668999999988 9999999999999999875321 1111221 11 668899999986 5566 6778
Q ss_pred eEEEEECCCce---EEE---------EeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCccee----cceEEE
Q 041206 237 TTRTWNLDNLE---CVQ---------TLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAEL----SSLFGM 298 (371)
Q Consensus 237 ~i~iwd~~~~~---~~~---------~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~ 298 (371)
++++|-+...+ .-. .-+.|.-.+..+-.- +.+|++++.|..|.+|+++ ++....+ ......
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a 234 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA 234 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence 89999875322 110 112344455555444 5799999999999999988 4332222 122333
Q ss_pred EecCCCCEEEEecCCCeEEEEEcCCc--------ceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccc
Q 041206 299 LDAEAKPVLFSSGKDSAIRLYELPSF--------KLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 299 ~~~~~~~~l~~~~~d~~i~iwd~~~~--------~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~ 363 (371)
..+|+++++++++.--.|++|.+--. ..+.++. |...|..++|+|+. .+++.+.||+++|||..-
T Consensus 235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 55667779999999899999986422 1233344 57899999999999 999999999999999853
No 181
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.2e-15 Score=118.50 Aligned_cols=222 Identities=16% Similarity=0.230 Sum_probs=160.3
Q ss_pred cccCCCCceeeccCccc-----------------ccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEe
Q 041206 13 HKHSEGGETMMSDDDDL-----------------MKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVH 75 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d~-----------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 75 (371)
...||-+++|+.+..+. +....+..+++|...+..++|.. .++++ ..++.++.|..
T Consensus 16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d-~~Lls------~gdG~V~gw~W 88 (325)
T KOG0649|consen 16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD-DFLLS------GGDGLVYGWEW 88 (325)
T ss_pred HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh-hheee------ccCceEEEeee
Confidence 56789999998887661 12334455689999999999884 33333 44588888885
Q ss_pred ccCCCCccCCceeeEeee--Ccc-----CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCC
Q 041206 76 SVDGDNTTNSLATLMKLN--GHK-----KAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGS 148 (371)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~--~h~-----~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 148 (371)
....+.. ..+.+..++ -|. -.|++|...|..+-++.++.|+.++-||+++|+..++++.
T Consensus 89 ~E~~es~--~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rG------------ 154 (325)
T KOG0649|consen 89 NEEEESL--ATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRG------------ 154 (325)
T ss_pred hhhhhhc--cchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcC------------
Confidence 4332211 112222221 122 3689999999888888888999999999999999999886
Q ss_pred EEEEecCCcEEEEEeCCCCeeEEEEeC-C-EEEEEeCCCeEEEEeccCCCCcceeeEEEec---------Cc--ceEEEE
Q 041206 149 WVFLGLPNAVKSWRVNAASVNALVVNN-D-LLFAGSEGGVISVWKGTFVANPFKQVASIRA---------PL--WFCSLS 215 (371)
Q Consensus 149 ~~~~~~~~~i~~~~~~~~~v~~~~~~~-~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---------~~--~v~~~~ 215 (371)
|+..|.++.-.. + .+++|+.||++++||+++. +.+..+.. |. .|.+++
T Consensus 155 ---------------HtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~----k~v~~ie~yk~~~~lRp~~g~wigala 215 (325)
T KOG0649|consen 155 ---------------HTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQ----KHVSMIEPYKNPNLLRPDWGKWIGALA 215 (325)
T ss_pred ---------------CcceeeeeeecccCcceeecCCCccEEEEecccc----ceeEEeccccChhhcCcccCceeEEEe
Confidence 455688888743 3 9999999999999999998 45544432 22 455666
Q ss_pred ecCCceeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEcc
Q 041206 216 SSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYT 284 (371)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~ 284 (371)
.+.| .+.+ +....+.+|.++..++...|. ..+++..+.|..+.+++++..+.+.-|.+.
T Consensus 216 ~~ed--WlvC-------GgGp~lslwhLrsse~t~vfp-ipa~v~~v~F~~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 216 VNED--WLVC-------GGGPKLSLWHLRSSESTCVFP-IPARVHLVDFVDDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred ccCc--eEEe-------cCCCceeEEeccCCCceEEEe-cccceeEeeeecceEEEeccccceeeeeec
Confidence 5542 3334 567789999999999888776 567788999999999999988889888754
No 182
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.75 E-value=2.3e-14 Score=129.75 Aligned_cols=279 Identities=25% Similarity=0.389 Sum_probs=205.8
Q ss_pred EEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccC-CeEEEEE-cCCCC-EEEE
Q 041206 37 REEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKK-AVTNVGL-PSGSN-KLYS 113 (371)
Q Consensus 37 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~-~V~~~~~-~~~~~-~l~s 113 (371)
....|...+..+.+.+....+. .++.++.+..|+ .......+..+.++.. .+..+.+ ++++. +++.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~----~~~~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLL----SGSSDGTIKLWD-------LDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLA 128 (466)
T ss_pred eeeeccceEEEEEECCCCcEEE----EecCCCcEEEEE-------cCCCceeEEEEeccCCCceeeEEEECCCcceEEec
Confidence 4668888888888887655433 234788899999 2333236777777554 7888888 88887 5555
Q ss_pred EeC-CCcEEEEECCC-CceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeC-CCeEE
Q 041206 114 GSR-DGRVSVWDRDS-GRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSE-GGVIS 188 (371)
Q Consensus 114 ~~~-dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~-dg~v~ 188 (371)
.+. |+.+++|+... ......+.. |...|.+++++|+ .+++++. ++.++
T Consensus 129 ~~~~d~~~~~~~~~~~~~~~~~~~~---------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 181 (466)
T COG2319 129 SSSLDGTVKLWDLSTPGKLIRTLEG---------------------------HSESVTSLAFSPDGKLLASGSSLDGTIK 181 (466)
T ss_pred cCCCCccEEEEEecCCCeEEEEEec---------------------------CcccEEEEEECCCCCEEEecCCCCCceE
Confidence 454 99999999987 454444443 4446888999988 6777775 99999
Q ss_pred EEeccCCCCcceeeEEEecCc-ceEEEEecCCce--eEecccceeeeeCCCeEEEEECCCceEEE-EeecCCCcEEEEEE
Q 041206 189 VWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR--WNSKEEAAVFEFCGHTTRTWNLDNLECVQ-TLKGHSDTVTSLLF 264 (371)
Q Consensus 189 iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~ 264 (371)
+|+.... ..+..+..|. .+.+++++|++. ++++ +.|+.|++||...+..+. .+.+|.... ...|
T Consensus 182 ~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~ 249 (466)
T COG2319 182 LWDLRTG----KPLSTLAGHTDPVSSLAFSPDGGLLIASG-------SSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSF 249 (466)
T ss_pred EEEcCCC----ceEEeeccCCCceEEEEEcCCcceEEEEe-------cCCCcEEEEECCCCcEEeeecCCCCcce-eEeE
Confidence 9999986 7788888888 999999999885 5565 889999999999888887 688888875 3366
Q ss_pred c--CCeEEEEeCCCcEEEEEccCCCC-----cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec---CCc
Q 041206 265 W--DEYLFSSSLDETIKIWLYTHTKN-----NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF---SRR 334 (371)
Q Consensus 265 ~--~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~ 334 (371)
. +.++++++.|+.+++|+...... ..+...+....+.+....+++++.|+.+++||........... +..
T Consensus 250 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 329 (466)
T COG2319 250 SPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG 329 (466)
T ss_pred CCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCC
Confidence 6 56888999999999999876554 1112344444555545577778888899999998877655553 455
Q ss_pred eEEEEEeCCCC-eEEee-CCCCcEEEEEccccc
Q 041206 335 EVEVDQIGPAG-LFFPG-DASGSVGVWKWLLAE 365 (371)
Q Consensus 335 ~v~~~~~s~~~-~l~~~-~~dg~i~iw~~~~~~ 365 (371)
.+..+.+.+++ .++.+ ..|+.+.+|++....
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 330 PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred ceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 68999985453 44444 688999999987654
No 183
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.75 E-value=5.8e-17 Score=128.82 Aligned_cols=194 Identities=14% Similarity=0.154 Sum_probs=147.5
Q ss_pred eccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEee-----eCccCCeEEEEEcC--CCCEEEE
Q 041206 41 FGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKL-----NGHKKAVTNVGLPS--GSNKLYS 113 (371)
Q Consensus 41 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l-----~~h~~~V~~~~~~~--~~~~l~s 113 (371)
+-..|.|+.+.|...-+. .-.+..|.+|+ ..++.+.+..+ .+|+...++-+|+| +++.+++
T Consensus 122 avg~i~cvew~Pns~kla-----sm~dn~i~l~~-------l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t 189 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSDKLA-----SMDDNNIVLWS-------LDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT 189 (370)
T ss_pred HhCceeeEEEcCCCCeeE-----EeccCceEEEE-------cccCcchheeecccccccccceecccccCCCCccceEEE
Confidence 344677788888433222 22367788888 33444433333 23677889999999 8888888
Q ss_pred EeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC---EEEEEeCCCeEEEE
Q 041206 114 GSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND---LLFAGSEGGVISVW 190 (371)
Q Consensus 114 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~---~l~~~~~dg~v~iw 190 (371)
.+ |+++..||+++.++...+. |.|...|..+.|+|+ +|++++.||.|++|
T Consensus 190 t~-d~tl~~~D~RT~~~~~sI~--------------------------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriW 242 (370)
T KOG1007|consen 190 TS-DSTLQFWDLRTMKKNNSIE--------------------------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIW 242 (370)
T ss_pred eC-CCcEEEEEccchhhhcchh--------------------------hhhcceeeeccCCCCceEEEEEcCCCccEEEE
Confidence 75 7899999999888766655 235556999999999 89999999999999
Q ss_pred eccCCCCcceeeEEEecCc-ceEEEEecCCc--eeEecccceeeeeCCCeEEEEECCC----------------------
Q 041206 191 KGTFVANPFKQVASIRAPL-WFCSLSSSNDT--RWNSKEEAAVFEFCGHTTRTWNLDN---------------------- 245 (371)
Q Consensus 191 d~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~--~l~~~~~~~~~~~~dg~i~iwd~~~---------------------- 245 (371)
|.+..+ .++..+.+|. .|.++.|+|.. .+++| +.|..|.+|....
T Consensus 243 D~R~tk---~pv~el~~HsHWvW~VRfn~~hdqLiLs~-------~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dse 312 (370)
T KOG1007|consen 243 DTRKTK---FPVQELPGHSHWVWAVRFNPEHDQLILSG-------GSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSE 312 (370)
T ss_pred eccCCC---ccccccCCCceEEEEEEecCccceEEEec-------CCCceeEEEeccccccccccccccccccCcchhhH
Confidence 999875 6888999999 99999999954 48899 9999999987642
Q ss_pred -------ceEEEEeecCCCcEEEEEEc---CCeEEEEeCCCcEEEEEc
Q 041206 246 -------LECVQTLKGHSDTVTSLLFW---DEYLFSSSLDETIKIWLY 283 (371)
Q Consensus 246 -------~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~ 283 (371)
...+.++..|.+.|++++|+ |=.|++-+.||.+.|=.+
T Consensus 313 er~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 313 ERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred HhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 11234677799999999998 558888999998877554
No 184
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=6.6e-16 Score=127.84 Aligned_cols=288 Identities=12% Similarity=0.109 Sum_probs=202.1
Q ss_pred EEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeC-ccCCeEEEEEcCCCCEEEEE
Q 041206 36 EREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNG-HKKAVTNVGLPSGSNKLYSG 114 (371)
Q Consensus 36 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~~~~~~~l~s~ 114 (371)
+.+.+|..-|.++.|+....|+. +|+.+....+|.... .......+++..... |...|.|++|....++|++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~----SGGDD~~~~~W~~de--~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG 123 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLA----SGGDDMHGRVWNVDE--LMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSG 123 (609)
T ss_pred hhhhhhccccceeeeccCCeEEe----ecCCcceeeeechHH--HHhhcCCCCceeccCccccceEEEEEccCCeeEecC
Confidence 44779999999999998777654 578899999998321 111233456655543 55899999999999999999
Q ss_pred eCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEec
Q 041206 115 SRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVWKG 192 (371)
Q Consensus 115 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~ 192 (371)
..+++|.+.|+++.+.+..+.+.. ..+.|+.+..+|. .+++.+.++.|.+||.
T Consensus 124 ~~~~~VI~HDiEt~qsi~V~~~~~-------------------------~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~ 178 (609)
T KOG4227|consen 124 ERWGTVIKHDIETKQSIYVANENN-------------------------NRGDVYHMDQHPTDNTLIVVTRAKLVSFIDN 178 (609)
T ss_pred CCcceeEeeecccceeeeeecccC-------------------------cccceeecccCCCCceEEEEecCceEEEEec
Confidence 999999999999999888877533 2346888888887 8999999999999999
Q ss_pred cCCCCcceeeEEEecCcceEEEEecCCce--eEecccceeeeeCCCeEEEEECCCceE-EEE------eecCCCcEEEEE
Q 041206 193 TFVANPFKQVASIRAPLWFCSLSSSNDTR--WNSKEEAAVFEFCGHTTRTWNLDNLEC-VQT------LKGHSDTVTSLL 263 (371)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~iwd~~~~~~-~~~------~~~~~~~v~~~~ 263 (371)
+....+..++..-.......++.|+|... +++. +..+-+-+||.+..+. +.. ++.....-.++.
T Consensus 179 Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~-------~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~ 251 (609)
T KOG4227|consen 179 RDRQNPISLVLPANSGKNFYTAEFHPETPALILVN-------SETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSL 251 (609)
T ss_pred cCCCCCCceeeecCCCccceeeeecCCCceeEEec-------cccCCCCceeeccccchHHhhhccccCcccchhhhhee
Confidence 98754333332222222788899999763 6777 8889999999985432 211 111111224566
Q ss_pred Ec--CCeEEEEeCCCcEEEEEccCCCC-----------cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcc-----
Q 041206 264 FW--DEYLFSSSLDETIKIWLYTHTKN-----------NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFK----- 325 (371)
Q Consensus 264 ~~--~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----- 325 (371)
|+ ++.|++--....-.+||+-..+. .-.+..+..+.+..+. .+++|+.+-.|++|.+....
T Consensus 252 ~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~ 330 (609)
T KOG4227|consen 252 WSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGF 330 (609)
T ss_pred eCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCc
Confidence 76 66777666555566666544221 1112234445555555 59999999999999886411
Q ss_pred -ee-----------------eeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcc
Q 041206 326 -LR-----------------ARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 326 -~~-----------------~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~ 362 (371)
.+ ..+. |..-++.+.|+|.. +|++.+..+.+++|.-.
T Consensus 331 ~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 331 TQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred cccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 11 1122 46678999999999 99999999999999754
No 185
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.74 E-value=7.4e-16 Score=122.70 Aligned_cols=244 Identities=13% Similarity=0.142 Sum_probs=168.8
Q ss_pred CceeeEeeeCccCCeEEEEEcC---CCCEEEEEeC----CCcEEEEEC--CCCceEEEEeCCCeeEEEeecCCEEEEecC
Q 041206 85 SLATLMKLNGHKKAVTNVGLPS---GSNKLYSGSR----DGRVSVWDR--DSGRCVNVITNGAEIGCLISEGSWVFLGLP 155 (371)
Q Consensus 85 ~~~~~~~l~~h~~~V~~~~~~~---~~~~l~s~~~----dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (371)
..+.+..+..+ -.+.++.|+. ...+||.|+. ...|.|-.+ ++++.+......
T Consensus 34 r~~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd------------------ 94 (364)
T KOG0290|consen 34 RRKEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFD------------------ 94 (364)
T ss_pred ccceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCC------------------
Confidence 34556666654 4588999984 3346888873 334444433 233332221100
Q ss_pred CcEEEEEeCCCCeeEEEEeCC-------EEEEEeCCCeEEEEeccCCCCcceeeEEEe-----cCc-ceEEEEecCCc--
Q 041206 156 NAVKSWRVNAASVNALVVNND-------LLFAGSEGGVISVWKGTFVANPFKQVASIR-----APL-WFCSLSSSNDT-- 220 (371)
Q Consensus 156 ~~i~~~~~~~~~v~~~~~~~~-------~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----~~~-~v~~~~~~~~~-- 220 (371)
|.-+++.+.|.|+ +|++. +..+++|.+.......++...+. .+. +++++.|+.-.
T Consensus 95 --------~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~ 164 (364)
T KOG0290|consen 95 --------HPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN 164 (364)
T ss_pred --------CCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc
Confidence 2335777888776 44443 45899999875433222222222 223 88999998744
Q ss_pred eeEecccceeeeeCCCeEEEEECCCce---EEEEeecCCCcEEEEEEc---CCeEEEEeCCCcEEEEEccCCCCccee--
Q 041206 221 RWNSKEEAAVFEFCGHTTRTWNLDNLE---CVQTLKGHSDTVTSLLFW---DEYLFSSSLDETIKIWLYTHTKNNAEL-- 292 (371)
Q Consensus 221 ~l~~~~~~~~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~-- 292 (371)
.+.++ +-|-+..|||++++. ...++-.|..+|..++|. -+.|++.+.||.+|+||++..+|...+
T Consensus 165 ~igtS-------SiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE 237 (364)
T KOG0290|consen 165 LIGTS-------SIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE 237 (364)
T ss_pred eeEee-------cccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec
Confidence 37788 999999999999863 356677899999999998 369999999999999999988874333
Q ss_pred -----cc-eEEEEecCCCCEEEEecCC-CeEEEEEcCCc-ceeeeec-CCceEEEEEeCCCC--eEEeeCCCCcEEEEEc
Q 041206 293 -----SS-LFGMLDAEAKPVLFSSGKD-SAIRLYELPSF-KLRARIF-SRREVEVDQIGPAG--LFFPGDASGSVGVWKW 361 (371)
Q Consensus 293 -----~~-~~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~-~~~~~~~-~~~~v~~~~~s~~~--~l~~~~~dg~i~iw~~ 361 (371)
.. +...+...+.+++++-..| ..|.|.|++.. .++.++. |.+.|+.++|.|.. .|.+++.|..+.+||+
T Consensus 238 ~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl 317 (364)
T KOG0290|consen 238 DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDL 317 (364)
T ss_pred CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEec
Confidence 11 2223555566677776655 56999999875 4566665 78999999999988 9999999999999999
Q ss_pred ccc
Q 041206 362 LLA 364 (371)
Q Consensus 362 ~~~ 364 (371)
...
T Consensus 318 ~q~ 320 (364)
T KOG0290|consen 318 QQM 320 (364)
T ss_pred ccc
Confidence 753
No 186
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.1e-15 Score=136.70 Aligned_cols=303 Identities=13% Similarity=0.172 Sum_probs=201.2
Q ss_pred cccCCCCceeeccCcc------cccce-eE---EEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCc
Q 041206 13 HKHSEGGETMMSDDDD------LMKGR-AE---EREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNT 82 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d------~~~~~-~~---~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (371)
.++++.|+...+.-+. .+++. .. ..-..|+..+++.+++|+...++ .+..++-|.+|+-...
T Consensus 166 I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~A----a~d~dGrI~vw~d~~~---- 237 (792)
T KOG1963|consen 166 IVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLA----AGDSDGRILVWRDFGS---- 237 (792)
T ss_pred EEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEE----EeccCCcEEEEecccc----
Confidence 3467777766555433 22211 11 01234566678889999777654 4566677999982210
Q ss_pred cCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEE
Q 041206 83 TNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWR 162 (371)
Q Consensus 83 ~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 162 (371)
.......+.|+=|.+.|++++|+++|.+|+||+..|.+.+|.+++++.....+.+.
T Consensus 238 ~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs------------------------ 293 (792)
T KOG1963|consen 238 SDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGS------------------------ 293 (792)
T ss_pred ccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCC------------------------
Confidence 12234466788899999999999999999999999999999999998443333333
Q ss_pred eCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecC-----------c-ceEEEEecC-CceeEeccc
Q 041206 163 VNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAP-----------L-WFCSLSSSN-DTRWNSKEE 227 (371)
Q Consensus 163 ~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-----------~-~v~~~~~~~-~~~l~~~~~ 227 (371)
+|..+.++|+ +.+....|+.|.+....+.. ...++.+. . -.+.++++| .+.++-.
T Consensus 294 ----~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~----~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln-- 363 (792)
T KOG1963|consen 294 ----PILHIVVSPDSDLYSLVLEDNQIHLIKASDLE----IKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLN-- 363 (792)
T ss_pred ----eeEEEEEcCCCCeEEEEecCceEEEEeccchh----hhhhccCccCCCccccccccccceeEEEcCCCCceeec--
Confidence 3788888888 77888889999998776542 22222211 2 456677777 3346666
Q ss_pred ceeeeeCCCeEEEEECCCceEEEEee-----cCC------CcEEEEEEc--CCeEEEEe--------CC--CcEEEEEcc
Q 041206 228 AAVFEFCGHTTRTWNLDNLECVQTLK-----GHS------DTVTSLLFW--DEYLFSSS--------LD--ETIKIWLYT 284 (371)
Q Consensus 228 ~~~~~~~dg~i~iwd~~~~~~~~~~~-----~~~------~~v~~~~~~--~~~l~s~~--------~d--g~i~iwd~~ 284 (371)
+..|.|++||+-+.+.++.++ .+. -.++.++.+ +++++|.- .| -.+++|-..
T Consensus 364 -----~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 364 -----GHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred -----CCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 889999999998877766553 122 245555555 77887753 23 357888854
Q ss_pred CCCC-----------cceecceEEEEecC-CCCEEEEecCCCeEEEEEcCCcceee-----------eecCCceEEEEEe
Q 041206 285 HTKN-----------NAELSSLFGMLDAE-AKPVLFSSGKDSAIRLYELPSFKLRA-----------RIFSRREVEVDQI 341 (371)
Q Consensus 285 ~~~~-----------~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~-----------~~~~~~~v~~~~~ 341 (371)
.... .+.. .+..++.++ ....+++++.||.++||-+...+.+. ..++..++++++|
T Consensus 439 ~~~kt~~L~T~I~~PH~~~-~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~f 517 (792)
T KOG1963|consen 439 PNSKTFILNTKINNPHGNA-FVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCF 517 (792)
T ss_pred CCcceeEEEEEEecCCCce-eEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhh
Confidence 4332 1111 222223333 33389999999999999884422111 1125789999999
Q ss_pred CCCCeEEeeCCCCcEEEEEccc
Q 041206 342 GPAGLFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 342 s~~~~l~~~~~dg~i~iw~~~~ 363 (371)
+.||.+++.+.|+.|.+||..+
T Consensus 518 s~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 518 SQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred cCCCcEEEEecCCEEEEecCCC
Confidence 9999777777899999999988
No 187
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=2.1e-15 Score=120.12 Aligned_cols=233 Identities=14% Similarity=0.135 Sum_probs=163.0
Q ss_pred CccCCeEEEEEcCCC-----CEEEEEeCCCcEEEEECCCCceEEE----EeCCCeeEEEeecCCEEEEecCCcEEEEEeC
Q 041206 94 GHKKAVTNVGLPSGS-----NKLYSGSRDGRVSVWDRDSGRCVNV----ITNGAEIGCLISEGSWVFLGLPNAVKSWRVN 164 (371)
Q Consensus 94 ~h~~~V~~~~~~~~~-----~~l~s~~~dg~v~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 164 (371)
.|.-+++.+.|.|+. ++|||++ ..+|+|.+...+.... +...... -.
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns----------------------~~ 149 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNS----------------------EF 149 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCccc----------------------cc
Confidence 589999999999976 3566655 3599999874321111 1110000 02
Q ss_pred CCCeeEEEEeC---CEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce--eEecccceeeeeCCCeE
Q 041206 165 AASVNALVVNN---DLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR--WNSKEEAAVFEFCGHTT 238 (371)
Q Consensus 165 ~~~v~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i 238 (371)
..+++++.|+. +++.+.+-|-+..|||++++.. ......+-.|. +|..++|...+. +++. +.||.+
T Consensus 150 ~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~-~~vkTQLIAHDKEV~DIaf~~~s~~~FASv-------gaDGSv 221 (364)
T KOG0290|consen 150 CAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS-GTVKTQLIAHDKEVYDIAFLKGSRDVFASV-------GADGSV 221 (364)
T ss_pred CCcccccccccCCcceeEeecccCeEEEEEEeeccc-cceeeEEEecCcceeEEEeccCccceEEEe-------cCCCcE
Confidence 23688888864 4999999999999999998621 12345667788 999999999764 8899 999999
Q ss_pred EEEECCCceEEEEe---ecCCCcEEEEEEc---CCeEEEEeCCC-cEEEEEccCCCC-----cceecceEEE-EecCCCC
Q 041206 239 RTWNLDNLECVQTL---KGHSDTVTSLLFW---DEYLFSSSLDE-TIKIWLYTHTKN-----NAELSSLFGM-LDAEAKP 305 (371)
Q Consensus 239 ~iwd~~~~~~~~~~---~~~~~~v~~~~~~---~~~l~s~~~dg-~i~iwd~~~~~~-----~~~~~~~~~~-~~~~~~~ 305 (371)
++||++..+.-..+ .....+...++|+ ++++++-..|. .|.+.|++.+.. .++...+.++ +.|....
T Consensus 222 RmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~ 301 (364)
T KOG0290|consen 222 RMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSS 301 (364)
T ss_pred EEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCc
Confidence 99999976543322 2235688899998 68999877664 699999887653 2233334443 4455566
Q ss_pred EEEEecCCCeEEEEEcCCcc------eeeeecCCceEEEEEeCCCC--eEEeeCCCCcEEEE
Q 041206 306 VLFSSGKDSAIRLYELPSFK------LRARIFSRREVEVDQIGPAG--LFFPGDASGSVGVW 359 (371)
Q Consensus 306 ~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~v~~~~~s~~~--~l~~~~~dg~i~iw 359 (371)
.|++++.|..+.+||+...- ++..+...++|+.+.|++.. .++.+. ++++.+.
T Consensus 302 hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~-~kkleiL 362 (364)
T KOG0290|consen 302 HICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF-GKKLEIL 362 (364)
T ss_pred eeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe-cCeeeEE
Confidence 89999999999999997643 22333357899999999765 777664 4455443
No 188
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=5.1e-18 Score=152.39 Aligned_cols=283 Identities=13% Similarity=0.190 Sum_probs=209.0
Q ss_pred cccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCC
Q 041206 29 LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGS 108 (371)
Q Consensus 29 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~ 108 (371)
+.+.+.+..+.+|..+|.|.++......+ +.|+.+..+++|+ ..+..++..++||++.|+.++.+.+.
T Consensus 177 vqkmk~ikrLlgH~naVyca~fDrtg~~I----itgsdd~lvKiwS--------~et~~~lAs~rGhs~ditdlavs~~n 244 (1113)
T KOG0644|consen 177 VQKMKNIKRLLGHRNAVYCAIFDRTGRYI----ITGSDDRLVKIWS--------METARCLASCRGHSGDITDLAVSSNN 244 (1113)
T ss_pred HHHHHHHHHHHhhhhheeeeeeccccceE----eecCccceeeeee--------ccchhhhccCCCCccccchhccchhh
Confidence 44567778889999999999987654432 3488999999999 46678899999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCCEEEEEeCCCeEE
Q 041206 109 NKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNNDLLFAGSEGGVIS 188 (371)
Q Consensus 109 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~l~~~~~dg~v~ 188 (371)
.+++++|.|..|++|.+.++.++..+.. |++.|++++|+|.. +.+.||+++
T Consensus 245 ~~iaaaS~D~vIrvWrl~~~~pvsvLrg---------------------------htgavtaiafsP~~--sss~dgt~~ 295 (1113)
T KOG0644|consen 245 TMIAAASNDKVIRVWRLPDGAPVSVLRG---------------------------HTGAVTAIAFSPRA--SSSDDGTCR 295 (1113)
T ss_pred hhhhhcccCceEEEEecCCCchHHHHhc---------------------------cccceeeeccCccc--cCCCCCceE
Confidence 9999999999999999999998887775 77889999999975 778899999
Q ss_pred EEeccCCCCcceeeE--EEecCcceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc
Q 041206 189 VWKGTFVANPFKQVA--SIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW 265 (371)
Q Consensus 189 iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 265 (371)
+||.+-.... .... .+.....+.++.+...+. ++++ +.|+....|.+.... .+...+.-+.++
T Consensus 296 ~wd~r~~~~~-y~prp~~~~~~~~~~s~~~~~~~~~f~Tg-------s~d~ea~n~e~~~l~------~~~~~lif~t~s 361 (1113)
T KOG0644|consen 296 IWDARLEPRI-YVPRPLKFTEKDLVDSILFENNGDRFLTG-------SRDGEARNHEFEQLA------WRSNLLIFVTRS 361 (1113)
T ss_pred eccccccccc-cCCCCCCcccccceeeeeccccccccccc-------cCCcccccchhhHhh------hhccceEEEecc
Confidence 9998821100 0001 111222566777777664 8999 999999888765321 122222222222
Q ss_pred ---CCeEEEEeCCCcEEEEEccCCCCcce----ecceEEE-EecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceE
Q 041206 266 ---DEYLFSSSLDETIKIWLYTHTKNNAE----LSSLFGM-LDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREV 336 (371)
Q Consensus 266 ---~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~-~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v 336 (371)
..+.+++-.+..+.+|++........ ......+ +.+-+..+..+++.||...|||+-.+.++.... .+..+
T Consensus 362 sd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl 441 (1113)
T KOG0644|consen 362 SDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKL 441 (1113)
T ss_pred ccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccccee
Confidence 35677777888899999877643211 1122222 334445566788999999999999988777665 57788
Q ss_pred EEEEeCCCC-eEEeeCCCCcEEEEEccccce
Q 041206 337 EVDQIGPAG-LFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 337 ~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~ 366 (371)
..-+||+|| .++....-|.++|.....++.
T Consensus 442 ~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 442 VDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred eccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 889999999 888888889999988765543
No 189
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=2.9e-14 Score=125.02 Aligned_cols=257 Identities=14% Similarity=0.185 Sum_probs=161.0
Q ss_pred CCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEe-CCCcEEEEECC-CCce--EEEEeCCCe
Q 041206 64 GDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGS-RDGRVSVWDRD-SGRC--VNVITNGAE 139 (371)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~-~dg~v~iwd~~-~~~~--~~~~~~~~~ 139 (371)
...++.|..|++..+ ...+.+..+. +.+....++++|++++|+.++ .++.|.+|+++ +++. ......
T Consensus 8 ~~~~~~I~~~~~~~~-----g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~--- 78 (330)
T PRK11028 8 SPESQQIHVWNLNHE-----GALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPL--- 78 (330)
T ss_pred cCCCCCEEEEEECCC-----CceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecC---
Confidence 355678899985211 1234566665 345677899999999987764 57889999986 3332 121111
Q ss_pred eEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEe-CCCeEEEEeccCCCCcceeeEEEecCcceEEEEe
Q 041206 140 IGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGS-EGGVISVWKGTFVANPFKQVASIRAPLWFCSLSS 216 (371)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 216 (371)
.+....++++|+ ++++++ .++.|.+|++.+.....+....+.......++++
T Consensus 79 -------------------------~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~ 133 (330)
T PRK11028 79 -------------------------PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANI 133 (330)
T ss_pred -------------------------CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEe
Confidence 113567888877 566555 4889999999753211123333333335677889
Q ss_pred cCCce-e-EecccceeeeeCCCeEEEEECCCceEEE-------EeecCCCcEEEEEEc--CCeEEEEeC-CCcEEEEEcc
Q 041206 217 SNDTR-W-NSKEEAAVFEFCGHTTRTWNLDNLECVQ-------TLKGHSDTVTSLLFW--DEYLFSSSL-DETIKIWLYT 284 (371)
Q Consensus 217 ~~~~~-l-~~~~~~~~~~~~dg~i~iwd~~~~~~~~-------~~~~~~~~v~~~~~~--~~~l~s~~~-dg~i~iwd~~ 284 (371)
+|+++ + ++. ..++.|.+||+.+...+. .... ......+.|+ +++++++.. +++|.+|++.
T Consensus 134 ~p~g~~l~v~~-------~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 134 DPDNRTLWVPC-------LKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred CCCCCEEEEee-------CCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 99986 4 455 677999999998633221 1111 2345678888 567777765 8999999987
Q ss_pred CCC-Ccceecc-------------eEEEEecCCCCEEEEec-CCCeEEEEEcCCcc----eeeeecCCceEEEEEeCCCC
Q 041206 285 HTK-NNAELSS-------------LFGMLDAEAKPVLFSSG-KDSAIRLYELPSFK----LRARIFSRREVEVDQIGPAG 345 (371)
Q Consensus 285 ~~~-~~~~~~~-------------~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~----~~~~~~~~~~v~~~~~s~~~ 345 (371)
... ....... ...+...+++++++++. .++.|.+|++.... .+...........+.++|+|
T Consensus 206 ~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg 285 (330)
T PRK11028 206 DPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSG 285 (330)
T ss_pred CCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCC
Confidence 421 1001100 11233445566777764 47899999986543 22222223355689999999
Q ss_pred -eEEeeC-CCCcEEEEEcc
Q 041206 346 -LFFPGD-ASGSVGVWKWL 362 (371)
Q Consensus 346 -~l~~~~-~dg~i~iw~~~ 362 (371)
+|+++. .+++|.+|++.
T Consensus 286 ~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 286 KYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CEEEEEEccCCcEEEEEEc
Confidence 555544 58999999885
No 190
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=9.7e-16 Score=126.86 Aligned_cols=237 Identities=8% Similarity=0.079 Sum_probs=171.7
Q ss_pred eEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC------ceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEE
Q 041206 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSG------RCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWR 162 (371)
Q Consensus 89 ~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 162 (371)
.+.+.+|.+.|+++.|+.++++|++|+.|..+++|+++.. +++....++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~------------------------- 103 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHP------------------------- 103 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCc-------------------------
Confidence 4567899999999999999999999999999999998643 222222221
Q ss_pred eCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc---ceEEEEecCCc-eeEecccceeeeeCCC
Q 041206 163 VNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL---WFCSLSSSNDT-RWNSKEEAAVFEFCGH 236 (371)
Q Consensus 163 ~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~-~l~~~~~~~~~~~~dg 236 (371)
|...|.|++|+.. ++++|..+++|..-|+++. +.+..+.... .|..+..+|.. .+++. +.++
T Consensus 104 -H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~----qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~-------t~~~ 171 (609)
T KOG4227|consen 104 -HRSNIFSLEFDLENRFLYSGERWGTVIKHDIETK----QSIYVANENNNRGDVYHMDQHPTDNTLIVV-------TRAK 171 (609)
T ss_pred -cccceEEEEEccCCeeEecCCCcceeEeeecccc----eeeeeecccCcccceeecccCCCCceEEEE-------ecCc
Confidence 4457999999866 9999999999999999998 6666655444 89999999954 58888 9999
Q ss_pred eEEEEECCCce-EEE--EeecCCCcEEEEEEc---CCeEEEEeCCCcEEEEEccCCCCc--------c----eecceEEE
Q 041206 237 TTRTWNLDNLE-CVQ--TLKGHSDTVTSLLFW---DEYLFSSSLDETIKIWLYTHTKNN--------A----ELSSLFGM 298 (371)
Q Consensus 237 ~i~iwd~~~~~-~~~--~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~--------~----~~~~~~~~ 298 (371)
.|.+||.+..+ ++. -+.........+.|+ +.+|++.+..+-+-+||.+.+... + ....+...
T Consensus 172 ~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~ 251 (609)
T KOG4227|consen 172 LVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSL 251 (609)
T ss_pred eEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhee
Confidence 99999998754 222 122234466788888 679999999999999998876631 0 11112233
Q ss_pred EecCCCCEEEEecCCCeEEEEEcCCcc-eeeeecC-------CceEEEEEeCCCCeEEeeCCCCcEEEEEccc
Q 041206 299 LDAEAKPVLFSSGKDSAIRLYELPSFK-LRARIFS-------RREVEVDQIGPAGLFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 299 ~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~-------~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~~ 363 (371)
+.+.+. .|.+--....-.+||+-+.+ .+.++.| ...+.+++|..|-.+++|+.+-.|++|.+..
T Consensus 252 ~~~~G~-Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 252 WSPSGN-QFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPR 323 (609)
T ss_pred eCCCCC-eehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCC
Confidence 444444 55555444455667877744 3333333 2356677887666899999999999999864
No 191
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.6e-14 Score=129.77 Aligned_cols=288 Identities=17% Similarity=0.194 Sum_probs=205.2
Q ss_pred CccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCC---CEEEEEeCCCcEEEEECCCCceEEEEeCCCeeE
Q 041206 65 DKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGS---NKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIG 141 (371)
Q Consensus 65 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 141 (371)
-...++.+++ ..+++++..|.+|..+++.+.+.|.. .++++++.||.|++||...+..++++....++.
T Consensus 34 ~~~~~V~VyS--------~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~ 105 (792)
T KOG1963|consen 34 CTGNFVKVYS--------TATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVH 105 (792)
T ss_pred eeCCEEEEEe--------cchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCcee
Confidence 3445788888 56778899999999999999998843 478899999999999999999999998776655
Q ss_pred EEee-----c-CCEEEEecC-------------CcEEEEEeCCC------------CeeEEEEeCC-EEEEEeCCCeEEE
Q 041206 142 CLIS-----E-GSWVFLGLP-------------NAVKSWRVNAA------------SVNALVVNND-LLFAGSEGGVISV 189 (371)
Q Consensus 142 ~~~~-----~-~~~~~~~~~-------------~~i~~~~~~~~------------~v~~~~~~~~-~l~~~~~dg~v~i 189 (371)
.+.. + ...++.+.+ .+++-+.+.+. .-.++..++. .+.....+..+.+
T Consensus 106 ~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~ 185 (792)
T KOG1963|consen 106 ALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHI 185 (792)
T ss_pred EEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEE
Confidence 4432 1 111111111 12222222211 2355666666 5566666778889
Q ss_pred EeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCC--c--eEEEEeecCCCcEEEEE
Q 041206 190 WKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDN--L--ECVQTLKGHSDTVTSLL 263 (371)
Q Consensus 190 wd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~--~--~~~~~~~~~~~~v~~~~ 263 (371)
|..............-..|. .+++.+++|.++ ++++ ..||.|.+|.--. . .....+.-|..+|.+++
T Consensus 186 ~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~-------d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~ 258 (792)
T KOG1963|consen 186 YFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAG-------DSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLS 258 (792)
T ss_pred EEecccceeeccchhhhhhcccceeEEeccccceEEEe-------ccCCcEEEEeccccccccccceEEEecccccceeE
Confidence 98887531111112223455 789999999987 8888 9999999996433 1 23466788999999999
Q ss_pred Ec--CCeEEEEeCCCcEEEEEccCCCCc---ceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecC------
Q 041206 264 FW--DEYLFSSSLDETIKIWLYTHTKNN---AELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFS------ 332 (371)
Q Consensus 264 ~~--~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------ 332 (371)
|+ +.+|++|+..+.+.+|.+.+++.. ..-..+..+..++++.+.+....|+.|.+....+.+....+.+
T Consensus 259 fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~ 338 (792)
T KOG1963|consen 259 FSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTP 338 (792)
T ss_pred EecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCc
Confidence 99 889999999999999999887742 2223445555556666888888899999999877665554443
Q ss_pred ------CceEEEEEeCCCC-eEEeeCCCCcEEEEEcccccee
Q 041206 333 ------RREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 333 ------~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~ 367 (371)
.+-.+.++++|.- .++-.+..|.|.+||+.+....
T Consensus 339 ~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i 380 (792)
T KOG1963|consen 339 STKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI 380 (792)
T ss_pred cccccccccceeEEEcCCCCceeecCCCceEEEEecccccee
Confidence 2345778899955 8888889999999999876543
No 192
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.72 E-value=2.6e-16 Score=123.62 Aligned_cols=229 Identities=16% Similarity=0.218 Sum_probs=156.7
Q ss_pred eEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeee-CccCCeEEEEEcCCCCEEE
Q 041206 34 AEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLN-GHKKAVTNVGLPSGSNKLY 112 (371)
Q Consensus 34 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~~~~~~~l~ 112 (371)
+...+++|...|+++.|....++.+ |...++++.|.. ++...+..++ .|...|+.+.--|+ ..|.
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~rL~s-----g~~~G~V~~w~l--------qt~r~~~~~r~~g~~~it~lq~~p~-d~l~ 71 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANERLMS-----GLSVGIVKMWVL--------QTERDLPLIRLFGRLFITNLQSIPN-DSLD 71 (323)
T ss_pred CeeEeccccchheehhhccchhhhc-----ccccceEEEEEe--------ecCccchhhhhhccceeeceeecCC-cchh
Confidence 4566789999999999998777665 778889999993 4445566677 57789999999887 5788
Q ss_pred EEeCCCcEEEEECCCCceEEEEe--------------CCC-e--------------------------------------
Q 041206 113 SGSRDGRVSVWDRDSGRCVNVIT--------------NGA-E-------------------------------------- 139 (371)
Q Consensus 113 s~~~dg~v~iwd~~~~~~~~~~~--------------~~~-~-------------------------------------- 139 (371)
+-+.|+.+.+|++.-+..+..-. ... .
T Consensus 72 tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klg 151 (323)
T KOG0322|consen 72 TQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLG 151 (323)
T ss_pred hcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccC
Confidence 88999999999987643222111 000 0
Q ss_pred -eEEEee---cCC--EEEEe-cCCcEEEEEeCCC---------------------CeeEEEEeCC--EEEEEeCCCeEEE
Q 041206 140 -IGCLIS---EGS--WVFLG-LPNAVKSWRVNAA---------------------SVNALVVNND--LLFAGSEGGVISV 189 (371)
Q Consensus 140 -~~~~~~---~~~--~~~~~-~~~~i~~~~~~~~---------------------~v~~~~~~~~--~l~~~~~dg~v~i 189 (371)
+.|... .++ ++++| .++.+.+||+.++ +|.++.+.+. .=++|+.+..+..
T Consensus 152 svmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~ 231 (323)
T KOG0322|consen 152 SVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVM 231 (323)
T ss_pred ceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccccee
Confidence 000000 011 11222 2455556665543 4444444433 3344445555555
Q ss_pred EeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc-C
Q 041206 190 WKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW-D 266 (371)
Q Consensus 190 wd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~ 266 (371)
|++.......+.-..+...+ .+..+.+-||++ ++++ +.|+.|+||..++.+++..++-|.+.|++++|+ +
T Consensus 232 ~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATA-------GWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd 304 (323)
T KOG0322|consen 232 YSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATA-------GWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPD 304 (323)
T ss_pred eeeccccCcccccceEEecCCCccceEEccCCcEEeec-------ccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCC
Confidence 55544322222222333333 788889999998 7889 999999999999999999999999999999999 3
Q ss_pred -CeEEEEeCCCcEEEEEc
Q 041206 267 -EYLFSSSLDETIKIWLY 283 (371)
Q Consensus 267 -~~l~s~~~dg~i~iwd~ 283 (371)
+.+++++.|++|.+|++
T Consensus 305 ~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 305 CELMAAASKDARISLWKL 322 (323)
T ss_pred CchhhhccCCceEEeeec
Confidence 79999999999999985
No 193
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=2.4e-15 Score=138.77 Aligned_cols=245 Identities=17% Similarity=0.229 Sum_probs=169.8
Q ss_pred CCccceEEEEEeccCCCCccCCceeeEeeeCcc---CCeEEEEEcC--CCCEEEEEeCCCcEEEEECC-CC----ceEEE
Q 041206 64 GDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHK---KAVTNVGLPS--GSNKLYSGSRDGRVSVWDRD-SG----RCVNV 133 (371)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~---~~V~~~~~~~--~~~~l~s~~~dg~v~iwd~~-~~----~~~~~ 133 (371)
.+....|.+|+ .+..+.+..|..+. ..|+.+.+-. |..+|++|+.||.||||+-- ++ +.+..
T Consensus 1082 ad~r~~i~vwd--------~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTa 1153 (1387)
T KOG1517|consen 1082 ADDRERIRVWD--------WEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTA 1153 (1387)
T ss_pred cCCcceEEEEe--------cccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEe
Confidence 34455788888 34445566665443 5788998865 56789999999999999732 22 22222
Q ss_pred EeC-------CCeeEEEe----ecCCEEEEecCCcEEEEEeCCC------------CeeEEEEeC---CEEEEEeCCCeE
Q 041206 134 ITN-------GAEIGCLI----SEGSWVFLGLPNAVKSWRVNAA------------SVNALVVNN---DLLFAGSEGGVI 187 (371)
Q Consensus 134 ~~~-------~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~------------~v~~~~~~~---~~l~~~~~dg~v 187 (371)
... .....++. ..|.++++|.-..|++||.+.. .|+++.-+. +.+++|..||.|
T Consensus 1154 w~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsv 1233 (1387)
T KOG1517|consen 1154 WSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSV 1233 (1387)
T ss_pred eccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCce
Confidence 221 01111221 2355666677789999999977 344444432 389999999999
Q ss_pred EEEeccCCCCcceeeEEEecCc-c--eEEEEecCCc--eeEecccceeeeeCCCeEEEEECCCceEE--EEeecCC--C-
Q 041206 188 SVWKGTFVANPFKQVASIRAPL-W--FCSLSSSNDT--RWNSKEEAAVFEFCGHTTRTWNLDNLECV--QTLKGHS--D- 257 (371)
Q Consensus 188 ~iwd~~~~~~~~~~~~~~~~~~-~--v~~~~~~~~~--~l~~~~~~~~~~~~dg~i~iwd~~~~~~~--~~~~~~~--~- 257 (371)
++||.+..... ..+...+.|+ . |..+.+.+.| .+++| +.+|.|++||++..... .++..|. +
T Consensus 1234 RvyD~R~a~~d-s~v~~~R~h~~~~~Iv~~slq~~G~~elvSg-------s~~G~I~~~DlR~~~~e~~~~iv~~~~yGs 1305 (1387)
T KOG1517|consen 1234 RVYDRRMAPPD-SLVCVYREHNDVEPIVHLSLQRQGLGELVSG-------SQDGDIQLLDLRMSSKETFLTIVAHWEYGS 1305 (1387)
T ss_pred EEeecccCCcc-ccceeecccCCcccceeEEeecCCCcceeee-------ccCCeEEEEecccCcccccceeeeccccCc
Confidence 99999876432 4677788888 4 9999999877 49999 99999999999974222 2222333 3
Q ss_pred cEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC----------cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcc
Q 041206 258 TVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN----------NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFK 325 (371)
Q Consensus 258 ~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 325 (371)
..+++..+ ...+++|+. +.|+||++...+. ...+....++.+++..-++++|+.|.+|.||.....+
T Consensus 1306 ~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1306 ALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 58888888 568888888 9999999654331 2223445666777777789999999999999876543
No 194
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=4.7e-15 Score=120.68 Aligned_cols=190 Identities=16% Similarity=0.242 Sum_probs=139.5
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEE----eCCEEEEEeCC
Q 041206 109 NKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVV----NNDLLFAGSEG 184 (371)
Q Consensus 109 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~----~~~~l~~~~~d 184 (371)
..+|++-..|+|++||..+++.+..++...+ .++.+.| +|+.+.+++.|
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~---------------------------~~N~vrf~~~ds~h~v~s~ssD 93 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPA---------------------------TTNGVRFISCDSPHGVISCSSD 93 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCC---------------------------cccceEEecCCCCCeeEEeccC
Confidence 5788888899999999999999988886443 2444444 34599999999
Q ss_pred CeEEEEeccCCCCcceeeEEEecCc--ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceE-EEEe-ecCCCcE
Q 041206 185 GVISVWKGTFVANPFKQVASIRAPL--WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLEC-VQTL-KGHSDTV 259 (371)
Q Consensus 185 g~v~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~-~~~~-~~~~~~v 259 (371)
|+|++||++.... .....+..++ +..|++..-.++ +++|.... ..+-.+.+||++..+. +..+ ..|.+.|
T Consensus 94 G~Vr~wD~Rs~~e--~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~---~s~A~v~lwDvR~~qq~l~~~~eSH~DDV 168 (376)
T KOG1188|consen 94 GTVRLWDIRSQAE--SARISWTQQSGTPFICLDLNCKKNIIACGTELT---RSDASVVLWDVRSEQQLLRQLNESHNDDV 168 (376)
T ss_pred CeEEEEEeecchh--hhheeccCCCCCcceEeeccCcCCeEEeccccc---cCceEEEEEEeccccchhhhhhhhccCcc
Confidence 9999999998754 3334444554 778888875554 55551111 4577899999998765 4443 5799999
Q ss_pred EEEEEc---CCeEEEEeCCCcEEEEEccCCCCccee-------cceEEE-EecCCCCEEEEecCCCeEEEEEcCCcceee
Q 041206 260 TSLLFW---DEYLFSSSLDETIKIWLYTHTKNNAEL-------SSLFGM-LDAEAKPVLFSSGKDSAIRLYELPSFKLRA 328 (371)
Q Consensus 260 ~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~-~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 328 (371)
+++.|+ +++|++||.||-+.+||++...+...+ +++..+ +..+....|.+-+...+..+|+++.+.+..
T Consensus 169 T~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~ 248 (376)
T KOG1188|consen 169 TQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET 248 (376)
T ss_pred eeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh
Confidence 999998 789999999999999998877643222 223333 444444468888889999999999887544
Q ss_pred ee
Q 041206 329 RI 330 (371)
Q Consensus 329 ~~ 330 (371)
.+
T Consensus 249 ~~ 250 (376)
T KOG1188|consen 249 WL 250 (376)
T ss_pred cc
Confidence 43
No 195
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.69 E-value=1.2e-14 Score=131.12 Aligned_cols=239 Identities=18% Similarity=0.201 Sum_probs=170.3
Q ss_pred CCcEEEEECCCC-ceEEEEeCCCeeEEEee---cCCEEEEe-cCCcEEEEEeCCC-----------------CeeEEEEe
Q 041206 117 DGRVSVWDRDSG-RCVNVITNGAEIGCLIS---EGSWVFLG-LPNAVKSWRVNAA-----------------SVNALVVN 174 (371)
Q Consensus 117 dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~i~~~~~~~~-----------------~v~~~~~~ 174 (371)
++.+.+|++... .....+....++.|+.+ +..++++| .+|.|.+||+... +++.+.|.
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 347999999876 67777888888888765 56777776 4899999999665 77888886
Q ss_pred CC----EEEEEeCCCeEEEEeccCCCCcce--eeEEEe-----cCc--ceEEEEecCCc--eeEecccceeeeeCCCeEE
Q 041206 175 ND----LLFAGSEGGVISVWKGTFVANPFK--QVASIR-----APL--WFCSLSSSNDT--RWNSKEEAAVFEFCGHTTR 239 (371)
Q Consensus 175 ~~----~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~-----~~~--~v~~~~~~~~~--~l~~~~~~~~~~~~dg~i~ 239 (371)
.+ .+++++.||.|..|+++....+.+ +..... ... .+++++|.+.. .++.| +.+|.|.
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVG-------Te~G~v~ 373 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVG-------TEEGKVY 373 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEE-------cCCcEEE
Confidence 65 599999999999998876543211 111111 122 78999999855 48999 9999998
Q ss_pred EEECCCc--------eEEEEeecCCCcEEEEEEc---CCeEEEEeCCCcEEEEEcc-CCCC----cceecceEEEEe-cC
Q 041206 240 TWNLDNL--------ECVQTLKGHSDTVTSLLFW---DEYLFSSSLDETIKIWLYT-HTKN----NAELSSLFGMLD-AE 302 (371)
Q Consensus 240 iwd~~~~--------~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~-~~~~----~~~~~~~~~~~~-~~ 302 (371)
--+-... +.+..+..|.++|+++.++ ...+++++ |.+++||... ...+ ......+..+.+ +.
T Consensus 374 ~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSpt 452 (555)
T KOG1587|consen 374 KGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPT 452 (555)
T ss_pred EEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCc
Confidence 7333221 2234566788999999998 45666666 9999999966 3222 111122444444 44
Q ss_pred CCCEEEEecCCCeEEEEEcCCcc--eeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccc
Q 041206 303 AKPVLFSSGKDSAIRLYELPSFK--LRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 303 ~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~ 363 (371)
....|+++..||.+.+||+.... ++.... .....+.+.|+++| .|++|...|.+++|++..
T Consensus 453 rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 453 RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 45578888899999999997643 333332 35566788889989 999999999999999964
No 196
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=7.7e-14 Score=112.71 Aligned_cols=230 Identities=11% Similarity=0.116 Sum_probs=162.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC-
Q 041206 98 AVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND- 176 (371)
Q Consensus 98 ~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~- 176 (371)
...+++|+.|...++.|..+| .+||+.+.-+.......... .-.+..+-|..+
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~-------------------------G~~~veMLfR~N~ 60 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDG-------------------------GFKIVEMLFRSNY 60 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccC-------------------------chhhhhHhhhhce
Confidence 344599999999999999888 99999886432211111000 002334444445
Q ss_pred EEEEEeCC------CeEEEEeccCCCCcceeeEEEecCcceEEEEecCCceeEecccceeeeeCCCeEEEEECC-CceEE
Q 041206 177 LLFAGSEG------GVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLD-NLECV 249 (371)
Q Consensus 177 ~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~-~~~~~ 249 (371)
+.++|+.+ +.|.|||-... +++.++.-..+|.++.+.++..+++ ..+.|+||... +.+.+
T Consensus 61 laLVGGg~~pky~pNkviIWDD~k~----~~i~el~f~~~I~~V~l~r~riVvv---------l~~~I~VytF~~n~k~l 127 (346)
T KOG2111|consen 61 LALVGGGSRPKYPPNKVIIWDDLKE----RCIIELSFNSEIKAVKLRRDRIVVV---------LENKIYVYTFPDNPKLL 127 (346)
T ss_pred EEEecCCCCCCCCCceEEEEecccC----cEEEEEEeccceeeEEEcCCeEEEE---------ecCeEEEEEcCCChhhe
Confidence 33444433 57999995554 6777777767999999999644333 47899999987 45555
Q ss_pred EEeecCC--CcEEEEEEc-CC-eEEE-EeCCCcEEEEEccCCCC------cceecceEEEEecCCCCEEEEecCCCe-EE
Q 041206 250 QTLKGHS--DTVTSLLFW-DE-YLFS-SSLDETIKIWLYTHTKN------NAELSSLFGMLDAEAKPVLFSSGKDSA-IR 317 (371)
Q Consensus 250 ~~~~~~~--~~v~~~~~~-~~-~l~s-~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~ 317 (371)
+.+.... ..+.+++-. +. +|+. |-.-|.|+|-|+...+. ..+.+.+.++.....+.++|++|..|+ ||
T Consensus 128 ~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIR 207 (346)
T KOG2111|consen 128 HVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIR 207 (346)
T ss_pred eeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEE
Confidence 5554322 234444433 33 3433 44678999999877665 334466777777777889999999997 89
Q ss_pred EEEcCCcceeeeecC---CceEEEEEeCCCC-eEEeeCCCCcEEEEEccccce
Q 041206 318 LYELPSFKLRARIFS---RREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 318 iwd~~~~~~~~~~~~---~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~ 366 (371)
|||..+++++.++.. ...|.+++|||+. +|++.|.-|+|+||.+.....
T Consensus 208 IFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 208 IFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred EEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCC
Confidence 999999999999873 6789999999999 999999999999999987543
No 197
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=3e-14 Score=119.18 Aligned_cols=183 Identities=15% Similarity=0.152 Sum_probs=140.3
Q ss_pred eEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECC
Q 041206 169 NALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLD 244 (371)
Q Consensus 169 ~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~ 244 (371)
..++++++ .+++++.||.+|+|+.... ..+.....|. .|.++.|+||++ |++- +.| ..+||+.+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~----~t~l~e~~~~~eV~DL~FS~dgk~lasi-------g~d-~~~VW~~~ 215 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM----LTILEEIAHHAEVKDLDFSPDGKFLASI-------GAD-SARVWSVN 215 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc----hhhhhhHhhcCccccceeCCCCcEEEEe-------cCC-ceEEEEec
Confidence 56777766 9999999999999997776 5555666666 999999999997 7777 777 99999999
Q ss_pred CceEEEEeec--CCCcEEEEEEc-CC-----eEEEE-eCCCcEEEEEccCCCC---------cceecceEEEEecCCCCE
Q 041206 245 NLECVQTLKG--HSDTVTSLLFW-DE-----YLFSS-SLDETIKIWLYTHTKN---------NAELSSLFGMLDAEAKPV 306 (371)
Q Consensus 245 ~~~~~~~~~~--~~~~v~~~~~~-~~-----~l~s~-~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~ 306 (371)
++.++..... -......+.|. .+ ++++. ..-+.|+.||+..... ......+.++..++++++
T Consensus 216 ~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf 295 (398)
T KOG0771|consen 216 TGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF 295 (398)
T ss_pred cCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE
Confidence 9977766542 22345566666 22 33332 2345677766443322 223346677777888889
Q ss_pred EEEecCCCeEEEEEcCCcceeeeec--CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccc
Q 041206 307 LFSSGKDSAIRLYELPSFKLRARIF--SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 307 l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~ 363 (371)
++.|+.||.|.|++..+.+.+..++ |...|+.+.|+||. .+++.+.|....+..+.-
T Consensus 296 ~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 296 LALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999999999999998888777 67799999999999 999999999999988764
No 198
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.68 E-value=2.6e-16 Score=132.84 Aligned_cols=224 Identities=10% Similarity=0.138 Sum_probs=185.7
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeC
Q 041206 96 KKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNN 175 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~ 175 (371)
.-.-+.+.++.+|++|+.|+.-|.|..+|+.++++...+..... |.++.|-.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Et----------------------------v~Dv~~LH 180 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMET----------------------------VRDVTFLH 180 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhh----------------------------hhhhhhhc
Confidence 34567899999999999999999999999999999888875443 77788866
Q ss_pred C-EEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEee
Q 041206 176 D-LLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLK 253 (371)
Q Consensus 176 ~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~ 253 (371)
+ .+++......++|||-.. ..+..++.+..|..+.|-|-.. |+++ +..|.++.-|+.+|+.+..+.
T Consensus 181 neq~~AVAQK~y~yvYD~~G-----tElHClk~~~~v~rLeFLPyHfLL~~~-------~~~G~L~Y~DVS~GklVa~~~ 248 (545)
T KOG1272|consen 181 NEQFFAVAQKKYVYVYDNNG-----TELHCLKRHIRVARLEFLPYHFLLVAA-------SEAGFLKYQDVSTGKLVASIR 248 (545)
T ss_pred chHHHHhhhhceEEEecCCC-----cEEeehhhcCchhhhcccchhheeeec-------ccCCceEEEeechhhhhHHHH
Confidence 6 445555678899999665 5677888888999999999775 7788 999999999999999999998
Q ss_pred cCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC----cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCccee
Q 041206 254 GHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN----NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLR 327 (371)
Q Consensus 254 ~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 327 (371)
...+.+..++-+ +..+-+|...|+|.+|.....++ ..+.+.+.++...++++++++.+.|..++|||++....+
T Consensus 249 t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql 328 (545)
T KOG1272|consen 249 TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL 328 (545)
T ss_pred ccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccc
Confidence 888888888887 46788899999999999877764 223345666677888889999999999999999999988
Q ss_pred eeecCCceEEEEEeCCCCeEEeeCCCCcEEEEE
Q 041206 328 ARIFSRREVEVDQIGPAGLFFPGDASGSVGVWK 360 (371)
Q Consensus 328 ~~~~~~~~v~~~~~s~~~~l~~~~~dg~i~iw~ 360 (371)
..+....+...+++|..|.||.+-. ..|.||.
T Consensus 329 ~t~~tp~~a~~ls~SqkglLA~~~G-~~v~iw~ 360 (545)
T KOG1272|consen 329 HTYRTPHPASNLSLSQKGLLALSYG-DHVQIWK 360 (545)
T ss_pred ceeecCCCccccccccccceeeecC-Ceeeeeh
Confidence 7777777889999999886666644 4889995
No 199
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.67 E-value=7.4e-15 Score=126.31 Aligned_cols=241 Identities=14% Similarity=0.047 Sum_probs=165.4
Q ss_pred CccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC-e-eEEEe----------ecCCEEEEecCCcEEEE
Q 041206 94 GHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGA-E-IGCLI----------SEGSWVFLGLPNAVKSW 161 (371)
Q Consensus 94 ~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~-~~~~~----------~~~~~~~~~~~~~i~~~ 161 (371)
.|...|.|+.|+.+...+.+++.+..++-||+.+... ..+..+. . ...+. ..+.++++++|+.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh-hhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 4677788999998887777777665555555543322 1111110 0 00110 12456677788877766
Q ss_pred E----------eCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce--eEecc
Q 041206 162 R----------VNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR--WNSKE 226 (371)
Q Consensus 162 ~----------~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~--l~~~~ 226 (371)
+ .|.+.+.+-.|+|+ -|++++.||.|++|.-... ...++.... +|.|++|.|+.. +++
T Consensus 91 ~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM-----LRStl~Q~~~~v~c~~W~p~S~~vl~c-- 163 (737)
T KOG1524|consen 91 NKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM-----LRSTVVQNEESIRCARWAPNSNSIVFC-- 163 (737)
T ss_pred cccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch-----HHHHHhhcCceeEEEEECCCCCceEEe--
Confidence 4 45668899999999 8999999999999986543 233344444 999999999875 443
Q ss_pred cceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCC---CcceecceEEEEec
Q 041206 227 EAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTK---NNAELSSLFGMLDA 301 (371)
Q Consensus 227 ~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~ 301 (371)
..+.+.|=-+.-...+-.++.|.+-|.++.|+ .+.+++|++|-..++||-.... ...+-..++.+.+.
T Consensus 164 -------~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~n 236 (737)
T KOG1524|consen 164 -------QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFN 236 (737)
T ss_pred -------cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeec
Confidence 35667777777666777889999999999999 7899999999999999933211 12222345555666
Q ss_pred CCCCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEc
Q 041206 302 EAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKW 361 (371)
Q Consensus 302 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~ 361 (371)
++. .++.++. ++.| .+-...+.|..++||||| .++.|...|.+.+=.+
T Consensus 237 pd~-~~~v~S~-nt~R----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 237 PEK-DYLLWSY-NTAR----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred ccc-ceeeeee-eeee----------ecCCCccceEEEEEcCCCceeeccccCceEEEeee
Confidence 664 6666654 3444 122246789999999999 9999999998765443
No 200
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2e-14 Score=124.62 Aligned_cols=263 Identities=13% Similarity=0.080 Sum_probs=186.8
Q ss_pred eeeEeeeCccCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEEEeCCCeeEEEee---c-CCEEEEecCCcEEEE
Q 041206 87 ATLMKLNGHKKAVTNVGLPSGSNKL-YSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLIS---E-GSWVFLGLPNAVKSW 161 (371)
Q Consensus 87 ~~~~~l~~h~~~V~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~i~~~ 161 (371)
++++.| +|...-+.|..+|||+|+ |||..--.|++||+.+......-.....+..+.+ + .+.++...|..|.+.
T Consensus 43 eLiQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefH 121 (703)
T KOG2321|consen 43 ELIQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFH 121 (703)
T ss_pred HHHHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeeh
Confidence 344444 378888999999999985 5666788999999987665444444444333322 1 344555666666553
Q ss_pred EeCCC--------CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccce
Q 041206 162 RVNAA--------SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAA 229 (371)
Q Consensus 162 ~~~~~--------~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~ 229 (371)
..... .-.+++++.- -|+.++....|+-++++.+ ..+..+.... .++++..++... +++|
T Consensus 122 ak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqG----rfL~P~~~~~~~lN~v~in~~hgLla~G---- 193 (703)
T KOG2321|consen 122 AKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG----RFLNPFETDSGELNVVSINEEHGLLACG---- 193 (703)
T ss_pred hhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccc----ccccccccccccceeeeecCccceEEec----
Confidence 32211 2344555433 5666666778999999999 8888888887 999999999654 7888
Q ss_pred eeeeCCCeEEEEECCCceEEEEee------cCCC-----cEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCccee----
Q 041206 230 VFEFCGHTTRTWNLDNLECVQTLK------GHSD-----TVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAEL---- 292 (371)
Q Consensus 230 ~~~~~dg~i~iwd~~~~~~~~~~~------~~~~-----~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~---- 292 (371)
+.+|.|..||.++...+.++. .|.+ .|+++.|+ |-.+++|..+|.+.|||++..++...-
T Consensus 194 ---t~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~ 270 (703)
T KOG2321|consen 194 ---TEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGY 270 (703)
T ss_pred ---ccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCC
Confidence 889999999999877665554 2333 49999998 458899999999999999987752111
Q ss_pred -cceEEEEec-C-CCCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEcc
Q 041206 293 -SSLFGMLDA-E-AKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 293 -~~~~~~~~~-~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~ 362 (371)
..+..+.+. . ++..+++. ....++|||-.+++....+.....++.+++-|++ +++++-.++.+..|=+.
T Consensus 271 e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 271 ELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred ccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 122222222 2 23345544 4578999999999999988888889999999998 99999888888766543
No 201
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.66 E-value=8.3e-14 Score=113.08 Aligned_cols=314 Identities=13% Similarity=0.122 Sum_probs=200.7
Q ss_pred cccCCCCceeeccCcccccceeEEEEEee-----ccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCce
Q 041206 13 HKHSEGGETMMSDDDDLMKGRAEEREEMF-----GFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLA 87 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (371)
-+|||+|+++|+..+-..--|-...++-| -+.|.-+.+.....++. |. ...+..+.+|++ ...+
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~il--C~-~yk~~~vqvwsl--------~Qpe 82 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHIL--CV-AYKDPKVQVWSL--------VQPE 82 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeee--ee-eeccceEEEEEe--------ecce
Confidence 46999999999988652111111122222 23444444554444332 22 346678999993 4456
Q ss_pred eeEeeeCccCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceEEEEeCC--CeeEEEeecCCEEEEecCC--------
Q 041206 88 TLMKLNGHKKAVTNVGLPSGSN-KLYSGSRDGRVSVWDRDSGRCVNVITNG--AEIGCLISEGSWVFLGLPN-------- 156 (371)
Q Consensus 88 ~~~~l~~h~~~V~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-------- 156 (371)
-...++....++.+++|||||+ +|.+...|-.|.+|.+.+.+....-... .....+.+++++.+.....
T Consensus 83 w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i 162 (447)
T KOG4497|consen 83 WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQI 162 (447)
T ss_pred eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHH
Confidence 6778888889999999999995 5566778999999999887765543332 3334445567776654322
Q ss_pred -------cEEEEEeCCCCeeEEEEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eEecccc
Q 041206 157 -------AVKSWRVNAASVNALVVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEA 228 (371)
Q Consensus 157 -------~i~~~~~~~~~v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~ 228 (371)
.++-+++.+...+.+.|+|+ +..+.+||---. -.+..+.....+..++|+|.++ ++.|
T Consensus 163 ~~c~~W~ll~~f~~dT~DltgieWsPd-------g~~laVwd~~Le----ykv~aYe~~lG~k~v~wsP~~qflavG--- 228 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDTIDLTGIEWSPD-------GNWLAVWDNVLE----YKVYAYERGLGLKFVEWSPCNQFLAVG--- 228 (447)
T ss_pred HhhHHHHHHHhcCCCcccccCceECCC-------CcEEEEecchhh----heeeeeeeccceeEEEeccccceEEee---
Confidence 23456677778899999997 334556664322 1222222222788999999887 7888
Q ss_pred eeeeeCCCeEEEEECCCce------------------------------------------------------------E
Q 041206 229 AVFEFCGHTTRTWNLDNLE------------------------------------------------------------C 248 (371)
Q Consensus 229 ~~~~~~dg~i~iwd~~~~~------------------------------------------------------------~ 248 (371)
+.|+.+++.+--+.+ .
T Consensus 229 ----syD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~ 304 (447)
T KOG4497|consen 229 ----SYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVK 304 (447)
T ss_pred ----ccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhccee
Confidence 999988874422110 0
Q ss_pred EEEee------cCCCcEEEEEEc-CC-eEEEEeC--CCcEEEEEccCCCCcce---ecceEEEEecCCCCEEEEecCCCe
Q 041206 249 VQTLK------GHSDTVTSLLFW-DE-YLFSSSL--DETIKIWLYTHTKNNAE---LSSLFGMLDAEAKPVLFSSGKDSA 315 (371)
Q Consensus 249 ~~~~~------~~~~~v~~~~~~-~~-~l~s~~~--dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~ 315 (371)
++.++ .....+.-++|+ +. +++|-.. -..+-+||++..+.... ...+....+.++...|+.+.....
T Consensus 305 ~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~sr 384 (447)
T KOG4497|consen 305 VHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSR 384 (447)
T ss_pred eecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCce
Confidence 11111 112245567888 33 4444322 24689999888764322 234555567777767777777778
Q ss_pred EEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCCCCc
Q 041206 316 IRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDASGS 355 (371)
Q Consensus 316 i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~ 355 (371)
+++|.+.....+......-.|..+.|..+| .++..+.|..
T Consensus 385 LY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 385 LYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 999999887777666666789999999999 8888888863
No 202
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.66 E-value=8.3e-13 Score=115.86 Aligned_cols=286 Identities=14% Similarity=0.155 Sum_probs=176.0
Q ss_pred CccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEe
Q 041206 65 DKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLI 144 (371)
Q Consensus 65 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 144 (371)
...+.+.+.+ ..+.+.+.++......-..+.|+||++++++++.||.|.++|+.+++.+.+++.+.....+.
T Consensus 13 ~~~~~v~viD--------~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~ 84 (369)
T PF02239_consen 13 RGSGSVAVID--------GATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIA 84 (369)
T ss_dssp GGGTEEEEEE--------TTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEE
T ss_pred cCCCEEEEEE--------CCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEE
Confidence 4556677777 45678888998765554567899999999999999999999999999999999876655554
Q ss_pred --ecCCEEEEec--CCcEEEEEeCCCC------------------eeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcc
Q 041206 145 --SEGSWVFLGL--PNAVKSWRVNAAS------------------VNALVVNND---LLFAGSEGGVISVWKGTFVANPF 199 (371)
Q Consensus 145 --~~~~~~~~~~--~~~i~~~~~~~~~------------------v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~ 199 (371)
+++++++++. .+.+.++|..+.+ +.++..++. +++.--..+.|.+.|......
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~-- 162 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN-- 162 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC--
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc--
Confidence 5899998864 7999999987762 334444444 444444458888888777621
Q ss_pred eeeEEEecCcceEEEEecCCce--eEecccceeeeeCCCeEEEEECCCceEEEEee----cCCCcEEEEE-------Ec-
Q 041206 200 KQVASIRAPLWFCSLSSSNDTR--WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLK----GHSDTVTSLL-------FW- 265 (371)
Q Consensus 200 ~~~~~~~~~~~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~-------~~- 265 (371)
.....+..........|+|+++ +++. ..++.|-++|.++++.+..+. .|..++..+- |.
T Consensus 163 ~~~~~i~~g~~~~D~~~dpdgry~~va~-------~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~ 235 (369)
T PF02239_consen 163 LKVTTIKVGRFPHDGGFDPDGRYFLVAA-------NGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWAT 235 (369)
T ss_dssp EEEEEEE--TTEEEEEE-TTSSEEEEEE-------GGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEE
T ss_pred cceeeecccccccccccCcccceeeecc-------cccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEee
Confidence 2223333333677899999996 3444 667799999999988876654 2333333321 11
Q ss_pred ---CCeEEEEeCCCcEEEEEccCCCCccee----cceEEEEecCCCCEEEEe----cCCCeEEEEEcCCcceeeeecC--
Q 041206 266 ---DEYLFSSSLDETIKIWLYTHTKNNAEL----SSLFGMLDAEAKPVLFSS----GKDSAIRLYELPSFKLRARIFS-- 332 (371)
Q Consensus 266 ---~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~~-- 332 (371)
+...++.-....+.+||...-+....+ .. ..+..+++++++++. ...+.|.++|.++.+.+..+..
T Consensus 236 ~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~ 314 (369)
T PF02239_consen 236 SGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP 314 (369)
T ss_dssp EBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH
T ss_pred ccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC
Confidence 222222222234445554443321111 12 223445555688777 5568999999999987777663
Q ss_pred CceEEEEEeCCCC--eEEeeC-CCCcEEEEEccccceec
Q 041206 333 RREVEVDQIGPAG--LFFPGD-ASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 333 ~~~v~~~~~s~~~--~l~~~~-~dg~i~iw~~~~~~~~~ 368 (371)
...+..+.|+++| ..++.- .++.|.|||..+.+..+
T Consensus 315 ~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 315 GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence 3459999999999 334443 44489999998876654
No 203
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=3.6e-13 Score=110.97 Aligned_cols=254 Identities=14% Similarity=0.098 Sum_probs=174.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCC--CcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCC--------
Q 041206 97 KAVTNVGLPSGSNKLYSGSRD--GRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAA-------- 166 (371)
Q Consensus 97 ~~V~~~~~~~~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------- 166 (371)
-.|.-+-|+. .++|..+.+ +.+++.+...+..+..+..+.++.++-.+.+.+++.-...|.+||+.+.
T Consensus 47 ~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t 124 (391)
T KOG2110|consen 47 VSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIET 124 (391)
T ss_pred eEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhc
Confidence 3466666763 466555543 4599999999999999999999999999988888888878999999765
Q ss_pred ------CeeEEEEeCC--EEEEEe--CCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeC
Q 041206 167 ------SVNALVVNND--LLFAGS--EGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFC 234 (371)
Q Consensus 167 ------~v~~~~~~~~--~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~ 234 (371)
.+.++++++. +++.-+ ..|.|.+||..+. ++...+..|. .+-+++|+++|. ++++ +.
T Consensus 125 ~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl----~~v~~I~aH~~~lAalafs~~G~llATA-------Se 193 (391)
T KOG2110|consen 125 TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL----QPVNTINAHKGPLAALAFSPDGTLLATA-------SE 193 (391)
T ss_pred cCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc----eeeeEEEecCCceeEEEECCCCCEEEEe-------cc
Confidence 3556666655 555433 3689999999998 8999999999 999999999997 8888 88
Q ss_pred CCe-EEEEECCCceEEEEeecCC--CcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcceecceEEE-EecCCCCEEE
Q 041206 235 GHT-TRTWNLDNLECVQTLKGHS--DTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAELSSLFGM-LDAEAKPVLF 308 (371)
Q Consensus 235 dg~-i~iwd~~~~~~~~~~~~~~--~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~l~ 308 (371)
.|+ |||+.+.+|+.+++|+.-. ..|.+++|+ ..+|++.|..++|.+|.+........-..-... +...-. .-+
T Consensus 194 KGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~s-k~~ 272 (391)
T KOG2110|consen 194 KGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVS-KAA 272 (391)
T ss_pred CceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhh-hhh
Confidence 886 6999999999999997433 368899999 678999999999999998765532221000000 000000 000
Q ss_pred EecC-CCeEEEEEcCCcceeeeecCCceEEEEEeC--CCC-eEEeeCCCCcEEEEEcccc
Q 041206 309 SSGK-DSAIRLYELPSFKLRARIFSRREVEVDQIG--PAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 309 ~~~~-d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s--~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
++-. .+.-.+||....--..++...+.-..+.+. +.. .+..++.||.++.|.+..+
T Consensus 273 ~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 273 TSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred hhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 1100 112223444332222222223322333444 345 8888899999999998653
No 204
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.66 E-value=8.3e-14 Score=115.96 Aligned_cols=162 Identities=15% Similarity=0.221 Sum_probs=112.4
Q ss_pred ccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCc-cCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcE
Q 041206 42 GFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNT-TNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRV 120 (371)
Q Consensus 42 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v 120 (371)
...+..+.++.... +...+++.|..|++|.+...-... ....+.+..|..|...|+++.|+|+|+.||||+.+|.|
T Consensus 13 ~~pv~s~dfq~n~~---~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v 89 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSL---NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEV 89 (434)
T ss_pred CCceEEEEeccCcc---cceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceE
Confidence 34555666665322 134457889999999976642222 13456788999999999999999999999999999999
Q ss_pred EEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCc
Q 041206 121 SVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANP 198 (371)
Q Consensus 121 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~ 198 (371)
.+|....-.. +.... ..-.....+++ .++...|...++.++|.++ ++++++-|+.+++||+..+
T Consensus 90 ~lWk~~~~~~---~~~d~--e~~~~ke~w~v------~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G--- 155 (434)
T KOG1009|consen 90 FLWKQGDVRI---FDADT--EADLNKEKWVV------KKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG--- 155 (434)
T ss_pred EEEEecCcCC---ccccc--hhhhCccceEE------EEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc---
Confidence 9998663110 00000 00000111111 1122225668999999998 9999999999999999998
Q ss_pred ceeeEEEecCc-ceEEEEecCCce
Q 041206 199 FKQVASIRAPL-WFCSLSSSNDTR 221 (371)
Q Consensus 199 ~~~~~~~~~~~-~v~~~~~~~~~~ 221 (371)
.....+..|. .+..++|.|-++
T Consensus 156 -~l~~~~~dh~~yvqgvawDpl~q 178 (434)
T KOG1009|consen 156 -QLLAILDDHEHYVQGVAWDPLNQ 178 (434)
T ss_pred -eeEeeccccccccceeecchhhh
Confidence 7788888888 888888888654
No 205
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=4.4e-14 Score=121.95 Aligned_cols=180 Identities=14% Similarity=0.167 Sum_probs=133.9
Q ss_pred cccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEee-eCccCCeEEEEEcC-
Q 041206 29 LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKL-NGHKKAVTNVGLPS- 106 (371)
Q Consensus 29 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~~~~~~- 106 (371)
+....+..++.||++-|.+++++..+.|+. +|+.|.-+.+|+ .-..++++.+ .||...|.++.|-|
T Consensus 37 lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~----SGSDD~r~ivWd--------~~~~KllhsI~TgHtaNIFsvKFvP~ 104 (758)
T KOG1310|consen 37 LRRLDLEAELTGHTGCVNCLEWNADGELLA----SGSDDTRLIVWD--------PFEYKLLHSISTGHTANIFSVKFVPY 104 (758)
T ss_pred HhhcchhhhhccccceecceeecCCCCEEe----ecCCcceEEeec--------chhcceeeeeecccccceeEEeeecc
Confidence 344566788999999999999999877654 478888999999 3355666655 58999999999999
Q ss_pred -CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC---EEEEEe
Q 041206 107 -GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND---LLFAGS 182 (371)
Q Consensus 107 -~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~---~l~~~~ 182 (371)
+.++++||..|..|+++|+...+.-..-. +...+++.|.-|+..|..++..|+ .+.+++
T Consensus 105 tnnriv~sgAgDk~i~lfdl~~~~~~~~d~-----------------~~~~~~~~~~cht~rVKria~~p~~Phtfwsas 167 (758)
T KOG1310|consen 105 TNNRIVLSGAGDKLIKLFDLDSSKEGGMDH-----------------GMEETTRCWSCHTDRVKRIATAPNGPHTFWSAS 167 (758)
T ss_pred CCCeEEEeccCcceEEEEeccccccccccc-----------------CccchhhhhhhhhhhhhheecCCCCCceEEEec
Confidence 56789999999999999987533211100 112345667778888888888766 899999
Q ss_pred CCCeEEEEeccCCCCcc------eeeEEEecCc-ceEEEEecCCce--eEecccceeeeeCCCeEEEEECC
Q 041206 183 EGGVISVWKGTFVANPF------KQVASIRAPL-WFCSLSSSNDTR--WNSKEEAAVFEFCGHTTRTWNLD 244 (371)
Q Consensus 183 ~dg~v~iwd~~~~~~~~------~~~~~~~~~~-~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~iwd~~ 244 (371)
.||+++-+|++...... ..+..+...- ...|+..+|... |++| +.|--.++||.+
T Consensus 168 EDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVG-------gsdpfarLYD~R 231 (758)
T KOG1310|consen 168 EDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVG-------GSDPFARLYDRR 231 (758)
T ss_pred CCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEec-------CCCchhhhhhhh
Confidence 99999999999753110 1111122222 678999999763 8899 999999999954
No 206
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.62 E-value=2.5e-13 Score=127.53 Aligned_cols=237 Identities=16% Similarity=0.192 Sum_probs=164.5
Q ss_pred cccceeEEEEEeeccceeeeeeeecc--eeeccceeeCCccceEEEEEeccC-CCCccCCceeeEeeeCccCCeEEEEEc
Q 041206 29 LMKGRAEEREEMFGFGLAAMAIRVCN--NWISDSCVYGDKCRFLHSWVHSVD-GDNTTNSLATLMKLNGHKKAVTNVGLP 105 (371)
Q Consensus 29 ~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~h~~~V~~~~~~ 105 (371)
.++|.++..+..|+..+..++.++.. +|+ +++.|+.+++|+...- ++. ...+...++.--...+.++...
T Consensus 1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~Fv-----sgS~DGtVKvW~~~k~~~~~--~s~rS~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFV-----SGSDDGTVKVWNLRKLEGEG--GSARSELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred CccceEeehhhhccccccceeecCCCCceEE-----EecCCceEEEeeehhhhcCc--ceeeeeEEEeccCCceEEEEec
Confidence 46799999999999999988866533 344 4899999999994321 111 2233344554456789999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCc-------eEEEEe--CCCeeEEEe-e---cCC--EEEEecCCcEEEEEeCCC----
Q 041206 106 SGSNKLYSGSRDGRVSVWDRDSGR-------CVNVIT--NGAEIGCLI-S---EGS--WVFLGLPNAVKSWRVNAA---- 166 (371)
Q Consensus 106 ~~~~~l~s~~~dg~v~iwd~~~~~-------~~~~~~--~~~~~~~~~-~---~~~--~~~~~~~~~i~~~~~~~~---- 166 (371)
+.++.+|.++.||.|++.+++... +.+..+ ..+.+..+. + ... .+++..-+.|..||....
T Consensus 1108 ~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w 1187 (1431)
T KOG1240|consen 1108 GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW 1187 (1431)
T ss_pred cCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH
Confidence 999999999999999999988631 111111 123333332 2 233 334455688999998654
Q ss_pred ---------CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc--ceEEEEecCCc---e--eEecccc
Q 041206 167 ---------SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL--WFCSLSSSNDT---R--WNSKEEA 228 (371)
Q Consensus 167 ---------~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~---~--l~~~~~~ 228 (371)
.|++++.+|. ++++|+..|.+-+||++=+ .++....... +++.+..+|-. . +.++
T Consensus 1188 ~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~----~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~--- 1260 (1431)
T KOG1240|consen 1188 RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR----VPILSWEHPARAPIRHVWLCPTYPQESVSVSAG--- 1260 (1431)
T ss_pred hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecC----ceeecccCcccCCcceEEeeccCCCCceEEEec---
Confidence 8999999998 9999999999999999987 6666655444 77777776632 2 3444
Q ss_pred eeeee-CCCeEEEEECCCceEEEEeecC-----------------CC--cEEEEEEc--CCeEEEEeCCCcEEEEEc
Q 041206 229 AVFEF-CGHTTRTWNLDNLECVQTLKGH-----------------SD--TVTSLLFW--DEYLFSSSLDETIKIWLY 283 (371)
Q Consensus 229 ~~~~~-~dg~i~iwd~~~~~~~~~~~~~-----------------~~--~v~~~~~~--~~~l~s~~~dg~i~iwd~ 283 (371)
. ..+.|.+|++.+|.+.+.+-.. .. ......+. +..+++|+.|..|+.||.
T Consensus 1261 ----~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1261 ----SSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred ----ccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence 4 6789999999998776665432 01 11111222 568999999999999993
No 207
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.61 E-value=2.4e-14 Score=123.23 Aligned_cols=187 Identities=17% Similarity=0.187 Sum_probs=141.2
Q ss_pred CCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEe
Q 041206 84 NSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRV 163 (371)
Q Consensus 84 ~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 163 (371)
..++.-+.+.+|.+.|.+-.|+|||.-|+|++.||.|++|. ++|....++...
T Consensus 92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~-------------------------- 144 (737)
T KOG1524|consen 92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQN-------------------------- 144 (737)
T ss_pred ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhc--------------------------
Confidence 55677778899999999999999999999999999999998 456544443321
Q ss_pred CCCCeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeE
Q 041206 164 NAASVNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTT 238 (371)
Q Consensus 164 ~~~~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i 238 (371)
..+|+|++|.|+ .+++ ..+.+.|=.+... ..+...+.|. -|.++.|++... +++| ++|-..
T Consensus 145 -~~~v~c~~W~p~S~~vl~c--~g~h~~IKpL~~n----~k~i~WkAHDGiiL~~~W~~~s~lI~sg-------GED~kf 210 (737)
T KOG1524|consen 145 -EESIRCARWAPNSNSIVFC--QGGHISIKPLAAN----SKIIRWRAHDGLVLSLSWSTQSNIIASG-------GEDFRF 210 (737)
T ss_pred -CceeEEEEECCCCCceEEe--cCCeEEEeecccc----cceeEEeccCcEEEEeecCccccceeec-------CCceeE
Confidence 225999999998 3333 4456666666655 5566788999 999999999876 8899 999999
Q ss_pred EEEECCCceEEEEeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCCcceecceEEEEecCCCCEEEEecCCCeEEE
Q 041206 239 RTWNLDNLECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKNNAELSSLFGMLDAEAKPVLFSSGKDSAIRL 318 (371)
Q Consensus 239 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i 318 (371)
++||.. |..++.-..|..+|++++|+++.++..+.-.++|+ . .....++..+.+++++..+++|...|.+.+
T Consensus 211 KvWD~~-G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~---~----~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 211 KIWDAQ-GANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARF---S----SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred Eeeccc-CcccccCChhccceeeeeeccccceeeeeeeeeee---c----CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 999976 67777778899999999999654444333445552 1 223345666677777778999988887765
Q ss_pred E
Q 041206 319 Y 319 (371)
Q Consensus 319 w 319 (371)
=
T Consensus 283 A 283 (737)
T KOG1524|consen 283 A 283 (737)
T ss_pred e
Confidence 3
No 208
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=3.3e-14 Score=123.02 Aligned_cols=209 Identities=18% Similarity=0.178 Sum_probs=154.4
Q ss_pred ceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCc--cCCceeeEeeeCccCCeEEEEEcCCCC
Q 041206 32 GRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNT--TNSLATLMKLNGHKKAVTNVGLPSGSN 109 (371)
Q Consensus 32 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~l~~h~~~V~~~~~~~~~~ 109 (371)
-+++..+.+|...|.|++.++ ....|.+++.|+.|+.|+..+..++. -+...+...|.||++.|..+++|+...
T Consensus 334 ~epi~tfraH~gPVl~v~v~~----n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~ 409 (577)
T KOG0642|consen 334 VEPILTFRAHEGPVLCVVVPS----NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD 409 (577)
T ss_pred eeeeEEEecccCceEEEEecC----CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc
Confidence 567888999999999999888 55678889999999999866543322 222345678999999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeC---CCeeEEEeecCC---EEEE-ec-----------CCcEEEEEeCCC-----
Q 041206 110 KLYSGSRDGRVSVWDRDSGRCVNVITN---GAEIGCLISEGS---WVFL-GL-----------PNAVKSWRVNAA----- 166 (371)
Q Consensus 110 ~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~~~~~~~~~~---~~~~-~~-----------~~~i~~~~~~~~----- 166 (371)
.|++++.||++++|+...... .++.. +.....+.+... ..++ .. ...++++.-...
T Consensus 410 ~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~ 488 (577)
T KOG0642|consen 410 RLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRR 488 (577)
T ss_pred ceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccc
Confidence 999999999999999876655 33322 111222221111 0110 00 112222222111
Q ss_pred --CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEE
Q 041206 167 --SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRT 240 (371)
Q Consensus 167 --~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~i 240 (371)
.+.-+..+|+ +.+++..|+.|+++|..++ +++.....|. .++++++.|+|- |+++ +.|+.+++
T Consensus 489 ~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~----~~l~s~~a~~~svtslai~~ng~~l~s~-------s~d~sv~l 557 (577)
T KOG0642|consen 489 YPQINKVVSHPTADITFTAHEDRSIRFFDNKTG----KILHSMVAHKDSVTSLAIDPNGPYLMSG-------SHDGSVRL 557 (577)
T ss_pred cCccceEEecCCCCeeEecccCCceeccccccc----ccchheeeccceecceeecCCCceEEee-------cCCceeeh
Confidence 4566677776 8999999999999999999 8899999999 999999999985 9999 99999999
Q ss_pred EECCCceEEEEeecCC
Q 041206 241 WNLDNLECVQTLKGHS 256 (371)
Q Consensus 241 wd~~~~~~~~~~~~~~ 256 (371)
|.+....++.....|.
T Consensus 558 ~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 558 WKLDVKTCVLESTAHR 573 (577)
T ss_pred hhccchheeecccccc
Confidence 9998888877766664
No 209
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.59 E-value=5.5e-14 Score=121.02 Aligned_cols=155 Identities=15% Similarity=0.230 Sum_probs=121.8
Q ss_pred cCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEE------ecCCcEEEEEeCCCCe
Q 041206 96 KKAVTNVGLPS-GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFL------GLPNAVKSWRVNAASV 168 (371)
Q Consensus 96 ~~~V~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~v 168 (371)
+..|+|+.|-| +...++.+-.+|.+.++|.... .....+.......+..+.. ..++.+.-|.+-.+.|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-----~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~i 293 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-----CGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSI 293 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeecccc-----ccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccc
Confidence 36899999999 4456666778999999986211 1111111122222333222 2347888999999999
Q ss_pred eEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECC
Q 041206 169 NALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLD 244 (371)
Q Consensus 169 ~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~ 244 (371)
+.++|+|+ +|++.+.||.++|||..+. +.+..++..- ...|++|+|||+ +++| ++|--|.||.+.
T Consensus 294 n~f~FS~DG~~LA~VSqDGfLRvF~fdt~----eLlg~mkSYFGGLLCvcWSPDGKyIvtG-------GEDDLVtVwSf~ 362 (636)
T KOG2394|consen 294 NEFAFSPDGKYLATVSQDGFLRIFDFDTQ----ELLGVMKSYFGGLLCVCWSPDGKYIVTG-------GEDDLVTVWSFE 362 (636)
T ss_pred cceeEcCCCceEEEEecCceEEEeeccHH----HHHHHHHhhccceEEEEEcCCccEEEec-------CCcceEEEEEec
Confidence 99999999 9999999999999999987 6665555555 899999999998 8999 999999999999
Q ss_pred CceEEEEeecCCCcEEEEEEcC
Q 041206 245 NLECVQTLKGHSDTVTSLLFWD 266 (371)
Q Consensus 245 ~~~~~~~~~~~~~~v~~~~~~~ 266 (371)
.++.+..-++|...|..|+|++
T Consensus 363 erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 363 ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cceEEEeccccccceeeEeecc
Confidence 9999999999999999999985
No 210
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=3.4e-13 Score=111.89 Aligned_cols=246 Identities=8% Similarity=0.084 Sum_probs=178.6
Q ss_pred CccCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEE
Q 041206 94 GHKKAVTNVGLPSGS--NKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNAL 171 (371)
Q Consensus 94 ~h~~~V~~~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~ 171 (371)
.-...|.+++|.-++ +.|..++.|..+..+.+....+...... +..-.+.+++|..+
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~---------------------~~~~~l~~~~I~gl 111 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDD---------------------AKTVSLGTKSIKGL 111 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCcccccccc---------------------ccccccccccccch
Confidence 345678888887544 4566666777787777776655443311 11112244568888
Q ss_pred EEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce--eEecccceeeeeCC--CeEEEEECCCce
Q 041206 172 VVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR--WNSKEEAAVFEFCG--HTTRTWNLDNLE 247 (371)
Q Consensus 172 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~~~~~~~~d--g~i~iwd~~~~~ 247 (371)
......|++|..+|.+.+|....+.....++..+..+..+..+.-++... +++| +.. ..+.+||+++.+
T Consensus 112 ~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~G-------Gke~~n~lkiwdle~~~ 184 (412)
T KOG3881|consen 112 KLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATG-------GKENINELKIWDLEQSK 184 (412)
T ss_pred hhcCCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecC-------chhcccceeeeecccce
Confidence 88888999999999999999886543225566666666677777776543 5668 888 899999999876
Q ss_pred EEEEeecCC---------CcEEEEEEc----CCeEEEEeCCCcEEEEEccCCCCcce-----ecceEEEEecCCCCEEEE
Q 041206 248 CVQTLKGHS---------DTVTSLLFW----DEYLFSSSLDETIKIWLYTHTKNNAE-----LSSLFGMLDAEAKPVLFS 309 (371)
Q Consensus 248 ~~~~~~~~~---------~~v~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~l~~ 309 (371)
.+.+-+.-. -.++++.|- ...|++++.-+.+++||.+.++..-. -+.+.++...+.++++++
T Consensus 185 qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~ 264 (412)
T KOG3881|consen 185 QIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYT 264 (412)
T ss_pred eeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEE
Confidence 554332111 145567776 35899999999999999987664211 134555566667779999
Q ss_pred ecCCCeEEEEEcCCcceeeeec--CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccccee
Q 041206 310 SGKDSAIRLYELPSFKLRARIF--SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 310 ~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~ 367 (371)
|..-+.+..||++.++...... -.+.++++..+|.+ ++++++-|..|||+|+++.+++
T Consensus 265 gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 265 GNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred ecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 9999999999999999888744 37899999999999 9999999999999999985543
No 211
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.58 E-value=6.2e-13 Score=108.11 Aligned_cols=257 Identities=12% Similarity=0.109 Sum_probs=175.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEee--cCCEEEE--ecCCcEEEEEeCCC----------
Q 041206 101 NVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLIS--EGSWVFL--GLPNAVKSWRVNAA---------- 166 (371)
Q Consensus 101 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~i~~~~~~~~---------- 166 (371)
-++|||+|+++|+++.- .+.|-|.++-+..+.+..-+.+..+.. +..++++ ..+..|.+|++...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ 91 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ 91 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence 35799999999999876 788999988876665554444443332 3444444 34678999988654
Q ss_pred -CeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEec----------------
Q 041206 167 -SVNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSK---------------- 225 (371)
Q Consensus 167 -~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~---------------- 225 (371)
.+.+++|+|+ .|.+...+-.|.+|.+.+. ....++... .+..++|+|||++++-
T Consensus 92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~-----~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~ 166 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ-----KGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK 166 (447)
T ss_pred CcceeeeECCCcceEeeeecceeEEEEEEeccc-----eeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhH
Confidence 7889999998 6777788999999999985 233344444 7788999999984432
Q ss_pred --------------ccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEE-------
Q 041206 226 --------------EEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWL------- 282 (371)
Q Consensus 226 --------------~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd------- 282 (371)
.--+=++-.+..+.+||---.-.+..++ ..-.+..++|+ +++|+.|+.|+.+|+.+
T Consensus 167 ~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f 245 (447)
T KOG4497|consen 167 AWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPF 245 (447)
T ss_pred HHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeeh
Confidence 0011133445567777743222222222 23468889998 68999999999999877
Q ss_pred -------------------------------ccCC----------------------------C----CcceecceEEEE
Q 041206 283 -------------------------------YTHT----------------------------K----NNAELSSLFGML 299 (371)
Q Consensus 283 -------------------------------~~~~----------------------------~----~~~~~~~~~~~~ 299 (371)
+... + ...+...+..+.
T Consensus 246 ~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la 325 (447)
T KOG4497|consen 246 GEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA 325 (447)
T ss_pred hhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee
Confidence 0000 0 011112333445
Q ss_pred ecCCCCEEEEecC--CCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccc
Q 041206 300 DAEAKPVLFSSGK--DSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 300 ~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
++.+..++++-.. -+.+-+||++..++-..+....+|....|.|.. .|+.+.....+++|.....
T Consensus 326 fs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~ 393 (447)
T KOG4497|consen 326 FSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP 393 (447)
T ss_pred ecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCc
Confidence 6666656666543 257999999998887777788999999999998 7777766778999987653
No 212
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=3.3e-13 Score=122.15 Aligned_cols=226 Identities=13% Similarity=0.005 Sum_probs=143.4
Q ss_pred cceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceEEEEeCCCeeEEE
Q 041206 67 CRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRD---GRVSVWDRDSGRCVNVITNGAEIGCL 143 (371)
Q Consensus 67 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~ 143 (371)
+..|++|+ ..+...+.+..|...+...+|+|||+.|+..+.+ ..|++||+.+++.........
T Consensus 183 ~~~i~i~d---------~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g----- 248 (429)
T PRK01742 183 PYEVRVAD---------YDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG----- 248 (429)
T ss_pred eEEEEEEC---------CCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC-----
Confidence 45677776 2233356677888899999999999999988754 369999998876433221111
Q ss_pred eecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEE-eCCCeEEEE--eccCCCCcceeeEEEecCc-ceEEEEec
Q 041206 144 ISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAG-SEGGVISVW--KGTFVANPFKQVASIRAPL-WFCSLSSS 217 (371)
Q Consensus 144 ~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~-~~dg~v~iw--d~~~~~~~~~~~~~~~~~~-~v~~~~~~ 217 (371)
.....+|+|+ .|+.+ ..+|.+.|| |+.++ ....+..+. .+.+..|+
T Consensus 249 -----------------------~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~-----~~~~lt~~~~~~~~~~wS 300 (429)
T PRK01742 249 -----------------------HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG-----TPSQLTSGAGNNTEPSWS 300 (429)
T ss_pred -----------------------ccCceeECCCCCEEEEEEecCCcEEEEEEECCCC-----CeEeeccCCCCcCCEEEC
Confidence 1345788887 55554 467766655 55544 234455555 78899999
Q ss_pred CCce-eEecccceeeeeCCCeEEEEECCCc-eEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCccee-
Q 041206 218 NDTR-WNSKEEAAVFEFCGHTTRTWNLDNL-ECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAEL- 292 (371)
Q Consensus 218 ~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~- 292 (371)
|||+ ++.. ...++...||++... .....+ .+.. ....|+ +++|+..+.++ +.+||+.........
T Consensus 301 pDG~~i~f~------s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~ 370 (429)
T PRK01742 301 PDGQSILFT------SDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS 370 (429)
T ss_pred CCCCEEEEE------ECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC
Confidence 9996 5433 045677788876432 222223 3433 346677 67887777765 556998765422110
Q ss_pred -cceEEEEecCCCCEEEEecCCCeEEEEEc--CCcceeeeec-CCceEEEEEeCCC
Q 041206 293 -SSLFGMLDAEAKPVLFSSGKDSAIRLYEL--PSFKLRARIF-SRREVEVDQIGPA 344 (371)
Q Consensus 293 -~~~~~~~~~~~~~~l~~~~~d~~i~iwd~--~~~~~~~~~~-~~~~v~~~~~s~~ 344 (371)
.......+.+++++|+.++.++.+.+|++ .+++...++. +.+.+...+|+|-
T Consensus 371 ~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 371 TFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 01112234556668888888888888875 3466666665 4567888999984
No 213
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.57 E-value=5e-13 Score=108.15 Aligned_cols=199 Identities=10% Similarity=0.032 Sum_probs=160.9
Q ss_pred EEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc-eeEecccceeeeeC
Q 041206 159 KSWRVNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT-RWNSKEEAAVFEFC 234 (371)
Q Consensus 159 ~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~l~~~~~~~~~~~~ 234 (371)
..|..--.+|+|.+|+++ .++++.....|.||...... .+++..+++.|. .|+.+.|+|.. +++++ +.
T Consensus 4 ~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~-~w~~~htls~Hd~~vtgvdWap~snrIvtc-------s~ 75 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-LWEPAHTLSEHDKIVTGVDWAPKSNRIVTC-------SH 75 (361)
T ss_pred EEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCC-CceeceehhhhCcceeEEeecCCCCceeEc-------cC
Confidence 445555668999999999 89999999999999987653 247888999999 99999999987 69999 99
Q ss_pred CCeEEEEECC-Cc--eEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC--------cceecceEEEEec
Q 041206 235 GHTTRTWNLD-NL--ECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN--------NAELSSLFGMLDA 301 (371)
Q Consensus 235 dg~i~iwd~~-~~--~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~~ 301 (371)
|..-++|... .+ ++.-.+..++...+++.|+ ++.|++|+.-..|.+|-++.... ....+.+..+.+.
T Consensus 76 drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWh 155 (361)
T KOG1523|consen 76 DRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWH 155 (361)
T ss_pred CCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeecc
Confidence 9999999983 33 3445556788999999999 68999999999999999876552 2333566777788
Q ss_pred CCCCEEEEecCCCeEEEEEcC-----C-------------cceeeee-cCCceEEEEEeCCCC-eEEeeCCCCcEEEEEc
Q 041206 302 EAKPVLFSSGKDSAIRLYELP-----S-------------FKLRARI-FSRREVEVDQIGPAG-LFFPGDASGSVGVWKW 361 (371)
Q Consensus 302 ~~~~~l~~~~~d~~i~iwd~~-----~-------------~~~~~~~-~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~ 361 (371)
+++-++++|+.|+..|||..- + ++++.++ ...+.+..+.|+|.| .|+-.+.|..+.+=|.
T Consensus 156 pnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 156 PNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred CCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence 888799999999999999631 1 3344444 346889999999999 9999999999999887
Q ss_pred cccc
Q 041206 362 LLAE 365 (371)
Q Consensus 362 ~~~~ 365 (371)
..+.
T Consensus 236 ~~p~ 239 (361)
T KOG1523|consen 236 AGPS 239 (361)
T ss_pred CCCc
Confidence 6653
No 214
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.57 E-value=9.4e-15 Score=123.54 Aligned_cols=215 Identities=15% Similarity=0.225 Sum_probs=169.4
Q ss_pred cccCCCCceeeccCcc-------cccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCC
Q 041206 13 HKHSEGGETMMSDDDD-------LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNS 85 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (371)
.+++.+|+.|..++.. -.++++..++. -...|..+.|-....|++ -..-+++.+++ ..
T Consensus 135 ~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~A-----VAQK~y~yvYD---------~~ 199 (545)
T KOG1272|consen 135 LDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFA-----VAQKKYVYVYD---------NN 199 (545)
T ss_pred eeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHH-----hhhhceEEEec---------CC
Confidence 5689999999988765 23455554442 234444444433222222 45667888888 67
Q ss_pred ceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCC
Q 041206 86 LATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNA 165 (371)
Q Consensus 86 ~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 165 (371)
+..++.++.|. .|..+.|-|.--+|++++..|.++.-|+.+|+.+..+... .
T Consensus 200 GtElHClk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~---------------------------~ 251 (545)
T KOG1272|consen 200 GTELHCLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG---------------------------A 251 (545)
T ss_pred CcEEeehhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc---------------------------C
Confidence 78899998774 5999999999989999999999999999999998877653 3
Q ss_pred CCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEE
Q 041206 166 ASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTW 241 (371)
Q Consensus 166 ~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iw 241 (371)
+.+..++-+|- .+-+|...|+|.+|..... +++..+..|. +|.++++.++|+ +++. +.|..++||
T Consensus 252 G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk----ePLvKiLcH~g~V~siAv~~~G~YMaTt-------G~Dr~~kIW 320 (545)
T KOG1272|consen 252 GRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK----EPLVKILCHRGPVSSIAVDRGGRYMATT-------GLDRKVKIW 320 (545)
T ss_pred CccchhhcCCccceEEEcCCCceEEecCCCCc----chHHHHHhcCCCcceEEECCCCcEEeec-------ccccceeEe
Confidence 35666777776 7888999999999999988 8888999999 999999999997 8999 999999999
Q ss_pred ECCCceEEEEeecCCCcEEEEEEcCCeEEEEeCCCcEEEEE
Q 041206 242 NLDNLECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIWL 282 (371)
Q Consensus 242 d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd 282 (371)
|++....+.++.. ..+...++++..-+++++....+.+|.
T Consensus 321 DlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 321 DLRNFYQLHTYRT-PHPASNLSLSQKGLLALSYGDHVQIWK 360 (545)
T ss_pred eeccccccceeec-CCCccccccccccceeeecCCeeeeeh
Confidence 9998877766664 456778888977777777888899997
No 215
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.55 E-value=3.5e-12 Score=103.39 Aligned_cols=234 Identities=10% Similarity=0.040 Sum_probs=168.3
Q ss_pred eeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCC
Q 041206 91 KLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGR---CVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAAS 167 (371)
Q Consensus 91 ~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 167 (371)
.+.--..+|+|.+|++|...+|.+-....|.|+.....+ ...++.. |...
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~---------------------------Hd~~ 57 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSE---------------------------HDKI 57 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhh---------------------------hCcc
Confidence 333345799999999999999999999999999987665 3334433 5556
Q ss_pred eeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc-eeEecccceeeeeCCCeEEEEEC
Q 041206 168 VNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT-RWNSKEEAAVFEFCGHTTRTWNL 243 (371)
Q Consensus 168 v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~l~~~~~~~~~~~~dg~i~iwd~ 243 (371)
|+.++|.|. .|++++.|..-++|....+. .+++...+..++ ..+++.|+|.+ ++++| +....|.||-+
T Consensus 58 vtgvdWap~snrIvtcs~drnayVw~~~~~~-~WkptlvLlRiNrAAt~V~WsP~enkFAVg-------Sgar~isVcy~ 129 (361)
T KOG1523|consen 58 VTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG-TWKPTLVLLRINRAATCVKWSPKENKFAVG-------SGARLISVCYY 129 (361)
T ss_pred eeEEeecCCCCceeEccCCCCccccccCCCC-eeccceeEEEeccceeeEeecCcCceEEec-------cCccEEEEEEE
Confidence 999999998 99999999999999985332 345666677777 99999999977 59999 99999999887
Q ss_pred CCceE----EEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEc-----cCCCC-----------------cceecce
Q 041206 244 DNLEC----VQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLY-----THTKN-----------------NAELSSL 295 (371)
Q Consensus 244 ~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~-----~~~~~-----------------~~~~~~~ 295 (371)
+..+- .+.-+.+...|++++|+ +-+|++|+.|++.|+|.. +.... ......+
T Consensus 130 E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwv 209 (361)
T KOG1523|consen 130 EQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWV 209 (361)
T ss_pred ecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCce
Confidence 75332 12224577889999999 347889999999999982 11110 1112345
Q ss_pred EEEEecCCCCEEEEecCCCeEEEEEcCCcce-eeeec-CCceEEEEEeCCCCeEEeeCCCCcEEEE
Q 041206 296 FGMLDAEAKPVLFSSGKDSAIRLYELPSFKL-RARIF-SRREVEVDQIGPAGLFFPGDASGSVGVW 359 (371)
Q Consensus 296 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~-~~~~v~~~~~s~~~~l~~~~~dg~i~iw 359 (371)
..+.+++.+..|+-.+.|..+.+-|.....+ +.... ..-+..++.|-.+..++.++.|..-.++
T Consensus 210 h~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf 275 (361)
T KOG1523|consen 210 HGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYDCGPVLF 275 (361)
T ss_pred eeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCCCCceEE
Confidence 5566777777999999999999999877652 22222 2456777777655555555555433333
No 216
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1.3e-13 Score=117.49 Aligned_cols=278 Identities=17% Similarity=0.175 Sum_probs=195.9
Q ss_pred cccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcC--
Q 041206 29 LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPS-- 106 (371)
Q Consensus 29 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-- 106 (371)
+...++...|..|.+-|..+.|...+.+ ..+++.+..+-+|+ .......+.-..||...|....|-|
T Consensus 129 vqr~~l~~kL~~H~GcVntV~FN~~Gd~----l~SgSDD~~vv~Wd-------W~~~~~~l~f~SGH~~NvfQaKFiP~s 197 (559)
T KOG1334|consen 129 VQRLRLQKKLNKHKGCVNTVHFNQRGDV----LASGSDDLQVVVWD-------WVSGSPKLSFESGHCNNVFQAKFIPFS 197 (559)
T ss_pred HHHhhhhhcccCCCCccceeeecccCce----eeccCccceEEeeh-------hhccCcccccccccccchhhhhccCCC
Confidence 4457788889999999999999885543 34578888888888 4444445555678999999999988
Q ss_pred CCCEEEEEeCCCcEEEEECCC-CceE---EEEeCCCeeEEEe--ec--CCEEEEecCCcEEEEEeCCC------------
Q 041206 107 GSNKLYSGSRDGRVSVWDRDS-GRCV---NVITNGAEIGCLI--SE--GSWVFLGLPNAVKSWRVNAA------------ 166 (371)
Q Consensus 107 ~~~~l~s~~~dg~v~iwd~~~-~~~~---~~~~~~~~~~~~~--~~--~~~~~~~~~~~i~~~~~~~~------------ 166 (371)
+.+.+++++.||.|++=.+.. +.+. ...++.+++..+. ++ ..++.++.|+.+.-+|+...
T Consensus 198 ~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~ 277 (559)
T KOG1334|consen 198 GDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREAD 277 (559)
T ss_pred CCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccC
Confidence 456799999999999987653 3333 2233445555444 32 44555677888888888765
Q ss_pred -----CeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCc--ceeeEEE-----e-cCc-ceEEEEecCCce-eEecccc
Q 041206 167 -----SVNALVVNND---LLFAGSEGGVISVWKGTFVANP--FKQVASI-----R-APL-WFCSLSSSNDTR-WNSKEEA 228 (371)
Q Consensus 167 -----~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~-----~-~~~-~v~~~~~~~~~~-l~~~~~~ 228 (371)
..++++.+|. .+++++.|-.+++||.+..... ...+..+ . ... .|++++++.++. ++++
T Consensus 278 ~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS--- 354 (559)
T KOG1334|consen 278 EKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS--- 354 (559)
T ss_pred CccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee---
Confidence 4567777776 8999999999999998754321 0111111 1 222 899999997764 8888
Q ss_pred eeeeeCCCeEEEEECCC--c----------eEEEE-eecCCC--cEEEEEEc---CCeEEEEeCCCcEEEEEccCCCCc-
Q 041206 229 AVFEFCGHTTRTWNLDN--L----------ECVQT-LKGHSD--TVTSLLFW---DEYLFSSSLDETIKIWLYTHTKNN- 289 (371)
Q Consensus 229 ~~~~~~dg~i~iwd~~~--~----------~~~~~-~~~~~~--~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~- 289 (371)
..|-.|+++.-.- | ..++. +++|.. .|..+-|. .+|+++||.-|.|.||+-...+..
T Consensus 355 ----YnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~ 430 (559)
T KOG1334|consen 355 ----YNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIR 430 (559)
T ss_pred ----ecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHH
Confidence 8999999995432 2 22333 788865 68888887 379999999999999996655431
Q ss_pred ---ceecceEEEEecCCCCEEEEecCCCeEEEEEcCCc
Q 041206 290 ---AELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSF 324 (371)
Q Consensus 290 ---~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 324 (371)
+.-..+.++-.+|--++|++.+-|..|+||-..+.
T Consensus 431 ~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 431 FMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred HhhcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 11113444455555569999999999999988553
No 217
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=3.2e-13 Score=113.09 Aligned_cols=184 Identities=20% Similarity=0.201 Sum_probs=133.2
Q ss_pred eeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCee
Q 041206 61 CVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEI 140 (371)
Q Consensus 61 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 140 (371)
...++.|+.+++|+ .++...+.....|.+.|.++.|+||++.|++-+.| ..+||+++++..+......+.
T Consensus 159 latgg~dg~lRv~~--------~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k- 228 (398)
T KOG0771|consen 159 LATGGTDGTLRVWE--------WPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSK- 228 (398)
T ss_pred eeeccccceEEEEe--------cCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCccc-
Confidence 34578999999999 45677788888999999999999999999999999 899999999976665543111
Q ss_pred EEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC------EEEE-EeCCCeEEEEeccCCCC--cceeeEEEecCcce
Q 041206 141 GCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND------LLFA-GSEGGVISVWKGTFVAN--PFKQVASIRAPLWF 211 (371)
Q Consensus 141 ~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~------~l~~-~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~v 211 (371)
++ ....+.|..+ ++++ ....+.|+.||+..... ..+..+.+..++.|
T Consensus 229 -------~~-----------------~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~si 284 (398)
T KOG0771|consen 229 -------DE-----------------MFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSI 284 (398)
T ss_pred -------ch-----------------hhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcc
Confidence 00 1222233211 2222 22345566666543321 11222333444589
Q ss_pred EEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEe-ecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccC
Q 041206 212 CSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTL-KGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTH 285 (371)
Q Consensus 212 ~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~ 285 (371)
.+++++++|+ ++.| +.||.|.|++..+.+.++-. +.|...|+.+.|+ .+++++.+.+..+.+..+..
T Consensus 285 Ssl~VS~dGkf~AlG-------T~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 285 SSLAVSDDGKFLALG-------TMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eeEEEcCCCcEEEEe-------ccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999998 7888 99999999999998887655 4799999999999 46888888888888877654
No 218
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.51 E-value=2.2e-12 Score=111.32 Aligned_cols=182 Identities=12% Similarity=0.097 Sum_probs=133.7
Q ss_pred EEEEEeCCCeEEEEeccCCCCcceeeEE-EecCc-ceEEEEecCCc--eeEecccceeeeeCCCeEEEEECCC-------
Q 041206 177 LLFAGSEGGVISVWKGTFVANPFKQVAS-IRAPL-WFCSLSSSNDT--RWNSKEEAAVFEFCGHTTRTWNLDN------- 245 (371)
Q Consensus 177 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~-~v~~~~~~~~~--~l~~~~~~~~~~~~dg~i~iwd~~~------- 245 (371)
-+++|-.-|.|.+.|....... +.+.. ....+ .++|+.|-|.+ .++++ -.+|.+++||..-
T Consensus 187 dllIGf~tGqvq~idp~~~~~s-klfne~r~i~ktsvT~ikWvpg~~~~Fl~a-------~~sGnlyly~~~~~~~~t~p 258 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVS-KLFNEERLINKSSVTCIKWVPGSDSLFLVA-------HASGNLYLYDKEIVCGATAP 258 (636)
T ss_pred ceEEeeccCceEEecchhhHHH-HhhhhcccccccceEEEEEEeCCCceEEEE-------EecCceEEeeccccccCCCC
Confidence 6788888899999887663110 11111 11122 89999999954 47777 8899999997641
Q ss_pred -------c--------------eEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCc----ceecceEEE
Q 041206 246 -------L--------------ECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNN----AELSSLFGM 298 (371)
Q Consensus 246 -------~--------------~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~ 298 (371)
+ .++..+.--.+.|...+|+ +.+||+.+.||.+||||+...+.. .-+..+.++
T Consensus 259 ~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCv 338 (636)
T KOG2394|consen 259 SYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCV 338 (636)
T ss_pred cccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEE
Confidence 1 1222233334578888888 789999999999999998877643 333556666
Q ss_pred EecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCC----------------------------------
Q 041206 299 LDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGP---------------------------------- 343 (371)
Q Consensus 299 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~---------------------------------- 343 (371)
.|++++++|++|++|-.|.||.+...+.+.+-. |...|..++|.|
T Consensus 339 cWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S 418 (636)
T KOG2394|consen 339 CWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGS 418 (636)
T ss_pred EEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCC
Confidence 777777799999999999999999999888766 688999999882
Q ss_pred ------------C--C-eEEeeCCCCcEEEEEccccce
Q 041206 344 ------------A--G-LFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 344 ------------~--~-~l~~~~~dg~i~iw~~~~~~~ 366 (371)
+ . +|.+.+.|-.+.+||+....+
T Consensus 419 ~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 419 AEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred cCCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence 1 1 577888999999999986544
No 219
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.50 E-value=6.1e-11 Score=96.22 Aligned_cols=161 Identities=17% Similarity=0.239 Sum_probs=129.7
Q ss_pred CcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCC--------------CeeEEEEeCC--EE-EE
Q 041206 118 GRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAA--------------SVNALVVNND--LL-FA 180 (371)
Q Consensus 118 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------~v~~~~~~~~--~l-~~ 180 (371)
..|.|||-...+++.++....++..+......+++-.++.|.+|..... .+.+++-..+ .| +-
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFP 154 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcC
Confidence 4799999888889999999999999999999999999999999988744 2223332222 33 33
Q ss_pred EeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCe-EEEEECCCceEEEEeec--C
Q 041206 181 GSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHT-TRTWNLDNLECVQTLKG--H 255 (371)
Q Consensus 181 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~-i~iwd~~~~~~~~~~~~--~ 255 (371)
|-.-|.|+|-|+..... .....+..|. .|.|++.+.+|. ++++ +..|+ |+|||..+|+++++++. .
T Consensus 155 g~k~GqvQi~dL~~~~~--~~p~~I~AH~s~Iacv~Ln~~Gt~vATa-------StkGTLIRIFdt~~g~~l~E~RRG~d 225 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKP--NAPSIINAHDSDIACVALNLQGTLVATA-------STKGTLIRIFDTEDGTLLQELRRGVD 225 (346)
T ss_pred CCccceEEEEEhhhcCc--CCceEEEcccCceeEEEEcCCccEEEEe-------ccCcEEEEEEEcCCCcEeeeeecCCc
Confidence 45579999999987621 1346788999 999999999996 8888 88886 69999999999999874 3
Q ss_pred CCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCC
Q 041206 256 SDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTK 287 (371)
Q Consensus 256 ~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~ 287 (371)
...|.+++|+ ..+|+++|..|++.||.++...
T Consensus 226 ~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 226 RADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred hheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 4589999999 5699999999999999987654
No 220
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.49 E-value=4.4e-12 Score=103.78 Aligned_cols=312 Identities=15% Similarity=0.184 Sum_probs=201.1
Q ss_pred cceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeee-CccCCeEEEEEcCCCC
Q 041206 31 KGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLN-GHKKAVTNVGLPSGSN 109 (371)
Q Consensus 31 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~~~~~~ 109 (371)
+-.+++.++||.+.++....-| ........+.++.+++|. ..+.++.-..+. .-..+++++.+.++..
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~----~e~gv~~~s~drtvrv~l-------krds~q~wpsI~~~mP~~~~~~~y~~e~~ 81 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIP----KEEGVISVSEDRTVRVWL-------KRDSGQYWPSIYHYMPSPCSAMEYVSESR 81 (404)
T ss_pred chhhhhhhcCchhhhhhheecc----CCCCeEEccccceeeeEE-------eccccccCchhhhhCCCCceEeeeeccce
Confidence 4456778899999988776555 444445568899999999 444444433332 2356899999999999
Q ss_pred EEEEEeCCCcEEEEECCCC----ceEEEEe-CCCeeEEEeec--CCEEEE-ecCCcEEEEEeCCC----------CeeEE
Q 041206 110 KLYSGSRDGRVSVWDRDSG----RCVNVIT-NGAEIGCLISE--GSWVFL-GLPNAVKSWRVNAA----------SVNAL 171 (371)
Q Consensus 110 ~l~s~~~dg~v~iwd~~~~----~~~~~~~-~~~~~~~~~~~--~~~~~~-~~~~~i~~~~~~~~----------~v~~~ 171 (371)
.|+.|-..|++.-+.+... ...+... +...+..+.++ ..++++ +.|..+.---.+.+ ...++
T Consensus 82 ~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~ 161 (404)
T KOG1409|consen 82 RLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASAL 161 (404)
T ss_pred EEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCC
Confidence 9999999999998876532 2222222 34455555553 344444 34444333222222 11111
Q ss_pred EEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCce-E
Q 041206 172 VVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLE-C 248 (371)
Q Consensus 172 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~-~ 248 (371)
.++-.+.+.|...|.|.+..+..... .++.++.+|. .+.+++|.+..+ +++| ..|..+.+||+..++ .
T Consensus 162 ~~d~~~~fvGd~~gqvt~lr~~~~~~--~~i~~~~~h~~~~~~l~Wd~~~~~LfSg-------~~d~~vi~wdigg~~g~ 232 (404)
T KOG1409|consen 162 QFDALYAFVGDHSGQITMLKLEQNGC--QLITTFNGHTGEVTCLKWDPGQRLLFSG-------ASDHSVIMWDIGGRKGT 232 (404)
T ss_pred ceeeEEEEecccccceEEEEEeecCC--ceEEEEcCcccceEEEEEcCCCcEEEec-------cccCceEEEeccCCcce
Confidence 11111666777778777776654422 6788999999 999999999664 8999 999999999997544 3
Q ss_pred EEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcc------------------------------------
Q 041206 249 VQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNA------------------------------------ 290 (371)
Q Consensus 249 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~------------------------------------ 290 (371)
...+.+|...|..+.+- -..+++++.||.|.+|+....+...
T Consensus 233 ~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~c 312 (404)
T KOG1409|consen 233 AYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHC 312 (404)
T ss_pred eeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhh
Confidence 46778999999998876 5799999999999999954433100
Q ss_pred --eecceEEEEecCCCCEEEEecCCCeEEEEEcCCcc-------eeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEE
Q 041206 291 --ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFK-------LRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVW 359 (371)
Q Consensus 291 --~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw 359 (371)
.-..++........ ...+-+..-.+|+-|.-..+ ++..+. ....|+.+.+..+- +|+|++.|..|+||
T Consensus 313 rkcg~avc~~c~s~~~-~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iw 391 (404)
T KOG1409|consen 313 RKCGKAVCGKCSSNRS-SYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIW 391 (404)
T ss_pred hhhhhhcCcccccCcc-ccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEE
Confidence 00112212222222 22222333456665543211 122221 15578888887766 99999999999999
Q ss_pred Eccc
Q 041206 360 KWLL 363 (371)
Q Consensus 360 ~~~~ 363 (371)
|+..
T Consensus 392 d~~~ 395 (404)
T KOG1409|consen 392 DVRS 395 (404)
T ss_pred echh
Confidence 9875
No 221
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=5e-12 Score=105.10 Aligned_cols=217 Identities=13% Similarity=0.236 Sum_probs=158.9
Q ss_pred eeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce----EEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCC
Q 041206 91 KLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRC----VNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAA 166 (371)
Q Consensus 91 ~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 166 (371)
...+.+++|..++.. ...|++|-.+|.+.+|....+.. +..+..+.
T Consensus 100 ~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~---------------------------- 149 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGP---------------------------- 149 (412)
T ss_pred ccccccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecCC----------------------------
Confidence 445566777777765 34788889999999999885431 12222111
Q ss_pred CeeEEEEeC---CEEEEEeCC--CeEEEEeccCCCCcceeeE------EEecCcceEEEEecCC--c-eeEecccceeee
Q 041206 167 SVNALVVNN---DLLFAGSEG--GVISVWKGTFVANPFKQVA------SIRAPLWFCSLSSSND--T-RWNSKEEAAVFE 232 (371)
Q Consensus 167 ~v~~~~~~~---~~l~~~~~d--g~v~iwd~~~~~~~~~~~~------~~~~~~~v~~~~~~~~--~-~l~~~~~~~~~~ 232 (371)
.+..+.-.+ ..+++|+.. ..+.+||+++..+.++... .+..+-+++++.|-+. . +|+++
T Consensus 150 g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~------- 222 (412)
T KOG3881|consen 150 GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATI------- 222 (412)
T ss_pred ceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEE-------
Confidence 234444433 377778888 8899999988732111000 1111126678888776 4 49999
Q ss_pred eCCCeEEEEECCCc-eEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcce-----ecceEEEEecCCC
Q 041206 233 FCGHTTRTWNLDNL-ECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAE-----LSSLFGMLDAEAK 304 (371)
Q Consensus 233 ~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~ 304 (371)
+.-+.+++||.+.+ +++..|..-..+++++... +++++++..-+.+..||++....... ..++..+...+..
T Consensus 223 T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~ 302 (412)
T KOG3881|consen 223 TRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTH 302 (412)
T ss_pred ecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCC
Confidence 99999999999864 5677887778889888776 78999999999999999998775333 4567777788887
Q ss_pred CEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCC
Q 041206 305 PVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPA 344 (371)
Q Consensus 305 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~ 344 (371)
+++++++-|..|||+|+.+.+++...+-...++.+-+.++
T Consensus 303 ~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 303 PVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred ceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 8999999999999999999888888887888888888664
No 222
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.45 E-value=2.9e-11 Score=99.05 Aligned_cols=246 Identities=15% Similarity=0.161 Sum_probs=153.2
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----eEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeE
Q 041206 96 KKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGR-----CVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNA 170 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~ 170 (371)
.+-|.++.|...|.+||||..+|.|.++.-+... ....+..+.+-. .+ ++..+ -...|..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEF------DY--------LkSle-ieEKink 89 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEF------DY--------LKSLE-IEEKINK 89 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCccc------ch--------hhhhh-hhhhhhh
Confidence 4578999999999999999999999999754322 112222211100 00 00000 0013444
Q ss_pred EEEeCC----EEEEEeCCCeEEEEeccCCCCc-------------------------------ceeeEEE-ecCc-ceEE
Q 041206 171 LVVNND----LLFAGSEGGVISVWKGTFVANP-------------------------------FKQVASI-RAPL-WFCS 213 (371)
Q Consensus 171 ~~~~~~----~l~~~~~dg~v~iwd~~~~~~~-------------------------------~~~~~~~-~~~~-~v~~ 213 (371)
+.|.++ .++..+.|.+|++|.+...... ..+.+.+ ..|. .|++
T Consensus 90 Irw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNS 169 (433)
T KOG1354|consen 90 IRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINS 169 (433)
T ss_pred ceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeee
Confidence 444433 4444445555555544322110 0111122 2466 8999
Q ss_pred EEecCCceeEecccceeeeeCCCeEEEEECCCceE---EEEeecC-----CCcEEEEEEc---CCeEEEEeCCCcEEEEE
Q 041206 214 LSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLEC---VQTLKGH-----SDTVTSLLFW---DEYLFSSSLDETIKIWL 282 (371)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~---~~~~~~~-----~~~v~~~~~~---~~~l~s~~~dg~i~iwd 282 (371)
+.++.|+..+.. ..|=.|.+|.++--.. +-.++++ ..-|++..|+ .+.++..+..|+|++-|
T Consensus 170 IS~NsD~Et~lS-------ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 170 ISVNSDKETFLS-------ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred eeecCccceEee-------ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 999999875445 6788999999863221 1222333 3467888888 47899999999999999
Q ss_pred ccCCCC--------------------cceecceEEEEecCCCCEEEEecCCCeEEEEEcC-Ccceeeeec-C--------
Q 041206 283 YTHTKN--------------------NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELP-SFKLRARIF-S-------- 332 (371)
Q Consensus 283 ~~~~~~--------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~-~-------- 332 (371)
++.... ...+.++..+.+.+.++++++-.. -+|++||++ ..+++..+. |
T Consensus 243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc 321 (433)
T KOG1354|consen 243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLC 321 (433)
T ss_pred chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHH
Confidence 874320 233456777778888888887654 589999994 444444443 2
Q ss_pred ----CceE---EEEEeCCCC-eEEeeCCCCcEEEEEcccc
Q 041206 333 ----RREV---EVDQIGPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 333 ----~~~v---~~~~~s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
...| ..++|+-++ .++||+.....++|++..+
T Consensus 322 ~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 322 SLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 2222 457898888 9999999999999996544
No 223
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.45 E-value=2.1e-10 Score=100.61 Aligned_cols=216 Identities=14% Similarity=0.190 Sum_probs=130.8
Q ss_pred EEEeCCCcEEEEECCC-Cc--eEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEE-eCCC
Q 041206 112 YSGSRDGRVSVWDRDS-GR--CVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAG-SEGG 185 (371)
Q Consensus 112 ~s~~~dg~v~iwd~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~-~~dg 185 (371)
++...++.|.+||+.+ ++ .+..+... +....++++|+ +|+++ ..++
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~----------------------------~~~~~l~~spd~~~lyv~~~~~~ 57 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDVP----------------------------GQVQPMVISPDKRHLYVGVRPEF 57 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEecC----------------------------CCCccEEECCCCCEEEEEECCCC
Confidence 3446789999999964 33 33333321 23566788877 55555 4578
Q ss_pred eEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eEecccceeeeeCCCeEEEEECCC-c---eEEEEeecCCCcEE
Q 041206 186 VISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDN-L---ECVQTLKGHSDTVT 260 (371)
Q Consensus 186 ~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~-~---~~~~~~~~~~~~v~ 260 (371)
.|.+|++... .................++++|+++ ++++ ...++.|.+|++.+ + +.+..+.+ .....
T Consensus 58 ~i~~~~~~~~-g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~------~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~ 129 (330)
T PRK11028 58 RVLSYRIADD-GALTFAAESPLPGSPTHISTDHQGRFLFSA------SYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCH 129 (330)
T ss_pred cEEEEEECCC-CceEEeeeecCCCCceEEEECCCCCEEEEE------EcCCCeEEEEEECCCCCCCCceeeccC-CCccc
Confidence 8999998732 1112233322222567899999997 5444 04589999999974 2 22333332 23456
Q ss_pred EEEEc--CCeEE-EEeCCCcEEEEEccCCCCcc----------eecceEEEEecCCCCEEEEecC-CCeEEEEEcCC--c
Q 041206 261 SLLFW--DEYLF-SSSLDETIKIWLYTHTKNNA----------ELSSLFGMLDAEAKPVLFSSGK-DSAIRLYELPS--F 324 (371)
Q Consensus 261 ~~~~~--~~~l~-s~~~dg~i~iwd~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~--~ 324 (371)
.++++ +++++ +...++.|.+||+....... .-.....+.+.+++++++++.. ++.|.+|+++. +
T Consensus 130 ~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~ 209 (330)
T PRK11028 130 SANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG 209 (330)
T ss_pred EeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC
Confidence 67777 45664 55567999999987532110 0011223444555557766654 89999999973 2
Q ss_pred c--eeeeecC-------CceEEEEEeCCCC-eEEeeC-CCCcEEEEEccc
Q 041206 325 K--LRARIFS-------RREVEVDQIGPAG-LFFPGD-ASGSVGVWKWLL 363 (371)
Q Consensus 325 ~--~~~~~~~-------~~~v~~~~~s~~~-~l~~~~-~dg~i~iw~~~~ 363 (371)
+ .+..+.. ......+.++|++ +++++. .++.|.+|++..
T Consensus 210 ~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 210 EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 2 2322211 1223468899999 666664 578999999964
No 224
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.45 E-value=4.6e-10 Score=100.37 Aligned_cols=272 Identities=10% Similarity=0.060 Sum_probs=170.2
Q ss_pred CCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEE
Q 041206 64 GDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCL 143 (371)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 143 (371)
+..++.+..++ ..+++.+...+-.......... ++..++.++.+|.+..+|..+|+.+........+.+.
T Consensus 71 ~~~~g~v~a~d--------~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 140 (377)
T TIGR03300 71 ADADGTVVALD--------AETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSP 140 (377)
T ss_pred ECCCCeEEEEE--------ccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecC
Confidence 44556677766 3456666665543322222222 4678888889999999999999998887765543321
Q ss_pred --eecCCEEEEecCCcEEEEEeCCCCe-eE---------------EEEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEE
Q 041206 144 --ISEGSWVFLGLPNAVKSWRVNAASV-NA---------------LVVNNDLLFAGSEGGVISVWKGTFVANPFKQVASI 205 (371)
Q Consensus 144 --~~~~~~~~~~~~~~i~~~~~~~~~v-~~---------------~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 205 (371)
..++..++...++.+..+|..++.+ .. .....+.++.+..++.+..+|++++. .+-..
T Consensus 141 p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~----~~W~~ 216 (377)
T TIGR03300 141 PLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQ----PLWEQ 216 (377)
T ss_pred CEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCC----Eeeee
Confidence 2234444446688899999877632 11 11222367788889999999998883 32221
Q ss_pred ecCc--------ceEEEEec---CCceeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEcCCeEEEEeC
Q 041206 206 RAPL--------WFCSLSSS---NDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDEYLFSSSL 274 (371)
Q Consensus 206 ~~~~--------~v~~~~~~---~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~ 274 (371)
.... ....+.-+ .++.++.+ +.+|.++.+|.++++.+..... .........++.++.++.
T Consensus 217 ~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~-------~~~g~l~a~d~~tG~~~W~~~~--~~~~~p~~~~~~vyv~~~ 287 (377)
T TIGR03300 217 RVALPKGRTELERLVDVDGDPVVDGGQVYAV-------SYQGRVAALDLRSGRVLWKRDA--SSYQGPAVDDNRLYVTDA 287 (377)
T ss_pred ccccCCCCCchhhhhccCCccEEECCEEEEE-------EcCCEEEEEECCCCcEEEeecc--CCccCceEeCCEEEEECC
Confidence 1100 00011111 13456666 8899999999999988766542 122334455788888899
Q ss_pred CCcEEEEEccCCCCccee----cceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecCCc-eEEEEEeCCCCeEEe
Q 041206 275 DETIKIWLYTHTKNNAEL----SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRR-EVEVDQIGPAGLFFP 349 (371)
Q Consensus 275 dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~v~~~~~s~~~~l~~ 349 (371)
+|.+..+|....+..-.. ..........+ ..+++++.+|.|+++|..+++.+.++.... .+..--...++.|+.
T Consensus 288 ~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g-~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v 366 (377)
T TIGR03300 288 DGVVVALDRRSGSELWKNDELKYRQLTAPAVVG-GYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLV 366 (377)
T ss_pred CCeEEEEECCCCcEEEccccccCCccccCEEEC-CEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEE
Confidence 999999998766531111 01111111123 378889999999999999999998876432 332221222347888
Q ss_pred eCCCCcEEEE
Q 041206 350 GDASGSVGVW 359 (371)
Q Consensus 350 ~~~dg~i~iw 359 (371)
++.||.|+.|
T Consensus 367 ~~~dG~l~~~ 376 (377)
T TIGR03300 367 QTRDGDLYAF 376 (377)
T ss_pred EeCCceEEEe
Confidence 8899999876
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=1e-10 Score=105.78 Aligned_cols=214 Identities=10% Similarity=-0.029 Sum_probs=131.0
Q ss_pred eEeeeCccCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCC
Q 041206 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSR---DGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNA 165 (371)
Q Consensus 89 ~~~l~~h~~~V~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 165 (371)
.+.+..+...+...+|+|||+.|+..+. +..|.+|++.+++.........
T Consensus 191 ~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~--------------------------- 243 (429)
T PRK03629 191 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR--------------------------- 243 (429)
T ss_pred CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC---------------------------
Confidence 3445557778999999999999886542 3579999998886543322111
Q ss_pred CCeeEEEEeCC--EEEE-EeCCC--eEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeC-CC-
Q 041206 166 ASVNALVVNND--LLFA-GSEGG--VISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFC-GH- 236 (371)
Q Consensus 166 ~~v~~~~~~~~--~l~~-~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~-dg- 236 (371)
.+....|+|+ .|+. .+.+| .|++||+.++ +.. .+..+. .+....|+|||+ ++.. +. ++
T Consensus 244 -~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg----~~~-~lt~~~~~~~~~~wSPDG~~I~f~-------s~~~g~ 310 (429)
T PRK03629 244 -HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG----QIR-QVTDGRSNNTEPTWFPDSQNLAYT-------SDQAGR 310 (429)
T ss_pred -CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC----CEE-EccCCCCCcCceEECCCCCEEEEE-------eCCCCC
Confidence 2345678888 4443 34444 5888999876 333 333334 778899999996 5544 43 33
Q ss_pred -eEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCC---CcEEEEEccCCCCcceec--ceEEEEecCCCCEEE
Q 041206 237 -TTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLD---ETIKIWLYTHTKNNAELS--SLFGMLDAEAKPVLF 308 (371)
Q Consensus 237 -~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~l~ 308 (371)
.|+++|+.+++.. .+..+........|+ +++|+..+.+ ..|.+||+.......... ......+.+++..|+
T Consensus 311 ~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~ 389 (429)
T PRK03629 311 PQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVI 389 (429)
T ss_pred ceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEE
Confidence 5566677766543 333344445567787 5677665543 358888876654221110 011123445555777
Q ss_pred EecCCCe---EEEEEcCCcceeeeec-CCceEEEEEeCCC
Q 041206 309 SSGKDSA---IRLYELPSFKLRARIF-SRREVEVDQIGPA 344 (371)
Q Consensus 309 ~~~~d~~---i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~ 344 (371)
..+.++. +.++++.. +....+. +.+.+...+|+|-
T Consensus 390 ~~s~~~~~~~l~~~~~~G-~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 390 YSSSQGMGSVLNLVSTDG-RFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred EEEcCCCceEEEEEECCC-CCeEECccCCCCcCCcccCCC
Confidence 7766653 67778754 4444444 4667888889873
No 226
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=9.4e-11 Score=106.44 Aligned_cols=216 Identities=11% Similarity=-0.026 Sum_probs=130.9
Q ss_pred ceeeEeeeCccCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEE
Q 041206 86 LATLMKLNGHKKAVTNVGLPSGSNKLYSGSRD---GRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWR 162 (371)
Q Consensus 86 ~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 162 (371)
+...+.+..|...+.+.+|+||++.|+..+.+ ..|.+||+.+++........
T Consensus 193 g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~------------------------- 247 (433)
T PRK04922 193 GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR------------------------- 247 (433)
T ss_pred CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC-------------------------
Confidence 34455666788889999999999999987743 46999999888654322211
Q ss_pred eCCCCeeEEEEeCC--EE-EEEeCCC--eEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeee-C
Q 041206 163 VNAASVNALVVNND--LL-FAGSEGG--VISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEF-C 234 (371)
Q Consensus 163 ~~~~~v~~~~~~~~--~l-~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~-~ 234 (371)
+...+..|+|+ .+ ++.+.+| .|++||+.++ + ...+..+. .....+|+||++ ++.. + .
T Consensus 248 ---g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g----~-~~~lt~~~~~~~~~~~spDG~~l~f~-------sd~ 312 (433)
T PRK04922 248 ---GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR----Q-LTRLTNHFGIDTEPTWAPDGKSIYFT-------SDR 312 (433)
T ss_pred ---CCccCceECCCCCEEEEEEeCCCCceEEEEECCCC----C-eEECccCCCCccceEECCCCCEEEEE-------ECC
Confidence 12345678877 33 4555555 5999999876 3 23344444 556789999996 5544 3 3
Q ss_pred CC--eEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCC---cEEEEEccCCCCcceec--ceEEEEecCCCC
Q 041206 235 GH--TTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDE---TIKIWLYTHTKNNAELS--SLFGMLDAEAKP 305 (371)
Q Consensus 235 dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg---~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~ 305 (371)
+| .|+++|+.+++... +..+.......+|+ +++|+..+.++ .|.+||+...+...... ......+.++++
T Consensus 313 ~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~ 391 (433)
T PRK04922 313 GGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGS 391 (433)
T ss_pred CCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCC
Confidence 44 47777887765432 32233344467887 67777655433 58999986554321100 111123344444
Q ss_pred EEEEecC---CCeEEEEEcCCcceeeeec-CCceEEEEEeCC
Q 041206 306 VLFSSGK---DSAIRLYELPSFKLRARIF-SRREVEVDQIGP 343 (371)
Q Consensus 306 ~l~~~~~---d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~ 343 (371)
+++..+. .+.|.++++... ....+. +.+.+...+|+|
T Consensus 392 ~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 392 MVLYATREGGRGVLAAVSTDGR-VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEEEEecCCceEEEEEECCCC-ceEEcccCCCCCCCCccCC
Confidence 5554443 346888888543 334443 345677778877
No 227
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=3.3e-10 Score=93.62 Aligned_cols=251 Identities=16% Similarity=0.194 Sum_probs=166.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC--CCeeEEEee---cCCEEEEecCCcEEEEEeCCC-----
Q 041206 97 KAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN--GAEIGCLIS---EGSWVFLGLPNAVKSWRVNAA----- 166 (371)
Q Consensus 97 ~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~----- 166 (371)
-.+..++|++.-..+|++..|-.|+++|-.. .+...++. ...+.|+.+ ..+.++++..+.|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r 177 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANR 177 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCccccccc
Confidence 4678899999878899999999999999665 55555554 456888876 366778888888999976432
Q ss_pred -------------------CeeEEEEeCC--EEEEEeC-CCeEEEEeccCCCCcceeeEEE-ecCcceEEEEecCCce-e
Q 041206 167 -------------------SVNALVVNND--LLFAGSE-GGVISVWKGTFVANPFKQVASI-RAPLWFCSLSSSNDTR-W 222 (371)
Q Consensus 167 -------------------~v~~~~~~~~--~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-l 222 (371)
.|+++.|+++ .+++++. +..|.|||..++. .+.-. ++...+.-+.|+||+. +
T Consensus 178 ~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~----~~pL~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ----KIPLIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred ccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC----cccccccCCCceeeEEEcCCCCEE
Confidence 8999999999 7777765 5789999999873 22222 2233889999999996 8
Q ss_pred EecccceeeeeCCCeEEEEECCC-ceEEEEeecCCCcEEEEEEc--CCe-EEEEeCCCcEEEEEccCCCCcce-------
Q 041206 223 NSKEEAAVFEFCGHTTRTWNLDN-LECVQTLKGHSDTVTSLLFW--DEY-LFSSSLDETIKIWLYTHTKNNAE------- 291 (371)
Q Consensus 223 ~~~~~~~~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~--~~~-l~s~~~dg~i~iwd~~~~~~~~~------- 291 (371)
+++ +-|+..++|.... ....+ ...-.+.|...+|+ |.+ |++++. .-++|.+....+...
T Consensus 254 faA-------t~davfrlw~e~q~wt~er-w~lgsgrvqtacWspcGsfLLf~~sg--sp~lysl~f~~~~~~~~~~~~~ 323 (445)
T KOG2139|consen 254 FAA-------TCDAVFRLWQENQSWTKER-WILGSGRVQTACWSPCGSFLLFACSG--SPRLYSLTFDGEDSVFLRPQSI 323 (445)
T ss_pred EEe-------cccceeeeehhcccceecc-eeccCCceeeeeecCCCCEEEEEEcC--CceEEEEeecCCCccccCcccc
Confidence 888 9999999995543 33333 22345588888998 444 444443 344555433322100
Q ss_pred ---------------------ecceEEEEecCCCCEEEEecCCC--------eEEEEEcCCcceeeeec----CCceEEE
Q 041206 292 ---------------------LSSLFGMLDAEAKPVLFSSGKDS--------AIRLYELPSFKLRARIF----SRREVEV 338 (371)
Q Consensus 292 ---------------------~~~~~~~~~~~~~~~l~~~~~d~--------~i~iwd~~~~~~~~~~~----~~~~v~~ 338 (371)
......+.+.+.+.++++.-..+ .|.+||.+.--.+.-.. .......
T Consensus 324 k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~ 403 (445)
T KOG2139|consen 324 KRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAY 403 (445)
T ss_pred eeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCce
Confidence 11223345555565777764433 36667766543332221 2344566
Q ss_pred EEeCC---CC-eEEeeCCCCcEEEEEcc
Q 041206 339 DQIGP---AG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 339 ~~~s~---~~-~l~~~~~dg~i~iw~~~ 362 (371)
+.|+| ++ +|..+-..|.+.-|++.
T Consensus 404 IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 404 ISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EEeeecccCCcEEEEEeccCceEeeeeE
Confidence 77776 33 77777788888888764
No 228
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.39 E-value=1.8e-11 Score=113.63 Aligned_cols=194 Identities=18% Similarity=0.207 Sum_probs=148.7
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeC
Q 041206 96 KKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNN 175 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~ 175 (371)
.+.|....+.-+...++.+..+..+-+||...+.....+.......-.. ..-+-.++
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~-----------------------~~~~g~s~ 143 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYS-----------------------SLIIGDSA 143 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEe-----------------------EEEEeccC
Confidence 3455556666677788888888899999988877776666544322111 11122334
Q ss_pred C--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEE-
Q 041206 176 D--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQ- 250 (371)
Q Consensus 176 ~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~- 250 (371)
+ ++++|+.-+.|.+|+.... .....+.+|. .|.++.++.||+ +++. +.|.++++|++.+.+...
T Consensus 144 ~~~~i~~gsv~~~iivW~~~~d----n~p~~l~GHeG~iF~i~~s~dg~~i~s~-------SdDRsiRlW~i~s~~~~~~ 212 (967)
T KOG0974|consen 144 EELYIASGSVFGEIIVWKPHED----NKPIRLKGHEGSIFSIVTSLDGRYIASV-------SDDRSIRLWPIDSREVLGC 212 (967)
T ss_pred cEEEEEeccccccEEEEecccc----CCcceecccCCceEEEEEccCCcEEEEE-------ecCcceeeeecccccccCc
Confidence 4 8999999999999999844 2333788999 999999999996 8999 999999999999988765
Q ss_pred EeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCC----cceecceEEEEecCCCCEEEEecCCCeEEEEEcCC
Q 041206 251 TLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKN----NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPS 323 (371)
Q Consensus 251 ~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 323 (371)
..-+|+..|..+.|.+++++|++.|.+.++|+..-.+- ......+..+..+.+..++++++.|+.+++|++..
T Consensus 213 ~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 213 TGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccccccceeEEEEeccceeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 66689999999999988999999999999996433221 12223455667777787999999999999999865
No 229
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=5.6e-11 Score=107.69 Aligned_cols=182 Identities=14% Similarity=0.013 Sum_probs=115.8
Q ss_pred CeeEEEEeCC--EEEEEeCC---CeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eEecccceeeeeCCCeE--
Q 041206 167 SVNALVVNND--LLFAGSEG---GVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFCGHTT-- 238 (371)
Q Consensus 167 ~v~~~~~~~~--~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i-- 238 (371)
.+.+..|+|+ .++..+.+ ..|++||+.++.. +.+..+.+ ....++|+|||+ ++.+ .+.+|.+
T Consensus 205 ~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~--~~l~~~~g--~~~~~~wSPDG~~La~~------~~~~g~~~I 274 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR--KVVASFRG--HNGAPAFSPDGSRLAFA------SSKDGVLNI 274 (429)
T ss_pred ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce--EEEecCCC--ccCceeECCCCCEEEEE------EecCCcEEE
Confidence 4788999998 66666543 4699999987621 22333333 344689999996 5544 0457755
Q ss_pred EEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEE-eCCCcEEEEEccCCCCcce-ec--ceEEEEecCCCCEEEEecC
Q 041206 239 RTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSS-SLDETIKIWLYTHTKNNAE-LS--SLFGMLDAEAKPVLFSSGK 312 (371)
Q Consensus 239 ~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~i~iwd~~~~~~~~~-~~--~~~~~~~~~~~~~l~~~~~ 312 (371)
++||+.+++. ..+..+...+....|+ ++.|+.. ..++...||++........ +. ... ..+.++++.|+..+.
T Consensus 275 y~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~-~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 275 YVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYS-AQISADGKTLVMING 352 (429)
T ss_pred EEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCC-ccCCCCCCEEEEEcC
Confidence 4557766654 4556677778889998 5555544 4678889998754322111 10 111 234445557777766
Q ss_pred CCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEcc
Q 041206 313 DSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 313 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~ 362 (371)
++ +.+||+.+++....... .......|+||| .|+.++.+|.+.+|.+.
T Consensus 353 ~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 353 DN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred CC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 55 56699988765432222 233567899999 88888889988888763
No 230
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=5.6e-12 Score=109.52 Aligned_cols=279 Identities=15% Similarity=0.217 Sum_probs=186.2
Q ss_pred eEEEEEeeccceeeeeeee-cceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEE
Q 041206 34 AEEREEMFGFGLAAMAIRV-CNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLY 112 (371)
Q Consensus 34 ~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~ 112 (371)
.+..+.||+..|..++.-. .+.|+ +.+.|+.+++|+..++++..... .+..+++.|+.+|.++.|-.+-++++
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFi-----SASkDKTVKLWSik~EgD~~~ts-aCQfTY~aHkk~i~~igfL~~lr~i~ 800 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFI-----SASKDKTVKLWSIKPEGDEIGTS-ACQFTYQAHKKPIHDIGFLADLRSIA 800 (1034)
T ss_pred eeecccCcHHHhHHHHhccccccee-----eccCCceEEEEEeccccCccccc-eeeeEhhhccCcccceeeeeccceee
Confidence 3456889999998887543 33344 47899999999998887766544 57789999999999999999888888
Q ss_pred EEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCC---CeeEEEE-eCC-EEEEEeCCCeE
Q 041206 113 SGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAA---SVNALVV-NND-LLFAGSEGGVI 187 (371)
Q Consensus 113 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~v~~~~~-~~~-~l~~~~~dg~v 187 (371)
++ ||.|.+||.--++.+..... +...+ .|.|+.- +.. .++-++...+|
T Consensus 801 Sc--D~giHlWDPFigr~Laq~~d-------------------------apk~~a~~~ikcl~nv~~~iliAgcsaeSTV 853 (1034)
T KOG4190|consen 801 SC--DGGIHLWDPFIGRLLAQMED-------------------------APKEGAGGNIKCLENVDRHILIAGCSAESTV 853 (1034)
T ss_pred ec--cCcceeecccccchhHhhhc-------------------------CcccCCCceeEecccCcchheeeeccchhhh
Confidence 76 68899999876665543221 11111 2444433 222 44444778999
Q ss_pred EEEeccCCCCcceeeEEEe-----cCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEE
Q 041206 188 SVWKGTFVANPFKQVASIR-----APL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVT 260 (371)
Q Consensus 188 ~iwd~~~~~~~~~~~~~~~-----~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 260 (371)
+++|.+.. +....++ +.+ .++++++.+.|. ++++ -..|.|.+.|.++|+.+..++...-...
T Consensus 854 Kl~DaRsc----e~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~-------LSnGci~~LDaR~G~vINswrpmecdll 922 (1034)
T KOG4190|consen 854 KLFDARSC----EWTCELKVCNAPGPNALTRAIAVADKGNKLAAA-------LSNGCIAILDARNGKVINSWRPMECDLL 922 (1034)
T ss_pred eeeecccc----cceeeEEeccCCCCchheeEEEeccCcchhhHH-------hcCCcEEEEecCCCceeccCCcccchhh
Confidence 99999887 3333333 344 789999999886 8888 8999999999999999988876555444
Q ss_pred EEEEc-CCeEEEEeCCCcEEE-EEccCCCC----cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCc----ceeeee
Q 041206 261 SLLFW-DEYLFSSSLDETIKI-WLYTHTKN----NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSF----KLRARI 330 (371)
Q Consensus 261 ~~~~~-~~~l~s~~~dg~i~i-wd~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~ 330 (371)
.++-- ++.++....|.++.+ |..-.+.. +.+.... .+...-+.-+++....+.+.+|--... ..+.++
T Consensus 923 qlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepa--hflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKi 1000 (1034)
T KOG4190|consen 923 QLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPA--HFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKI 1000 (1034)
T ss_pred hhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcch--hhhhccCceeEEeccCcEEEEEecchhhhhhhhhccc
Confidence 44433 567777778888888 76221110 0000000 011112335777777777888853221 111122
Q ss_pred c---CCceEEEEEeCCCC-eEEeeCCCCcEEE
Q 041206 331 F---SRREVEVDQIGPAG-LFFPGDASGSVGV 358 (371)
Q Consensus 331 ~---~~~~v~~~~~s~~~-~l~~~~~dg~i~i 358 (371)
. -.+..++++.-|-+ -+++|...|.|.+
T Consensus 1001 R~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1001 RPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred cccccCCccceeeeccccchhhccCCCCceee
Confidence 1 25678889988988 8888989998875
No 231
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.38 E-value=5.7e-11 Score=110.35 Aligned_cols=175 Identities=13% Similarity=0.146 Sum_probs=133.2
Q ss_pred CEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc--ceEE---EEecCCc-eeEecccceeeeeCCCeEEEEECCCceEE
Q 041206 176 DLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL--WFCS---LSSSNDT-RWNSKEEAAVFEFCGHTTRTWNLDNLECV 249 (371)
Q Consensus 176 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~v~~---~~~~~~~-~l~~~~~~~~~~~~dg~i~iwd~~~~~~~ 249 (371)
..++.++.++.+.+||.... .......... ...+ +-.+++. .+++| +.-+.|.+|+....+.-
T Consensus 100 k~i~l~~~~ns~~i~d~~~~----~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~g-------sv~~~iivW~~~~dn~p 168 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNS----SVLSKIQSDERCTLYSSLIIGDSAEELYIASG-------SVFGEIIVWKPHEDNKP 168 (967)
T ss_pred ceEEEEEcCceEEEEecccC----ceehhcCCCceEEEEeEEEEeccCcEEEEEec-------cccccEEEEeccccCCc
Confidence 38999999999999999887 5555555444 2222 2233433 38888 99999999999744433
Q ss_pred EEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcc-----eecceEEEEecCCCCEEEEecCCCeEEEEEcC
Q 041206 250 QTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNA-----ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELP 322 (371)
Q Consensus 250 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 322 (371)
..+.+|.+.|.++.++ +.+++++|.|.++|+|++...+... +...+..+...+. .+++++.|-+.++|+.+
T Consensus 169 ~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 169 IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN 246 (967)
T ss_pred ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc
Confidence 4688999999999996 8999999999999999998877543 2234444444444 79999999999999765
Q ss_pred Ccceeeeec-C-CceEEEEEeCCCC-eEEeeCCCCcEEEEEcccc
Q 041206 323 SFKLRARIF-S-RREVEVDQIGPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 323 ~~~~~~~~~-~-~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
..++ ..+. | ...++.++..++. .++|++.||.+++|++...
T Consensus 247 ~~~l-~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 247 GTQL-EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ccee-hhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 5333 3443 3 6789999999988 9999999999999998754
No 232
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=9.4e-11 Score=102.30 Aligned_cols=186 Identities=19% Similarity=0.279 Sum_probs=130.1
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--E
Q 041206 100 TNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--L 177 (371)
Q Consensus 100 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~ 177 (371)
..++++.-..-|+.++....|+-++++.|..+..+.. ..+.++++..++- +
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~---------------------------~~~~lN~v~in~~hgL 189 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET---------------------------DSGELNVVSINEEHGL 189 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEcccccccccccc---------------------------ccccceeeeecCccce
Confidence 4555654333355555556699999999998877764 3346888888877 8
Q ss_pred EEEEeCCCeEEEEeccCCCCcceeeEEEec------Cc------ceEEEEecCCce-eEecccceeeeeCCCeEEEEECC
Q 041206 178 LFAGSEGGVISVWKGTFVANPFKQVASIRA------PL------WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLD 244 (371)
Q Consensus 178 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~------~~------~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~ 244 (371)
|++|+.+|.|..||.+.. ..+..+.. +. .|+++.|+.+|. +++| +.+|.+.|||++
T Consensus 190 la~Gt~~g~VEfwDpR~k----srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVG-------ts~G~v~iyDLR 258 (703)
T KOG2321|consen 190 LACGTEDGVVEFWDPRDK----SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVG-------TSTGSVLIYDLR 258 (703)
T ss_pred EEecccCceEEEecchhh----hhheeeecccccCCCccccccCcceEEEecCCceeEEee-------ccCCcEEEEEcc
Confidence 999999999999999886 33333321 11 599999999996 9999 999999999999
Q ss_pred CceEEEEee-cCCCcEEEEEEc----CCeEEEEeCCCcEEEEEccCCCCccee---cceEEE-EecCCCCEEEEecCCCe
Q 041206 245 NLECVQTLK-GHSDTVTSLLFW----DEYLFSSSLDETIKIWLYTHTKNNAEL---SSLFGM-LDAEAKPVLFSSGKDSA 315 (371)
Q Consensus 245 ~~~~~~~~~-~~~~~v~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~-~~~~~~~~l~~~~~d~~ 315 (371)
+.+++..-. +..-+|..+.|. .+.+++ .....++|||-..++....+ ..+... +.+..+ +++++-.++.
T Consensus 259 a~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sG-m~f~Ane~~~ 336 (703)
T KOG2321|consen 259 ASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSG-MFFTANESSK 336 (703)
T ss_pred cCCceeecccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccccCCcCceeeecCCc-eEEEecCCCc
Confidence 988875432 223478888886 234444 35568999997666642222 122222 555555 8999988888
Q ss_pred EEEEEcCCcc
Q 041206 316 IRLYELPSFK 325 (371)
Q Consensus 316 i~iwd~~~~~ 325 (371)
+..|=+...-
T Consensus 337 m~~yyiP~LG 346 (703)
T KOG2321|consen 337 MHTYYIPSLG 346 (703)
T ss_pred ceeEEccccC
Confidence 8888766543
No 233
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=8.5e-10 Score=100.35 Aligned_cols=217 Identities=12% Similarity=-0.018 Sum_probs=133.1
Q ss_pred CceeeEeeeCccCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEE
Q 041206 85 SLATLMKLNGHKKAVTNVGLPSGSNKLYSGSR---DGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSW 161 (371)
Q Consensus 85 ~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 161 (371)
.+...+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.......
T Consensus 190 dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~------------------------- 244 (435)
T PRK05137 190 DGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNF------------------------- 244 (435)
T ss_pred CCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecC-------------------------
Confidence 34455667788899999999999999888763 46899999998875432221
Q ss_pred EeCCCCeeEEEEeCC--E-EEEEeCCCe--EEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeee-
Q 041206 162 RVNAASVNALVVNND--L-LFAGSEGGV--ISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEF- 233 (371)
Q Consensus 162 ~~~~~~v~~~~~~~~--~-l~~~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~- 233 (371)
.+.+.+.+|+|+ . +++.+.++. |++||+.++ + ...+..+. ......|+||++ ++.. +
T Consensus 245 ---~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~----~-~~~Lt~~~~~~~~~~~spDG~~i~f~-------s~ 309 (435)
T PRK05137 245 ---PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG----T-TTRLTDSPAIDTSPSYSPDGSQIVFE-------SD 309 (435)
T ss_pred ---CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCC----c-eEEccCCCCccCceeEcCCCCEEEEE-------EC
Confidence 123556788887 3 445555554 777788775 2 33444455 567789999996 5544 3
Q ss_pred CC--CeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCC---CcEEEEEccCCCCccee--cceEEEEecCCC
Q 041206 234 CG--HTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLD---ETIKIWLYTHTKNNAEL--SSLFGMLDAEAK 304 (371)
Q Consensus 234 ~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~i~iwd~~~~~~~~~~--~~~~~~~~~~~~ 304 (371)
.+ ..|+++|+.+++.. .+..+...+....|+ +++|+..+.+ ..|.+||+......... .......+.+++
T Consensus 310 ~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG 388 (435)
T PRK05137 310 RSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNG 388 (435)
T ss_pred CCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCC
Confidence 23 37888998776543 343344556667787 6677766543 35778886443221000 011222334444
Q ss_pred CEEEE-ecCC-----CeEEEEEcCCcceeeeecCCceEEEEEeCC
Q 041206 305 PVLFS-SGKD-----SAIRLYELPSFKLRARIFSRREVEVDQIGP 343 (371)
Q Consensus 305 ~~l~~-~~~d-----~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~ 343 (371)
+.|+. .... ..+.++|+..+.. ..+.....+...+|+|
T Consensus 389 ~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~~~~~p~Wsp 432 (435)
T PRK05137 389 RVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPGDASDPAWSP 432 (435)
T ss_pred CEEEEEEccCCCCCcceEEEEECCCCce-EEccCCCCccCcccCC
Confidence 45544 3322 3588888876544 3443444566677776
No 234
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.35 E-value=1.7e-11 Score=119.40 Aligned_cols=220 Identities=14% Similarity=0.195 Sum_probs=165.9
Q ss_pred eeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEE
Q 041206 92 LNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNAL 171 (371)
Q Consensus 92 l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~ 171 (371)
++.|-..|.++.-+|...+.+||+.||.|++|....++.+..+...++ ..|+.+
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--------------------------s~vtr~ 2257 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--------------------------SRVTRS 2257 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc--------------------------chhhhh
Confidence 444667788888899889999999999999999999988877765332 247777
Q ss_pred EEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCC---
Q 041206 172 VVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDN--- 245 (371)
Q Consensus 172 ~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~--- 245 (371)
.|+.+ .+..+..||.+.+|.... ++....+.|+ ....+.|-.. .+++++.. +.++.+.+||..-
T Consensus 2258 ~f~~qGnk~~i~d~dg~l~l~q~~p-----k~~~s~qchnk~~~Df~Fi~s-~~~tag~s----~d~~n~~lwDtl~~~~ 2327 (2439)
T KOG1064|consen 2258 RFNHQGNKFGIVDGDGDLSLWQASP-----KPYTSWQCHNKALSDFRFIGS-LLATAGRS----SDNRNVCLWDTLLPPM 2327 (2439)
T ss_pred hhcccCCceeeeccCCceeecccCC-----cceeccccCCccccceeeeeh-hhhccccC----CCCCcccchhcccCcc
Confidence 77766 788888999999999983 6888889998 8888888773 24443222 6678999999753
Q ss_pred ceEEEEeecCCCcEEEEEEcC--CeEEEEeCCCcEEEEEccCCCCcceecceEEEEecCCCCEEEEecCCCeEEEEEcCC
Q 041206 246 LECVQTLKGHSDTVTSLLFWD--EYLFSSSLDETIKIWLYTHTKNNAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPS 323 (371)
Q Consensus 246 ~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 323 (371)
..++. ..|.+.++++++-| +.|++|+.+|.|++||++..+....+.. .. ...++++|+..|.++||++..
T Consensus 2328 ~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2328 NSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred cceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----hh-hhheeeccCcccceEEEEccc
Confidence 22344 67999999999984 6899999999999999988776555533 12 445899999999999999999
Q ss_pred cceeeeecCCceE--------EEEEeCCCCeEEeeCCCCc
Q 041206 324 FKLRARIFSRREV--------EVDQIGPAGLFFPGDASGS 355 (371)
Q Consensus 324 ~~~~~~~~~~~~v--------~~~~~s~~~~l~~~~~dg~ 355 (371)
...+..+.+...- ..+...+.++|.+++.||+
T Consensus 2400 ~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2400 FGLLHTFPSEHAKQGFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred cchhhcCchhhcccchhhhcCceeeeccCceEEEecCCCC
Confidence 8777776631111 2333334447777777763
No 235
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=3.4e-10 Score=102.46 Aligned_cols=220 Identities=14% Similarity=-0.014 Sum_probs=126.8
Q ss_pred CceeeEeeeCccCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEE
Q 041206 85 SLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRD---GRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSW 161 (371)
Q Consensus 85 ~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 161 (371)
++...+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++........
T Consensus 184 dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~------------------------ 239 (427)
T PRK02889 184 DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK------------------------ 239 (427)
T ss_pred CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC------------------------
Confidence 344445566788899999999999999887643 35999999988764432211
Q ss_pred EeCCCCeeEEEEeCC--EE-EEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCC
Q 041206 162 RVNAASVNALVVNND--LL-FAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGH 236 (371)
Q Consensus 162 ~~~~~~v~~~~~~~~--~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg 236 (371)
+.+.+..|+|+ .+ ++.+.+|...+|.+.... .....+..+. ......|+|||+ ++... ..++
T Consensus 240 ----g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~---~~~~~lt~~~~~~~~~~wSpDG~~l~f~s------~~~g 306 (427)
T PRK02889 240 ----GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADG---SGLRRLTQSSGIDTEPFFSPDGRSIYFTS------DRGG 306 (427)
T ss_pred ----CCccceEECCCCCEEEEEEccCCCceEEEEECCC---CCcEECCCCCCCCcCeEEcCCCCEEEEEe------cCCC
Confidence 12456788888 44 456777776666543221 1233444444 556788999996 54430 3345
Q ss_pred eEEEE--ECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCC---cEEEEEccCCCCcceec--ceEEEEecCCCCEE
Q 041206 237 TTRTW--NLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDE---TIKIWLYTHTKNNAELS--SLFGMLDAEAKPVL 307 (371)
Q Consensus 237 ~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg---~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~l 307 (371)
...+| ++.+++.. .+..+........|+ +++|+..+.++ .|.+||+...+...... ......+.++++.|
T Consensus 307 ~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l 385 (427)
T PRK02889 307 APQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYI 385 (427)
T ss_pred CcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEE
Confidence 55555 44554432 222222333456777 67887766554 69999987654321110 01122334444455
Q ss_pred EEecC-CC--eEEEEEcCCcceeeeec-CCceEEEEEeCC
Q 041206 308 FSSGK-DS--AIRLYELPSFKLRARIF-SRREVEVDQIGP 343 (371)
Q Consensus 308 ~~~~~-d~--~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~ 343 (371)
+..+. .| .+.+.+.. ++....+. +.+.+...+|+|
T Consensus 386 ~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 386 LYATQQGGRSVLAAVSSD-GRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred EEEEecCCCEEEEEEECC-CCceEEeecCCCCCCCCccCC
Confidence 55443 33 35566663 44444443 356677778877
No 236
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.34 E-value=3.5e-10 Score=90.92 Aligned_cols=177 Identities=12% Similarity=0.033 Sum_probs=126.6
Q ss_pred EEEEEeCCCeEEEEeccCCCCcceeeEEEecC---c----ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceE
Q 041206 177 LLFAGSEGGVISVWKGTFVANPFKQVASIRAP---L----WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLEC 248 (371)
Q Consensus 177 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~---~----~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~ 248 (371)
.++-+...|.|.+|..... .....+++- . ...++.|++.+. ++++ ..+|.+.+-+......
T Consensus 87 ~l~~a~a~G~i~~~r~~~~----~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs-------~s~G~~~~v~~t~~~l 155 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDED----ESSVHLRGLSSKKISVVEALSLDISTSGTKIFVS-------DSRGSISGVYETEMVL 155 (339)
T ss_pred eeeeccccceEEEEeeccc----eeeeeecccchhhhhheeeeEEEeeccCceEEEE-------cCCCcEEEEecceeee
Confidence 6677778899999976654 222233322 2 245778888774 8888 8899998766665544
Q ss_pred E--EEeecCCCcEEEEEEc---CCeEEEEeCCCcEEEEEccCCCC------cceecceEEE-EecCCCCEEEEecCCCeE
Q 041206 249 V--QTLKGHSDTVTSLLFW---DEYLFSSSLDETIKIWLYTHTKN------NAELSSLFGM-LDAEAKPVLFSSGKDSAI 316 (371)
Q Consensus 249 ~--~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~-~~~~~~~~l~~~~~d~~i 316 (371)
. +.++.|..+.....|+ ++.+.+|+.|+.+..||++.+.. ..+-..++++ .+++.+.++++|+.|-.|
T Consensus 156 e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i 235 (339)
T KOG0280|consen 156 EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECI 235 (339)
T ss_pred eecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccce
Confidence 3 4889999999999998 78999999999999999995442 2222344444 445566799999999999
Q ss_pred EEEEcCC-cceeeeecCCceEEEEEeCCCC--eEEeeCCCCcEEEEEcccc
Q 041206 317 RLYELPS-FKLRARIFSRREVEVDQIGPAG--LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 317 ~iwd~~~-~~~~~~~~~~~~v~~~~~s~~~--~l~~~~~dg~i~iw~~~~~ 364 (371)
++||.++ ++++..-...+.|+.+.++|.- .++.++.-.-.+|-+.+.+
T Consensus 236 ~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 236 RVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred eeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 9999995 5677666667999999999965 4444444444556565543
No 237
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.33 E-value=5.1e-09 Score=90.49 Aligned_cols=298 Identities=12% Similarity=0.106 Sum_probs=185.8
Q ss_pred ceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCC-----
Q 041206 44 GLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDG----- 118 (371)
Q Consensus 44 ~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg----- 118 (371)
.+..+.++|++.++. .....-|.+|. .+.+..+..+. | ..|.-+.|+|.++||.|=+..+
T Consensus 34 p~~~~~~SP~G~~l~-----~~~~~~V~~~~--------g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe 98 (561)
T COG5354 34 PVAYVSESPLGTYLF-----SEHAAGVECWG--------GPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPE 98 (561)
T ss_pred chhheeecCcchhee-----hhhccceEEcc--------ccchhheeeee-c-CCceecccCcccceeeeeccCCccChh
Confidence 444556778777655 33445577777 23333444444 3 4699999999999999865443
Q ss_pred ----------cEEEEECCCCceEEEEeCCCe------eEEEeecCCEEEEecCCcEEEEEeCCC-------------Cee
Q 041206 119 ----------RVSVWDRDSGRCVNVITNGAE------IGCLISEGSWVFLGLPNAVKSWRVNAA-------------SVN 169 (371)
Q Consensus 119 ----------~v~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~v~ 169 (371)
.+.+||+.+|..+..+..... +.....++++++--..+.+.++++ +. .+.
T Consensus 99 ~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~ 177 (561)
T COG5354 99 IEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGIL 177 (561)
T ss_pred hccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhcccccee
Confidence 499999999999988876322 444555666666556677888885 22 567
Q ss_pred EEEEeCC----EEEE-----EeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEec-------ccceee
Q 041206 170 ALVVNND----LLFA-----GSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSK-------EEAAVF 231 (371)
Q Consensus 170 ~~~~~~~----~l~~-----~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~-------~~~~~~ 231 (371)
...++|. .|+. ...++.+++|.+... ..+.+..-.. .=..+.|.+.|. +++- +...
T Consensus 178 dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~----s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsy-- 251 (561)
T COG5354 178 DFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN----SVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSY-- 251 (561)
T ss_pred eEEecCCCCCceEEEEccccCCCCcEEEEEEccCC----CeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccce--
Confidence 7777776 3332 245678888888755 3333332223 345677888775 2211 0000
Q ss_pred eeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEE--EEeCCCcEEEEEccCCCC-cceecceEEEEecCCCCE
Q 041206 232 EFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLF--SSSLDETIKIWLYTHTKN-NAELSSLFGMLDAEAKPV 306 (371)
Q Consensus 232 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~--s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~ 306 (371)
.....++++++....+ .....-.++|...+|. ++.++ +|-.+-.+.++|++..-. ..+-..-....+++..++
T Consensus 252 -fgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~ 329 (561)
T COG5354 252 -FGESNLYLLRITERSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERY 329 (561)
T ss_pred -eccceEEEEeeccccc-ceeccccccceeeeecccCCceeEEecccccceeecccccceEEecCCcccccccccCcccE
Confidence 2245788898885433 2322568899999997 44444 445788888998766531 111111122244555557
Q ss_pred EEEecCC---CeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeC------CCCcEEEEEccccc
Q 041206 307 LFSSGKD---SAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGD------ASGSVGVWKWLLAE 365 (371)
Q Consensus 307 l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~------~dg~i~iw~~~~~~ 365 (371)
++.++.| |.+-+||......+..-.......-+.|+||+ ++.+.. .|..|+||++....
T Consensus 330 il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 330 ILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred EEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 7776654 68999999876655533333445667899999 444432 47899999997543
No 238
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.33 E-value=6.2e-08 Score=83.59 Aligned_cols=259 Identities=11% Similarity=0.058 Sum_probs=148.5
Q ss_pred ceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCceEEEEeCC
Q 041206 68 RFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSR----------DGRVSVWDRDSGRCVNVITNG 137 (371)
Q Consensus 68 ~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~ 137 (371)
+.+.+.+ ....+.+.++..-..+-. + ++||++.|+.+.. +..|.+||..+++.+..+..+
T Consensus 27 ~~v~ViD--------~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p 96 (352)
T TIGR02658 27 TQVYTID--------GEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP 96 (352)
T ss_pred ceEEEEE--------CCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC
Confidence 5566666 456777777775444433 4 9999999888765 788999999999999998864
Q ss_pred Ce----------eEEEeecCCEEEEec---CCcEEEEEeCCCCeeEEEEeCC--EEEEE--------eCCCeEEEEeccC
Q 041206 138 AE----------IGCLISEGSWVFLGL---PNAVKSWRVNAASVNALVVNND--LLFAG--------SEGGVISVWKGTF 194 (371)
Q Consensus 138 ~~----------~~~~~~~~~~~~~~~---~~~i~~~~~~~~~v~~~~~~~~--~l~~~--------~~dg~v~iwd~~~ 194 (371)
.. ...+.++++++++.+ ++.+.++|+.++.+..----|+ .++.. +.||......+..
T Consensus 97 ~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~ 176 (352)
T TIGR02658 97 EGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGT 176 (352)
T ss_pred CCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecC
Confidence 33 556677888888754 6889999999887766333344 33333 3444444333322
Q ss_pred CCCcc-eeeEEEecCc-ceE-EEEecC-Cce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEcCCeE
Q 041206 195 VANPF-KQVASIRAPL-WFC-SLSSSN-DTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDEYL 269 (371)
Q Consensus 195 ~~~~~-~~~~~~~~~~-~v~-~~~~~~-~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l 269 (371)
..... .....+.... ++. .-.+.+ +++ ++. +..|+|++.|+...+.... . .+.-+.+...
T Consensus 177 ~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~v--------s~eG~V~~id~~~~~~~~~-~----~~~~~~~~~~-- 241 (352)
T TIGR02658 177 KGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWP--------TYTGKIFQIDLSSGDAKFL-P----AIEAFTEAEK-- 241 (352)
T ss_pred CCceEEeeeeeecCCccccccCCceEcCCCcEEEE--------ecCCeEEEEecCCCcceec-c----eeeecccccc--
Confidence 21100 0000111100 000 002334 554 333 3348888888654332110 0 0000000000
Q ss_pred EEEeCCCcEEEEEccCCCCcceecceEEEEecCCCCEEEE-e---------cCCCeEEEEEcCCcceeeeecCCceEEEE
Q 041206 270 FSSSLDETIKIWLYTHTKNNAELSSLFGMLDAEAKPVLFS-S---------GKDSAIRLYELPSFKLRARIFSRREVEVD 339 (371)
Q Consensus 270 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~-~---------~~d~~i~iwd~~~~~~~~~~~~~~~v~~~ 339 (371)
.++ |. ..-...+. ..++++ .+++ . ...+.|.++|..+++.+..+.....+..+
T Consensus 242 ----~~~----wr------P~g~q~ia--~~~dg~-~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~i 304 (352)
T TIGR02658 242 ----ADG----WR------PGGWQQVA--YHRARD-RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSI 304 (352)
T ss_pred ----ccc----cC------CCcceeEE--EcCCCC-EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeE
Confidence 000 00 00000111 233333 3333 2 12258999999999999999888899999
Q ss_pred EeCCCC--eEE-eeCCCCcEEEEEccccceec
Q 041206 340 QIGPAG--LFF-PGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 340 ~~s~~~--~l~-~~~~dg~i~iw~~~~~~~~~ 368 (371)
+++||+ +|+ +...++.|.++|..+.+..+
T Consensus 305 avS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 305 NVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred EECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 999999 444 44468899999998876654
No 239
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=3e-09 Score=92.87 Aligned_cols=265 Identities=11% Similarity=0.096 Sum_probs=157.4
Q ss_pred CeEEEEEcCCCCEEEEE-----eC-----CCcEEEEECCCCceEEEEeCCCee-EEEe--ecCCEEEEecCCcEEEEEeC
Q 041206 98 AVTNVGLPSGSNKLYSG-----SR-----DGRVSVWDRDSGRCVNVITNGAEI-GCLI--SEGSWVFLGLPNAVKSWRVN 164 (371)
Q Consensus 98 ~V~~~~~~~~~~~l~s~-----~~-----dg~v~iwd~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~i~~~~~~ 164 (371)
.++++.|+|.+++|.|= .. .-.+.+|+++++.....+...... .+.. .++.+.+--..+.+.+|+..
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~ 154 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLG 154 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecC
Confidence 78999999999998762 12 235779999996555555432221 1222 23333333445666666654
Q ss_pred CC----------CeeEEEEeCC----EEEE-----EeCCCeEEEEeccCCCCcceee--EEEecCcceEEEEecCCce--
Q 041206 165 AA----------SVNALVVNND----LLFA-----GSEGGVISVWKGTFVANPFKQV--ASIRAPLWFCSLSSSNDTR-- 221 (371)
Q Consensus 165 ~~----------~v~~~~~~~~----~l~~-----~~~dg~v~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~-- 221 (371)
.. .+..+.++|. .+++ .+.-+.|+||........ ..+ ++|-.. .-..+.|++-|.
T Consensus 155 ~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~-~~~a~ksFFka-dkvqm~WN~~gt~L 232 (566)
T KOG2315|consen 155 SFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH-QPVANKSFFKA-DKVQMKWNKLGTAL 232 (566)
T ss_pred CccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc-chhhhcccccc-ceeEEEeccCCceE
Confidence 43 6777777765 3333 344567999987632110 111 111111 233566776553
Q ss_pred e--Eec--ccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeE--EEEeCCCcEEEEEccCCCCc-cee
Q 041206 222 W--NSK--EEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYL--FSSSLDETIKIWLYTHTKNN-AEL 292 (371)
Q Consensus 222 l--~~~--~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l--~s~~~dg~i~iwd~~~~~~~-~~~ 292 (371)
| ++. ...=..-..+.++++.++....+.-.+. ..++|.++.|+ +..+ +.|-+-.++.|||++-.-.. -.-
T Consensus 233 LvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~e 311 (566)
T KOG2315|consen 233 LVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPE 311 (566)
T ss_pred EEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCC
Confidence 2 222 0000000234578888888555554444 47899999999 4333 44557788999997654321 111
Q ss_pred cceEEEEecCCCCEEEEecC---CCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeC------CCCcEEEEEcc
Q 041206 293 SSLFGMLDAEAKPVLFSSGK---DSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGD------ASGSVGVWKWL 362 (371)
Q Consensus 293 ~~~~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~------~dg~i~iw~~~ 362 (371)
..-..+++.+.+++++.++. -|.|.|||+.+.+++..+.... -+-..|+||| +|+|+. -|+.++||++.
T Consensus 312 gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 312 GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 12223355555557666654 3789999999988888776433 4567899999 666665 37899999997
Q ss_pred ccce
Q 041206 363 LAEQ 366 (371)
Q Consensus 363 ~~~~ 366 (371)
....
T Consensus 391 G~~l 394 (566)
T KOG2315|consen 391 GSLL 394 (566)
T ss_pred Ccee
Confidence 6443
No 240
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=1.9e-10 Score=94.98 Aligned_cols=177 Identities=16% Similarity=0.205 Sum_probs=125.6
Q ss_pred CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc--ceEEEEecCCce--eEecccceeeeeCCCeEEE
Q 041206 167 SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL--WFCSLSSSNDTR--WNSKEEAAVFEFCGHTTRT 240 (371)
Q Consensus 167 ~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~i 240 (371)
.+..++|++. .++++..|-.|++|+-... +...++... .|+|++|-|-+. ++.| . -+-|.+
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst-----~pt~Lks~sQrnvtclawRPlsaselavg-------C-r~gIci 166 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSST-----CPTKLKSVSQRNVTCLAWRPLSASELAVG-------C-RAGICI 166 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCC-----CCceecchhhcceeEEEeccCCcceeeee-------e-cceeEE
Confidence 5788899998 7889999999999997763 333444333 899999999763 6655 4 455889
Q ss_pred EECCCc----e--------E--EEEeecCCCcEEEEEEc--CCeEEEEe-CCCcEEEEEccCCCCcc----eecceEEEE
Q 041206 241 WNLDNL----E--------C--VQTLKGHSDTVTSLLFW--DEYLFSSS-LDETIKIWLYTHTKNNA----ELSSLFGML 299 (371)
Q Consensus 241 wd~~~~----~--------~--~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~iwd~~~~~~~~----~~~~~~~~~ 299 (371)
|..... . + +....+| .+|+++.|+ +..+++++ .|..|.|||..+..... ....+..+.
T Consensus 167 W~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLk 245 (445)
T KOG2139|consen 167 WSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLK 245 (445)
T ss_pred EEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEE
Confidence 987531 1 1 1122344 689999999 66788777 46789999988776422 234555666
Q ss_pred ecCCCCEEEEecCCCeEEEEEc-CCcceeeeecCCceEEEEEeCCCC--eEEeeCCCCcEE
Q 041206 300 DAEAKPVLFSSGKDSAIRLYEL-PSFKLRARIFSRREVEVDQIGPAG--LFFPGDASGSVG 357 (371)
Q Consensus 300 ~~~~~~~l~~~~~d~~i~iwd~-~~~~~~~~~~~~~~v~~~~~s~~~--~l~~~~~dg~i~ 357 (371)
+++++.+|+++.-|+..++|+. ++.....-....+.|....|+|+| +|++.+..-.++
T Consensus 246 wSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~ly 306 (445)
T KOG2139|consen 246 WSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLY 306 (445)
T ss_pred EcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEE
Confidence 7777779999999999999954 444444444467799999999999 666665544433
No 241
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.31 E-value=2.3e-09 Score=95.91 Aligned_cols=248 Identities=13% Similarity=0.092 Sum_probs=158.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeE-EEeecCCEEEE-ecCCcEEEEEeCCCCee-E----------EEE
Q 041206 107 GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIG-CLISEGSWVFL-GLPNAVKSWRVNAASVN-A----------LVV 173 (371)
Q Consensus 107 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~i~~~~~~~~~v~-~----------~~~ 173 (371)
.+..++.++.+|.|..+|..+|+.+........+. ....++..+++ +.++.+..+|..++.+. . ...
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v 143 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV 143 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE
Confidence 36688889999999999999999988877655432 22234555554 56788888888776331 1 112
Q ss_pred eCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEE--ec---CCceeEecccceeeeeCCCeEEEEECCCceE
Q 041206 174 NNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLS--SS---NDTRWNSKEEAAVFEFCGHTTRTWNLDNLEC 248 (371)
Q Consensus 174 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~--~~---~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~ 248 (371)
..+.++.++.+|.+..||.+++ +.+-.++...+...+. .+ .++.++.+ ..++.+..+|+++++.
T Consensus 144 ~~~~v~v~~~~g~l~a~d~~tG----~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~-------~~~g~v~ald~~tG~~ 212 (377)
T TIGR03300 144 ANGLVVVRTNDGRLTALDAATG----ERLWTYSRVTPALTLRGSASPVIADGGVLVG-------FAGGKLVALDLQTGQP 212 (377)
T ss_pred ECCEEEEECCCCeEEEEEcCCC----ceeeEEccCCCceeecCCCCCEEECCEEEEE-------CCCCEEEEEEccCCCE
Confidence 2347788888999999999988 4444443322111110 01 12445566 8889999999999987
Q ss_pred EEEeecCCC----c------E-EEEEEcCCeEEEEeCCCcEEEEEccCCCCcceec--ceEEEEecCCCCEEEEecCCCe
Q 041206 249 VQTLKGHSD----T------V-TSLLFWDEYLFSSSLDETIKIWLYTHTKNNAELS--SLFGMLDAEAKPVLFSSGKDSA 315 (371)
Q Consensus 249 ~~~~~~~~~----~------v-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~ 315 (371)
+.+...... . + .+..+.++.++.++.+|.++.||.++.+..-... ... .....++ .+++++.+|.
T Consensus 213 ~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~-~p~~~~~-~vyv~~~~G~ 290 (377)
T TIGR03300 213 LWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQ-GPAVDDN-RLYVTDADGV 290 (377)
T ss_pred eeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCcc-CceEeCC-EEEEECCCCe
Confidence 654331100 0 1 1122346788888899999999987665321110 111 0112233 7788889999
Q ss_pred EEEEEcCCcceeeeecC--CceEEEEEeCCCCeEEeeCCCCcEEEEEccccceec
Q 041206 316 IRLYELPSFKLRARIFS--RREVEVDQIGPAGLFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 316 i~iwd~~~~~~~~~~~~--~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
+..+|..+++.+.+... .......... ++.+++++.+|.|+++|..+++...
T Consensus 291 l~~~d~~tG~~~W~~~~~~~~~~ssp~i~-g~~l~~~~~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 291 VVALDRRSGSELWKNDELKYRQLTAPAVV-GGYLVVGDFEGYLHWLSREDGSFVA 344 (377)
T ss_pred EEEEECCCCcEEEccccccCCccccCEEE-CCEEEEEeCCCEEEEEECCCCCEEE
Confidence 99999999988766532 1122222221 2388889999999999998877653
No 242
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.30 E-value=3.4e-10 Score=90.44 Aligned_cols=130 Identities=8% Similarity=0.096 Sum_probs=86.8
Q ss_pred EEEEECCC-ceEEEEeec-CCCcEEEEEEc--CCeEEE--EeCCCcEEEEEccCCCCcc-eecceEEEEecCCCCEEEEe
Q 041206 238 TRTWNLDN-LECVQTLKG-HSDTVTSLLFW--DEYLFS--SSLDETIKIWLYTHTKNNA-ELSSLFGMLDAEAKPVLFSS 310 (371)
Q Consensus 238 i~iwd~~~-~~~~~~~~~-~~~~v~~~~~~--~~~l~s--~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~l~~~ 310 (371)
..+|.++. ......+.- ..++|.+++|+ ++.|+. |..+..|.+||++...... .......+.++|.+++++++
T Consensus 39 ~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~~~~n~i~wsP~G~~l~~~ 118 (194)
T PF08662_consen 39 FELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGTQPRNTISWSPDGRFLVLA 118 (194)
T ss_pred EEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecCCCceEEEECCCCCEEEEE
Confidence 44444422 233444432 34579999999 455543 4567899999987332111 11233445666667688877
Q ss_pred cC---CCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeC------CCCcEEEEEccccceec
Q 041206 311 GK---DSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGD------ASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 311 ~~---d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~------~dg~i~iw~~~~~~~~~ 368 (371)
+. .|.|.+||.++.+.+....+. .++.++|+||| +|+++. .|..++||++....+.+
T Consensus 119 g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~ 185 (194)
T PF08662_consen 119 GFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYK 185 (194)
T ss_pred EccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEe
Confidence 64 467999999998888777654 47899999999 777665 38899999997654443
No 243
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.28 E-value=1e-09 Score=96.34 Aligned_cols=170 Identities=18% Similarity=0.268 Sum_probs=130.5
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCe----eEEEee---------------------cCC-EEEEe-cCCc
Q 041206 105 PSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAE----IGCLIS---------------------EGS-WVFLG-LPNA 157 (371)
Q Consensus 105 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~----~~~~~~---------------------~~~-~~~~~-~~~~ 157 (371)
.|-..++|....||.+|+|+..+++....+..... ..+..+ .+. .++-| ..+.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 34567999999999999999999988777765321 111111 111 23333 4567
Q ss_pred EEEEEeCCC-------------CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce
Q 041206 158 VKSWRVNAA-------------SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR 221 (371)
Q Consensus 158 i~~~~~~~~-------------~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 221 (371)
|.+|+...+ .|.++.++.+ .|.+++.|+.+..|+.... ..+...+..+ .+.+++++||+.
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~----~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK----VIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc----eeeeeeccCCCccceEEEcCCCC
Confidence 777777555 6777777777 8999999999999999998 7888888888 999999999987
Q ss_pred -eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc-------CCeEEEE-eCCCcEEEEEccCCC
Q 041206 222 -WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW-------DEYLFSS-SLDETIKIWLYTHTK 287 (371)
Q Consensus 222 -l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-------~~~l~s~-~~dg~i~iwd~~~~~ 287 (371)
++++ .+.|++||+++++.+..|.+|.++|.+++|- +.+++++ ..+.-+.+|-+....
T Consensus 158 ~l~~a---------s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~ 223 (541)
T KOG4547|consen 158 ILLTA---------SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKED 223 (541)
T ss_pred EEEec---------cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEccc
Confidence 6666 6799999999999999999999999999996 3565554 456678888866643
No 244
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.26 E-value=3.4e-10 Score=92.96 Aligned_cols=249 Identities=16% Similarity=0.141 Sum_probs=166.7
Q ss_pred CCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEE
Q 041206 84 NSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWD-RDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWR 162 (371)
Q Consensus 84 ~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 162 (371)
..+.+++.++||.+.|++...-|..+-+++.+.|.++|||- .+.++.-..+.+..
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~m------------------------ 67 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYM------------------------ 67 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhC------------------------
Confidence 34567889999999999999999888999999999999995 34455444444321
Q ss_pred eCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeE
Q 041206 163 VNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTT 238 (371)
Q Consensus 163 ~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i 238 (371)
..++.++.+.++ .|++|-..|++.-+.+...-+.....+....|. .+..+.|+-... +++. +.|..+
T Consensus 68 --P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~-------~~dk~~ 138 (404)
T KOG1409|consen 68 --PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLST-------GKDKQF 138 (404)
T ss_pred --CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEe-------ccccce
Confidence 225788888887 888888899999887665433335566777788 898888887665 6666 677666
Q ss_pred EEEECCCceEEEEeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCC------CcceecceEEEEecCCCCEEEEecC
Q 041206 239 RTWNLDNLECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTK------NNAELSSLFGMLDAEAKPVLFSSGK 312 (371)
Q Consensus 239 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~ 312 (371)
.---.+.+..+..+.- ...-+++.+.=.+...|...|.|.+-.+.... ..++...+....+.+...++++|..
T Consensus 139 ~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~ 217 (404)
T KOG1409|consen 139 AWHCTESGNRLGGYNF-ETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGAS 217 (404)
T ss_pred EEEeeccCCcccceEe-eccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccc
Confidence 4333333333211110 00111111110133344444444444432222 1334456667777777779999999
Q ss_pred CCeEEEEEcCCcceee--eecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccce
Q 041206 313 DSAIRLYELPSFKLRA--RIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 313 d~~i~iwd~~~~~~~~--~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~ 366 (371)
|..+.+||+...+-.. ...+...|..+...+.- .+.+++.||.|.+|+++..+.
T Consensus 218 d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 218 DHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred cCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 9999999987655333 33367888888877766 999999999999999976543
No 245
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.25 E-value=1.2e-09 Score=87.35 Aligned_cols=107 Identities=19% Similarity=0.279 Sum_probs=76.3
Q ss_pred CCeeEEEEeCC--EE--EEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eEecccceeeeeCCCeEEE
Q 041206 166 ASVNALVVNND--LL--FAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRT 240 (371)
Q Consensus 166 ~~v~~~~~~~~--~l--~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~i 240 (371)
++|.+++|+|+ .+ +.|..++.|.+||++. +.+..+.. ..++.+.|+|+|+ +++++ .+...|.|.+
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~-----~~i~~~~~-~~~n~i~wsP~G~~l~~~g----~~n~~G~l~~ 129 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG-----KKIFSFGT-QPRNTISWSPDGRFLVLAG----FGNLNGDLEF 129 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCcc-----cEeEeecC-CCceEEEECCCCCEEEEEE----ccCCCcEEEE
Confidence 46999999998 43 3345678999999973 55555542 2778999999997 55550 0123578999
Q ss_pred EECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeC------CCcEEEEEcc
Q 041206 241 WNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSL------DETIKIWLYT 284 (371)
Q Consensus 241 wd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~------dg~i~iwd~~ 284 (371)
||.++.+.+..+. |. .+..++|+ +++|+++.. |..++||++.
T Consensus 130 wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 130 WDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 9999988887765 33 46888998 678887764 5556666653
No 246
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=6.7e-11 Score=115.47 Aligned_cols=182 Identities=13% Similarity=0.229 Sum_probs=145.8
Q ss_pred CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc--ceEEEEecCCce-eEecccceeeeeCCCeEEEE
Q 041206 167 SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL--WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTW 241 (371)
Q Consensus 167 ~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iw 241 (371)
.|.++.-+|. +.++|+.||.|++|....+ +.+..++... .|+.+.|+.+|. +..+ ..||.+.+|
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~----~~v~~~rt~g~s~vtr~~f~~qGnk~~i~-------d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHG----QQVVCFRTAGNSRVTRSRFNHQGNKFGIV-------DGDGDLSLW 2278 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCC----CeEEEeeccCcchhhhhhhcccCCceeee-------ccCCceeec
Confidence 5777777777 9999999999999999888 6666666544 899999999884 7777 889999999
Q ss_pred ECCCceEEEEeecCCCcEEEEEEcCCeEEEEe---CCCcEEEEEccCCCC-----cceecceEEEEecCCCCEEEEecCC
Q 041206 242 NLDNLECVQTLKGHSDTVTSLLFWDEYLFSSS---LDETIKIWLYTHTKN-----NAELSSLFGMLDAEAKPVLFSSGKD 313 (371)
Q Consensus 242 d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~d 313 (371)
... .++....+.|........|-+..+++++ .++.+.+||.-.+.. ..+....+.+...|..++|++|+.+
T Consensus 2279 q~~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2279 QAS-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred ccC-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCc
Confidence 988 6777788899999999999988888765 578899999544332 3344555666777777799999999
Q ss_pred CeEEEEEcCCcceeeeecCCceEEEEEeCCCCeEEeeCCCCcEEEEEccccceec
Q 041206 314 SAIRLYELPSFKLRARIFSRREVEVDQIGPAGLFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 314 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
|.|++||++..+++..+.. +....++++|+..|.|+||++....+.+
T Consensus 2358 G~v~l~D~rqrql~h~~~~--------~~~~~~f~~~ss~g~ikIw~~s~~~ll~ 2404 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA--------LDTREYFVTGSSEGNIKIWRLSEFGLLH 2404 (2439)
T ss_pred CcEEEeehHHHHHHHHhhh--------hhhhheeeccCcccceEEEEccccchhh
Confidence 9999999998887776654 4322299999999999999998765443
No 247
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.23 E-value=2.8e-08 Score=87.52 Aligned_cols=181 Identities=18% Similarity=0.151 Sum_probs=113.8
Q ss_pred CEE-EEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCC
Q 041206 109 NKL-YSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGG 185 (371)
Q Consensus 109 ~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg 185 (371)
+++ ++-..++.|.+.|..+.+.+.++...... -..+.++++ ++++++.||
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~---------------------------h~~~~~s~Dgr~~yv~~rdg 58 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAP---------------------------HAGLKFSPDGRYLYVANRDG 58 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTE---------------------------EEEEE-TT-SSEEEEEETTS
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCc---------------------------eeEEEecCCCCEEEEEcCCC
Confidence 344 45567899999999999999998854321 234567775 788889999
Q ss_pred eEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-e-EecccceeeeeCCCeEEEEECCCceEEEEeecC-------C
Q 041206 186 VISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-W-NSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGH-------S 256 (371)
Q Consensus 186 ~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l-~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~-------~ 256 (371)
.|.++|+.+. +.+.+++......++++++||+ + ++. ...+.+.++|.++.++++.+... .
T Consensus 59 ~vsviD~~~~----~~v~~i~~G~~~~~i~~s~DG~~~~v~n-------~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~ 127 (369)
T PF02239_consen 59 TVSVIDLATG----KVVATIKVGGNPRGIAVSPDGKYVYVAN-------YEPGTVSVIDAETLEPVKTIPTGGMPVDGPE 127 (369)
T ss_dssp EEEEEETTSS----SEEEEEE-SSEEEEEEE--TTTEEEEEE-------EETTEEEEEETTT--EEEEEE--EE-TTTS-
T ss_pred eEEEEECCcc----cEEEEEecCCCcceEEEcCCCCEEEEEe-------cCCCceeEeccccccceeecccccccccccC
Confidence 9999999999 8888888777778899999997 4 344 67899999999999999887643 2
Q ss_pred CcEEEEEEc--CC-eEEEEeCCCcEEEEEccCCCCcce--e---cceEEEEecCCCCEE-EEecCCCeEEEEEcCCccee
Q 041206 257 DTVTSLLFW--DE-YLFSSSLDETIKIWLYTHTKNNAE--L---SSLFGMLDAEAKPVL-FSSGKDSAIRLYELPSFKLR 327 (371)
Q Consensus 257 ~~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~--~---~~~~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~ 327 (371)
..+.++..+ .. ++++--..+.|-+-|+........ + .......+.++++++ ++....+.|-++|..+++.+
T Consensus 128 ~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v 207 (369)
T PF02239_consen 128 SRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV 207 (369)
T ss_dssp --EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE
T ss_pred CCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEE
Confidence 345566554 33 444555557777777665432110 0 112223444444454 44455667888887775443
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.22 E-value=7.1e-09 Score=94.19 Aligned_cols=159 Identities=15% Similarity=0.018 Sum_probs=104.8
Q ss_pred eeeEeeeCccCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEe
Q 041206 87 ATLMKLNGHKKAVTNVGLPSGSNKLYSGSRD---GRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRV 163 (371)
Q Consensus 87 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 163 (371)
...+.+..+...+...+|+||+++|+.++.+ ..|++||+.+++........
T Consensus 180 ~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~-------------------------- 233 (417)
T TIGR02800 180 ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFP-------------------------- 233 (417)
T ss_pred CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC--------------------------
Confidence 3345566677789999999999999887654 47999999988654332221
Q ss_pred CCCCeeEEEEeCC--EE-EEEeCCC--eEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeC-C
Q 041206 164 NAASVNALVVNND--LL-FAGSEGG--VISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFC-G 235 (371)
Q Consensus 164 ~~~~v~~~~~~~~--~l-~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~-d 235 (371)
+.+.+.+|+|+ .| ++.+.++ .|++||+.++ . ...+..+. ......|+||++ ++.. +. +
T Consensus 234 --~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~----~-~~~l~~~~~~~~~~~~s~dg~~l~~~-------s~~~ 299 (417)
T TIGR02800 234 --GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK----Q-LTRLTNGPGIDTEPSWSPDGKSIAFT-------SDRG 299 (417)
T ss_pred --CCccceEECCCCCEEEEEECCCCCccEEEEECCCC----C-EEECCCCCCCCCCEEECCCCCEEEEE-------ECCC
Confidence 12455778877 34 3444444 5888888875 2 23333344 455678999986 5444 32 2
Q ss_pred --CeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCC---cEEEEEccCC
Q 041206 236 --HTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDE---TIKIWLYTHT 286 (371)
Q Consensus 236 --g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg---~i~iwd~~~~ 286 (371)
..|+++|+.+++.. .+..+...+....|+ +++++.++.++ .|.+||+...
T Consensus 300 g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 300 GSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred CCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC
Confidence 36888898876643 444455566777887 67787777665 7888887653
No 249
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=1.5e-08 Score=91.84 Aligned_cols=185 Identities=12% Similarity=-0.016 Sum_probs=108.9
Q ss_pred CeeEEEEeCC--EEEEEe---CCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eE-ecccceeeeeCCC--e
Q 041206 167 SVNALVVNND--LLFAGS---EGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WN-SKEEAAVFEFCGH--T 237 (371)
Q Consensus 167 ~v~~~~~~~~--~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~~~~~~~~dg--~ 237 (371)
.+.+.+|+|+ .|+..+ .+..+.+|++.++.. +.+..+.+ .+...+|+|||+ ++ +. +.+| .
T Consensus 200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~--~~~~~~~SPDG~~La~~~-------~~~g~~~ 268 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPR--HNGAPAFSPDGSKLAFAL-------SKTGSLN 268 (429)
T ss_pred ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCC--CcCCeEECCCCCEEEEEE-------cCCCCcE
Confidence 4778899988 555433 245799999987621 22222222 455689999996 44 33 3343 6
Q ss_pred EEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeC-CCcEEEE--EccCCCCccee---cceEEEEecCCCCEEEE
Q 041206 238 TRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSL-DETIKIW--LYTHTKNNAEL---SSLFGMLDAEAKPVLFS 309 (371)
Q Consensus 238 i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg~i~iw--d~~~~~~~~~~---~~~~~~~~~~~~~~l~~ 309 (371)
|++||+.+++..+ +..+...+....|+ ++.|+..+. ++...+| |+......... .......+.+++++++.
T Consensus 269 I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~ 347 (429)
T PRK03629 269 LYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVM 347 (429)
T ss_pred EEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEE
Confidence 9999999877654 33344567788898 566766654 4555555 44433221110 01112233444446655
Q ss_pred ec-CC--CeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCCCCc---EEEEEcccc
Q 041206 310 SG-KD--SAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDASGS---VGVWKWLLA 364 (371)
Q Consensus 310 ~~-~d--~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~---i~iw~~~~~ 364 (371)
.+ .+ ..|.+||+.+++.. .+..........|+||| .|+..+.++. +.++++...
T Consensus 348 ~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 348 VSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred EEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 43 33 35888999887643 23222234567899999 7777776654 677777543
No 250
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=1.6e-08 Score=92.08 Aligned_cols=186 Identities=10% Similarity=-0.091 Sum_probs=113.4
Q ss_pred CeeEEEEeCC--EEEEEeC---CCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-e-EecccceeeeeCCC--
Q 041206 167 SVNALVVNND--LLFAGSE---GGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-W-NSKEEAAVFEFCGH-- 236 (371)
Q Consensus 167 ~v~~~~~~~~--~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l-~~~~~~~~~~~~dg-- 236 (371)
.+.+.+|+|+ .|+..+. +..|.+||+.++ +. ..+..+. .+...+|+|||+ + ++. +.++
T Consensus 203 ~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g----~~-~~l~~~~g~~~~~~~SPDG~~la~~~-------~~~g~~ 270 (435)
T PRK05137 203 LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG----QR-ELVGNFPGMTFAPRFSPDGRKVVMSL-------SQGGNT 270 (435)
T ss_pred CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC----cE-EEeecCCCcccCcEECCCCCEEEEEE-------ecCCCc
Confidence 5788899988 5555543 468999999876 32 2344444 677889999996 4 344 4444
Q ss_pred eEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeC-CC--cEEEEEccCCCCccee---cceEEEEecCCCCEEE
Q 041206 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSL-DE--TIKIWLYTHTKNNAEL---SSLFGMLDAEAKPVLF 308 (371)
Q Consensus 237 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg--~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~l~ 308 (371)
.|++||+.+++. ..+..+........|+ ++.|+..+. +| .|.++|+......... .......+.++++.|+
T Consensus 271 ~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 271 DIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIA 349 (435)
T ss_pred eEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEE
Confidence 488889988765 4455566666778888 567766553 33 5777776544321111 1122223444444665
Q ss_pred EecCC---CeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEe-eCCC-----CcEEEEEccccce
Q 041206 309 SSGKD---SAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFP-GDAS-----GSVGVWKWLLAEQ 366 (371)
Q Consensus 309 ~~~~d---~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~-~~~d-----g~i~iw~~~~~~~ 366 (371)
....+ ..|.+||+..+.. ..+.....+....|+||| .|+. .... ..+.++++..+..
T Consensus 350 ~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 350 FTKQGGGQFSIGVMKPDGSGE-RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred EEEcCCCceEEEEEECCCCce-EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 54432 3688889865443 333333456788999999 5444 3322 2577778765543
No 251
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=6.6e-09 Score=94.44 Aligned_cols=185 Identities=12% Similarity=-0.045 Sum_probs=110.6
Q ss_pred CeeEEEEeCC--EEEEEeC---CCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-e-EecccceeeeeCCC--
Q 041206 167 SVNALVVNND--LLFAGSE---GGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-W-NSKEEAAVFEFCGH-- 236 (371)
Q Consensus 167 ~v~~~~~~~~--~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l-~~~~~~~~~~~~dg-- 236 (371)
.+.+.+|+|+ .|+..+. ...|++||+.++ +. ..+.... ...+..|+|||+ + ++. +.+|
T Consensus 205 ~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g----~~-~~l~~~~g~~~~~~~SpDG~~l~~~~-------s~~g~~ 272 (433)
T PRK04922 205 PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATG----QR-ELVASFRGINGAPSFSPDGRRLALTL-------SRDGNP 272 (433)
T ss_pred ccccccCCCCCCEEEEEecCCCCcEEEEEECCCC----CE-EEeccCCCCccCceECCCCCEEEEEE-------eCCCCc
Confidence 4777888888 6666553 346999999876 22 2222333 455789999996 4 344 4444
Q ss_pred eEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEe-CCCc--EEEEEccCCCCccee---cceEEEEecCCCCEEE
Q 041206 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSS-LDET--IKIWLYTHTKNNAEL---SSLFGMLDAEAKPVLF 308 (371)
Q Consensus 237 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~--i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~l~ 308 (371)
.|++||+.+++.. .+..+.......+|+ +++|+..+ .+|. |.++++...+..... .......++++++.++
T Consensus 273 ~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 273 EIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIA 351 (433)
T ss_pred eEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence 6999999987754 455555555678888 56776655 4455 555565443321110 0111223344444666
Q ss_pred EecCC-C--eEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCC---CCcEEEEEccccc
Q 041206 309 SSGKD-S--AIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDA---SGSVGVWKWLLAE 365 (371)
Q Consensus 309 ~~~~d-~--~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~---dg~i~iw~~~~~~ 365 (371)
..+.+ + .|.+||+.+++.. .+.+........|+||| .++..+. .+.|.++++....
T Consensus 352 ~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 352 MVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred EEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 54333 2 6999999887654 33333345567999999 5554443 2357777775543
No 252
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=4.3e-08 Score=85.87 Aligned_cols=305 Identities=11% Similarity=0.055 Sum_probs=180.8
Q ss_pred cccCCCCceeeccCcccc------cceeEEEEEeeccceeeeeeeecceeeccceeeC------CccceEEEEEeccCCC
Q 041206 13 HKHSEGGETMMSDDDDLM------KGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYG------DKCRFLHSWVHSVDGD 80 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d~~------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~ 80 (371)
..+|++|+++|-...+.. .+. ..+......+..+.++|+..++....-.+ .....+.+|+
T Consensus 40 ~~~S~~G~lfA~~~~~~v~i~~~~~~~--~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~------ 111 (566)
T KOG2315|consen 40 FAYSNNGRLFAYSDNQVVKVFEIATLK--VVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN------ 111 (566)
T ss_pred EEEcCCCcEEEEEcCCeEEEEEccCCc--EEEEeccceeeeeeecccccccccccccccccCCCCCCCceeeee------
Confidence 457999999987766522 222 22222333777888999887654221111 1123455666
Q ss_pred CccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEe--e--cCCEEEE----
Q 041206 81 NTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLI--S--EGSWVFL---- 152 (371)
Q Consensus 81 ~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~---- 152 (371)
... ......++.-...=.+..|++|..+.|= -..+.+.+|+....+....--+...+..+. + ....+++
T Consensus 112 -vet-~~~~s~~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 112 -VET-GVQRSQIQKKMQNGWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred -ecc-ceehhheehhhhcCcccccccchhhhhh-hhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccC
Confidence 222 3333333322222258889988754332 234669999988755443333334444443 2 2345554
Q ss_pred --ecCCcEEEEEeCCC--------------CeeEEEEeCC---EEEEEe--CC---------CeEEEEeccCCCCcceee
Q 041206 153 --GLPNAVKSWRVNAA--------------SVNALVVNND---LLFAGS--EG---------GVISVWKGTFVANPFKQV 202 (371)
Q Consensus 153 --~~~~~i~~~~~~~~--------------~v~~~~~~~~---~l~~~~--~d---------g~v~iwd~~~~~~~~~~~ 202 (371)
|.-..+++|..... .-..+.|++. +|+.++ -| .+++++++... ...
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~----s~~ 264 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE----SVS 264 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc----eEE
Confidence 33467888887633 2344666654 333332 23 35777777743 455
Q ss_pred EEEecCcceEEEEecCCce---eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeC---
Q 041206 203 ASIRAPLWFCSLSSSNDTR---WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSL--- 274 (371)
Q Consensus 203 ~~~~~~~~v~~~~~~~~~~---l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~--- 274 (371)
..+....+|.++.|+|+++ ++-| ..-..+.|+|++ ++++..+. .++=+++-|+ +++++.++-
T Consensus 265 V~L~k~GPVhdv~W~~s~~EF~VvyG-------fMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL 334 (566)
T KOG2315|consen 265 VPLLKEGPVHDVTWSPSGREFAVVYG-------FMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNL 334 (566)
T ss_pred EecCCCCCceEEEECCCCCEEEEEEe-------cccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCC
Confidence 5555555999999999995 4455 777899999998 56666553 5677788898 788887775
Q ss_pred CCcEEEEEccCCCCccee--cceEEEEecCCCCEEEEecC------CCeEEEEEcCCcceeeeecCCceEEEEEeCC
Q 041206 275 DETIKIWLYTHTKNNAEL--SSLFGMLDAEAKPVLFSSGK------DSAIRLYELPSFKLRARIFSRREVEVDQIGP 343 (371)
Q Consensus 275 dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~ 343 (371)
.|.+.+||+...+..... ...+.+.+.+++.+|+++.. |+.++||+... +++.+..-......+.|-|
T Consensus 335 ~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG-~~l~~~~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 335 PGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG-SLLHEKMFKSELLQVEWRP 410 (566)
T ss_pred CCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC-ceeehhhhhHhHhheeeee
Confidence 578999998886653332 12223355666668888764 67899999864 4333322222566666665
No 253
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.19 E-value=4.8e-09 Score=86.34 Aligned_cols=215 Identities=13% Similarity=0.211 Sum_probs=130.9
Q ss_pred CCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceEE-EE--eCC---CeeEEEe-----ecCCEEEEecCCcEEEE-E
Q 041206 97 KAVTNVGLPSGS--NKLYSGSRDGRVSVWDRDSGRCVN-VI--TNG---AEIGCLI-----SEGSWVFLGLPNAVKSW-R 162 (371)
Q Consensus 97 ~~V~~~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~-~~--~~~---~~~~~~~-----~~~~~~~~~~~~~i~~~-~ 162 (371)
..|..+.|.+++ ..++....|.+|++|.+....... .. +.. ..+..+. +....+.+ ...++| +
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea---~prRv~aN 161 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEA---SPRRVYAN 161 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeee---eeeeeccc
Confidence 568899998855 457777889999999986443221 00 101 1111111 01111111 011222 3
Q ss_pred eCCCCeeEEEEeCC-EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc------ceEEEEecCCc--eeEecccceeeee
Q 041206 163 VNAASVNALVVNND-LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL------WFCSLSSSNDT--RWNSKEEAAVFEF 233 (371)
Q Consensus 163 ~~~~~v~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~--~l~~~~~~~~~~~ 233 (371)
.|+--|+++.++.+ ..+....|=.|.+|+++-..+.+..+- ++.++ -|++..|+|.. .++-. +
T Consensus 162 aHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVD-IKP~nmEeLteVITsaEFhp~~cn~f~YS-------S 233 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVD-IKPANMEELTEVITSAEFHPHHCNVFVYS-------S 233 (433)
T ss_pred cceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEE-ccccCHHHHHHHHhhhccCHhHccEEEEe-------c
Confidence 45667999999988 444555688999999987654444332 22222 58899999965 36666 8
Q ss_pred CCCeEEEEECCCceE----EEEe------------ecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC-------
Q 041206 234 CGHTTRTWNLDNLEC----VQTL------------KGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN------- 288 (371)
Q Consensus 234 ~dg~i~iwd~~~~~~----~~~~------------~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~------- 288 (371)
..|+|++-|++...+ -+.+ ..--..|..+.|+ |+|+++-.. -+|++||+.....
T Consensus 234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~v 312 (433)
T KOG1354|consen 234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPV 312 (433)
T ss_pred CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEee
Confidence 899999999994221 0111 1122467888998 678887543 5799999754332
Q ss_pred --------------cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCc
Q 041206 289 --------------NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSF 324 (371)
Q Consensus 289 --------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 324 (371)
........+.++. +..++++|+..+.+++|+...+
T Consensus 313 h~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 313 HEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred hHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCCCC
Confidence 1112223333444 4449999999999999995543
No 254
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.6e-09 Score=89.62 Aligned_cols=245 Identities=13% Similarity=0.142 Sum_probs=149.4
Q ss_pred cCCceeeEeeeCccCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEE
Q 041206 83 TNSLATLMKLNGHKKAVTNVGLPSGSN-KLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSW 161 (371)
Q Consensus 83 ~~~~~~~~~l~~h~~~V~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 161 (371)
..+++....+.+|...|..++|+|..+ ++..++.+.+|+|.|+++..++..+....
T Consensus 180 ~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~----------------------- 236 (463)
T KOG1645|consen 180 SHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN----------------------- 236 (463)
T ss_pred cCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccC-----------------------
Confidence 445666778889999999999999766 78889999999999999998888777554
Q ss_pred EeCCCCeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecC---cceEEEEecCCceeEecccceeeeeCC
Q 041206 162 RVNAASVNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAP---LWFCSLSSSNDTRWNSKEEAAVFEFCG 235 (371)
Q Consensus 162 ~~~~~~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~l~~~~~~~~~~~~d 235 (371)
.+++++|+-+ ++..|-..|.|.|||++.... ++..+... .+|..++.-+-+.++..+..++.+..+
T Consensus 237 -----~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~---~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~ 308 (463)
T KOG1645|consen 237 -----QIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG---PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV 308 (463)
T ss_pred -----CceeeeeccCCcceeEEeccCceEEEEEccCCCc---hHhhhhhhhccCcceeecccCccccccccceEEeeehh
Confidence 3888888766 899999999999999998753 33333331 156665554433322221222111222
Q ss_pred CeEEEEECC----CceEEEEeecCCCcEEEEEEc---CCeEEEEeC-----------------CCcEEEEEccCCC---C
Q 041206 236 HTTRTWNLD----NLECVQTLKGHSDTVTSLLFW---DEYLFSSSL-----------------DETIKIWLYTHTK---N 288 (371)
Q Consensus 236 g~i~iwd~~----~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~-----------------dg~i~iwd~~~~~---~ 288 (371)
+..|.+. ...++..+. ..+...++++. +..|++.-. || --||..+..- .
T Consensus 309 --l~f~ei~~s~~~~p~vlele-~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG-~pVc~~r~~~~Gs~ 384 (463)
T KOG1645|consen 309 --LQFYEIVFSAECLPCVLELE-PPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDG-FPVCGKRRTYFGSK 384 (463)
T ss_pred --hhhhhhhccccCCCcccccC-CCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccC-ceeeeecccccCCc
Confidence 3344442 111222222 23445555555 233444333 22 1222211110 1
Q ss_pred cceecceEEEEecCCCCE-EEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCC-CC--eEEeeCCCCcEEEEEccc
Q 041206 289 NAELSSLFGMLDAEAKPV-LFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGP-AG--LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~-~~--~l~~~~~dg~i~iw~~~~ 363 (371)
......-.....+++.++ +..+..-+.+.+||+.+++.++.+....+|.++.... ++ +|++- .|..++||..+.
T Consensus 385 ~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~es 462 (463)
T KOG1645|consen 385 QTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALL-TDDRVHIYKNES 462 (463)
T ss_pred ccccccccceeccccccEEEEecCCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhe-ecceEEEEecCC
Confidence 111111111222333334 4466677899999999999999999889999988765 34 55555 566899988754
No 255
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=8.1e-08 Score=84.10 Aligned_cols=275 Identities=8% Similarity=0.080 Sum_probs=162.3
Q ss_pred cCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCceEEEEeCC--C----eeEEEee
Q 041206 83 TNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSR-----------DGRVSVWDRDSGRCVNVITNG--A----EIGCLIS 145 (371)
Q Consensus 83 ~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~-----------dg~v~iwd~~~~~~~~~~~~~--~----~~~~~~~ 145 (371)
..+...++.+. |. .|.-+.|||+.+||+|-+. ...++|||+.+|...+.+... . ++.-.++
T Consensus 238 G~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~ 315 (698)
T KOG2314|consen 238 GESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH 315 (698)
T ss_pred CccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEecc
Confidence 44555555554 54 4889999999999999653 157999999999999888762 1 2334456
Q ss_pred cCCEEEEecCCcEEEEEeCCC-----------CeeEEEEeCC--EEEEEeC-----CCeEEEEeccCCCCcceeeEEEec
Q 041206 146 EGSWVFLGLPNAVKSWRVNAA-----------SVNALVVNND--LLFAGSE-----GGVISVWKGTFVANPFKQVASIRA 207 (371)
Q Consensus 146 ~~~~~~~~~~~~i~~~~~~~~-----------~v~~~~~~~~--~l~~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~ 207 (371)
++++++.-..+.|.+|+..+- .|..+.|+|. .||--+. -..+.+..+.+. +.+++-.-
T Consensus 316 DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~----~~iRt~nl 391 (698)
T KOG2314|consen 316 DDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSK----REIRTKNL 391 (698)
T ss_pred CCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCcc----ceeeeccc
Confidence 899998877788888876544 6777888887 3322211 123444444433 33333333
Q ss_pred Cc-ceEEEEecCCceeEec-c---cceeeeeCCCeEEEEECCCceE-EEEeecCCCcEEEEEEc--CCeEEEEeC---CC
Q 041206 208 PL-WFCSLSSSNDTRWNSK-E---EAAVFEFCGHTTRTWNLDNLEC-VQTLKGHSDTVTSLLFW--DEYLFSSSL---DE 276 (371)
Q Consensus 208 ~~-~v~~~~~~~~~~l~~~-~---~~~~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~~---dg 276 (371)
++ .=..+-|-.+|..++- - ...-+.+.-..+.|+.++.... +.... -...|...+|. |+.+++-+. ..
T Consensus 392 fnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~ 470 (698)
T KOG2314|consen 392 FNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKN 470 (698)
T ss_pred eeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEcccccc
Confidence 33 3344556666653322 0 0000002222455666654332 22222 45677777777 555554432 35
Q ss_pred cEEEEEccCCCC-ccee-----cceEEEEecCCCCEEEEe---cCCCeEEEEEcCCcceeeee-cCCceEEEEEeCCCC-
Q 041206 277 TIKIWLYTHTKN-NAEL-----SSLFGMLDAEAKPVLFSS---GKDSAIRLYELPSFKLRARI-FSRREVEVDQIGPAG- 345 (371)
Q Consensus 277 ~i~iwd~~~~~~-~~~~-----~~~~~~~~~~~~~~l~~~---~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~- 345 (371)
++.+|.+.+... ...+ .....++++|.+++++.+ |..|.+.++|+........- ..+...+.+.|.|.|
T Consensus 471 tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGR 550 (698)
T KOG2314|consen 471 TVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGR 550 (698)
T ss_pred ceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCC
Confidence 789998774322 1111 123344566666577665 45789999998852222111 124456789999999
Q ss_pred eEEeeCC------CCcEEEEEcccc
Q 041206 346 LFFPGDA------SGSVGVWKWLLA 364 (371)
Q Consensus 346 ~l~~~~~------dg~i~iw~~~~~ 364 (371)
+++|++. |.--++|++...
T Consensus 551 YvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 551 YVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred EEEEeeehhhhccccceEEEEeecH
Confidence 8888875 455677777643
No 256
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=3.1e-08 Score=90.12 Aligned_cols=214 Identities=14% Similarity=-0.007 Sum_probs=121.0
Q ss_pred EeeeCccCCeEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCC
Q 041206 90 MKLNGHKKAVTNVGLPSGSNKLYSGSRD-G--RVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAA 166 (371)
Q Consensus 90 ~~l~~h~~~V~~~~~~~~~~~l~s~~~d-g--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 166 (371)
+.+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++........ +
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~----------------------------g 262 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP----------------------------G 262 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC----------------------------C
Confidence 4455567788999999999998876543 3 5888899887653322111 1
Q ss_pred CeeEEEEeCC--EE-EEEeCCCe--EEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCC--Ce
Q 041206 167 SVNALVVNND--LL-FAGSEGGV--ISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCG--HT 237 (371)
Q Consensus 167 ~v~~~~~~~~--~l-~~~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~d--g~ 237 (371)
......|+|+ .| ++.+.+|. |+++|+.++ + ...+..+. .....+|+||++ ++... ..+ ..
T Consensus 263 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg----~-~~~lt~~~~~~~~p~wSpDG~~I~f~s------~~~g~~~ 331 (448)
T PRK04792 263 INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK----A-LTRITRHRAIDTEPSWHPDGKSLIFTS------ERGGKPQ 331 (448)
T ss_pred CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC----C-eEECccCCCCccceEECCCCCEEEEEE------CCCCCce
Confidence 1335678887 34 44556664 777788765 2 23334444 567789999996 44330 223 35
Q ss_pred EEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeC-CCc--EEEEEccCCCCccee---cceEEEEecCCCCEEEE
Q 041206 238 TRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSL-DET--IKIWLYTHTKNNAEL---SSLFGMLDAEAKPVLFS 309 (371)
Q Consensus 238 i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg~--i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~l~~ 309 (371)
|+++|+.+++... +..........+|+ +++|+..+. ++. |.++|+......... ......+.+++..++++
T Consensus 332 Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~ 410 (448)
T PRK04792 332 IYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYS 410 (448)
T ss_pred EEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEE
Confidence 7778888776543 22122223345677 566665544 444 445565544321100 01111355555534444
Q ss_pred ecCCC--eEEEEEcCCcceeeeec-CCceEEEEEeCCC
Q 041206 310 SGKDS--AIRLYELPSFKLRARIF-SRREVEVDQIGPA 344 (371)
Q Consensus 310 ~~~d~--~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~ 344 (371)
...++ .+++++.. +.....+. ..+.+...+|+|-
T Consensus 411 ~~~~g~~~l~~~~~~-G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 411 TTYQGKQVLAAVSID-GRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred EecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 44444 36777764 44444444 3456777788873
No 257
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.13 E-value=2e-07 Score=83.85 Aligned_cols=244 Identities=10% Similarity=0.026 Sum_probs=151.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEE--EeecCCEEEEecCCcEEEEEeCCCCee-EE------------
Q 041206 107 GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGC--LISEGSWVFLGLPNAVKSWRVNAASVN-AL------------ 171 (371)
Q Consensus 107 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~v~-~~------------ 171 (371)
++..++.++.+|.+..+|.++|+.+.+......+.+ +..++..++...++.+..+|..++.+. ..
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~ 198 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE 198 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence 356777888899999999999999888876554332 123444444556778888888777321 11
Q ss_pred ---EEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEe-c-Cc--ceEEEEecC---CceeEecccceeeeeCCCeEEEE
Q 041206 172 ---VVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIR-A-PL--WFCSLSSSN---DTRWNSKEEAAVFEFCGHTTRTW 241 (371)
Q Consensus 172 ---~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~-~~--~v~~~~~~~---~~~l~~~~~~~~~~~~dg~i~iw 241 (371)
....+.++.++.+|.+..+|..++...++...... + .. ....+..+| ++.++.+ +.+|.+..+
T Consensus 199 ~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~-------~~~g~l~al 271 (394)
T PRK11138 199 SAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYAL-------AYNGNLVAL 271 (394)
T ss_pred CCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEE-------EcCCeEEEE
Confidence 11223677788899999999988843222110000 0 00 011111222 4556666 889999999
Q ss_pred ECCCceEEEEeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCCccee----cceEEEEecCCCCEEEEecCCCeEE
Q 041206 242 NLDNLECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKNNAEL----SSLFGMLDAEAKPVLFSSGKDSAIR 317 (371)
Q Consensus 242 d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~d~~i~ 317 (371)
|..+++.+..... .....+...++.++.++.+|.+..+|....+..-.. ..........++ .++.++.+|.++
T Consensus 272 d~~tG~~~W~~~~--~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g-~l~v~~~~G~l~ 348 (394)
T PRK11138 272 DLRSGQIVWKREY--GSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNG-YLVVGDSEGYLH 348 (394)
T ss_pred ECCCCCEEEeecC--CCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECC-EEEEEeCCCEEE
Confidence 9999988755432 122234455778888889999999998765431100 001100111233 788899999999
Q ss_pred EEEcCCcceeeeecC-CceEEE-EEeCCCCeEEeeCCCCcEEEEEc
Q 041206 318 LYELPSFKLRARIFS-RREVEV-DQIGPAGLFFPGDASGSVGVWKW 361 (371)
Q Consensus 318 iwd~~~~~~~~~~~~-~~~v~~-~~~s~~~~l~~~~~dg~i~iw~~ 361 (371)
..|..+++.+.+... ...+.+ -.+ .++.|+.++.||.|+.++.
T Consensus 349 ~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 349 WINREDGRFVAQQKVDSSGFLSEPVV-ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEECCCCCEEEEEEcCCCcceeCCEE-ECCEEEEEeCCceEEEEeC
Confidence 999999998887653 222322 122 2448888899999988764
No 258
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.12 E-value=1.8e-07 Score=78.00 Aligned_cols=214 Identities=12% Similarity=0.040 Sum_probs=136.9
Q ss_pred CCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEE-eCCEEEEEeCCCeEEEEeccCC
Q 041206 117 DGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVV-NNDLLFAGSEGGVISVWKGTFV 195 (371)
Q Consensus 117 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~-~~~~l~~~~~dg~v~iwd~~~~ 195 (371)
+|+|..||..+|+.+......... ....+... ....+++++.++.+..||..++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG 56 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGI-------------------------GGPVATAVPDGGRVYVASGDGNLYALDAKTG 56 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSC-------------------------SSEEETEEEETTEEEEEETTSEEEEEETTTS
T ss_pred CCEEEEEECCCCCEEEEEECCCCC-------------------------CCccceEEEeCCEEEEEcCCCEEEEEECCCC
Confidence 688999999999998887652210 11222233 5557788889999999999998
Q ss_pred CCcceeeEEEecCcceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEe-ecCC-----CcEEEEEEcCCeE
Q 041206 196 ANPFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTL-KGHS-----DTVTSLLFWDEYL 269 (371)
Q Consensus 196 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~-~~~~-----~~v~~~~~~~~~l 269 (371)
+.+-.......+.......++.++.+ +.++.++.+|..+|+.+... .... .......+.++.+
T Consensus 57 ----~~~W~~~~~~~~~~~~~~~~~~v~v~-------~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (238)
T PF13360_consen 57 ----KVLWRFDLPGPISGAPVVDGGRVYVG-------TSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRL 125 (238)
T ss_dssp ----EEEEEEECSSCGGSGEEEETTEEEEE-------ETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEE
T ss_pred ----CEEEEeeccccccceeeecccccccc-------cceeeeEecccCCcceeeeeccccccccccccccCceEecCEE
Confidence 66655554332211123334566666 78889999999999998874 3221 1223344447888
Q ss_pred EEEeCCCcEEEEEccCCCCc--------c------eecceEEEEecCCCCEEEEecCCCe-EEEEEcCCcceeeeecCCc
Q 041206 270 FSSSLDETIKIWLYTHTKNN--------A------ELSSLFGMLDAEAKPVLFSSGKDSA-IRLYELPSFKLRARIFSRR 334 (371)
Q Consensus 270 ~s~~~dg~i~iwd~~~~~~~--------~------~~~~~~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~ 334 (371)
+.+..++.|..+|+++++.. . ............++ .++.++.++. +.+ |+.+++.+.+.. ..
T Consensus 126 ~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~ 202 (238)
T PF13360_consen 126 YVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-IS 202 (238)
T ss_dssp EEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS
T ss_pred EEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CC
Confidence 88888999999997765531 0 01112222333344 6666777775 555 999998765444 33
Q ss_pred eEEEEEeCCCCeEEeeCCCCcEEEEEccccceecc
Q 041206 335 EVEVDQIGPAGLFFPGDASGSVGVWKWLLAEQQKM 369 (371)
Q Consensus 335 ~v~~~~~s~~~~l~~~~~dg~i~iw~~~~~~~~~~ 369 (371)
.+..+....++.|+.++.++.|..||+.+++..++
T Consensus 203 ~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 203 GIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp -ECECEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CccCCceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 34442233334666666899999999999988764
No 259
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=7e-08 Score=87.93 Aligned_cols=215 Identities=13% Similarity=0.018 Sum_probs=124.1
Q ss_pred eeeEeeeCccCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEe
Q 041206 87 ATLMKLNGHKKAVTNVGLPSGSNKLYSGSRD---GRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRV 163 (371)
Q Consensus 87 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 163 (371)
...+.+..+...+...+|+|||+.|+..+.+ ..|.+||+.+++........
T Consensus 189 ~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~-------------------------- 242 (430)
T PRK00178 189 ARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE-------------------------- 242 (430)
T ss_pred CCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC--------------------------
Confidence 3345566677889999999999998876643 36899999888654432211
Q ss_pred CCCCeeEEEEeCC--EEE-EEeCCC--eEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCC-
Q 041206 164 NAASVNALVVNND--LLF-AGSEGG--VISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCG- 235 (371)
Q Consensus 164 ~~~~v~~~~~~~~--~l~-~~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~d- 235 (371)
+.+....|+|+ .++ +...+| .|++||+.++ + ...+..+. ......|+||++ ++... ..+
T Consensus 243 --g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~----~-~~~lt~~~~~~~~~~~spDg~~i~f~s------~~~g 309 (430)
T PRK00178 243 --GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR----Q-LSRVTNHPAIDTEPFWGKDGRTLYFTS------DRGG 309 (430)
T ss_pred --CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC----C-eEEcccCCCCcCCeEECCCCCEEEEEE------CCCC
Confidence 12345678877 444 444454 6888898876 2 22344444 566788999986 54430 233
Q ss_pred -CeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeC-CC--cEEEEEccCCCCccee---cceEEEEecCCCCE
Q 041206 236 -HTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSL-DE--TIKIWLYTHTKNNAEL---SSLFGMLDAEAKPV 306 (371)
Q Consensus 236 -g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg--~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~ 306 (371)
..|+++|+.+++... +...........|+ +++++..+. ++ .|.+||+...+..... ......+++++. .
T Consensus 310 ~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~-~ 387 (430)
T PRK00178 310 KPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGT-M 387 (430)
T ss_pred CceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCC-E
Confidence 368888888776533 22112223345666 567766554 33 4778887665421100 011223455554 5
Q ss_pred EEEec-CC--CeEEEEEcCCcceeeeec-CCceEEEEEeCC
Q 041206 307 LFSSG-KD--SAIRLYELPSFKLRARIF-SRREVEVDQIGP 343 (371)
Q Consensus 307 l~~~~-~d--~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~ 343 (371)
++..+ .+ ..+.++++.... ...+. ..+.+...+|+|
T Consensus 388 i~~~~~~~g~~~l~~~~~~g~~-~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 388 LIYATRQQGRGVLMLVSINGRV-RLPLPTAQGEVREPSWSP 427 (430)
T ss_pred EEEEEecCCceEEEEEECCCCc-eEECcCCCCCcCCCccCC
Confidence 55443 33 346677775433 22333 345566777776
No 260
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.12 E-value=3.3e-10 Score=64.96 Aligned_cols=39 Identities=31% Similarity=0.592 Sum_probs=37.2
Q ss_pred ceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 041206 86 LATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWD 124 (371)
Q Consensus 86 ~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd 124 (371)
+++++++++|++.|++++|+|++++|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367899999999999999999999999999999999997
No 261
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.11 E-value=1.4e-08 Score=81.90 Aligned_cols=241 Identities=10% Similarity=0.096 Sum_probs=148.3
Q ss_pred cCCeEEEEEcC---CCC-EEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEE
Q 041206 96 KKAVTNVGLPS---GSN-KLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNAL 171 (371)
Q Consensus 96 ~~~V~~~~~~~---~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~ 171 (371)
+..+..+.|.. ++. .|+-+..+|.|.++..........+..-.. -++......++
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~---------------------~ki~~~~~lsl 127 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS---------------------KKISVVEALSL 127 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch---------------------hhhhheeeeEE
Confidence 34566666653 344 455566778888887554433333322100 00011123455
Q ss_pred EEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc--eeEecccceeeeeCCCeEEEEECC-C
Q 041206 172 VVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT--RWNSKEEAAVFEFCGHTTRTWNLD-N 245 (371)
Q Consensus 172 ~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~--~l~~~~~~~~~~~~dg~i~iwd~~-~ 245 (371)
.|++. .++++-.+|.+.+-+.... ..+..+..+.|. ++....|+... .+++| +.|+.+..||++ .
T Consensus 128 D~~~~~~~i~vs~s~G~~~~v~~t~~--~le~vq~wk~He~E~Wta~f~~~~pnlvytG-------gDD~~l~~~D~R~p 198 (339)
T KOG0280|consen 128 DISTSGTKIFVSDSRGSISGVYETEM--VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTG-------GDDGSLSCWDIRIP 198 (339)
T ss_pred EeeccCceEEEEcCCCcEEEEeccee--eeeecccccccceeeeeeecccCCCceEEec-------CCCceEEEEEecCC
Confidence 56554 7888888898885554443 124556889999 88889988755 37899 999999999999 4
Q ss_pred ceEEEE-eecCCCcEEEEEEc---CCeEEEEeCCCcEEEEEccCCCC----cceecceEEEEecCC-CCEEEEecCCCeE
Q 041206 246 LECVQT-LKGHSDTVTSLLFW---DEYLFSSSLDETIKIWLYTHTKN----NAELSSLFGMLDAEA-KPVLFSSGKDSAI 316 (371)
Q Consensus 246 ~~~~~~-~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~-~~~l~~~~~d~~i 316 (371)
++.+.. .+.|...|.++.-+ +.++++|+.|..|++||.+.... ......+..+...+. ...+++++.-+-.
T Consensus 199 ~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ 278 (339)
T KOG0280|consen 199 KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGA 278 (339)
T ss_pred cceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCc
Confidence 444443 55788899999888 56999999999999999885432 112233443333332 2234444444456
Q ss_pred EEEEcCCccee----eeec--CCceEEEEEeCCCC-eEEeeC-CCCcEE-EEEccccce
Q 041206 317 RLYELPSFKLR----ARIF--SRREVEVDQIGPAG-LFFPGD-ASGSVG-VWKWLLAEQ 366 (371)
Q Consensus 317 ~iwd~~~~~~~----~~~~--~~~~v~~~~~s~~~-~l~~~~-~dg~i~-iw~~~~~~~ 366 (371)
+|-+....... .... |.+-+..-.|.... .|+|++ .|+.++ +|-.-++.+
T Consensus 279 ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~~ 337 (339)
T KOG0280|consen 279 KILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGEP 337 (339)
T ss_pred eEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCCc
Confidence 77776654322 1111 45556666774333 788876 577755 886655543
No 262
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.10 E-value=7.3e-10 Score=99.70 Aligned_cols=258 Identities=14% Similarity=0.123 Sum_probs=162.5
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEeCCCe--eEEE--e--e-cCCEEEE-------------ec
Q 041206 96 KKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDS-GRCVNVITNGAE--IGCL--I--S-EGSWVFL-------------GL 154 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~--~~~~--~--~-~~~~~~~-------------~~ 154 (371)
.+++.++..+|.|+-+|.++.-| +.+-|+.. +.+.+-+.+..+ +... . + ..-+++. .+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 46788999999999999999888 55666553 333333332111 1111 1 1 1222222 33
Q ss_pred CCcEEEE-EeCCCCeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc-eeEecccc
Q 041206 155 PNAVKSW-RVNAASVNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT-RWNSKEEA 228 (371)
Q Consensus 155 ~~~i~~~-~~~~~~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~l~~~~~~ 228 (371)
++.|.++ .-|+..|+.+.|+++ .+++++.|-.+..||++... .++..+.... ....++|+... .+.+.
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~---~p~ys~~~w~s~asqVkwnyk~p~vlas--- 176 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH---RPFYSTSSWRSAASQVKWNYKDPNVLAS--- 176 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC---cceeeeecccccCceeeecccCcchhhh---
Confidence 3444332 335668999999876 99999999999999999875 4455554444 77888998754 56666
Q ss_pred eeeeeCCCeEEEEECCCc-eEEEEeecCCCcEEEEEEc---CCeEEEEeCCCcEEEEEccCCCCcce--ec----ceEEE
Q 041206 229 AVFEFCGHTTRTWNLDNL-ECVQTLKGHSDTVTSLLFW---DEYLFSSSLDETIKIWLYTHTKNNAE--LS----SLFGM 298 (371)
Q Consensus 229 ~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~--~~----~~~~~ 298 (371)
+..+.|++||++.+ .++..+++|...|+.+.|+ ...+++++.|++++.||......... +. .....
T Consensus 177 ----shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r 252 (1081)
T KOG0309|consen 177 ----SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGR 252 (1081)
T ss_pred ----ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecc
Confidence 78889999999875 5778899999999999998 57899999999999999766543111 10 01111
Q ss_pred EecCCCCEEEEec-CCCeEEEEEcC---------C-cceeeeec-CCceEEEEEe--------CCCC---eEEeeCCCCc
Q 041206 299 LDAEAKPVLFSSG-KDSAIRLYELP---------S-FKLRARIF-SRREVEVDQI--------GPAG---LFFPGDASGS 355 (371)
Q Consensus 299 ~~~~~~~~l~~~~-~d~~i~iwd~~---------~-~~~~~~~~-~~~~v~~~~~--------s~~~---~l~~~~~dg~ 355 (371)
+.|-+..+++.-. .++.+.+++-+ + .+++..+. |...|...-| ..|. .|+|=+.|..
T Consensus 253 ~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~ 332 (1081)
T KOG0309|consen 253 YLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQT 332 (1081)
T ss_pred ccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCc
Confidence 1121211221111 11234443332 2 23555555 3344433322 2232 8999999999
Q ss_pred EEEEEcccc
Q 041206 356 VGVWKWLLA 364 (371)
Q Consensus 356 i~iw~~~~~ 364 (371)
+++|.+.+.
T Consensus 333 lrlWpI~~~ 341 (1081)
T KOG0309|consen 333 LRLWPIDSQ 341 (1081)
T ss_pred eEeeeccHH
Confidence 999998764
No 263
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=5.2e-08 Score=88.37 Aligned_cols=182 Identities=13% Similarity=0.047 Sum_probs=106.7
Q ss_pred CeeEEEEeCC--EEEEEeCC---CeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eE-ecccceeeeeCCCeE
Q 041206 167 SVNALVVNND--LLFAGSEG---GVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WN-SKEEAAVFEFCGHTT 238 (371)
Q Consensus 167 ~v~~~~~~~~--~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~-~~~~~~~~~~~dg~i 238 (371)
.+.+.+|+|+ .|+..+.+ ..|.+||+.++ +.. .+.... ...+.+|+|||+ ++ +. +.++..
T Consensus 197 ~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g----~~~-~l~~~~g~~~~~~~SPDG~~la~~~-------~~~g~~ 264 (427)
T PRK02889 197 PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATG----RRR-VVANFKGSNSAPAWSPDGRTLAVAL-------SRDGNS 264 (427)
T ss_pred CcccceEcCCCCEEEEEEccCCCcEEEEEECCCC----CEE-EeecCCCCccceEECCCCCEEEEEE-------ccCCCc
Confidence 4778899988 66655532 46999999887 322 233233 567899999996 54 55 667665
Q ss_pred EEE--ECCCceEEEEeecCCCcEEEEEEc--CCeEEEEe-CCCcEEEEEccCCCC-ccee----cceEEEEecCCCCEEE
Q 041206 239 RTW--NLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSS-LDETIKIWLYTHTKN-NAEL----SSLFGMLDAEAKPVLF 308 (371)
Q Consensus 239 ~iw--d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~iwd~~~~~~-~~~~----~~~~~~~~~~~~~~l~ 308 (371)
.+| |+.+++ ...+..+........|+ ++.|+..+ .++...+|.+..... ...+ .......+++++++++
T Consensus 265 ~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 265 QIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred eEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence 555 555444 44555555556677888 56666555 456777776543221 1111 0011123344455776
Q ss_pred EecCCC---eEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeC-CCCc--EEEEEcc
Q 041206 309 SSGKDS---AIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGD-ASGS--VGVWKWL 362 (371)
Q Consensus 309 ~~~~d~---~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~-~dg~--i~iw~~~ 362 (371)
..+.++ .|.+||+.+++... +..........|+||| .|+..+ ..|. +.+.++.
T Consensus 344 ~~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 344 YISRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred EEEccCCcEEEEEEECCCCCeEE-ccCCCCccCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence 655443 69999998876543 3333344678999999 555444 3333 4444553
No 264
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.06 E-value=4e-08 Score=86.51 Aligned_cols=180 Identities=11% Similarity=0.066 Sum_probs=127.4
Q ss_pred EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc----ceEEEEe------cCCc-------eeEec-ccceeeeeCCCeE
Q 041206 177 LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL----WFCSLSS------SNDT-------RWNSK-EEAAVFEFCGHTT 238 (371)
Q Consensus 177 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~----~v~~~~~------~~~~-------~l~~~-~~~~~~~~~dg~i 238 (371)
+++....||.+++|+...+ +..+.+.... ..++..| +|.. +.+++ ...++.|...|.|
T Consensus 7 ~~A~~~~~g~l~iw~t~~~----~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKN----QLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred eEeecCCCCeEEEEEccCc----eeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 7888889999999998887 3333333211 2233333 2210 01111 2344555899999
Q ss_pred EEEECCCceEEEEee--cCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCccee-----cceEEEEecCCCCEEEE
Q 041206 239 RTWNLDNLECVQTLK--GHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAEL-----SSLFGMLDAEAKPVLFS 309 (371)
Q Consensus 239 ~iwd~~~~~~~~~~~--~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~l~~ 309 (371)
.+|+...++....+. .|.+.|.++.+. -..|.+++.|+.+..|+.......... ....-+..++ +.++++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D-~~~l~~ 161 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPD-GKILLT 161 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCC-CCEEEe
Confidence 999999999888776 688999999988 468999999999999998776642221 1112224555 548887
Q ss_pred ecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCC-----C--eEEeeCCCCcEEEEEccc
Q 041206 310 SGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPA-----G--LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 310 ~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~-----~--~l~~~~~dg~i~iw~~~~ 363 (371)
++ +.|++||+++.+.+..+. |.++|+++.|-.+ | +|.+...+.-+.+|-+..
T Consensus 162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 76 479999999999999998 5789999999876 5 555666677888998765
No 265
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.03 E-value=5.2e-06 Score=73.17 Aligned_cols=258 Identities=16% Similarity=0.227 Sum_probs=148.5
Q ss_pred ccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeC----CCcEEEEECCCC--ce--EEEEeCC
Q 041206 66 KCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSR----DGRVSVWDRDSG--RC--VNVITNG 137 (371)
Q Consensus 66 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~----dg~v~iwd~~~~--~~--~~~~~~~ 137 (371)
..+-|..+++..+ ....+.+..+. -.....-++++|++++|++... ++.|..|++... ++ +.....
T Consensus 11 ~~~gI~~~~~d~~----~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~- 84 (345)
T PF10282_consen 11 KGGGIYVFRFDEE----TGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS- 84 (345)
T ss_dssp SSTEEEEEEEETT----TTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-
T ss_pred CCCcEEEEEEcCC----CCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-
Confidence 3356666664221 12233334332 3345677889999999999876 568888887764 22 222221
Q ss_pred CeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEe-CCCeEEEEeccCCCCcceeeEEEe--------
Q 041206 138 AEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGS-EGGVISVWKGTFVANPFKQVASIR-------- 206 (371)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~-------- 206 (371)
.......++++++ +++++. .+|.|.++++............+.
T Consensus 85 --------------------------~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~ 138 (345)
T PF10282_consen 85 --------------------------GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNP 138 (345)
T ss_dssp --------------------------SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESST
T ss_pred --------------------------CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcc
Confidence 1123456778777 666665 478999999887422112222221
Q ss_pred --cCc-ceEEEEecCCce-eEe-cccceeeeeCCCeEEEEECCCce--E--EEEee-cCCCcEEEEEEc--CCeEE-EEe
Q 041206 207 --APL-WFCSLSSSNDTR-WNS-KEEAAVFEFCGHTTRTWNLDNLE--C--VQTLK-GHSDTVTSLLFW--DEYLF-SSS 273 (371)
Q Consensus 207 --~~~-~v~~~~~~~~~~-l~~-~~~~~~~~~~dg~i~iwd~~~~~--~--~~~~~-~~~~~v~~~~~~--~~~l~-s~~ 273 (371)
... ...++.++|+++ +++ . -....|++|++.... . ...+. .....-+.+.|+ +++++ +.-
T Consensus 139 ~rq~~~h~H~v~~~pdg~~v~v~d-------lG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e 211 (345)
T PF10282_consen 139 DRQEGPHPHQVVFSPDGRFVYVPD-------LGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE 211 (345)
T ss_dssp TTTSSTCEEEEEE-TTSSEEEEEE-------TTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET
T ss_pred cccccccceeEEECCCCCEEEEEe-------cCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC
Confidence 112 678899999987 433 3 345689999997654 2 22232 233456788898 45554 455
Q ss_pred CCCcEEEEEccCCCC------------cce--ecceEEEEecCCCCEEEE-ecCCCeEEEEEcCC--cc--eeeeecC-C
Q 041206 274 LDETIKIWLYTHTKN------------NAE--LSSLFGMLDAEAKPVLFS-SGKDSAIRLYELPS--FK--LRARIFS-R 333 (371)
Q Consensus 274 ~dg~i~iwd~~~~~~------------~~~--~~~~~~~~~~~~~~~l~~-~~~d~~i~iwd~~~--~~--~~~~~~~-~ 333 (371)
.++.|.++++..... ... ......+...+++++|++ .-..+.|.+|++.. ++ .+..+.. .
T Consensus 212 ~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G 291 (345)
T PF10282_consen 212 LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGG 291 (345)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESS
T ss_pred CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCC
Confidence 678899998772221 000 002233344444555554 45678999999943 33 3333332 4
Q ss_pred ceEEEEEeCCCC--eEEeeCCCCcEEEEEcc
Q 041206 334 REVEVDQIGPAG--LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 334 ~~v~~~~~s~~~--~l~~~~~dg~i~iw~~~ 362 (371)
...+.++++|+| ++++.-.++.|.+|++.
T Consensus 292 ~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 292 KFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 457999999999 44555578899999885
No 266
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.03 E-value=9.3e-09 Score=94.87 Aligned_cols=253 Identities=12% Similarity=0.138 Sum_probs=163.3
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC--CeeEEEeecCCEEEEe--------cCCcEEEEEeC
Q 041206 95 HKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNG--AEIGCLISEGSWVFLG--------LPNAVKSWRVN 164 (371)
Q Consensus 95 h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~i~~~~~~ 164 (371)
--+.|.++.|.+....+.-|+..|.+.-.-....+....+..+ .-+..+..-...+++. ..+.+-+++..
T Consensus 53 ~~G~vS~v~fd~~eel~w~G~~gG~stS~~~s~~~~yssf~v~s~~~v~~~~~~~~~i~~ls~~alr~~~r~gl~~~~~~ 132 (1118)
T KOG1275|consen 53 SYGTVSSVHFDLHEELLWRGSSGGHSTSLLLSHRTGYSSFQVHSIDGVRRIEPTESGIFTLSKTALRATTRQGLPVFDFT 132 (1118)
T ss_pred ccccccccccCchHHhheecccCCceeeeecccccceEEEEEeccchhhhhhhhhhhheeeeHHHhhhhhccCceeeccc
Confidence 3457888888887778888887776665544433333333221 1111111111111111 11223333333
Q ss_pred CCCe----eEEEEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeE
Q 041206 165 AASV----NALVVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTT 238 (371)
Q Consensus 165 ~~~v----~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i 238 (371)
.... ..+...|+.++.|+....+..+|+++. +..+...... .+.-+.. +++ +.+| ...|+|
T Consensus 133 ~~s~~~M~~~~~~~~~~~i~Gg~Q~~li~~Dl~~~----~e~r~~~v~a~~v~imR~--Nnr~lf~G-------~t~G~V 199 (1118)
T KOG1275|consen 133 CPSMTKMASSLHMGPSTLIMGGLQEKLIHIDLNTE----KETRTTNVSASGVTIMRY--NNRNLFCG-------DTRGTV 199 (1118)
T ss_pred CCCHHHHHHHhccCCcceeecchhhheeeeecccc----eeeeeeeccCCceEEEEe--cCcEEEee-------cccceE
Confidence 2221 122235568888888888999999987 4444444333 4443333 344 8889 999999
Q ss_pred EEEECCCceEEEEeecCCCcEEEEEEcCCeEEEEeC---------CCcEEEEEccCCCCcceecc----eEEEEecCCCC
Q 041206 239 RTWNLDNLECVQTLKGHSDTVTSLLFWDEYLFSSSL---------DETIKIWLYTHTKNNAELSS----LFGMLDAEAKP 305 (371)
Q Consensus 239 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~ 305 (371)
.+-|.++.+.++++..|++.|.++...|+.|++|+. |..|+|||++..+...++.- -..-+.|.-..
T Consensus 200 ~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t 279 (1118)
T KOG1275|consen 200 FLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTT 279 (1118)
T ss_pred EeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccc
Confidence 999999999999999999999999999999999985 55689999988775433311 01113333344
Q ss_pred EEEEecCCCeEEEEEcCCcc-e---eeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEE
Q 041206 306 VLFSSGKDSAIRLYELPSFK-L---RARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWK 360 (371)
Q Consensus 306 ~l~~~~~d~~i~iwd~~~~~-~---~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~ 360 (371)
.+++.+..|...+-|..+.. + +..+. ....+..+++|+++ .++.|..+|.|.+|.
T Consensus 280 ~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 280 RLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 78888899999999943321 1 11222 24559999999999 999999999999998
No 267
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.02 E-value=1.2e-06 Score=73.00 Aligned_cols=213 Identities=14% Similarity=0.097 Sum_probs=132.5
Q ss_pred ceEEEEEeccCCCCccCCceeeEeeeCc--cCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEee
Q 041206 68 RFLHSWVHSVDGDNTTNSLATLMKLNGH--KKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLIS 145 (371)
Q Consensus 68 ~~i~~~~~~~~~~~~~~~~~~~~~l~~h--~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 145 (371)
+.|..++ ..+++.+....-- .....+. ..+++..+++++.++.|..||..+|+.+..+....++.
T Consensus 3 g~l~~~d--------~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~---- 69 (238)
T PF13360_consen 3 GTLSALD--------PRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS---- 69 (238)
T ss_dssp SEEEEEE--------TTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG----
T ss_pred CEEEEEE--------CCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc----
Confidence 4456666 3466666666431 1222221 22356678888899999999999999988887644321
Q ss_pred cCCEEEEecCCcEEEEEeCCCCeeEEEEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEE-ecCc------ceEEEEecC
Q 041206 146 EGSWVFLGLPNAVKSWRVNAASVNALVVNNDLLFAGSEGGVISVWKGTFVANPFKQVASI-RAPL------WFCSLSSSN 218 (371)
Q Consensus 146 ~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~------~v~~~~~~~ 218 (371)
.......+.+++++.++.++.+|..++ +.+-.. .... ......+.
T Consensus 70 -----------------------~~~~~~~~~v~v~~~~~~l~~~d~~tG----~~~W~~~~~~~~~~~~~~~~~~~~~- 121 (238)
T PF13360_consen 70 -----------------------GAPVVDGGRVYVGTSDGSLYALDAKTG----KVLWSIYLTSSPPAGVRSSSSPAVD- 121 (238)
T ss_dssp -----------------------SGEEEETTEEEEEETTSEEEEEETTTS----CEEEEEEE-SSCTCSTB--SEEEEE-
T ss_pred -----------------------ceeeecccccccccceeeeEecccCCc----ceeeeeccccccccccccccCceEe-
Confidence 112445557777778889999998888 444442 2221 11122222
Q ss_pred CceeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCc-----------EEEEEEcCCeEEEEeCCCcEEEEEccCCC
Q 041206 219 DTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDT-----------VTSLLFWDEYLFSSSLDETIKIWLYTHTK 287 (371)
Q Consensus 219 ~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------v~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 287 (371)
.+.++.+ ..++.|..+|+++|+.+......... ...+.+.+..++.++.++.+.-+|+...+
T Consensus 122 ~~~~~~~-------~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~ 194 (238)
T PF13360_consen 122 GDRLYVG-------TSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGE 194 (238)
T ss_dssp TTEEEEE-------ETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTE
T ss_pred cCEEEEE-------eccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCC
Confidence 3456666 78999999999999998877664422 12333344577777778863333887776
Q ss_pred Ccc--eecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeee
Q 041206 288 NNA--ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRAR 329 (371)
Q Consensus 288 ~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 329 (371)
..- ............++ .++.++.++.|..||+++++.+.+
T Consensus 195 ~~w~~~~~~~~~~~~~~~~-~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 195 KLWSKPISGIYSLPSVDGG-TLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEEECSS-ECECEECCCT-EEEEEETTTEEEEEETTTTEEEEE
T ss_pred EEEEecCCCccCCceeeCC-EEEEEeCCCEEEEEECCCCCEEeE
Confidence 311 12223322344455 677777899999999999988754
No 268
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=6.5e-08 Score=87.96 Aligned_cols=333 Identities=9% Similarity=0.021 Sum_probs=202.2
Q ss_pred cCCCCceeeccCcc------cccceeEEEEEeeccceeeeeeeeccee---ec-----cceeeCCccceEEEEEeccCCC
Q 041206 15 HSEGGETMMSDDDD------LMKGRAEEREEMFGFGLAAMAIRVCNNW---IS-----DSCVYGDKCRFLHSWVHSVDGD 80 (371)
Q Consensus 15 ~sp~g~~l~~~~~d------~~~~~~~~~~~~h~~~v~~~~~~~~~~~---~~-----~~~~~~~~~~~i~~~~~~~~~~ 80 (371)
.+|.|- +|-|... ..+.++++.+..|...|+.+.+.|...- ++ -....++..+.|-+|++
T Consensus 23 w~~~GL-iAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~----- 96 (1062)
T KOG1912|consen 23 WSPSGL-IAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF----- 96 (1062)
T ss_pred cCccce-EEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe-----
Confidence 466654 4544433 4568889999999999999998875542 11 11234556677888883
Q ss_pred CccCCceeeEeeeCccCCeEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCceEEEEeCCCe-eEEEee---cCC-EEE
Q 041206 81 NTTNSLATLMKLNGHKKAVTNVGLPS---GS-NKLYSGSRDGRVSVWDRDSGRCVNVITNGAE-IGCLIS---EGS-WVF 151 (371)
Q Consensus 81 ~~~~~~~~~~~l~~h~~~V~~~~~~~---~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~~---~~~-~~~ 151 (371)
.....+..+..|.++|..++|-+ +. ..|+.-....++.+|+..+|+.......... ..|+.. +.. +.+
T Consensus 97 ---~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 97 ---VLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred ---hhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEE
Confidence 34456778888999999999976 33 4566666678899999999998887765443 334442 222 222
Q ss_pred EecCC---------------cEEEEEeCCC----------------------------CeeEEEEeCC--EEEEEeCCCe
Q 041206 152 LGLPN---------------AVKSWRVNAA----------------------------SVNALVVNND--LLFAGSEGGV 186 (371)
Q Consensus 152 ~~~~~---------------~i~~~~~~~~----------------------------~v~~~~~~~~--~l~~~~~dg~ 186 (371)
.+..| ..+.+.+.+. -...++|+|. .++.......
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre 253 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE 253 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence 23333 2333333222 1122455666 4555566788
Q ss_pred EEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce---eEecccceeeeeCCCeEEEEECCCceEEEEe-----e-cCC
Q 041206 187 ISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR---WNSKEEAAVFEFCGHTTRTWNLDNLECVQTL-----K-GHS 256 (371)
Q Consensus 187 v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~---l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~-----~-~~~ 256 (371)
+.++|++-. .++....... .+.-+.+-|+.+ |++. -.||.+.+|--+......+. . .-.
T Consensus 254 llv~dle~~----~~l~vvpier~~akfv~vlP~~~rd~Lfcl-------H~nG~ltirvrk~~~~~f~~~~~~l~~dl~ 322 (1062)
T KOG1912|consen 254 LLVFDLEYE----CCLAVVPIERGGAKFVDVLPDPRRDALFCL-------HSNGRLTIRVRKEEPTEFKKPNASLSMDLG 322 (1062)
T ss_pred eEEEcchhh----ceeEEEEeccCCcceeEeccCCCcceEEEE-------ecCCeEEEEEeeccCccccccchhhccccc
Confidence 999999877 6777776666 677778888764 8899 99999999976541111110 0 001
Q ss_pred CcEEEEEEc--------------CCeEEEEeCCCcEEEEEccCCCC----------------------------------
Q 041206 257 DTVTSLLFW--------------DEYLFSSSLDETIKIWLYTHTKN---------------------------------- 288 (371)
Q Consensus 257 ~~v~~~~~~--------------~~~l~s~~~dg~i~iwd~~~~~~---------------------------------- 288 (371)
.++.+++.- ++.++.--.+|...+|.++.++.
T Consensus 323 ~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~ 402 (1062)
T KOG1912|consen 323 EQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSD 402 (1062)
T ss_pred cceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhh
Confidence 122222211 23333334567777777653331
Q ss_pred -cce-----------ecceEEEEecCCC-------CEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCCeEE
Q 041206 289 -NAE-----------LSSLFGMLDAEAK-------PVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAGLFF 348 (371)
Q Consensus 289 -~~~-----------~~~~~~~~~~~~~-------~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~l~ 348 (371)
..+ ....+....++++ .+++.|...|+|.++|+.++..-..+. |...|.++.|--+..|+
T Consensus 403 dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslv 482 (1062)
T KOG1912|consen 403 DGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLV 482 (1062)
T ss_pred cCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEE
Confidence 000 0001111112222 278889999999999999988777776 78889999997665444
Q ss_pred eeC----------CCCcEEEEEcccccee
Q 041206 349 PGD----------ASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 349 ~~~----------~dg~i~iw~~~~~~~~ 367 (371)
+.+ .-+.+.+=++.++...
T Consensus 483 Sfsys~~n~~sg~vrN~l~vtdLrtGlsk 511 (1062)
T KOG1912|consen 483 SFSYSHVNSASGGVRNDLVVTDLRTGLSK 511 (1062)
T ss_pred EeeeccccccccceeeeEEEEEccccccc
Confidence 333 2345566677766443
No 269
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.01 E-value=2.4e-07 Score=84.21 Aligned_cols=183 Identities=12% Similarity=-0.057 Sum_probs=107.0
Q ss_pred CeeEEEEeCC--EEEEEeCC---CeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eE-ecccceeeeeCC--C
Q 041206 167 SVNALVVNND--LLFAGSEG---GVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WN-SKEEAAVFEFCG--H 236 (371)
Q Consensus 167 ~v~~~~~~~~--~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~-~~~~~~~~~~~d--g 236 (371)
.+.+..|+|+ +++....+ ..|++||+.++ +.. .+..+. .+.+++|+||++ ++ +. +.+ .
T Consensus 191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g----~~~-~~~~~~~~~~~~~~spDg~~l~~~~-------~~~~~~ 258 (417)
T TIGR02800 191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG----QRE-KVASFPGMNGAPAFSPDGSKLAVSL-------SKDGNP 258 (417)
T ss_pred ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC----CEE-EeecCCCCccceEECCCCCEEEEEE-------CCCCCc
Confidence 3667778888 56555543 47999999876 222 233333 566789999986 54 33 333 4
Q ss_pred eEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeC-CC--cEEEEEccCCCCccee---cceEEEEecCCCCEEE
Q 041206 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSL-DE--TIKIWLYTHTKNNAEL---SSLFGMLDAEAKPVLF 308 (371)
Q Consensus 237 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg--~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~l~ 308 (371)
.|++||+.+++.. .+..+........|+ ++.|+..+. ++ .|.++|+...+..... .......+.+++.+++
T Consensus 259 ~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~ 337 (417)
T TIGR02800 259 DIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIA 337 (417)
T ss_pred cEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEE
Confidence 6999999877643 344444445566777 566765553 33 5777776544321110 1112223344445777
Q ss_pred EecCCC---eEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCCCC---cEEEEEccc
Q 041206 309 SSGKDS---AIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDASG---SVGVWKWLL 363 (371)
Q Consensus 309 ~~~~d~---~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg---~i~iw~~~~ 363 (371)
..+.++ .|.+||+.++... .+..........|+||+ .|+..+.++ .+++.+...
T Consensus 338 ~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 338 FVHREGGGFNIAVMDLDGGGER-VLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred EEEccCCceEEEEEeCCCCCeE-EccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence 666655 7889998875432 22222234556899999 565555443 455555443
No 270
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=2.3e-09 Score=93.65 Aligned_cols=205 Identities=14% Similarity=0.168 Sum_probs=140.9
Q ss_pred eeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------ceEEEEeCCCeeEEEeecCCEEEEecCCcEEE
Q 041206 88 TLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSG-------RCVNVITNGAEIGCLISEGSWVFLGLPNAVKS 160 (371)
Q Consensus 88 ~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (371)
.+..+.||+..|..++--.+.+.+++++.|++|++|.++.. .|..+
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfT--------------------------- 779 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFT--------------------------- 779 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeE---------------------------
Confidence 45688999999999988778889999999999999998642 23333
Q ss_pred EEeCCCCeeEEEEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEe---cCcceEEEEecCC--ce--eEecccceeeee
Q 041206 161 WRVNAASVNALVVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIR---APLWFCSLSSSND--TR--WNSKEEAAVFEF 233 (371)
Q Consensus 161 ~~~~~~~v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~~~~--~~--l~~~~~~~~~~~ 233 (371)
|..|+.+|.++.|-.+.-.+++-||.|.+||.-.+ +++..+. .+..+.-+..-++ .. ++.+ +
T Consensus 780 Y~aHkk~i~~igfL~~lr~i~ScD~giHlWDPFig----r~Laq~~dapk~~a~~~ikcl~nv~~~iliAgc-------s 848 (1034)
T KOG4190|consen 780 YQAHKKPIHDIGFLADLRSIASCDGGIHLWDPFIG----RLLAQMEDAPKEGAGGNIKCLENVDRHILIAGC-------S 848 (1034)
T ss_pred hhhccCcccceeeeeccceeeeccCcceeeccccc----chhHhhhcCcccCCCceeEecccCcchheeeec-------c
Confidence 33467789999998885556667999999998766 4443222 1223333333332 22 3445 6
Q ss_pred CCCeEEEEECCCceEEEEee-----cCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcceecceE----EEEecC
Q 041206 234 CGHTTRTWNLDNLECVQTLK-----GHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAELSSLF----GMLDAE 302 (371)
Q Consensus 234 ~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~ 302 (371)
...+|+++|.+.++....++ +..+-+.+++.. ++.++.+-.+|+|.+.|.+++.-......+. ....|.
T Consensus 849 aeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaaps 928 (1034)
T KOG4190|consen 849 AESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPS 928 (1034)
T ss_pred chhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCch
Confidence 78899999999887766654 334567777776 8999999999999999988877433222211 123333
Q ss_pred CCCEEEEecCCCeEEE-EEcCCcceeeeec
Q 041206 303 AKPVLFSSGKDSAIRL-YELPSFKLRARIF 331 (371)
Q Consensus 303 ~~~~l~~~~~d~~i~i-wd~~~~~~~~~~~ 331 (371)
++ .++....|..+.+ |....+....+..
T Consensus 929 dq-~L~~saldHslaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 929 DQ-ALAQSALDHSLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred hH-HHHhhcccceeEeeehhcCCeeeeccC
Confidence 33 6777777888888 8776665544443
No 271
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.96 E-value=2e-06 Score=85.92 Aligned_cols=240 Identities=14% Similarity=0.133 Sum_probs=141.3
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--
Q 041206 100 TNVGLPS-GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND-- 176 (371)
Q Consensus 100 ~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~-- 176 (371)
..+++++ +++++++-+.++.|++||.. +..+..+....... . .++... +..-.....++++++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G-~----------~dG~~~--~a~f~~P~GIavd~~gn 636 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEG-L----------RDGSFE--DATFNRPQGLAYNAKKN 636 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcC-C----------CCCchh--ccccCCCcEEEEeCCCC
Confidence 3577876 45566666778889999975 44443332211000 0 000000 000113456677654
Q ss_pred EEEEEe-CCCeEEEEeccCCCCcceeeEEEec------------------CcceEEEEecC-Cce-eEecccceeeeeCC
Q 041206 177 LLFAGS-EGGVISVWKGTFVANPFKQVASIRA------------------PLWFCSLSSSN-DTR-WNSKEEAAVFEFCG 235 (371)
Q Consensus 177 ~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~------------------~~~v~~~~~~~-~~~-l~~~~~~~~~~~~d 235 (371)
.|+++. ..+.|+++|+.++ .+.++.+ ......++++| ++. +++. +.+
T Consensus 637 ~LYVaDt~n~~Ir~id~~~~-----~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad-------~~~ 704 (1057)
T PLN02919 637 LLYVADTENHALREIDFVNE-----TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM-------AGQ 704 (1057)
T ss_pred EEEEEeCCCceEEEEecCCC-----EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE-------CCC
Confidence 444443 3466777777654 2222211 11345789998 455 5666 778
Q ss_pred CeEEEEECCCceEEEEeecC---------------CCcEEEEEEc--CC-eEEEEeCCCcEEEEEccCCCCcc-------
Q 041206 236 HTTRTWNLDNLECVQTLKGH---------------SDTVTSLLFW--DE-YLFSSSLDETIKIWLYTHTKNNA------- 290 (371)
Q Consensus 236 g~i~iwd~~~~~~~~~~~~~---------------~~~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~------- 290 (371)
+.|++||..++... .+.+. -.....++++ ++ ++++-+.++.|++||+.......
T Consensus 705 ~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~ 783 (1057)
T PLN02919 705 HQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT 783 (1057)
T ss_pred CeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence 99999999876543 22111 1234567887 34 55566678999999976533100
Q ss_pred ------------------eecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecC--------------CceEEE
Q 041206 291 ------------------ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFS--------------RREVEV 338 (371)
Q Consensus 291 ------------------~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--------------~~~v~~ 338 (371)
....-..+...+++.++++-..++.|++||..++........ -.....
T Consensus 784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~G 863 (1057)
T PLN02919 784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAG 863 (1057)
T ss_pred cCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceE
Confidence 000112333344455888888899999999988665432211 125678
Q ss_pred EEeCCCC-eEEeeCCCCcEEEEEccccce
Q 041206 339 DQIGPAG-LFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 339 ~~~s~~~-~l~~~~~dg~i~iw~~~~~~~ 366 (371)
++++++| .+++-+.++.|++||+.+++.
T Consensus 864 Iavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 864 LALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 9999999 888888999999999987654
No 272
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.95 E-value=5.5e-09 Score=94.21 Aligned_cols=125 Identities=22% Similarity=0.241 Sum_probs=94.5
Q ss_pred CCceeeEeeeCccCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEE
Q 041206 84 NSLATLMKLNGHKKAVTNVGLPS-GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWR 162 (371)
Q Consensus 84 ~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 162 (371)
.+...-..+.||..+|+.+-|+| ....|++++.|..+..||+++-.. .+..|+
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--------------------------p~ys~~ 155 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--------------------------PFYSTS 155 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--------------------------ceeeee
Confidence 44455677899999999999999 456899999999999999886532 122222
Q ss_pred eCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc--eeEecccceeeeeCCCe
Q 041206 163 VNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT--RWNSKEEAAVFEFCGHT 237 (371)
Q Consensus 163 ~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~--~l~~~~~~~~~~~~dg~ 237 (371)
.-......+.|+-. .+.+.+..+.|++||++.+. .++..+++|. .|+.+.|..-- .+.+. +.|++
T Consensus 156 ~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs---~pl~s~K~~vs~vn~~~fnr~~~s~~~s~-------~~d~t 225 (1081)
T KOG0309|consen 156 SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS---TPLCSLKGHVSSVNSIDFNRFKYSEIMSS-------SNDGT 225 (1081)
T ss_pred cccccCceeeecccCcchhhhccCCceEEEeccCCC---cceEEecccceeeehHHHhhhhhhhhccc-------CCCCc
Confidence 22233455666644 55566677889999999886 6778888888 99999998743 48888 99999
Q ss_pred EEEEECC
Q 041206 238 TRTWNLD 244 (371)
Q Consensus 238 i~iwd~~ 244 (371)
|+.||..
T Consensus 226 vkfw~y~ 232 (1081)
T KOG0309|consen 226 VKFWDYS 232 (1081)
T ss_pred eeeeccc
Confidence 9999976
No 273
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.95 E-value=8.1e-07 Score=79.91 Aligned_cols=248 Identities=10% Similarity=0.052 Sum_probs=152.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCe-----------e-EEEe-ecCCEEEEecCCcEEEEEeCCCCe-----
Q 041206 107 GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAE-----------I-GCLI-SEGSWVFLGLPNAVKSWRVNAASV----- 168 (371)
Q Consensus 107 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-----------~-~~~~-~~~~~~~~~~~~~i~~~~~~~~~v----- 168 (371)
.+..++.++.+|.+.-+|.++|+.+........ + .... .++..++.+.++.+..+|..++.+
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 356888888889999999999998887765431 0 0112 233444445678888899877721
Q ss_pred -----e-EEEEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEE--EecC---CceeEecccceeeeeCCCe
Q 041206 169 -----N-ALVVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSL--SSSN---DTRWNSKEEAAVFEFCGHT 237 (371)
Q Consensus 169 -----~-~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~--~~~~---~~~l~~~~~~~~~~~~dg~ 237 (371)
. +-.+..+.+++++.++.+..+|..++ +.+-.+....+...+ ..+| ++.++.+ +.+|.
T Consensus 148 ~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG----~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~-------~~~g~ 216 (394)
T PRK11138 148 VAGEALSRPVVSDGLVLVHTSNGMLQALNESDG----AVKWTVNLDVPSLTLRGESAPATAFGGAIVG-------GDNGR 216 (394)
T ss_pred CCCceecCCEEECCEEEEECCCCEEEEEEccCC----CEeeeecCCCCcccccCCCCCEEECCEEEEE-------cCCCE
Confidence 1 11223347778888999999999998 444433322110000 0111 2345555 88999
Q ss_pred EEEEECCCceEEEEeecCCC----c-------EEEEEEcCCeEEEEeCCCcEEEEEccCCCCcce--ecceEEEEecCCC
Q 041206 238 TRTWNLDNLECVQTLKGHSD----T-------VTSLLFWDEYLFSSSLDETIKIWLYTHTKNNAE--LSSLFGMLDAEAK 304 (371)
Q Consensus 238 i~iwd~~~~~~~~~~~~~~~----~-------v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~ 304 (371)
+..+|..+++.+...+.... . ..+....++.++.++.+|.+..+|..+.+..-. ...... ....++
T Consensus 217 v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~-~~~~~~ 295 (394)
T PRK11138 217 VSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSVND-FAVDGG 295 (394)
T ss_pred EEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCccC-cEEECC
Confidence 99999999887655431110 0 011122366777788899999999876653111 111110 111233
Q ss_pred CEEEEecCCCeEEEEEcCCcceeeeecC--CceEEEEEeCCCCeEEeeCCCCcEEEEEccccceec
Q 041206 305 PVLFSSGKDSAIRLYELPSFKLRARIFS--RREVEVDQIGPAGLFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 305 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
.++.++.+|.+..+|..+++.+..... .....+..+ -++.|+.++.||.|.+.|..+++...
T Consensus 296 -~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v-~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 296 -RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL-YNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE-ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 677788899999999999987765431 111222222 14478888999999999998887654
No 274
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.94 E-value=1.6e-07 Score=75.03 Aligned_cols=178 Identities=12% Similarity=0.048 Sum_probs=117.5
Q ss_pred EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc--eeEecccceeeeeCCCeEEEEECCCceEEEEee
Q 041206 177 LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT--RWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLK 253 (371)
Q Consensus 177 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~--~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~ 253 (371)
+|+.|+..|...+|.+.+.. ..++....+. .|+-+.-.-+. .+..+ +.|.++++.++..+.......
T Consensus 86 ~la~gG~~g~fd~~~~~tn~---~h~~~cd~snn~v~~~~r~cd~~~~~~i~-------sndht~k~~~~~~~s~~~~~h 155 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTND---GHLYQCDVSNNDVTLVKRYCDLKFPLNIA-------SNDHTGKTMVVSGDSNKFAVH 155 (344)
T ss_pred EEEeccccceeeeecccCcc---cceeeecccccchhhhhhhcccccceeec-------cCCcceeEEEEecCcccceee
Confidence 89999999999999998763 2223333332 33222211222 25666 889999999887554433332
Q ss_pred cCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCccee--------cceEEEEecCCCCEEEEecCCCeEEEEEcCC
Q 041206 254 GHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAEL--------SSLFGMLDAEAKPVLFSSGKDSAIRLYELPS 323 (371)
Q Consensus 254 ~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 323 (371)
...-.+.+++++ +.++++.+....|..|.+....+...- ......++.. ...+|++..||++.|||++.
T Consensus 156 ~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~-~~~FAv~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 156 NQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN-DLQFAVVFQDGTCAIYDVRN 234 (344)
T ss_pred ccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccC-cceEEEEecCCcEEEEEecc
Confidence 222236778887 788999999899999987654431111 1222234444 44899999999999999998
Q ss_pred cceeeeec------CCceEEEEEeCCCC---eEEeeCCCCcEEEEEccccc
Q 041206 324 FKLRARIF------SRREVEVDQIGPAG---LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 324 ~~~~~~~~------~~~~v~~~~~s~~~---~l~~~~~dg~i~iw~~~~~~ 365 (371)
........ |.+.++.+.|++.| +|+..-.=+.+.+-|+++..
T Consensus 235 ~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 235 MATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred cccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 65433222 57899999999977 66665566788898887653
No 275
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=2.1e-07 Score=84.05 Aligned_cols=274 Identities=14% Similarity=0.117 Sum_probs=174.2
Q ss_pred eeeeeeecceeeccceeeCCccceEEEEEeccCCCC-------ccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCC
Q 041206 46 AAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDN-------TTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDG 118 (371)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg 118 (371)
.+++++....++ .-|+.++.+++..+..+-.. .+.+...-++|.||+..|.-+.|+.+.+.|-|...+|
T Consensus 18 ~c~~WNke~gyI----AcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 18 HCAEWNKESGYI----ACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred EEEEEcccCCeE----EeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 355565543333 34688888888886554221 2334455679999999999999999999999999999
Q ss_pred cEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCC
Q 041206 119 RVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVWKGTFVA 196 (371)
Q Consensus 119 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~ 196 (371)
-|.+|-+-.|+-....... .+..-|.+++|+.+ .++..-.||.|.+=.+...
T Consensus 94 lIiVWmlykgsW~EEMiNn-------------------------RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN- 147 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINN-------------------------RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN- 147 (1189)
T ss_pred eEEEEeeecccHHHHHhhC-------------------------cCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc-
Confidence 9999998877533222110 01123777888766 7777777887777666654
Q ss_pred CcceeeE-EEecCcceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCc-------eEEE----EeecCCCcEEEEE
Q 041206 197 NPFKQVA-SIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNL-------ECVQ----TLKGHSDTVTSLL 263 (371)
Q Consensus 197 ~~~~~~~-~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~-------~~~~----~~~~~~~~v~~~~ 263 (371)
+... .+++ .....+.|++|.+ ++.+ -..|.+.+||.... .+.- .+......|..+.
T Consensus 148 ---RIwgKeLkg-~~l~hv~ws~D~~~~Lf~-------~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~ 216 (1189)
T KOG2041|consen 148 ---RIWGKELKG-QLLAHVLWSEDLEQALFK-------KANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIE 216 (1189)
T ss_pred ---eecchhcch-heccceeecccHHHHHhh-------hcCCcEEEecccccHHHhhhhceEEeeeeeecCCCcccccee
Confidence 2221 1121 1455788999986 5666 77899999997642 1111 1111223466777
Q ss_pred Ec-C---------CeEEEEeCCCcEEEEEccCCCCccee---cceEEEEecCCCCEEEEecCC---------CeEEEEEc
Q 041206 264 FW-D---------EYLFSSSLDETIKIWLYTHTKNNAEL---SSLFGMLDAEAKPVLFSSGKD---------SAIRLYEL 321 (371)
Q Consensus 264 ~~-~---------~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d---------~~i~iwd~ 321 (371)
|. + ..|+.+-.+|.+.+-.-........+ -.+....+.+++..|+.++.+ +.|.+|..
T Consensus 217 w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp 296 (1189)
T KOG2041|consen 217 WNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP 296 (1189)
T ss_pred eccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEecc
Confidence 75 1 37888888888877654433332221 133445566666688888754 25666543
Q ss_pred CCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcc
Q 041206 322 PSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 322 ~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~ 362 (371)
-+..+..+. ....|++++|-..| .++.+ .|+.|++=+++
T Consensus 297 -~G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanIR 337 (1189)
T KOG2041|consen 297 -YGHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANIR 337 (1189)
T ss_pred -chhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEEEeec
Confidence 356666666 46789999998877 55554 46676665554
No 276
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.91 E-value=4.2e-08 Score=79.92 Aligned_cols=215 Identities=16% Similarity=0.277 Sum_probs=138.8
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eEE----EEeCC-------------CeeEEEee-----cCCEEEE
Q 041206 96 KKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGR-CVN----VITNG-------------AEIGCLIS-----EGSWVFL 152 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~----~~~~~-------------~~~~~~~~-----~~~~~~~ 152 (371)
.+.|+++.|...|.||++|...|.|.++.-+... |.. .++.+ ..+..+.+ ...++++
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4679999999999999999999999999865432 211 12221 12223321 2567888
Q ss_pred ecCCcEEEEEeCCC------------------------------------------------------CeeEEEEeCC-E
Q 041206 153 GLPNAVKSWRVNAA------------------------------------------------------SVNALVVNND-L 177 (371)
Q Consensus 153 ~~~~~i~~~~~~~~------------------------------------------------------~v~~~~~~~~-~ 177 (371)
+.+.+|++|.+... -++++.++.+ .
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 99999999988544 4677888777 4
Q ss_pred EEEEeCCCeEEEEeccCCCCcceeeEEEecCc------ceEEEEecCCce--eEecccceeeeeCCCeEEEEECCCceE-
Q 041206 178 LFAGSEGGVISVWKGTFVANPFKQVASIRAPL------WFCSLSSSNDTR--WNSKEEAAVFEFCGHTTRTWNLDNLEC- 248 (371)
Q Consensus 178 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~iwd~~~~~~- 248 (371)
.+....|=.|.+|++......+..+ -++.|. -|++..|+|... +.-. +..|.|++-|++...+
T Consensus 186 t~lSaDdLrINLWnl~i~D~sFnIV-DiKP~nmeeLteVItSaeFhp~~cn~fmYS-------sSkG~Ikl~DlRq~alc 257 (460)
T COG5170 186 TLLSADDLRINLWNLEIIDGSFNIV-DIKPHNMEELTEVITSAEFHPEMCNVFMYS-------SSKGEIKLNDLRQSALC 257 (460)
T ss_pred eeeeccceeeeeccccccCCceEEE-eccCccHHHHHHHHhhcccCHhHcceEEEe-------cCCCcEEehhhhhhhhc
Confidence 4455567899999998765443333 333333 578999999653 5556 7899999999984221
Q ss_pred -----EE----------EeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC---------------------cc
Q 041206 249 -----VQ----------TLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN---------------------NA 290 (371)
Q Consensus 249 -----~~----------~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~---------------------~~ 290 (371)
+. -+.+-...|..+.|+ ++++++-. --++++||++..+. ..
T Consensus 258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDa 336 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDA 336 (460)
T ss_pred cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccc
Confidence 11 112233577888898 45666544 46899999766542 11
Q ss_pred eecceEEEEecCCCCEEEEecCCCeEEEEE
Q 041206 291 ELSSLFGMLDAEAKPVLFSSGKDSAIRLYE 320 (371)
Q Consensus 291 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd 320 (371)
........++.++ ..+++|+..+..-+|-
T Consensus 337 ifdkFeisfSgd~-~~v~sgsy~NNfgiyp 365 (460)
T COG5170 337 IFDKFEISFSGDD-KHVLSGSYSNNFGIYP 365 (460)
T ss_pred eeeeEEEEecCCc-ccccccccccceeeec
Confidence 1122222233333 3777887777666665
No 277
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=1.1e-06 Score=79.51 Aligned_cols=221 Identities=13% Similarity=-0.000 Sum_probs=120.5
Q ss_pred eEeeeCccCCeEEEEEcCCCCEE---EEEeCCC--cEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEe
Q 041206 89 LMKLNGHKKAVTNVGLPSGSNKL---YSGSRDG--RVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRV 163 (371)
Q Consensus 89 ~~~l~~h~~~V~~~~~~~~~~~l---~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 163 (371)
.+.|......+..-+|+|||+.+ ++...+| .|.+.++.+++.........
T Consensus 177 ~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g------------------------- 231 (428)
T PRK01029 177 LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG------------------------- 231 (428)
T ss_pred ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC-------------------------
Confidence 33454455667778999999752 3444443 57777888776544332211
Q ss_pred CCCCeeEEEEeCC--EEEEEe-CCC----eEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeC
Q 041206 164 NAASVNALVVNND--LLFAGS-EGG----VISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFC 234 (371)
Q Consensus 164 ~~~~v~~~~~~~~--~l~~~~-~dg----~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~ 234 (371)
.....+|+|+ .|+..+ .+| .+..|++..+... +......... .....+|+|||+ |+... ..
T Consensus 232 ---~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g-~~~~lt~~~~~~~~~p~wSPDG~~Laf~s------~~ 301 (428)
T PRK01029 232 ---NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIG-KPRRLLNEAFGTQGNPSFSPDGTRLVFVS------NK 301 (428)
T ss_pred ---CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCC-cceEeecCCCCCcCCeEECCCCCEEEEEE------CC
Confidence 1334577777 444333 222 3444666543100 2222222222 446789999996 55440 34
Q ss_pred CCe--EEEEECCC-ceEEEEeecCCCcEEEEEEc--CCeEEEEeCC---CcEEEEEccCCCCccee---cceEEEEecCC
Q 041206 235 GHT--TRTWNLDN-LECVQTLKGHSDTVTSLLFW--DEYLFSSSLD---ETIKIWLYTHTKNNAEL---SSLFGMLDAEA 303 (371)
Q Consensus 235 dg~--i~iwd~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~i~iwd~~~~~~~~~~---~~~~~~~~~~~ 303 (371)
+|. |+++++.. +.....+..+...+....|+ ++.|+..+.+ ..|.+||+...+..... .......+.++
T Consensus 302 ~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpD 381 (428)
T PRK01029 302 DGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAID 381 (428)
T ss_pred CCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCC
Confidence 554 44555542 23344454455566778888 6677765543 36899998766532111 11222334444
Q ss_pred CCEEE-EecC--CCeEEEEEcCCcceeeeecCCceEEEEEeCCC
Q 041206 304 KPVLF-SSGK--DSAIRLYELPSFKLRARIFSRREVEVDQIGPA 344 (371)
Q Consensus 304 ~~~l~-~~~~--d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~ 344 (371)
++.|+ ++.. ...|+++|+.+++........+.+...+|+|-
T Consensus 382 G~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 382 SLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCC
Confidence 44554 4433 35688899988765544445556777888874
No 278
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.89 E-value=2.5e-08 Score=79.17 Aligned_cols=154 Identities=16% Similarity=0.259 Sum_probs=107.7
Q ss_pred ccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE----EEEeCCCeeEEEeecCCEEEEec---
Q 041206 82 TTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCV----NVITNGAEIGCLISEGSWVFLGL--- 154 (371)
Q Consensus 82 ~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--- 154 (371)
......+.+.+.-|+++=.+-+.+-.++.++++..||.+.+++.+.-..+ ........-.+....++++.++.
T Consensus 75 rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~ 154 (319)
T KOG4714|consen 75 RDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGN 154 (319)
T ss_pred cccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcce
Confidence 34455566777767766555556666788999999999999998762211 11111222223334444444432
Q ss_pred ---CCcEEEEEeCCC-----------CeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEe
Q 041206 155 ---PNAVKSWRVNAA-----------SVNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSS 216 (371)
Q Consensus 155 ---~~~i~~~~~~~~-----------~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~ 216 (371)
-+..+.|+++.. .|.+++-+|. .+++|+.||.+.+||.+... .+...++.|+ ++..+-|
T Consensus 155 ~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~---~p~S~l~ahk~~i~eV~F 231 (319)
T KOG4714|consen 155 WNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA---MPVSLLKAHKAEIWEVHF 231 (319)
T ss_pred EeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc---chHHHHHHhhhhhhheec
Confidence 234455555433 6788888876 88999999999999999874 5666788898 9999999
Q ss_pred cCCc--eeEecccceeeeeCCCeEEEEECCC
Q 041206 217 SNDT--RWNSKEEAAVFEFCGHTTRTWNLDN 245 (371)
Q Consensus 217 ~~~~--~l~~~~~~~~~~~~dg~i~iwd~~~ 245 (371)
+|.+ +|+++ ++||.+.-||..+
T Consensus 232 Hpk~p~~Lft~-------sedGslw~wdas~ 255 (319)
T KOG4714|consen 232 HPKNPEHLFTC-------SEDGSLWHWDAST 255 (319)
T ss_pred cCCCchheeEe-------cCCCcEEEEcCCC
Confidence 9976 49999 9999999999875
No 279
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=5.1e-08 Score=87.94 Aligned_cols=235 Identities=12% Similarity=0.036 Sum_probs=146.6
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeC
Q 041206 96 KKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNN 175 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~ 175 (371)
.....|++|+.+..++|.|+.||.+++-.+.+...-.....-.....+. .-+..+-|++.|.-+.|+.
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLs------------mNQtLeGH~~sV~vvTWNe 81 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLS------------MNQTLEGHNASVMVVTWNE 81 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccc------------hhhhhccCcceEEEEEecc
Confidence 3467899999999999999999999999987654322211100000000 0112344677888999988
Q ss_pred C--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEE-E
Q 041206 176 D--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECV-Q 250 (371)
Q Consensus 176 ~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~-~ 250 (371)
+ .|-+...+|-|.+|-+-.+.-..+.+ -.... -|.+++|..||. +... ..||.|.+=.+..++.- +
T Consensus 82 ~~QKLTtSDt~GlIiVWmlykgsW~EEMi--NnRnKSvV~SmsWn~dG~kIcIv-------YeDGavIVGsvdGNRIwgK 152 (1189)
T KOG2041|consen 82 NNQKLTTSDTSGLIIVWMLYKGSWCEEMI--NNRNKSVVVSMSWNLDGTKICIV-------YEDGAVIVGSVDGNRIWGK 152 (1189)
T ss_pred ccccccccCCCceEEEEeeecccHHHHHh--hCcCccEEEEEEEcCCCcEEEEE-------EccCCEEEEeeccceecch
Confidence 7 78888889999999988773211111 11122 789999999995 7666 67777766555432221 2
Q ss_pred EeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCC----Cc--------------ceecceE-----EEEecCCCC
Q 041206 251 TLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTK----NN--------------AELSSLF-----GMLDAEAKP 305 (371)
Q Consensus 251 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~----~~--------------~~~~~~~-----~~~~~~~~~ 305 (371)
.+++. ....+.|+ .+.++.+-.+|.+.+||-...- +. ..+..+. ....+|+.+
T Consensus 153 eLkg~--~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP 230 (1189)
T KOG2041|consen 153 ELKGQ--LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP 230 (1189)
T ss_pred hcchh--eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC
Confidence 22221 22356676 2455566677889999832211 00 0000111 113456677
Q ss_pred EEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCCC
Q 041206 306 VLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDAS 353 (371)
Q Consensus 306 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~d 353 (371)
.|+.+..+|.+.+..-.+......+...-.+..+.|+++| .|+.++.|
T Consensus 231 ~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 231 RLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred EEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCc
Confidence 8999999999998765554433344445678899999999 88888754
No 280
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.87 E-value=4.9e-05 Score=67.06 Aligned_cols=294 Identities=13% Similarity=0.102 Sum_probs=158.6
Q ss_pred ceeeccCcccccceeEEEE-EeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCC
Q 041206 20 ETMMSDDDDLMKGRAEERE-EMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKA 98 (371)
Q Consensus 20 ~~l~~~~~d~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 98 (371)
+.+.+..-|...+++...- ..-......+++++.+.++-.........+.+..+....+ ....+.+.........
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~----~g~L~~~~~~~~~g~~ 88 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD----TGTLTLLNSVPSGGSS 88 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT----TTEEEEEEEEEESSSC
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCC----cceeEEeeeeccCCCC
Confidence 3343333344444443221 1233444455666655543322221125667777774322 0233445555534456
Q ss_pred eEEEEEcCCCCEEEEEe-CCCcEEEEECCC-CceEEE---EeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEE
Q 041206 99 VTNVGLPSGSNKLYSGS-RDGRVSVWDRDS-GRCVNV---ITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVV 173 (371)
Q Consensus 99 V~~~~~~~~~~~l~s~~-~dg~v~iwd~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~ 173 (371)
...++++|++++|+++. .+|+|.++++.. |..... +..... .++.. .-......++.+
T Consensus 89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~----g~~~~-------------rq~~~h~H~v~~ 151 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS----GPNPD-------------RQEGPHPHQVVF 151 (345)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE----ESSTT-------------TTSSTCEEEEEE
T ss_pred cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC----CCccc-------------ccccccceeEEE
Confidence 67899999999999987 489999999987 433322 111000 00000 001124788899
Q ss_pred eCC--EEEEEe-CCCeEEEEeccCCCCcceeeEEEecCc--ceEEEEecCCce--eEecccceeeeeCCCeEEEEECC--
Q 041206 174 NND--LLFAGS-EGGVISVWKGTFVANPFKQVASIRAPL--WFCSLSSSNDTR--WNSKEEAAVFEFCGHTTRTWNLD-- 244 (371)
Q Consensus 174 ~~~--~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~iwd~~-- 244 (371)
+|+ ++++.. ....|.+|++......+.....+.... ..+.++|+|+++ +++. -.++.|.++++.
T Consensus 152 ~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~-------e~s~~v~v~~~~~~ 224 (345)
T PF10282_consen 152 SPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN-------ELSNTVSVFDYDPS 224 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEE-------TTTTEEEEEEEETT
T ss_pred CCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEec-------CCCCcEEEEeeccc
Confidence 988 555554 346899999987643333344444444 889999999986 4555 678899999988
Q ss_pred Cce--EEEEeecC------CCcEEEEEEc--CCeEEEEe-CCCcEEEEEccCC-CCcceec-------ceEEEEecCCCC
Q 041206 245 NLE--CVQTLKGH------SDTVTSLLFW--DEYLFSSS-LDETIKIWLYTHT-KNNAELS-------SLFGMLDAEAKP 305 (371)
Q Consensus 245 ~~~--~~~~~~~~------~~~v~~~~~~--~~~l~s~~-~dg~i~iwd~~~~-~~~~~~~-------~~~~~~~~~~~~ 305 (371)
+++ .++.+... ......+.++ +++|+++. ....|.+|++... .....+. .-..+...++++
T Consensus 225 ~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~ 304 (345)
T PF10282_consen 225 DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGR 304 (345)
T ss_dssp TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSS
T ss_pred CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCC
Confidence 443 23333211 1256778888 66665544 5678999998432 2111111 122233344444
Q ss_pred EEEEe-cCCCeEEEEEc--CCcceeeeec--CCceEEEEEe
Q 041206 306 VLFSS-GKDSAIRLYEL--PSFKLRARIF--SRREVEVDQI 341 (371)
Q Consensus 306 ~l~~~-~~d~~i~iwd~--~~~~~~~~~~--~~~~v~~~~~ 341 (371)
+|+++ ..++.|.+|++ .++.+...-. .-....|+.|
T Consensus 305 ~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 305 YLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 66555 56789999976 4555443332 2344556554
No 281
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.86 E-value=1.4e-06 Score=69.78 Aligned_cols=226 Identities=13% Similarity=-0.031 Sum_probs=140.4
Q ss_pred EEEEEcC-----CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCC---eeEE
Q 041206 100 TNVGLPS-----GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAAS---VNAL 171 (371)
Q Consensus 100 ~~~~~~~-----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---v~~~ 171 (371)
+.+.|-| ...+||.|+.-|...+|...+.+....+- |.+... +...
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~c--------------------------d~snn~v~~~~r~ 124 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQC--------------------------DVSNNDVTLVKRY 124 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeee--------------------------cccccchhhhhhh
Confidence 3455555 34589999999999999988665332221 111111 1222
Q ss_pred EEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCc-eE
Q 041206 172 VVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNL-EC 248 (371)
Q Consensus 172 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~-~~ 248 (371)
+-+.-.+..++.|.++++.++..+. ........+ .+.++++++|++ +++. +....|..|.+... +.
T Consensus 125 cd~~~~~~i~sndht~k~~~~~~~s----~~~~~h~~~~~~ns~~~snd~~~~~~V-------gds~~Vf~y~id~~sey 193 (344)
T KOG4532|consen 125 CDLKFPLNIASNDHTGKTMVVSGDS----NKFAVHNQNLTQNSLHYSNDPSWGSSV-------GDSRRVFRYAIDDESEY 193 (344)
T ss_pred cccccceeeccCCcceeEEEEecCc----ccceeeccccceeeeEEcCCCceEEEe-------cCCCcceEEEeCCccce
Confidence 2223367788889999999887762 222222222 588999999998 5666 78889999988642 22
Q ss_pred -EE-EeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCC---------CcceecceEEEEecCCCC--EEEEecCC
Q 041206 249 -VQ-TLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTK---------NNAELSSLFGMLDAEAKP--VLFSSGKD 313 (371)
Q Consensus 249 -~~-~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~--~l~~~~~d 313 (371)
+. ....-++.-.+..|+ +..+|++..||++.|||++... ...+-.++..+.+...+. +|+..-.-
T Consensus 194 ~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhf 273 (344)
T KOG4532|consen 194 IENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHF 273 (344)
T ss_pred eeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCc
Confidence 22 222334445677777 6799999999999999976543 122334555555543332 56666667
Q ss_pred CeEEEEEcCCcceeeeecC---------CceEEEEEeCCCC-eEEeeCCCCcEEEEEccc
Q 041206 314 SAIRLYELPSFKLRARIFS---------RREVEVDQIGPAG-LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 314 ~~i~iwd~~~~~~~~~~~~---------~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~ 363 (371)
+.+.+.|+++++..+.+.- ...+....|+.++ .+...+++ .+.=|++.+
T Consensus 274 s~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 274 SRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred ceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch-hhheeeccc
Confidence 8999999999875554431 2447777888877 44444433 344455543
No 282
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.84 E-value=1e-07 Score=80.32 Aligned_cols=151 Identities=15% Similarity=0.162 Sum_probs=101.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce----EEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEE
Q 041206 98 AVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRC----VNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVV 173 (371)
Q Consensus 98 ~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~ 173 (371)
.+..+..++.+++||.+..+....++++..... ........ .-+++.+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~----------------------------~~~ai~~ 115 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK----------------------------RPTAISF 115 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc----------------------------Ccceeee
Confidence 344555678888898888888777777664432 11111110 1222333
Q ss_pred eCC--EEEEEeCCC---eEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCc
Q 041206 174 NND--LLFAGSEGG---VISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNL 246 (371)
Q Consensus 174 ~~~--~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~ 246 (371)
..+ ...++..-| .+.+|....+ +...+-+|- .++.++++||++ ++++ ..|..|++-....-
T Consensus 116 ~~~~~sv~v~dkagD~~~~di~s~~~~-----~~~~~lGhvSml~dVavS~D~~~Iita-------DRDEkIRvs~ypa~ 183 (390)
T KOG3914|consen 116 IREDTSVLVADKAGDVYSFDILSADSG-----RCEPILGHVSMLLDVAVSPDDQFIITA-------DRDEKIRVSRYPAT 183 (390)
T ss_pred eeccceEEEEeecCCceeeeeeccccc-----CcchhhhhhhhhheeeecCCCCEEEEe-------cCCceEEEEecCcc
Confidence 222 333333333 4444444432 344566777 999999999997 8899 99999999777655
Q ss_pred eEEEEee-cCCCcEEEEEEc-CCeEEEEeCCCcEEEEEccCCCC
Q 041206 247 ECVQTLK-GHSDTVTSLLFW-DEYLFSSSLDETIKIWLYTHTKN 288 (371)
Q Consensus 247 ~~~~~~~-~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~ 288 (371)
-.+..|. ||+..|..++.- +..|++++.|+++++||++..+.
T Consensus 184 f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 184 FVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred cchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCCc
Confidence 5555544 799999999998 55679999999999999888775
No 283
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.82 E-value=3.7e-06 Score=76.70 Aligned_cols=183 Identities=13% Similarity=0.004 Sum_probs=104.3
Q ss_pred CeeEEEEeCC--EEEEEeCC---CeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eE-ecccceeeeeCCC--
Q 041206 167 SVNALVVNND--LLFAGSEG---GVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WN-SKEEAAVFEFCGH-- 236 (371)
Q Consensus 167 ~v~~~~~~~~--~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~-~~~~~~~~~~~dg-- 236 (371)
.+....|+|+ .|+..+.+ ..|.+||+.++ +. ..+.... .+....|+|||+ ++ +. ..++
T Consensus 200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g----~~-~~l~~~~g~~~~~~~SpDG~~la~~~-------~~~g~~ 267 (430)
T PRK00178 200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG----RR-EQITNFEGLNGAPAWSPDGSKLAFVL-------SKDGNP 267 (430)
T ss_pred ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC----CE-EEccCCCCCcCCeEECCCCCEEEEEE-------ccCCCc
Confidence 4677888888 55554433 36889999876 22 2222223 455789999996 54 34 3444
Q ss_pred eEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEe-CCC--cEEEEEccCCCCccee---c-ceEEEEecCCCCEE
Q 041206 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSS-LDE--TIKIWLYTHTKNNAEL---S-SLFGMLDAEAKPVL 307 (371)
Q Consensus 237 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg--~i~iwd~~~~~~~~~~---~-~~~~~~~~~~~~~l 307 (371)
.|++||+.+++.. .+..+........|+ ++.|+..+ .++ .|.++++...+..... . .....+++++. .+
T Consensus 268 ~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~-~i 345 (430)
T PRK00178 268 EIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGK-TL 345 (430)
T ss_pred eEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCC-EE
Confidence 6888999987654 444455556667887 45665444 344 4666666544321111 0 11122444444 55
Q ss_pred EEec-CCC--eEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEE-eeCCCC--cEEEEEcccc
Q 041206 308 FSSG-KDS--AIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFF-PGDASG--SVGVWKWLLA 364 (371)
Q Consensus 308 ~~~~-~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~-~~~~dg--~i~iw~~~~~ 364 (371)
+..+ .++ .|.+||+.+++... +..........|+||| .++ +...+| .|.++++...
T Consensus 346 ~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 346 VMVHRQDGNFHVAAQDLQRGSVRI-LTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred EEEEccCCceEEEEEECCCCCEEE-ccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 5444 333 58889998875432 2222222356899999 444 443333 4666666543
No 284
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.78 E-value=4.4e-06 Score=76.20 Aligned_cols=184 Identities=14% Similarity=0.038 Sum_probs=101.3
Q ss_pred CeeEEEEeCC--EEEEEeC-C--CeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eE-ecccceeeeeCCC--e
Q 041206 167 SVNALVVNND--LLFAGSE-G--GVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WN-SKEEAAVFEFCGH--T 237 (371)
Q Consensus 167 ~v~~~~~~~~--~l~~~~~-d--g~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~~~~~~~~dg--~ 237 (371)
.+.+..|+|+ .|+..+. + ..|.+||+.++.. +.+..+.+ .....+|+|||+ ++ +. +.++ .
T Consensus 219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g--~~~~~~wSPDG~~La~~~-------~~~g~~~ 287 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPG--INGAPRFSPDGKKLALVL-------SKDGQPE 287 (448)
T ss_pred cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCC--CcCCeeECCCCCEEEEEE-------eCCCCeE
Confidence 4677888888 5554433 3 3588889887621 12222221 345789999996 54 44 5555 4
Q ss_pred EEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEe-CCCc--EEEEEccCCCCccee----cceEEEEecCCCCEEE
Q 041206 238 TRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSS-LDET--IKIWLYTHTKNNAEL----SSLFGMLDAEAKPVLF 308 (371)
Q Consensus 238 i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~--i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~l~ 308 (371)
|+++|+.+++.. .+..+........|+ ++.|+..+ .++. |.++|+...+..... ......+++++. +++
T Consensus 288 Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~-~l~ 365 (448)
T PRK04792 288 IYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGR-SMI 365 (448)
T ss_pred EEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCC-EEE
Confidence 888899877654 444455556677888 55665444 3444 555565444321110 011223455555 554
Q ss_pred Ee-cCCC--eEEEEEcCCcceeeeecCCceEEEEEeCCCC-e-EEeeCCCCc--EEEEEcccc
Q 041206 309 SS-GKDS--AIRLYELPSFKLRARIFSRREVEVDQIGPAG-L-FFPGDASGS--VGVWKWLLA 364 (371)
Q Consensus 309 ~~-~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~-l~~~~~dg~--i~iw~~~~~ 364 (371)
.. ..++ .|.++|+.+++... +..........|+||| . +++...+|. +++++....
T Consensus 366 ~~~~~~g~~~I~~~dl~~g~~~~-lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 366 MVNRTNGKFNIARQDLETGAMQV-LTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred EEEecCCceEEEEEECCCCCeEE-ccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 44 3344 45667887765432 2221122345799999 4 444444444 666676543
No 285
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.78 E-value=3.5e-05 Score=66.77 Aligned_cols=209 Identities=13% Similarity=0.064 Sum_probs=123.3
Q ss_pred CcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEE-EEe---------CCC
Q 041206 118 GRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLF-AGS---------EGG 185 (371)
Q Consensus 118 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~-~~~---------~dg 185 (371)
++|.+.|..+++.+.++..+.. -..+ ++|+ .++ +.+ .+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~----------------------------P~~~-~spDg~~lyva~~~~~R~~~G~~~d 77 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL----------------------------PNPV-VASDGSFFAHASTVYSRIARGKRTD 77 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC----------------------------Ccee-ECCCCCEEEEEeccccccccCCCCC
Confidence 8899999999999988886432 1122 4444 333 333 578
Q ss_pred eEEEEeccCCCCcceeeEEEecCc--------ceEEEEecCCce-eEecccceeeee-C-CCeEEEEECCCceEEEEeec
Q 041206 186 VISVWKGTFVANPFKQVASIRAPL--------WFCSLSSSNDTR-WNSKEEAAVFEF-C-GHTTRTWNLDNLECVQTLKG 254 (371)
Q Consensus 186 ~v~iwd~~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~-l~~~~~~~~~~~-~-dg~i~iwd~~~~~~~~~~~~ 254 (371)
.|.+||..+. +.+..+.... ....++++|||+ ++.. . . +..|.+.|+.+++.+.++.-
T Consensus 78 ~V~v~D~~t~----~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~-------n~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 78 YVEVIDPQTH----LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFY-------QFSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred EEEEEECccC----cEEeEEccCCCchhhccCccceEEECCCCCEEEEe-------cCCCCCEEEEEECCCCcEEEEEeC
Confidence 9999999998 6776666422 344889999997 5544 3 3 79999999999999988875
Q ss_pred CCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCCcceec-c----------eEEEEecCCCCEEEEecCCCeEEEEEcCC
Q 041206 255 HSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKNNAELS-S----------LFGMLDAEAKPVLFSSGKDSAIRLYELPS 323 (371)
Q Consensus 255 ~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~----------~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 323 (371)
.. ...-....+.....-+.||......+.........+ . ....+.+.++.++++..+ |.|.+.|+..
T Consensus 147 p~-~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~ 224 (352)
T TIGR02658 147 PD-CYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSS 224 (352)
T ss_pred CC-CcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCC
Confidence 33 222222233333334445544443322211100000 0 000124435556666666 9999999644
Q ss_pred c-----ceeeeec--------CCceEEEEEeCCCC-eEEe-e---------CCCCcEEEEEccccceec
Q 041206 324 F-----KLRARIF--------SRREVEVDQIGPAG-LFFP-G---------DASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 324 ~-----~~~~~~~--------~~~~v~~~~~s~~~-~l~~-~---------~~dg~i~iw~~~~~~~~~ 368 (371)
. +....+. ..+...-++++|++ .++. . ...+.|.++|..+.+..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~ 293 (352)
T TIGR02658 225 GDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLR 293 (352)
T ss_pred CcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEE
Confidence 2 2222211 12334459999998 4444 2 122589999998876554
No 286
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.78 E-value=2.8e-08 Score=82.01 Aligned_cols=153 Identities=18% Similarity=0.137 Sum_probs=110.8
Q ss_pred EEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCc-eeEecccceeeeeCCCeEEEEECCCc-----eEEE
Q 041206 177 LLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDT-RWNSKEEAAVFEFCGHTTRTWNLDNL-----ECVQ 250 (371)
Q Consensus 177 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~~~~~~~~dg~i~iwd~~~~-----~~~~ 250 (371)
+-++.+.+-.|-+-|++++ ..+.+.....|.++.|...+ .++.| ...|.|..+|++.+ .+.+
T Consensus 226 yhfs~G~sqqv~L~nvetg-----~~qsf~sksDVfAlQf~~s~nLv~~G-------cRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 226 YHFSVGLSQQVLLTNVETG-----HQQSFQSKSDVFALQFAGSDNLVFNG-------CRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred eeecccccceeEEEEeecc-----cccccccchhHHHHHhcccCCeeEec-------ccCCcEEEEEeeecccCCCcceE
Confidence 3366667778888899886 34455533388888888855 47888 99999999999864 4455
Q ss_pred EeecCCCcEEEEEE---cCCeEEEEeCCCcEEEEEccCCCCc-------ceecce---EEEEecCCCCEEEEecCCCeEE
Q 041206 251 TLKGHSDTVTSLLF---WDEYLFSSSLDETIKIWLYTHTKNN-------AELSSL---FGMLDAEAKPVLFSSGKDSAIR 317 (371)
Q Consensus 251 ~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~-------~~~~~~---~~~~~~~~~~~l~~~~~d~~i~ 317 (371)
.+. |...|+++.. ++++|++.+.+|+|++||++..+.. ++++.. ..... +.+..+++++.|-..|
T Consensus 294 rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~-~eeg~I~s~GdDcytR 371 (425)
T KOG2695|consen 294 RLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVK-EEEGSIFSVGDDCYTR 371 (425)
T ss_pred EEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccc-cccceEEEccCeeEEE
Confidence 555 8888888754 5889999999999999998876652 222211 11223 3344888899999999
Q ss_pred EEEcCCcceeeeecC-----CceEEEEEeCC
Q 041206 318 LYELPSFKLRARIFS-----RREVEVDQIGP 343 (371)
Q Consensus 318 iwd~~~~~~~~~~~~-----~~~v~~~~~s~ 343 (371)
||.++.+.++.++.. ...+.+++|..
T Consensus 372 iWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 372 IWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred EEecccCceeeccCCCCccccccccceehhc
Confidence 999999999888774 23455666643
No 287
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=1.4e-06 Score=79.58 Aligned_cols=225 Identities=12% Similarity=0.028 Sum_probs=155.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC-
Q 041206 98 AVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND- 176 (371)
Q Consensus 98 ~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~- 176 (371)
.-.++.|+|.| ++|-|+. ..|.+-|..+-+.+..+..+.+ .|+.+.|.|.
T Consensus 17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s---------------------------~V~~VrWap~~ 67 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQS---------------------------AVTSVRWAPAP 67 (1062)
T ss_pred cccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCcc---------------------------ceeEEEeccCC
Confidence 36688899987 5555554 5699999999998888886543 4666666432
Q ss_pred -------------EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecC---Cce--eEecccceeeeeCCCe
Q 041206 177 -------------LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSN---DTR--WNSKEEAAVFEFCGHT 237 (371)
Q Consensus 177 -------------~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~---~~~--l~~~~~~~~~~~~dg~ 237 (371)
.++++...|.|.+||.... ..+..+..+. ++..++|-+ +.+ |++- .....
T Consensus 68 ~p~~llS~~~~~lliAsaD~~GrIil~d~~~~----s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaI-------h~ss~ 136 (1062)
T KOG1912|consen 68 SPRDLLSPSSSQLLIASADISGRIILVDFVLA----SVINWLSHSNDSVQDLCWVPARDDSRDVLLAI-------HGSST 136 (1062)
T ss_pred CchhccCccccceeEEeccccCcEEEEEehhh----hhhhhhcCCCcchhheeeeeccCcchheeEEe-------cCCcE
Confidence 6788888999999999988 6677777887 888998876 333 5555 67889
Q ss_pred EEEEECCCceEEEEeecCCCcEEEEEEc---CCeEEEEeCCCcEEEEEccCCCCc-c-----------------------
Q 041206 238 TRTWNLDNLECVQTLKGHSDTVTSLLFW---DEYLFSSSLDETIKIWLYTHTKNN-A----------------------- 290 (371)
Q Consensus 238 i~iwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~-~----------------------- 290 (371)
+.+|+..+|+.+...........|+.++ ...+..-+..|.+.+-+.-...+. .
T Consensus 137 lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at 216 (1062)
T KOG1912|consen 137 LVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETAT 216 (1062)
T ss_pred EEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhc
Confidence 9999999999988777666667778776 456665566666666552111100 0
Q ss_pred ---e----------ecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC---eEEeeCCC
Q 041206 291 ---E----------LSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG---LFFPGDAS 353 (371)
Q Consensus 291 ---~----------~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~---~l~~~~~d 353 (371)
. ..+....+.+.-.+.++. .....+.++|++-..++..+. ..+.+.-+.+-|++ .|++.-.|
T Consensus 217 ~ns~ts~~~sa~fity~a~faf~p~~rn~lfi-~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~n 295 (1062)
T KOG1912|consen 217 GNSTTSTPASAYFITYCAQFAFSPHWRNILFI-TFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSN 295 (1062)
T ss_pred cccccCCCcchhHHHHHHhhhcChhhhceEEE-EeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecC
Confidence 0 000111123333333333 345679999999888887776 45566677788877 89999999
Q ss_pred CcEEEEEccc
Q 041206 354 GSVGVWKWLL 363 (371)
Q Consensus 354 g~i~iw~~~~ 363 (371)
|.+.+|--+.
T Consensus 296 G~ltirvrk~ 305 (1062)
T KOG1912|consen 296 GRLTIRVRKE 305 (1062)
T ss_pred CeEEEEEeec
Confidence 9999998765
No 288
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.71 E-value=2e-05 Score=64.19 Aligned_cols=183 Identities=15% Similarity=0.159 Sum_probs=110.3
Q ss_pred EEEEEeCCCeEEEEeccCCCCcc-eeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEee
Q 041206 177 LLFAGSEGGVISVWKGTFVANPF-KQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLK 253 (371)
Q Consensus 177 ~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~ 253 (371)
.+++.-.|..|.|=..+..-... ...+..+... .-+.++|+||+. |+.+ ...|+|++||+... .+..+.
T Consensus 10 k~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a-------~S~G~i~vfdl~g~-~lf~I~ 81 (282)
T PF15492_consen 10 KLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYA-------ESTGTIRVFDLMGS-ELFVIP 81 (282)
T ss_pred cEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEE-------cCCCeEEEEecccc-eeEEcC
Confidence 34444455556555444332111 1112222223 678899999997 7777 88999999999853 333443
Q ss_pred cC-------CCcEEEEEEc--------CCeEEEEeCCCcEEEEEccCCC--C----------cceecceEEEEecCCCCE
Q 041206 254 GH-------SDTVTSLLFW--------DEYLFSSSLDETIKIWLYTHTK--N----------NAELSSLFGMLDAEAKPV 306 (371)
Q Consensus 254 ~~-------~~~v~~~~~~--------~~~l~s~~~dg~i~iwd~~~~~--~----------~~~~~~~~~~~~~~~~~~ 306 (371)
.. ..+|..+.|- ...|+.-..+|.++-|-+.... . ......+..+.+.+..++
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~L 161 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRL 161 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCE
Confidence 21 2467777775 1256667778887777753321 1 111235566666666667
Q ss_pred EEEecCC-C----------eEEEEEcCCcceeee-------------------------ec-----CCceEEEEEeCCCC
Q 041206 307 LFSSGKD-S----------AIRLYELPSFKLRAR-------------------------IF-----SRREVEVDQIGPAG 345 (371)
Q Consensus 307 l~~~~~d-~----------~i~iwd~~~~~~~~~-------------------------~~-----~~~~v~~~~~s~~~ 345 (371)
|++|+.. . -+.-|.+-++.+-.. +. ....|..|..||||
T Consensus 162 LlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg 241 (282)
T PF15492_consen 162 LLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDG 241 (282)
T ss_pred EEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCC
Confidence 7766531 1 255665533211100 00 14678999999999
Q ss_pred -eEEeeCCCCcEEEEEcccccee
Q 041206 346 -LFFPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 346 -~l~~~~~dg~i~iw~~~~~~~~ 367 (371)
.||+...+|.|.+|++.+-+++
T Consensus 242 ~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 242 SLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred CEEEEEEcCCeEEEEecCcchhh
Confidence 9999999999999999765443
No 289
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=9.5e-06 Score=73.48 Aligned_cols=194 Identities=10% Similarity=-0.035 Sum_probs=103.0
Q ss_pred eeEEEEeCC--E--E-EEEeCCC--eEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eEecccceeeeeCCCeEE
Q 041206 168 VNALVVNND--L--L-FAGSEGG--VISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFCGHTTR 239 (371)
Q Consensus 168 v~~~~~~~~--~--l-~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~ 239 (371)
..+-.|+|+ . + ++...+| .|.+.++.++.. +.+..+.+ .....+|+|||+ |+..... .+..+..+.
T Consensus 187 ~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~lt~~~g--~~~~p~wSPDG~~Laf~s~~--~g~~di~~~ 260 (428)
T PRK01029 187 SITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKILALQG--NQLMPTFSPRKKLLAFISDR--YGNPDLFIQ 260 (428)
T ss_pred cccceEccCCCceEEEEEEccCCCceEEEEECCCCCc--eEeecCCC--CccceEECCCCCEEEEEECC--CCCcceeEE
Confidence 445578887 2 2 2443343 577778877622 23333333 445689999995 5433000 001133344
Q ss_pred EEECCC---ceEEEEeecCCCcEEEEEEc--CCeEEEEe-CCCcEEEEEccCC--C-Cccee----cceEEEEecCCCCE
Q 041206 240 TWNLDN---LECVQTLKGHSDTVTSLLFW--DEYLFSSS-LDETIKIWLYTHT--K-NNAEL----SSLFGMLDAEAKPV 306 (371)
Q Consensus 240 iwd~~~---~~~~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~iwd~~~~--~-~~~~~----~~~~~~~~~~~~~~ 306 (371)
.|++.. ++..+....+.......+|+ ++.|+..+ .+|...+|.+... . ....+ .......++++++.
T Consensus 261 ~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~ 340 (428)
T PRK01029 261 SFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKK 340 (428)
T ss_pred EeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCE
Confidence 577765 23333333333344567888 56666554 5676666654321 1 11111 11122233444445
Q ss_pred EEEec-CC--CeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEE-eeCC--CCcEEEEEcccccee
Q 041206 307 LFSSG-KD--SAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFF-PGDA--SGSVGVWKWLLAEQQ 367 (371)
Q Consensus 307 l~~~~-~d--~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~-~~~~--dg~i~iw~~~~~~~~ 367 (371)
|+..+ .+ ..|.+||+.+++..........+....|+||| .|+ +... ...|+++++..++..
T Consensus 341 Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 341 IAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred EEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 55443 32 46999999988765433334466789999999 444 4433 356888888766543
No 290
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.69 E-value=3.6e-07 Score=74.63 Aligned_cols=190 Identities=16% Similarity=0.252 Sum_probs=124.4
Q ss_pred CeeEEEEeCC--EEEEEeCCCeEEEEeccCCC-CcceeeEEEecCc-------------ceEEEEecCCc-e--eEeccc
Q 041206 167 SVNALVVNND--LLFAGSEGGVISVWKGTFVA-NPFKQVASIRAPL-------------WFCSLSSSNDT-R--WNSKEE 227 (371)
Q Consensus 167 ~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~-------------~v~~~~~~~~~-~--l~~~~~ 227 (371)
.|+++.|... ++++|...|.|.+|.-+... +.++.+..++.|. .|..+.|..++ + ++..
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls-- 105 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS-- 105 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe--
Confidence 5888888876 89999888999999765442 2223333444442 56788887765 2 6666
Q ss_pred ceeeeeCCCeEEEEECCCce-------------------------------------EE-----EEe-ecCCCcEEEEEE
Q 041206 228 AAVFEFCGHTTRTWNLDNLE-------------------------------------CV-----QTL-KGHSDTVTSLLF 264 (371)
Q Consensus 228 ~~~~~~~dg~i~iwd~~~~~-------------------------------------~~-----~~~-~~~~~~v~~~~~ 264 (371)
+.|.+|++|-+.... .+ +.+ ..|.-.|.++.|
T Consensus 106 -----tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~ 180 (460)
T COG5170 106 -----TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF 180 (460)
T ss_pred -----cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee
Confidence 899999999886320 00 111 346667888888
Q ss_pred c-CCeEEEEeCCCcEEEEEccCCCCccee------------cceEEE-EecCCCCEEEEecCCCeEEEEEcCCccee---
Q 041206 265 W-DEYLFSSSLDETIKIWLYTHTKNNAEL------------SSLFGM-LDAEAKPVLFSSGKDSAIRLYELPSFKLR--- 327 (371)
Q Consensus 265 ~-~~~l~s~~~dg~i~iwd~~~~~~~~~~------------~~~~~~-~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--- 327 (371)
+ +...+..+.|-.|.+|++......-.+ ..++.. +.|.....+.-.+..|.|++-|++...+.
T Consensus 181 NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 181 NSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred cCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 8 445555567888999997766541111 111111 44444556777788899999999853211
Q ss_pred ---eeec-----C------CceEEEEEeCCCC-eEEeeCCCCcEEEEEcccc
Q 041206 328 ---ARIF-----S------RREVEVDQIGPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 328 ---~~~~-----~------~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
.+.. + ...|..+.|+|+| ++++-+. -+|+|||+...
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 1111 0 4678899999999 7776654 59999999754
No 291
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=6.3e-08 Score=79.96 Aligned_cols=131 Identities=20% Similarity=0.201 Sum_probs=97.6
Q ss_pred EEEecCCcEEEEEeCCC---------CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcc-eeeEEEecCcceEEEEec
Q 041206 150 VFLGLPNAVKSWRVNAA---------SVNALVVNND--LLFAGSEGGVISVWKGTFVANPF-KQVASIRAPLWFCSLSSS 217 (371)
Q Consensus 150 ~~~~~~~~i~~~~~~~~---------~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~ 217 (371)
+.+|.+..+.+-++.++ .|.++.|... +++.|+.+|.|..+|++...+.. .+...+-....|+++..-
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~L 307 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQIL 307 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhh
Confidence 44566777777777766 6777777653 99999999999999998763221 233333333388888876
Q ss_pred C-Cc-eeEecccceeeeeCCCeEEEEECCCceE---EEEeecCCCcEEEEEEc----CCeEEEEeCCCcEEEEEccCCC
Q 041206 218 N-DT-RWNSKEEAAVFEFCGHTTRTWNLDNLEC---VQTLKGHSDTVTSLLFW----DEYLFSSSLDETIKIWLYTHTK 287 (371)
Q Consensus 218 ~-~~-~l~~~~~~~~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~iwd~~~~~ 287 (371)
. ++ .|++. +.+|+|++||++--++ ++++.+|...-.-+-+. +..+++++.|...|||.++...
T Consensus 308 q~s~q~LmaS-------~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 308 QFSQQKLMAS-------DMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred ccccceEeec-------cCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 6 44 47888 9999999999987666 88999997755555554 4688899999999999988655
No 292
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=1.7e-05 Score=69.97 Aligned_cols=256 Identities=10% Similarity=0.106 Sum_probs=151.4
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC-eeEEEeecCCEEEEec------------CCcEEEEEeCCC
Q 041206 100 TNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGA-EIGCLISEGSWVFLGL------------PNAVKSWRVNAA 166 (371)
Q Consensus 100 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------~~~i~~~~~~~~ 166 (371)
+-+.|||.|.||+|--..| |.+|--.+-..++.+.++. ....+++..++|++-+ ...+.|||+.++
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence 5678999999999998877 9999887777777777654 4556677888888732 257999999998
Q ss_pred Ce--------------eEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccce
Q 041206 167 SV--------------NALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAA 229 (371)
Q Consensus 167 ~v--------------~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~ 229 (371)
.. .-+.|+.+ ++|--.. ..|.||+.... .++..-.... .|....|+|.+.+++--..-
T Consensus 293 ~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf----~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 293 LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSF----MLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred chhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCce----eeecccccCCccccCcccCCCcceEEEEccc
Confidence 21 12355555 5554444 67889987653 2222211222 78889999977633210000
Q ss_pred eeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEE----------eCCCcEEEEEccCCCCccee----c
Q 041206 230 VFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSS----------SLDETIKIWLYTHTKNNAEL----S 293 (371)
Q Consensus 230 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~----------~~dg~i~iwd~~~~~~~~~~----~ 293 (371)
....-..+.+-.+.+++.+++-+-|+-.=..+.|. +++|+.- +.-..+.|+.++...-.-.. .
T Consensus 368 -~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke 446 (698)
T KOG2314|consen 368 -TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKE 446 (698)
T ss_pred -ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecch
Confidence 00112345666666666666554443222233443 5666532 11223556665554421111 1
Q ss_pred -ceEEEEecCCCCEEEEecC--CCeEEEEEcCCc----ceeeeecCCceEEEEEeCCCC-eEEee---CCCCcEEEEEcc
Q 041206 294 -SLFGMLDAEAKPVLFSSGK--DSAIRLYELPSF----KLRARIFSRREVEVDQIGPAG-LFFPG---DASGSVGVWKWL 362 (371)
Q Consensus 294 -~~~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~----~~~~~~~~~~~v~~~~~s~~~-~l~~~---~~dg~i~iw~~~ 362 (371)
-+...+.|.+.++.+..+. ..++.+|.+++. +++..+ .....+.+.|+|.| +++.+ |..|.+.++|..
T Consensus 447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~-dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL-DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh-cccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 2333355555544333333 357899988742 222222 24677899999999 44433 468899999987
Q ss_pred c
Q 041206 363 L 363 (371)
Q Consensus 363 ~ 363 (371)
-
T Consensus 526 ~ 526 (698)
T KOG2314|consen 526 Y 526 (698)
T ss_pred h
Confidence 4
No 293
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.66 E-value=1.2e-05 Score=70.10 Aligned_cols=245 Identities=13% Similarity=0.066 Sum_probs=147.6
Q ss_pred EeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC-eeEEEeecCCEEEEecCCcEEEEEeCCCCe
Q 041206 90 MKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGA-EIGCLISEGSWVFLGLPNAVKSWRVNAASV 168 (371)
Q Consensus 90 ~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v 168 (371)
..+..-.-++..+++||.|.+|++....| |.+|.......+..+.+.. .-..+.+.+++|.+-.+..++
T Consensus 26 ~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~--------- 95 (561)
T COG5354 26 TRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPII--------- 95 (561)
T ss_pred ccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeeecCCceecccCcccceeeeeccCCcc---------
Confidence 33443566899999999999999988766 9999988877666666543 222334455555544333322
Q ss_pred eEEEEeCC-EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-c--eE-EEEecCCceeEecccceeeeeCCCeEEEEEC
Q 041206 169 NALVVNND-LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-W--FC-SLSSSNDTRWNSKEEAAVFEFCGHTTRTWNL 243 (371)
Q Consensus 169 ~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~--v~-~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~ 243 (371)
.|+ ...--..++.+.+||+.++ ..+..+.... + .. -+.|+-+.++++- -....++|+++
T Consensus 96 -----~pe~e~sp~~~~n~~~vwd~~sg----~iv~sf~~~~q~~~~Wp~~k~s~~D~y~AR-------vv~~sl~i~e~ 159 (561)
T COG5354 96 -----EPEIEISPFTSKNNVFVWDIASG----MIVFSFNGISQPYLGWPVLKFSIDDKYVAR-------VVGSSLYIHEI 159 (561)
T ss_pred -----ChhhccCCccccCceeEEeccCc----eeEeeccccCCcccccceeeeeecchhhhh-------hccCeEEEEec
Confidence 111 1111123447999999999 7888877765 4 33 5778887764433 33457889997
Q ss_pred CCceEE----EEeecCCCcEEEEEEcCC----eEEE-----EeCCCcEEEEEccCCCCcc-----eecceEEEEecCCCC
Q 041206 244 DNLECV----QTLKGHSDTVTSLLFWDE----YLFS-----SSLDETIKIWLYTHTKNNA-----ELSSLFGMLDAEAKP 305 (371)
Q Consensus 244 ~~~~~~----~~~~~~~~~v~~~~~~~~----~l~s-----~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~ 305 (371)
+.... +.++ ...|....++|. .|+. ...++.+++|.+....... ....+...+.+.+.
T Consensus 160 -t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~- 235 (561)
T COG5354 160 -TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGK- 235 (561)
T ss_pred -CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCc-
Confidence 32221 1111 234555556532 2332 4567889999877444211 11222222333333
Q ss_pred EEEEe------c-----CCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC---eEEeeCCCCcEEEEEcccc
Q 041206 306 VLFSS------G-----KDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG---LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 306 ~l~~~------~-----~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~---~l~~~~~dg~i~iw~~~~~ 364 (371)
+++.- + ....++++++............++|...+|.|.+ -+++|-.+-.+.++++...
T Consensus 236 ~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 236 YLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred eEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc
Confidence 33221 0 2357889998865555554458899999999988 4455567888888888764
No 294
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.66 E-value=5.7e-05 Score=75.76 Aligned_cols=206 Identities=15% Similarity=0.080 Sum_probs=119.1
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC
Q 041206 98 AVTNVGLPSGSNKLYSGS-RDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND 176 (371)
Q Consensus 98 ~V~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~ 176 (371)
....++++++++.|+.+. ..+.|+.+|..++. +.++...+... ....+ +..+.... -.....++++++
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g-~~~~g-----g~~~~~~~----ln~P~gVa~dp~ 693 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKG-SDYQG-----GKKGTSQV----LNSPWDVCFEPV 693 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCccc-CCCCC-----ChhhhHhh----cCCCeEEEEecC
Confidence 357899999888766655 45679999987654 33332211000 00000 00000000 012346777763
Q ss_pred ---EEEEEeCCCeEEEEeccCCCCcceeeEEEec---------------C-cceEEEEecCCce-e-EecccceeeeeCC
Q 041206 177 ---LLFAGSEGGVISVWKGTFVANPFKQVASIRA---------------P-LWFCSLSSSNDTR-W-NSKEEAAVFEFCG 235 (371)
Q Consensus 177 ---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---------------~-~~v~~~~~~~~~~-l-~~~~~~~~~~~~d 235 (371)
.+++.+.++.|++||..++. . ..+.+ . .....++++|++. + ++- +.+
T Consensus 694 ~g~LyVad~~~~~I~v~d~~~g~----v-~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVAD-------s~n 761 (1057)
T PLN02919 694 NEKVYIAMAGQHQIWEYNISDGV----T-RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIAD-------SES 761 (1057)
T ss_pred CCeEEEEECCCCeEEEEECCCCe----E-EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEE-------CCC
Confidence 45555567788888876641 1 11110 0 1456799999875 4 455 677
Q ss_pred CeEEEEECCCceEEEEee-------------cC--------CCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCc---
Q 041206 236 HTTRTWNLDNLECVQTLK-------------GH--------SDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNN--- 289 (371)
Q Consensus 236 g~i~iwd~~~~~~~~~~~-------------~~--------~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~--- 289 (371)
+.|++||+.++....... .+ -.....++++ ++.+++-+.++.|++||.......
T Consensus 762 ~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia 841 (1057)
T PLN02919 762 SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA 841 (1057)
T ss_pred CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe
Confidence 999999998765321110 00 0123467777 567888888999999997543321
Q ss_pred --------------ceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcce
Q 041206 290 --------------AELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKL 326 (371)
Q Consensus 290 --------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 326 (371)
..+.....+...++++++++-+.++.|++||+.+++.
T Consensus 842 G~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 842 GTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 1112233444455566888888999999999988764
No 295
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.66 E-value=0.00022 Score=62.13 Aligned_cols=162 Identities=12% Similarity=0.117 Sum_probs=106.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeCC-----C---e-----e---EEEe-ecCCEEEEecCCcEEEEEeCCC---
Q 041206 107 GSNKLYSGSRDGRVSVWDRDSGRCVNVITNG-----A---E-----I---GCLI-SEGSWVFLGLPNAVKSWRVNAA--- 166 (371)
Q Consensus 107 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-----~---~-----~---~~~~-~~~~~~~~~~~~~i~~~~~~~~--- 166 (371)
||+.++- +..|.|.++|.++.+..+. ..+ . + . ..++ .++.+++.-+.+..-+.+...+
T Consensus 277 DGkrIvF-q~~GdIylydP~td~lekl-dI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~i 354 (668)
T COG4946 277 DGKRIVF-QNAGDIYLYDPETDSLEKL-DIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSI 354 (668)
T ss_pred CCcEEEE-ecCCcEEEeCCCcCcceee-ecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeE
Confidence 4544433 3457799999877654322 111 0 0 0 0011 2466666666666655555433
Q ss_pred ------CeeEEEE--eCCEEEEEeCCC-eEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCC
Q 041206 167 ------SVNALVV--NNDLLFAGSEGG-VISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCG 235 (371)
Q Consensus 167 ------~v~~~~~--~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~d 235 (371)
.|.-..+ .++-++.|..|| .+-|+|..++ + ...+...- .|.++..+++|+ ++.+ ...
T Consensus 355 qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~----e-~kr~e~~lg~I~av~vs~dGK~~vva-------Ndr 422 (668)
T COG4946 355 QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG----E-VKRIEKDLGNIEAVKVSPDGKKVVVA-------NDR 422 (668)
T ss_pred EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc----e-EEEeeCCccceEEEEEcCCCcEEEEE-------cCc
Confidence 3444444 344889999999 8999999987 3 34444444 999999999998 7777 777
Q ss_pred CeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCC----cEEEEE
Q 041206 236 HTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDE----TIKIWL 282 (371)
Q Consensus 236 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg----~i~iwd 282 (371)
..+.+.|+.+++....=+...+-|+...|+ ++++|-+--+| .|+++|
T Consensus 423 ~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklyd 475 (668)
T COG4946 423 FELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYD 475 (668)
T ss_pred eEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEe
Confidence 899999999988765545566788899998 45777655444 578888
No 296
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=4.5e-07 Score=77.64 Aligned_cols=242 Identities=12% Similarity=0.041 Sum_probs=163.4
Q ss_pred EeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeC-C
Q 041206 39 EMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSR-D 117 (371)
Q Consensus 39 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~-d 117 (371)
-+|.+.|+.+......+.+. ++.++.++.|..++ -..-+.+..++.|-..|.+++.+.++..+.|.+. |
T Consensus 6 ymhrd~i~hv~~tka~fiiq-----ASlDGh~KFWkKs~-----isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~D 75 (558)
T KOG0882|consen 6 YMHRDVITHVFPTKAKFIIQ-----ASLDGHKKFWKKSR-----ISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPD 75 (558)
T ss_pred hcccceeeeEeeehhheEEe-----eecchhhhhcCCCC-----ccceeehhhhHHHHHHHHhhhccccceeEeeccCcc
Confidence 36888888888777666665 67788888998332 1345778888999999999999999999999777 9
Q ss_pred CcEEEEECCCCceEEEEeC---CCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC----EEEEE-eCCCeEEE
Q 041206 118 GRVSVWDRDSGRCVNVITN---GAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND----LLFAG-SEGGVISV 189 (371)
Q Consensus 118 g~v~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~----~l~~~-~~dg~v~i 189 (371)
..++++|+++-..+.-++. +..+.+ ..++. .+++. -.++.+.+
T Consensus 76 hs~KvfDvEn~DminmiKL~~lPg~a~w-----------------------------v~skGd~~s~IAVs~~~sg~i~V 126 (558)
T KOG0882|consen 76 HSVKVFDVENFDMINMIKLVDLPGFAEW-----------------------------VTSKGDKISLIAVSLFKSGKIFV 126 (558)
T ss_pred cceeEEEeeccchhhhcccccCCCceEE-----------------------------ecCCCCeeeeEEeecccCCCcEE
Confidence 9999999987765543332 222111 11222 33333 35688999
Q ss_pred EeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCC------ceEE---------EEe
Q 041206 190 WKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDN------LECV---------QTL 252 (371)
Q Consensus 190 wd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~------~~~~---------~~~ 252 (371)
+|-....+ +....-..|. +|.++.+.+.+. +++. ...|.|.-|.... .+.. ..+
T Consensus 127 vD~~~d~~--q~~~fkklH~sPV~~i~y~qa~Ds~vSi-------D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f 197 (558)
T KOG0882|consen 127 VDGFGDFC--QDGYFKKLHFSPVKKIRYNQAGDSAVSI-------DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF 197 (558)
T ss_pred ECCcCCcC--ccceecccccCceEEEEeeccccceeec-------cccceeEeecCCCcccCccccccccccccchhhcc
Confidence 99776532 3334444566 999999999876 7777 8889999998873 1111 112
Q ss_pred ecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC--------------------------------------ccee
Q 041206 253 KGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN--------------------------------------NAEL 292 (371)
Q Consensus 253 ~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~--------------------------------------~~~~ 292 (371)
........++.|+ +..+.+-+.|.+|++++++.++. ....
T Consensus 198 ~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~ 277 (558)
T KOG0882|consen 198 PKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGST 277 (558)
T ss_pred cccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCc
Confidence 2234566788888 78899999999999999655441 0111
Q ss_pred cceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeee
Q 041206 293 SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARI 330 (371)
Q Consensus 293 ~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 330 (371)
.... ..+...+++|+-++-=| |++.++.+++....+
T Consensus 278 ~~~~-~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 278 VGTN-AVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred ccce-eEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 1122 23444555887777654 888888887665544
No 297
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=6.5e-08 Score=89.29 Aligned_cols=250 Identities=13% Similarity=0.119 Sum_probs=161.5
Q ss_pred cCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-CeeEEEee--cCCEEEEe--cCC-
Q 041206 83 TNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNG-AEIGCLIS--EGSWVFLG--LPN- 156 (371)
Q Consensus 83 ~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~--~~~- 156 (371)
...++..++++.|+...+|++|+-+.+.|+.|+..|.|+++++.+|......+.+ .+++.+.+ ++....++ ...
T Consensus 1088 FSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1088 FSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred HhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCc
Confidence 3456778889999999999999999999999999999999999999988887765 45666655 45555543 233
Q ss_pred cEEEEEeCCC--------CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEec
Q 041206 157 AVKSWRVNAA--------SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSK 225 (371)
Q Consensus 157 ~i~~~~~~~~--------~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~ 225 (371)
...+|++.+. .-.++.|+.. .-+.|+......+||++++....+.+....+.+ .-++..|+|+..|+-
T Consensus 1168 lsaLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred hHHHhccccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence 4677887653 4456677665 556667777889999999832212222222334 557889999887663
Q ss_pred ccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcce---ecceEEEEe
Q 041206 226 EEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAE---LSSLFGMLD 300 (371)
Q Consensus 226 ~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~ 300 (371)
.|| .+||++..+.++.|...+..+. -.|+ ++.++.-+ .|||+++.+.... +......+.
T Consensus 1247 --------ndG--vLWDvR~~~aIh~FD~ft~~~~-G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ldqc~VtFN 1310 (1516)
T KOG1832|consen 1247 --------NDG--VLWDVRIPEAIHRFDQFTDYGG-GGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLDQCAVTFN 1310 (1516)
T ss_pred --------eCc--eeeeeccHHHHhhhhhheeccc-ccccCCCceEEeec-----hhhhhHHHHHHhcCccccceEEEec
Confidence 355 4799998887777654332222 2344 45555443 4899887664222 222222344
Q ss_pred cCCCCEEEEecC-----------------CCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEee
Q 041206 301 AEAKPVLFSSGK-----------------DSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPG 350 (371)
Q Consensus 301 ~~~~~~l~~~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~ 350 (371)
+.+. .+++.-. -...|-||....+.+.++.....+..++-+|.. ++..-
T Consensus 1311 stG~-VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1311 STGD-VMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred cCcc-chhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEE
Confidence 4443 3333210 012445555566666676667778888877766 55443
No 298
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.61 E-value=2.3e-07 Score=52.88 Aligned_cols=37 Identities=38% Similarity=0.737 Sum_probs=34.4
Q ss_pred ceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEE
Q 041206 246 LECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWL 282 (371)
Q Consensus 246 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd 282 (371)
+++++++++|.++|.+++|+ +++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 47889999999999999999 68999999999999997
No 299
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.58 E-value=7.6e-07 Score=75.15 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=63.4
Q ss_pred CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEEC
Q 041206 167 SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNL 243 (371)
Q Consensus 167 ~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~ 243 (371)
-++.++++|+ +++++..|..|++-...... ....-..+|. -|..++.-++..|+++ +.|+++++||+
T Consensus 153 ml~dVavS~D~~~IitaDRDEkIRvs~ypa~f---~IesfclGH~eFVS~isl~~~~~LlS~-------sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 153 MLLDVAVSPDDQFIITADRDEKIRVSRYPATF---VIESFCLGHKEFVSTISLTDNYLLLSG-------SGDKTLRLWDI 222 (390)
T ss_pred hhheeeecCCCCEEEEecCCceEEEEecCccc---chhhhccccHhheeeeeeccCceeeec-------CCCCcEEEEec
Confidence 4889999998 99999999999997766541 2223345688 9999999997779999 99999999999
Q ss_pred CCceEEEEee
Q 041206 244 DNLECVQTLK 253 (371)
Q Consensus 244 ~~~~~~~~~~ 253 (371)
++++.+.++.
T Consensus 223 ~sgk~L~t~d 232 (390)
T KOG3914|consen 223 TSGKLLDTCD 232 (390)
T ss_pred ccCCcccccc
Confidence 9999886654
No 300
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.52 E-value=8.5e-05 Score=64.60 Aligned_cols=125 Identities=14% Similarity=0.164 Sum_probs=93.2
Q ss_pred eCccCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceEEEEeCCCeeEEEe--ecCCEEEEecC-CcEEEEEeCCC--
Q 041206 93 NGHKKAVTNVGLPSGSNKLYSGSRDG-RVSVWDRDSGRCVNVITNGAEIGCLI--SEGSWVFLGLP-NAVKSWRVNAA-- 166 (371)
Q Consensus 93 ~~h~~~V~~~~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~i~~~~~~~~-- 166 (371)
-+|.+.|.-..+.-+++-++.|..|| .+-|+|.++++..+....-+.+.++. +++++++++++ ..+.++|+.++
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence 35788898888888888999999999 89999999998777766666666664 56787877765 57888888887
Q ss_pred ---------CeeEEEEeCC--EEEEEeCCC----eEEEEeccCCCCcceeeEEEecCcceEEEEecCCce
Q 041206 167 ---------SVNALVVNND--LLFAGSEGG----VISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR 221 (371)
Q Consensus 167 ---------~v~~~~~~~~--~l~~~~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 221 (371)
-|+.+.|+|+ +++-+--+| .|+++|+.++ +..........=.+-+|.||++
T Consensus 436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~----Kiy~vTT~ta~DfsPaFD~d~r 501 (668)
T COG4946 436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG----KIYDVTTPTAYDFSPAFDPDGR 501 (668)
T ss_pred eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC----eEEEecCCcccccCcccCCCCc
Confidence 5788899998 777665554 6899999987 4333222222444566777775
No 301
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.52 E-value=9.5e-07 Score=70.41 Aligned_cols=188 Identities=11% Similarity=0.168 Sum_probs=108.4
Q ss_pred eeEEEEeCC-EEEEEeCCCeEEEEeccCC--------CCcceeeEEEecCc--ceEEEEecCCceeEecccceeeeeCCC
Q 041206 168 VNALVVNND-LLFAGSEGGVISVWKGTFV--------ANPFKQVASIRAPL--WFCSLSSSNDTRWNSKEEAAVFEFCGH 236 (371)
Q Consensus 168 v~~~~~~~~-~l~~~~~dg~v~iwd~~~~--------~~~~~~~~~~~~~~--~v~~~~~~~~~~l~~~~~~~~~~~~dg 236 (371)
+..+.+..+ .|+++..++.+..+..... .....++..+..++ .-..-.-.++..++++ +.||
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~-------~~dg 111 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIG-------YADG 111 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEec-------CCCc
Confidence 555555555 6666666655555443322 11112333343333 2222223344568888 9999
Q ss_pred eEEEEECCCceEE-EEeec-CCCcEEEEEE-c-CCeEEEEe-----CCCcEEEEEccCCCC----cceecceEEEEe-cC
Q 041206 237 TTRTWNLDNLECV-QTLKG-HSDTVTSLLF-W-DEYLFSSS-----LDETIKIWLYTHTKN----NAELSSLFGMLD-AE 302 (371)
Q Consensus 237 ~i~iwd~~~~~~~-~~~~~-~~~~v~~~~~-~-~~~l~s~~-----~dg~i~iwd~~~~~~----~~~~~~~~~~~~-~~ 302 (371)
.+.+++.+.-..+ .++.. |.+. .+.++ + ++.+.++. .-+..+.|+++.... ......+..+.. |.
T Consensus 112 ~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~ 190 (319)
T KOG4714|consen 112 SLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPA 190 (319)
T ss_pred eEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcc
Confidence 9999998751111 11111 1111 11111 1 33443332 234566777654432 111122333333 34
Q ss_pred CCCEEEEecCCCeEEEEEcCCcceeeeec--CCceEEEEEeCCCC--eEEeeCCCCcEEEEEccc
Q 041206 303 AKPVLFSSGKDSAIRLYELPSFKLRARIF--SRREVEVDQIGPAG--LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 303 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~--~l~~~~~dg~i~iw~~~~ 363 (371)
.++++++|+.||.+.+||.++......+. |..+++.+-|+|.. .|++++.||.+..||-.+
T Consensus 191 qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 191 QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 45578899999999999999876544444 68899999999977 999999999999999874
No 302
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.51 E-value=0.00056 Score=67.60 Aligned_cols=276 Identities=14% Similarity=0.063 Sum_probs=154.2
Q ss_pred ceeeeeeeecceeecccee--eCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeC---CC
Q 041206 44 GLAAMAIRVCNNWISDSCV--YGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSR---DG 118 (371)
Q Consensus 44 ~v~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~---dg 118 (371)
+-..+.|..++.|++.+.. ..+..+.+++|+ .++++..+-..-.+-=.+++|.|.|+++|+... ..
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~---------ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~ 281 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS---------REGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRH 281 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEEC---------CCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCc
Confidence 3344556655555554444 223468899998 345544444433334457899999999999864 34
Q ss_pred cEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCC
Q 041206 119 RVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVWKGTFVA 196 (371)
Q Consensus 119 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~ 196 (371)
.|.+|. ++|..-..|.... +.....|..+.|+++ .|++...|. |.+|-..+..
T Consensus 282 ~VvFfE-rNGLrhgeF~l~~-----------------------~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 282 DVVFFE-RNGLRHGEFTLRF-----------------------DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred EEEEEe-cCCcEeeeEecCC-----------------------CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 566676 4555544444321 112335788999888 666655444 9999877753
Q ss_pred CcceeeEEEecC--cceEEEEecCCc--eeEecccceeeeeCCCeEEE-----------------------EECCCce--
Q 041206 197 NPFKQVASIRAP--LWFCSLSSSNDT--RWNSKEEAAVFEFCGHTTRT-----------------------WNLDNLE-- 247 (371)
Q Consensus 197 ~~~~~~~~~~~~--~~v~~~~~~~~~--~l~~~~~~~~~~~~dg~i~i-----------------------wd~~~~~-- 247 (371)
- -..+.+... ..+..+.|+|.. +|... +.+|.+.. -|-.+-.
T Consensus 337 W--YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~-------t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllT 407 (928)
T PF04762_consen 337 W--YLKQEIRFSSSESVNFVKWDPEKPLRLHVL-------TSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLT 407 (928)
T ss_pred E--EEEEEEEccCCCCCCceEECCCCCCEEEEE-------ecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEe
Confidence 2 223333322 255568888854 34444 33344333 2222100
Q ss_pred -----------EEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCc----------------------cee
Q 041206 248 -----------CVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNN----------------------AEL 292 (371)
Q Consensus 248 -----------~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~----------------------~~~ 292 (371)
....+. -..+|.+++|+ +..+++-..||.|.+|........ ...
T Consensus 408 pf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (928)
T PF04762_consen 408 PFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPL 486 (928)
T ss_pred cccccCCCchHhceEEc-CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccccccccccccccc
Confidence 001222 34689999998 445999999999999995433211 011
Q ss_pred cceEEEEecCCCCEEEEecC---CCeEEEEEcCCcc---eeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccc
Q 041206 293 SSLFGMLDAEAKPVLFSSGK---DSAIRLYELPSFK---LRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 293 ~~~~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~---~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~ 363 (371)
..+....+.....+++.... ...+.+++....+ ...... ..+.+..+...++. .++.-..||.+...+...
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~ 565 (928)
T PF04762_consen 487 GSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDG 565 (928)
T ss_pred ccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCC
Confidence 12333444444434444443 3578888774332 222222 35566666666665 466667788888655543
No 303
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.51 E-value=4.3e-05 Score=62.25 Aligned_cols=199 Identities=14% Similarity=0.107 Sum_probs=106.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeC---
Q 041206 99 VTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNN--- 175 (371)
Q Consensus 99 V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~--- 175 (371)
=+.++||||+..||.+...|+|+++|+.. ..+..++.... +.+. -+..|..+.|-+
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~-----~~~d---------------~~~Aiagl~Fl~~~~ 104 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMS-----FPGD---------------LSDAIAGLIFLEYKK 104 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccc-----cCCc---------------cccceeeeEeecccc
Confidence 46789999999999999999999999874 44444443210 0000 011344444422
Q ss_pred --C---EEEEEeCCCeEEEEeccCCC-CcceeeEE--EecC-c-ceEEEEecCCce-eEecccceeeeeCCC--------
Q 041206 176 --D---LLFAGSEGGVISVWKGTFVA-NPFKQVAS--IRAP-L-WFCSLSSSNDTR-WNSKEEAAVFEFCGH-------- 236 (371)
Q Consensus 176 --~---~l~~~~~dg~v~iwd~~~~~-~~~~~~~~--~~~~-~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg-------- 236 (371)
+ .|++-...|.++-|-+..+. ..++.... +..| . .|.++.++|..+ |+.|+ ....
T Consensus 105 s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG------~~~~~~~~s~a~ 178 (282)
T PF15492_consen 105 SAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGG------CEQNQDGMSKAS 178 (282)
T ss_pred ccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEec------cCCCCCcccccc
Confidence 1 67777788888888764321 12233333 3334 3 899999999876 44441 2222
Q ss_pred --eEEEEECCCceEEEEeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCC-CCcceecceEEEEecCCCCEEEEecCC
Q 041206 237 --TTRTWNLDNLECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHT-KNNAELSSLFGMLDAEAKPVLFSSGKD 313 (371)
Q Consensus 237 --~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~d 313 (371)
-+..|.+-++.+-...-. .+.++.-......+..++-.++.. ........+..+..++++..|++...+
T Consensus 179 ~~GLtaWRiL~~~Pyyk~v~--------~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~s 250 (282)
T PF15492_consen 179 SCGLTAWRILSDSPYYKQVT--------SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFS 250 (282)
T ss_pred ccCceEEEEcCCCCcEEEcc--------ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcC
Confidence 233444433332211100 000111111111121222111110 111122234445556666699999999
Q ss_pred CeEEEEEcCCcceeeeecC
Q 041206 314 SAIRLYELPSFKLRARIFS 332 (371)
Q Consensus 314 ~~i~iwd~~~~~~~~~~~~ 332 (371)
|.|.+|++.+-++......
T Consensus 251 G~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 251 GSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CeEEEEecCcchhhcccch
Confidence 9999999999887776653
No 304
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.49 E-value=0.00049 Score=57.63 Aligned_cols=213 Identities=14% Similarity=0.101 Sum_probs=128.0
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEe-CC-E
Q 041206 101 NVGLPS-GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVN-ND-L 177 (371)
Q Consensus 101 ~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~-~~-~ 177 (371)
+..|.+ ++.++++--..+.|..|+..+++... +.... ...+.+. ++ .
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-----------------------------~~G~~~~~~~g~ 53 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-----------------------------PNGMAFDRPDGR 53 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-----------------------------EEEEEEECTTSE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-----------------------------CceEEEEccCCE
Confidence 567887 67777777678899999988775533 22222 4556666 44 6
Q ss_pred EEEEeCCCeEEEEeccCCCCcceeeEEEe-c--Cc-ceEEEEecCCceeEecccceeeeeCC--CeEEEEECCCceEEEE
Q 041206 178 LFAGSEGGVISVWKGTFVANPFKQVASIR-A--PL-WFCSLSSSNDTRWNSKEEAAVFEFCG--HTTRTWNLDNLECVQT 251 (371)
Q Consensus 178 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~--~~-~v~~~~~~~~~~l~~~~~~~~~~~~d--g~i~iwd~~~~~~~~~ 251 (371)
++++...+ +.++|+.++. .+.+.... . .. ..+.+++.++|.++.+....-..... |.|..++.. ++....
T Consensus 54 l~v~~~~~-~~~~d~~~g~--~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 54 LYVADSGG-IAVVDPDTGK--VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp EEEEETTC-EEEEETTTTE--EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred EEEEEcCc-eEEEecCCCc--EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 66666544 4555877762 12333332 1 22 88999999999865541110000011 678888888 554433
Q ss_pred eecCCCcEEEEEEc--CCeE-EEEeCCCcEEEEEccCCCC----ccee-------cceEEEEecCCCCEEEEecCCCeEE
Q 041206 252 LKGHSDTVTSLLFW--DEYL-FSSSLDETIKIWLYTHTKN----NAEL-------SSLFGMLDAEAKPVLFSSGKDSAIR 317 (371)
Q Consensus 252 ~~~~~~~v~~~~~~--~~~l-~s~~~dg~i~iwd~~~~~~----~~~~-------~~~~~~~~~~~~~~l~~~~~d~~i~ 317 (371)
.. .-...+.++|+ ++.| ++-+..+.|..+++..... ...+ .....+.....+++.++....+.|.
T Consensus 130 ~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~ 208 (246)
T PF08450_consen 130 AD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIV 208 (246)
T ss_dssp EE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEE
T ss_pred ec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEE
Confidence 33 34567899998 4545 4667788898888764332 0000 1133344455565766666788999
Q ss_pred EEEcCCcceeeeecC-CceEEEEEe-CCCC--eEEe
Q 041206 318 LYELPSFKLRARIFS-RREVEVDQI-GPAG--LFFP 349 (371)
Q Consensus 318 iwd~~~~~~~~~~~~-~~~v~~~~~-s~~~--~l~~ 349 (371)
++|.+ ++.+..+.. ...+++++| .|+. +++|
T Consensus 209 ~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 209 VFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred EECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 99988 777776663 368999999 4665 4444
No 305
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.45 E-value=0.0019 Score=63.93 Aligned_cols=290 Identities=12% Similarity=0.063 Sum_probs=154.3
Q ss_pred cCCCCceeeccCcccccc--eeEEEE----------EeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCc
Q 041206 15 HSEGGETMMSDDDDLMKG--RAEERE----------EMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNT 82 (371)
Q Consensus 15 ~sp~g~~l~~~~~d~~~~--~~~~~~----------~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (371)
.-.||+++|+...+...+ |.++.+ +.-.+--.++++.|.+.++++..... ....|-.+. .+ -
T Consensus 217 WRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~-~~~~VvFfE--rN---G 290 (928)
T PF04762_consen 217 WRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLP-DRHDVVFFE--RN---G 290 (928)
T ss_pred ECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcC-CCcEEEEEe--cC---C
Confidence 568999999887754443 333332 21122223667899998887666522 334455555 11 0
Q ss_pred cCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eEEEEe--CCCeeEEEeec---CCEEEE-ec
Q 041206 83 TNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGR--CVNVIT--NGAEIGCLISE---GSWVFL-GL 154 (371)
Q Consensus 83 ~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~--~~~~~~~~~~~---~~~~~~-~~ 154 (371)
...++....+......|..++|++|+..||.--.|. |.+|-..+.. ..+.+. ....+..+.++ ...+.. ..
T Consensus 291 LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~ 369 (928)
T PF04762_consen 291 LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTS 369 (928)
T ss_pred cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEec
Confidence 111222222334567899999999999999987666 9999987663 223333 23333334442 233333 34
Q ss_pred CCcEEEEEeCCCCeeEEEEeC----C--EEEEEeCCCeEEEEeccCCCCc-ceeeEEEecCcceEEEEecCCce-eEecc
Q 041206 155 PNAVKSWRVNAASVNALVVNN----D--LLFAGSEGGVISVWKGTFVANP-FKQVASIRAPLWFCSLSSSNDTR-WNSKE 226 (371)
Q Consensus 155 ~~~i~~~~~~~~~v~~~~~~~----~--~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~-l~~~~ 226 (371)
++.+..+++. ..++.++ + -.+..-....+.+-.++...-+ +.....+....+|.+++|++++. +++-
T Consensus 370 ~g~~~~~~~~----~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl- 444 (928)
T PF04762_consen 370 NGQYEIYDFA----WDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVL- 444 (928)
T ss_pred CCcEEEEEEE----EEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEE-
Confidence 4666555542 2222221 1 2222223345666666654322 12234444444999999999874 7777
Q ss_pred cceeeeeCCCeEEEEECCCceE--------EEEee----------cCCCcEEEEEEc-CC-eEEEEeC---CCcEEEEEc
Q 041206 227 EAAVFEFCGHTTRTWNLDNLEC--------VQTLK----------GHSDTVTSLLFW-DE-YLFSSSL---DETIKIWLY 283 (371)
Q Consensus 227 ~~~~~~~~dg~i~iwd~~~~~~--------~~~~~----------~~~~~v~~~~~~-~~-~l~s~~~---dg~i~iwd~ 283 (371)
..||.+.+|....... ...+. .....+..++|. ++ .++.... ...+.++++
T Consensus 445 ------~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 518 (928)
T PF04762_consen 445 ------TSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDI 518 (928)
T ss_pred ------ECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEe
Confidence 8899999988543211 11111 123456777777 34 3333333 357888887
Q ss_pred cCCCCccee-------cceEEEEecCCCCEEEEecCCCeEEEEEcC
Q 041206 284 THTKNNAEL-------SSLFGMLDAEAKPVLFSSGKDSAIRLYELP 322 (371)
Q Consensus 284 ~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 322 (371)
......... ..+......+....++.-..+|.+...+..
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~ 564 (928)
T PF04762_consen 519 DDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSD 564 (928)
T ss_pred ccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecC
Confidence 433321111 111222233333235555567777655443
No 306
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.45 E-value=0.00072 Score=57.59 Aligned_cols=255 Identities=14% Similarity=0.141 Sum_probs=129.6
Q ss_pred cCCceeeEeeeCccCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceEEEEeCCC--eeEEEeecCCEE
Q 041206 83 TNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGS----------RDGRVSVWDRDSGRCVNVITNGA--EIGCLISEGSWV 150 (371)
Q Consensus 83 ~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~ 150 (371)
.+.++.+-.+.+ +-.-.+..+|+++.+++++ ..-.|.+||..+-+....+..+. ...+....+.+-
T Consensus 24 ~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ 101 (342)
T PF06433_consen 24 ADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFA 101 (342)
T ss_dssp TTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEE
T ss_pred CCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceE
Confidence 455666666653 2334467899999988753 33469999999998888766543 222211222222
Q ss_pred EEecCCcEEEEEeCCCCeeEEEEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCceeEeccccee
Q 041206 151 FLGLPNAVKSWRVNAASVNALVVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAV 230 (371)
Q Consensus 151 ~~~~~~~i~~~~~~~~~v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~ 230 (371)
++..++.+.++++ +-...|.|.|+... +.+..+.... +..+-.+++..+.+-
T Consensus 102 ls~dgk~~~V~N~------------------TPa~SVtVVDl~~~----kvv~ei~~PG-C~~iyP~~~~~F~~l----- 153 (342)
T PF06433_consen 102 LSADGKFLYVQNF------------------TPATSVTVVDLAAK----KVVGEIDTPG-CWLIYPSGNRGFSML----- 153 (342)
T ss_dssp E-TTSSEEEEEEE------------------SSSEEEEEEETTTT----EEEEEEEGTS-EEEEEEEETTEEEEE-----
T ss_pred EccCCcEEEEEcc------------------CCCCeEEEEECCCC----ceeeeecCCC-EEEEEecCCCceEEE-----
Confidence 2222222222222 22345566666665 5555444433 111111122234444
Q ss_pred eeeCCCeEEEEECC-CceEEEE----eecCCCcEE-EEEEc--CCeEEEEeCCCcEEEEEccCCCCc-------------
Q 041206 231 FEFCGHTTRTWNLD-NLECVQT----LKGHSDTVT-SLLFW--DEYLFSSSLDETIKIWLYTHTKNN------------- 289 (371)
Q Consensus 231 ~~~~dg~i~iwd~~-~~~~~~~----~~~~~~~v~-~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~------------- 289 (371)
+.||.+....+. .|+..++ |..-..++. .-++. +..++--+.+|.|+--|+......
T Consensus 154 --C~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~ 231 (342)
T PF06433_consen 154 --CGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEK 231 (342)
T ss_dssp --ETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHH
T ss_pred --ecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCcccc
Confidence 567776666665 3433211 111112221 11222 234444566666666664443310
Q ss_pred ---ceecceEEE-EecCCCCEEEEe--cC-----C--CeEEEEEcCCcceeeeecCCceEEEEEeCCCC--eEEe-eCCC
Q 041206 290 ---AELSSLFGM-LDAEAKPVLFSS--GK-----D--SAIRLYELPSFKLRARIFSRREVEVDQIGPAG--LFFP-GDAS 353 (371)
Q Consensus 290 ---~~~~~~~~~-~~~~~~~~l~~~--~~-----d--~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~--~l~~-~~~d 353 (371)
-.......+ .....+++.+.- +. | ..|.++|+.+.+.+.++....++.+|+++.+. +|++ ...+
T Consensus 232 ~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~ 311 (342)
T PF06433_consen 232 ADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGD 311 (342)
T ss_dssp HTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTT
T ss_pred ccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCC
Confidence 000011111 222333222221 11 1 15888899999999999877889999999988 6654 4568
Q ss_pred CcEEEEEccccceecc
Q 041206 354 GSVGVWKWLLAEQQKM 369 (371)
Q Consensus 354 g~i~iw~~~~~~~~~~ 369 (371)
+.|.+||..+++..+.
T Consensus 312 ~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 312 GTLDVYDAATGKLVRS 327 (342)
T ss_dssp TEEEEEETTT--EEEE
T ss_pred CeEEEEeCcCCcEEee
Confidence 9999999999877653
No 307
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=2.8e-06 Score=72.91 Aligned_cols=194 Identities=13% Similarity=0.123 Sum_probs=131.6
Q ss_pred CeeEEEEeCC-EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeC-CCeEEEEE
Q 041206 167 SVNALVVNND-LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFC-GHTTRTWN 242 (371)
Q Consensus 167 ~v~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~-dg~i~iwd 242 (371)
.|+.+...-. ++.+++.||.++.|.-.... ..+.+..+..|. .+.+++.+.++. +.+. +. |..++++|
T Consensus 11 ~i~hv~~tka~fiiqASlDGh~KFWkKs~is-GvEfVKhFraHL~~I~sl~~S~dg~L~~Sv-------~d~Dhs~KvfD 82 (558)
T KOG0882|consen 11 VITHVFPTKAKFIIQASLDGHKKFWKKSRIS-GVEFVKHFRAHLGVILSLAVSYDGWLFRSV-------EDPDHSVKVFD 82 (558)
T ss_pred eeeeEeeehhheEEeeecchhhhhcCCCCcc-ceeehhhhHHHHHHHHhhhccccceeEeec-------cCcccceeEEE
Confidence 3555544443 99999999999999765421 115566777788 899999999997 6675 55 99999999
Q ss_pred CCCceEEEEee--cCCCcEEEEEEcCC---eE-EEEeCCCcEEEEEccCCCC------cceecceEEEEecCCCCEEEEe
Q 041206 243 LDNLECVQTLK--GHSDTVTSLLFWDE---YL-FSSSLDETIKIWLYTHTKN------NAELSSLFGMLDAEAKPVLFSS 310 (371)
Q Consensus 243 ~~~~~~~~~~~--~~~~~v~~~~~~~~---~l-~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~l~~~ 310 (371)
+.+-..+.-++ .-.+.+..+.-.+. .+ ++.-.++.+.++|-..... ..+.+.+......+.+..+++.
T Consensus 83 vEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi 162 (558)
T KOG0882|consen 83 VENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI 162 (558)
T ss_pred eeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence 98755442222 22222222211131 33 3344678999999544331 2334455555666666678888
Q ss_pred cCCCeEEEEEcCC------cceeeeecC----------CceEEEEEeCCCC-eEEeeCCCCcEEEEEccccceec
Q 041206 311 GKDSAIRLYELPS------FKLRARIFS----------RREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 311 ~~d~~i~iwd~~~------~~~~~~~~~----------~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
...|.|.-|.... .+....+++ .....++.|+|++ .+.+-+.|..|+++...++++.+
T Consensus 163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence 8899999998873 222222222 5677899999999 99999999999999999987654
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=2.2e-05 Score=72.35 Aligned_cols=177 Identities=8% Similarity=0.032 Sum_probs=119.6
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeC
Q 041206 96 KKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNN 175 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~ 175 (371)
.+.++|++++ ++.|+-|..+|.|++.+.... ....+.+ .+.....
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~~~~~~~--------------------------------s~~~~~G 83 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-PKTNFDH--------------------------------SSSILEG 83 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-ccccccc--------------------------------cccccCC
Confidence 4567888887 679999999999999997533 2211111 1112233
Q ss_pred CEEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCC------ceeEecccceeeeeCCCeEEEEECCC--ce
Q 041206 176 DLLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSND------TRWNSKEEAAVFEFCGHTTRTWNLDN--LE 247 (371)
Q Consensus 176 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~l~~~~~~~~~~~~dg~i~iwd~~~--~~ 247 (371)
.++++|+.||.|.|-.+-+. +...++.-+.++.+++++|+ .++++| +.-| +.++.-+= .+
T Consensus 84 ey~asCS~DGkv~I~sl~~~----~~~~~~df~rpiksial~Pd~~~~~sk~fv~G-------G~ag-lvL~er~wlgnk 151 (846)
T KOG2066|consen 84 EYVASCSDDGKVVIGSLFTD----DEITQYDFKRPIKSIALHPDFSRQQSKQFVSG-------GMAG-LVLSERNWLGNK 151 (846)
T ss_pred ceEEEecCCCcEEEeeccCC----ccceeEecCCcceeEEeccchhhhhhhheeec-------Ccce-EEEehhhhhcCc
Confidence 49999999999999999887 55666666669999999997 238888 8888 66665321 11
Q ss_pred EEEEeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCCccee----------cceEEEEecCCCCEEEEecCCCeEE
Q 041206 248 CVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKNNAEL----------SSLFGMLDAEAKPVLFSSGKDSAIR 317 (371)
Q Consensus 248 ~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~d~~i~ 317 (371)
.--.+....++|.++.|.++++|=++.+| |++||....+....+ .-...+.|.+.. .|+.| ...+|+
T Consensus 152 ~~v~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIG-W~d~v~ 228 (846)
T KOG2066|consen 152 DSVVLSEGEGPIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIG-WGDSVK 228 (846)
T ss_pred cceeeecCccceEEEEecCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEe-cCCeEE
Confidence 11245667789999999999999998888 899997655421111 011223444444 45444 444788
Q ss_pred EEEcC
Q 041206 318 LYELP 322 (371)
Q Consensus 318 iwd~~ 322 (371)
|..++
T Consensus 229 i~~I~ 233 (846)
T KOG2066|consen 229 ICSIK 233 (846)
T ss_pred EEEEe
Confidence 88887
No 309
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.37 E-value=0.0011 Score=61.43 Aligned_cols=226 Identities=11% Similarity=0.036 Sum_probs=128.4
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCCEEEEEe------
Q 041206 109 NKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNNDLLFAGS------ 182 (371)
Q Consensus 109 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~l~~~~------ 182 (371)
..++.++.+|.|.-+|.++|+.+..+........ . +.+. .+..+....+++++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~-----~------------~~i~----ssP~v~~~~v~vg~~~~~~~ 169 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPP-----G------------YTMT----GAPTIVKKLVIIGSSGAEFF 169 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCc-----c------------eEec----CCCEEECCEEEEeccccccc
Confidence 6788888999999999999999988775433100 0 0000 01111223333332
Q ss_pred ---CCCeEEEEeccCCCCcceeeEEEecCc---------------------ce-EEEEecC-CceeEecccceeeeeCCC
Q 041206 183 ---EGGVISVWKGTFVANPFKQVASIRAPL---------------------WF-CSLSSSN-DTRWNSKEEAAVFEFCGH 236 (371)
Q Consensus 183 ---~dg~v~iwd~~~~~~~~~~~~~~~~~~---------------------~v-~~~~~~~-~~~l~~~~~~~~~~~~dg 236 (371)
.+|.+..+|..+++ .+-.++... .+ .+.++.+ .+.++.+ +.++
T Consensus 170 ~~~~~g~v~alD~~TG~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg-------~~~g 238 (488)
T cd00216 170 ACGVRGALRAYDVETGK----LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVG-------TGNG 238 (488)
T ss_pred cCCCCcEEEEEECCCCc----eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEE-------CCCC
Confidence 35677777877773 332222110 01 1233333 2345555 5444
Q ss_pred ------------------eEEEEECCCceEEEEeecCCC----------cE-EEEE-EcC---CeEEEEeCCCcEEEEEc
Q 041206 237 ------------------TTRTWNLDNLECVQTLKGHSD----------TV-TSLL-FWD---EYLFSSSLDETIKIWLY 283 (371)
Q Consensus 237 ------------------~i~iwd~~~~~~~~~~~~~~~----------~v-~~~~-~~~---~~l~s~~~dg~i~iwd~ 283 (371)
.+.-+|.++++.+-.++.-.. ++ ..+. ..+ ..++.++.+|.+...|.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~ 318 (488)
T cd00216 239 SPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDR 318 (488)
T ss_pred CCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEEC
Confidence 799999999999876642111 11 1111 222 25778888999999998
Q ss_pred cCCCCcceecc-eEEEEecCCCCEEEEe------------------cCCCeEEEEEcCCcceeeeecCC---------ce
Q 041206 284 THTKNNAELSS-LFGMLDAEAKPVLFSS------------------GKDSAIRLYELPSFKLRARIFSR---------RE 335 (371)
Q Consensus 284 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~------------------~~d~~i~iwd~~~~~~~~~~~~~---------~~ 335 (371)
++.+..-.... .......+ + .++.+ ..+|.+.-.|+.+++.+.+.... .+
T Consensus 319 ~tG~~~W~~~~~~~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~ 396 (488)
T cd00216 319 TTGKLISARPEVEQPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFP 396 (488)
T ss_pred CCCcEeeEeEeeccccccCC-c-eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCc
Confidence 88775322110 01111122 2 33332 24678999999999988776533 11
Q ss_pred E--EEEEeCCCCeEEeeCCCCcEEEEEccccceecc
Q 041206 336 V--EVDQIGPAGLFFPGDASGSVGVWKWLLAEQQKM 369 (371)
Q Consensus 336 v--~~~~~s~~~~l~~~~~dg~i~iw~~~~~~~~~~ 369 (371)
. ..+... ++.|+.++.||.|+.+|..+++.+..
T Consensus 397 ~~~~~~~~~-g~~v~~g~~dG~l~ald~~tG~~lW~ 431 (488)
T cd00216 397 HWGGSLATA-GNLVFAGAADGYFRAFDATTGKELWK 431 (488)
T ss_pred ccCcceEec-CCeEEEECCCCeEEEEECCCCceeeE
Confidence 1 112222 23888888999999999999887653
No 310
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.34 E-value=0.0012 Score=55.69 Aligned_cols=261 Identities=15% Similarity=0.178 Sum_probs=148.3
Q ss_pred cceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCC--CceEEEEeCCCeeE
Q 041206 67 CRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSR---DGRVSVWDRDS--GRCVNVITNGAEIG 141 (371)
Q Consensus 67 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~---dg~v~iwd~~~--~~~~~~~~~~~~~~ 141 (371)
.+-|..|++... ........+-.+.+.++=|+|+|++++|+++-. +|.|.-|.++. |+....-....
T Consensus 15 s~gI~v~~ld~~-----~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~--- 86 (346)
T COG2706 15 SQGIYVFNLDTK-----TGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL--- 86 (346)
T ss_pred CCceEEEEEeCc-----ccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc---
Confidence 455777774311 111112233456778899999999999999865 46777777764 43322111100
Q ss_pred EEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeC-CCeEEEEeccCCCCcceeeEEEecC---------c
Q 041206 142 CLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSE-GGVISVWKGTFVANPFKQVASIRAP---------L 209 (371)
Q Consensus 142 ~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~---------~ 209 (371)
...+-..++++++ +++++.. .|.|.++-++........+..+... .
T Consensus 87 ----------------------~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~ 144 (346)
T COG2706 87 ----------------------PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQES 144 (346)
T ss_pred ----------------------CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccC
Confidence 0112355666666 5666554 4778888876542221222222111 1
Q ss_pred -ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEee---cCCCcEEEEEEc--CCeEEEE-eCCCcEEEE
Q 041206 210 -WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLK---GHSDTVTSLLFW--DEYLFSS-SLDETIKIW 281 (371)
Q Consensus 210 -~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~--~~~l~s~-~~dg~i~iw 281 (371)
.+....+.|+++ +++. . -.--.|.+|++..+++...-. .....-+-|.|+ +++.... =-+++|.+|
T Consensus 145 ~h~H~a~~tP~~~~l~v~-D-----LG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~ 218 (346)
T COG2706 145 PHVHSANFTPDGRYLVVP-D-----LGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVL 218 (346)
T ss_pred CccceeeeCCCCCEEEEe-e-----cCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEE
Confidence 377888999997 3333 0 223478999999776532211 223455778898 3444443 358899999
Q ss_pred EccCCC-Ccce-------------ecceEEEEecCCCCEEEEec-CCCeEEEEEcCCc--cee--eeec-CCceEEEEEe
Q 041206 282 LYTHTK-NNAE-------------LSSLFGMLDAEAKPVLFSSG-KDSAIRLYELPSF--KLR--ARIF-SRREVEVDQI 341 (371)
Q Consensus 282 d~~~~~-~~~~-------------~~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~--~~~--~~~~-~~~~v~~~~~ 341 (371)
.+.... .... ......+...+++++|.++. ....|.+|.+... ++. .... +....+...+
T Consensus 219 ~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i 298 (346)
T COG2706 219 EYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNI 298 (346)
T ss_pred EEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCcccee
Confidence 976641 1000 12333445556666777653 2346888877653 221 1111 2334789999
Q ss_pred CCCC-eEEeeC-CCCcEEEEEccc
Q 041206 342 GPAG-LFFPGD-ASGSVGVWKWLL 363 (371)
Q Consensus 342 s~~~-~l~~~~-~dg~i~iw~~~~ 363 (371)
+|.+ +|+++. .+..|.+|....
T Consensus 299 ~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 299 NPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CCCCCEEEEEccCCCcEEEEEEcC
Confidence 9999 555555 455799998764
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.31 E-value=0.0015 Score=55.04 Aligned_cols=228 Identities=10% Similarity=0.073 Sum_probs=135.6
Q ss_pred eEEEEEcC-CCCEEEEEeCCCc-EEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC
Q 041206 99 VTNVGLPS-GSNKLYSGSRDGR-VSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND 176 (371)
Q Consensus 99 V~~~~~~~-~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~ 176 (371)
...++.+| .+..++.+-.-|+ ..+||..+++....+..+..-. + --.-.|+++
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRH--------F-----------------yGHg~fs~d 61 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRH--------F-----------------YGHGVFSPD 61 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCE--------E-----------------ecCEEEcCC
Confidence 45677888 5666777777665 7789999999888776532210 0 001233443
Q ss_pred --EEEEE-----eCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEeccccee-----------eeeCCC
Q 041206 177 --LLFAG-----SEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAV-----------FEFCGH 236 (371)
Q Consensus 177 --~l~~~-----~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~-----------~~~~dg 236 (371)
+|++. +..|.|-|||.... ++.+..+..+. .--.+.+.||++ |+.++.-+- ..+.+.
T Consensus 62 G~~LytTEnd~~~g~G~IgVyd~~~~---~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~p 138 (305)
T PF07433_consen 62 GRLLYTTENDYETGRGVIGVYDAARG---YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQP 138 (305)
T ss_pred CCEEEEeccccCCCcEEEEEEECcCC---cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCC
Confidence 33332 34588999999833 27888888888 778888999994 666522221 224445
Q ss_pred eEEEEECCCceEEEE--e--ecCCCcEEEEEEcC-CeEE-----------------EEeCCCcEEEEEccCCCCcceecc
Q 041206 237 TTRTWNLDNLECVQT--L--KGHSDTVTSLLFWD-EYLF-----------------SSSLDETIKIWLYTHTKNNAELSS 294 (371)
Q Consensus 237 ~i~iwd~~~~~~~~~--~--~~~~~~v~~~~~~~-~~l~-----------------s~~~dg~i~iwd~~~~~~~~~~~~ 294 (371)
++...|..+|+.+.+ + ..|...|.-+++.+ ..++ .-..++.++..+.........-..
T Consensus 139 sL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y 218 (305)
T PF07433_consen 139 SLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGY 218 (305)
T ss_pred ceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCc
Confidence 677778888888766 4 23667788888772 2222 222222233333222111111122
Q ss_pred eEEEEecCCCCEE-EEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCCeEEeeCCCCcE
Q 041206 295 LFGMLDAEAKPVL-FSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAGLFFPGDASGSV 356 (371)
Q Consensus 295 ~~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~l~~~~~dg~i 356 (371)
+-++....++.++ +++-..+.+.+||..+++.+.... -..+..++-.+++++++.+. |.+
T Consensus 219 ~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~-l~D~cGva~~~~~f~~ssG~-G~~ 279 (305)
T PF07433_consen 219 IGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP-LPDACGVAPTDDGFLVSSGQ-GQL 279 (305)
T ss_pred eEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc-cCceeeeeecCCceEEeCCC-ccE
Confidence 3333444444344 566678899999999999887654 34466777777775555543 443
No 312
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.30 E-value=0.00037 Score=61.98 Aligned_cols=252 Identities=16% Similarity=0.142 Sum_probs=132.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE-EE-eCCCeeE--EEe---ecCCEEEEec---------CCcEEEE
Q 041206 98 AVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVN-VI-TNGAEIG--CLI---SEGSWVFLGL---------PNAVKSW 161 (371)
Q Consensus 98 ~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~-~~~~~~~--~~~---~~~~~~~~~~---------~~~i~~~ 161 (371)
.|+.+.|.++..-|+.|...|.|.||.+...+.-. .. ....... .+. .++.++-... =....++
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58999999999999999999999999987654332 10 0000000 000 0122222211 0246778
Q ss_pred EeCCCCeeEEEEeCC-EEEEEeCCCeEEEEeccCCCCcceeeEEE--ec------Cc-ceEEEEecC-----Cce----e
Q 041206 162 RVNAASVNALVVNND-LLFAGSEGGVISVWKGTFVANPFKQVASI--RA------PL-WFCSLSSSN-----DTR----W 222 (371)
Q Consensus 162 ~~~~~~v~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~------~~-~v~~~~~~~-----~~~----l 222 (371)
+...++|++++.+.- ++++|..+|.+.|.|++.+ ..+..- .. .. .++++.|.- |+. +
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGP----avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGP----AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTT----EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCC----eEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 888999999999755 9999999999999999877 444331 11 12 677787762 442 6
Q ss_pred EecccceeeeeCCCeEEEEECC--C-ceE----EEEeecCCCcEEEEEEc----C-------------------CeEEEE
Q 041206 223 NSKEEAAVFEFCGHTTRTWNLD--N-LEC----VQTLKGHSDTVTSLLFW----D-------------------EYLFSS 272 (371)
Q Consensus 223 ~~~~~~~~~~~~dg~i~iwd~~--~-~~~----~~~~~~~~~~v~~~~~~----~-------------------~~l~s~ 272 (371)
++| +..|.+.+|.+. . +.. ......+.++|..+..- + +-++..
T Consensus 159 ~vG-------Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv 231 (395)
T PF08596_consen 159 LVG-------TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV 231 (395)
T ss_dssp EEE-------ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE
T ss_pred EEE-------eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE
Confidence 777 999999999774 1 211 11222455666665531 0 124444
Q ss_pred eCCCcEEEEEccCCCCc-----c-ee-cceEEEEe--cCCCCEEEEecCCCeEEEEEcCCcceeeeecC-----CceEEE
Q 041206 273 SLDETIKIWLYTHTKNN-----A-EL-SSLFGMLD--AEAKPVLFSSGKDSAIRLYELPSFKLRARIFS-----RREVEV 338 (371)
Q Consensus 273 ~~dg~i~iwd~~~~~~~-----~-~~-~~~~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~v~~ 338 (371)
..+..+|++.....+.. . .. .....+.. ...+..|++-..+|.|++|.+..-+.+..... ...+..
T Consensus 232 vSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ 311 (395)
T PF08596_consen 232 VSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSS 311 (395)
T ss_dssp E-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT
T ss_pred EcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccc
Confidence 55677999987654421 1 11 11111111 22344688888999999999999888877653 123455
Q ss_pred EEeCCCC-eEEeeCCCCcEEEEEc
Q 041206 339 DQIGPAG-LFFPGDASGSVGVWKW 361 (371)
Q Consensus 339 ~~~s~~~-~l~~~~~dg~i~iw~~ 361 (371)
..++++| .++-.+ ...+.++.+
T Consensus 312 ssis~~Gdi~~~~g-psE~~l~sv 334 (395)
T PF08596_consen 312 SSISRNGDIFYWTG-PSEIQLFSV 334 (395)
T ss_dssp -EE-TTS-EEEE-S-SSEEEEEEE
T ss_pred cEECCCCCEEEEeC-cccEEEEEE
Confidence 6778888 443333 234444444
No 313
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=1.9e-05 Score=73.25 Aligned_cols=105 Identities=20% Similarity=0.190 Sum_probs=80.6
Q ss_pred EEEEEcCCCCEEEEEe----CCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeC
Q 041206 100 TNVGLPSGSNKLYSGS----RDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNN 175 (371)
Q Consensus 100 ~~~~~~~~~~~l~s~~----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~ 175 (371)
+-.+|+|...++|.++ ..|+|.||- ++|++.+...-+- .+.+++|+|
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~----------------------------hatSLCWHp 69 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV----------------------------HATSLCWHP 69 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccce----------------------------ehhhhccCh
Confidence 3456888888888776 457888885 5666443322111 267899999
Q ss_pred C--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECC
Q 041206 176 D--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLD 244 (371)
Q Consensus 176 ~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~ 244 (371)
. .|+.|=.-|.+.+|...+. +.......|. +|..+.|+++|. ++++ ..-|.+.+|...
T Consensus 70 e~~vLa~gwe~g~~~v~~~~~~----e~htv~~th~a~i~~l~wS~~G~~l~t~-------d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 70 EEFVLAQGWEMGVSDVQKTNTT----ETHTVVETHPAPIQGLDWSHDGTVLMTL-------DNPGSVHLWRYD 131 (1416)
T ss_pred HHHHHhhccccceeEEEecCCc----eeeeeccCCCCCceeEEecCCCCeEEEc-------CCCceeEEEEee
Confidence 9 7778888899999998876 5555566777 999999999996 8999 899999999876
No 314
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.25 E-value=0.00041 Score=63.44 Aligned_cols=118 Identities=19% Similarity=0.148 Sum_probs=80.4
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEe
Q 041206 95 HKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVN 174 (371)
Q Consensus 95 h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~ 174 (371)
|...|.--+++..+++++.|+.-|.+++|+-..++....-... .++.+..+.++
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~--------------------------~~~~~~~~~vs 85 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEG--------------------------ATGITCVRSVS 85 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccC--------------------------ccceEEEEEec
Confidence 3445555566778899999999999999997766544332211 11224455566
Q ss_pred CC--EEEEEeCCCeEEEEeccCCCCcc-eeeEEEe-cCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCC
Q 041206 175 ND--LLFAGSEGGVISVWKGTFVANPF-KQVASIR-APL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDN 245 (371)
Q Consensus 175 ~~--~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~-~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~ 245 (371)
+. +++.|+..|.|.++.+....... ..+.... .|. .|++++|+++++ +++| ...|+|..-.+.+
T Consensus 86 ~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysG-------D~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 86 SVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSG-------DSQGKVVLTELDS 155 (726)
T ss_pred chhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeec-------CCCceEEEEEech
Confidence 65 88888999999999887743221 1222222 256 999999999995 9999 7888877766554
No 315
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.24 E-value=0.0014 Score=59.17 Aligned_cols=148 Identities=10% Similarity=-0.023 Sum_probs=85.8
Q ss_pred CeEEEEEcCCCCE-EEEEeC---CCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEE
Q 041206 98 AVTNVGLPSGSNK-LYSGSR---DGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVV 173 (371)
Q Consensus 98 ~V~~~~~~~~~~~-l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~ 173 (371)
.+..-.|+|||+. ++..+. +..|.++|+.+++......... ......|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g----------------------------~~~~~~~ 240 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG----------------------------MLVVSDV 240 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC----------------------------cEEeeEE
Confidence 7788999999985 554443 3568899998887655443222 1334567
Q ss_pred eCC---EEEEEeCC--CeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCC--CeEEEEECC
Q 041206 174 NND---LLFAGSEG--GVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCG--HTTRTWNLD 244 (371)
Q Consensus 174 ~~~---~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~d--g~i~iwd~~ 244 (371)
+|+ .+++.+.+ ..|.++|+.++ + ...+..+. ......|+|||+ ++... ... ..|++.|+.
T Consensus 241 SPDG~~la~~~~~~g~~~Iy~~dl~~g----~-~~~LT~~~~~d~~p~~SPDG~~I~F~S------dr~g~~~Iy~~dl~ 309 (419)
T PRK04043 241 SKDGSKLLLTMAPKGQPDIYLYDTNTK----T-LTQITNYPGIDVNGNFVEDDKRIVFVS------DRLGYPNIFMKKLN 309 (419)
T ss_pred CCCCCEEEEEEccCCCcEEEEEECCCC----c-EEEcccCCCccCccEECCCCCEEEEEE------CCCCCceEEEEECC
Confidence 776 33333333 56777788765 2 22333333 334567999996 43330 222 278888998
Q ss_pred CceEEEEeecCCCcEEEEEEc--CCeEEEEeCC---------CcEEEEEccCCC
Q 041206 245 NLECVQTLKGHSDTVTSLLFW--DEYLFSSSLD---------ETIKIWLYTHTK 287 (371)
Q Consensus 245 ~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d---------g~i~iwd~~~~~ 287 (371)
+++..+.... ... ...|+ +++|+..+.. ..|.+.|+....
T Consensus 310 ~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 310 SGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred CCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 8776443321 111 23566 6666655543 256777765544
No 316
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.22 E-value=0.0023 Score=54.03 Aligned_cols=190 Identities=17% Similarity=0.179 Sum_probs=115.9
Q ss_pred CeeEEEEeCC--EEEEEeC---CCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEE
Q 041206 167 SVNALVVNND--LLFAGSE---GGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTR 239 (371)
Q Consensus 167 ~v~~~~~~~~--~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~ 239 (371)
.++-++++++ .|.++.. +|.|.-|.+......+..+....... +.+.++++++++ ++++ ....|.|.
T Consensus 41 nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~A------nY~~g~v~ 114 (346)
T COG2706 41 NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVA------NYHSGSVS 114 (346)
T ss_pred CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEE------EccCceEE
Confidence 4667788877 5555544 46777777765432223333333333 558899999997 4443 15678999
Q ss_pred EEECCC-ceE---EEEeecCCCc----------EEEEEEc--CCeEEEEeC-CCcEEEEEccCCCCcc-------eecce
Q 041206 240 TWNLDN-LEC---VQTLKGHSDT----------VTSLLFW--DEYLFSSSL-DETIKIWLYTHTKNNA-------ELSSL 295 (371)
Q Consensus 240 iwd~~~-~~~---~~~~~~~~~~----------v~~~~~~--~~~l~s~~~-dg~i~iwd~~~~~~~~-------~~~~~ 295 (371)
++-++. |.+ ++.+ .|.+. +.+..+. +++|++... --+|.+|++..+.... .-..-
T Consensus 115 v~p~~~dG~l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GP 193 (346)
T COG2706 115 VYPLQADGSLQPVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGP 193 (346)
T ss_pred EEEcccCCccccceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCc
Confidence 999865 332 2222 24444 6677777 567877763 3469999987443211 11122
Q ss_pred EEEEecCCCCEEEE-ecCCCeEEEEEcCCc--c--eeeeec-------CCceEEEEEeCCCC-eEEeeC-CCCcEEEEEc
Q 041206 296 FGMLDAEAKPVLFS-SGKDSAIRLYELPSF--K--LRARIF-------SRREVEVDQIGPAG-LFFPGD-ASGSVGVWKW 361 (371)
Q Consensus 296 ~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~--~--~~~~~~-------~~~~v~~~~~s~~~-~l~~~~-~dg~i~iw~~ 361 (371)
.-+.+++++++... .--+++|.+|..+.. + .++.+. ......++.++||| +|.+.. ....|.+|.+
T Consensus 194 RHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V 273 (346)
T COG2706 194 RHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSV 273 (346)
T ss_pred ceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence 33456666656554 456899999998873 1 222221 25678899999999 555554 3447888887
Q ss_pred cc
Q 041206 362 LL 363 (371)
Q Consensus 362 ~~ 363 (371)
..
T Consensus 274 ~~ 275 (346)
T COG2706 274 DP 275 (346)
T ss_pred cC
Confidence 64
No 317
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=7.7e-05 Score=68.92 Aligned_cols=140 Identities=13% Similarity=0.129 Sum_probs=96.7
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC-------E
Q 041206 105 PSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND-------L 177 (371)
Q Consensus 105 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~-------~ 177 (371)
.-+|.+++|||.||+|.|-.+.+.+...++..+.+ +.+++++|+ .
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rp----------------------------iksial~Pd~~~~~sk~ 131 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRP----------------------------IKSIALHPDFSRQQSKQ 131 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEecCCc----------------------------ceeEEeccchhhhhhhh
Confidence 55799999999999999999998887777665544 778888887 7
Q ss_pred EEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEeecCC
Q 041206 178 LFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHS 256 (371)
Q Consensus 178 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~ 256 (371)
+++|+..| +.++.-+-... ...+ .+.... +|.++.|.. .+++= ..|--|++||+.+++.+..++...
T Consensus 132 fv~GG~ag-lvL~er~wlgn-k~~v-~l~~~eG~I~~i~W~g--~lIAW-------and~Gv~vyd~~~~~~l~~i~~p~ 199 (846)
T KOG2066|consen 132 FVSGGMAG-LVLSERNWLGN-KDSV-VLSEGEGPIHSIKWRG--NLIAW-------ANDDGVKVYDTPTRQRLTNIPPPS 199 (846)
T ss_pred eeecCcce-EEEehhhhhcC-ccce-eeecCccceEEEEecC--cEEEE-------ecCCCcEEEeccccceeeccCCCC
Confidence 89999888 77765332211 0122 333334 899999986 33333 445558999999988887776443
Q ss_pred CcE------EEEEEcCCeEEEEeCCCcEEEEEcc
Q 041206 257 DTV------TSLLFWDEYLFSSSLDETIKIWLYT 284 (371)
Q Consensus 257 ~~v------~~~~~~~~~l~s~~~dg~i~iwd~~ 284 (371)
..+ ..+.|.++.-+.-+...+|++..++
T Consensus 200 ~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 200 QSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIK 233 (846)
T ss_pred CCCCcccCCCceEecCCCeEEEecCCeEEEEEEe
Confidence 333 3466665444444566678998887
No 318
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.16 E-value=0.0027 Score=57.36 Aligned_cols=187 Identities=10% Similarity=-0.017 Sum_probs=101.7
Q ss_pred CeeEEEEeCC--E-EEEEeCC---CeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eE-ecccceeeeeCCCeE
Q 041206 167 SVNALVVNND--L-LFAGSEG---GVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WN-SKEEAAVFEFCGHTT 238 (371)
Q Consensus 167 ~v~~~~~~~~--~-l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~~~~~~~~dg~i 238 (371)
....-.|+|+ . ++..+.+ ..|.++|+.++ +...............|+|||+ ++ +. .. ..+..|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg----~~~~lt~~~g~~~~~~~SPDG~~la~~~-~~----~g~~~I 259 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTG----KKEKIASSQGMLVVSDVSKDGSKLLLTM-AP----KGQPDI 259 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCC----cEEEEecCCCcEEeeEECCCCCEEEEEE-cc----CCCcEE
Confidence 4567788887 3 5544433 56888999876 3322222222556678999995 43 33 00 234678
Q ss_pred EEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEe-CCC--cEEEEEccCCCCccee--cceEEEEecCCCCEEEEec
Q 041206 239 RTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSS-LDE--TIKIWLYTHTKNNAEL--SSLFGMLDAEAKPVLFSSG 311 (371)
Q Consensus 239 ~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg--~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~ 311 (371)
+++|+.+++.. .+..+........|+ ++.|+-.+ ..+ .|.+.|+...+..... ......+++++..++++..
T Consensus 260 y~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 260 YLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSR 338 (419)
T ss_pred EEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEc
Confidence 88898877643 344333333345677 55555444 334 4666676554431111 0011235555553444443
Q ss_pred CC--------CeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeC-CCC--cEEEEEcccc
Q 041206 312 KD--------SAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGD-ASG--SVGVWKWLLA 364 (371)
Q Consensus 312 ~d--------~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~-~dg--~i~iw~~~~~ 364 (371)
.. ..|.+.|+.++... .+..........|+||| .|+... ..+ .+.+.++...
T Consensus 339 ~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 339 ETNNEFGKNTFNLYLISTNSDYIR-RLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CCCcccCCCCcEEEEEECCCCCeE-ECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 32 36888898887643 33322333458899999 443333 223 4666666553
No 319
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.15 E-value=5.5e-05 Score=70.82 Aligned_cols=180 Identities=12% Similarity=0.091 Sum_probs=122.4
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCCEEEEEeCCCeEE
Q 041206 109 NKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNNDLLFAGSEGGVIS 188 (371)
Q Consensus 109 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~l~~~~~dg~v~ 188 (371)
..++-|+....+...|+.+.+..+... +..+.|.-+..+...+++|...|+|.
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~---------------------------v~a~~v~imR~Nnr~lf~G~t~G~V~ 200 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTN---------------------------VSASGVTIMRYNNRNLFCGDTRGTVF 200 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeee---------------------------ccCCceEEEEecCcEEEeecccceEE
Confidence 445555555556666666555544433 33335677777778999999999999
Q ss_pred EEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccc--eeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc
Q 041206 189 VWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEA--AVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW 265 (371)
Q Consensus 189 iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~--~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 265 (371)
+-|.++. +.+.++..|+ .+..+.... +.|++++-. .-.-..|.-|+|||++..+.+.-+.-+.++ .-+.|.
T Consensus 201 LrD~~s~----~~iht~~aHs~siSDfDv~G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~ 274 (1118)
T KOG1275|consen 201 LRDPNSF----ETIHTFDAHSGSISDFDVQG-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFH 274 (1118)
T ss_pred eecCCcC----ceeeeeeccccceeeeeccC-CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhc
Confidence 9999998 8999999999 888887765 345554110 001134667899999988777666655554 345555
Q ss_pred ---CCeEEEEeCCCcEEEEE---ccCCCC----ccee-cceEEEEecCCCCEEEEecCCCeEEEEEc
Q 041206 266 ---DEYLFSSSLDETIKIWL---YTHTKN----NAEL-SSLFGMLDAEAKPVLFSSGKDSAIRLYEL 321 (371)
Q Consensus 266 ---~~~l~s~~~dg~i~iwd---~~~~~~----~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 321 (371)
...++.++..|...+-| +..+.. .... ..+...-.+..+..++.|..+|.|.+|.-
T Consensus 275 Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 275 PSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 56889999999999998 433321 1111 22444455556669999999999999973
No 320
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.12 E-value=9.8e-06 Score=45.39 Aligned_cols=39 Identities=36% Similarity=0.580 Sum_probs=35.3
Q ss_pred ceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 041206 86 LATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWD 124 (371)
Q Consensus 86 ~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd 124 (371)
.+++..+.+|...|.++.|.++++++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 356778889999999999999999999999999999996
No 321
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.08 E-value=0.0023 Score=57.85 Aligned_cols=221 Identities=12% Similarity=0.062 Sum_probs=107.5
Q ss_pred eeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeE
Q 041206 91 KLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNA 170 (371)
Q Consensus 91 ~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~ 170 (371)
.+-...-....+.++|++++++.++ ||.-.|+.....+....-. -..
T Consensus 27 ~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~G~--------------------------------g~~ 73 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAFGS--------------------------------GLS 73 (443)
T ss_dssp EEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEEEE---------------------------------SE
T ss_pred cCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccccCc--------------------------------eeE
Confidence 3334455688999999999999854 6778888744333322211 345
Q ss_pred EEEeCC-EEEEEeCCCeEEEE-eccCCCCcceeeEEEecCcceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceE
Q 041206 171 LVVNND-LLFAGSEGGVISVW-KGTFVANPFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLEC 248 (371)
Q Consensus 171 ~~~~~~-~l~~~~~dg~v~iw-d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~ 248 (371)
+.|.++ .+++-...+.|.++ ++... ....++....+..+-. |.++.. ..++.|.+||..+++.
T Consensus 74 ~vw~~~n~yAv~~~~~~I~I~kn~~~~-----~~k~i~~~~~~~~If~---G~LL~~-------~~~~~i~~yDw~~~~~ 138 (443)
T PF04053_consen 74 FVWSSRNRYAVLESSSTIKIYKNFKNE-----VVKSIKLPFSVEKIFG---GNLLGV-------KSSDFICFYDWETGKL 138 (443)
T ss_dssp EEE-TSSEEEEE-TTS-EEEEETTEE------TT-----SS-EEEEE----SSSEEE-------EETTEEEEE-TTT--E
T ss_pred EEEecCccEEEEECCCeEEEEEcCccc-----cceEEcCCcccceEEc---CcEEEE-------ECCCCEEEEEhhHcce
Confidence 667665 77777778889886 34322 2122222212222222 554444 5566899999999999
Q ss_pred EEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCC-----CCcceecceEEEEecCCCCEEEEecCCCeEEEEEc
Q 041206 249 VQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHT-----KNNAELSSLFGMLDAEAKPVLFSSGKDSAIRLYEL 321 (371)
Q Consensus 249 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 321 (371)
+.++... +|..+.|+ +++++-.+.+ .+.+++.... ...+.-..+....--.. .+-+|..++.+.+|..
T Consensus 139 i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~--~IkSg~W~~d~fiYtT 213 (443)
T PF04053_consen 139 IRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISE--RIKSGCWVEDCFIYTT 213 (443)
T ss_dssp EEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S----SEEEEETTEEEEE-
T ss_pred eeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecc--eeEEEEEEcCEEEEEc
Confidence 9988743 48999999 5677776654 6778775444 11111111111111010 2333333334444444
Q ss_pred CCcceee-------eec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccc
Q 041206 322 PSFKLRA-------RIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 322 ~~~~~~~-------~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~ 365 (371)
.+ ++.. .+. -..++.-+.+.|.. .+.....|+.|..+.+....
T Consensus 214 ~~-~lkYl~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 214 SN-HLKYLVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp TT-EEEEEETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HHH
T ss_pred CC-eEEEEEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHHH
Confidence 43 2222 111 15677777787855 88888899999888876543
No 322
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.08 E-value=0.0046 Score=52.16 Aligned_cols=200 Identities=12% Similarity=0.082 Sum_probs=112.0
Q ss_pred EeeeCccCCeEEEEEcCCCCEEEEEe-----CCCcEEEEECC-CCceEEEEeCCC--e-eEEEeecCCEEEEecCCcEEE
Q 041206 90 MKLNGHKKAVTNVGLPSGSNKLYSGS-----RDGRVSVWDRD-SGRCVNVITNGA--E-IGCLISEGSWVFLGLPNAVKS 160 (371)
Q Consensus 90 ~~l~~h~~~V~~~~~~~~~~~l~s~~-----~dg~v~iwd~~-~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~i~~ 160 (371)
+.|.|| -.||+||++|++.- ..|.|-|||.. +.+.+.++.... + -..+.+++..|++++.+.
T Consensus 50 RHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI--- 120 (305)
T PF07433_consen 50 RHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGI--- 120 (305)
T ss_pred CEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCC---
Confidence 455565 35999999999963 45889999998 556777776532 1 222345665666554332
Q ss_pred EEeCCCCeeEEEEeCC----EEEEEeCCCeEEEEeccCCCCcceeeEE--E--ecCc-ceEEEEecCCceeEecccceee
Q 041206 161 WRVNAASVNALVVNND----LLFAGSEGGVISVWKGTFVANPFKQVAS--I--RAPL-WFCSLSSSNDTRWNSKEEAAVF 231 (371)
Q Consensus 161 ~~~~~~~v~~~~~~~~----~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~--~~~~-~v~~~~~~~~~~l~~~~~~~~~ 231 (371)
.-+|+ .|=..+-+-.+...|..++ +.+.. + ..|. .+..+++.++|.++.+.+.-.-
T Consensus 121 -----------~Thpd~GR~kLNl~tM~psL~~ld~~sG----~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~ 185 (305)
T PF07433_consen 121 -----------ETHPDSGRAKLNLDTMQPSLVYLDARSG----ALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGD 185 (305)
T ss_pred -----------ccCcccCceecChhhcCCceEEEecCCC----ceeeeeecCccccccceeeEEecCCCcEEEEEecCCC
Confidence 11111 1222233444555666666 44544 3 3356 8999999999986665111000
Q ss_pred e-eCCCeEEEEECCCceEEEEee-------cCCCcEEEEEEc--CCeE-EEEeCCCcEEEEEccCCCCc--ceecceEEE
Q 041206 232 E-FCGHTTRTWNLDNLECVQTLK-------GHSDTVTSLLFW--DEYL-FSSSLDETIKIWLYTHTKNN--AELSSLFGM 298 (371)
Q Consensus 232 ~-~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~--~~~l-~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~ 298 (371)
. ..--.+.+++.. +.+..+. .-.+.+-+|+++ +.++ +|+-..+.+.+||..+.+-. ..+...+.+
T Consensus 186 ~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGv 263 (305)
T PF07433_consen 186 PGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGV 263 (305)
T ss_pred CCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeee
Confidence 0 000112223222 2222221 234578899998 4444 66667889999998887743 233455556
Q ss_pred EecCCCCEEEEecCCCeEE
Q 041206 299 LDAEAKPVLFSSGKDSAIR 317 (371)
Q Consensus 299 ~~~~~~~~l~~~~~d~~i~ 317 (371)
....++ ++++.+. |.+.
T Consensus 264 a~~~~~-f~~ssG~-G~~~ 280 (305)
T PF07433_consen 264 APTDDG-FLVSSGQ-GQLI 280 (305)
T ss_pred eecCCc-eEEeCCC-ccEE
Confidence 666665 5555444 4433
No 323
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.02 E-value=0.00066 Score=47.66 Aligned_cols=98 Identities=19% Similarity=0.191 Sum_probs=65.4
Q ss_pred eEEEEEcC-CC---CEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEe
Q 041206 99 VTNVGLPS-GS---NKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVN 174 (371)
Q Consensus 99 V~~~~~~~-~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~ 174 (371)
|++|++.. ++ +.|+.||.|..||+|+- .+.+..+.... .|.+++..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~----------------------------~v~~L~~~ 51 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETD----------------------------KVTSLCSL 51 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEeccc----------------------------ceEEEEEc
Confidence 67777754 22 68999999999999984 46666666433 46666665
Q ss_pred CC-EEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEe---cCCce--eEecccceeeeeCCCeEE
Q 041206 175 ND-LLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSS---SNDTR--WNSKEEAAVFEFCGHTTR 239 (371)
Q Consensus 175 ~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~--l~~~~~~~~~~~~dg~i~ 239 (371)
.. .++.+..+|+|-+|+-... +-..+....+.++.+ ..||. |++| -.+|.|-
T Consensus 52 ~~~~F~Y~l~NGTVGvY~~~~R------lWRiKSK~~~~~~~~~D~~gdG~~eLI~G-------wsnGkve 109 (111)
T PF14783_consen 52 GGGRFAYALANGTVGVYDRSQR------LWRIKSKNQVTSMAFYDINGDGVPELIVG-------WSNGKVE 109 (111)
T ss_pred CCCEEEEEecCCEEEEEeCcce------eeeeccCCCeEEEEEEcCCCCCceEEEEE-------ecCCeEE
Confidence 55 8888999999999976432 222332224444444 33553 8888 8888774
No 324
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.02 E-value=0.0059 Score=54.45 Aligned_cols=160 Identities=14% Similarity=0.104 Sum_probs=92.9
Q ss_pred eeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEee--c------CCCcEEEEEEc-----
Q 041206 200 KQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLK--G------HSDTVTSLLFW----- 265 (371)
Q Consensus 200 ~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~--~------~~~~v~~~~~~----- 265 (371)
.+...+.... +|++++.+.-|.++.| +.+|.+.|.|+|....++.-. . ....++++.|.
T Consensus 77 ~P~~l~~~~~g~vtal~~S~iGFvaig-------y~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~ 149 (395)
T PF08596_consen 77 LPLTLLDAKQGPVTALKNSDIGFVAIG-------YESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLG 149 (395)
T ss_dssp EEEEEE---S-SEEEEEE-BTSEEEEE-------ETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-T
T ss_pred CchhheeccCCcEeEEecCCCcEEEEE-------ecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecC
Confidence 3444444555 8999999888888999 999999999999888776532 1 23468888886
Q ss_pred C-----CeEEEEeCCCcEEEEEccCCCC--------------cceecceEEEEec----------------C--CCCEEE
Q 041206 266 D-----EYLFSSSLDETIKIWLYTHTKN--------------NAELSSLFGMLDA----------------E--AKPVLF 308 (371)
Q Consensus 266 ~-----~~l~s~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~~----------------~--~~~~l~ 308 (371)
+ -.+++|...|.+.+|.+..... ...+..+..+... . .-+-++
T Consensus 150 ~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~v 229 (395)
T PF08596_consen 150 GDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYV 229 (395)
T ss_dssp TSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEE
T ss_pred CCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEE
Confidence 1 2788899999999998642111 1111112211100 0 001233
Q ss_pred EecCCCeEEEEEcCCcceeeeecCC-ceEEEEEeC-----CCC-eEEeeCCCCcEEEEEccccce
Q 041206 309 SSGKDSAIRLYELPSFKLRARIFSR-REVEVDQIG-----PAG-LFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 309 ~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s-----~~~-~l~~~~~dg~i~iw~~~~~~~ 366 (371)
....+..++++...+.+...+.... -....+.+- ..+ .|++-..+|.|++|.+..-+.
T Consensus 230 VvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 230 VVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp EEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred EEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence 3344678999999988877776632 233334442 234 888888999999999876443
No 325
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=8.7e-05 Score=63.16 Aligned_cols=90 Identities=8% Similarity=0.066 Sum_probs=75.5
Q ss_pred EEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce--eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEE
Q 041206 187 ISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR--WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLL 263 (371)
Q Consensus 187 v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 263 (371)
+++.+-.+. +...-+..+. .|..++|+|... +..+ +.+..|+|.|+++...+..+..+ .++.+++
T Consensus 175 v~~l~~~~f----kssq~lp~~g~~IrdlafSp~~~GLl~~a-------sl~nkiki~dlet~~~vssy~a~-~~~wSC~ 242 (463)
T KOG1645|consen 175 VQKLESHDF----KSSQILPGEGSFIRDLAFSPFNEGLLGLA-------SLGNKIKIMDLETSCVVSSYIAY-NQIWSCC 242 (463)
T ss_pred eEEeccCCc----chhhcccccchhhhhhccCccccceeeee-------ccCceEEEEecccceeeeheecc-CCceeee
Confidence 666665555 4555667777 999999999765 6677 99999999999999999888877 8899999
Q ss_pred Ec---CCeEEEEeCCCcEEEEEccCCCC
Q 041206 264 FW---DEYLFSSSLDETIKIWLYTHTKN 288 (371)
Q Consensus 264 ~~---~~~l~s~~~dg~i~iwd~~~~~~ 288 (371)
|. .+++..|-.+|.|.+||++.++.
T Consensus 243 wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 243 WDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred eccCCcceeEEeccCceEEEEEccCCCc
Confidence 98 57899999999999999988763
No 326
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.96 E-value=0.011 Score=51.81 Aligned_cols=164 Identities=16% Similarity=0.172 Sum_probs=100.5
Q ss_pred CeEEEEeccCCC---CcceeeEEEecCcceEEEEecCCceeEecccceeeeeCCCeEEEEECCCce-EEEEee-cCCCcE
Q 041206 185 GVISVWKGTFVA---NPFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLE-CVQTLK-GHSDTV 259 (371)
Q Consensus 185 g~v~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~-~~~~~~-~~~~~v 259 (371)
|.|.++++.... ...+.+.......+|++++... ++++++ .++.|++|++...+ ....-. .....+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~-~~lv~~--------~g~~l~v~~l~~~~~l~~~~~~~~~~~i 132 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFN-GRLVVA--------VGNKLYVYDLDNSKTLLKKAFYDSPFYI 132 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEET-TEEEEE--------ETTEEEEEEEETTSSEEEEEEE-BSSSE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhC-CEEEEe--------ecCEEEEEEccCcccchhhheecceEEE
Confidence 889999998841 1223333333333888888874 555443 46899999998777 433222 233478
Q ss_pred EEEEEcCCeEEEEeCCCcEEEEEccCCCC--------cceecceEEEEec-CCCCEEEEecCCCeEEEEEcCC-------
Q 041206 260 TSLLFWDEYLFSSSLDETIKIWLYTHTKN--------NAELSSLFGMLDA-EAKPVLFSSGKDSAIRLYELPS------- 323 (371)
Q Consensus 260 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~iwd~~~------- 323 (371)
.++...+++++.|.....+.++.++.... ... ..+..+..- ++. .++++..+|.+.++....
T Consensus 133 ~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~-~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~ 210 (321)
T PF03178_consen 133 TSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQP-RWVTAAEFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRD 210 (321)
T ss_dssp EEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS--BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTT
T ss_pred EEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCC-ccEEEEEEecCCc-EEEEEcCCCeEEEEEECCCCccccc
Confidence 88888899999999988898886554221 111 123333333 443 899999999999998763
Q ss_pred c----ceeeeecCCceEEEE---EeCC--CC-------eEEeeCCCCcEEEE
Q 041206 324 F----KLRARIFSRREVEVD---QIGP--AG-------LFFPGDASGSVGVW 359 (371)
Q Consensus 324 ~----~~~~~~~~~~~v~~~---~~s~--~~-------~l~~~~~dg~i~iw 359 (371)
+ .....+.....|+++ .+.| .+ .++.++.+|.|.+.
T Consensus 211 ~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 211 GDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp TTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 1 123344447778888 6666 22 38888899999843
No 327
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.93 E-value=0.0016 Score=45.70 Aligned_cols=87 Identities=24% Similarity=0.310 Sum_probs=66.3
Q ss_pred EEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEeecCC
Q 041206 177 LLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHS 256 (371)
Q Consensus 177 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~ 256 (371)
.|++|+.|..|++|+-. +.+..+.....|.+++....++++.+ ..+|+|-+|+-. +.+...+. .
T Consensus 17 eLlvGs~D~~IRvf~~~------e~~~Ei~e~~~v~~L~~~~~~~F~Y~-------l~NGTVGvY~~~--~RlWRiKS-K 80 (111)
T PF14783_consen 17 ELLVGSDDFEIRVFKGD------EIVAEITETDKVTSLCSLGGGRFAYA-------LANGTVGVYDRS--QRLWRIKS-K 80 (111)
T ss_pred eEEEecCCcEEEEEeCC------cEEEEEecccceEEEEEcCCCEEEEE-------ecCCEEEEEeCc--ceeeeecc-C
Confidence 89999999999999865 45667777678999999888889999 999999999864 33444443 3
Q ss_pred CcEEEEEEc--C----CeEEEEeCCCcEE
Q 041206 257 DTVTSLLFW--D----EYLFSSSLDETIK 279 (371)
Q Consensus 257 ~~v~~~~~~--~----~~l~s~~~dg~i~ 279 (371)
..+.++.+. + ..|++|-.+|.|-
T Consensus 81 ~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 81 NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 346666554 1 3788888888774
No 328
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.93 E-value=0.0015 Score=61.30 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=53.0
Q ss_pred eeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 041206 46 AAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDR 125 (371)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~ 125 (371)
++++++|..+.++ .|-.-+.+.+|. .+..+.......|..+|..+.||++|..|.|+..-|.|.+|..
T Consensus 63 tSLCWHpe~~vLa----~gwe~g~~~v~~--------~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~ 130 (1416)
T KOG3617|consen 63 TSLCWHPEEFVLA----QGWEMGVSDVQK--------TNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRY 130 (1416)
T ss_pred hhhccChHHHHHh----hccccceeEEEe--------cCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEe
Confidence 3567888766443 345566788888 3344444555679999999999999999999999999999987
Q ss_pred C
Q 041206 126 D 126 (371)
Q Consensus 126 ~ 126 (371)
.
T Consensus 131 d 131 (1416)
T KOG3617|consen 131 D 131 (1416)
T ss_pred e
Confidence 5
No 329
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0082 Score=56.59 Aligned_cols=184 Identities=15% Similarity=0.182 Sum_probs=117.4
Q ss_pred eCCccceEEEEEeccCCCCccCCceeeEeeeCccCC-eEEEEEcCCCCEEEEEeCCCc-----EEEEECCCCc------e
Q 041206 63 YGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKA-VTNVGLPSGSNKLYSGSRDGR-----VSVWDRDSGR------C 130 (371)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~-V~~~~~~~~~~~l~s~~~dg~-----v~iwd~~~~~------~ 130 (371)
.|..++-+...+ .+.+.++.++.+... |..+....+.++|++-+.|+. |+||+++.-+ +
T Consensus 40 igt~~G~V~~Ln---------~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c 110 (933)
T KOG2114|consen 40 IGTADGRVVILN---------SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQC 110 (933)
T ss_pred EeeccccEEEec---------ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcce
Confidence 355666666655 677788899999888 555555555578998877654 8999987432 2
Q ss_pred EE---EEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEe--ccCCCCcceeeE
Q 041206 131 VN---VITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVWK--GTFVANPFKQVA 203 (371)
Q Consensus 131 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd--~~~~~~~~~~~~ 203 (371)
+. .+....+ .+..++.+++++.+ .+++|-.+|.|..+. +...... +...
T Consensus 111 ~~~~ri~~~~np-----------------------~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs-r~~~ 166 (933)
T KOG2114|consen 111 LYEHRIFTIKNP-----------------------TNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS-RQDY 166 (933)
T ss_pred eeeeeeeccCCC-----------------------CCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc-ceee
Confidence 21 1110000 13346788888888 889999999999884 2222110 2222
Q ss_pred EEecCcceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceE-EEEeecCCCcEEEEEEc-CCe-EEEEeCCCcEE
Q 041206 204 SIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLEC-VQTLKGHSDTVTSLLFW-DEY-LFSSSLDETIK 279 (371)
Q Consensus 204 ~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~-~~~-l~s~~~dg~i~ 279 (371)
...+..+|+.+++..+++ ++-. ..-..|.+|.+....+ ...+..|...+.|..++ +.. +++++ +..+.
T Consensus 167 ~~~~~~pITgL~~~~d~~s~lFv-------~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~ 238 (933)
T KOG2114|consen 167 SHRGKEPITGLALRSDGKSVLFV-------ATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLY 238 (933)
T ss_pred eccCCCCceeeEEecCCceeEEE-------EecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEE
Confidence 233333999999999886 2222 3456788998884442 45577788899999998 444 44443 34688
Q ss_pred EEEccCCC
Q 041206 280 IWLYTHTK 287 (371)
Q Consensus 280 iwd~~~~~ 287 (371)
+|+....+
T Consensus 239 fY~sd~~~ 246 (933)
T KOG2114|consen 239 FYDSDGRG 246 (933)
T ss_pred EEcCCCcc
Confidence 99866433
No 330
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.84 E-value=0.0026 Score=57.53 Aligned_cols=137 Identities=17% Similarity=0.074 Sum_probs=80.2
Q ss_pred ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc-CCeEEEEeCCCcEEEEE-ccCCC
Q 041206 210 WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW-DEYLFSSSLDETIKIWL-YTHTK 287 (371)
Q Consensus 210 ~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd-~~~~~ 287 (371)
....+.++|++++++. ..+|.-.++.....+.... +.-....|. .+.+++-....+|.++. ++...
T Consensus 34 ~p~~ls~npngr~v~V-------~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-------CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEV 101 (443)
T ss_dssp --SEEEE-TTSSEEEE-------EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-T
T ss_pred CCeeEEECCCCCEEEE-------EcCCEEEEEEccCCccccc-----CceeEEEEecCccEEEEECCCeEEEEEcCcccc
Confidence 6789999999986666 6788888998655444332 223456676 57788888889999963 43332
Q ss_pred --CcceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccc
Q 041206 288 --NNAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 288 --~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
.......+..++. +.+|...+. +.|.+||..+++.+.++... +|..+.|+++| +++..+.+ .+.|++....
T Consensus 102 ~k~i~~~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 102 VKSIKLPFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp T-----SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred ceEEcCCcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence 1111112333333 435655544 48999999999999998754 49999999999 77777654 7888776554
No 331
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.84 E-value=0.0023 Score=57.70 Aligned_cols=73 Identities=18% Similarity=0.273 Sum_probs=59.3
Q ss_pred CccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEE
Q 041206 94 GHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVV 173 (371)
Q Consensus 94 ~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~ 173 (371)
.....|.+++++|+.+.|+.|+.||+|.+||...+..... ... -..+.++|
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~----------------------------~~P~~iaW 307 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAE----------------------------FIPTLIAW 307 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eec----------------------------ccceEEEE
Confidence 4778899999999999999999999999999876643322 111 12678899
Q ss_pred eCC--EEEEEeCCCeEEEEeccCC
Q 041206 174 NND--LLFAGSEGGVISVWKGTFV 195 (371)
Q Consensus 174 ~~~--~l~~~~~dg~v~iwd~~~~ 195 (371)
+|+ .+++|+..|.+.+||+.-.
T Consensus 308 Hp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 308 HPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cCCCcEEEEEcCCceEEEEEeecC
Confidence 998 8999999999999998755
No 332
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.83 E-value=1.6e-05 Score=71.51 Aligned_cols=189 Identities=11% Similarity=0.140 Sum_probs=120.2
Q ss_pred CeeEEEEeCC----EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc-e-eEecccceeeeeCCCeEE
Q 041206 167 SVNALVVNND----LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT-R-WNSKEEAAVFEFCGHTTR 239 (371)
Q Consensus 167 ~v~~~~~~~~----~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~-l~~~~~~~~~~~~dg~i~ 239 (371)
.+.|+++.-+ .+++|..+|.|.+-.++.... .-.....++. +.++++|++-. . |++|-.. .-.|..+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd--Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldk---hrnds~~~ 132 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD--SSAEVTPGYARPCTSLAWNELDTNHLAAGLDK---HRNDSSLK 132 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCccc--ccceecccccccccccccccccHHHHHhhhhh---hcccCCcc
Confidence 3555655433 789999999999998887632 1223445566 89999999953 3 6666111 14567899
Q ss_pred EEECCCc--eEEE--Eeec-CCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC------cceecceEEEEecCCCCE
Q 041206 240 TWNLDNL--ECVQ--TLKG-HSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN------NAELSSLFGMLDAEAKPV 306 (371)
Q Consensus 240 iwd~~~~--~~~~--~~~~-~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~ 306 (371)
|||+.++ .+.. .|.+ -.....+++|. .+++++|.....+.++|++.... ......++ ..|-...+
T Consensus 133 Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~t--Vdp~~~nY 210 (783)
T KOG1008|consen 133 IWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGIT--VDPFSPNY 210 (783)
T ss_pred ceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccce--ecCCCCCc
Confidence 9999876 2221 1222 23345577777 56788888888999999884332 11122333 23323446
Q ss_pred EEEecCCCeEEEEE-cCCcc-eeeeecC-----CceEEEEEeCCCC--eEEeeCCC-CcEEEEEccc
Q 041206 307 LFSSGKDSAIRLYE-LPSFK-LRARIFS-----RREVEVDQIGPAG--LFFPGDAS-GSVGVWKWLL 363 (371)
Q Consensus 307 l~~~~~d~~i~iwd-~~~~~-~~~~~~~-----~~~v~~~~~s~~~--~l~~~~~d-g~i~iw~~~~ 363 (371)
+++-. ||.|.+|| ..+.+ ++..+.+ ...+..++|+|.. .+++...| ++|+.+++..
T Consensus 211 ~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 211 FCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred eeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 66554 99999999 43332 3333333 2348999999976 77777754 6889998753
No 333
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.82 E-value=0.024 Score=51.47 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=55.7
Q ss_pred ceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccc
Q 041206 294 SLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 294 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~ 365 (371)
.+.++..++.+..++.|+.||.|.+||...+..... ...-.++.++|+|+| .+++|+..|.+.+||+.-..
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 344555666666999999999999999877643322 344567899999999 99999999999999987543
No 334
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.82 E-value=0.019 Score=50.26 Aligned_cols=129 Identities=12% Similarity=0.152 Sum_probs=88.2
Q ss_pred CCEEEEEeC----------CCcEEEEECCCC-------ceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCC---
Q 041206 108 SNKLYSGSR----------DGRVSVWDRDSG-------RCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAAS--- 167 (371)
Q Consensus 108 ~~~l~s~~~----------dg~v~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--- 167 (371)
..+++.|.. .|.|.++++... +.+......+++.++..-+..++++..+.+.+|++....
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~ 121 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLL 121 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccch
Confidence 467777642 288999999884 233444557889999877777888889999999998775
Q ss_pred ----------eeEEEEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc-eeEecccceeeeeCC
Q 041206 168 ----------VNALVVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT-RWNSKEEAAVFEFCG 235 (371)
Q Consensus 168 ----------v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~l~~~~~~~~~~~~d 235 (371)
+.++....+++++|.....+.++...........+.. .... .++++.+-+++ .++++ ..+
T Consensus 122 ~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~-------D~~ 193 (321)
T PF03178_consen 122 KKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVG-------DKD 193 (321)
T ss_dssp EEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEE-------ETT
T ss_pred hhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEe-cCCCccEEEEEEecCCcEEEEE-------cCC
Confidence 4445555668899998888888866543211122221 1223 78888888655 58888 999
Q ss_pred CeEEEEECC
Q 041206 236 HTTRTWNLD 244 (371)
Q Consensus 236 g~i~iwd~~ 244 (371)
|.+.++...
T Consensus 194 gnl~~l~~~ 202 (321)
T PF03178_consen 194 GNLFVLRYN 202 (321)
T ss_dssp SEEEEEEE-
T ss_pred CeEEEEEEC
Confidence 999998875
No 335
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.80 E-value=0.0078 Score=58.88 Aligned_cols=226 Identities=13% Similarity=0.081 Sum_probs=121.8
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeC
Q 041206 96 KKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNN 175 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~ 175 (371)
.+.|.++.|..+++.++.+..+|.|.+-|.++......-.. ...|.+++|+|
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~v----------------------------d~GI~aaswS~ 119 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNV----------------------------DNGISAASWSP 119 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeec----------------------------cCceEEEeecC
Confidence 36899999999999999999999999998877654433221 22488999999
Q ss_pred C--EEEEEeCCCeEEEEeccCCCCcceeeEEEecC------cceEEEEecCCceeEecccceeeeeCCCeEEEEECCCce
Q 041206 176 D--LLFAGSEGGVISVWKGTFVANPFKQVASIRAP------LWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLE 247 (371)
Q Consensus 176 ~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~ 247 (371)
+ .++..+..+++.+-.-. - .++..-+-+ +..-.+-|-....-+-| ..|...-.+....+
T Consensus 120 Dee~l~liT~~~tll~mT~~-f----~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrg--------s~gr~~~~~~~~~e 186 (1265)
T KOG1920|consen 120 DEELLALITGRQTLLFMTKD-F----EPIAEKPLDADDERKSKFVNVGWGRKETQFRG--------SEGRQAARQKIEKE 186 (1265)
T ss_pred CCcEEEEEeCCcEEEEEecc-c----cchhccccccccccccccceecccccceeeec--------chhhhccccccccc
Confidence 8 77777777777654321 1 111111000 01122222221111111 11111111111100
Q ss_pred E-EEEeecCCCcEEEEEEc--CCeEEEEe----CC-CcEEEEEcc----CCCCcceecceEEEEecCCCCEEEEe---cC
Q 041206 248 C-VQTLKGHSDTVTSLLFW--DEYLFSSS----LD-ETIKIWLYT----HTKNNAELSSLFGMLDAEAKPVLFSS---GK 312 (371)
Q Consensus 248 ~-~~~~~~~~~~v~~~~~~--~~~l~s~~----~d-g~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~~l~~~---~~ 312 (371)
. +.... ..+.=+++.|- ++++++.. .+ ..|++||-. ..........- .+.+.|.+.++++- .+
T Consensus 187 k~~~~~~-~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~-~LsWkPsgs~iA~iq~~~s 264 (1265)
T KOG1920|consen 187 KALEQIE-QDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQH-SLSWKPSGSLIAAIQCKTS 264 (1265)
T ss_pred ccccchh-hccCCceEEEccCCcEEEEEEEeccCCceeEEEecccchhhcccCccccccc-ceeecCCCCeEeeeeecCC
Confidence 0 00001 11223467776 66777632 23 789999955 11111111111 22344455466664 35
Q ss_pred CCeEEEEEcCCcc---eeeeecC-CceEEEEEeCCCC-eEEe---eCCCCcEEEEEcccc
Q 041206 313 DSAIRLYELPSFK---LRARIFS-RREVEVDQIGPAG-LFFP---GDASGSVGVWKWLLA 364 (371)
Q Consensus 313 d~~i~iwd~~~~~---~~~~~~~-~~~v~~~~~s~~~-~l~~---~~~dg~i~iw~~~~~ 364 (371)
|+.|.+|..+.-+ ....+.. ..+|..++|+.++ .|+. ......|++|-+.+-
T Consensus 265 d~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 265 DSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 6689999865422 2222222 3349999999999 6666 445556999988654
No 336
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.78 E-value=0.00097 Score=63.70 Aligned_cols=127 Identities=13% Similarity=0.072 Sum_probs=89.4
Q ss_pred eCCCeEEEEECCCceEEEEeecCCCc-EEEEEEc-------CCeEEEEeCCCcEEEEEccCCCCcc---------eecce
Q 041206 233 FCGHTTRTWNLDNLECVQTLKGHSDT-VTSLLFW-------DEYLFSSSLDETIKIWLYTHTKNNA---------ELSSL 295 (371)
Q Consensus 233 ~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~-------~~~l~s~~~dg~i~iwd~~~~~~~~---------~~~~~ 295 (371)
.....|+-.|++.|+.+..+..|... |..++-. +...+.|-.+..+..||.+...... .....
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 35688999999999999999988754 7777654 3456777788899999988754211 11223
Q ss_pred EEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecC-CceEEEEEeCCCC--eEEeeCCCCcEEEEEcc
Q 041206 296 FGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFS-RREVEVDQIGPAG--LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 296 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~--~l~~~~~dg~i~iw~~~ 362 (371)
.++.....+ +||+|+.+|.||+||-...+-...+.+ ..+|..|..+.|| .|+|+ +..|.+++..
T Consensus 581 s~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t~ 647 (794)
T PF08553_consen 581 SCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDTL 647 (794)
T ss_pred eEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEEe
Confidence 334444455 899999999999999544332222333 7899999999999 44444 5577777753
No 337
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.71 E-value=0.024 Score=48.27 Aligned_cols=219 Identities=12% Similarity=0.076 Sum_probs=118.7
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC-EEEEEeCC
Q 041206 106 SGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND-LLFAGSEG 184 (371)
Q Consensus 106 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~-~l~~~~~d 184 (371)
..++.|+.|..+| +.+++............ ...|..+...++ .++..-.|
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~----------------------------~~~I~ql~vl~~~~~llvLsd 55 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK----------------------------LSSITQLSVLPELNLLLVLSD 55 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee----------------------------cceEEEEEEecccCEEEEEcC
Confidence 3578899999888 89998832222222221 113777888776 22222345
Q ss_pred CeEEEEeccCCCCccee--eE---------EEecCcceEEEE--ecCCc-eeEecccceeeeeCCCeEEEEECCCc----
Q 041206 185 GVISVWKGTFVANPFKQ--VA---------SIRAPLWFCSLS--SSNDT-RWNSKEEAAVFEFCGHTTRTWNLDNL---- 246 (371)
Q Consensus 185 g~v~iwd~~~~~~~~~~--~~---------~~~~~~~v~~~~--~~~~~-~l~~~~~~~~~~~~dg~i~iwd~~~~---- 246 (371)
+.+.++++......... .. .+.....+...+ -...+ ..++. .....|.+|.....
T Consensus 56 ~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~v-------a~kk~i~i~~~~~~~~~f 128 (275)
T PF00780_consen 56 GQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCV-------AVKKKILIYEWNDPRNSF 128 (275)
T ss_pred CccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEE-------EECCEEEEEEEECCcccc
Confidence 99999998765321100 00 111111444444 11222 33333 45668888877642
Q ss_pred -eEEEEeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCCccee----------------cceEEEEecCCCCEEEE
Q 041206 247 -ECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKNNAEL----------------SSLFGMLDAEAKPVLFS 309 (371)
Q Consensus 247 -~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----------------~~~~~~~~~~~~~~l~~ 309 (371)
+..+.+. -...+.+++|.++.++.+..++ ..+.|+.+....... ..+.....++ +.+|++
T Consensus 129 ~~~~ke~~-lp~~~~~i~~~~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~Ll~ 205 (275)
T PF00780_consen 129 SKLLKEIS-LPDPPSSIAFLGNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD-NEFLLC 205 (275)
T ss_pred cceeEEEE-cCCCcEEEEEeCCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC-ceEEEE
Confidence 4556665 3478899999988888887655 777887754432111 1122222232 335554
Q ss_pred ecCCCeEEEEEcCCcceee--eecCCceEEEEEeCCCCeEEeeCCCCcEEEEEccccceec
Q 041206 310 SGKDSAIRLYELPSFKLRA--RIFSRREVEVDQIGPAGLFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 310 ~~~d~~i~iwd~~~~~~~~--~~~~~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
- +..-.+.|.. |+... .+.=...+.++++... +|++.+. +.|.||++.++++..
T Consensus 206 ~--~~~g~fv~~~-G~~~r~~~i~W~~~p~~~~~~~p-yli~~~~-~~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 206 Y--DNIGVFVNKN-GEPSRKSTIQWSSAPQSVAYSSP-YLIAFSS-NSIEVRSLETGELVQ 261 (275)
T ss_pred e--cceEEEEcCC-CCcCcccEEEcCCchhEEEEECC-EEEEECC-CEEEEEECcCCcEEE
Confidence 3 3333334443 33332 2221345566666433 5666655 459999999887643
No 338
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.012 Score=55.63 Aligned_cols=211 Identities=10% Similarity=0.069 Sum_probs=129.1
Q ss_pred cccCCCCceeeccCcccc------cceeEEEEEeeccc-eeeeeeeecceeeccceeeCC-ccceEEEEEeccCCCCccC
Q 041206 13 HKHSEGGETMMSDDDDLM------KGRAEEREEMFGFG-LAAMAIRVCNNWISDSCVYGD-KCRFLHSWVHSVDGDNTTN 84 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d~~------~~~~~~~~~~h~~~-v~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~ 84 (371)
.-+++.+..++.|..+.. +.+.++.++.+..+ |..+-.....+++....-... .-..+++|+++..-....
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s- 107 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS- 107 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC-
Confidence 347899999999988833 34555778888887 333332233233332222222 333899999776432221
Q ss_pred Cceee--EeeeC-----ccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCc
Q 041206 85 SLATL--MKLNG-----HKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNA 157 (371)
Q Consensus 85 ~~~~~--~~l~~-----h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (371)
+.++ +.+.+ ...++.+++.+.+-+.+|.|=.+|.|..+.-+ ..+.... .
T Consensus 108 -P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD---i~RDrgs--------------------r 163 (933)
T KOG2114|consen 108 -PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD---ILRDRGS--------------------R 163 (933)
T ss_pred -cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc---chhcccc--------------------c
Confidence 3333 22223 35678999999998899999999999888532 1111000 0
Q ss_pred EEEEEeCCCCeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeee
Q 041206 158 VKSWRVNAASVNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFE 232 (371)
Q Consensus 158 i~~~~~~~~~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~ 232 (371)
+..-+....+|+.+++..+ .+++++ ...|.+|.+.... .....+..+. ..+|-.+++... ++++
T Consensus 164 ~~~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~---p~~~~ld~~G~~lnCss~~~~t~qfIca------- 232 (933)
T KOG2114|consen 164 QDYSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGRT---PSLKVLDNNGISLNCSSFSDGTYQFICA------- 232 (933)
T ss_pred eeeeccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCCC---cceeeeccCCccceeeecCCCCccEEEe-------
Confidence 1111112346888888766 334433 4578899988541 2344577777 999999988654 6554
Q ss_pred eCCCeEEEEECCCceEEEEee-cCCCcEE
Q 041206 233 FCGHTTRTWNLDNLECVQTLK-GHSDTVT 260 (371)
Q Consensus 233 ~~dg~i~iwd~~~~~~~~~~~-~~~~~v~ 260 (371)
.+..+.+||....++-..|. +|.....
T Consensus 233 -~~e~l~fY~sd~~~~cfaf~~g~kk~~~ 260 (933)
T KOG2114|consen 233 -GSEFLYFYDSDGRGPCFAFEVGEKKEML 260 (933)
T ss_pred -cCceEEEEcCCCcceeeeecCCCeEEEE
Confidence 45678999998777777777 6655433
No 339
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.69 E-value=0.013 Score=54.47 Aligned_cols=237 Identities=10% Similarity=0.010 Sum_probs=126.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeC-CEEEEEeCCCe
Q 041206 108 SNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNN-DLLFAGSEGGV 186 (371)
Q Consensus 108 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~-~~l~~~~~dg~ 186 (371)
+..++.++.++.|.-.|..+|+.+..+.......... ..+ ....+.... +.++.++.++.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~---~~~----------------~~~g~~~~~~~~V~v~~~~g~ 121 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGC---CDV----------------VNRGVAYWDPRKVFFGTFDGR 121 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccc---ccc----------------ccCCcEEccCCeEEEecCCCe
Confidence 4567778888999999999999887776432200000 000 001123333 67888888999
Q ss_pred EEEEeccCCCCcceeeEEEecCcce---EEEEecC---CceeEeccc--ceeeeeCCCeEEEEECCCceEEEEeecCCC-
Q 041206 187 ISVWKGTFVANPFKQVASIRAPLWF---CSLSSSN---DTRWNSKEE--AAVFEFCGHTTRTWNLDNLECVQTLKGHSD- 257 (371)
Q Consensus 187 v~iwd~~~~~~~~~~~~~~~~~~~v---~~~~~~~---~~~l~~~~~--~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~- 257 (371)
|.-+|.+++ +.+-.+.....+ ..+.-+| ++.++.+.. .......++.+..+|..+++.+..++....
T Consensus 122 v~AlD~~TG----~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~ 197 (488)
T cd00216 122 LVALDAETG----KQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPD 197 (488)
T ss_pred EEEEECCCC----CEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCC
Confidence 999999988 444443332210 0111111 244444400 000002368899999999998877653211
Q ss_pred -------------------cE-EEEEEc--CCeEEEEeCCC------------------cEEEEEccCCCCccee-----
Q 041206 258 -------------------TV-TSLLFW--DEYLFSSSLDE------------------TIKIWLYTHTKNNAEL----- 292 (371)
Q Consensus 258 -------------------~v-~~~~~~--~~~l~s~~~dg------------------~i~iwd~~~~~~~~~~----- 292 (371)
.+ ...++. +..++.++.++ .+.-+|..+.+..=..
T Consensus 198 ~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~ 277 (488)
T cd00216 198 PNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPH 277 (488)
T ss_pred cCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCC
Confidence 01 012332 45666666554 5766666555431110
Q ss_pred -----c-----ceEEEEecCC--CCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCCeEEe-----------
Q 041206 293 -----S-----SLFGMLDAEA--KPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAGLFFP----------- 349 (371)
Q Consensus 293 -----~-----~~~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~l~~----------- 349 (371)
. .+......++ ...+++++.+|.+..+|.++++.+.+.... ...++.+|+-.++.
T Consensus 278 ~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~~~vyv~~~~~~~~~~~~ 355 (488)
T cd00216 278 DLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--EQPMAYDPGLVYLGAFHIPLGLPPQ 355 (488)
T ss_pred CCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--ccccccCCceEEEccccccccCccc
Confidence 0 0000000111 126788889999999999999988875421 11233444211111
Q ss_pred ------eCCCCcEEEEEccccceecc
Q 041206 350 ------GDASGSVGVWKWLLAEQQKM 369 (371)
Q Consensus 350 ------~~~dg~i~iw~~~~~~~~~~ 369 (371)
...+|.+.-.|..+++.++.
T Consensus 356 ~~~~~~~~~~G~l~AlD~~tG~~~W~ 381 (488)
T cd00216 356 KKKRCKKPGKGGLAALDPKTGKVVWE 381 (488)
T ss_pred ccCCCCCCCceEEEEEeCCCCcEeeE
Confidence 12356677777777665543
No 340
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.68 E-value=4.8e-05 Score=71.10 Aligned_cols=154 Identities=13% Similarity=0.160 Sum_probs=106.1
Q ss_pred eeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeC-
Q 041206 200 KQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSL- 274 (371)
Q Consensus 200 ~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~- 274 (371)
+....++.+. ..+|++|+.+.. |+.| +..|.|+++++.+|........|..+|+-+.-+ +..+++.+.
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG-------~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~ 1164 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVG-------SHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSS 1164 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEee-------eccceEEEEEccCccccccccccccccccccccCCcceeeeeccc
Confidence 5566777788 899999999765 8999 999999999999999999999999999999887 555555443
Q ss_pred CC-cEEEEEccCCCC-cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecC-----CceEEEEEeCCCC-e
Q 041206 275 DE-TIKIWLYTHTKN-NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFS-----RREVEVDQIGPAG-L 346 (371)
Q Consensus 275 dg-~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~v~~~~~s~~~-~ 346 (371)
.. -..+|++..... ......-..+-+++....-+.|.......+||+.++.++.++.. ...-+...|+|+. +
T Consensus 1165 S~PlsaLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1165 SSPLSALWDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred cCchHHHhccccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 22 567999765332 22222222223333332334455556789999999988877552 2233778899988 4
Q ss_pred EEeeCCCCcEEEEEccccc
Q 041206 347 FFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 347 l~~~~~dg~i~iw~~~~~~ 365 (371)
++ .||. +||+...+
T Consensus 1245 Il---ndGv--LWDvR~~~ 1258 (1516)
T KOG1832|consen 1245 IL---NDGV--LWDVRIPE 1258 (1516)
T ss_pred Ee---eCce--eeeeccHH
Confidence 43 3454 68876553
No 341
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.62 E-value=0.06 Score=50.39 Aligned_cols=180 Identities=11% Similarity=0.046 Sum_probs=99.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeCCCe--eE----E-------EeecCCEEEEecCCcEEEEEeCCCCee-----
Q 041206 108 SNKLYSGSRDGRVSVWDRDSGRCVNVITNGAE--IG----C-------LISEGSWVFLGLPNAVKSWRVNAASVN----- 169 (371)
Q Consensus 108 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--~~----~-------~~~~~~~~~~~~~~~i~~~~~~~~~v~----- 169 (371)
+..|+.++.++.|.-.|..+|+.+.++....+ .. + ...++..++...++.+..+|..++++.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 45777778888999999999999888765321 11 1 112344455566888888888777331
Q ss_pred -------EEE----EeCCEEEEEeC------CCeEEEEeccCCCCcceeeEEEec-------------------------
Q 041206 170 -------ALV----VNNDLLFAGSE------GGVISVWKGTFVANPFKQVASIRA------------------------- 207 (371)
Q Consensus 170 -------~~~----~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~------------------------- 207 (371)
.+. +..+.++++.. +|.|.-+|.++++..++.-..-..
T Consensus 149 ~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~ 228 (527)
T TIGR03075 149 GDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAW 228 (527)
T ss_pred ccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCcc
Confidence 111 12235566543 688999999988432211100000
Q ss_pred -C-c-ce-EEEEecCCc-eeEec-ccceeeee----C----CCeEEEEECCCceEEEEeecCCCcEE-----------EE
Q 041206 208 -P-L-WF-CSLSSSNDT-RWNSK-EEAAVFEF----C----GHTTRTWNLDNLECVQTLKGHSDTVT-----------SL 262 (371)
Q Consensus 208 -~-~-~v-~~~~~~~~~-~l~~~-~~~~~~~~----~----dg~i~iwd~~~~~~~~~~~~~~~~v~-----------~~ 262 (371)
+ . .+ ..+++.++. .++.+ ++..-+.. . ..+|.-.|+++|+..-.++.....+. .+
T Consensus 229 ~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~ 308 (527)
T TIGR03075 229 KTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDL 308 (527)
T ss_pred ccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEe
Confidence 0 0 11 133555533 33333 00000101 1 12677889999998866664222111 22
Q ss_pred EEcCC---eEEEEeCCCcEEEEEccCCC
Q 041206 263 LFWDE---YLFSSSLDETIKIWLYTHTK 287 (371)
Q Consensus 263 ~~~~~---~l~s~~~dg~i~iwd~~~~~ 287 (371)
...++ .++.+..+|.+.+.|-++.+
T Consensus 309 ~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 309 KKDGKPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred ccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence 22333 77789999999999965544
No 342
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.61 E-value=0.029 Score=46.50 Aligned_cols=180 Identities=13% Similarity=0.101 Sum_probs=104.8
Q ss_pred CeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc--ceEEEEecCCceeEecccceeeee-CCCeEEE
Q 041206 167 SVNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL--WFCSLSSSNDTRWNSKEEAAVFEF-CGHTTRT 240 (371)
Q Consensus 167 ~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~l~~~~~~~~~~~-~dg~i~i 240 (371)
.+..++|+|+ ++++....+.|..++.. + +.+..+.-.. ....+++..++.++.. . .++.+.+
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G----~vlr~i~l~g~~D~EgI~y~g~~~~vl~-------~Er~~~L~~ 90 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLD-G----KVLRRIPLDGFGDYEGITYLGNGRYVLS-------EERDQRLYI 90 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEETT-------EEEEEE-SS-SSEEEEEE-STTEEEEE-------ETTTTEEEE
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcCC-C----CEEEEEeCCCCCCceeEEEECCCEEEEE-------EcCCCcEEE
Confidence 5899999986 67777778888888875 4 5566655444 7888999888886555 4 4889999
Q ss_pred EECCCce------EEEEee-----cCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccC--CCC-------------ccee
Q 041206 241 WNLDNLE------CVQTLK-----GHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTH--TKN-------------NAEL 292 (371)
Q Consensus 241 wd~~~~~------~~~~~~-----~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~--~~~-------------~~~~ 292 (371)
+++.... ....+. .++..+-.++|+ .+.|+.+-...-..+|.+.. ... ....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccccee
Confidence 9884311 112222 244568899998 46666677776677777654 111 0111
Q ss_pred cceEEE-EecCCCCEEEEecCCCeEEEEEcCCcceeeeecCC----------ceEEEEEeCCCCeEEeeCCCCcEEEE
Q 041206 293 SSLFGM-LDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSR----------REVEVDQIGPAGLFFPGDASGSVGVW 359 (371)
Q Consensus 293 ~~~~~~-~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----------~~v~~~~~s~~~~l~~~~~dg~i~iw 359 (371)
..+..+ +.+..+.+++-......|..+| .+++.+..+.-. .....|+|.++|.|...+.-+..++|
T Consensus 171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp S---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred ccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 122222 4566666888888889999999 556655544321 25789999999955555555555554
No 343
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.59 E-value=0.0078 Score=57.78 Aligned_cols=140 Identities=13% Similarity=0.155 Sum_probs=93.8
Q ss_pred CCCEEEEE-eCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEe-------CCEE
Q 041206 107 GSNKLYSG-SRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVN-------NDLL 178 (371)
Q Consensus 107 ~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~-------~~~l 178 (371)
+.++|+.- .....|+-.|++.|+.+.....+..+ +|..++.. +...
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~--------------------------~v~~~~p~~K~aqlt~e~t 545 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI--------------------------PVVDIAPDSKFAQLTNEQT 545 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCc--------------------------ceeEecccccccccCCCce
Confidence 33444443 34567888899998888776654321 13444332 3366
Q ss_pred EEEeCCCeEEEEeccCCCCcceeeE----EEecCcceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEeec
Q 041206 179 FAGSEGGVISVWKGTFVANPFKQVA----SIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKG 254 (371)
Q Consensus 179 ~~~~~dg~v~iwd~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 254 (371)
+.|-.++.+..||.+-... +.+. .+.......|++-..+|.++.| +.+|.|++||--..+....|++
T Consensus 546 flGls~n~lfriDpR~~~~--k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavg-------s~~G~IRLyd~~g~~AKT~lp~ 616 (794)
T PF08553_consen 546 FLGLSDNSLFRIDPRLSGN--KLVDSQSKQYSSKNNFSCFATTEDGYIAVG-------SNKGDIRLYDRLGKRAKTALPG 616 (794)
T ss_pred EEEECCCceEEeccCCCCC--ceeeccccccccCCCceEEEecCCceEEEE-------eCCCcEEeecccchhhhhcCCC
Confidence 7788889999999886532 2221 1212227889999999999999 9999999999544344455667
Q ss_pred CCCcEEEEEEc--CCeEEEEeCCCcEEEEE
Q 041206 255 HSDTVTSLLFW--DEYLFSSSLDETIKIWL 282 (371)
Q Consensus 255 ~~~~v~~~~~~--~~~l~s~~~dg~i~iwd 282 (371)
-..+|..|..+ |+++++.+ +..+.+++
T Consensus 617 lG~pI~~iDvt~DGkwilaTc-~tyLlLi~ 645 (794)
T PF08553_consen 617 LGDPIIGIDVTADGKWILATC-KTYLLLID 645 (794)
T ss_pred CCCCeeEEEecCCCcEEEEee-cceEEEEE
Confidence 78899999988 66666544 45677777
No 344
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.59 E-value=0.028 Score=45.75 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=50.4
Q ss_pred CCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeE---EEee-cCCEEEEecCCcEE
Q 041206 84 NSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIG---CLIS-EGSWVFLGLPNAVK 159 (371)
Q Consensus 84 ~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~i~ 159 (371)
++++..+.+..-..-=......+++..+..|+.|++.+.-|..+..++...+.++.+. ++.+ ++.+.++...+.+.
T Consensus 81 ~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 81 KTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred cchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEE
Confidence 4455555555332222233456789999999999999999999999998877765433 2223 34444444445444
Q ss_pred EEEeC
Q 041206 160 SWRVN 164 (371)
Q Consensus 160 ~~~~~ 164 (371)
-....
T Consensus 161 avt~~ 165 (354)
T KOG4649|consen 161 AVTKN 165 (354)
T ss_pred EEccC
Confidence 43333
No 345
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.56 E-value=0.03 Score=45.55 Aligned_cols=109 Identities=18% Similarity=0.106 Sum_probs=78.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCCEEEEEeCCCeE
Q 041206 108 SNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNNDLLFAGSEGGVI 187 (371)
Q Consensus 108 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~l~~~~~dg~v 187 (371)
..+++.||..+.+.--|..+|+.......+..+.+- + ..-.++++.|+..|.+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~s--------------------------a-~vvgdfVV~GCy~g~l 75 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECS--------------------------A-IVVGDFVVLGCYSGGL 75 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeee--------------------------e-EEECCEEEEEEccCcE
Confidence 356778888888888888888877765555443221 1 1245689999999999
Q ss_pred EEEeccCCCCcceeeEEEecCcceE-EEEecCCc-eeEecccceeeeeCCCeEEEEECCCceEEEEeec
Q 041206 188 SVWKGTFVANPFKQVASIRAPLWFC-SLSSSNDT-RWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKG 254 (371)
Q Consensus 188 ~iwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~-~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 254 (371)
++.+.+++ .....+.....|. .....+++ .+.+| +.|+..+..|.++..++...+-
T Consensus 76 Yfl~~~tG----s~~w~f~~~~~vk~~a~~d~~~glIycg-------shd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 76 YFLCVKTG----SQIWNFVILETVKVRAQCDFDGGLIYCG-------SHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred EEEEecch----hheeeeeehhhhccceEEcCCCceEEEe-------cCCCcEEEecccccceEEeccc
Confidence 99999999 5555555544222 22334455 58899 9999999999999988877653
No 346
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.53 E-value=0.06 Score=50.17 Aligned_cols=96 Identities=5% Similarity=-0.026 Sum_probs=61.9
Q ss_pred CCeEEEEeCCCcEEEEEccC-----CCCccee---cceEEE-EecCCCCEEEEecCCCeEEEEEcCCcce----------
Q 041206 266 DEYLFSSSLDETIKIWLYTH-----TKNNAEL---SSLFGM-LDAEAKPVLFSSGKDSAIRLYELPSFKL---------- 326 (371)
Q Consensus 266 ~~~l~s~~~dg~i~iwd~~~-----~~~~~~~---~~~~~~-~~~~~~~~l~~~~~d~~i~iwd~~~~~~---------- 326 (371)
+++... .++.|.+.|.+. ......+ .....+ .+|++..+++++..+++|.|.|+.+.+.
T Consensus 288 GK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~ 365 (635)
T PRK02888 288 GKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRD 365 (635)
T ss_pred CCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccc
Confidence 444443 356799999876 1211111 111122 4555554556666799999999988653
Q ss_pred --eeeecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEccc
Q 041206 327 --RARIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 327 --~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~ 363 (371)
..+..-.......+|.++| ...+---|..|..|++..
T Consensus 366 ~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 366 AVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 3333334445678899998 778888899999999986
No 347
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.53 E-value=0.065 Score=48.45 Aligned_cols=225 Identities=14% Similarity=0.109 Sum_probs=114.7
Q ss_pred eEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCe------eEE
Q 041206 69 FLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAE------IGC 142 (371)
Q Consensus 69 ~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~------~~~ 142 (371)
.|++++ ..++++.++.=-.+.|.++.|+.+. .|+.-..||.++++|+. |+. .+..+.. ..+
T Consensus 62 ~I~iys---------~sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~ 128 (410)
T PF04841_consen 62 SIQIYS---------SSGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLEC 128 (410)
T ss_pred EEEEEC---------CCCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC-Cce--eechhhhccccCcccc
Confidence 577777 4556666655444899999999854 56666789999999986 333 2222111 112
Q ss_pred ----Ee-ecCCEEEEecCCcEEEEEeCCCCe--------eE--------------EEEeCC--EEEEEeCCCeEEEEecc
Q 041206 143 ----LI-SEGSWVFLGLPNAVKSWRVNAASV--------NA--------------LVVNND--LLFAGSEGGVISVWKGT 193 (371)
Q Consensus 143 ----~~-~~~~~~~~~~~~~i~~~~~~~~~v--------~~--------------~~~~~~--~l~~~~~dg~v~iwd~~ 193 (371)
.. .+...++...++.+....-...++ .. ..+..+ ..+....++.+.+.+-.
T Consensus 129 ~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~ 208 (410)
T PF04841_consen 129 RIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDEN 208 (410)
T ss_pred cccccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcc
Confidence 11 223333333333333222211110 00 001111 22222233333322221
Q ss_pred CCCCcceeeEEEecCcceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecC-CCcEEEEEEcCCeEEE
Q 041206 194 FVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGH-SDTVTSLLFWDEYLFS 271 (371)
Q Consensus 194 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~l~s 271 (371)
.. ..+....++..+++||+++ ++.- ..+|.+.+....-.+.+..+... ......+.|.|+--+.
T Consensus 209 ~~-------~~i~~~~~i~~iavSpng~~iAl~-------t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~ 274 (410)
T PF04841_consen 209 SF-------KQIDSDGPIIKIAVSPNGKFIALF-------TDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVV 274 (410)
T ss_pred cc-------ccccCCCCeEEEEECCCCCEEEEE-------ECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEE
Confidence 11 1122223799999999997 5555 67789888876655555555533 3455677777542222
Q ss_pred EeCCCcEEEEEccCCCCcceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec
Q 041206 272 SSLDETIKIWLYTHTKNNAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF 331 (371)
Q Consensus 272 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 331 (371)
......+.+..... ..+. +.-+.. .++..-.|| +||+.-...+.+.++.
T Consensus 275 l~~~~~l~lvg~~~-------~~~~--~~~~~~-~~l~~E~DG-~riit~~~~~~l~~Vp 323 (410)
T PF04841_consen 275 LSWEDELLLVGPDG-------DSIS--FWYDGP-VILVSEIDG-VRIITSTSHEFLQRVP 323 (410)
T ss_pred EEeCCEEEEECCCC-------CceE--EeccCc-eEEeccCCc-eEEEeCCceEEEEECC
Confidence 22234455443111 0111 222222 455556666 8888777666666554
No 348
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.52 E-value=0.1 Score=50.50 Aligned_cols=126 Identities=11% Similarity=0.084 Sum_probs=80.3
Q ss_pred eCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC-------cceecceEEEEecCC
Q 041206 233 FCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN-------NAELSSLFGMLDAEA 303 (371)
Q Consensus 233 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~ 303 (371)
+-...|++|+..+.+.++.-..|..++..+... ++.++.|..-+.+.+-.++..+. .-....+..+..-++
T Consensus 845 ~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~ 924 (1096)
T KOG1897|consen 845 GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDD 924 (1096)
T ss_pred ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecC
Confidence 567899999999887777767788888877776 89999999888888877665552 111123333444444
Q ss_pred CCEEEEecCCCeEEEEEcCC-------------------cceeeeecCCceEEEE--EeCCCC-eEEeeCCCCcEEEE
Q 041206 304 KPVLFSSGKDSAIRLYELPS-------------------FKLRARIFSRREVEVD--QIGPAG-LFFPGDASGSVGVW 359 (371)
Q Consensus 304 ~~~l~~~~~d~~i~iwd~~~-------------------~~~~~~~~~~~~v~~~--~~s~~~-~l~~~~~dg~i~iw 359 (371)
. .++.+..+|.+.+...++ ++.+..+.|..-|.++ ..+|-+ .+..|..+|.|-+-
T Consensus 925 d-~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen 925 D-TYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLVMQLGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred c-eEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceEeeccccccCCCCcEEEEEccceEEEE
Confidence 4 455666777777765543 2223333333344441 234445 78888888888653
No 349
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.47 E-value=5.3e-05 Score=68.27 Aligned_cols=159 Identities=14% Similarity=0.192 Sum_probs=101.5
Q ss_pred eeeCccCCeEEEEEcC-CCCEEEEEe----CCCcEEEEECCCCce--EEEEeCCCeeEEEeecCCEEEEecCCcEEEEEe
Q 041206 91 KLNGHKKAVTNVGLPS-GSNKLYSGS----RDGRVSVWDRDSGRC--VNVITNGAEIGCLISEGSWVFLGLPNAVKSWRV 163 (371)
Q Consensus 91 ~l~~h~~~V~~~~~~~-~~~~l~s~~----~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 163 (371)
...+|..+.++++|++ |.+.||.|- .|..+.|||+.++-. .........
T Consensus 97 ~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~------------------------ 152 (783)
T KOG1008|consen 97 VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSS------------------------ 152 (783)
T ss_pred ecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccc------------------------
Confidence 4567889999999998 778888873 467899999987732 111111000
Q ss_pred CCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecC-CceeEecccceeeeeCCCeEE
Q 041206 164 NAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSN-DTRWNSKEEAAVFEFCGHTTR 239 (371)
Q Consensus 164 ~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~-~~~l~~~~~~~~~~~~dg~i~ 239 (371)
......+++|..+ ++.+|.....+.++|++.. ......... .+..+.+.| ....++. ..||.|.
T Consensus 153 ~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs-----~~~~~svnTk~vqG~tVdp~~~nY~cs-------~~dg~iA 220 (783)
T KOG1008|consen 153 TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS-----LDSVSSVNTKYVQGITVDPFSPNYFCS-------NSDGDIA 220 (783)
T ss_pred cccCccccccccCcchhhcccccchhhhhhhhhh-----hhhhhhhhhhhcccceecCCCCCceec-------cccCcee
Confidence 0112446777655 7888888889999999854 122222222 566777777 3446666 7799999
Q ss_pred EEE-CCCce-EEEEeecC----CCcEEEEEEc---CCeEEEEeC-CCcEEEEEccC
Q 041206 240 TWN-LDNLE-CVQTLKGH----SDTVTSLLFW---DEYLFSSSL-DETIKIWLYTH 285 (371)
Q Consensus 240 iwd-~~~~~-~~~~~~~~----~~~v~~~~~~---~~~l~s~~~-dg~i~iwd~~~ 285 (371)
+|| .+.-+ ++..+... ...+..++|. ...+++... .++|+++|+..
T Consensus 221 iwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 221 IWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred eccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 999 44322 22222212 2248889998 346666665 46899999654
No 350
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.38 E-value=0.064 Score=44.86 Aligned_cols=157 Identities=15% Similarity=0.160 Sum_probs=97.9
Q ss_pred eEEEEEc-CCCCEEEEEeCCCcEEEEECCCCceEEEEeC--C----CeeEEEe--ecCCEEEEecC---------CcEEE
Q 041206 99 VTNVGLP-SGSNKLYSGSRDGRVSVWDRDSGRCVNVITN--G----AEIGCLI--SEGSWVFLGLP---------NAVKS 160 (371)
Q Consensus 99 V~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~----~~~~~~~--~~~~~~~~~~~---------~~i~~ 160 (371)
...+++. +++ .|+.+...+ +.++|..+++....... . .....+. +++++.++... +.+..
T Consensus 42 ~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 7778888 564 555555544 56669998865544443 1 1233333 35665555321 23444
Q ss_pred EEeCC---------CCeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEE---ecCc-ceEEEEecCCcee-E
Q 041206 161 WRVNA---------ASVNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASI---RAPL-WFCSLSSSNDTRW-N 223 (371)
Q Consensus 161 ~~~~~---------~~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~---~~~~-~v~~~~~~~~~~l-~ 223 (371)
++... ...+.|+|+|+ ++++-+..+.|..+++............+ .... ..-.+++..+|+| +
T Consensus 120 ~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~v 199 (246)
T PF08450_consen 120 IDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWV 199 (246)
T ss_dssp EETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEE
T ss_pred ECCCCeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEE
Confidence 44441 15678999988 44566778899999987543311222222 2222 4788999999985 4
Q ss_pred ecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc
Q 041206 224 SKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW 265 (371)
Q Consensus 224 ~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 265 (371)
+. ...+.|.++|.+ ++.+..+......+++++|.
T Consensus 200 a~-------~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 200 AD-------WGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp EE-------ETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred EE-------cCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 54 578999999998 88888887666689999995
No 351
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.29 E-value=0.001 Score=36.60 Aligned_cols=37 Identities=51% Similarity=0.688 Sum_probs=30.7
Q ss_pred ceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEE
Q 041206 246 LECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWL 282 (371)
Q Consensus 246 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd 282 (371)
++++..+..|...|.++.|. ++++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 35667777888899999998 56889999999999985
No 352
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.28 E-value=0.002 Score=59.13 Aligned_cols=105 Identities=12% Similarity=0.078 Sum_probs=73.8
Q ss_pred EEEEEEcCCeEEEEeCCCcEEEEEccCCCC-----cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeee---
Q 041206 259 VTSLLFWDEYLFSSSLDETIKIWLYTHTKN-----NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARI--- 330 (371)
Q Consensus 259 v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--- 330 (371)
.++++-.+++++.|+.-|.+++|+-..+.. ...-..++....++...++++|+..|.|.++-+....+....
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence 345554589999999999999999433332 111112233334445558888999999999988764322111
Q ss_pred --c--CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccc
Q 041206 331 --F--SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 331 --~--~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~ 363 (371)
. |...|+++.|++|+ .+++|...|+|..-.+..
T Consensus 118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1 36789999999999 999999999998888776
No 353
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.27 E-value=0.14 Score=50.73 Aligned_cols=179 Identities=9% Similarity=0.032 Sum_probs=94.4
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC-------CCeeEEEeecCCEEEEecCCcEEEE-------
Q 041206 96 KKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN-------GAEIGCLISEGSWVFLGLPNAVKSW------- 161 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~------- 161 (371)
.+.|.+++|+||++.++-.+..+++.+-.- +..++...+. +..+.-=......-+-|+.+.....
T Consensus 109 d~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek 187 (1265)
T KOG1920|consen 109 DNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEK 187 (1265)
T ss_pred cCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhccccccccccccccceecccccceeeecchhhhcccccccccc
Confidence 568999999999999999888887766542 2222211111 1111100000111111111110000
Q ss_pred -----EeCCCCeeEEEEeCC--EEEEE-----eCCCeEEEEeccCCCCcceeeEEEecC-c-ceEEEEecCCcee-Eecc
Q 041206 162 -----RVNAASVNALVVNND--LLFAG-----SEGGVISVWKGTFVANPFKQVASIRAP-L-WFCSLSSSNDTRW-NSKE 226 (371)
Q Consensus 162 -----~~~~~~v~~~~~~~~--~l~~~-----~~dg~v~iwd~~~~~~~~~~~~~~~~~-~-~v~~~~~~~~~~l-~~~~ 226 (371)
+.+. .=.+++|..+ ++++. .....|++||-+ + . +...... . .-.+++|-|.|.+ ++-.
T Consensus 188 ~~~~~~~~~-~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g----~-Lns~se~~~~l~~~LsWkPsgs~iA~iq 260 (1265)
T KOG1920|consen 188 ALEQIEQDD-HKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G----A-LNSTSEPVEGLQHSLSWKPSGSLIAAIQ 260 (1265)
T ss_pred cccchhhcc-CCceEEEccCCcEEEEEEEeccCCceeEEEeccc-c----h-hhcccCcccccccceeecCCCCeEeeee
Confidence 1111 1245778766 55552 223789999987 3 1 2222222 2 4568999998864 3321
Q ss_pred cceeeeeCCCeEEEEECCC---ceEEEEeecCCCcEEEEEEc--CCeEEE---EeCCCcEEEEEccCC
Q 041206 227 EAAVFEFCGHTTRTWNLDN---LECVQTLKGHSDTVTSLLFW--DEYLFS---SSLDETIKIWLYTHT 286 (371)
Q Consensus 227 ~~~~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~--~~~l~s---~~~dg~i~iwd~~~~ 286 (371)
.. ++|+.|.+|.-+. ++..-.+.....++..++|+ +..|+. ......|++|-+.+.
T Consensus 261 ~~----~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 261 CK----TSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ec----CCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 11 5566788887553 22222233334458999999 566665 445555999985543
No 354
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0019 Score=58.54 Aligned_cols=87 Identities=14% Similarity=0.142 Sum_probs=71.6
Q ss_pred CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceE-EEEecCCce-eEecccceeeeeCCCeEEEE
Q 041206 167 SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFC-SLSSSNDTR-WNSKEEAAVFEFCGHTTRTW 241 (371)
Q Consensus 167 ~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~-~~~~~~~~~-l~~~~~~~~~~~~dg~i~iw 241 (371)
.+.-+.|+|. .+|.+..+|.|.+..++ - +.+.++..+. .++ +++|.|||+ ++.| -.||+|++-
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~----qRlwtip~p~~~v~~sL~W~~DGkllaVg-------~kdG~I~L~ 89 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-W----QRLWTIPIPGENVTASLCWRPDGKLLAVG-------FKDGTIRLH 89 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-c----ceeEeccCCCCccceeeeecCCCCEEEEE-------ecCCeEEEE
Confidence 4777899998 99999999999999888 3 6788888777 666 999999998 7888 999999999
Q ss_pred ECCCceEEEEee-cCCCcEEEEEEc
Q 041206 242 NLDNLECVQTLK-GHSDTVTSLLFW 265 (371)
Q Consensus 242 d~~~~~~~~~~~-~~~~~v~~~~~~ 265 (371)
|+.++..+..+. .-...|.++.|.
T Consensus 90 Dve~~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 90 DVEKGGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred EccCCCceeccccccccchheeecc
Confidence 999988776632 234567777775
No 355
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.15 E-value=0.0013 Score=52.13 Aligned_cols=130 Identities=9% Similarity=0.047 Sum_probs=78.9
Q ss_pred eCCCeEEEEECCCceEEE-EeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCC------cceecceEEEEecCCCC
Q 041206 233 FCGHTTRTWNLDNLECVQ-TLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKN------NAELSSLFGMLDAEAKP 305 (371)
Q Consensus 233 ~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~ 305 (371)
+.+|.|+-++++..+.-. .-..|... ..+.-.+..++.|+.+|.|.+|....... ...-...+.++....+.
T Consensus 37 sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~ 115 (238)
T KOG2444|consen 37 SADGLVRERKVRKHKESCRSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSS 115 (238)
T ss_pred cCCcccccchhhhhhhhhhhhhhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccc
Confidence 788888888877543211 11112211 22222267889999999999998763221 11111223334444445
Q ss_pred EEEEecCCCeEEEEEcCCcceeeeecC-C-ceEEEEEeCCCC-eEEee--CCCCcEEEEEccc
Q 041206 306 VLFSSGKDSAIRLYELPSFKLRARIFS-R-REVEVDQIGPAG-LFFPG--DASGSVGVWKWLL 363 (371)
Q Consensus 306 ~l~~~~~d~~i~iwd~~~~~~~~~~~~-~-~~v~~~~~s~~~-~l~~~--~~dg~i~iw~~~~ 363 (371)
+..+++.+|.||.|+....+.+....+ . .++..+..+..+ .++.. |.|..++.|++..
T Consensus 116 ~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 116 LGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 888999999999999988887766653 3 344444444444 56655 7777777777753
No 356
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.11 E-value=0.066 Score=44.32 Aligned_cols=51 Identities=10% Similarity=0.150 Sum_probs=37.9
Q ss_pred CCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 041206 64 GDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVW 123 (371)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iw 123 (371)
....+.|-+++ ....++.+.++.+|.-.-..+.+.+||+.++.+. |-|...
T Consensus 136 d~~rGViGvYd-------~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIeth 186 (366)
T COG3490 136 DPNRGVIGVYD-------AREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETH 186 (366)
T ss_pred CCCCceEEEEe-------cccccceecccccCCcCcceeEEecCCcEEEEeC--Cceecc
Confidence 34556677777 4466778888999998899999999999988764 335444
No 357
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.08 E-value=0.13 Score=42.65 Aligned_cols=170 Identities=14% Similarity=0.038 Sum_probs=105.2
Q ss_pred eeEEEE-eCC-EEEEEeCCC--eEEEEeccCCCCcceeeEEEecCc--ceEEEEecCCceeEecccceeeeeCCCeEEEE
Q 041206 168 VNALVV-NND-LLFAGSEGG--VISVWKGTFVANPFKQVASIRAPL--WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTW 241 (371)
Q Consensus 168 v~~~~~-~~~-~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iw 241 (371)
...+.+ ..+ ++-+.+.-| .|+.+|+.++ +......-.. --..++...|..+.-. -.++...+|
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg----~~~~~~~l~~~~FgEGit~~~d~l~qLT-------Wk~~~~f~y 115 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETG----KVLQSVPLPPRYFGEGITILGDKLYQLT-------WKEGTGFVY 115 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTS----SEEEEEE-TTT--EEEEEEETTEEEEEE-------SSSSEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCC----cEEEEEECCccccceeEEEECCEEEEEE-------ecCCeEEEE
Confidence 456777 444 445555555 6888999988 5554444433 3445555554433334 688999999
Q ss_pred ECCCceEEEEeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCC---------cceecceEEEEecCCCCEEEEecC
Q 041206 242 NLDNLECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKN---------NAELSSLFGMLDAEAKPVLFSSGK 312 (371)
Q Consensus 242 d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~ 312 (371)
|..+.+.+.++.- .+.=..++..++.|+.+.....++++|....+. ..++..+.-+-+.++. +.|=.=.
T Consensus 116 d~~tl~~~~~~~y-~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~-IyANVW~ 193 (264)
T PF05096_consen 116 DPNTLKKIGTFPY-PGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGK-IYANVWQ 193 (264)
T ss_dssp ETTTTEEEEEEE--SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTE-EEEEETT
T ss_pred ccccceEEEEEec-CCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCE-EEEEeCC
Confidence 9999999988873 456688888888888777778899999655442 2223334444444433 4444445
Q ss_pred CCeEEEEEcCCcceeeeecC----------------CceEEEEEeCCCC--eEEee
Q 041206 313 DSAIRLYELPSFKLRARIFS----------------RREVEVDQIGPAG--LFFPG 350 (371)
Q Consensus 313 d~~i~iwd~~~~~~~~~~~~----------------~~~v~~~~~s~~~--~l~~~ 350 (371)
...|...|+.+++....+.- ..-.+.+|+.|.. +++||
T Consensus 194 td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 194 TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 56788889999887765521 2468999999877 77777
No 358
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.07 E-value=0.0026 Score=37.32 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=30.0
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 041206 96 KKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRC 130 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 130 (371)
...|.+++|+|...+||.+..+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 356999999999999999999999999998 5554
No 359
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.07 E-value=0.27 Score=46.04 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=68.2
Q ss_pred cCCCCEEEEEeCCCcEEEEECCC-----CceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC---
Q 041206 105 PSGSNKLYSGSRDGRVSVWDRDS-----GRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--- 176 (371)
Q Consensus 105 ~~~~~~l~s~~~dg~v~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--- 176 (371)
.++|++...+ ++.|.+.|..+ .+.+..++.+. ....+.++|+
T Consensus 285 vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGK----------------------------sPHGV~vSPDGky 334 (635)
T PRK02888 285 VKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPK----------------------------NPHGVNTSPDGKY 334 (635)
T ss_pred hhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCC----------------------------CccceEECCCCCE
Confidence 3467766653 56799999887 35555555443 3677888888
Q ss_pred EEEEEeCCCeEEEEeccCCCCcc--------eeeEEEecCcceEEEEecCCce-eEecccceeeeeCCCeEEEEECCC
Q 041206 177 LLFAGSEGGVISVWKGTFVANPF--------KQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDN 245 (371)
Q Consensus 177 ~l~~~~~dg~v~iwd~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~ 245 (371)
.++++..+.+|.|+|+.+....+ ......+....-...+|.++|. +.+- .-|..|..|++.+
T Consensus 335 lyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytsl-------f~dsqv~kwn~~~ 405 (635)
T PRK02888 335 FIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTL-------FLDSQIVKWNIEA 405 (635)
T ss_pred EEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeE-------eecceeEEEehHH
Confidence 45555568899999988753210 1122222222556788888887 5555 7789999999976
No 360
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.012 Score=52.52 Aligned_cols=127 Identities=13% Similarity=0.116 Sum_probs=89.9
Q ss_pred CCCEEE-EEeCCCcEEEEECCCCceEEEEeCCCeeEEEe--e--------cCCEEEEecCCcEEEEEeCCC---------
Q 041206 107 GSNKLY-SGSRDGRVSVWDRDSGRCVNVITNGAEIGCLI--S--------EGSWVFLGLPNAVKSWRVNAA--------- 166 (371)
Q Consensus 107 ~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~~i~~~~~~~~--------- 166 (371)
+.++|+ ++.....++--|++.|+.+.....+..+.... + ....++.-+++.|.-||++-.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 444444 45555668888999999998888766544332 2 233455556788888888644
Q ss_pred --------CeeEEEEeCC-EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCC
Q 041206 167 --------SVNALVVNND-LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGH 236 (371)
Q Consensus 167 --------~v~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg 236 (371)
...|++-..+ ++++|+.+|.|++||--.. .....+++.. +|..+..+.+|+++.| +.+.
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~----~AKTAlPgLG~~I~hVdvtadGKwil~-------Tc~t 492 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGR----RAKTALPGLGDAIKHVDVTADGKWILA-------TCKT 492 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehhhhh----hhhhcccccCCceeeEEeeccCcEEEE-------eccc
Confidence 3345555555 9999999999999997333 4445677777 9999999999996666 6788
Q ss_pred eEEEEECC
Q 041206 237 TTRTWNLD 244 (371)
Q Consensus 237 ~i~iwd~~ 244 (371)
.+.+.++.
T Consensus 493 yLlLi~t~ 500 (644)
T KOG2395|consen 493 YLLLIDTL 500 (644)
T ss_pred EEEEEEEe
Confidence 88777764
No 361
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.01 E-value=0.39 Score=46.95 Aligned_cols=251 Identities=9% Similarity=-0.052 Sum_probs=122.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCe-----eEEEEeCCEEEEE
Q 041206 107 GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASV-----NALVVNNDLLFAG 181 (371)
Q Consensus 107 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v-----~~~~~~~~~l~~~ 181 (371)
-+..|+.++.++.|.-.|..+|+.+.++........... ...-+.+..|+...... ..-......++.+
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~------~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~ 266 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQ------HQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILP 266 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccc------cccccceEEecCCcccccccccccccccCCEEEEe
Confidence 356888888899999999999999998876543221000 00012233343221111 0111233488889
Q ss_pred eCCCeEEEEeccCCCCcceeeEEEecCcce-------------EEEEecC---CceeEeccc---ceeeeeCCCeEEEEE
Q 041206 182 SEGGVISVWKGTFVANPFKQVASIRAPLWF-------------CSLSSSN---DTRWNSKEE---AAVFEFCGHTTRTWN 242 (371)
Q Consensus 182 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v-------------~~~~~~~---~~~l~~~~~---~~~~~~~dg~i~iwd 242 (371)
+.|+.+.-.|.+++ +.+-.+.....+ ..+.-.| ++.++.|.. .......+|.|+-+|
T Consensus 267 T~Dg~LiALDA~TG----k~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~D 342 (764)
T TIGR03074 267 TSDARLIALDADTG----KLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFD 342 (764)
T ss_pred cCCCeEEEEECCCC----CEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEE
Confidence 99999999999998 555444321111 0111112 234444300 000001268999999
Q ss_pred CCCceEEEEeecCCCcEEEEEEcCCeEEEEeCCC-cEEEEEccCCCCcceecceEEEEecCCCCEEEEecCCCeEEEEEc
Q 041206 243 LDNLECVQTLKGHSDTVTSLLFWDEYLFSSSLDE-TIKIWLYTHTKNNAELSSLFGMLDAEAKPVLFSSGKDSAIRLYEL 321 (371)
Q Consensus 243 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 321 (371)
.++|+.+-.+..-..........++....++.+. ...-+|.+...-.-....-..-++.. .+.....-..+.|.-.|.
T Consensus 343 a~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~-~r~~~~n~y~~slvALD~ 421 (764)
T TIGR03074 343 VNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGG-DRTPADEKYSSSLVALDA 421 (764)
T ss_pred CCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCC-ccccCcccccceEEEEeC
Confidence 9999998777531111111101111111111110 11122211111000000000000000 000001122456777888
Q ss_pred CCcceeeeecC-Cc---------eEEEEEeCC-CC----eEEeeCCCCcEEEEEccccceec
Q 041206 322 PSFKLRARIFS-RR---------EVEVDQIGP-AG----LFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 322 ~~~~~~~~~~~-~~---------~v~~~~~s~-~~----~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
++++.+..+.. .. ...-+.+.. +| .++.++.+|.+.++|-.+++.+.
T Consensus 422 ~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 422 TTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred CCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence 88888877753 11 111222322 44 78999999999999999887665
No 362
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.0032 Score=60.68 Aligned_cols=108 Identities=14% Similarity=0.186 Sum_probs=79.6
Q ss_pred eeEEEEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCC
Q 041206 168 VNALVVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDN 245 (371)
Q Consensus 168 v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~ 245 (371)
+.+.+.-...++.|+..|.+-..|+...- .+...-..-. +|++++|+.+|+ ++.| -.+|.|.+||+..
T Consensus 92 v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL---~~~~~ne~v~~~Vtsvafn~dg~~l~~G-------~~~G~V~v~D~~~ 161 (1206)
T KOG2079|consen 92 VISSAIVVVPIVIGTSHGHVLLSDMTGNL---GPLHQNERVQGPVTSVAFNQDGSLLLAG-------LGDGHVTVWDMHR 161 (1206)
T ss_pred eeeeeeeeeeEEEEcCchhhhhhhhhccc---chhhcCCccCCcceeeEecCCCceeccc-------cCCCcEEEEEccC
Confidence 44555555589999999999999988751 2211111222 999999999997 7788 8999999999999
Q ss_pred ceEEEEeecCCCcEEEEEEc-----CCeEEEEeCCCcEEEEEccCCC
Q 041206 246 LECVQTLKGHSDTVTSLLFW-----DEYLFSSSLDETIKIWLYTHTK 287 (371)
Q Consensus 246 ~~~~~~~~~~~~~v~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~ 287 (371)
++.++.+..|..+.+++-+. +..++++...|. +|.+...+
T Consensus 162 ~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv~nk 206 (1206)
T KOG2079|consen 162 AKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLVFNK 206 (1206)
T ss_pred CcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEEech
Confidence 99999998888777776664 345777777776 77754433
No 363
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.96 E-value=0.0032 Score=36.91 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=28.4
Q ss_pred CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcc
Q 041206 332 SRREVEVDQIGPAG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 332 ~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~ 362 (371)
....|..++|+|.. +||.++.+|.|.+|+++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 46679999999999 99999999999999994
No 364
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.76 E-value=0.41 Score=43.36 Aligned_cols=171 Identities=10% Similarity=-0.086 Sum_probs=84.3
Q ss_pred CCeeEEEEeCC-EEEEEeCCCeEEEEeccCCCCcceeeEEEe---cCc-ceEEEEecCCceeEecccceeeeeCCCeEEE
Q 041206 166 ASVNALVVNND-LLFAGSEGGVISVWKGTFVANPFKQVASIR---APL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRT 240 (371)
Q Consensus 166 ~~v~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~i 240 (371)
+.+.++.|+.+ .|++-..||.+++||+.... .+....... ... .+....+...|.++. ..++.+.+
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--------t~~~~~~~ 151 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--------TGNNRFYV 151 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCCEEEE--------CCCCeEEE
Confidence 67999999887 88888899999999987541 100111111 111 122223333454222 33444444
Q ss_pred EECCCce-EEEEe---ec-----CCC-cEEE-EEEc--CCeEEEEeCCCcEEEEEccCCCCcceecceEEEEecCCCCEE
Q 041206 241 WNLDNLE-CVQTL---KG-----HSD-TVTS-LLFW--DEYLFSSSLDETIKIWLYTHTKNNAELSSLFGMLDAEAKPVL 307 (371)
Q Consensus 241 wd~~~~~-~~~~~---~~-----~~~-~v~~-~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~l 307 (371)
..-.... ..+.+ .. +.. .... ..+. ....+....++.+.+.+-...........+..+..+++++++
T Consensus 152 v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~i~~~~~i~~iavSpng~~i 231 (410)
T PF04841_consen 152 VNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQIDSDGPIIKIAVSPNGKFI 231 (410)
T ss_pred EeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccccccCCCCeEEEEECCCCCEE
Confidence 3222111 11111 10 000 1111 1122 344555556666664443221111111234455556566688
Q ss_pred EEecCCCeEEEEEcCCcceeeeecC--CceEEEEEeCCCC
Q 041206 308 FSSGKDSAIRLYELPSFKLRARIFS--RREVEVDQIGPAG 345 (371)
Q Consensus 308 ~~~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~s~~~ 345 (371)
+.-..+|.+.+....-.+...++.. ......+.|.-+.
T Consensus 232 Al~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 232 ALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred EEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 8888889998887665555555543 2455666666544
No 365
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.011 Score=53.86 Aligned_cols=91 Identities=12% Similarity=0.050 Sum_probs=70.5
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCee-EEEEe
Q 041206 96 KKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVN-ALVVN 174 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~-~~~~~ 174 (371)
...|.-+.|+|.-.++|.+..+|.|.+..+. -+.+.+++.++ .+++ +++|.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~---------------------------~~v~~sL~W~ 71 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPG---------------------------ENVTASLCWR 71 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCC---------------------------Cccceeeeec
Confidence 3468889999999999999999999999887 66666666322 2355 99999
Q ss_pred CC--EEEEEeCCCeEEEEeccCCCCcceeeEEEec-Cc-ceEEEEecC
Q 041206 175 ND--LLFAGSEGGVISVWKGTFVANPFKQVASIRA-PL-WFCSLSSSN 218 (371)
Q Consensus 175 ~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~-~v~~~~~~~ 218 (371)
|+ .+++|-.||+|++-|.+++ ..+..... .. .|.++-|.+
T Consensus 72 ~DGkllaVg~kdG~I~L~Dve~~----~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 72 PDGKLLAVGFKDGTIRLHDVEKG----GRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CCCCEEEEEecCCeEEEEEccCC----Cceeccccccccchheeeccc
Confidence 98 9999999999999999998 44544222 22 777777764
No 366
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.69 E-value=0.13 Score=48.40 Aligned_cols=122 Identities=10% Similarity=0.023 Sum_probs=72.7
Q ss_pred eeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCC
Q 041206 88 TLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAAS 167 (371)
Q Consensus 88 ~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 167 (371)
...++...-....-+.-+.-++..+.-+...++.|||...+.....-... ..+.
T Consensus 21 ~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~--------------------------~~~~ 74 (631)
T PF12234_consen 21 LTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFS--------------------------EDDP 74 (631)
T ss_pred EEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeec--------------------------CCCc
Confidence 34444444445555555554444444444557999999888754443320 2234
Q ss_pred eeEEEEeCC----EEEEEeCCCeEEEEec-----cCCCCcceeeEEEe--cCc--ceEEEEecCCceeEecccceeeeeC
Q 041206 168 VNALVVNND----LLFAGSEGGVISVWKG-----TFVANPFKQVASIR--APL--WFCSLSSSNDTRWNSKEEAAVFEFC 234 (371)
Q Consensus 168 v~~~~~~~~----~l~~~~~dg~v~iwd~-----~~~~~~~~~~~~~~--~~~--~v~~~~~~~~~~l~~~~~~~~~~~~ 234 (371)
|.++.|... .+++.+..+.|.+|.- ......+.++..+. .+. +|.+..|.++|.+++| .
T Consensus 75 I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~--------s 146 (631)
T PF12234_consen 75 IRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVG--------S 146 (631)
T ss_pred eeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEE--------e
Confidence 777777533 6666677788888743 22222334444433 333 8899999999987665 3
Q ss_pred CCeEEEEEC
Q 041206 235 GHTTRTWNL 243 (371)
Q Consensus 235 dg~i~iwd~ 243 (371)
++.+.|+|-
T Consensus 147 GNqlfv~dk 155 (631)
T PF12234_consen 147 GNQLFVFDK 155 (631)
T ss_pred CCEEEEECC
Confidence 567777764
No 367
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.68 E-value=0.36 Score=41.66 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=42.4
Q ss_pred eEEEEeccCCCCcceeeEEEecCcceEEEEecCCce--eEecccceeeeeCCCeEEEEECCCceEEEEeec
Q 041206 186 VISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR--WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKG 254 (371)
Q Consensus 186 ~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 254 (371)
.|.++|+.+. +.+..+....++.+|.++.+.+ |++. ...++.+.+||..+++.+.++..
T Consensus 270 eVWv~D~~t~----krv~Ri~l~~~~~Si~Vsqd~~P~L~~~------~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 270 EVWVYDLKTH----KRVARIPLEHPIDSIAVSQDDKPLLYAL------SAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEETTTT----EEEEEEEEEEEESEEEEESSSS-EEEEE------ETTTTEEEEEETTT--EEEEE--
T ss_pred EEEEEECCCC----eEEEEEeCCCccceEEEccCCCcEEEEE------cCCCCeEEEEeCcCCcEEeehhc
Confidence 4777788887 7777777655788999999875 4433 04578999999999999988874
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.045 Score=49.10 Aligned_cols=126 Identities=10% Similarity=0.024 Sum_probs=83.3
Q ss_pred eCCCeEEEEECCCceEEEEeecCCCcEEEEEEc---------CCeEEEEeCCCcEEEEEccCCCCc----------ceec
Q 041206 233 FCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW---------DEYLFSSSLDETIKIWLYTHTKNN----------AELS 293 (371)
Q Consensus 233 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~---------~~~l~s~~~dg~i~iwd~~~~~~~----------~~~~ 293 (371)
.....++-.|++.|+.+..+..+.. |+-+.+. +..-+.|-.|..|.-||.+..... ..-+
T Consensus 353 ~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~ 431 (644)
T KOG2395|consen 353 GEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKN 431 (644)
T ss_pred CCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccccc
Confidence 6667889999999999999998776 5555554 123345667888999997754431 0001
Q ss_pred ceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec--CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcc
Q 041206 294 SLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF--SRREVEVDQIGPAG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 294 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~ 362 (371)
...+.....++ ++++|+.+|.||+||- .++...+.. -..+|..+..+.+| +|++.+ +..+.+-++.
T Consensus 432 nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 432 NFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 22222333344 8999999999999997 444333333 27899999999999 333332 5566665543
No 369
>PHA02713 hypothetical protein; Provisional
Probab=96.58 E-value=0.26 Score=46.60 Aligned_cols=128 Identities=7% Similarity=-0.025 Sum_probs=65.9
Q ss_pred eEEEEECCCceEEE--EeecCCCcEEEEEEcCCeEEEEeCCC-----------------------cEEEEEccCCCC--c
Q 041206 237 TTRTWNLDNLECVQ--TLKGHSDTVTSLLFWDEYLFSSSLDE-----------------------TIKIWLYTHTKN--N 289 (371)
Q Consensus 237 ~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~dg-----------------------~i~iwd~~~~~~--~ 289 (371)
.+..||..+.+-.. .+.........+.+.+...+.|+.++ .+..||....+= .
T Consensus 368 sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v 447 (557)
T PHA02713 368 TIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL 447 (557)
T ss_pred eEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec
Confidence 58889988764332 22222222233444566667676542 466777554321 0
Q ss_pred c---eecceEEEEecCCCCEEEEecCC------CeEEEEEcCC---cceeeeecCCceEEEEEeCCCC-eEEeeCCCC--
Q 041206 290 A---ELSSLFGMLDAEAKPVLFSSGKD------SAIRLYELPS---FKLRARIFSRREVEVDQIGPAG-LFFPGDASG-- 354 (371)
Q Consensus 290 ~---~~~~~~~~~~~~~~~~l~~~~~d------~~i~iwd~~~---~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg-- 354 (371)
. ....-..+....+. +.+.|+.+ ..+..||+.+ ++.+..+........++.. ++ ..++|+.||
T Consensus 448 ~~m~~~r~~~~~~~~~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~-~~~iyv~Gg~~~~~ 525 (557)
T PHA02713 448 PNFWTGTIRPGVVSHKDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH-DNTIMMLHCYESYM 525 (557)
T ss_pred CCCCcccccCcEEEECCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE-CCEEEEEeeeccee
Confidence 0 00011112233333 56666643 2467899886 3344444322222233332 55 888888888
Q ss_pred cEEEEEccccce
Q 041206 355 SVGVWKWLLAEQ 366 (371)
Q Consensus 355 ~i~iw~~~~~~~ 366 (371)
.+..||..+.+-
T Consensus 526 ~~e~yd~~~~~W 537 (557)
T PHA02713 526 LQDTFNVYTYEW 537 (557)
T ss_pred ehhhcCcccccc
Confidence 777888776543
No 370
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.50 E-value=0.39 Score=45.51 Aligned_cols=221 Identities=12% Similarity=0.121 Sum_probs=112.4
Q ss_pred CCCCEEEEEeCCC------cEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC-EE
Q 041206 106 SGSNKLYSGSRDG------RVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND-LL 178 (371)
Q Consensus 106 ~~~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~-~l 178 (371)
..+.+++.|+.++ .+..+|..+++-........+ ..-.+++..++ ..
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~--------------------------r~~~~~~~~~~~lY 336 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSP--------------------------RCRVGVAVLNGKLY 336 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcc--------------------------cccccEEEECCEEE
Confidence 3456677777663 577777776643333222111 01344555555 77
Q ss_pred EEEeCC------CeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eEecccceeeeeCCC-----eEEEEECCCc
Q 041206 179 FAGSEG------GVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFCGH-----TTRTWNLDNL 246 (371)
Q Consensus 179 ~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg-----~i~iwd~~~~ 246 (371)
++|+.+ ..+..||..+.. +..+..+.....-.+++.. +|. .+.| +.|| ++-.||.++.
T Consensus 337 v~GG~~~~~~~l~~ve~YD~~~~~--W~~~a~M~~~R~~~~v~~l-~g~iYavG-------G~dg~~~l~svE~YDp~~~ 406 (571)
T KOG4441|consen 337 VVGGYDSGSDRLSSVERYDPRTNQ--WTPVAPMNTKRSDFGVAVL-DGKLYAVG-------GFDGEKSLNSVECYDPVTN 406 (571)
T ss_pred EEccccCCCcccceEEEecCCCCc--eeccCCccCccccceeEEE-CCEEEEEe-------ccccccccccEEEecCCCC
Confidence 788877 357778877763 2222222222211122222 244 5666 6665 4677888765
Q ss_pred eEE--EEeecCCCcEEEEEEcCCeEEEEeCCC------cEEEEEccCCCC-----cceecceEEEEecCCCCEEEEecCC
Q 041206 247 ECV--QTLKGHSDTVTSLLFWDEYLFSSSLDE------TIKIWLYTHTKN-----NAELSSLFGMLDAEAKPVLFSSGKD 313 (371)
Q Consensus 247 ~~~--~~~~~~~~~v~~~~~~~~~l~s~~~dg------~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~d 313 (371)
+-- ..+.........+.+.+...+.|+.++ ++..||..+..= ......-..+..-++. +.+.|+.|
T Consensus 407 ~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~-iYvvGG~~ 485 (571)
T KOG4441|consen 407 KWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGK-IYVVGGFD 485 (571)
T ss_pred cccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCE-EEEECCcc
Confidence 432 222222223334445577777887554 466777554431 1111111223333333 77778777
Q ss_pred C-----eEEEEEcCCcceeee--ecC-CceEEEEEeCCCC-eEEeeCCCC-----cEEEEEccccc
Q 041206 314 S-----AIRLYELPSFKLRAR--IFS-RREVEVDQIGPAG-LFFPGDASG-----SVGVWKWLLAE 365 (371)
Q Consensus 314 ~-----~i~iwd~~~~~~~~~--~~~-~~~v~~~~~s~~~-~l~~~~~dg-----~i~iw~~~~~~ 365 (371)
+ +|..||..+.+-... ... ...+....+ ++ ..+.|+.|| +|..||..+.+
T Consensus 486 ~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 486 GTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred CCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence 6 377788877553322 222 222222222 34 777888776 45666655543
No 371
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.50 E-value=0.22 Score=40.08 Aligned_cols=91 Identities=14% Similarity=0.119 Sum_probs=60.0
Q ss_pred eEEEEeCC---EEEEEeCCCeEEEEe--ccCCCCc-ceeeEEEecC----c-ceEEEEecCCce-eEecccceeeeeCCC
Q 041206 169 NALVVNND---LLFAGSEGGVISVWK--GTFVANP-FKQVASIRAP----L-WFCSLSSSNDTR-WNSKEEAAVFEFCGH 236 (371)
Q Consensus 169 ~~~~~~~~---~l~~~~~dg~v~iwd--~~~~~~~-~~~~~~~~~~----~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg 236 (371)
+.++|+.+ +.++-+.+-+|.-|| +.++.-. .+.+..++.. . ..-.+++..+|. +++. -..+
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~-------~ng~ 233 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVAT-------FNGG 233 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEE-------ecCc
Confidence 45667655 556666677776676 4444211 1222233321 1 233445555666 4555 7789
Q ss_pred eEEEEECCCceEEEEeecCCCcEEEEEEcC
Q 041206 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFWD 266 (371)
Q Consensus 237 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 266 (371)
+|...|..+|+.+.+++-....|++++|-+
T Consensus 234 ~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 234 TVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred EEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 999999999999999998999999999984
No 372
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.46 E-value=0.67 Score=42.15 Aligned_cols=235 Identities=13% Similarity=0.077 Sum_probs=121.6
Q ss_pred CeEEEEEcCCCCEEEEE-eCCC----cEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEE
Q 041206 98 AVTNVGLPSGSNKLYSG-SRDG----RVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALV 172 (371)
Q Consensus 98 ~V~~~~~~~~~~~l~s~-~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~ 172 (371)
.+...+++|+++++|-+ +..| .+++.|+++|+.+...-... ....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~----------------------------~~~~~~ 176 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP----------------------------KFSSVS 176 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE----------------------------ESEEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc----------------------------ccceEE
Confidence 34467899999988754 4444 59999999997654321100 012367
Q ss_pred EeCC---EEEEEeC----------CCeEEEEeccCCCCcceeeEEEecCc--c-eEEEEecCCce-eE-ecccceeeeeC
Q 041206 173 VNND---LLFAGSE----------GGVISVWKGTFVANPFKQVASIRAPL--W-FCSLSSSNDTR-WN-SKEEAAVFEFC 234 (371)
Q Consensus 173 ~~~~---~l~~~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~--~-v~~~~~~~~~~-l~-~~~~~~~~~~~ 234 (371)
|.++ ++.+... ...|+.|.+.+... +-...+.... . ...+..++|++ ++ .. ....
T Consensus 177 W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~--~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~-----~~~~ 249 (414)
T PF02897_consen 177 WSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQS--EDELVFEEPDEPFWFVSVSRSKDGRYLFISS-----SSGT 249 (414)
T ss_dssp ECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GG--G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEE-----ESSS
T ss_pred EeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChH--hCeeEEeecCCCcEEEEEEecCcccEEEEEE-----Eccc
Confidence 7666 3333322 23477888877632 2123344433 3 67888999987 32 22 0023
Q ss_pred C-CeEEEEECCCc-----eEEEEeecCCCcEEEEEEcCCeEEEEe----CCCcEEEEEccCCCCccee---------cce
Q 041206 235 G-HTTRTWNLDNL-----ECVQTLKGHSDTVTSLLFWDEYLFSSS----LDETIKIWLYTHTKNNAEL---------SSL 295 (371)
Q Consensus 235 d-g~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~---------~~~ 295 (371)
+ ..+++.|+..+ +.........+....+...+..+..-+ ..+.|...++......... ..+
T Consensus 250 ~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l 329 (414)
T PF02897_consen 250 SESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSL 329 (414)
T ss_dssp SEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEE
T ss_pred cCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeE
Confidence 3 57888998874 333333333333344544455333322 2345666666655431111 012
Q ss_pred EEEEecCCCCEEEEecCCC--eEEEEEcC-Ccceeeeec-CCceEEEEEeCCCC---eEEeeCC--CCcEEEEEccccce
Q 041206 296 FGMLDAEAKPVLFSSGKDS--AIRLYELP-SFKLRARIF-SRREVEVDQIGPAG---LFFPGDA--SGSVGVWKWLLAEQ 366 (371)
Q Consensus 296 ~~~~~~~~~~~l~~~~~d~--~i~iwd~~-~~~~~~~~~-~~~~v~~~~~s~~~---~l~~~~~--dg~i~iw~~~~~~~ 366 (371)
..+. ..++.+++..-.++ .|+++++. ......... ..+.|..+...+++ ++...|. -+.+..||+.+++.
T Consensus 330 ~~~~-~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 330 EDVS-LFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEE-EETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEEE-EECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 2222 22332444444444 58889998 443333222 35667777766666 3333332 35788888888765
Q ss_pred ec
Q 041206 367 QK 368 (371)
Q Consensus 367 ~~ 368 (371)
..
T Consensus 409 ~~ 410 (414)
T PF02897_consen 409 TL 410 (414)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 373
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.33 E-value=0.43 Score=38.53 Aligned_cols=135 Identities=13% Similarity=0.125 Sum_probs=75.1
Q ss_pred ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEeecCC--------CcEEEEEEc---CCeEEEEeCCCcE
Q 041206 210 WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHS--------DTVTSLLFW---DEYLFSSSLDETI 278 (371)
Q Consensus 210 ~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~--------~~v~~~~~~---~~~l~s~~~dg~i 278 (371)
..+.-..+|+|+++.| ...-.=..+....+.+..-+.+|. .--+.++|+ ..+.+.-+.+-+|
T Consensus 110 R~NDgkvdP~Gryy~G-------tMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGG-------TMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred ccccCccCCCCceeee-------eeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEE
Confidence 6677788999987666 221111122222233322223332 222456666 2344455566667
Q ss_pred EEEEcc----------------CCCCcceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEEe
Q 041206 279 KIWLYT----------------HTKNNAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQI 341 (371)
Q Consensus 279 ~iwd~~----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~ 341 (371)
.-||.. ..++...... -.+.....+.+.++.-+.++|..+|+.+++.+.++. ....+++++|
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~P-DGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccF 261 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEP-DGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCF 261 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCC-CcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence 667732 2211111100 011112345577777788999999999999999887 5788999999
Q ss_pred CCCC---eEEeeCC
Q 041206 342 GPAG---LFFPGDA 352 (371)
Q Consensus 342 s~~~---~l~~~~~ 352 (371)
--.+ +.+|+..
T Consensus 262 gGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 262 GGKNLDILYVTTAA 275 (310)
T ss_pred cCCCccEEEEEehh
Confidence 7553 4555543
No 374
>PHA02713 hypothetical protein; Provisional
Probab=96.22 E-value=0.47 Score=44.96 Aligned_cols=50 Identities=6% Similarity=0.056 Sum_probs=28.9
Q ss_pred eEEEEECCC-ce--EEEEeecCCCcEEEEEEcCCeEEEEeCCC--cEEEEEccCC
Q 041206 237 TTRTWNLDN-LE--CVQTLKGHSDTVTSLLFWDEYLFSSSLDE--TIKIWLYTHT 286 (371)
Q Consensus 237 ~i~iwd~~~-~~--~~~~~~~~~~~v~~~~~~~~~l~s~~~dg--~i~iwd~~~~ 286 (371)
.+..||.++ .+ .+..+.........+.+.+...+.|+.++ .+..||..+.
T Consensus 481 ~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 481 CIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred eEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcCcccc
Confidence 467788886 33 33444433344444555577777888777 4555554443
No 375
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.05 E-value=0.022 Score=45.38 Aligned_cols=102 Identities=16% Similarity=0.165 Sum_probs=65.9
Q ss_pred EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc--eeEecccceeeeeCCCeEEEEECCCceEEEEee
Q 041206 177 LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT--RWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLK 253 (371)
Q Consensus 177 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~--~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~ 253 (371)
.+++|+.+|.|.+|...... .......... .|.++....+. ...++ ..+|.|+.|++.-++.+-...
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g---~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~-------~~dg~ir~~n~~p~k~~g~~g 141 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEG---AHSDRVCSGEESIDLGIPNGRDSSLGCVG-------AQDGRIRACNIKPNKVLGYVG 141 (238)
T ss_pred eEEeecccceEEEecCCccc---hHHHhhhcccccceeccccccccceeEEe-------ccCCceeeeccccCceeeeec
Confidence 78999999999999887432 1111111112 44444433333 36777 999999999999888776666
Q ss_pred cCC-CcEEEEEEc--CCeEEEE--eCCCcEEEEEccCCCC
Q 041206 254 GHS-DTVTSLLFW--DEYLFSS--SLDETIKIWLYTHTKN 288 (371)
Q Consensus 254 ~~~-~~v~~~~~~--~~~l~s~--~~dg~i~iwd~~~~~~ 288 (371)
.|. .++...... +..++.+ |.|..++.|++.....
T Consensus 142 ~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d 181 (238)
T KOG2444|consen 142 QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKD 181 (238)
T ss_pred cccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhc
Confidence 676 455444444 5666666 7777777777665543
No 376
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.83 E-value=0.9 Score=37.82 Aligned_cols=129 Identities=11% Similarity=0.051 Sum_probs=78.1
Q ss_pred ceeeEeeeCcc-CCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEE
Q 041206 86 LATLMKLNGHK-KAVTNVGLPSGSNKLYSGSRDG--RVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWR 162 (371)
Q Consensus 86 ~~~~~~l~~h~-~~V~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 162 (371)
.+.+.++.... .-...+.|..++.++-|.+.-| .|+.+|+.+++.......+....
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~F--------------------- 91 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYF--------------------- 91 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-----------------------
T ss_pred eEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccc---------------------
Confidence 35566665222 2356777877888888888766 79999999999887766543311
Q ss_pred eCCCCeeEEEEeCCE-EEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCc-eeEecccceeeeeCCCeEEE
Q 041206 163 VNAASVNALVVNNDL-LFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDT-RWNSKEEAAVFEFCGHTTRT 240 (371)
Q Consensus 163 ~~~~~v~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~~~~~~~~dg~i~i 240 (371)
--.++...+. ....=.++...+||..+. +.+.++.-...=..++ .|+ .|+.+ .....++.
T Consensus 92 -----gEGit~~~d~l~qLTWk~~~~f~yd~~tl----~~~~~~~y~~EGWGLt--~dg~~Li~S-------DGS~~L~~ 153 (264)
T PF05096_consen 92 -----GEGITILGDKLYQLTWKEGTGFVYDPNTL----KKIGTFPYPGEGWGLT--SDGKRLIMS-------DGSSRLYF 153 (264)
T ss_dssp -----EEEEEEETTEEEEEESSSSEEEEEETTTT----EEEEEEE-SSS--EEE--ECSSCEEEE--------SSSEEEE
T ss_pred -----ceeEEEECCEEEEEEecCCeEEEEccccc----eEEEEEecCCcceEEE--cCCCEEEEE-------CCccceEE
Confidence 1234444442 222335788899999887 7777776544334444 334 46666 77889999
Q ss_pred EECCCceEEEEee
Q 041206 241 WNLDNLECVQTLK 253 (371)
Q Consensus 241 wd~~~~~~~~~~~ 253 (371)
+|..+.+....+.
T Consensus 154 ~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 154 LDPETFKEVRTIQ 166 (264)
T ss_dssp E-TTT-SEEEEEE
T ss_pred ECCcccceEEEEE
Confidence 9998876655554
No 377
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.80 E-value=0.33 Score=40.41 Aligned_cols=201 Identities=14% Similarity=0.115 Sum_probs=95.6
Q ss_pred EEcCCCCEEEEEeCC-----CcEEEEECCCC-ceEEEEeCC---CeeEEEeecCCEEEEecCCcEEEE-EeCCCCeeEEE
Q 041206 103 GLPSGSNKLYSGSRD-----GRVSVWDRDSG-RCVNVITNG---AEIGCLISEGSWVFLGLPNAVKSW-RVNAASVNALV 172 (371)
Q Consensus 103 ~~~~~~~~l~s~~~d-----g~v~iwd~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~v~~~~ 172 (371)
.|||||.+|+..-.| |.|-|||.+.+ +.+..+... ..-..+..++..+++.+.+ |..- +.-..+.+
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGG-IethpdfgR~~lN--- 195 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGG-IETHPDFGRTELN--- 195 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCc-eecccccCccccc---
Confidence 499999999986443 67999998744 334444431 1122333455555443222 1111 11000111
Q ss_pred EeCCEEEEEeCCCeEEEEeccCCCCcceeeE--EEe--cCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCce
Q 041206 173 VNNDLLFAGSEGGVISVWKGTFVANPFKQVA--SIR--APL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLE 247 (371)
Q Consensus 173 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~--~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~ 247 (371)
.-+-.-.+.+.|..++ ..+. ++. .+. .+..++..+||.++.|.+.-.- ..|---.+=-...++
T Consensus 196 -------ldsMePSlvlld~atG----~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~-~~d~ppLvg~~~~g~ 263 (366)
T COG3490 196 -------LDSMEPSLVLLDAATG----NLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGP-RNDLPPLVGHFRKGE 263 (366)
T ss_pred -------hhhcCccEEEEecccc----chhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCC-CccCCcceeeccCCC
Confidence 1111122333343333 2222 222 334 8899999999986665110000 001111111112233
Q ss_pred EEEEeec-------CCCcEEEEEEc--CCe-EEEEeCCCcEEEEEccCCCC--cceecceEEEEecCCCCEEEEecCCCe
Q 041206 248 CVQTLKG-------HSDTVTSLLFW--DEY-LFSSSLDETIKIWLYTHTKN--NAELSSLFGMLDAEAKPVLFSSGKDSA 315 (371)
Q Consensus 248 ~~~~~~~-------~~~~v~~~~~~--~~~-l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d~~ 315 (371)
++..+.. ....|-+++.+ ..+ .+|+-..+...+||..+..- ...+...+.+....++ +++.+.+|.
T Consensus 264 ~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~daaGva~~~~g--f~vssg~G~ 341 (366)
T COG3490 264 PLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDAAGVAAAKGG--FAVSSGQGR 341 (366)
T ss_pred cCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccccccceeccCc--eEEecCCce
Confidence 3333321 12356677776 334 44555666788999887763 2222233334444444 556667788
Q ss_pred EEEEEc
Q 041206 316 IRLYEL 321 (371)
Q Consensus 316 i~iwd~ 321 (371)
+.++.-
T Consensus 342 ~~~~s~ 347 (366)
T COG3490 342 IIFYSR 347 (366)
T ss_pred EEeccc
Confidence 887743
No 378
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.79 E-value=0.94 Score=37.71 Aligned_cols=181 Identities=11% Similarity=0.069 Sum_probs=92.7
Q ss_pred EeeeCccCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceEEEEeCCC--eeEEEee--cCCEEEEec-CCcEEEEEe
Q 041206 90 MKLNGHKKAVTNVGLPSGSN-KLYSGSRDGRVSVWDRDSGRCVNVITNGA--EIGCLIS--EGSWVFLGL-PNAVKSWRV 163 (371)
Q Consensus 90 ~~l~~h~~~V~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~-~~~i~~~~~ 163 (371)
+.+.+-.+.+..++|+|+.+ +++.....+.|...+. +|+.++.++... ....+.. ++.++++.. ++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 45666667799999999755 5555667788888886 588888887642 2344433 344444442 566666655
Q ss_pred CCC----------------------CeeEEEEeCC--EEEEEeCCCeEEEEeccC--CCCcceeeEE--Ee---cCc-ce
Q 041206 164 NAA----------------------SVNALVVNND--LLFAGSEGGVISVWKGTF--VANPFKQVAS--IR---APL-WF 211 (371)
Q Consensus 164 ~~~----------------------~v~~~~~~~~--~l~~~~~dg~v~iwd~~~--~~~~~~~~~~--~~---~~~-~v 211 (371)
... .+-.++|++. .|+++-......+|.+.. .......... +. ... .+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 221 4678888886 666677776677776654 1110000000 01 111 56
Q ss_pred EEEEecCCc-e-eEecccceeeeeCCCeEEEEECCCceEEEEeecCC---------CcEEEEEEc-CCeEEEEeCCCcEE
Q 041206 212 CSLSSSNDT-R-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHS---------DTVTSLLFW-DEYLFSSSLDETIK 279 (371)
Q Consensus 212 ~~~~~~~~~-~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~~-~~~l~s~~~dg~i~ 279 (371)
.+++++|.. . ++.+ ..+..|..+| .+|+++..+.-.. .+--.|+|. ...|...+.-+..+
T Consensus 174 S~l~~~p~t~~lliLS-------~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy 245 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILS-------DESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFY 245 (248)
T ss_dssp -EEEEETTTTEEEEEE-------TTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEE
T ss_pred cceEEcCCCCeEEEEE-------CCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEE
Confidence 788888854 4 5555 7788888888 5567665554222 245567776 23444444444333
No 379
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.72 E-value=0.82 Score=39.26 Aligned_cols=158 Identities=11% Similarity=0.039 Sum_probs=0.0
Q ss_pred EeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCee
Q 041206 90 MKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVN 169 (371)
Q Consensus 90 ~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~ 169 (371)
....+-.+.+..+..+++|++++.++.-....-||-....-......... .|.
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~---------------------------riq 190 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSR---------------------------RIQ 190 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS----------------------------EE
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccc---------------------------eeh
Q ss_pred EEEEeCC-EEEEEeCCCeEEEEe-ccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEE--EECC
Q 041206 170 ALVVNND-LLFAGSEGGVISVWK-GTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRT--WNLD 244 (371)
Q Consensus 170 ~~~~~~~-~l~~~~~dg~v~iwd-~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~i--wd~~ 244 (371)
++.|.++ .|......|.|+.=+ ......-.+......... .+..+++.+++.+.++ +..|.+.+ =.-+
T Consensus 191 ~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~-------gg~G~l~~S~DgGk 263 (302)
T PF14870_consen 191 SMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAV-------GGSGTLLVSTDGGK 263 (302)
T ss_dssp EEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEE-------ESTT-EEEESSTTS
T ss_pred hceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEE-------eCCccEEEeCCCCc
Q ss_pred CceEEEEeecCCCcEEEEEEc-CCeEEEEeCCCcEEEE
Q 041206 245 NLECVQTLKGHSDTVTSLLFW-DEYLFSSSLDETIKIW 281 (371)
Q Consensus 245 ~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iw 281 (371)
+.+.......-...++.+.|. ++.-+..+.+|.|--|
T Consensus 264 tW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 264 TWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp S-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred cceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
No 380
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.67 E-value=1.6 Score=39.43 Aligned_cols=242 Identities=13% Similarity=0.088 Sum_probs=128.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc-----eEEEEeCCCeeEEEee-------cCCEEEEecCCcEEEEEeCCC--------
Q 041206 107 GSNKLYSGSRDGRVSVWDRDSGR-----CVNVITNGAEIGCLIS-------EGSWVFLGLPNAVKSWRVNAA-------- 166 (371)
Q Consensus 107 ~~~~l~s~~~dg~v~iwd~~~~~-----~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~-------- 166 (371)
+...++.||..|.++|++...+. .+-+.....+|..+.. +...+++-..+.+.+|.+...
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 44689999999999999975443 4445556677776653 245677777788888877222
Q ss_pred --------------CeeEEEEe-------CCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCc-eeEe
Q 041206 167 --------------SVNALVVN-------NDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDT-RWNS 224 (371)
Q Consensus 167 --------------~v~~~~~~-------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~ 224 (371)
....++.- .+++.+-+-||.+.+|+-+.. .....+...--...+.+.+.. .+++
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~----~f~~~lp~~llPgPl~Y~~~tDsfvt 191 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF----AFSRFLPDFLLPGPLCYCPRTDSFVT 191 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE----EEEEEcCCCCCCcCeEEeecCCEEEE
Confidence 12222221 238888999999999987764 222223321133455666643 3666
Q ss_pred cccceeeeeCCCeEEEEECC--------------------------------CceEEEEee---cCCCcEEEEEEcCCeE
Q 041206 225 KEEAAVFEFCGHTTRTWNLD--------------------------------NLECVQTLK---GHSDTVTSLLFWDEYL 269 (371)
Q Consensus 225 ~~~~~~~~~~dg~i~iwd~~--------------------------------~~~~~~~~~---~~~~~v~~~~~~~~~l 269 (371)
+ +.+..+..|... =|+.+..+. .......-+....+.|
T Consensus 192 ~-------sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~L 264 (418)
T PF14727_consen 192 A-------SSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERSL 264 (418)
T ss_pred e-------cCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecceE
Confidence 6 555555555432 122111111 0000101111113344
Q ss_pred EEEeCCCcEEEEEccCCCCcceecceEEEEe-----cCCCCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCC-
Q 041206 270 FSSSLDETIKIWLYTHTKNNAELSSLFGMLD-----AEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGP- 343 (371)
Q Consensus 270 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~- 343 (371)
+.-..+|.++.=. +.. ....++..... +.....++.++.++++.||.=.+ ++.........-++....
T Consensus 265 f~l~~~G~l~~~k-rLd---~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~--L~WsA~l~~~PVal~v~~~ 338 (418)
T PF14727_consen 265 FCLKDNGSLRFQK-RLD---YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT--LVWSAQLPHVPVALSVANF 338 (418)
T ss_pred EEEcCCCeEEEEE-ecC---CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--EEEecCCCCCCEEEEeccc
Confidence 4445556444321 111 11111111111 11122588889999999997443 444333222222444332
Q ss_pred ---CCeEEeeCCCCcEEEEEccccc
Q 041206 344 ---AGLFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 344 ---~~~l~~~~~dg~i~iw~~~~~~ 365 (371)
+|.|++-+.+|.+.+-=+.+.+
T Consensus 339 ~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 339 NGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred CCCCceEEEEcCCCcEEEEEeCCCC
Confidence 3499999999999886665543
No 381
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.67 E-value=1.9 Score=40.50 Aligned_cols=180 Identities=12% Similarity=0.037 Sum_probs=102.2
Q ss_pred CCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc--ceE---E-------EEecCCceeEecccceeeeeCCCeEEEEE
Q 041206 175 NDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL--WFC---S-------LSSSNDTRWNSKEEAAVFEFCGHTTRTWN 242 (371)
Q Consensus 175 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~v~---~-------~~~~~~~~l~~~~~~~~~~~~dg~i~iwd 242 (371)
.+.+++++.++.|.-+|..++ +.+-.+.... .+. + +++. +++++.+ +.++.+.-.|
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TG----k~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~~v~v~-------t~dg~l~ALD 136 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTG----KELWKYDPKLPDDVIPVMCCDVVNRGVALY-DGKVFFG-------TLDARLVALD 136 (527)
T ss_pred CCEEEEECCCCcEEEEECCCC----ceeeEecCCCCcccccccccccccccceEE-CCEEEEE-------cCCCEEEEEE
Confidence 447777777888888888888 3333332211 111 1 1111 2455556 8899999999
Q ss_pred CCCceEEEEeecC--CC--cEEE-EEEcCCeEEEEeC------CCcEEEEEccCCCCcceec------------------
Q 041206 243 LDNLECVQTLKGH--SD--TVTS-LLFWDEYLFSSSL------DETIKIWLYTHTKNNAELS------------------ 293 (371)
Q Consensus 243 ~~~~~~~~~~~~~--~~--~v~~-~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~------------------ 293 (371)
.++|+.+-..... .. .+.+ -...+..++.+.. +|.|.-+|.++.+..-...
T Consensus 137 a~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~ 216 (527)
T TIGR03075 137 AKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGG 216 (527)
T ss_pred CCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccc
Confidence 9999998665421 11 1111 1122445555442 6788888865544210000
Q ss_pred -----------------ce--EEEEecCCCCEEEEecCC-----C-----------eEEEEEcCCcceeeeecC-C----
Q 041206 294 -----------------SL--FGMLDAEAKPVLFSSGKD-----S-----------AIRLYELPSFKLRARIFS-R---- 333 (371)
Q Consensus 294 -----------------~~--~~~~~~~~~~~l~~~~~d-----~-----------~i~iwd~~~~~~~~~~~~-~---- 333 (371)
.+ .....+..+ +++.+..+ + .|.-.|+++++.+..+.. .
T Consensus 217 ~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~-lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~w 295 (527)
T TIGR03075 217 EPGAKTWPGDAWKTGGGATWGTGSYDPETN-LIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEW 295 (527)
T ss_pred ccccCCCCCCccccCCCCccCceeEcCCCC-eEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCc
Confidence 00 011222233 45444321 2 566778999998887763 1
Q ss_pred -----ceEEEEEeCCCC----eEEeeCCCCcEEEEEcccccee
Q 041206 334 -----REVEVDQIGPAG----LFFPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 334 -----~~v~~~~~s~~~----~l~~~~~dg~i~iw~~~~~~~~ 367 (371)
....-+.+..+| .++.+..+|.+++.|-.+++++
T Consensus 296 D~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 296 DYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 122223333355 7789999999999999988874
No 382
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.38 E-value=2 Score=38.65 Aligned_cols=206 Identities=13% Similarity=0.088 Sum_probs=121.7
Q ss_pred CeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC
Q 041206 98 AVTNVGLPSGSNKL-YSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND 176 (371)
Q Consensus 98 ~V~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~ 176 (371)
.-..+++++.++.+ ++...+..|.+.|..+.+.......+. ....++++++
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~----------------------------~P~~~~~~~~ 126 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL----------------------------GPVGLAVDPD 126 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc----------------------------CCceEEECCC
Confidence 34567788877744 444456889999988777777666432 2456677766
Q ss_pred --EEEEEeC---CCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eE-ecccceeeeeCCCeEEEEECCCceE
Q 041206 177 --LLFAGSE---GGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WN-SKEEAAVFEFCGHTTRTWNLDNLEC 248 (371)
Q Consensus 177 --~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~-~~~~~~~~~~~dg~i~iwd~~~~~~ 248 (371)
.+.++.. ++.+.+.|-.+. +......... + ..+++.|++. ++ +- ..++.|.+.|......
T Consensus 127 ~~~vYV~n~~~~~~~vsvid~~t~----~~~~~~~vG~~P-~~~a~~p~g~~vyv~~-------~~~~~v~vi~~~~~~v 194 (381)
T COG3391 127 GKYVYVANAGNGNNTVSVIDAATN----KVTATIPVGNTP-TGVAVDPDGNKVYVTN-------SDDNTVSVIDTSGNSV 194 (381)
T ss_pred CCEEEEEecccCCceEEEEeCCCC----eEEEEEecCCCc-ceEEECCCCCeEEEEe-------cCCCeEEEEeCCCcce
Confidence 4444333 688888888887 5666655444 5 8999999996 44 44 5789999999876655
Q ss_pred EE-----EeecCCCcEEEEEEc--CCeEEEEeCC---CcEEEEEccCCCCcce---ec--ceEEEEecCCCCEEEEe-cC
Q 041206 249 VQ-----TLKGHSDTVTSLLFW--DEYLFSSSLD---ETIKIWLYTHTKNNAE---LS--SLFGMLDAEAKPVLFSS-GK 312 (371)
Q Consensus 249 ~~-----~~~~~~~~v~~~~~~--~~~l~s~~~d---g~i~iwd~~~~~~~~~---~~--~~~~~~~~~~~~~l~~~-~~ 312 (371)
.+ ...... .-..+.++ ++++...... +.+...|......... .. ........+.+..+.+. ..
T Consensus 195 ~~~~~~~~~~~~~-~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~ 273 (381)
T COG3391 195 VRGSVGSLVGVGT-GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ 273 (381)
T ss_pred eccccccccccCC-CCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC
Confidence 43 121112 22334444 5544433322 5777777655442111 10 11122333444455555 44
Q ss_pred CCeEEEEEcCCcceeeeecC----CceEEEEEeCCC
Q 041206 313 DSAIRLYELPSFKLRARIFS----RREVEVDQIGPA 344 (371)
Q Consensus 313 d~~i~iwd~~~~~~~~~~~~----~~~v~~~~~s~~ 344 (371)
.+.+.+.|..+......... ...+..+++.+.
T Consensus 274 ~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 274 GGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred CCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 58899999888776665442 223555555443
No 383
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.33 E-value=0.13 Score=50.17 Aligned_cols=104 Identities=13% Similarity=0.109 Sum_probs=74.0
Q ss_pred CcEEEEEEcCCeEEEEeCCCcEEEEEccCCC-----CcceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec
Q 041206 257 DTVTSLLFWDEYLFSSSLDETIKIWLYTHTK-----NNAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF 331 (371)
Q Consensus 257 ~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 331 (371)
..+.+.+.-...++.|+..|.+-..|++..- ......+++.+.++.++.+++.|-.+|.|.+||+..+++...+.
T Consensus 90 ~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~ 169 (1206)
T KOG2079|consen 90 AGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT 169 (1206)
T ss_pred cceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee
Confidence 3445555556778889999999888866522 23344567777888888899999999999999999988777665
Q ss_pred -CCc---eEEEEEeCCCC-eEEeeCCCCcEEEEEcc
Q 041206 332 -SRR---EVEVDQIGPAG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 332 -~~~---~v~~~~~s~~~-~l~~~~~dg~i~iw~~~ 362 (371)
+.. .|..+.+..++ .+.++..-|. +|++.
T Consensus 170 e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 170 EHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 332 33344444455 8888888887 66654
No 384
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.17 E-value=1.7 Score=36.85 Aligned_cols=204 Identities=17% Similarity=0.102 Sum_probs=107.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC-CCe-eEEEeecCCEEEEecCCcEEEEEeCCCCeeEEE---
Q 041206 98 AVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN-GAE-IGCLISEGSWVFLGLPNAVKSWRVNAASVNALV--- 172 (371)
Q Consensus 98 ~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~--- 172 (371)
.|..+...|+-+.|+.-+ |+.+.++++........... ..+ ..+.. .. -.....+..++
T Consensus 37 ~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~-------------~~--~~~~~~v~~f~~~~ 100 (275)
T PF00780_consen 37 SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLP-------------TK--LPETKGVSFFAVNG 100 (275)
T ss_pred eEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccccc-------------cc--ccccCCeeEEeecc
Confidence 399999999877777765 59999999886654432110 000 00000 00 00111234444
Q ss_pred E-eCC-EEEEEeCCCeEEEEeccCCCCcc-eeeEEEecCcceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEE
Q 041206 173 V-NND-LLFAGSEGGVISVWKGTFVANPF-KQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECV 249 (371)
Q Consensus 173 ~-~~~-~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~ 249 (371)
. ... .++++ ....|.+|........+ +..+.+.....+.+++|.+ +.++.| . .....+.|+.++...
T Consensus 101 ~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~-~~i~v~-------~-~~~f~~idl~~~~~~ 170 (275)
T PF00780_consen 101 GHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG-NKICVG-------T-SKGFYLIDLNTGSPS 170 (275)
T ss_pred ccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC-CEEEEE-------e-CCceEEEecCCCCce
Confidence 1 111 44444 44589999887754444 4566666666888999984 445555 4 445778899876654
Q ss_pred EEeecC------------CCcEEEEEEc-CCeEEEEeCCCcEEEEEccCCCCc-cee---cceEEEEecCCCCEEEEecC
Q 041206 250 QTLKGH------------SDTVTSLLFW-DEYLFSSSLDETIKIWLYTHTKNN-AEL---SSLFGMLDAEAKPVLFSSGK 312 (371)
Q Consensus 250 ~~~~~~------------~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~-~~~---~~~~~~~~~~~~~~l~~~~~ 312 (371)
..+... ..++..+... +.+|++- |..-.+.|....... ..+ .....+.. ..+++++.+.
T Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~--~~pyli~~~~ 246 (275)
T PF00780_consen 171 ELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSAPQSVAY--SSPYLIAFSS 246 (275)
T ss_pred EEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcCCCCcCcccEEEcCCchhEEEE--ECCEEEEECC
Confidence 333211 1244455555 4444432 233333333221111 111 01111111 1226666665
Q ss_pred CCeEEEEEcCCcceeeeecC
Q 041206 313 DSAIRLYELPSFKLRARIFS 332 (371)
Q Consensus 313 d~~i~iwd~~~~~~~~~~~~ 332 (371)
+.|.||++.++++++.+..
T Consensus 247 -~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 247 -NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred -CEEEEEECcCCcEEEEEEC
Confidence 4599999999988877653
No 385
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.16 E-value=0.13 Score=29.22 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCC---CEEEEEeCCCcEEEEECCCC
Q 041206 97 KAVTNVGLPSGS---NKLYSGSRDGRVSVWDRDSG 128 (371)
Q Consensus 97 ~~V~~~~~~~~~---~~l~s~~~dg~v~iwd~~~~ 128 (371)
++|.++.|+|+. .+|+-+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999844 58888888899999999853
No 386
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.05 E-value=2.5 Score=38.41 Aligned_cols=149 Identities=15% Similarity=0.024 Sum_probs=76.3
Q ss_pred CeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce--eEecccceeeeeCCC--eEEEEECCCceEEEEeecCCCcEE
Q 041206 185 GVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR--WNSKEEAAVFEFCGH--TTRTWNLDNLECVQTLKGHSDTVT 260 (371)
Q Consensus 185 g~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~~~~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~ 260 (371)
..+.++|+.++.. ..+..+.+ .-..-+|+|||+ +++. ..|| .|+++|+.+++.. .+..-.+.-.
T Consensus 218 ~~i~~~~l~~g~~--~~i~~~~g--~~~~P~fspDG~~l~f~~-------~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~ 285 (425)
T COG0823 218 PRIYYLDLNTGKR--PVILNFNG--NNGAPAFSPDGSKLAFSS-------SRDGSPDIYLMDLDGKNLP-RLTNGFGINT 285 (425)
T ss_pred ceEEEEeccCCcc--ceeeccCC--ccCCccCCCCCCEEEEEE-------CCCCCccEEEEcCCCCcce-ecccCCcccc
Confidence 4689999998843 22233333 445567999996 4555 5555 4667788776633 3432222222
Q ss_pred EEEEc--CCeEE-EEeCCCcEEEEEcc--CCCCccee----cceEEEEecCCCCEEEEecCCCe--EEEEEcCCcceeee
Q 041206 261 SLLFW--DEYLF-SSSLDETIKIWLYT--HTKNNAEL----SSLFGMLDAEAKPVLFSSGKDSA--IRLYELPSFKLRAR 329 (371)
Q Consensus 261 ~~~~~--~~~l~-s~~~dg~i~iwd~~--~~~~~~~~----~~~~~~~~~~~~~~l~~~~~d~~--i~iwd~~~~~~~~~ 329 (371)
.-.|+ +++++ +.+..|.-.||-.. ........ ......+++++..+++....+|. |.+.|+.++.....
T Consensus 286 ~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~ 365 (425)
T COG0823 286 SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRI 365 (425)
T ss_pred CccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEE
Confidence 33444 55554 55566665555533 33221110 11133355555544444433454 66777766554333
Q ss_pred ecCCceEEEEEeCCCC
Q 041206 330 IFSRREVEVDQIGPAG 345 (371)
Q Consensus 330 ~~~~~~v~~~~~s~~~ 345 (371)
+........-.|.|++
T Consensus 366 lt~~~~~e~ps~~~ng 381 (425)
T COG0823 366 LTSTYLNESPSWAPNG 381 (425)
T ss_pred ccccccCCCCCcCCCC
Confidence 3333333444566666
No 387
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.85 E-value=1.7 Score=41.25 Aligned_cols=50 Identities=6% Similarity=0.123 Sum_probs=38.3
Q ss_pred eCCCeEEEEECCCceEEEEee-cCCCcEEEEEEc----CCeEEEEeCCCcEEEEE
Q 041206 233 FCGHTTRTWNLDNLECVQTLK-GHSDTVTSLLFW----DEYLFSSSLDETIKIWL 282 (371)
Q Consensus 233 ~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~----~~~l~s~~~dg~i~iwd 282 (371)
+....+.|||.+.+...+.-. ...+.|.++.|. ++.+++.+..+.|.+|-
T Consensus 48 ~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 48 SSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred CCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 456689999999887654433 357789999997 57888888888888875
No 388
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.77 E-value=3 Score=37.51 Aligned_cols=188 Identities=12% Similarity=0.073 Sum_probs=115.2
Q ss_pred eEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eEecccceeeee--CCCeEEEEE
Q 041206 169 NALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEF--CGHTTRTWN 242 (371)
Q Consensus 169 ~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~--~dg~i~iwd 242 (371)
..++.++. .++....++.|.+.|.... +.............++++++++ ++.+. . .++.+.+.|
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~----~~~~~~~vG~~P~~~~~~~~~~~vYV~n------~~~~~~~vsvid 146 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATN----TVLGSIPVGLGPVGLAVDPDGKYVYVAN------AGNGNNTVSVID 146 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCccc----ceeeEeeeccCCceEEECCCCCEEEEEe------cccCCceEEEEe
Confidence 34555544 3444445688999997665 4444444333667899999884 44440 3 479999999
Q ss_pred CCCceEEEEeecCCCcEEEEEEc--CCeEEE-EeCCCcEEEEEccCCCCcc--------eecceEEEEecCCCCEEE-Ee
Q 041206 243 LDNLECVQTLKGHSDTVTSLLFW--DEYLFS-SSLDETIKIWLYTHTKNNA--------ELSSLFGMLDAEAKPVLF-SS 310 (371)
Q Consensus 243 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s-~~~dg~i~iwd~~~~~~~~--------~~~~~~~~~~~~~~~~l~-~~ 310 (371)
..+++.+.....-..+ ..+++. ++.++. -..++.|.+.|........ ....-......+++..+. +-
T Consensus 147 ~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~ 225 (381)
T COG3391 147 AATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVAN 225 (381)
T ss_pred CCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEe
Confidence 9999988876544445 778887 554444 4578899999955443221 111112223333333333 33
Q ss_pred cCC--CeEEEEEcCCcceeeeec-CCc-eEEEEEeCCCC-eEEee-CCCCcEEEEEcccccee
Q 041206 311 GKD--SAIRLYELPSFKLRARIF-SRR-EVEVDQIGPAG-LFFPG-DASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 311 ~~d--~~i~iwd~~~~~~~~~~~-~~~-~v~~~~~s~~~-~l~~~-~~dg~i~iw~~~~~~~~ 367 (371)
..+ +.+...|..++....... ... ....+..+|+| .+... +..+.+.+-|..+....
T Consensus 226 ~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~ 288 (381)
T COG3391 226 DGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVV 288 (381)
T ss_pred ccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCcee
Confidence 333 588888988877666522 222 56778999999 44444 44578888887765443
No 389
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.76 E-value=2.1 Score=38.66 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=40.4
Q ss_pred CCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEcc
Q 041206 304 KPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 304 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~ 362 (371)
..++.+-+.||.+.+|+-+.......+..---...+.|.|.. .|++++.+..+.-|+..
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence 347888899999999987775544433332222336677766 88888888888888764
No 390
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.72 E-value=3.4 Score=39.43 Aligned_cols=152 Identities=11% Similarity=0.025 Sum_probs=73.4
Q ss_pred CeEEEEEcCCCCEEEEEeCC-CcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC
Q 041206 98 AVTNVGLPSGSNKLYSGSRD-GRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND 176 (371)
Q Consensus 98 ~V~~~~~~~~~~~l~s~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~ 176 (371)
..+.-.|+|+|+.|++.+.. ..+++.+-.....+..+.... +..+. ...+.|..+.|+|+
T Consensus 398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~-----------------ge~~~--~~~g~Issl~wSpD 458 (591)
T PRK13616 398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDA-----------------SAVAS--RVPGPISELQLSRD 458 (591)
T ss_pred CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccC-----------------chhhh--ccCCCcCeEEECCC
Confidence 37888999999988887643 223333321111111111100 00000 01345899999998
Q ss_pred --EEEEEeCCCeEEEE---eccCCCCcceeeEEEec-Cc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCC-ceE
Q 041206 177 --LLFAGSEGGVISVW---KGTFVANPFKQVASIRA-PL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDN-LEC 248 (371)
Q Consensus 177 --~l~~~~~dg~v~iw---d~~~~~~~~~~~~~~~~-~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~-~~~ 248 (371)
.++... ++.|.+= ....+.........+.. .. .+.++.|.+++.|+.+ ..++...+|.+.- |..
T Consensus 459 G~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~-------~~~~~~~v~~v~vDG~~ 530 (591)
T PRK13616 459 GVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVG-------RSDPEHPVWYVNLDGSN 530 (591)
T ss_pred CCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEE-------ecCCCCceEEEecCCcc
Confidence 444433 4777773 32333110111112222 22 4688999999987666 5544444444321 222
Q ss_pred EEEeec--CCCcEEEEEEcCCeEEEEeCCC
Q 041206 249 VQTLKG--HSDTVTSLLFWDEYLFSSSLDE 276 (371)
Q Consensus 249 ~~~~~~--~~~~v~~~~~~~~~l~s~~~dg 276 (371)
...+.. ...++.+++-.+..++....++
T Consensus 531 ~~~~~~~n~~~~v~~vaa~~~~iyv~~~~g 560 (591)
T PRK13616 531 SDALPSRNLSAPVVAVAASPSTVYVTDARA 560 (591)
T ss_pred ccccCCCCccCceEEEecCCceEEEEcCCc
Confidence 122222 2445666655544455555555
No 391
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.70 E-value=1.2 Score=32.69 Aligned_cols=96 Identities=15% Similarity=0.160 Sum_probs=67.0
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECC--------CCceEEEEeCCCeeEEEee-------cCCEEEEecCCcEEEEEeC
Q 041206 100 TNVGLPSGSNKLYSGSRDGRVSVWDRD--------SGRCVNVITNGAEIGCLIS-------EGSWVFLGLPNAVKSWRVN 164 (371)
Q Consensus 100 ~~~~~~~~~~~l~s~~~dg~v~iwd~~--------~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~ 164 (371)
..-.|......|+.++.-|+|.|++.. ....+..++....+.++.. ....|+.++...+..||++
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~ 81 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVE 81 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcc
Confidence 345677777789999999999999865 3345677778888888853 3568888999999999998
Q ss_pred CC----------CeeEEEEe-----CCEEEEEeCCCeEEEEeccCC
Q 041206 165 AA----------SVNALVVN-----NDLLFAGSEGGVISVWKGTFV 195 (371)
Q Consensus 165 ~~----------~v~~~~~~-----~~~l~~~~~dg~v~iwd~~~~ 195 (371)
.. .|+++.+- +.-++..+.+..|.-||.+..
T Consensus 82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN 127 (136)
T ss_pred cCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence 76 56666652 223333334456666665554
No 392
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.01 E-value=3.7 Score=35.52 Aligned_cols=91 Identities=14% Similarity=0.034 Sum_probs=59.5
Q ss_pred eeEEEEeCC---EEEEEeCCCeEEEEeccC--CCCcce-eeEEEecCc-ceEEEEecCCceeE-ecccceeeeeCCC-eE
Q 041206 168 VNALVVNND---LLFAGSEGGVISVWKGTF--VANPFK-QVASIRAPL-WFCSLSSSNDTRWN-SKEEAAVFEFCGH-TT 238 (371)
Q Consensus 168 v~~~~~~~~---~l~~~~~dg~v~iwd~~~--~~~~~~-~~~~~~~~~-~v~~~~~~~~~~l~-~~~~~~~~~~~dg-~i 238 (371)
-+.|+|+|+ ++++=+..+.|.-|++.. +....+ ....+.... ..-.++...+|.+. ++ ..+| .|
T Consensus 165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a-------~~~g~~v 237 (307)
T COG3386 165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAA-------VWGGGRV 237 (307)
T ss_pred cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEec-------ccCCceE
Confidence 578899998 444445568888887752 111111 122222223 55667777788755 44 3443 99
Q ss_pred EEEECCCceEEEEeecCCCcEEEEEEcC
Q 041206 239 RTWNLDNLECVQTLKGHSDTVTSLLFWD 266 (371)
Q Consensus 239 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 266 (371)
.+|+.. ++++..+..+...+++++|-+
T Consensus 238 ~~~~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 238 VRFNPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred EEECCC-CcEEEEEECCCCCCccceEeC
Confidence 999999 899988887778888999973
No 393
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.00 E-value=7 Score=38.67 Aligned_cols=139 Identities=14% Similarity=0.179 Sum_probs=90.3
Q ss_pred CeEEEEEcCC-CCEEEEEe----------CCCcEEEEECCCCceE---EEEeCCCeeEEEeecCCEEEEecCCcEEEEEe
Q 041206 98 AVTNVGLPSG-SNKLYSGS----------RDGRVSVWDRDSGRCV---NVITNGAEIGCLISEGSWVFLGLPNAVKSWRV 163 (371)
Q Consensus 98 ~V~~~~~~~~-~~~l~s~~----------~dg~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 163 (371)
.|.++.|..| +.+++.|. ..|.|.++....++.+ ......+.+.++.--+..++++-...|++|++
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~In~~vrLye~ 855 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGINQSVRLYEW 855 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEecCcEEEEEEc
Confidence 3555568776 66777764 2477888887774333 33333555666665566677778888999988
Q ss_pred CCC-----------CeeEE--EEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccce
Q 041206 164 NAA-----------SVNAL--VVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAA 229 (371)
Q Consensus 164 ~~~-----------~v~~~--~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~ 229 (371)
.+. ++..+ ....+.+++|..-+.+.+...+..+..+..+..- .+. +.+++.+-.+..++.+
T Consensus 856 t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD-~~p~Wmtaveil~~d~ylga---- 930 (1096)
T KOG1897|consen 856 TTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARD-YNPNWMTAVEILDDDTYLGA---- 930 (1096)
T ss_pred cccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehh-hCccceeeEEEecCceEEee----
Confidence 766 34444 4455699999888888877666553322222222 233 8888888887777777
Q ss_pred eeeeCCCeEEEEECC
Q 041206 230 VFEFCGHTTRTWNLD 244 (371)
Q Consensus 230 ~~~~~dg~i~iwd~~ 244 (371)
..+|.+++....
T Consensus 931 ---e~~gNlf~v~~d 942 (1096)
T KOG1897|consen 931 ---ENSGNLFTVRKD 942 (1096)
T ss_pred ---cccccEEEEEec
Confidence 788888776554
No 394
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.82 E-value=4 Score=35.29 Aligned_cols=142 Identities=12% Similarity=-0.018 Sum_probs=79.6
Q ss_pred ceEEEEecCCceeEecccc-----eeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEE-eCCCcEEEE
Q 041206 210 WFCSLSSSNDTRWNSKEEA-----AVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSS-SLDETIKIW 281 (371)
Q Consensus 210 ~v~~~~~~~~~~l~~~~~~-----~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~i~iw 281 (371)
..+.+.+.|+|.+..+... ....-.-|.++.+|. .+..++.+..+-..-+.|+|+ ++.|+.+ +..+.|.-|
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~ 190 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRY 190 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEE
Confidence 6678889999987666211 111112244555554 456666666666666789999 4455444 445778888
Q ss_pred EccC--CCCcceecce---------EEEEecCCCCEEEEecCCC-eEEEEEcCCcceeeeecCC-ceEEEEEeCC-CC--
Q 041206 282 LYTH--TKNNAELSSL---------FGMLDAEAKPVLFSSGKDS-AIRLYELPSFKLRARIFSR-REVEVDQIGP-AG-- 345 (371)
Q Consensus 282 d~~~--~~~~~~~~~~---------~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~-~~-- 345 (371)
++.. .........+ -.+....++.+-+++..+| .|..|+.. ++++.++.-. ..+++++|-- +.
T Consensus 191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~ 269 (307)
T COG3386 191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNT 269 (307)
T ss_pred ecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCE
Confidence 7653 1111110000 0111122332333444443 89999998 8888887754 7788888854 44
Q ss_pred eEEeeCCC
Q 041206 346 LFFPGDAS 353 (371)
Q Consensus 346 ~l~~~~~d 353 (371)
+++|....
T Consensus 270 L~iTs~~~ 277 (307)
T COG3386 270 LYITSARS 277 (307)
T ss_pred EEEEecCC
Confidence 55555444
No 395
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.49 E-value=7.3 Score=37.23 Aligned_cols=87 Identities=15% Similarity=0.093 Sum_probs=48.2
Q ss_pred CCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEE---EECCCceE-E---EEee-
Q 041206 184 GGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRT---WNLDNLEC-V---QTLK- 253 (371)
Q Consensus 184 dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~i---wd~~~~~~-~---~~~~- 253 (371)
.+.+.+.++..+ +... ... .|..+.|+|||. ++.. . ++.|++ -....|+. + ..+.
T Consensus 429 ~gql~~~~vd~g----e~~~---~~~g~Issl~wSpDG~RiA~i-------~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~ 493 (591)
T PRK13616 429 TGQLARTPVDAS----AVAS---RVPGPISELQLSRDGVRAAMI-------I-GGKVYLAVVEQTEDGQYALTNPREVGP 493 (591)
T ss_pred CceEEEEeccCc----hhhh---ccCCCcCeEEECCCCCEEEEE-------E-CCEEEEEEEEeCCCCceeecccEEeec
Confidence 345555566554 2222 223 799999999996 4433 2 456666 44334431 1 1122
Q ss_pred cCCCcEEEEEEc-CCeEEEEeCCCcEEEEEccC
Q 041206 254 GHSDTVTSLLFW-DEYLFSSSLDETIKIWLYTH 285 (371)
Q Consensus 254 ~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~ 285 (371)
.-...+.++.|. +..|+.+..++.-.+|.+..
T Consensus 494 ~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~v 526 (591)
T PRK13616 494 GLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNL 526 (591)
T ss_pred ccCCccccceEecCCEEEEEecCCCCceEEEec
Confidence 223346788898 55566666666666666443
No 396
>PHA03098 kelch-like protein; Provisional
Probab=93.47 E-value=5.8 Score=37.54 Aligned_cols=127 Identities=9% Similarity=0.066 Sum_probs=60.3
Q ss_pred CeEEEEECCCceEEE--EeecCCCcEEEEEEcCCeEEEEeCC------CcEEEEEccCCCC------cceecceEEEEec
Q 041206 236 HTTRTWNLDNLECVQ--TLKGHSDTVTSLLFWDEYLFSSSLD------ETIKIWLYTHTKN------NAELSSLFGMLDA 301 (371)
Q Consensus 236 g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~------~~~~~~~~~~~~~ 301 (371)
..+..||..+++-.. .+.........+...+...+.|+.+ ..+..||..+.+= ........ +...
T Consensus 358 ~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~-~~~~ 436 (534)
T PHA03098 358 NTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGC-AIYH 436 (534)
T ss_pred ceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCce-EEEE
Confidence 457788887755332 1211111222233346666666632 3578888654321 11111111 1222
Q ss_pred CCCCEEEEecCC--------CeEEEEEcCCcce--eeeecC-CceEEEEEeCCCC-eEEeeCCC-----CcEEEEEcccc
Q 041206 302 EAKPVLFSSGKD--------SAIRLYELPSFKL--RARIFS-RREVEVDQIGPAG-LFFPGDAS-----GSVGVWKWLLA 364 (371)
Q Consensus 302 ~~~~~l~~~~~d--------~~i~iwd~~~~~~--~~~~~~-~~~v~~~~~s~~~-~l~~~~~d-----g~i~iw~~~~~ 364 (371)
+ +.+++.|+.+ ..+.+||+.+.+- +..... ......+.+ ++ .++.|+.+ ..+.+||..+.
T Consensus 437 ~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 437 D-GKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred C-CEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 3 3356666542 2388899876542 222211 111122222 55 66666654 46888888765
Q ss_pred ce
Q 041206 365 EQ 366 (371)
Q Consensus 365 ~~ 366 (371)
+-
T Consensus 514 ~W 515 (534)
T PHA03098 514 TW 515 (534)
T ss_pred EE
Confidence 43
No 397
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.46 E-value=2.4 Score=37.94 Aligned_cols=100 Identities=8% Similarity=0.021 Sum_probs=66.9
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEe
Q 041206 95 HKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVN 174 (371)
Q Consensus 95 h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~ 174 (371)
-+++|.++.||+|.+.||.--.|.+|.+++....+.......... ..+..|..+.|.
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck-----------------------~k~~~IlGF~W~ 121 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECK-----------------------TKNANILGFCWT 121 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhc-----------------------cCcceeEEEEEe
Confidence 456999999999999999999999999999854443332222111 122348888888
Q ss_pred CC-EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce
Q 041206 175 ND-LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR 221 (371)
Q Consensus 175 ~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 221 (371)
.+ .++..+..| +-+|.+.... ..++..+.++ .|+=..|.++..
T Consensus 122 ~s~e~A~i~~~G-~e~y~v~pek---rslRlVks~~~nvnWy~yc~et~ 166 (657)
T KOG2377|consen 122 SSTEIAFITDQG-IEFYQVLPEK---RSLRLVKSHNLNVNWYMYCPETA 166 (657)
T ss_pred cCeeEEEEecCC-eEEEEEchhh---hhhhhhhhcccCccEEEEccccc
Confidence 77 555555443 5666554432 3445556666 788888888775
No 398
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.38 E-value=4.3 Score=34.26 Aligned_cols=183 Identities=8% Similarity=0.143 Sum_probs=116.7
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eEEEEeCCCeeEEEeecCCEEEEec-CCcEEEEEeCCC----
Q 041206 95 HKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGR---CVNVITNGAEIGCLISEGSWVFLGL-PNAVKSWRVNAA---- 166 (371)
Q Consensus 95 h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~---- 166 (371)
-.+-+..+.++ +++...+..+.-++|.|+.+.. .+..++...--.++.-.+++.+++. +....++|+.+.
T Consensus 85 ~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 85 ARDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCce
Confidence 34567777887 4577777777779999998654 3333444444556666788877754 777777776543
Q ss_pred ----------CeeEEEEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCceeEecccceeeeeCCC
Q 041206 167 ----------SVNALVVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGH 236 (371)
Q Consensus 167 ----------~v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~dg 236 (371)
.-..++++.++...+..|+-+.+-|+..+..+ ..+........+.++..+++--+++- . +.
T Consensus 163 lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sP-vli~~~n~g~g~~sv~vsdnr~y~vv-------y-~e 233 (370)
T COG5276 163 LAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSP-VLIGSYNTGPGTYSVSVSDNRAYLVV-------Y-DE 233 (370)
T ss_pred eeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCC-eEEEEEecCCceEEEEecCCeeEEEE-------c-cc
Confidence 44678888888888899999999999887532 22333322226777777775444443 3 44
Q ss_pred eEEEEECCCceEEEEee--cCCC--cEEEEEEcCCeEEEEeCCCcEEEEEccCCCC
Q 041206 237 TTRTWNLDNLECVQTLK--GHSD--TVTSLLFWDEYLFSSSLDETIKIWLYTHTKN 288 (371)
Q Consensus 237 ~i~iwd~~~~~~~~~~~--~~~~--~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 288 (371)
-+.+-|..+.+....+. .... .++.+..++++......+.-+.+-|+..+..
T Consensus 234 gvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~s 289 (370)
T COG5276 234 GVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPS 289 (370)
T ss_pred ceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCC
Confidence 46677776655333332 1122 2334566688887777777777777766554
No 399
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.34 E-value=6.8 Score=37.34 Aligned_cols=178 Identities=11% Similarity=0.116 Sum_probs=95.5
Q ss_pred EEEEEeCC------CeEEEEeccCCCCcceeeEEEecCcceEEEEecCCceeEecccceeeeeCC------CeEEEEECC
Q 041206 177 LLFAGSEG------GVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCG------HTTRTWNLD 244 (371)
Q Consensus 177 ~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~d------g~i~iwd~~ 244 (371)
.+++|+.+ ..+..||..+.. +.....+.....-.++++..+-.+++| +.+ .++..||.+
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~--w~~~a~m~~~r~~~~~~~~~~~lYv~G-------G~~~~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNE--WSSLAPMPSPRCRVGVAVLNGKLYVVG-------GYDSGSDRLSSVERYDPR 357 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCc--EeecCCCCcccccccEEEECCEEEEEc-------cccCCCcccceEEEecCC
Confidence 66777766 357778877762 123333332224445555554336777 777 467789988
Q ss_pred CceEEE--EeecCCCcEEEEEEcCCeEEEEeCCCc-----EEEEEccCCCC-----cceecceEEEEecCCCCEEEEecC
Q 041206 245 NLECVQ--TLKGHSDTVTSLLFWDEYLFSSSLDET-----IKIWLYTHTKN-----NAELSSLFGMLDAEAKPVLFSSGK 312 (371)
Q Consensus 245 ~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~ 312 (371)
+++-.. .+.............+...+.|+.||. +..||....+= ......-.++... ++.+.++|+.
T Consensus 358 ~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~-~g~iYi~GG~ 436 (571)
T KOG4441|consen 358 TNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL-GGKLYIIGGG 436 (571)
T ss_pred CCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE-CCEEEEEcCc
Confidence 766432 222222333333444778888888874 77777655441 1111111222223 3436677774
Q ss_pred C------CeEEEEEcCCcc--eeeeecCCceEEEEEeCCCC-eEEeeCCCCc-----EEEEEccccc
Q 041206 313 D------SAIRLYELPSFK--LRARIFSRREVEVDQIGPAG-LFFPGDASGS-----VGVWKWLLAE 365 (371)
Q Consensus 313 d------~~i~iwd~~~~~--~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~-----i~iw~~~~~~ 365 (371)
+ ..+..||..+.+ .+........-..++.- ++ +.+.|+.|+. |..||..+.+
T Consensus 437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred CCCccccceEEEEcCCCCceeecCCcccccccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCc
Confidence 4 357888887754 23232222222223332 45 7888887763 6667766554
No 400
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.34 E-value=3 Score=39.82 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 041206 97 KAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGR 129 (371)
Q Consensus 97 ~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 129 (371)
.-++++.-+|.++.+++++.||+|++|+.....
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence 456788888999999999999999999976443
No 401
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=93.29 E-value=5.6 Score=35.32 Aligned_cols=126 Identities=13% Similarity=0.134 Sum_probs=61.3
Q ss_pred eEEEEECCCceEEE-E-e---ecCCCcEEEEEEc--CCeEEEEeC--CC---cEEEEEccCCCCc--------ceecce-
Q 041206 237 TTRTWNLDNLECVQ-T-L---KGHSDTVTSLLFW--DEYLFSSSL--DE---TIKIWLYTHTKNN--------AELSSL- 295 (371)
Q Consensus 237 ~i~iwd~~~~~~~~-~-~---~~~~~~v~~~~~~--~~~l~s~~~--dg---~i~iwd~~~~~~~--------~~~~~~- 295 (371)
.+.++|+.+++... . . ..-...+..+.|. ++.|+..-. +. .+.+.|..+.... ..+...
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 45668888776531 1 1 2234567778886 332433322 21 3555565443321 111111
Q ss_pred EEEEe-cCCCCEEEEecCCCe--EEEEEcCCcceeeeecCCceEEE-EEeCCCC--eEEeeCCC--CcEEEEEcc
Q 041206 296 FGMLD-AEAKPVLFSSGKDSA--IRLYELPSFKLRARIFSRREVEV-DQIGPAG--LFFPGDAS--GSVGVWKWL 362 (371)
Q Consensus 296 ~~~~~-~~~~~~l~~~~~d~~--i~iwd~~~~~~~~~~~~~~~v~~-~~~s~~~--~l~~~~~d--g~i~iw~~~ 362 (371)
...+. +++..++.....+|. |.+++...+....-..+.-.|.. +.+++++ ..+++..+ +.-.+|.+.
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence 11233 455556666667775 44556665554433334556744 6778876 44455542 344555543
No 402
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.18 E-value=7.2 Score=37.66 Aligned_cols=164 Identities=10% Similarity=0.145 Sum_probs=90.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEe---C-CEEEEEeC
Q 041206 108 SNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVN---N-DLLFAGSE 183 (371)
Q Consensus 108 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~---~-~~l~~~~~ 183 (371)
.++|+.|. .+.|.||+.+.-..... ..+...+...... ....++.+..|. ....|+-|... . +.|+.+..
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~---~~p~~~~~t~p~~-~~~~D~~~s~~p-~PHtIN~i~v~~lg~~EVLl~c~D 122 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPS---RKPCLRFDTKPEF-TSTPDRLISTWP-FPHTINFIKVGDLGGEEVLLLCTD 122 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccc---cccccccccCccc-cccccccccCCC-CCceeeEEEecccCCeeEEEEEec
Confidence 66777765 67899999875433211 0111111100000 011222233332 22345555432 2 28999999
Q ss_pred CCeEEEEeccCCC----------------CcceeeEEEecCcceEEEEec--CCce-eEecccceeeeeCCCeEEEEECC
Q 041206 184 GGVISVWKGTFVA----------------NPFKQVASIRAPLWFCSLSSS--NDTR-WNSKEEAAVFEFCGHTTRTWNLD 244 (371)
Q Consensus 184 dg~v~iwd~~~~~----------------~~~~~~~~~~~~~~v~~~~~~--~~~~-l~~~~~~~~~~~~dg~i~iwd~~ 244 (371)
||.|.+|..+.-. ...++...+.....+.+++++ ...+ +|++ +....|.||-..
T Consensus 123 dG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVS-------sNs~~VTVFaf~ 195 (717)
T PF08728_consen 123 DGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVS-------SNSQEVTVFAFA 195 (717)
T ss_pred CCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEe-------cCCceEEEEEEe
Confidence 9999999653210 001233334444478889988 5555 6666 777777776554
Q ss_pred Cc--eEE-EEeecCCCcEEEEEEc-----CC---eEEEEeCCCcEEEEEcc
Q 041206 245 NL--ECV-QTLKGHSDTVTSLLFW-----DE---YLFSSSLDETIKIWLYT 284 (371)
Q Consensus 245 ~~--~~~-~~~~~~~~~v~~~~~~-----~~---~l~s~~~dg~i~iwd~~ 284 (371)
.. +.. ..-..|...|.+|+|. +. .+++++-.|.+.+|++.
T Consensus 196 l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 196 LVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred ccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 31 111 1111256678899996 22 78889999999999884
No 403
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.09 E-value=0.78 Score=37.50 Aligned_cols=74 Identities=18% Similarity=0.127 Sum_probs=47.0
Q ss_pred eeEEEEeCCEEEEEeCCCeEEEEeccCCCCcceee--EE-Ee-------cCc-ceEEEEecCCceeEecccceeeeeCCC
Q 041206 168 VNALVVNNDLLFAGSEGGVISVWKGTFVANPFKQV--AS-IR-------APL-WFCSLSSSNDTRWNSKEEAAVFEFCGH 236 (371)
Q Consensus 168 v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~-~~-------~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg 236 (371)
+..+....+++++.+.+|.+++||+.+.+...+.. .. +. ... .|..+.++.+|..+.. -.+|
T Consensus 15 ~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~-------lsng 87 (219)
T PF07569_consen 15 VSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT-------LSNG 87 (219)
T ss_pred eEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE-------EeCC
Confidence 45566666688889999999999998874321110 00 11 223 7788888877763333 4467
Q ss_pred eEEEEECCCceE
Q 041206 237 TTRTWNLDNLEC 248 (371)
Q Consensus 237 ~i~iwd~~~~~~ 248 (371)
..+.|+..-+.-
T Consensus 88 ~~y~y~~~L~~W 99 (219)
T PF07569_consen 88 DSYSYSPDLGCW 99 (219)
T ss_pred CEEEecccccee
Confidence 888888764433
No 404
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.02 E-value=7 Score=35.65 Aligned_cols=166 Identities=17% Similarity=0.155 Sum_probs=84.9
Q ss_pred ccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEE-eCCCc-
Q 041206 42 GFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSG-SRDGR- 119 (371)
Q Consensus 42 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~-~~dg~- 119 (371)
...+..-++++....+.-..+.......+..++. .......+..+.++.. .-+|+|||++|+-+ ..||.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l------~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~ 262 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDL------NTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSP 262 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEec------cCCccceeeccCCccC---CccCCCCCCEEEEEECCCCCc
Confidence 3344444555555544333333333334444442 1223344555666655 34799999887654 46665
Q ss_pred -EEEEECCCCceEEEEeCCCe---eEEEeecCCEEEEecC----CcEEEEEeCCCCeeEEEE----------eCC--EEE
Q 041206 120 -VSVWDRDSGRCVNVITNGAE---IGCLISEGSWVFLGLP----NAVKSWRVNAASVNALVV----------NND--LLF 179 (371)
Q Consensus 120 -v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~i~~~~~~~~~v~~~~~----------~~~--~l~ 179 (371)
|.+.|+.+++..+ +..... --.+.++++.++-.+| -.|.+++...+.+..+.+ +|+ +++
T Consensus 263 ~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~ 341 (425)
T COG0823 263 DIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIV 341 (425)
T ss_pred cEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEE
Confidence 5556777666333 443322 2244567877765433 256777777776665554 344 344
Q ss_pred EEeC-CCe--EEEEeccCCCCcceeeEEEecCcceEEEEecCCce
Q 041206 180 AGSE-GGV--ISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR 221 (371)
Q Consensus 180 ~~~~-dg~--v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 221 (371)
..+. +|. |.+.|+.++. ..+.+........-.+.++++
T Consensus 342 ~~~~~~g~~~i~~~~~~~~~----~~~~lt~~~~~e~ps~~~ng~ 382 (425)
T COG0823 342 FESSSGGQWDIDKNDLASGG----KIRILTSTYLNESPSWAPNGR 382 (425)
T ss_pred EEeccCCceeeEEeccCCCC----cEEEccccccCCCCCcCCCCc
Confidence 3332 344 5555555542 122222222444555666665
No 405
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.92 E-value=4 Score=32.60 Aligned_cols=153 Identities=14% Similarity=0.025 Sum_probs=83.8
Q ss_pred CeEEEEeccCCCCcceeeEEEecCc-ce--EEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEE
Q 041206 185 GVISVWKGTFVANPFKQVASIRAPL-WF--CSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTS 261 (371)
Q Consensus 185 g~v~iwd~~~~~~~~~~~~~~~~~~-~v--~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 261 (371)
..|++||+.++ +.+..-.-.. .+ ..+.-..|....-. -.+|....+|.++.+++.++. ..+.=..
T Consensus 68 S~ir~~~L~~g----q~~~s~~l~~~~~FgEGit~~gd~~y~LT-------w~egvaf~~d~~t~~~lg~~~-y~GeGWg 135 (262)
T COG3823 68 SKIRVSDLTTG----QEIFSEKLAPDTVFGEGITKLGDYFYQLT-------WKEGVAFKYDADTLEELGRFS-YEGEGWG 135 (262)
T ss_pred ceeEEEeccCc----eEEEEeecCCccccccceeeccceEEEEE-------eccceeEEEChHHhhhhcccc-cCCccee
Confidence 46889999887 3333222211 11 11222222222333 678899999999988887766 3555677
Q ss_pred EEEcCCeEEEEeCCCcEEEEEccCCCCc---------ceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-
Q 041206 262 LLFWDEYLFSSSLDETIKIWLYTHTKNN---------AELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF- 331 (371)
Q Consensus 262 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~- 331 (371)
++..+..|+.+....+++.-|.+.-... .++..+.-+-+-++. +.+-.=....|...|..+++.+.-+.
T Consensus 136 Lt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~-lyANVw~t~~I~rI~p~sGrV~~widl 214 (262)
T COG3823 136 LTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGE-LYANVWQTTRIARIDPDSGRVVAWIDL 214 (262)
T ss_pred eecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccE-EEEeeeeecceEEEcCCCCcEEEEEEc
Confidence 7777666666666666776664332221 122222223333333 33322233445555666665544332
Q ss_pred ------------CCceEEEEEeCCCC--eEEee
Q 041206 332 ------------SRREVEVDQIGPAG--LFFPG 350 (371)
Q Consensus 332 ------------~~~~v~~~~~s~~~--~l~~~ 350 (371)
+..-.+.+++.|++ +++||
T Consensus 215 S~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 215 SGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cCCchhcCccccccccccceeecCcCCeEEEec
Confidence 13467899999988 66665
No 406
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.66 E-value=0.81 Score=37.40 Aligned_cols=30 Identities=10% Similarity=0.047 Sum_probs=16.8
Q ss_pred CceEEEEEeCCCC-eEEeeCCCCcEEEEEccc
Q 041206 333 RREVEVDQIGPAG-LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 333 ~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~ 363 (371)
...|..+.++.+| -+++- .+|..+.|+..-
T Consensus 66 ~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~L 96 (219)
T PF07569_consen 66 SPNITSCSLTSNGVPIVTL-SNGDSYSYSPDL 96 (219)
T ss_pred CCcEEEEEEcCCCCEEEEE-eCCCEEEecccc
Confidence 3456666677666 33333 345666666543
No 407
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.59 E-value=0.46 Score=27.04 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=25.0
Q ss_pred ceEEEEEeCCCC----eEEeeCCCCcEEEEEccc
Q 041206 334 REVEVDQIGPAG----LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 334 ~~v~~~~~s~~~----~l~~~~~dg~i~iw~~~~ 363 (371)
+.++++.|||+. +|+..-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 358899999754 788888889999999985
No 408
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.08 E-value=3.4 Score=37.61 Aligned_cols=125 Identities=10% Similarity=0.066 Sum_probs=78.1
Q ss_pred eCCCeEEEEECCCceEEEEeecCCCcEEEEEEc---------CCeEEEEeCCCcEEEEEccCCCCccee---------cc
Q 041206 233 FCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW---------DEYLFSSSLDETIKIWLYTHTKNNAEL---------SS 294 (371)
Q Consensus 233 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~---------~~~l~s~~~dg~i~iwd~~~~~~~~~~---------~~ 294 (371)
.....++-.|++.|+.+..+..|... -+.|. +..-+.|-++..|.-.|.+.....-.. ..
T Consensus 487 ~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~ 564 (776)
T COG5167 487 GERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNK 564 (776)
T ss_pred CCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccccc
Confidence 77788888999999999999877765 34454 223344545555555565443321111 11
Q ss_pred eEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecC-CceEEEEEeCCCC--eEEeeCCCCcEEEEEcc
Q 041206 295 LFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFS-RREVEVDQIGPAG--LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 295 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~--~l~~~~~dg~i~iw~~~ 362 (371)
..+......+ ++++++..|.|++||.-..+-...+.. ...|..+..+.+| .|+|| ...+.+-|+.
T Consensus 565 Fss~~tTesG-yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~ 632 (776)
T COG5167 565 FSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVP 632 (776)
T ss_pred ccccccccCc-eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEecc
Confidence 1112223334 899999999999999765444434443 6788999999999 55554 3356665654
No 409
>PHA03098 kelch-like protein; Provisional
Probab=92.05 E-value=11 Score=35.66 Aligned_cols=88 Identities=9% Similarity=0.048 Sum_probs=41.7
Q ss_pred CeEEEEECCCceEEE--EeecCCCcEEEEEEcCCeEEEEeCCC--------cEEEEEccCCCC------cceecceEEEE
Q 041206 236 HTTRTWNLDNLECVQ--TLKGHSDTVTSLLFWDEYLFSSSLDE--------TIKIWLYTHTKN------NAELSSLFGML 299 (371)
Q Consensus 236 g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~dg--------~i~iwd~~~~~~------~~~~~~~~~~~ 299 (371)
..+..||+.+.+-.. .+.........+...+...+.|+.+. .+.+||..+.+= ........ ..
T Consensus 406 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~-~~ 484 (534)
T PHA03098 406 KTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINAS-LC 484 (534)
T ss_pred ceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccce-EE
Confidence 468889988755432 11111111222333355556665432 377888654331 00111111 11
Q ss_pred ecCCCCEEEEecCC-----CeEEEEEcCCcc
Q 041206 300 DAEAKPVLFSSGKD-----SAIRLYELPSFK 325 (371)
Q Consensus 300 ~~~~~~~l~~~~~d-----~~i~iwd~~~~~ 325 (371)
.. ++.+++.|+.+ +.+.+||+.+.+
T Consensus 485 ~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 485 IF-NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EE-CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 22 33366666643 467888877643
No 410
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.90 E-value=3.4 Score=37.25 Aligned_cols=51 Identities=20% Similarity=0.179 Sum_probs=43.2
Q ss_pred ceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC
Q 041206 86 LATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN 136 (371)
Q Consensus 86 ~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 136 (371)
......|......+.++..+|++++.|+...=|.|.++|+.++..++..+.
T Consensus 297 l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKG 347 (415)
T PF14655_consen 297 LPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKG 347 (415)
T ss_pred cceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhcc
Confidence 345566777778899999999999999988889999999999988887775
No 411
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=91.86 E-value=9.4 Score=34.43 Aligned_cols=188 Identities=11% Similarity=-0.009 Sum_probs=84.2
Q ss_pred EEEEEe-CCCeEEEEeccCCCCcceeeEEEecCc--------ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCc
Q 041206 177 LLFAGS-EGGVISVWKGTFVANPFKQVASIRAPL--------WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNL 246 (371)
Q Consensus 177 ~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~ 246 (371)
+|++.+ ..+.|+|+|+.+.....+..+.+.... ....+-.-|+|. ++++-.. ..+..-|.+.+.|-++.
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd-~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGD-ADGNGPGGFVLLDGETF 167 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEE-TTS-S--EEEEE-TTT-
T ss_pred cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccC-CCCCCCCcEEEEcCccc
Confidence 566655 678999999997665556666666411 223344456775 4443000 00033356788888887
Q ss_pred eEEEEeecCCC---cEEEEEEc--CCeEEEEe--------------------CCCcEEEEEccCCCCccee---------
Q 041206 247 ECVQTLKGHSD---TVTSLLFW--DEYLFSSS--------------------LDETIKIWLYTHTKNNAEL--------- 292 (371)
Q Consensus 247 ~~~~~~~~~~~---~v~~~~~~--~~~l~s~~--------------------~dg~i~iwd~~~~~~~~~~--------- 292 (371)
+....+..... .-+..-|. .+.++|+. ...++.+||+...+....+
T Consensus 168 ~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~p 247 (461)
T PF05694_consen 168 EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMP 247 (461)
T ss_dssp -EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEE
T ss_pred cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCce
Confidence 77766653222 12233333 34555543 2467999998887753222
Q ss_pred cceEEEEecCCCCEEEEecCCCeEEEEEc-CCcc----eeeeecC------------------CceEEEEEeCCCC--eE
Q 041206 293 SSLFGMLDAEAKPVLFSSGKDSAIRLYEL-PSFK----LRARIFS------------------RREVEVDQIGPAG--LF 347 (371)
Q Consensus 293 ~~~~~~~~~~~~~~l~~~~~d~~i~iwd~-~~~~----~~~~~~~------------------~~~v~~~~~s~~~--~l 347 (371)
-.+..+..+....-++.+.-.++|..|-. ..++ .+..+.. ..-|+.+.+|.|. +.
T Consensus 248 LEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLY 327 (461)
T PF05694_consen 248 LEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLY 327 (461)
T ss_dssp EEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEE
T ss_pred EEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEE
Confidence 23444444444433444444445554433 3332 2222211 2347899999998 66
Q ss_pred EeeCCCCcEEEEEccccc
Q 041206 348 FPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 348 ~~~~~dg~i~iw~~~~~~ 365 (371)
+++-.+|.|+.||+....
T Consensus 328 vs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 328 VSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp EEETTTTEEEEEE-SSTT
T ss_pred EEcccCCcEEEEecCCCC
Confidence 777789999999998753
No 412
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.81 E-value=7.6 Score=37.98 Aligned_cols=72 Identities=11% Similarity=0.044 Sum_probs=43.6
Q ss_pred ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCC----------ceE--E-EEe--------ecCCCcEEEEEEc--
Q 041206 210 WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDN----------LEC--V-QTL--------KGHSDTVTSLLFW-- 265 (371)
Q Consensus 210 ~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~----------~~~--~-~~~--------~~~~~~v~~~~~~-- 265 (371)
.|..+.++|+|. ++.. +. ..|.|..+.. ++. . +++ ..+...|..+.|+
T Consensus 86 ~v~~i~~n~~g~~lal~-------G~-~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~ 157 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALV-------GP-RGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPW 157 (717)
T ss_pred eEEEEEECCCCCEEEEE-------cC-CcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCC
Confidence 899999999997 4433 33 3344444321 111 0 111 1234577788887
Q ss_pred ---CCeEEEEeCCCcEEEEEccCCCCc
Q 041206 266 ---DEYLFSSSLDETIKIWLYTHTKNN 289 (371)
Q Consensus 266 ---~~~l~s~~~dg~i~iwd~~~~~~~ 289 (371)
+..|+.-..|+++|+||+....+.
T Consensus 158 s~~~~~l~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 158 SESDSHLVVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred CCCCCeEEEEecCCEEEEEecCCCCCC
Confidence 357888888888888888654443
No 413
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.65 E-value=2.7 Score=42.07 Aligned_cols=135 Identities=11% Similarity=0.007 Sum_probs=83.8
Q ss_pred EEEecCc--ceEEEEecCCce---eEecccceeeeeCCCeEEEEECCCceEE-----EEeecC------CCcEEEEEEc-
Q 041206 203 ASIRAPL--WFCSLSSSNDTR---WNSKEEAAVFEFCGHTTRTWNLDNLECV-----QTLKGH------SDTVTSLLFW- 265 (371)
Q Consensus 203 ~~~~~~~--~v~~~~~~~~~~---l~~~~~~~~~~~~dg~i~iwd~~~~~~~-----~~~~~~------~~~v~~~~~~- 265 (371)
..++.+. ++..+...+|+. ++.. +.+-.|..||+++...- .-|..| .....++.|+
T Consensus 93 ~t~~v~k~~pi~~~v~~~D~t~s~v~~t-------sng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP 165 (1405)
T KOG3630|consen 93 LTFKVEKEIPIVIFVCFHDATDSVVVST-------SNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNP 165 (1405)
T ss_pred cceeeeccccceEEEeccCCceEEEEEe-------cCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccC
Confidence 3444454 777777788764 3333 55668899999863221 111111 2344566777
Q ss_pred --CCeEEEEeCCCcEEEEEccCCCC---c-ceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-----CCc
Q 041206 266 --DEYLFSSSLDETIKIWLYTHTKN---N-AELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-----SRR 334 (371)
Q Consensus 266 --~~~l~s~~~dg~i~iwd~~~~~~---~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~ 334 (371)
+...+.+..|+.|++..+..... . ..-....++.|.+.+..++.|-.+|++.-|...-. ...++. ...
T Consensus 166 ~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~y 244 (1405)
T KOG3630|consen 166 LVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENY 244 (1405)
T ss_pred CccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCc
Confidence 45677888999999988654432 1 11123445566666669999999999999876543 222222 246
Q ss_pred eEEEEEeCCCC
Q 041206 335 EVEVDQIGPAG 345 (371)
Q Consensus 335 ~v~~~~~s~~~ 345 (371)
.|.++.|-...
T Consensus 245 rvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 245 RVLSVTWLSTQ 255 (1405)
T ss_pred ceeEEEEecce
Confidence 89999997766
No 414
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.47 E-value=7.9 Score=32.77 Aligned_cols=160 Identities=9% Similarity=0.027 Sum_probs=90.6
Q ss_pred eeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEE
Q 041206 92 LNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNAL 171 (371)
Q Consensus 92 l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~ 171 (371)
+.|-+..|.++.|+|+.+.|++......-.+|=...|+.+++++...- . ..-.+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-----~---------------------DpE~I 134 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-----S---------------------DPETI 134 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-----C---------------------ChhHe
Confidence 345556699999999999999998888888888888999999886321 0 01122
Q ss_pred EEeCC--EEEEEeCCCeEEEEeccCCCCc------ceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEE
Q 041206 172 VVNND--LLFAGSEGGVISVWKGTFVANP------FKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTW 241 (371)
Q Consensus 172 ~~~~~--~l~~~~~dg~v~iwd~~~~~~~------~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iw 241 (371)
.+..+ ++++--.++.+.++.+...... .-++......+ ....++|.|..+ |+.+ -+-.-+.||
T Consensus 135 eyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~a-------KEr~P~~I~ 207 (316)
T COG3204 135 EYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVA-------KERNPIGIF 207 (316)
T ss_pred EEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEE-------EccCCcEEE
Confidence 22222 2222222333333333222100 01122222224 788899999764 7777 677777777
Q ss_pred ECCCce-E--EEEeecCC-------CcEEEEEEc---CCeEEEEeCCCcEEEEEcc
Q 041206 242 NLDNLE-C--VQTLKGHS-------DTVTSLLFW---DEYLFSSSLDETIKIWLYT 284 (371)
Q Consensus 242 d~~~~~-~--~~~~~~~~-------~~v~~~~~~---~~~l~s~~~dg~i~iwd~~ 284 (371)
...... . +.....+. ..|.++.|+ +.+|+-+.+++.+.-.|..
T Consensus 208 ~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 208 EVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred EEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 665322 1 11111111 245667776 4566777777776666643
No 415
>PHA02790 Kelch-like protein; Provisional
Probab=91.27 E-value=13 Score=34.75 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=31.8
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCceEEEEeCCCe---eEEEeecCCEEEEec---CCcEEEEEeCCC
Q 041206 107 GSNKLYSGSRDG-----RVSVWDRDSGRCVNVITNGAE---IGCLISEGSWVFLGL---PNAVKSWRVNAA 166 (371)
Q Consensus 107 ~~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~i~~~~~~~~ 166 (371)
++..++.|+.++ ++..||..+++-....+...+ ......++.+.+.|. ...+..|+..+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n 341 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDA 341 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCC
Confidence 455667777543 466788777654333222211 222234555555543 245777887655
No 416
>PHA02790 Kelch-like protein; Provisional
Probab=91.25 E-value=13 Score=34.74 Aligned_cols=173 Identities=11% Similarity=0.023 Sum_probs=81.0
Q ss_pred EEEEEeCCC-----eEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eEecccceeeeeCC--CeEEEEECCCceE
Q 041206 177 LLFAGSEGG-----VISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFCG--HTTRTWNLDNLEC 248 (371)
Q Consensus 177 ~l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~d--g~i~iwd~~~~~~ 248 (371)
.+++|+.++ .+..||..+.. +..+..+.....-.+++. -+++ .+.| +.+ ..+..||..+++-
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~--W~~~~~m~~~r~~~~~v~-~~~~iYviG-------G~~~~~sve~ydp~~n~W 343 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNN--WIPIPPMNSPRLYASGVP-ANNKLYVVG-------GLPNPTSVERWFHGDAAW 343 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCE--EEECCCCCchhhcceEEE-ECCEEEEEC-------CcCCCCceEEEECCCCeE
Confidence 556666542 46677776641 122222222111112222 3455 4556 432 4578898876543
Q ss_pred EE--EeecCCCcEEEEEEcCCeEEEEeCCC---cEEEEEccCCCC------cceecceEEEEecCCCCEEEEecCCCeEE
Q 041206 249 VQ--TLKGHSDTVTSLLFWDEYLFSSSLDE---TIKIWLYTHTKN------NAELSSLFGMLDAEAKPVLFSSGKDSAIR 317 (371)
Q Consensus 249 ~~--~~~~~~~~v~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 317 (371)
.. .+.........+...+...+.|+.++ .+..||.+..+= ....... .+... ++.+.+.| |.+.
T Consensus 344 ~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~~~-~~~IYv~G---G~~e 418 (480)
T PHA02790 344 VNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CALVF-GRRLFLVG---RNAE 418 (480)
T ss_pred EECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEEEE-CCEEEEEC---CceE
Confidence 22 22211222233444466667777553 466787554320 1111111 11222 23355555 3467
Q ss_pred EEEcCCcc--eeeeecC-CceEEEEEeCCCC-eEEeeCCC-----CcEEEEEccccce
Q 041206 318 LYELPSFK--LRARIFS-RREVEVDQIGPAG-LFFPGDAS-----GSVGVWKWLLAEQ 366 (371)
Q Consensus 318 iwd~~~~~--~~~~~~~-~~~v~~~~~s~~~-~l~~~~~d-----g~i~iw~~~~~~~ 366 (371)
+||+.+.+ .+..+.. .... +++.. ++ ..+.|+.+ ..+..||..+++-
T Consensus 419 ~ydp~~~~W~~~~~m~~~r~~~-~~~v~-~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 419 FYCESSNTWTLIDDPIYPRDNP-ELIIV-DNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred EecCCCCcEeEcCCCCCCcccc-EEEEE-CCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 88887643 2222222 2222 22332 45 77777654 3577888876653
No 417
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.19 E-value=11 Score=38.46 Aligned_cols=216 Identities=12% Similarity=0.082 Sum_probs=97.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCe-----eEEEeecCCEEEEecCCcEEEEEeCCC-----
Q 041206 97 KAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAE-----IGCLISEGSWVFLGLPNAVKSWRVNAA----- 166 (371)
Q Consensus 97 ~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~----- 166 (371)
.....++|+|...++|.+...|.|+++-...-+.....+.... +.-+.+......-.....+.+|.....
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~ 115 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVFL 115 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceeec
Confidence 4567889999999999999999999997554333332222111 111111122222223344445544322
Q ss_pred --CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce--eEecccceeeeeCCCeEEE
Q 041206 167 --SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR--WNSKEEAAVFEFCGHTTRT 240 (371)
Q Consensus 167 --~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~i 240 (371)
.+.+....+. + +.+ ..+.+++||..-.....-....+..+..+--...++.-. .... ..+- ..
T Consensus 116 ~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-------~~~~--~~ 184 (993)
T KOG1983|consen 116 KQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVI-------DLDT--VL 184 (993)
T ss_pred CCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeecccc-------cccc--ce
Confidence 3333333333 4 455 778888887654311000111111111000000011000 0001 1111 11
Q ss_pred EECCCceEEEEeecCCCcEEEEEEc-CCeEEEEeCCCcEEEEEccCCCCcceecceEEEEecCCCCEEEEecCCCeEEEE
Q 041206 241 WNLDNLECVQTLKGHSDTVTSLLFW-DEYLFSSSLDETIKIWLYTHTKNNAELSSLFGMLDAEAKPVLFSSGKDSAIRLY 319 (371)
Q Consensus 241 wd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 319 (371)
+-+.... ..+..+..++.+..+. ..-++.+..-+.+.+|+................. ...+..++++..||.+.+|
T Consensus 185 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~h~Dgs~~fW 261 (993)
T KOG1983|consen 185 ISLPDAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE-SRDGSHFVSYHTDGSYAFW 261 (993)
T ss_pred eeccccc--ccccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccC-ccCCceEEEEEecCCEEee
Confidence 1111101 1222344555555554 4444555555666666543322211111110011 3445588999999999999
Q ss_pred EcCCcce
Q 041206 320 ELPSFKL 326 (371)
Q Consensus 320 d~~~~~~ 326 (371)
|...+..
T Consensus 262 d~s~g~~ 268 (993)
T KOG1983|consen 262 DVSSGKL 268 (993)
T ss_pred ecCCCce
Confidence 9988654
No 418
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.09 E-value=4.9 Score=40.39 Aligned_cols=89 Identities=13% Similarity=-0.059 Sum_probs=62.9
Q ss_pred eeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eEecccceeeeeCCCeEEEEEC
Q 041206 168 VNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNL 243 (371)
Q Consensus 168 v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~ 243 (371)
..++.|+|. ..++...|+.|++..+.... ..+..+......++++|+|.|+ ++.| ...|++.-|-.
T Consensus 158 ~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~---~~v~s~p~t~~~Tav~WSprGKQl~iG-------~nnGt~vQy~P 227 (1405)
T KOG3630|consen 158 QLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLA---QNVTSFPVTNSQTAVLWSPRGKQLFIG-------RNNGTEVQYEP 227 (1405)
T ss_pred cccccccCCccchhhhhccccchhhhhhhhhh---hhhcccCcccceeeEEeccccceeeEe-------cCCCeEEEeec
Confidence 567788887 77888889999998876542 2223333333889999999996 9999 99999988876
Q ss_pred CCceEEEEeec----CCCcEEEEEEcCC
Q 041206 244 DNLECVQTLKG----HSDTVTSLLFWDE 267 (371)
Q Consensus 244 ~~~~~~~~~~~----~~~~v~~~~~~~~ 267 (371)
. ++....+.+ ....|.+|+|.+.
T Consensus 228 ~-leik~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 228 S-LEIKSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred c-cceeecccCCCcCCCcceeEEEEecc
Confidence 5 333333322 1367999999843
No 419
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=90.86 E-value=11 Score=33.45 Aligned_cols=95 Identities=12% Similarity=0.164 Sum_probs=46.0
Q ss_pred ccCCceeeEeeeCccCCeEEE-----EEcCCCCEEEEEe-CCC--cEEEEECCCCceEEEEeCCCe---eEEEeecCCEE
Q 041206 82 TTNSLATLMKLNGHKKAVTNV-----GLPSGSNKLYSGS-RDG--RVSVWDRDSGRCVNVITNGAE---IGCLISEGSWV 150 (371)
Q Consensus 82 ~~~~~~~~~~l~~h~~~V~~~-----~~~~~~~~l~s~~-~dg--~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~ 150 (371)
.+.++..+..|..+...-..+ +|.++|+.|+-++ .|| .+.+-|+.+++..+.-..... -.++.++++.+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 455666666666544433333 4567887655554 454 577778888877665543211 23555555554
Q ss_pred -EEecCCcEEEEEeCCCCeeEEEEeCC
Q 041206 151 -FLGLPNAVKSWRVNAASVNALVVNND 176 (371)
Q Consensus 151 -~~~~~~~i~~~~~~~~~v~~~~~~~~ 176 (371)
++.....+...|+.+.....|.--|+
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~ 122 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVVYEVPD 122 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEEEE--T
T ss_pred EEEECCCeEEEEECCcCcEEEEEECCc
Confidence 45667788888888887766655555
No 420
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=90.74 E-value=7.7 Score=36.00 Aligned_cols=139 Identities=9% Similarity=-0.035 Sum_probs=79.2
Q ss_pred ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEeecCC-CcEEEEEEc-CCeEEEEeCCCcEEEEEccCCC
Q 041206 210 WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHS-DTVTSLLFW-DEYLFSSSLDETIKIWLYTHTK 287 (371)
Q Consensus 210 ~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~ 287 (371)
+|..+.+...|.+..| +.|| +..||..+++.++.-.... .+|..+.-+ ...|..|+.+| +.+.+.+..+
T Consensus 166 ~V~aLv~D~~g~lWvg-------T~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G~~ 236 (671)
T COG3292 166 PVVALVFDANGRLWVG-------TPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQG-VYLQEAEGWR 236 (671)
T ss_pred cceeeeeeccCcEEEe-------cCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEeccc-eEEEchhhcc
Confidence 7888999988888888 8777 5668888888776544433 456665555 66788888877 6666544311
Q ss_pred -----CcceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec---CCceEEEEEeCCCCeEEeeCCCCcEEE
Q 041206 288 -----NNAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF---SRREVEVDQIGPAGLFFPGDASGSVGV 358 (371)
Q Consensus 288 -----~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~s~~~~l~~~~~dg~i~i 358 (371)
..-+...+........+ .+..|+.+|..+.--.+.+-...... .-+.|.++....+|-|-+++.+|.+++
T Consensus 237 ~sn~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~ 314 (671)
T COG3292 237 ASNWGPMLPSGNILLLVQDAQG-ELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRY 314 (671)
T ss_pred ccccCCCCcchheeeeecccCC-CEEEeecccceeEecCCCCccccccccCCccccccceeeccCCCEeeeccCceEEE
Confidence 11122222222222222 56677776654432222222111111 134566666666666666766666554
No 421
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.61 E-value=19 Score=37.06 Aligned_cols=162 Identities=12% Similarity=0.085 Sum_probs=87.5
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-CeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEE
Q 041206 95 HKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNG-AEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVV 173 (371)
Q Consensus 95 h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~ 173 (371)
|...=..+-+-|.=.+.... -|..+.+|+.+++.....+..- ..|..+. +.....+ .|
T Consensus 77 ~~~~~~~mGiFpeI~RaWiT-iDn~L~lWny~~~~e~~~~d~~shtIl~V~---------------LvkPkpg-----vF 135 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAWIT-IDNNLFLWNYESDNELAEYDGLSHTILKVG---------------LVKPKPG-----VF 135 (1311)
T ss_pred CcceeeeeccchhhcceEEE-eCCeEEEEEcCCCCccccccchhhhheeee---------------eecCCCC-----cc
Confidence 55555566666655554443 4778999999987655555432 1111110 0000000 11
Q ss_pred eCC--EEEEEeCCCeEEEEeccCCCC-----cceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECC-
Q 041206 174 NND--LLFAGSEGGVISVWKGTFVAN-----PFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLD- 244 (371)
Q Consensus 174 ~~~--~l~~~~~dg~v~iwd~~~~~~-----~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~- 244 (371)
.|. ++++-+.--.|.++-+.-... .+....++.... .|+|+....+|+++-+ +.||.+ |.+.
T Consensus 136 v~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~-------G~dg~l--yEl~Y 206 (1311)
T KOG1900|consen 136 VPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFA-------GRDGNL--YELVY 206 (1311)
T ss_pred hhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEe-------ecCCCE--EEEEE
Confidence 122 333333334455553322111 011112233334 8899998888997777 788844 4331
Q ss_pred ---Cc---e-E----------------EEEee-cCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCC
Q 041206 245 ---NL---E-C----------------VQTLK-GHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHT 286 (371)
Q Consensus 245 ---~~---~-~----------------~~~~~-~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~ 286 (371)
.+ + + +..+. .+.++|..+..+ -+.+.+-+..++|.+||+...
T Consensus 207 q~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 207 QAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred eccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 10 0 0 11223 567799999998 468888999999999997663
No 422
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=90.52 E-value=5.9 Score=36.88 Aligned_cols=89 Identities=10% Similarity=0.070 Sum_probs=50.2
Q ss_pred CEEEEecCCcEEEEEeCCC---------------------CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEE
Q 041206 148 SWVFLGLPNAVKSWRVNAA---------------------SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVAS 204 (371)
Q Consensus 148 ~~~~~~~~~~i~~~~~~~~---------------------~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 204 (371)
.++++...+.|.+|.+... --..+.|+|. .|++-+....-.+++++.... +....
T Consensus 74 aLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s--rVkaD 151 (671)
T PF15390_consen 74 ALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS--RVKAD 151 (671)
T ss_pred ceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc--eEEEe
Confidence 4556666666666666422 1234567887 444444444434556655432 33334
Q ss_pred EecCcceEEEEecCCce-eEecccceeeeeCCCeEEEEECC
Q 041206 205 IRAPLWFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLD 244 (371)
Q Consensus 205 ~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~ 244 (371)
++....|.|.+|.+||+ |+.+ + +..=.-++||-.
T Consensus 152 i~~~G~IhCACWT~DG~RLVVA-----v-GSsLHSyiWd~~ 186 (671)
T PF15390_consen 152 IKTSGLIHCACWTKDGQRLVVA-----V-GSSLHSYIWDSA 186 (671)
T ss_pred ccCCceEEEEEecCcCCEEEEE-----e-CCeEEEEEecCc
Confidence 44444999999999995 4332 0 334455788754
No 423
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.44 E-value=1.2 Score=24.92 Aligned_cols=39 Identities=8% Similarity=0.003 Sum_probs=25.9
Q ss_pred CCCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEe
Q 041206 303 AKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQI 341 (371)
Q Consensus 303 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~ 341 (371)
++.++++...++.|.++|..+++.+..+........+.|
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 343455555688999999988887777665444455554
No 424
>PRK13684 Ycf48-like protein; Provisional
Probab=90.15 E-value=13 Score=32.84 Aligned_cols=107 Identities=10% Similarity=0.007 Sum_probs=56.4
Q ss_pred CeeEEEEeCC-EEEEEeCCCeEEEEeccCCCCcceeeEEE-ecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEEC
Q 041206 167 SVNALVVNND-LLFAGSEGGVISVWKGTFVANPFKQVASI-RAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNL 243 (371)
Q Consensus 167 ~v~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~ 243 (371)
.++++.+.++ .++..+..|.+.+=....+ ..++....- .... .+..+.+.+++.++.+ +.+|.+.. ..
T Consensus 216 ~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G-~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-------G~~G~v~~-S~ 286 (334)
T PRK13684 216 RLQSMGFQPDGNLWMLARGGQIRFNDPDDL-ESWSKPIIPEITNGYGYLDLAYRTPGEIWAG-------GGNGTLLV-SK 286 (334)
T ss_pred cceeeeEcCCCCEEEEecCCEEEEccCCCC-CccccccCCccccccceeeEEEcCCCCEEEE-------cCCCeEEE-eC
Confidence 5778888776 4444556676643222222 112221111 1122 6788899988876666 67776653 33
Q ss_pred CCceEEEEee---cCCCcEEEEEEc-CCeEEEEeCCCcEEEEE
Q 041206 244 DNLECVQTLK---GHSDTVTSLLFW-DEYLFSSSLDETIKIWL 282 (371)
Q Consensus 244 ~~~~~~~~~~---~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd 282 (371)
..++.-...+ .-....+.+.|. ++..+..+..|.|--|+
T Consensus 287 d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 287 DGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYV 329 (334)
T ss_pred CCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEec
Confidence 3333322221 112346666665 55566666777776654
No 425
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=90.11 E-value=13 Score=33.00 Aligned_cols=242 Identities=11% Similarity=0.093 Sum_probs=114.0
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-Ce-------------------eEEEeecCCEEEEe--
Q 041206 96 KKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNG-AE-------------------IGCLISEGSWVFLG-- 153 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~-------------------~~~~~~~~~~~~~~-- 153 (371)
...+....|+|+|+.+|-.. ++.|.+++..+++..+.-..+ .. ....++++++++..
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 67889999999999998886 578999998877444322222 11 11122344444331
Q ss_pred cCCcEEEEEe---CCC-----CeeEEEEeCCEEEEEeCCC--eEEEEeccCCCCcceeeEEE---ecCc-ceEEEEecCC
Q 041206 154 LPNAVKSWRV---NAA-----SVNALVVNNDLLFAGSEGG--VISVWKGTFVANPFKQVASI---RAPL-WFCSLSSSND 219 (371)
Q Consensus 154 ~~~~i~~~~~---~~~-----~v~~~~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~---~~~~-~v~~~~~~~~ 219 (371)
.+..+..+.+ ... .+..+.+ -..|..+- .+.++|+.+++.. .+... .... .+..+.|.++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~Y----Pk~G~~np~v~l~v~~~~~~~~~--~~~~~~~~~~~~~yl~~v~W~~d 194 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRY----PKAGDPNPRVSLFVVDLASGKTT--ELDPPNSLNPQDYYLTRVGWSPD 194 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE------BTTS---EEEEEEEESSSTCCC--EE---HHHHTSSEEEEEEEEEET
T ss_pred CCcCCceEEeeccCCccccCCccccccc----CCCCCcCCceEEEEEECCCCcEE--EeeeccccCCCccCcccceecCC
Confidence 2222222211 111 1111111 11222223 3556788776321 11111 1223 7889999998
Q ss_pred ce-eEecccceeeeeC---CCeEEEEECCCceEEEEeec-CCC---cEEEEEEc----CCeEEEEeCCCcEEEEEccCCC
Q 041206 220 TR-WNSKEEAAVFEFC---GHTTRTWNLDNLECVQTLKG-HSD---TVTSLLFW----DEYLFSSSLDETIKIWLYTHTK 287 (371)
Q Consensus 220 ~~-l~~~~~~~~~~~~---dg~i~iwd~~~~~~~~~~~~-~~~---~v~~~~~~----~~~l~s~~~dg~i~iwd~~~~~ 287 (371)
+. ++.. .... ...+.++|..+++....+.. ... .-....+. ..++.....+|.-.||-+....
T Consensus 195 ~~~l~~~-----~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~ 269 (353)
T PF00930_consen 195 GKRLWVQ-----WLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDG 269 (353)
T ss_dssp TEEEEEE-----EEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTS
T ss_pred CcEEEEE-----EcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccc
Confidence 86 5443 0022 23566778876654322221 111 11233332 3466666677865555544332
Q ss_pred C------cceecce--EEEEecCCCCEEEEecCC----CeEEEEEcC-CcceeeeecCCceE-EEEEeCCCC--eEEeeC
Q 041206 288 N------NAELSSL--FGMLDAEAKPVLFSSGKD----SAIRLYELP-SFKLRARIFSRREV-EVDQIGPAG--LFFPGD 351 (371)
Q Consensus 288 ~------~~~~~~~--~~~~~~~~~~~l~~~~~d----~~i~iwd~~-~~~~~~~~~~~~~v-~~~~~s~~~--~l~~~~ 351 (371)
. .+.. .+ ...+...++.+.+++..+ ..|+.-++. .+.. ..+...... ..+.|||++ ++.+++
T Consensus 270 ~~~~~lT~G~~-~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~-~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 270 GKPRQLTSGDW-EVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP-KCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp SEEEESS-SSS--EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE-EESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred cceeccccCce-eecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe-EeccCCCCCceEEEECCCCCEEEEEEc
Confidence 2 1111 12 112344445455566543 356666666 3333 333322222 689999999 554444
No 426
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.96 E-value=0.03 Score=49.73 Aligned_cols=139 Identities=12% Similarity=0.125 Sum_probs=93.2
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC---
Q 041206 100 TNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--- 176 (371)
Q Consensus 100 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--- 176 (371)
....|-|.+.-++.++.+..|..||-. ++....... ++....++|+-+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~----------------------------tg~aldm~wDkegdv 88 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNP----------------------------TGKALDMAWDKEGDV 88 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccCC----------------------------chhHhhhhhccccch
Confidence 345567766668888888889999843 444433332 223455666544
Q ss_pred EEEEEeCCCeEEEEeccCCCCcceeeEEEe--cCcceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEee
Q 041206 177 LLFAGSEGGVISVWKGTFVANPFKQVASIR--APLWFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLK 253 (371)
Q Consensus 177 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~ 253 (371)
.++.+-..+.+.+||+.+.. .+.+. +...-.-+.|++... ++.+ ...|.+.|++..+.+.+-..-
T Consensus 89 lavlAek~~piylwd~n~ey-----tqqLE~gg~~s~sll~wsKg~~el~ig-------~~~gn~viynhgtsR~iiv~G 156 (615)
T KOG2247|consen 89 LAVLAEKTGPIYLWDVNSEY-----TQQLESGGTSSKSLLAWSKGTPELVIG-------NNAGNIVIYNHGTSRRIIVMG 156 (615)
T ss_pred hhhhhhcCCCeeechhhhhh-----HHHHhccCcchHHHHhhccCCcccccc-------ccccceEEEeccchhhhhhhc
Confidence 56667778999999998752 11222 111112267888665 7778 889999999998877665555
Q ss_pred cCCCcEEEEEEc-CCeEEEEeCCCcEE
Q 041206 254 GHSDTVTSLLFW-DEYLFSSSLDETIK 279 (371)
Q Consensus 254 ~~~~~v~~~~~~-~~~l~s~~~dg~i~ 279 (371)
.|...++++++. .++.+.++.|..+.
T Consensus 157 kh~RRgtq~av~lEd~vil~dcd~~L~ 183 (615)
T KOG2247|consen 157 KHQRRGTQIAVTLEDYVILCDCDNTLS 183 (615)
T ss_pred ccccceeEEEecccceeeecCcHHHHH
Confidence 588899999998 77888777766543
No 427
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.94 E-value=14 Score=33.06 Aligned_cols=180 Identities=9% Similarity=-0.035 Sum_probs=92.8
Q ss_pred EEEEEeCCCeEEEEeccCCCCcceeeEEEecC--c-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEee
Q 041206 177 LLFAGSEGGVISVWKGTFVANPFKQVASIRAP--L-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLK 253 (371)
Q Consensus 177 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~--~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~ 253 (371)
.++++..+|.|.-.|..++. .+-..... . .+.+-....+|+++.+ +.++.++.+|.++++.+....
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~----~~W~~~~~~~~~~~~~~~~~~~G~i~~g-------~~~g~~y~ld~~~G~~~W~~~ 138 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGL----VKWSYPLLGAVAQLSGPILGSDGKIYVG-------SWDGKLYALDASTGTLVWSRN 138 (370)
T ss_pred eEEEecCCCcEEEEeCCCCc----EEecccCcCcceeccCceEEeCCeEEEe-------cccceEEEEECCCCcEEEEEe
Confidence 66666777877777777763 22111110 1 2222222237888888 999999999999999887777
Q ss_pred cCC-CcEEEEEE-cCCeEEEEeCCCcEEEEEccCCCCcc-------eecceEEEEecCCCCEEEEecC--CCeEEEEEcC
Q 041206 254 GHS-DTVTSLLF-WDEYLFSSSLDETIKIWLYTHTKNNA-------ELSSLFGMLDAEAKPVLFSSGK--DSAIRLYELP 322 (371)
Q Consensus 254 ~~~-~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~--d~~i~iwd~~ 322 (371)
... ..+..-.. ....+...+.++.+.-.+..+....- .-..+........+ .++.+.. ++.+.-.|..
T Consensus 139 ~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~ 217 (370)
T COG1520 139 VGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAE 217 (370)
T ss_pred cCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEcc
Confidence 555 11111111 12333333355666555544333200 00011111112223 4555555 6677778888
Q ss_pred CcceeeeecCCceEEE-----EEeCC------CCeEEeeCCCCcEEEEEccccceec
Q 041206 323 SFKLRARIFSRREVEV-----DQIGP------AGLFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 323 ~~~~~~~~~~~~~v~~-----~~~s~------~~~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
++...........+.. ..... ++-+..++.++.+...+..+++..+
T Consensus 218 ~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W 274 (370)
T COG1520 218 DGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIW 274 (370)
T ss_pred CCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEE
Confidence 8887777542111111 11111 1134556667777777777666554
No 428
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.61 E-value=7.3 Score=35.62 Aligned_cols=139 Identities=12% Similarity=0.091 Sum_probs=80.2
Q ss_pred CCCEEEE-EeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC---------
Q 041206 107 GSNKLYS-GSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--------- 176 (371)
Q Consensus 107 ~~~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--------- 176 (371)
+..+++. |.....++--|++-|+.+.....+..+ -+.+.|.
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-----------------------------vVqy~p~~kf~qmt~e 528 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-----------------------------VVQYNPYFKFQQMTDE 528 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-----------------------------eeecCCchhHHhcCcc
Confidence 4444443 444556666777777776665543332 2334443
Q ss_pred EEEEEeCCCeEEEEeccCCCCcceeeE--EEecCcceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEeec
Q 041206 177 LLFAGSEGGVISVWKGTFVANPFKQVA--SIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKG 254 (371)
Q Consensus 177 ~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 254 (371)
.-++|-.+..|.-.|.+-..+...... .+.......|..-...|.++++ +..|.|++||--..+....+++
T Consensus 529 qtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~a-------s~kGDirLyDRig~rAKtalP~ 601 (776)
T COG5167 529 QTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAA-------SRKGDIRLYDRIGKRAKTALPG 601 (776)
T ss_pred ceEEeecccceEEecccccCCceeeeeehhccccccccccccccCceEEEe-------cCCCceeeehhhcchhhhcCcc
Confidence 445566666666667665432111111 1111114445555556778888 9999999999765555556677
Q ss_pred CCCcEEEEEEc--CCeEEEEeCCCcEEEEE
Q 041206 255 HSDTVTSLLFW--DEYLFSSSLDETIKIWL 282 (371)
Q Consensus 255 ~~~~v~~~~~~--~~~l~s~~~dg~i~iwd 282 (371)
-...|..+... |.++++.+. ..+.+-|
T Consensus 602 lG~aIk~idvta~Gk~ilaTCk-~yllL~d 630 (776)
T COG5167 602 LGDAIKHIDVTANGKHILATCK-NYLLLTD 630 (776)
T ss_pred cccceeeeEeecCCcEEEEeec-ceEEEEe
Confidence 77788887776 665555443 3566666
No 429
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.45 E-value=21 Score=34.45 Aligned_cols=71 Identities=15% Similarity=0.076 Sum_probs=45.1
Q ss_pred eccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcE
Q 041206 41 FGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRV 120 (371)
Q Consensus 41 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v 120 (371)
..++..++..+|.+.--. + ....+|++++ ..+.++..+.-....+..+.|+.+. .|+.-..+|++
T Consensus 42 p~gGpIAV~r~p~~~~~~----~-~a~~~I~If~---------~sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v 106 (829)
T KOG2280|consen 42 PFGGPIAVTRSPSKLVPL----Y-SARPYIRIFN---------ISGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTV 106 (829)
T ss_pred ccCCceEEEecccccccc----c-ccceeEEEEe---------ccccchHHHHhcCCCeeeecccCCc-eEEEEeccceE
Confidence 344445555555333111 0 2344677777 4456666665555588999999765 66777899999
Q ss_pred EEEECC
Q 041206 121 SVWDRD 126 (371)
Q Consensus 121 ~iwd~~ 126 (371)
.++++-
T Consensus 107 ~Vy~~~ 112 (829)
T KOG2280|consen 107 HVYGLL 112 (829)
T ss_pred EEeecc
Confidence 999975
No 430
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=89.39 E-value=26 Score=35.33 Aligned_cols=130 Identities=11% Similarity=0.146 Sum_probs=75.7
Q ss_pred CCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEe--ecCCCcEE
Q 041206 183 EGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTL--KGHSDTVT 260 (371)
Q Consensus 183 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~ 260 (371)
.+|.++.|++-......+.+........+.+++-.. +++++ +....+++||+...++++.. +.-...|.
T Consensus 910 ~~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~-~~~La--------gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is 980 (1205)
T KOG1898|consen 910 SSGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQ-GRVLA--------GVGRFLRLYDLGKKKLLRKCELKFIPNRIS 980 (1205)
T ss_pred CCCceEEEEEEecCceeeeeeccCCCccceEEeccC-CEEEE--------ecccEEEEeeCChHHHHhhhhhccCceEEE
Confidence 456688887765543223333332222454444433 34444 46789999999887766443 23356788
Q ss_pred EEEEcCCeEEEEeCCCcEEEEEccCCCCc-------ceecceEEEEecCCCCEEEEecCCCeEEEEEcC
Q 041206 261 SLLFWDEYLFSSSLDETIKIWLYTHTKNN-------AELSSLFGMLDAEAKPVLFSSGKDSAIRLYELP 322 (371)
Q Consensus 261 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 322 (371)
.+++....++.|...-.+.++..+..... .....++.+..-+.. .++.+..-|.+.+-.+.
T Consensus 981 ~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~~-tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 981 SIQTYGARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELLDYD-TVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EEeecceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEecCC-ceeeccccCcEEEEECC
Confidence 88888888888887777776665543321 111233333444444 56667666777776554
No 431
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.18 E-value=11 Score=38.54 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=79.3
Q ss_pred eCCCeEEEEECCCceEEEEeecCCCcEEEEEEc---C-------CeEEEEeCCCcEEEEEccCCCCcc------------
Q 041206 233 FCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW---D-------EYLFSSSLDETIKIWLYTHTKNNA------------ 290 (371)
Q Consensus 233 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~---~-------~~l~s~~~dg~i~iwd~~~~~~~~------------ 290 (371)
+.|+.+.+|+.+++.....+.+-...|..+..- + ++++..+.--.|.++-+...+...
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 569999999999977777777777777777654 1 244444444556666544332100
Q ss_pred -eecceEEEEecCCCCEEEEecCCCeEEEEEcC----Cc---c--------------ee---eee--cCCceEEEEEeCC
Q 041206 291 -ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELP----SF---K--------------LR---ARI--FSRREVEVDQIGP 343 (371)
Q Consensus 291 -~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~----~~---~--------------~~---~~~--~~~~~v~~~~~s~ 343 (371)
.-..+.++....+++++++| .|| .+|.+. .+ + .+ ..+ .+.++|..+++..
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 01134445556667555554 555 444331 10 0 00 011 1256899999976
Q ss_pred CC-eEEeeCCCCcEEEEEccc
Q 041206 344 AG-LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 344 ~~-~l~~~~~dg~i~iw~~~~ 363 (371)
.. .+.+=+..|+|.+|++..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 66 889999999999999976
No 432
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=88.99 E-value=12 Score=31.16 Aligned_cols=64 Identities=17% Similarity=0.117 Sum_probs=44.4
Q ss_pred CeeEEEEeC------C---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceE---EEEec-CCceeEecccceeee
Q 041206 167 SVNALVVNN------D---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFC---SLSSS-NDTRWNSKEEAAVFE 232 (371)
Q Consensus 167 ~v~~~~~~~------~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~---~~~~~-~~~~l~~~~~~~~~~ 232 (371)
.|+|++--. + .++.|+.+|.|.|.|.+.. ..+..++-.. ++. .-.+. -|.+++.+
T Consensus 178 ~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af----~il~~~~lpsvPv~i~~~G~~devdyRI~Va------- 246 (257)
T PF14779_consen 178 VITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAF----TILKQVQLPSVPVFISVSGQYDEVDYRIVVA------- 246 (257)
T ss_pred eeEEeeeecccccCCCCcceEEEEecCCeEEEECchhh----eeEEEEecCCCceEEEEEeeeeccceEEEEE-------
Confidence 577776521 1 8999999999999998876 6666666665 442 12232 34567777
Q ss_pred eCCCeEEEE
Q 041206 233 FCGHTTRTW 241 (371)
Q Consensus 233 ~~dg~i~iw 241 (371)
+.||.|++.
T Consensus 247 ~Rdg~iy~i 255 (257)
T PF14779_consen 247 CRDGKIYTI 255 (257)
T ss_pred eCCCEEEEE
Confidence 899988764
No 433
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=88.78 E-value=18 Score=32.79 Aligned_cols=43 Identities=16% Similarity=-0.062 Sum_probs=34.2
Q ss_pred ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCc
Q 041206 210 WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDT 258 (371)
Q Consensus 210 ~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 258 (371)
.+.+++.+|.+++++. ...-|.|.++|+.++..++.+++..+.
T Consensus 309 ~~~~i~~sP~~~laA~------tDslGRV~LiD~~~~~vvrmWKGYRdA 351 (415)
T PF14655_consen 309 EGESICLSPSGRLAAV------TDSLGRVLLIDVARGIVVRMWKGYRDA 351 (415)
T ss_pred eEEEEEECCCCCEEEE------EcCCCcEEEEECCCChhhhhhccCccc
Confidence 6788999998875443 156699999999999999998886653
No 434
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=88.57 E-value=21 Score=33.31 Aligned_cols=244 Identities=15% Similarity=0.177 Sum_probs=128.1
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC--CeeEEEeec-CCEEEEecCCcEEEEEeCCC------
Q 041206 96 KKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNG--AEIGCLISE-GSWVFLGLPNAVKSWRVNAA------ 166 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~------ 166 (371)
..+|..+.+..++ .+..|+.|| +..||..+++.++..... .++..+..+ +..+.++.+..+.+.+....
T Consensus 164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqGv~~~e~~G~~~sn~~ 241 (671)
T COG3292 164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQGVYLQEAEGWRASNWG 241 (671)
T ss_pred CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEeccceEEEchhhccccccC
Confidence 4578888898877 567778888 788888888776654432 345444433 56677788888888777663
Q ss_pred ------CeeEEEEeCC-EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc--ceEEEEecCCceeEecccceeeeeCCCe
Q 041206 167 ------SVNALVVNND-LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL--WFCSLSSSNDTRWNSKEEAAVFEFCGHT 237 (371)
Q Consensus 167 ------~v~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~l~~~~~~~~~~~~dg~ 237 (371)
.|..+.-+.+ .+-.|+..|-.+. .+.... ......-..+. .|.++....+|.+.++ +.++.
T Consensus 242 ~~lp~~~I~ll~qD~qG~lWiGTenGl~r~-~l~rq~--Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~-------t~~gi 311 (671)
T COG3292 242 PMLPSGNILLLVQDAQGELWIGTENGLWRT-RLPRQG--LQIPLSKMHLGVSTVNSLWLDTDGSLWVG-------TYGGI 311 (671)
T ss_pred CCCcchheeeeecccCCCEEEeecccceeE-ecCCCC--ccccccccCCccccccceeeccCCCEeee-------ccCce
Confidence 3333333333 5555665554322 222221 11111111122 6778888888889888 88877
Q ss_pred EEEEECCCceEEEEeecCCCc------------EEEEEEc---CCeEEEEeCCCcEEEEEccCCCCcceecceEEEEecC
Q 041206 238 TRTWNLDNLECVQTLKGHSDT------------VTSLLFW---DEYLFSSSLDETIKIWLYTHTKNNAELSSLFGMLDAE 302 (371)
Q Consensus 238 i~iwd~~~~~~~~~~~~~~~~------------v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 302 (371)
+++-+-. ......+....+. ...+.+. +..++.-+..|.+ |-....-....++..+ ...
T Consensus 312 v~~~~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~--v~sv~q~Rg~nit~~~--~d~- 385 (671)
T COG3292 312 VRYLTAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGEL--VRSVHQLRGMNITTTL--EDS- 385 (671)
T ss_pred EEEecch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcE--EEEeeeccccccchhh--hcc-
Confidence 7654432 1121122211111 1111111 2222222222222 1111111112221221 222
Q ss_pred CCCEEEEecCCCeEEEEEcCC-cceeeeec--CCceEEEEEeCCCCeEEeeCCCCcEEE
Q 041206 303 AKPVLFSSGKDSAIRLYELPS-FKLRARIF--SRREVEVDQIGPAGLFFPGDASGSVGV 358 (371)
Q Consensus 303 ~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~--~~~~v~~~~~s~~~~l~~~~~dg~i~i 358 (371)
.+ .+..++..+-+..|+.++ +....+.. ..++|..+-=.|++.|..|+.+|.++.
T Consensus 386 ~g-~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dnsLWIGTs~Glvk~ 443 (671)
T COG3292 386 RG-RLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNSLWIGTSGGLVKR 443 (671)
T ss_pred CC-cEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCCEEEeccCCeEec
Confidence 33 466666665566677766 22322222 267788888888887888888887765
No 435
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.28 E-value=3 Score=23.26 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=24.7
Q ss_pred CCCCEEEEEe-CCCcEEEEECCCCceEEEEeCC
Q 041206 106 SGSNKLYSGS-RDGRVSVWDRDSGRCVNVITNG 137 (371)
Q Consensus 106 ~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~ 137 (371)
|++++|+.+. .+++|.++|..+++.+..+..+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 5677666654 5789999999999888877764
No 436
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=87.89 E-value=1.6 Score=22.06 Aligned_cols=25 Identities=8% Similarity=0.391 Sum_probs=20.9
Q ss_pred CeeEEEEeCCEEEEEeCCCeEEEEe
Q 041206 167 SVNALVVNNDLLFAGSEGGVISVWK 191 (371)
Q Consensus 167 ~v~~~~~~~~~l~~~~~dg~v~iwd 191 (371)
.|.+++..+.++++++..+.+++|.
T Consensus 3 ~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEEecC
Confidence 4778888888999999999998873
No 437
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.75 E-value=9.2 Score=28.22 Aligned_cols=64 Identities=11% Similarity=-0.006 Sum_probs=41.7
Q ss_pred CCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCC----CeEEeeCCCCcEEEEEccccceec
Q 041206 304 KPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPA----GLFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 304 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~----~~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
...|+.|+. ..+..||+.....+..-.-...|+++.+-.- .-++..+.+..|.-||....+.-+
T Consensus 64 ~D~LliGt~-t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 64 RDCLLIGTQ-TSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred cCEEEEecc-ceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
Confidence 346666655 5799999998776655555677777776321 145555557788877777665544
No 438
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=87.72 E-value=13 Score=29.97 Aligned_cols=120 Identities=9% Similarity=0.101 Sum_probs=67.9
Q ss_pred eCCCeEEEEECC--CceEEEEeecCCCcEEEEEEc--CCeEEEEeCCC------cEEEEE-ccCCCC-cceecceEEEEe
Q 041206 233 FCGHTTRTWNLD--NLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDE------TIKIWL-YTHTKN-NAELSSLFGMLD 300 (371)
Q Consensus 233 ~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg------~i~iwd-~~~~~~-~~~~~~~~~~~~ 300 (371)
.....|.+|++. ..+++.+|.. -+.|..+.++ |+|++|-=.+. .+|+|- .+.... ...+ .+..+
T Consensus 35 ~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v-~vRia-- 110 (215)
T PF14761_consen 35 ASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV-RVRIA-- 110 (215)
T ss_pred cCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE-EEEEc--
Confidence 677889999988 3456677764 3789999998 89999864332 455552 222211 1111 11100
Q ss_pred cCCCCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccce
Q 041206 301 AEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 301 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~ 366 (371)
+ .-+.++..... ...-.+-++....++.+++..|-. -|+.|+ ++++.+|.+.....
T Consensus 111 --G--~~v~~~~~~~~-----~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 111 --G--HRVTPSFNESS-----KDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTI 167 (215)
T ss_pred --c--cccccCCCCcc-----ccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEE
Confidence 0 01111111111 111233344457788999999866 666665 45899998875543
No 439
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=87.11 E-value=18 Score=30.80 Aligned_cols=117 Identities=5% Similarity=0.006 Sum_probs=78.2
Q ss_pred CeeEEEEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCceeEecccceeeeeCCCeEEEEECCCc
Q 041206 167 SVNALVVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNL 246 (371)
Q Consensus 167 ~v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~ 246 (371)
-+..+.+++++...+..+.-++|.|+.++..+ ..+..+.......++..+.+ ....+ ..|.-+.+.|+.+.
T Consensus 88 l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP-~~~~~lnt~gyaygv~vsGn-~aYVa-------dlddgfLivdvsdp 158 (370)
T COG5276 88 LFADVRVSEEYVYVADWSSGLRIVDISTPDSP-TLIGFLNTDGYAYGVYVSGN-YAYVA-------DLDDGFLIVDVSDP 158 (370)
T ss_pred hhheeEecccEEEEEcCCCceEEEeccCCCCc-ceeccccCCceEEEEEecCC-EEEEe-------eccCcEEEEECCCC
Confidence 36778899999999999999999999988543 22222222123344444432 23333 44555667887653
Q ss_pred ---eEEEEeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCCccee
Q 041206 247 ---ECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKNNAEL 292 (371)
Q Consensus 247 ---~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 292 (371)
+...++......-..++.++++-..+..|+-+.+-|+..+.....+
T Consensus 159 ssP~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli 207 (370)
T COG5276 159 SSPQLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLI 207 (370)
T ss_pred CCceeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEE
Confidence 3344455555555788888999999999999999999887764433
No 440
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=86.95 E-value=21 Score=31.42 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=32.8
Q ss_pred EEEEecCCCeEEEEEcCCcceee---eec--CCceEEEEEeCCCC-eEEeeCCCCcEE
Q 041206 306 VLFSSGKDSAIRLYELPSFKLRA---RIF--SRREVEVDQIGPAG-LFFPGDASGSVG 357 (371)
Q Consensus 306 ~l~~~~~d~~i~iwd~~~~~~~~---~~~--~~~~v~~~~~s~~~-~l~~~~~dg~i~ 357 (371)
++++.-..+.|....+.....+. .+. ....+..+++.||| ++++-+.+|.|.
T Consensus 273 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 273 LFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred EEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 55555556778888776443222 222 23479999999999 666666788874
No 441
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.90 E-value=0.086 Score=47.02 Aligned_cols=137 Identities=9% Similarity=0.041 Sum_probs=92.6
Q ss_pred EEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc---CCeEEEEeCCCcEEEEEccCCC
Q 041206 212 CSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW---DEYLFSSSLDETIKIWLYTHTK 287 (371)
Q Consensus 212 ~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~ 287 (371)
....|.+.+. ++.+ +.+-.+..||-.. +...... .++....++|+ +..++.+-..+.+.+||+....
T Consensus 38 i~~~w~~e~~nlava-------ca~tiv~~YD~ag-q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey 108 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVA-------CANTIVIYYDKAG-QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY 108 (615)
T ss_pred ceeeEecCCCceehh-------hhhhHHHhhhhhc-ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhh
Confidence 3455666554 7777 7888888888653 3333333 34455677777 4566677788999999976543
Q ss_pred Cc----ceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCCeEEeeCCCCcEE
Q 041206 288 NN----AELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAGLFFPGDASGSVG 357 (371)
Q Consensus 288 ~~----~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~l~~~~~dg~i~ 357 (371)
.. +--..-....+.++...++.+-..+.+.|++..+.+.+.... |...++++++.+.++.+.++.|..+.
T Consensus 109 tqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~ 183 (615)
T KOG2247|consen 109 TQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLS 183 (615)
T ss_pred HHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHH
Confidence 21 111111223566666678888889999999998887776666 77899999999988777776665443
No 442
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.58 E-value=1.9 Score=40.91 Aligned_cols=41 Identities=22% Similarity=0.502 Sum_probs=31.2
Q ss_pred CCeEEEEEcC----CCCEEEEEeCCCcEEEEECCCCceEEEEeCC
Q 041206 97 KAVTNVGLPS----GSNKLYSGSRDGRVSVWDRDSGRCVNVITNG 137 (371)
Q Consensus 97 ~~V~~~~~~~----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 137 (371)
..+..+++++ +..+|++.+.|+++|+||+.+++++.+....
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 3456666666 7789999999999999999999998876543
No 443
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=86.55 E-value=12 Score=33.80 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=26.2
Q ss_pred eEEEEEcCCCCEEEEEeC--------------------CCcEEEEECCCCceEEEEeCC
Q 041206 99 VTNVGLPSGSNKLYSGSR--------------------DGRVSVWDRDSGRCVNVITNG 137 (371)
Q Consensus 99 V~~~~~~~~~~~l~s~~~--------------------dg~v~iwd~~~~~~~~~~~~~ 137 (371)
-+...+.|..+.++|... ..++.+||+.+.+.++++..+
T Consensus 183 gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg 241 (461)
T PF05694_consen 183 GYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG 241 (461)
T ss_dssp ---EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-
T ss_pred CCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC
Confidence 455667777777887642 357999999999999998875
No 444
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=85.89 E-value=17 Score=35.20 Aligned_cols=127 Identities=15% Similarity=0.132 Sum_probs=68.9
Q ss_pred CeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCc-eEEEEeCC-Ce-eEEEeecCCEEEEecCCcEEEEEeCCCCeeEEE
Q 041206 98 AVTNVGLPS--GSNKLYSGSRDGRVSVWDRDSGR-CVNVITNG-AE-IGCLISEGSWVFLGLPNAVKSWRVNAASVNALV 172 (371)
Q Consensus 98 ~V~~~~~~~--~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~ 172 (371)
.|+-|.... +...|+.|..||.|.+|.+++-. .+...... .. ......... +...-...+++++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~-----------f~~~v~~SaWGLd 170 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPF-----------FHLRVGASAWGLD 170 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCC-----------eEeecCCceeEEE
Confidence 455555543 56789999999999999864210 00000000 00 000000000 0001122688888
Q ss_pred Ee--CC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc-------eeEecccceeeeeCCCeEEE
Q 041206 173 VN--ND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT-------RWNSKEEAAVFEFCGHTTRT 240 (371)
Q Consensus 173 ~~--~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~-------~l~~~~~~~~~~~~dg~i~i 240 (371)
+. .. ++|++++...|.||-............... +. .|-+++|-++. .++++ +-.|.+.+
T Consensus 171 Ih~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~-~~hNIP~VSFl~~~~d~~G~v~v~a~-------dI~G~v~~ 242 (717)
T PF08728_consen 171 IHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQ-HSHNIPNVSFLDDDLDPNGHVKVVAT-------DISGEVWT 242 (717)
T ss_pred EEecCcceEEEEecCCceEEEEEEeccccccccccccc-cccCCCeeEeecCCCCCccceEEEEE-------eccCcEEE
Confidence 87 44 888888888888886554321111111111 33 67777777643 35667 88999998
Q ss_pred EEC
Q 041206 241 WNL 243 (371)
Q Consensus 241 wd~ 243 (371)
|++
T Consensus 243 ~~I 245 (717)
T PF08728_consen 243 FKI 245 (717)
T ss_pred EEE
Confidence 887
No 445
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=84.96 E-value=41 Score=32.96 Aligned_cols=30 Identities=3% Similarity=0.125 Sum_probs=24.5
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 041206 95 HKKAVTNVGLPSGSNKLYSGSRDGRVSVWD 124 (371)
Q Consensus 95 h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd 124 (371)
-.+.|.+.+||.|.+.++....+.+|-+++
T Consensus 111 v~nGIvaa~wS~DE~~~cvvt~~r~il~~~ 140 (1243)
T COG5290 111 VSNGIVAASWSADEKTWCVVTSTREILLFD 140 (1243)
T ss_pred ccCceEEEeeccCCceEEEEEcCceEEEEe
Confidence 356899999999999777777778888876
No 446
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=84.77 E-value=29 Score=31.04 Aligned_cols=171 Identities=14% Similarity=0.163 Sum_probs=97.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCee-EEE----eecCCE---EEEec----CCcEEEEEeCC--C------
Q 041206 107 GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEI-GCL----ISEGSW---VFLGL----PNAVKSWRVNA--A------ 166 (371)
Q Consensus 107 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~----~~~~~~---~~~~~----~~~i~~~~~~~--~------ 166 (371)
...+++....++-+.+||+. |+.+..+..+... ..+ ...+.. ++++. .+.|++|.+.. +
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~ 145 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVT 145 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-C
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcC
Confidence 45677777888889999986 6666666543221 111 123332 22322 14688887653 2
Q ss_pred -----------CeeEEEEe--CC----EEEEEeCCCeEEEEeccCCCC---cceeeEEEecCcceEEEEecCC-ceeEec
Q 041206 167 -----------SVNALVVN--ND----LLFAGSEGGVISVWKGTFVAN---PFKQVASIRAPLWFCSLSSSND-TRWNSK 225 (371)
Q Consensus 167 -----------~v~~~~~~--~~----~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~-~~l~~~ 225 (371)
.++.+|+- +. ++++...+|.+..|.+..... ..+.++.|.....+..+..... +.|+.+
T Consensus 146 ~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvg 225 (381)
T PF02333_consen 146 DPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVG 225 (381)
T ss_dssp BTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEE
T ss_pred CCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEe
Confidence 35666663 32 788888999999998863221 2356777777667888888775 468888
Q ss_pred ccceeeeeCCCeEEEEECCC-----ceEEEEeec--CCCcEEEEEEc----C-CeEEEEe-CCCcEEEEEccC
Q 041206 226 EEAAVFEFCGHTTRTWNLDN-----LECVQTLKG--HSDTVTSLLFW----D-EYLFSSS-LDETIKIWLYTH 285 (371)
Q Consensus 226 ~~~~~~~~~dg~i~iwd~~~-----~~~~~~~~~--~~~~v~~~~~~----~-~~l~s~~-~dg~i~iwd~~~ 285 (371)
-++.-|.-|+.+. ++.+....+ ....|-.|+.. + .||+.++ .+++..+|+.+.
T Consensus 226 -------EE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 226 -------EEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp -------ETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred -------cCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 8888888887752 222322222 23456666553 1 2444444 455677777554
No 447
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=84.53 E-value=0.72 Score=44.65 Aligned_cols=160 Identities=13% Similarity=0.154 Sum_probs=85.6
Q ss_pred EeeeCccCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC--CceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCC
Q 041206 90 MKLNGHKKAVTNVGLPS-GSNKLYSGSRDGRVSVWDRDS--GRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAA 166 (371)
Q Consensus 90 ~~l~~h~~~V~~~~~~~-~~~~l~s~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 166 (371)
..++|..+.|-.+.|-. +...++ -.-|.+.+||++- |+....+.. .-..+ ...
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v----~~~~p------------------~gs 181 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEV----TPITP------------------YGS 181 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEE----eecCc------------------CCC
Confidence 34677788888888853 222222 3446789998763 332222110 00000 111
Q ss_pred CeeEEEEeC---C--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEE-----------ecCCce-eEecccc
Q 041206 167 SVNALVVNN---D--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLS-----------SSNDTR-WNSKEEA 228 (371)
Q Consensus 167 ~v~~~~~~~---~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~-----------~~~~~~-l~~~~~~ 228 (371)
.+.-+.|.| + ++..+-.++.+++....+.. ...++.|. .+..++ .+|||+ ++..
T Consensus 182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~-----~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a--- 253 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL-----RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWA--- 253 (1283)
T ss_pred CcceeeecccccccceeeeccCCCceeEeeechHH-----HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEe---
Confidence 122222222 2 67777788888888776542 13344455 554443 566775 5666
Q ss_pred eeeeeCCCeEEEEECC-----CceEEEEeecCC-CcEEEEEEcC-----------CeEEEEe-CCCcEEEEEccC
Q 041206 229 AVFEFCGHTTRTWNLD-----NLECVQTLKGHS-DTVTSLLFWD-----------EYLFSSS-LDETIKIWLYTH 285 (371)
Q Consensus 229 ~~~~~~dg~i~iwd~~-----~~~~~~~~~~~~-~~v~~~~~~~-----------~~l~s~~-~dg~i~iwd~~~ 285 (371)
..||.++.|.+. ...++..++.|. .+-.|.-|.. .++++++ .+..+++|.-..
T Consensus 254 ----~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 254 ----ISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP 324 (1283)
T ss_pred ----ecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccc
Confidence 778877666542 344566677776 3333333541 1344444 456788998443
No 448
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=84.42 E-value=49 Score=33.48 Aligned_cols=137 Identities=9% Similarity=0.066 Sum_probs=90.2
Q ss_pred CeEEEEEcCCCC--EEEEEe-----------CCCcEEEEEC-CCCc---eEEEEeCCCeeEEEeecCCEEEEecCCcEEE
Q 041206 98 AVTNVGLPSGSN--KLYSGS-----------RDGRVSVWDR-DSGR---CVNVITNGAEIGCLISEGSWVFLGLPNAVKS 160 (371)
Q Consensus 98 ~V~~~~~~~~~~--~l~s~~-----------~dg~v~iwd~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (371)
.|..+.|+.... +++.+. .+|.++.|++ ..|+ .+.......++.++++-..+++++....+++
T Consensus 879 ~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~LagvG~~l~~ 958 (1205)
T KOG1898|consen 879 SVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAGVGRFLRL 958 (1205)
T ss_pred heeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEecccEEEE
Confidence 466666765322 344432 2344666664 2344 3333344677888888888999999999999
Q ss_pred EEeCCC-------------CeeEEEEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc---ceEEEEecCCceeEe
Q 041206 161 WRVNAA-------------SVNALVVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL---WFCSLSSSNDTRWNS 224 (371)
Q Consensus 161 ~~~~~~-------------~v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~l~~ 224 (371)
|++-.. .|..+.+....+++|...-.|.++..+... ..+..+-... .|+++.+-..+.++.
T Consensus 959 YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~---n~l~~fadD~~pR~Vt~~~~lD~~tvag 1035 (1205)
T KOG1898|consen 959 YDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRRED---NQLIVFADDPVPRHVTALELLDYDTVAG 1035 (1205)
T ss_pred eeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCC---CeEEEEeCCCccceeeEEEEecCCceee
Confidence 999665 577778877888888877777665554433 2333444333 788888888778888
Q ss_pred cccceeeeeCCCeEEEEECC
Q 041206 225 KEEAAVFEFCGHTTRTWNLD 244 (371)
Q Consensus 225 ~~~~~~~~~~dg~i~iwd~~ 244 (371)
+ ..=|.+.+..+.
T Consensus 1036 a-------DrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1036 A-------DRFGNIAVVRIP 1048 (1205)
T ss_pred c-------cccCcEEEEECC
Confidence 7 777777766554
No 449
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.32 E-value=45 Score=32.89 Aligned_cols=91 Identities=12% Similarity=0.060 Sum_probs=55.3
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceEEEEeC-CCeeEEEee-cCCEEEEecCCcEEEEEeCCCCeeEEE
Q 041206 96 KKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSG-RCVNVITN-GAEIGCLIS-EGSWVFLGLPNAVKSWRVNAASVNALV 172 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~v~~~~ 172 (371)
.-.|..+.++|+|++||-.|..| |.|-.+... -....+.. ...+.|-.. -+..++... ....|..+.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~---------~~~~i~qv~ 153 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSN---------SSLEIKQVR 153 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCC---------CCceEEEEE
Confidence 34799999999999999998866 555554321 11111222 122232221 122222111 122577888
Q ss_pred EeCC-----EEEEEeCCCeEEEEeccCCC
Q 041206 173 VNND-----LLFAGSEGGVISVWKGTFVA 196 (371)
Q Consensus 173 ~~~~-----~l~~~~~dg~v~iwd~~~~~ 196 (371)
|+|. .|++-+.|+.+++||+....
T Consensus 154 WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 154 WHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 9875 88999999999999998654
No 450
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.25 E-value=32 Score=31.15 Aligned_cols=105 Identities=10% Similarity=-0.028 Sum_probs=60.9
Q ss_pred CeeEEEEeCC-EEEEEeCCCeEEEEeccCCCCcce--eeEEEecC--c-ceEEEEecCCceeEecccceeeeeCCCeEEE
Q 041206 167 SVNALVVNND-LLFAGSEGGVISVWKGTFVANPFK--QVASIRAP--L-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRT 240 (371)
Q Consensus 167 ~v~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~~~--~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~i 240 (371)
.+.++.+.++ .++..+..|.+..= ...+. .++ ........ . .+.++.+.+++.++.+ +..|.+..
T Consensus 282 ~l~~v~~~~dg~l~l~g~~G~l~~S-~d~G~-~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-------G~~G~v~~ 352 (398)
T PLN00033 282 RIQNMGWRADGGLWLLTRGGGLYVS-KGTGL-TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA-------GGSGILLR 352 (398)
T ss_pred ceeeeeEcCCCCEEEEeCCceEEEe-cCCCC-cccccceeecccCCCCcceEEEEEcCCCcEEEE-------ECCCcEEE
Confidence 4677777776 55556677776443 22221 000 22222222 2 5889999998887777 78887766
Q ss_pred EECCCceEEEEe---ecCCCcEEEEEEc-CCeEEEEeCCCcEEEE
Q 041206 241 WNLDNLECVQTL---KGHSDTVTSLLFW-DEYLFSSSLDETIKIW 281 (371)
Q Consensus 241 wd~~~~~~~~~~---~~~~~~v~~~~~~-~~~l~s~~~dg~i~iw 281 (371)
.. ..++.-... ..-....+.+.|. ++..+..+.+|.|.-|
T Consensus 353 s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 353 ST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred eC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 53 333332221 2234567888876 5677777788876554
No 451
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=83.58 E-value=50 Score=32.87 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=25.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeCCC
Q 041206 107 GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGA 138 (371)
Q Consensus 107 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 138 (371)
.+..++.++.|+.+.-.|.++|+....+....
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G 290 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLCEDFGNNG 290 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEEEEecCCC
Confidence 34578888899999999999999988776543
No 452
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.16 E-value=51 Score=32.02 Aligned_cols=51 Identities=12% Similarity=-0.020 Sum_probs=38.4
Q ss_pred CCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCC
Q 041206 183 EGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDN 245 (371)
Q Consensus 183 ~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~ 245 (371)
.--.|+||+.... ++..+.-.. .+-.+.|+.+..|++- ..+|++++|++-.
T Consensus 62 a~~~I~If~~sG~-----lL~~~~w~~~~lI~mgWs~~eeLI~v-------~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 62 ARPYIRIFNISGQ-----LLGRILWKHGELIGMGWSDDEELICV-------QKDGTVHVYGLLG 113 (829)
T ss_pred cceeEEEEecccc-----chHHHHhcCCCeeeecccCCceEEEE-------eccceEEEeecch
Confidence 3446888887663 444444333 8889999999888888 9999999999863
No 453
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=82.10 E-value=29 Score=33.99 Aligned_cols=113 Identities=17% Similarity=0.121 Sum_probs=66.5
Q ss_pred CeeEEEEeCCEEEEEeCCCeEEEEeccCCCC-cceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECC
Q 041206 167 SVNALVVNNDLLFAGSEGGVISVWKGTFVAN-PFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLD 244 (371)
Q Consensus 167 ~v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~ 244 (371)
.+.++.+++.-+..|..||++-.|--..... ..++...+.... ++.+.++..| ++.+ +.+|.|.++...
T Consensus 583 ~v~~l~~ss~Slgagl~dgt~a~y~rap~gSwd~ep~~~~~~g~lPvrsla~~ed--~~wa-------s~gG~V~vi~~t 653 (925)
T KOG3522|consen 583 SVKLLLFSSGSLGAGLIDGTLAVYGRAPSGSWDGEPNISIPTGSLPVRSLAFQED--FVWA-------SEGGCVHVIPST 653 (925)
T ss_pred hhhhhhccccccccCccCCccccccCCCCCCCCCCCccccccCCccccchhhhhc--eeee-------ecCCceEEEech
Confidence 5667777776666677777766653221110 001222222233 7777777664 4445 789999999998
Q ss_pred CceEEEEeec---CCCcEEEEEEcCCeEEEEe-CCCcEEEEEccCCCC
Q 041206 245 NLECVQTLKG---HSDTVTSLLFWDEYLFSSS-LDETIKIWLYTHTKN 288 (371)
Q Consensus 245 ~~~~~~~~~~---~~~~v~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~ 288 (371)
+......+.. |...|+.+.+.++-+..+- ....+++++..+..+
T Consensus 654 t~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhtetl~h 701 (925)
T KOG3522|consen 654 TFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTETLWH 701 (925)
T ss_pred hccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEecccccCC
Confidence 8666555543 4558888888865444433 334566666544444
No 454
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=81.33 E-value=27 Score=28.17 Aligned_cols=89 Identities=10% Similarity=0.068 Sum_probs=49.5
Q ss_pred CCCEEEEEeCCC--cEEEEECCCCceEEEEeCCC-eeE--EEeecCCE--EEEecCCcEEEEEeCCC----------Cee
Q 041206 107 GSNKLYSGSRDG--RVSVWDRDSGRCVNVITNGA-EIG--CLISEGSW--VFLGLPNAVKSWRVNAA----------SVN 169 (371)
Q Consensus 107 ~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~-~~~--~~~~~~~~--~~~~~~~~i~~~~~~~~----------~v~ 169 (371)
++.++.+.+.-| .|++||+.+|+.+..-+... .+. -+.--++. ..+-.++.-..+|..+- .=.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 567777776543 69999999999887765541 110 01111222 23344555556665543 334
Q ss_pred EEEEeCCEEEEEeCCCeEEEEeccCC
Q 041206 170 ALVVNNDLLFAGSEGGVISVWKGTFV 195 (371)
Q Consensus 170 ~~~~~~~~l~~~~~dg~v~iwd~~~~ 195 (371)
.++.+...|+.+.....++.-|.++.
T Consensus 135 gLt~d~~~LimsdGsatL~frdP~tf 160 (262)
T COG3823 135 GLTSDDKNLIMSDGSATLQFRDPKTF 160 (262)
T ss_pred eeecCCcceEeeCCceEEEecCHHHh
Confidence 44444445555555556666666655
No 455
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.04 E-value=34 Score=29.18 Aligned_cols=181 Identities=14% Similarity=0.076 Sum_probs=103.0
Q ss_pred CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc--ceEEEEecCCceeEecccceeeeeCCCeEEEEE
Q 041206 167 SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL--WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWN 242 (371)
Q Consensus 167 ~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd 242 (371)
.+.++.|+|+ .|++......-.++=-..+ +.+.++.-.. ....+.+..+|+++.+ --.++.+.++.
T Consensus 87 nvS~LTynp~~rtLFav~n~p~~iVElt~~G----dlirtiPL~g~~DpE~Ieyig~n~fvi~------dER~~~l~~~~ 156 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKPAAIVELTKEG----DLIRTIPLTGFSDPETIEYIGGNQFVIV------DERDRALYLFT 156 (316)
T ss_pred cccceeeCCCcceEEEecCCCceEEEEecCC----ceEEEecccccCChhHeEEecCCEEEEE------ehhcceEEEEE
Confidence 4899999998 6666665555555543444 5555554433 5567778777775443 04567777776
Q ss_pred CCCceEEE-------Ee---ecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC--------------cceecceE
Q 041206 243 LDNLECVQ-------TL---KGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN--------------NAELSSLF 296 (371)
Q Consensus 243 ~~~~~~~~-------~~---~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~--------------~~~~~~~~ 296 (371)
+.....+. .+ ...+...-.++|+ +..|+.+=+-.-+.||.++.... .-.+..+.
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS 236 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS 236 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence 65432211 11 1114466788998 56777777777777777553331 01112233
Q ss_pred EE-EecCCCCEEEEecCCCeEEEEEcCCcceeeeec---C-------CceEEEEEeCCCCeEEeeCCCCcEEE
Q 041206 297 GM-LDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF---S-------RREVEVDQIGPAGLFFPGDASGSVGV 358 (371)
Q Consensus 297 ~~-~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~-------~~~v~~~~~s~~~~l~~~~~dg~i~i 358 (371)
+. +.+..+.+++-+.+++.+.-.|....- +..+. + -.....++..++|.|...|+-+-.+.
T Consensus 237 gl~~~~~~~~LLVLS~ESr~l~Evd~~G~~-~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPnlfy~ 308 (316)
T COG3204 237 GLEFNAITNSLLVLSDESRRLLEVDLSGEV-IELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPNLFYR 308 (316)
T ss_pred cceecCCCCcEEEEecCCceEEEEecCCCe-eeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCCccee
Confidence 33 334455577777788888888776542 33222 1 12345677877774444444444333
No 456
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.85 E-value=32 Score=35.38 Aligned_cols=25 Identities=20% Similarity=0.338 Sum_probs=22.4
Q ss_pred CCCC-eEEeeCCCCcEEEEEccccce
Q 041206 342 GPAG-LFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 342 s~~~-~l~~~~~dg~i~iw~~~~~~~ 366 (371)
++++ .++++..||.+.+||...++.
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 7778 999999999999999998754
No 457
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=80.77 E-value=26 Score=32.04 Aligned_cols=126 Identities=12% Similarity=0.206 Sum_probs=0.0
Q ss_pred eeeeCCCeEEEEEC-------CCceEEEEe-ecCCCcEEEEEEcCCeEEEEeCCCcEEEEE-------ccCCCC------
Q 041206 230 VFEFCGHTTRTWNL-------DNLECVQTL-KGHSDTVTSLLFWDEYLFSSSLDETIKIWL-------YTHTKN------ 288 (371)
Q Consensus 230 ~~~~~dg~i~iwd~-------~~~~~~~~~-~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd-------~~~~~~------ 288 (371)
++...|..+++|+. .++.....+ .++...+.++ ++.....|.|+.|+ +.+...
T Consensus 40 Aw~~~d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v------~lv~p~~G~v~f~~~I~~~l~~~t~~~i~l~gv 113 (422)
T PF08801_consen 40 AWIVVDNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV------GLVKPKTGRVVFWESISHLLVLATPSQISLLGV 113 (422)
T ss_dssp EEEEETTEEEEEE--SS--GG--EEEEE-----------SE------EEEE-TT-EEEEES-TT-TT--EEEE-------
T ss_pred EEEEECCEEEEEeccCCCCCcCcccccceecCCCCCCCceE------EEEEcCCCCEEecccchhhhhcCcccccccccc
Q ss_pred ----cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecC----------------------------CceE
Q 041206 289 ----NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFS----------------------------RREV 336 (371)
Q Consensus 289 ----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----------------------------~~~v 336 (371)
................. ++.+...|.|.....+....+.++.. ...|
T Consensus 114 ~~~~l~~~e~~~~~~~~~~~~-~I~~ts~GRif~~~~~~~~g~~~l~y~~~~~~~~~i~~~~~~~~~~~~p~~~~~~~~I 192 (422)
T PF08801_consen 114 SYSELLSGELSTSLTNVEPSG-FIVSTSTGRIFFLGIRDSNGKYELSYQQLSGRCSKINHTSSSIFSSLLPSFSDPRPKI 192 (422)
T ss_dssp -----------EEEEEEETTT-EEEEETT--EEEEEE-TTS-EEEEE-TT-----------------------------E
T ss_pred ceeeecCCceEEECCCCceEE-EEEECCCCeEEEEeCCCCCCcEEEEEEcCcCCccccccccCceeccccCCcccchhce
Q ss_pred EEEEeCCCC-eEEeeCCCCcEEEEEcc
Q 041206 337 EVDQIGPAG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 337 ~~~~~s~~~-~l~~~~~dg~i~iw~~~ 362 (371)
.+++..+.. .+++.+.+|.|.+|++.
T Consensus 193 ~~v~~d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 193 VQVAVDPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp EEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred eeEEecCCcCEEEEEeCCCcEEEEEEe
No 458
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=80.75 E-value=51 Score=31.10 Aligned_cols=46 Identities=11% Similarity=-0.066 Sum_probs=27.1
Q ss_pred ecCCCCEEEEecC-CCeEEEEEcCCcc--eeeee--cCCceEEEEEeCCCC
Q 041206 300 DAEAKPVLFSSGK-DSAIRLYELPSFK--LRARI--FSRREVEVDQIGPAG 345 (371)
Q Consensus 300 ~~~~~~~l~~~~~-d~~i~iwd~~~~~--~~~~~--~~~~~v~~~~~s~~~ 345 (371)
+.+...+++++++ -+.|.||.+..-. .++.+ ...+....++|-.|+
T Consensus 346 fn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdk 396 (671)
T PF15390_consen 346 FNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDK 396 (671)
T ss_pred eCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCC
Confidence 3344447776664 4678888875421 22222 245667788888777
No 459
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=80.33 E-value=49 Score=30.54 Aligned_cols=38 Identities=8% Similarity=0.039 Sum_probs=28.1
Q ss_pred eeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 041206 92 LNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGR 129 (371)
Q Consensus 92 l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 129 (371)
+...-..-..|+|.||+++|++--..|.|++++-.++.
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~ 62 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGE 62 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCc
Confidence 33344567899999999877776556999999865543
No 460
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=80.33 E-value=38 Score=29.30 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=32.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEec
Q 041206 107 GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGL 154 (371)
Q Consensus 107 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (371)
++++-++=+..|.+.-+|.++|+.......++....+.+.+.+++++.
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~G~llvVgm 259 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFAGDFAFVGL 259 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCcccceeCCEEEEEe
Confidence 556666666777777777777776666666556666666677776653
No 461
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=80.09 E-value=47 Score=30.20 Aligned_cols=107 Identities=13% Similarity=0.089 Sum_probs=52.8
Q ss_pred cccCCCCceeeccCcc------------cccceeEEEE-Eeeccceeeeeeeecce-eeccceeeCCc------cceEEE
Q 041206 13 HKHSEGGETMMSDDDD------------LMKGRAEERE-EMFGFGLAAMAIRVCNN-WISDSCVYGDK------CRFLHS 72 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d------------~~~~~~~~~~-~~h~~~v~~~~~~~~~~-~~~~~~~~~~~------~~~i~~ 72 (371)
..+||+|+++|.+.+. +.+|+.+... .... . ..+.|.+.+. ++-...-.... ...++.
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~-~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-F-SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-S-EEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-c-ceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 5689999999866433 3345554332 2111 1 1155655522 21111111111 444666
Q ss_pred EEeccCCCCccCCcee-eEeeeCccCC--eEEEEEcCCCCEEEEEeC---C-CcEEEEECCCC
Q 041206 73 WVHSVDGDNTTNSLAT-LMKLNGHKKA--VTNVGLPSGSNKLYSGSR---D-GRVSVWDRDSG 128 (371)
Q Consensus 73 ~~~~~~~~~~~~~~~~-~~~l~~h~~~--V~~~~~~~~~~~l~s~~~---d-g~v~iwd~~~~ 128 (371)
|. .....+. ...+.+.... ...+..++|+++|+..+. + ..+.+-+...+
T Consensus 207 ~~-------~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 207 HK-------LGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EE-------TTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EE-------CCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 66 2322222 3344443333 678889999998775432 2 34777777764
No 462
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=79.99 E-value=5.4 Score=20.78 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=20.7
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEE
Q 041206 110 KLYSGSRDGRVSVWDRDSGRCVNVI 134 (371)
Q Consensus 110 ~l~s~~~dg~v~iwd~~~~~~~~~~ 134 (371)
.++.++.+|.+...|.++|+.+..+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 6778888999999999999877543
No 463
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=79.55 E-value=5.1 Score=20.90 Aligned_cols=27 Identities=15% Similarity=-0.075 Sum_probs=20.9
Q ss_pred CceeEecccceeeeeCCCeEEEEECCCceEEEEe
Q 041206 219 DTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTL 252 (371)
Q Consensus 219 ~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~ 252 (371)
++.++.+ +.+|.+..+|.++|+.+..+
T Consensus 6 ~~~v~~~-------~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 6 DGTVYVG-------STDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CCEEEEE-------cCCCEEEEEEcccCcEEEEc
Confidence 3456666 88999999999998876543
No 464
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=79.46 E-value=15 Score=34.99 Aligned_cols=73 Identities=22% Similarity=0.268 Sum_probs=41.1
Q ss_pred eCCEEEEEeCCCeEEEEeccC---CCCcceee--------EEEe-----------cCc-ceEEEEecC-----CceeEec
Q 041206 174 NNDLLFAGSEGGVISVWKGTF---VANPFKQV--------ASIR-----------APL-WFCSLSSSN-----DTRWNSK 225 (371)
Q Consensus 174 ~~~~l~~~~~dg~v~iwd~~~---~~~~~~~~--------~~~~-----------~~~-~v~~~~~~~-----~~~l~~~ 225 (371)
++..++++..||.+....... ....+... ..+. ... ....++++. +..+++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 556888888899888887665 11110000 0000 011 334444444 3346777
Q ss_pred ccceeeeeCCCeEEEEECCCceEEEEee
Q 041206 226 EEAAVFEFCGHTTRTWNLDNLECVQTLK 253 (371)
Q Consensus 226 ~~~~~~~~~dg~i~iwd~~~~~~~~~~~ 253 (371)
+.|+.+++||+.+++++.+..
T Consensus 237 -------~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 237 -------SRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp -------ETTSEEEEEETTTTCEEEEEE
T ss_pred -------eCCCeEEEEECCCCeEEEEec
Confidence 999999999999999976553
No 465
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=79.42 E-value=36 Score=29.11 Aligned_cols=93 Identities=10% Similarity=0.068 Sum_probs=56.4
Q ss_pred CeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEeec-----CCCc
Q 041206 185 GVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKG-----HSDT 258 (371)
Q Consensus 185 g~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~ 258 (371)
..|++||..+. +-...-.+-. .|+++.|..+.+++.++..-+.+.....+..||..+.... .+.+ -.++
T Consensus 16 ~~lC~yd~~~~----qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgp 90 (281)
T PF12768_consen 16 PGLCLYDTDNS----QWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGP 90 (281)
T ss_pred CEEEEEECCCC----EeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCc
Confidence 46999998876 2222222333 8999999877776555433333336778899999876542 3332 2468
Q ss_pred EEEEEEc----CCeEEEEe-C--CCcEEEEE
Q 041206 259 VTSLLFW----DEYLFSSS-L--DETIKIWL 282 (371)
Q Consensus 259 v~~~~~~----~~~l~s~~-~--dg~i~iwd 282 (371)
|..+.+. .+..+.|. . +..|..||
T Consensus 91 v~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 91 VTALTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred EEEEEeeccCCceEEEeceecCCCceEEEEc
Confidence 8888874 23444443 2 33466776
No 466
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.13 E-value=30 Score=32.03 Aligned_cols=76 Identities=5% Similarity=-0.056 Sum_probs=44.3
Q ss_pred CeeEEEEeCC--EEEEEeCCCeEEEEec---------cCCCCcceeeEE-------Eec-Cc-ceEEEEecCCc----ee
Q 041206 167 SVNALVVNND--LLFAGSEGGVISVWKG---------TFVANPFKQVAS-------IRA-PL-WFCSLSSSNDT----RW 222 (371)
Q Consensus 167 ~v~~~~~~~~--~l~~~~~dg~v~iwd~---------~~~~~~~~~~~~-------~~~-~~-~v~~~~~~~~~----~l 222 (371)
.|..+..++. .++..+.+|.+.++=. +.++.. -..++ +.. .. .+...+|+|+. .+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~-v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKST-VNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCce-EEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 4666667666 6777777776555421 111100 00011 111 12 67788899865 25
Q ss_pred EecccceeeeeCCCeEEEEECCCceEEE
Q 041206 223 NSKEEAAVFEFCGHTTRTWNLDNLECVQ 250 (371)
Q Consensus 223 ~~~~~~~~~~~~dg~i~iwd~~~~~~~~ 250 (371)
..- +.|+.|++||+.....+.
T Consensus 184 ~iL-------~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 184 VLL-------TSDNVIRIYSLSEPTELY 204 (741)
T ss_pred EEE-------ecCcEEEEEecCCcchhh
Confidence 555 889999999998765543
No 467
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=76.94 E-value=9.7 Score=20.87 Aligned_cols=29 Identities=24% Similarity=0.548 Sum_probs=24.2
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCC
Q 041206 110 KLYSGSRDGRVSVWDRDSGRCVNVITNGA 138 (371)
Q Consensus 110 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 138 (371)
.++.++.+|.|.-.|.++|+.+..+....
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence 45666899999999999999998887644
No 468
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=76.71 E-value=10 Score=20.75 Aligned_cols=30 Identities=13% Similarity=0.258 Sum_probs=19.4
Q ss_pred CccCCeEEEEEcCCCCEEEEEe-CC--CcEEEE
Q 041206 94 GHKKAVTNVGLPSGSNKLYSGS-RD--GRVSVW 123 (371)
Q Consensus 94 ~h~~~V~~~~~~~~~~~l~s~~-~d--g~v~iw 123 (371)
.....-....|+|||+.|+-++ .+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3455677889999998877654 44 555555
No 469
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.71 E-value=65 Score=30.00 Aligned_cols=25 Identities=4% Similarity=-0.417 Sum_probs=16.1
Q ss_pred ceEEEEecCCce-eEecccceeeeeCCCeEEEE
Q 041206 210 WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTW 241 (371)
Q Consensus 210 ~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iw 241 (371)
.|..+..++.|. ++-. +.+|.+.++
T Consensus 105 eV~~vl~s~~GS~VaL~-------G~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALI-------GIKGLMVME 130 (741)
T ss_pred EEEEEEecCCCceEEEe-------cCCeeEEEE
Confidence 677788888875 4444 566665544
No 470
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=76.63 E-value=2.8 Score=40.93 Aligned_cols=92 Identities=14% Similarity=0.075 Sum_probs=51.5
Q ss_pred CCeEEEEeccCCCCc--ceeeEEEecC-c-ceEEEEecCC---c-eeEecccceeeeeCCCeEEEEECCCceEEEEeecC
Q 041206 184 GGVISVWKGTFVANP--FKQVASIRAP-L-WFCSLSSSND---T-RWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGH 255 (371)
Q Consensus 184 dg~v~iwd~~~~~~~--~~~~~~~~~~-~-~v~~~~~~~~---~-~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~ 255 (371)
-|.+.|||+..-... .+...+.... . .+.-+.|.|- . .+..+ -.++.+++....+... ..+.+|
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~-------~~~~~i~lL~~~ra~~-~l~rsH 223 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYG-------LKGGEIRLLNINRALR-SLFRSH 223 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeec-------cCCCceeEeeechHHH-HHHHhc
Confidence 367888887643221 1222222222 2 5556666662 2 25556 7788888876654222 344567
Q ss_pred CCcEEEEEEc-------------CCeEEEEeCCCcEEEEEc
Q 041206 256 SDTVTSLLFW-------------DEYLFSSSLDETIKIWLY 283 (371)
Q Consensus 256 ~~~v~~~~~~-------------~~~l~s~~~dg~i~iwd~ 283 (371)
...+..++|. |..++..+.||.+++|.+
T Consensus 224 s~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 224 SQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred CCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 7666665553 556677777777776663
No 471
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=75.58 E-value=8.6 Score=21.09 Aligned_cols=22 Identities=0% Similarity=-0.168 Sum_probs=19.7
Q ss_pred eCCCeEEEEECCCceEEEEeec
Q 041206 233 FCGHTTRTWNLDNLECVQTLKG 254 (371)
Q Consensus 233 ~~dg~i~iwd~~~~~~~~~~~~ 254 (371)
+.+|.++-.|.++|+.+-.++.
T Consensus 7 ~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 7 TPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp TTTSEEEEEETTTTSEEEEEES
T ss_pred CCCCEEEEEECCCCCEEEeeeC
Confidence 8999999999999999887763
No 472
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=75.14 E-value=21 Score=27.89 Aligned_cols=28 Identities=14% Similarity=0.130 Sum_probs=20.0
Q ss_pred ceEEEEecCCceeEecccceeeeeCCCeEEEEECCC
Q 041206 210 WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDN 245 (371)
Q Consensus 210 ~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~ 245 (371)
...+++||.||+++.+ .+..|.|.+..+
T Consensus 6 ~~~~l~WS~Dg~laV~--------t~~~v~IL~~~~ 33 (173)
T PF12657_consen 6 CPNALAWSEDGQLAVA--------TGESVHILDPQT 33 (173)
T ss_pred CCcCeeECCCCCEEEE--------cCCeEEEEeccC
Confidence 3468999999997765 355677775543
No 473
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=74.69 E-value=64 Score=28.92 Aligned_cols=83 Identities=10% Similarity=-0.096 Sum_probs=38.0
Q ss_pred CCCCeeEEEEeCC---EEEEEeC---CC-eEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-e-EecccceeeeeC
Q 041206 164 NAASVNALVVNND---LLFAGSE---GG-VISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-W-NSKEEAAVFEFC 234 (371)
Q Consensus 164 ~~~~v~~~~~~~~---~l~~~~~---dg-~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l-~~~~~~~~~~~~ 234 (371)
.+..+.-+.++|. .|+-|-. +. .-+||-+++.....+++..-.....+..=-|.|||. + +.+ ..-++.
T Consensus 186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~---~~~~~~ 262 (386)
T PF14583_consen 186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDS---YTPGGQ 262 (386)
T ss_dssp ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEE---EETTT-
T ss_pred cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEe---ecCCCC
Confidence 3445677888887 4444432 22 136676665443334443322212677778899985 2 211 001144
Q ss_pred CCeEEEEECCCceEE
Q 041206 235 GHTTRTWNLDNLECV 249 (371)
Q Consensus 235 dg~i~iwd~~~~~~~ 249 (371)
+..|.-+|+.+++..
T Consensus 263 ~~~i~~~d~~t~~~~ 277 (386)
T PF14583_consen 263 DFWIAGYDPDTGERR 277 (386)
T ss_dssp -EEEEEE-TTT--EE
T ss_pred ceEEEeeCCCCCCce
Confidence 567788888887654
No 474
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=73.46 E-value=54 Score=27.52 Aligned_cols=142 Identities=13% Similarity=0.032 Sum_probs=71.7
Q ss_pred eeeEeeeCccC-CeEEEEEcCCCCEEEEEe---CCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEE
Q 041206 87 ATLMKLNGHKK-AVTNVGLPSGSNKLYSGS---RDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWR 162 (371)
Q Consensus 87 ~~~~~l~~h~~-~V~~~~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 162 (371)
.++.-..+... .+.+.+++++++.+|... ....+.++.. +.........
T Consensus 13 ~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g------------------------- 65 (253)
T PF10647_consen 13 TPVPGALGEGGYDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTG------------------------- 65 (253)
T ss_pred eECCCCcCcCCccccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccC-------------------------
Confidence 34444444433 789999999998877655 2234444443 3322222111
Q ss_pred eCCCCeeEEEEeCC--EEEEEeCCCeEEEEe-ccCCCCcceeeEEEec--Cc-ceEEEEecCCce-eEecccceeeeeCC
Q 041206 163 VNAASVNALVVNND--LLFAGSEGGVISVWK-GTFVANPFKQVASIRA--PL-WFCSLSSSNDTR-WNSKEEAAVFEFCG 235 (371)
Q Consensus 163 ~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd-~~~~~~~~~~~~~~~~--~~-~v~~~~~~~~~~-l~~~~~~~~~~~~d 235 (371)
..+..-.|+++ ..++...+...+++. ...+. ........ .. .|..+.++|||. ++.- +....+
T Consensus 66 ---~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~---~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v----~~~~~~ 135 (253)
T PF10647_consen 66 ---GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT---GEPVEVDWPGLRGRITALRVSPDGTRVAVV----VEDGGG 135 (253)
T ss_pred ---CccccccccCCCCEEEEEcCCCceEEEEecCCCc---ceeEEecccccCCceEEEEECCCCcEEEEE----EecCCC
Confidence 12555566666 333333344445543 22221 11112222 22 799999999995 3322 000345
Q ss_pred CeEEEEECC---Cc------eEEEEeecCCCcEEEEEEc
Q 041206 236 HTTRTWNLD---NL------ECVQTLKGHSDTVTSLLFW 265 (371)
Q Consensus 236 g~i~iwd~~---~~------~~~~~~~~~~~~v~~~~~~ 265 (371)
+.|.+--+. .+ ..+.........+.++.|.
T Consensus 136 ~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 136 GRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred CeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 677766443 22 1112222335688899998
No 475
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=72.63 E-value=14 Score=20.42 Aligned_cols=17 Identities=6% Similarity=0.169 Sum_probs=8.9
Q ss_pred EEEEecCCCeEEEEEcC
Q 041206 306 VLFSSGKDSAIRLYELP 322 (371)
Q Consensus 306 ~l~~~~~d~~i~iwd~~ 322 (371)
.++.++.||.++.+|.+
T Consensus 23 ~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 23 RVYVGTGDGNLYALDAA 39 (40)
T ss_dssp EEEEE-TTSEEEEEETT
T ss_pred EEEEEcCCCEEEEEeCC
Confidence 45555555666555544
No 476
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.90 E-value=81 Score=28.86 Aligned_cols=94 Identities=6% Similarity=0.029 Sum_probs=57.5
Q ss_pred CCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEE
Q 041206 164 NAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRT 240 (371)
Q Consensus 164 ~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~i 240 (371)
..++|.++.|+++ .+++--.+.+|.+++............+.+..+ .|....|+....++.- +..| +-+
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i-------~~~G-~e~ 136 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFI-------TDQG-IEF 136 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEE-------ecCC-eEE
Confidence 4568999999998 889999999999999855432222333334444 6889999887555443 3333 344
Q ss_pred EECCC-ceEEEEeecCCCcEEEEEEc
Q 041206 241 WNLDN-LECVQTLKGHSDTVTSLLFW 265 (371)
Q Consensus 241 wd~~~-~~~~~~~~~~~~~v~~~~~~ 265 (371)
|.... .+.++..+.|...|.--.|.
T Consensus 137 y~v~pekrslRlVks~~~nvnWy~yc 162 (657)
T KOG2377|consen 137 YQVLPEKRSLRLVKSHNLNVNWYMYC 162 (657)
T ss_pred EEEchhhhhhhhhhhcccCccEEEEc
Confidence 43322 12233344555555555555
No 477
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=71.85 E-value=42 Score=26.19 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=26.2
Q ss_pred ceEEEEEeCCCC-------eEEeeCCCCcEEEEEccc
Q 041206 334 REVEVDQIGPAG-------LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 334 ~~v~~~~~s~~~-------~l~~~~~dg~i~iw~~~~ 363 (371)
..+..++|||-| .|++.+.+|.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 489999999955 899999999999998764
No 478
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=71.54 E-value=1.3e+02 Score=31.22 Aligned_cols=137 Identities=10% Similarity=0.066 Sum_probs=0.0
Q ss_pred CcEEEEEC----------CCCceEEEEeC---CCeeEEEeecCCEEEEecCCcEEEEEe-CCCCeeEEEEeCC-------
Q 041206 118 GRVSVWDR----------DSGRCVNVITN---GAEIGCLISEGSWVFLGLPNAVKSWRV-NAASVNALVVNND------- 176 (371)
Q Consensus 118 g~v~iwd~----------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~v~~~~~~~~------- 176 (371)
|.+.|+|+ .+...++.+.. .+++..++--..+++.+....|.+|++ +...+..++|..-
T Consensus 1065 Gr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~GqKI~v~~l~r~~~ligVaFiD~~~yv~s~ 1144 (1366)
T KOG1896|consen 1065 GRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQGQKIIVRKLDRDSELIGVAFIDLPLYVHSM 1144 (1366)
T ss_pred ccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEeccEEEEccCcEEEEEEeccCCcceeeEEeccceeEEeh
Q ss_pred -----EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc---ceEEEEecCCce---eEecccceeeeeCCCeEEEEECCC
Q 041206 177 -----LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL---WFCSLSSSNDTR---WNSKEEAAVFEFCGHTTRTWNLDN 245 (371)
Q Consensus 177 -----~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~---l~~~~~~~~~~~~dg~i~iwd~~~ 245 (371)
+++.|..-..|.+.-..... ..+..+.... .+.++.|--||. ++++ ..++.|++|-..-
T Consensus 1145 ~~vknlIl~gDV~ksisfl~fqeep---~rlsL~srd~~~l~v~s~EFLVdg~~L~flvs-------Da~rNi~vy~Y~P 1214 (1366)
T KOG1896|consen 1145 KVVKNLILAGDVMKSISFLGFQEEP---YRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVS-------DADRNIHVYMYAP 1214 (1366)
T ss_pred hhhhhheehhhhhhceEEEEEccCc---eEEEEeecCCchhhceeeeeEEcCCeeEEEEE-------cCCCcEEEEEeCC
Q ss_pred --------ceEEEEeecCCCcEEEEEE
Q 041206 246 --------LECVQTLKGHSDTVTSLLF 264 (371)
Q Consensus 246 --------~~~~~~~~~~~~~v~~~~~ 264 (371)
.++++.-.-|-+.+....|
T Consensus 1215 e~~eS~~G~RLv~radfhvg~~vs~m~ 1241 (1366)
T KOG1896|consen 1215 ENIESLSGQRLVRRADFHVGAHVSTMF 1241 (1366)
T ss_pred CCccccCcceeeeeeeeEeccceeeeE
No 479
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=70.18 E-value=32 Score=31.19 Aligned_cols=148 Identities=12% Similarity=0.107 Sum_probs=85.5
Q ss_pred ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEE--EEeecCCC----cEE-EEE-Ec-CCeEEEEeCCCcEE
Q 041206 210 WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECV--QTLKGHSD----TVT-SLL-FW-DEYLFSSSLDETIK 279 (371)
Q Consensus 210 ~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~--~~~~~~~~----~v~-~~~-~~-~~~l~s~~~dg~i~ 279 (371)
.+..+-..||++ ++.- ....+.++++.+.... +......+ .|+ .+. .. +.-++.++.||-|.
T Consensus 222 ~v~qllL~Pdg~~LYv~--------~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vs 293 (733)
T COG4590 222 DVSQLLLTPDGKTLYVR--------TGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVS 293 (733)
T ss_pred chHhhEECCCCCEEEEe--------cCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCcee
Confidence 777888899997 3332 3367888888654321 11111111 122 111 12 55788889999888
Q ss_pred EEE-ccCCCC--ccee-------cceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEE
Q 041206 280 IWL-YTHTKN--NAEL-------SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFF 348 (371)
Q Consensus 280 iwd-~~~~~~--~~~~-------~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~ 348 (371)
-|= .+.... ..++ ..+....-....+-+++-+.+|++.++.....+.+..-..-..+.-+++||++ +++
T Consensus 294 QWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll 373 (733)
T COG4590 294 QWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLL 373 (733)
T ss_pred eeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchhe
Confidence 774 332221 1111 11111222223345777788888888876655544333334467788999999 766
Q ss_pred eeCCCCcEEEEEccccce
Q 041206 349 PGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 349 ~~~~dg~i~iw~~~~~~~ 366 (371)
+- ..|.++++.+++..+
T Consensus 374 ~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 374 SE-DQGKIRLAQLENRNP 390 (733)
T ss_pred ee-cCCceEEEEecCCCC
Confidence 65 467999999987543
No 480
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=69.44 E-value=74 Score=27.46 Aligned_cols=193 Identities=12% Similarity=0.059 Sum_probs=0.0
Q ss_pred eEEEEeCC--EEEEEeCCCeEEEEecc-------CCCCcceeeEEEe------cCcceEEEEecCCceeEecc------c
Q 041206 169 NALVVNND--LLFAGSEGGVISVWKGT-------FVANPFKQVASIR------APLWFCSLSSSNDTRWNSKE------E 227 (371)
Q Consensus 169 ~~~~~~~~--~l~~~~~dg~v~iwd~~-------~~~~~~~~~~~~~------~~~~v~~~~~~~~~~l~~~~------~ 227 (371)
+.|+++|. +-++....+...+||.. .. ..+.++. .....+.+.|+....+.... .
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~----~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQD----PLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCCcccccCCcc----ceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Q ss_pred ceeeeeCCCeEEEEECCCceE------EEEeecCCCcEE-EEEEc-----CCeEEEEeCCCcEEEEE-------------
Q 041206 228 AAVFEFCGHTTRTWNLDNLEC------VQTLKGHSDTVT-SLLFW-----DEYLFSSSLDETIKIWL------------- 282 (371)
Q Consensus 228 ~~~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~v~-~~~~~-----~~~l~s~~~dg~i~iwd------------- 282 (371)
..+++++||+|.-|...-... +..=......|+ .+++- ..+.++--..++|.+||
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Q ss_pred ----------ccCCCCcceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecC---CceEEEEEeCCCC----
Q 041206 283 ----------YTHTKNNAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFS---RREVEVDQIGPAG---- 345 (371)
Q Consensus 283 ----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~---- 345 (371)
+........+ -++..........=+.|..-|.|-+||+.. .+++++.+ -...+.|+..|-.
T Consensus 182 DP~iPagyAPFnIqnig~~l-yVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTL-YVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred CCCCCCCCCCcceEEECCeE-EEEEEecCCcccccccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeChhhhCCC
Q ss_pred ---eEEeeCCCCcEEEEEcccccee
Q 041206 346 ---LFFPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 346 ---~l~~~~~dg~i~iw~~~~~~~~ 367 (371)
+|+---.||+|..||..+++..
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCcee
No 481
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=67.13 E-value=89 Score=27.49 Aligned_cols=49 Identities=12% Similarity=-0.000 Sum_probs=33.6
Q ss_pred eEEEEecCCceeEecccceeeeeCCCeEEEEECCCceE---EEEe----ecCCCcEEEEEEcCC
Q 041206 211 FCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLEC---VQTL----KGHSDTVTSLLFWDE 267 (371)
Q Consensus 211 v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~---~~~~----~~~~~~v~~~~~~~~ 267 (371)
.++|+|.||++++++ ...|.|++++ ..+.. +..+ .........++++++
T Consensus 4 P~~~a~~pdG~l~v~-------e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-------ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEEEEETTSCEEEE-------ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred ceEEEEeCCCcEEEE-------eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 578999999998878 8899999999 43433 2222 123456788888863
No 482
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=67.04 E-value=95 Score=27.77 Aligned_cols=58 Identities=10% Similarity=0.068 Sum_probs=33.7
Q ss_pred CeeEEEEeCC-EEEEEe------------CCC-eEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEec
Q 041206 167 SVNALVVNND-LLFAGS------------EGG-VISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSK 225 (371)
Q Consensus 167 ~v~~~~~~~~-~l~~~~------------~dg-~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~ 225 (371)
....|+++++ .|.++. ..+ .|.+++-.++.........+...- ....+++.+++ ++++
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~ 87 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA 87 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe
Confidence 4677888887 555543 223 777776554432223333443333 66888998888 5555
No 483
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=66.87 E-value=30 Score=28.03 Aligned_cols=47 Identities=17% Similarity=0.223 Sum_probs=35.3
Q ss_pred EEEEecCCCeEEEEEcC--CcceeeeecCCceEEEEEeCCCC-eEEeeCC
Q 041206 306 VLFSSGKDSAIRLYELP--SFKLRARIFSRREVEVDQIGPAG-LFFPGDA 352 (371)
Q Consensus 306 ~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~ 352 (371)
.|+.+.....|.+|++. ..+++..+..-+.|..+.++..| +|+|--.
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEe
Confidence 34333556789999987 44567777778899999999999 8887643
No 484
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=64.43 E-value=86 Score=26.35 Aligned_cols=56 Identities=7% Similarity=-0.013 Sum_probs=40.7
Q ss_pred CCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEE----eC-CCCeEEeeCCCCcEEEE
Q 041206 304 KPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQ----IG-PAGLFFPGDASGSVGVW 359 (371)
Q Consensus 304 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~----~s-~~~~l~~~~~dg~i~iw 359 (371)
-..++.|.++|.|.|.|......+.+..-.+....+. |. -|.+|+.++.||.|++.
T Consensus 195 ~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 195 VSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred cceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 3479999999999999999988887776433222222 32 23388889999999874
No 485
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=64.31 E-value=17 Score=18.29 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=13.3
Q ss_pred EEEEEeCCCC-eEEeeCCCCcEEEE
Q 041206 336 VEVDQIGPAG-LFFPGDASGSVGVW 359 (371)
Q Consensus 336 v~~~~~s~~~-~l~~~~~dg~i~iw 359 (371)
...++++++| .+++=+....|++|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 3556666666 55555555555543
No 486
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=63.41 E-value=35 Score=23.09 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=31.6
Q ss_pred CeEEEEEcCCcceeeeecCCceEEEEEeCCCC--eEEeeCCCCcEEEEEccc
Q 041206 314 SAIRLYELPSFKLRARIFSRREVEVDQIGPAG--LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 314 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~--~l~~~~~dg~i~iw~~~~ 363 (371)
+.|..||..+.+. ....-...+.+.++|++ ..++....+.|++|+...
T Consensus 36 ~~Vvyyd~~~~~~--va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 36 GNVVYYDGKEVKV--VASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEEeCCEeEE--eeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 4566666544222 12233556889999998 666666789999998764
No 487
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=62.94 E-value=1.1e+02 Score=27.26 Aligned_cols=62 Identities=15% Similarity=0.005 Sum_probs=32.3
Q ss_pred ceEEEEecCCceeEecccc----ee---------eeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEE
Q 041206 210 WFCSLSSSNDTRWNSKEEA----AV---------FEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSS 272 (371)
Q Consensus 210 ~v~~~~~~~~~~l~~~~~~----~~---------~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~ 272 (371)
....+++.|||.|+.+... .. .....|.|.-+|..+++....-.++ .....++|+ ++++++-
T Consensus 125 ~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 125 SLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred cccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEc
Confidence 5778999999985443110 00 0011256666777655443222232 334577887 5555543
No 488
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=60.72 E-value=1.2e+02 Score=26.98 Aligned_cols=185 Identities=12% Similarity=0.070 Sum_probs=94.2
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeE-EEEeCCEEEEEeCCCeEE
Q 041206 110 KLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNA-LVVNNDLLFAGSEGGVIS 188 (371)
Q Consensus 110 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~-~~~~~~~l~~~~~dg~v~ 188 (371)
.++.+..+|.|.-.|.++++.+.......... .+.. +......++.++.++.+.
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~-------------------------~~~~~~~~~~G~i~~g~~~g~~y 124 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVA-------------------------QLSGPILGSDGKIYVGSWDGKLY 124 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcce-------------------------eccCceEEeCCeEEEecccceEE
Confidence 45555778888888888887665444321000 0000 111122688888888888
Q ss_pred EEeccCCCCcceeeEEEecCc--ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEeecCCC---cEE-EE
Q 041206 189 VWKGTFVANPFKQVASIRAPL--WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSD---TVT-SL 262 (371)
Q Consensus 189 iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~-~~ 262 (371)
.+|..++ +..-...... .+..-....++.++.+ +.++.+...|..+++.......... .+. ..
T Consensus 125 ~ld~~~G----~~~W~~~~~~~~~~~~~~v~~~~~v~~~-------s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~ 193 (370)
T COG1520 125 ALDASTG----TLVWSRNVGGSPYYASPPVVGDGTVYVG-------TDDGHLYALNADTGTLKWTYETPAPLSLSIYGSP 193 (370)
T ss_pred EEECCCC----cEEEEEecCCCeEEecCcEEcCcEEEEe-------cCCCeEEEEEccCCcEEEEEecCCccccccccCc
Confidence 8888776 4443333332 1222233334555555 6778888888888877655442211 000 00
Q ss_pred EEcCCeEEEEeC--CCcEEEEEccCCCCcc------eec--------ceE-EEEecCCCCEEEEecCCCeEEEEEcCCcc
Q 041206 263 LFWDEYLFSSSL--DETIKIWLYTHTKNNA------ELS--------SLF-GMLDAEAKPVLFSSGKDSAIRLYELPSFK 325 (371)
Q Consensus 263 ~~~~~~l~s~~~--dg~i~iwd~~~~~~~~------~~~--------~~~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 325 (371)
......++.+.. ++.+.-.|.......- ... .+. ...... + -+..++.++.+...|..+++
T Consensus 194 ~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~-~-~~~~~~~~g~~~~l~~~~G~ 271 (370)
T COG1520 194 AIASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVD-G-GVYAGSYGGKLLCLDADTGE 271 (370)
T ss_pred eeecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEEC-C-cEEEEecCCeEEEEEcCCCc
Confidence 112333343433 4444444433222100 000 000 001111 1 24566677888889999998
Q ss_pred eeeeecC
Q 041206 326 LRARIFS 332 (371)
Q Consensus 326 ~~~~~~~ 332 (371)
.+.++..
T Consensus 272 ~~W~~~~ 278 (370)
T COG1520 272 LIWSFPA 278 (370)
T ss_pred eEEEEec
Confidence 8888765
No 489
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=60.58 E-value=1e+02 Score=25.89 Aligned_cols=62 Identities=13% Similarity=0.021 Sum_probs=33.8
Q ss_pred cCCCCEEEEecCCCeEEEEE-cCCcceee-eec--CC-ceEEEEEeCCCC-eEEee---CCCCcEEEEEcc
Q 041206 301 AEAKPVLFSSGKDSAIRLYE-LPSFKLRA-RIF--SR-REVEVDQIGPAG-LFFPG---DASGSVGVWKWL 362 (371)
Q Consensus 301 ~~~~~~l~~~~~d~~i~iwd-~~~~~~~~-~~~--~~-~~v~~~~~s~~~-~l~~~---~~dg~i~iw~~~ 362 (371)
...+.+.+....+...+++. ...+.... .+. .. ..|..+++|||| +++.. ..++.|.+=-+.
T Consensus 74 d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 74 DPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred cCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence 33343444445555666663 33332221 111 12 289999999999 44333 346777776554
No 490
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=58.72 E-value=2e+02 Score=28.79 Aligned_cols=62 Identities=13% Similarity=0.044 Sum_probs=44.5
Q ss_pred EEEEecCCCCEEEEecCCCeEEEEEcCCcceeeee----cC----------------CceEEEEEeCCCC-eEEeeCCCC
Q 041206 296 FGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARI----FS----------------RREVEVDQIGPAG-LFFPGDASG 354 (371)
Q Consensus 296 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~----------------~~~v~~~~~s~~~-~l~~~~~dg 354 (371)
..+....-+.+++....||+|.++|..+.+.+... .. ..++..++|||++ .++.-..+|
T Consensus 263 ~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~ 342 (753)
T PF11635_consen 263 VSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDG 342 (753)
T ss_pred EEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEecCC
Confidence 33444455557888999999999999988666554 11 1233458899999 888888888
Q ss_pred cEE
Q 041206 355 SVG 357 (371)
Q Consensus 355 ~i~ 357 (371)
.+.
T Consensus 343 ~~~ 345 (753)
T PF11635_consen 343 KTK 345 (753)
T ss_pred Cce
Confidence 855
No 491
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=58.69 E-value=6 Score=19.10 Aligned_cols=11 Identities=18% Similarity=0.187 Sum_probs=8.5
Q ss_pred CcccCCCCcee
Q 041206 12 EHKHSEGGETM 22 (371)
Q Consensus 12 ~~~~sp~g~~l 22 (371)
-..|||+|+.+
T Consensus 5 ~t~FSp~Grl~ 15 (23)
T PF10584_consen 5 ITTFSPDGRLF 15 (23)
T ss_dssp TTSBBTTSSBH
T ss_pred ceeECCCCeEE
Confidence 35699999864
No 492
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=58.24 E-value=1.6e+02 Score=29.36 Aligned_cols=48 Identities=10% Similarity=0.021 Sum_probs=31.3
Q ss_pred eeeeCCCeEEEEECCCceEEEEee---cCCCcEEEEEEcCCeEEEEeCCCcE
Q 041206 230 VFEFCGHTTRTWNLDNLECVQTLK---GHSDTVTSLLFWDEYLFSSSLDETI 278 (371)
Q Consensus 230 ~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~l~s~~~dg~i 278 (371)
++...-|.|+.|+-.+.+. ...+ ...-.|..++|..+.++.++.||..
T Consensus 402 l~lte~g~Vy~w~s~ns~~-~~c~ftp~r~~~isdIa~~~N~~~~~t~dGc~ 452 (1267)
T KOG0783|consen 402 LVLTELGEVYEWDSKNSTR-TSCKFTPLRIFEISDIAWTANSLILCTRDGCW 452 (1267)
T ss_pred eeeccCCeEEEEecCCCce-eeeecccceeeehhhhhhccceEEEEecCcce
Confidence 3338889999999765332 2222 1123456778887888888999943
No 493
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=57.40 E-value=44 Score=22.78 Aligned_cols=37 Identities=5% Similarity=-0.044 Sum_probs=24.9
Q ss_pred EecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC
Q 041206 309 SSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG 345 (371)
Q Consensus 309 ~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~ 345 (371)
.+..+|.+.-||+.+++...-+..-.-.+.++++||+
T Consensus 32 e~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~ 68 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDE 68 (89)
T ss_dssp HT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTS
T ss_pred cCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCC
Confidence 3455788999999997754444444567899999999
No 494
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=57.23 E-value=2.2e+02 Score=28.66 Aligned_cols=110 Identities=11% Similarity=-0.055 Sum_probs=62.2
Q ss_pred CeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcce-ee-------EEE-ec-C--cceEEEEecCCce-eEeccccee
Q 041206 167 SVNALVVNND---LLFAGSEGGVISVWKGTFVANPFK-QV-------ASI-RA-P--LWFCSLSSSNDTR-WNSKEEAAV 230 (371)
Q Consensus 167 ~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~-~~-------~~~-~~-~--~~v~~~~~~~~~~-l~~~~~~~~ 230 (371)
+..+++|+|. .+|+....|...||++........ .. ..+ .. . ..-..+.|.++.. |+.
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv------ 220 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLV------ 220 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEE------
Confidence 6788999987 899999999999999932211101 11 111 00 0 1234666766543 444
Q ss_pred eeeCCCeEEEEECCCceEEEEe--ecCCCcEEEEEEcC---CeEEEEeCCCcEEEEEccC
Q 041206 231 FEFCGHTTRTWNLDNLECVQTL--KGHSDTVTSLLFWD---EYLFSSSLDETIKIWLYTH 285 (371)
Q Consensus 231 ~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~ 285 (371)
.....+.++|+++......+ ......|..+.-++ ++++.-. ...|...++..
T Consensus 221 --~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 221 --CNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred --EcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 34667888999876553211 22345677777662 2333222 24566666555
No 495
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=56.61 E-value=1.8e+02 Score=27.57 Aligned_cols=52 Identities=4% Similarity=-0.043 Sum_probs=40.3
Q ss_pred CCeEEEEEcCCcceeeeecC---CceEEEEEeCCCC-eEEeeCCCCcEEEEEccccc
Q 041206 313 DSAIRLYELPSFKLRARIFS---RREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 313 d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~ 365 (371)
.+.|.+.| .+.+.+..+.+ .+.|.++.|--+. +++|--.--=+.+.|+..++
T Consensus 303 ~N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDLsdP~ 358 (521)
T PF09826_consen 303 SNNLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDRAYLVTFRQVDPLFVIDLSDPA 358 (521)
T ss_pred eEEEEEEC-CCCcEeEEccccCCCceEEEEEEeCCeEEEEEEeecCceEEEECCCCC
Confidence 45788888 77777777764 7899999998888 88888665577888887654
No 496
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=55.25 E-value=71 Score=31.55 Aligned_cols=137 Identities=15% Similarity=0.126 Sum_probs=78.1
Q ss_pred EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc--ceEEEEecCCceeEecccceeeeeCCCeEEE--------EECCCc
Q 041206 177 LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL--WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRT--------WNLDNL 246 (371)
Q Consensus 177 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~i--------wd~~~~ 246 (371)
.+.+|+.++.+.++.-...... +......... .+.++.+++ +.+..| .-||++-. ||..
T Consensus 549 Tic~gtq~ssisissss~~s~k-e~~~~~~spe~~~v~~l~~ss-~Slgag-------l~dgt~a~y~rap~gSwd~e-- 617 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIK-EVTSEPPSPEHESVKLLLFSS-GSLGAG-------LIDGTLAVYGRAPSGSWDGE-- 617 (925)
T ss_pred cccccCccceeEEeeccCCccc-ceeccCCCCchhhhhhhhccc-cccccC-------ccCCccccccCCCCCCCCCC--
Confidence 7888999999999987633211 2222232222 677777776 334444 44444433 5544
Q ss_pred eEEEEeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCC-------cceecceEEEEecCCCCEEEEecCCCeEEEE
Q 041206 247 ECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKN-------NAELSSLFGMLDAEAKPVLFSSGKDSAIRLY 319 (371)
Q Consensus 247 ~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 319 (371)
+-..+..-..+|.+.++..+.++ ++.+|.+.++....... ......+..+...+.+-+++-. ....++.+
T Consensus 618 -p~~~~~~g~lPvrsla~~ed~~w-as~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafa-sG~~~rlf 694 (925)
T KOG3522|consen 618 -PNISIPTGSLPVRSLAFQEDFVW-ASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFA-SGDEERLF 694 (925)
T ss_pred -CccccccCCccccchhhhhceee-eecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEc-CCCEEEEe
Confidence 22223334567888877765544 55789999998655332 2233456666777777344333 33456666
Q ss_pred EcCCccee
Q 041206 320 ELPSFKLR 327 (371)
Q Consensus 320 d~~~~~~~ 327 (371)
+..+..-.
T Consensus 695 htetl~hl 702 (925)
T KOG3522|consen 695 HTETLWHL 702 (925)
T ss_pred cccccCCc
Confidence 66654433
No 497
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=54.04 E-value=2.2e+02 Score=28.80 Aligned_cols=72 Identities=13% Similarity=0.109 Sum_probs=44.9
Q ss_pred ceEEEEecCCcee-EecccceeeeeCCCeEEEEECCC--------ceE-------------E---EEeecCCCcEEEEEE
Q 041206 210 WFCSLSSSNDTRW-NSKEEAAVFEFCGHTTRTWNLDN--------LEC-------------V---QTLKGHSDTVTSLLF 264 (371)
Q Consensus 210 ~v~~~~~~~~~~l-~~~~~~~~~~~~dg~i~iwd~~~--------~~~-------------~---~~~~~~~~~v~~~~~ 264 (371)
.|.|+....+|++ ++| ..| +.+|.+.- .++ + ..+.-|...|..++.
T Consensus 183 nV~civs~e~GrIFf~g-------~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~v 253 (1263)
T COG5308 183 NVRCIVSEEDGRIFFGG-------END--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAV 253 (1263)
T ss_pred eeEEEEeccCCcEEEec-------CCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheee
Confidence 6888888889984 555 444 66776531 000 0 112235567777777
Q ss_pred c--CCeEEEEeCCCcEEEEEccCCCCcc
Q 041206 265 W--DEYLFSSSLDETIKIWLYTHTKNNA 290 (371)
Q Consensus 265 ~--~~~l~s~~~dg~i~iwd~~~~~~~~ 290 (371)
+ ...|.+-+....|+-|.++.....+
T Consensus 254 DqsRg~ly~Lr~kS~Vray~itkngl~g 281 (1263)
T COG5308 254 DQSRGLLYVLRKKSAVRAYSITKNGLVG 281 (1263)
T ss_pred cccccceeeecccceeeeEeeecccccc
Confidence 6 4577777777888888877665444
No 498
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=53.56 E-value=1.8e+02 Score=29.37 Aligned_cols=129 Identities=14% Similarity=0.207 Sum_probs=69.1
Q ss_pred eCCCeEEEEECCCceEEEEeecCCCcEEEEEEc---CC------------------eEEEEeCC---CcEEEEEccCCCC
Q 041206 233 FCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW---DE------------------YLFSSSLD---ETIKIWLYTHTKN 288 (371)
Q Consensus 233 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~---~~------------------~l~s~~~d---g~i~iwd~~~~~~ 288 (371)
+.|+.+.+|+..+++..+.+..-...|..+..- ++ +++..+.| |.+.+++....-.
T Consensus 99 T~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vAT~~e~~ilgvs~d~~T~Els~fnTgl~vs 178 (1263)
T COG5308 99 TNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVATEKEVMILGVSKDTKTGELSLFNTGLVVS 178 (1263)
T ss_pred EcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhhhhheeeEEEEEeccccceeEEEecceEEe
Confidence 569999999999766555444444444444432 11 22222322 2344443222211
Q ss_pred cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCc-----------------c----eeeeec----CCceEEEEEeCC
Q 041206 289 NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSF-----------------K----LRARIF----SRREVEVDQIGP 343 (371)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----------------~----~~~~~~----~~~~v~~~~~s~ 343 (371)
..-+ .+.+..+..+++++++|..| +.+|.+.-. . .+..+. +...|..++...
T Consensus 179 vqGi-nV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vDq 255 (1263)
T COG5308 179 VQGI-NVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVDQ 255 (1263)
T ss_pred ccCc-eeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeecc
Confidence 1112 34455566677688887776 667765310 0 111111 245677777766
Q ss_pred CC-eEEeeCCCCcEEEEEcccc
Q 041206 344 AG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 344 ~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
.. .|.+-+.-..|+-|.+...
T Consensus 256 sRg~ly~Lr~kS~Vray~itkn 277 (1263)
T COG5308 256 SRGLLYVLRKKSAVRAYSITKN 277 (1263)
T ss_pred cccceeeecccceeeeEeeecc
Confidence 55 7777777777887777543
No 499
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=51.23 E-value=73 Score=21.55 Aligned_cols=30 Identities=17% Similarity=0.338 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q 041206 97 KAVTNVGLPSGSNKLYSGS-RDGRVSVWDRD 126 (371)
Q Consensus 97 ~~V~~~~~~~~~~~l~s~~-~dg~v~iwd~~ 126 (371)
..-+.+.++|++++|+.++ ..+.|.++...
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 4457889999998887776 56789888764
No 500
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=51.10 E-value=1.6e+02 Score=25.27 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=35.6
Q ss_pred ccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEe------CCCcEEEEECCCCc
Q 041206 66 KCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGS------RDGRVSVWDRDSGR 129 (371)
Q Consensus 66 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~------~dg~v~iwd~~~~~ 129 (371)
.|.-++.|+. ...+-..--.+=.+.|+++.|..+.+.++.|. ....+..||..+..
T Consensus 14 ~C~~lC~yd~--------~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 14 PCPGLCLYDT--------DNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred CCCEEEEEEC--------CCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 5777888882 22222222223456899999987777777764 35568888887664
Done!