Query 041206
Match_columns 371
No_of_seqs 608 out of 2728
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 07:42:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041206.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041206hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 1E-43 3.4E-48 309.4 37.1 290 29-362 19-320 (321)
2 1vyh_C Platelet-activating fac 100.0 2.4E-43 8.1E-48 317.6 34.7 278 35-362 101-410 (410)
3 1got_B GT-beta; complex (GTP-b 100.0 6E-42 2E-46 300.9 39.5 284 31-360 44-340 (340)
4 1nr0_A Actin interacting prote 100.0 8.6E-42 2.9E-46 322.7 43.4 334 13-363 65-522 (611)
5 2pbi_B Guanine nucleotide-bind 100.0 3.2E-41 1.1E-45 297.8 39.6 264 86-360 54-354 (354)
6 1nr0_A Actin interacting prote 100.0 4.1E-41 1.4E-45 318.1 41.6 328 14-365 154-569 (611)
7 2ymu_A WD-40 repeat protein; u 100.0 6.8E-41 2.3E-45 314.9 42.4 321 13-360 227-577 (577)
8 3frx_A Guanine nucleotide-bind 100.0 1.1E-40 3.8E-45 290.1 38.8 288 31-364 6-318 (319)
9 2ynn_A Coatomer subunit beta'; 100.0 5.6E-41 1.9E-45 290.1 36.4 245 86-368 3-264 (304)
10 2ynn_A Coatomer subunit beta'; 100.0 2.1E-40 7.1E-45 286.5 37.7 284 31-364 2-303 (304)
11 2hes_X YDR267CP; beta-propelle 100.0 2.7E-40 9.3E-45 289.1 37.9 294 30-363 2-328 (330)
12 3iz6_a 40S ribosomal protein R 100.0 2.8E-41 9.7E-46 301.1 31.9 272 83-365 53-377 (380)
13 4g56_B MGC81050 protein; prote 100.0 5.1E-41 1.7E-45 296.7 31.8 262 92-364 38-344 (357)
14 2ymu_A WD-40 repeat protein; u 100.0 1.8E-39 6.1E-44 305.2 44.2 323 13-363 186-539 (577)
15 4ery_A WD repeat-containing pr 100.0 1.2E-39 4.2E-44 282.8 39.7 282 31-362 12-311 (312)
16 3fm0_A Protein CIAO1; WDR39,SG 100.0 8.3E-40 2.8E-44 287.8 38.2 293 32-369 5-341 (345)
17 4gqb_B Methylosome protein 50; 100.0 2.6E-40 8.9E-45 290.1 32.8 272 13-366 36-334 (344)
18 4aow_A Guanine nucleotide-bind 100.0 8E-39 2.7E-43 280.6 37.4 291 30-365 26-339 (340)
19 2xzm_R RACK1; ribosome, transl 100.0 1.7E-38 5.7E-43 279.3 39.0 289 31-365 10-342 (343)
20 1got_B GT-beta; complex (GTP-b 100.0 1E-38 3.5E-43 280.3 37.6 247 86-366 45-304 (340)
21 1erj_A Transcriptional repress 100.0 2.1E-38 7E-43 283.9 39.1 275 40-365 62-391 (393)
22 1gxr_A ESG1, transducin-like e 100.0 8.1E-38 2.8E-42 273.7 41.5 301 13-362 15-336 (337)
23 1vyh_C Platelet-activating fac 100.0 4.2E-39 1.4E-43 289.9 33.2 243 87-367 99-373 (410)
24 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.6E-37 1.6E-41 279.8 42.7 301 33-364 109-443 (445)
25 3ow8_A WD repeat-containing pr 100.0 1.2E-37 4.3E-42 271.0 33.9 247 86-368 22-284 (321)
26 4gqb_B Methylosome protein 50; 100.0 5.5E-38 1.9E-42 275.4 30.3 253 93-369 27-295 (344)
27 1pgu_A Actin interacting prote 100.0 1.2E-36 4E-41 287.9 41.3 333 13-364 122-573 (615)
28 1r5m_A SIR4-interacting protei 100.0 1E-37 3.4E-42 281.7 32.2 314 13-362 51-424 (425)
29 3v7d_B Cell division control p 100.0 3.1E-36 1E-40 275.8 41.4 302 33-361 112-461 (464)
30 3dm0_A Maltose-binding peripla 100.0 6.5E-37 2.2E-41 293.8 38.2 286 32-362 372-692 (694)
31 3gre_A Serine/threonine-protei 100.0 3.6E-37 1.2E-41 279.8 33.8 314 13-360 33-437 (437)
32 2oaj_A Protein SNI1; WD40 repe 100.0 1.9E-36 6.4E-41 296.6 38.9 334 13-366 23-608 (902)
33 4g56_B MGC81050 protein; prote 100.0 1.1E-37 3.9E-42 275.3 27.5 267 13-326 48-346 (357)
34 3zwl_B Eukaryotic translation 100.0 7.8E-36 2.7E-40 264.3 39.2 285 34-365 24-348 (369)
35 4ery_A WD repeat-containing pr 100.0 6E-36 2E-40 259.5 37.1 248 83-368 10-273 (312)
36 3sfz_A APAF-1, apoptotic pepti 100.0 6.6E-37 2.2E-41 311.7 35.7 340 13-367 663-1120(1249)
37 3frx_A Guanine nucleotide-bind 100.0 3.3E-36 1.1E-40 261.9 35.1 246 85-365 6-269 (319)
38 1sq9_A Antiviral protein SKI8; 100.0 8.1E-37 2.8E-41 273.8 31.5 294 33-365 7-397 (397)
39 3k26_A Polycomb protein EED; W 100.0 2.6E-37 8.8E-42 273.6 27.6 276 37-362 13-365 (366)
40 3sfz_A APAF-1, apoptotic pepti 100.0 3E-36 1E-40 306.9 38.7 330 14-367 622-1038(1249)
41 4gga_A P55CDC, cell division c 100.0 1E-35 3.5E-40 268.8 37.7 255 65-365 122-397 (420)
42 3ei3_B DNA damage-binding prot 100.0 7.6E-36 2.6E-40 266.3 35.4 281 30-363 61-382 (383)
43 4e54_B DNA damage-binding prot 100.0 1.4E-37 4.8E-42 282.2 24.5 290 31-368 108-435 (435)
44 3odt_A Protein DOA1; ubiquitin 100.0 3.8E-35 1.3E-39 254.1 38.5 282 31-368 7-301 (313)
45 3vl1_A 26S proteasome regulato 100.0 7E-37 2.4E-41 276.3 27.9 300 12-363 61-419 (420)
46 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.8E-36 2.3E-40 262.8 33.3 248 84-364 3-284 (345)
47 2pm7_B Protein transport prote 100.0 5.6E-36 1.9E-40 257.8 31.8 239 89-363 2-285 (297)
48 4aez_A CDC20, WD repeat-contai 100.0 3.1E-35 1E-39 264.1 37.0 261 63-368 108-385 (401)
49 1pgu_A Actin interacting prote 100.0 4.1E-35 1.4E-39 277.3 39.0 329 13-363 166-614 (615)
50 2pm9_A Protein WEB1, protein t 100.0 2E-37 7E-42 279.3 21.6 309 12-364 17-415 (416)
51 2hes_X YDR267CP; beta-propelle 100.0 3.9E-35 1.3E-39 256.4 34.6 246 85-364 3-281 (330)
52 3i2n_A WD repeat-containing pr 100.0 3.8E-35 1.3E-39 258.8 33.3 285 35-365 11-355 (357)
53 1r5m_A SIR4-interacting protei 100.0 6.8E-35 2.3E-39 263.2 35.5 304 13-365 17-363 (425)
54 1erj_A Transcriptional repress 100.0 4.2E-35 1.4E-39 262.4 33.8 261 13-324 70-390 (393)
55 2xzm_R RACK1; ribosome, transl 100.0 4.4E-35 1.5E-39 257.5 33.2 248 85-365 10-287 (343)
56 2oaj_A Protein SNI1; WD40 repe 100.0 5.2E-35 1.8E-39 286.4 36.5 332 14-365 105-666 (902)
57 3iz6_a 40S ribosomal protein R 100.0 1.4E-35 4.8E-40 264.3 29.5 276 29-326 53-378 (380)
58 4ggc_A P55CDC, cell division c 100.0 3.2E-34 1.1E-38 249.0 36.9 269 46-365 29-317 (318)
59 4a11_B DNA excision repair pro 100.0 4.9E-35 1.7E-39 262.8 32.7 289 29-368 30-370 (408)
60 1p22_A F-BOX/WD-repeat protein 100.0 7E-35 2.4E-39 264.6 32.5 272 39-366 130-417 (435)
61 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.9E-34 1.7E-38 259.8 38.1 266 86-368 108-396 (445)
62 1k8k_C P40, ARP2/3 complex 41 100.0 1.1E-34 3.9E-39 257.3 32.7 282 38-365 4-363 (372)
63 3bg1_A Protein SEC13 homolog; 100.0 2.3E-35 7.8E-40 256.3 25.7 237 90-362 7-292 (316)
64 2pbi_B Guanine nucleotide-bind 100.0 1.3E-33 4.4E-38 249.1 36.9 266 32-320 54-354 (354)
65 1gxr_A ESG1, transducin-like e 100.0 8.5E-34 2.9E-38 248.1 35.3 282 40-367 7-300 (337)
66 4h5i_A Guanine nucleotide-exch 100.0 3.3E-34 1.1E-38 253.8 32.1 258 96-364 14-344 (365)
67 3mkq_A Coatomer beta'-subunit; 100.0 3.2E-33 1.1E-37 272.9 41.7 323 13-363 19-423 (814)
68 4aow_A Guanine nucleotide-bind 100.0 1.2E-33 4.2E-38 247.6 34.1 251 83-366 25-289 (340)
69 3jrp_A Fusion protein of prote 100.0 5.7E-34 2E-38 253.3 31.2 242 87-364 2-288 (379)
70 2pm9_A Protein WEB1, protein t 100.0 2.7E-34 9.2E-39 258.9 28.1 285 41-366 11-340 (416)
71 2j04_B YDR362CP, TAU91; beta p 100.0 3.9E-34 1.3E-38 263.3 29.5 314 32-364 124-518 (524)
72 3dwl_C Actin-related protein 2 100.0 1.1E-34 3.7E-39 258.2 23.9 277 37-361 6-377 (377)
73 3mkq_A Coatomer beta'-subunit; 100.0 7.2E-33 2.4E-37 270.5 37.3 284 32-364 3-303 (814)
74 3vl1_A 26S proteasome regulato 100.0 4.4E-33 1.5E-37 251.4 32.6 268 45-364 59-366 (420)
75 2j04_A TAU60, YPL007P, hypothe 100.0 1.4E-34 4.8E-39 260.8 22.2 283 13-351 21-349 (588)
76 3dm0_A Maltose-binding peripla 100.0 7.7E-33 2.6E-37 265.5 35.4 249 85-367 371-636 (694)
77 3f3f_A Nucleoporin SEH1; struc 100.0 3.9E-33 1.3E-37 244.6 30.5 248 89-366 4-340 (351)
78 2pm7_B Protein transport prote 100.0 4.6E-33 1.6E-37 239.6 30.3 242 36-323 3-285 (297)
79 3gre_A Serine/threonine-protei 100.0 5.5E-34 1.9E-38 258.8 25.1 244 84-367 50-363 (437)
80 3v7d_B Cell division control p 100.0 2.8E-32 9.7E-37 249.4 36.6 269 86-368 111-426 (464)
81 3dw8_B Serine/threonine-protei 100.0 1.4E-32 4.8E-37 250.1 33.5 256 94-362 26-445 (447)
82 3mmy_A MRNA export factor; mRN 100.0 7.3E-33 2.5E-37 245.0 30.5 284 27-361 24-344 (368)
83 2aq5_A Coronin-1A; WD40 repeat 100.0 9.5E-33 3.3E-37 247.9 30.5 266 64-366 53-345 (402)
84 3ei3_B DNA damage-binding prot 100.0 4.8E-32 1.6E-36 241.7 34.4 245 84-367 61-343 (383)
85 3odt_A Protein DOA1; ubiquitin 100.0 3.9E-32 1.3E-36 235.2 32.1 246 83-368 5-260 (313)
86 3zwl_B Eukaryotic translation 100.0 1.4E-31 4.9E-36 236.8 35.9 244 85-367 21-308 (369)
87 1yfq_A Cell cycle arrest prote 100.0 1E-31 3.5E-36 235.6 32.8 253 88-355 3-315 (342)
88 2j04_B YDR362CP, TAU91; beta p 100.0 6.6E-33 2.3E-37 255.1 22.7 240 95-364 132-429 (524)
89 1p22_A F-BOX/WD-repeat protein 100.0 1E-31 3.4E-36 243.8 29.8 276 14-343 138-434 (435)
90 3dwl_C Actin-related protein 2 100.0 4.6E-33 1.6E-37 247.7 20.5 236 91-362 6-280 (377)
91 3k26_A Polycomb protein EED; W 100.0 6.7E-32 2.3E-36 238.8 27.8 242 90-366 12-321 (366)
92 1k8k_C P40, ARP2/3 complex 41 100.0 1.6E-31 5.4E-36 237.1 30.2 271 13-327 14-365 (372)
93 1sq9_A Antiviral protein SKI8; 100.0 6.6E-32 2.3E-36 241.8 27.7 244 87-367 7-326 (397)
94 4e54_B DNA damage-binding prot 100.0 4.1E-32 1.4E-36 246.3 26.2 246 85-367 108-391 (435)
95 4h5i_A Guanine nucleotide-exch 100.0 8E-32 2.7E-36 238.5 27.4 263 13-286 20-344 (365)
96 3bg1_A Protein SEC13 homolog; 100.0 5.1E-32 1.8E-36 235.1 25.1 241 37-323 8-293 (316)
97 3mmy_A MRNA export factor; mRN 100.0 9.4E-31 3.2E-35 231.5 32.0 246 83-368 26-309 (368)
98 3i2n_A WD repeat-containing pr 100.0 1.6E-31 5.6E-36 235.6 26.1 241 88-364 10-292 (357)
99 3jro_A Fusion protein of prote 100.0 7.7E-32 2.6E-36 260.3 26.1 239 89-363 2-285 (753)
100 3vu4_A KMHSV2; beta-propeller 100.0 5.7E-30 2E-34 225.8 33.6 266 85-365 8-338 (355)
101 3vu4_A KMHSV2; beta-propeller 100.0 3.8E-30 1.3E-34 226.9 32.3 274 30-325 7-338 (355)
102 3jrp_A Fusion protein of prote 100.0 1.4E-30 4.7E-35 231.4 29.5 239 32-287 1-289 (379)
103 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3E-30 1E-34 235.1 32.4 240 92-363 98-391 (450)
104 4aez_A CDC20, WD repeat-contai 100.0 6.9E-30 2.3E-34 229.2 33.0 242 85-366 80-339 (401)
105 2xyi_A Probable histone-bindin 100.0 1.2E-30 4.2E-35 236.2 27.3 254 89-366 121-413 (430)
106 1l0q_A Surface layer protein; 100.0 2.2E-28 7.6E-33 218.5 37.6 256 63-367 7-279 (391)
107 4gq1_A NUP37; propeller, trans 100.0 4.5E-30 1.5E-34 229.6 25.3 237 92-362 85-388 (393)
108 3f3f_A Nucleoporin SEH1; struc 100.0 3.3E-29 1.1E-33 219.6 29.4 263 35-330 4-344 (351)
109 3lrv_A PRE-mRNA-splicing facto 100.0 4.2E-29 1.5E-33 219.3 29.6 258 61-364 51-334 (343)
110 3bws_A Protein LP49; two-domai 100.0 8.1E-28 2.8E-32 217.8 37.0 279 33-363 114-432 (433)
111 1yfq_A Cell cycle arrest prote 100.0 1.7E-28 6E-33 215.0 29.9 265 36-320 5-321 (342)
112 4a11_B DNA excision repair pro 100.0 1.3E-28 4.4E-33 220.9 29.6 258 86-368 33-328 (408)
113 2j04_A TAU60, YPL007P, hypothe 100.0 2.2E-29 7.6E-34 227.1 24.0 242 93-362 12-296 (588)
114 2aq5_A Coronin-1A; WD40 repeat 100.0 1.7E-28 5.9E-33 220.2 27.0 238 98-365 36-301 (402)
115 4gga_A P55CDC, cell division c 100.0 2.6E-27 8.8E-32 213.8 34.5 266 15-330 113-402 (420)
116 2w18_A PALB2, fancn, partner a 100.0 3.6E-28 1.2E-32 206.3 26.6 286 29-361 22-355 (356)
117 4ggc_A P55CDC, cell division c 100.0 8.7E-27 3E-31 202.0 36.1 232 98-368 27-278 (318)
118 3jro_A Fusion protein of prote 100.0 2.2E-28 7.4E-33 236.2 28.3 243 35-323 2-285 (753)
119 3dw8_B Serine/threonine-protei 100.0 4.3E-28 1.5E-32 220.4 28.1 270 40-322 26-445 (447)
120 2xyi_A Probable histone-bindin 100.0 1.2E-27 4E-32 216.7 30.3 257 36-325 122-412 (430)
121 2vdu_B TRNA (guanine-N(7)-)-me 100.0 8.3E-28 2.9E-32 219.0 29.5 252 97-361 5-337 (450)
122 3lrv_A PRE-mRNA-splicing facto 100.0 9.8E-28 3.3E-32 210.6 26.5 262 14-322 43-332 (343)
123 1l0q_A Surface layer protein; 100.0 4E-25 1.4E-29 197.4 40.8 285 29-366 19-345 (391)
124 2w18_A PALB2, fancn, partner a 100.0 1.3E-25 4.6E-30 190.6 28.9 205 95-321 110-355 (356)
125 3bws_A Protein LP49; two-domai 100.0 3.8E-25 1.3E-29 200.2 33.8 247 86-367 113-394 (433)
126 4gq1_A NUP37; propeller, trans 99.9 3.4E-26 1.2E-30 204.5 21.5 225 61-323 104-389 (393)
127 1nir_A Nitrite reductase; hemo 99.9 8.1E-24 2.8E-28 196.1 37.0 287 64-368 155-519 (543)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.5E-22 1.2E-26 179.6 31.4 263 30-345 103-409 (415)
129 1nir_A Nitrite reductase; hemo 99.9 7.2E-21 2.5E-25 176.3 36.5 298 11-332 141-523 (543)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 4.6E-22 1.6E-26 178.8 27.6 251 68-367 93-391 (415)
131 1ri6_A Putative isomerase YBHE 99.9 1.4E-20 4.8E-25 164.5 32.0 256 65-362 12-307 (343)
132 1k32_A Tricorn protease; prote 99.9 2.1E-21 7.2E-26 194.1 29.9 332 13-362 58-501 (1045)
133 1k32_A Tricorn protease; prote 99.9 1.5E-20 5.1E-25 188.0 32.3 326 14-366 21-464 (1045)
134 3u4y_A Uncharacterized protein 99.9 7.1E-20 2.4E-24 159.5 31.8 257 64-367 16-308 (331)
135 2ecf_A Dipeptidyl peptidase IV 99.9 9.1E-21 3.1E-25 183.2 27.8 307 42-364 36-460 (741)
136 1pby_B Quinohemoprotein amine 99.9 2.3E-20 7.8E-25 162.8 27.3 256 64-367 7-314 (337)
137 3vgz_A Uncharacterized protein 99.9 2.9E-19 1E-23 156.9 33.8 276 40-353 38-334 (353)
138 2ojh_A Uncharacterized protein 99.9 3.1E-20 1.1E-24 158.6 24.4 241 64-353 18-292 (297)
139 3vgz_A Uncharacterized protein 99.9 1.3E-19 4.3E-24 159.2 28.2 233 95-367 39-307 (353)
140 2z3z_A Dipeptidyl aminopeptida 99.9 2.8E-19 9.4E-24 171.9 29.5 255 97-365 82-437 (706)
141 2ecf_A Dipeptidyl peptidase IV 99.9 2.7E-19 9.4E-24 172.8 28.8 255 96-363 36-413 (741)
142 1xfd_A DIP, dipeptidyl aminope 99.9 1.2E-19 4.2E-24 174.8 25.3 269 45-363 19-393 (723)
143 3u4y_A Uncharacterized protein 99.8 1.3E-18 4.6E-23 151.4 28.3 224 103-366 4-255 (331)
144 1jmx_B Amine dehydrogenase; ox 99.8 2.4E-19 8.3E-24 157.1 23.7 224 101-367 4-329 (349)
145 1xfd_A DIP, dipeptidyl aminope 99.8 9.7E-19 3.3E-23 168.5 28.2 320 11-349 20-426 (723)
146 3hfq_A Uncharacterized protein 99.8 9.5E-18 3.2E-22 147.1 30.6 262 66-367 14-323 (347)
147 3o4h_A Acylamino-acid-releasin 99.8 1.8E-18 6.3E-23 162.4 23.6 246 96-362 21-314 (582)
148 2oit_A Nucleoporin 214KDA; NH2 99.8 2.5E-18 8.6E-23 155.1 22.4 158 94-287 90-280 (434)
149 3scy_A Hypothetical bacterial 99.8 1.5E-16 5.2E-21 140.2 33.5 264 65-367 24-343 (361)
150 2z3z_A Dipeptidyl aminopeptida 99.8 2.4E-17 8.1E-22 158.4 29.0 291 43-361 82-474 (706)
151 1z68_A Fibroblast activation p 99.8 1.4E-18 4.9E-23 167.2 20.3 294 47-365 20-445 (719)
152 2oit_A Nucleoporin 214KDA; NH2 99.8 4E-18 1.4E-22 153.8 20.7 209 96-324 36-279 (434)
153 1ri6_A Putative isomerase YBHE 99.8 4E-17 1.4E-21 142.5 26.1 218 110-362 7-261 (343)
154 2ojh_A Uncharacterized protein 99.8 2.6E-17 8.8E-22 140.4 23.5 212 113-366 17-261 (297)
155 1pby_B Quinohemoprotein amine 99.8 8.1E-17 2.8E-21 140.2 25.9 250 29-331 18-318 (337)
156 3hfq_A Uncharacterized protein 99.8 4.3E-15 1.5E-19 130.1 31.9 248 22-284 18-316 (347)
157 3pe7_A Oligogalacturonate lyas 99.8 9.6E-16 3.3E-20 136.3 27.8 270 82-364 16-383 (388)
158 1jof_A Carboxy-CIS,CIS-muconat 99.7 1.2E-15 4E-20 134.8 25.6 234 95-365 38-343 (365)
159 1q7f_A NHL, brain tumor CG1071 99.7 1.3E-14 4.3E-19 123.6 29.7 236 93-365 26-282 (286)
160 2oiz_A Aromatic amine dehydrog 99.7 3.1E-15 1.1E-19 131.7 26.5 257 66-368 29-341 (361)
161 3scy_A Hypothetical bacterial 99.7 3.7E-14 1.3E-18 124.9 33.1 287 30-342 37-360 (361)
162 3fvz_A Peptidyl-glycine alpha- 99.7 8.6E-15 2.9E-19 127.3 28.4 232 96-364 23-323 (329)
163 1jmx_B Amine dehydrogenase; ox 99.7 3.1E-15 1.1E-19 130.8 24.9 227 64-331 17-333 (349)
164 3o4h_A Acylamino-acid-releasin 99.7 9.8E-16 3.3E-20 143.9 22.0 252 42-323 21-315 (582)
165 1z68_A Fibroblast activation p 99.7 4.5E-16 1.5E-20 149.9 19.8 248 101-363 20-391 (719)
166 3c5m_A Oligogalacturonate lyas 99.7 5E-14 1.7E-18 125.4 25.7 268 83-362 17-381 (396)
167 2dg1_A DRP35, lactonase; beta 99.7 1E-12 3.5E-17 114.2 32.7 256 43-353 6-300 (333)
168 4a5s_A Dipeptidyl peptidase 4 99.6 7E-14 2.4E-18 134.9 27.0 302 45-365 19-451 (740)
169 1qks_A Cytochrome CD1 nitrite 99.6 1E-11 3.6E-16 114.9 39.0 286 64-368 173-543 (567)
170 3dsm_A Uncharacterized protein 99.6 7.8E-13 2.7E-17 114.8 29.6 251 64-367 13-305 (328)
171 3azo_A Aminopeptidase; POP fam 99.6 1.2E-13 4.2E-18 131.6 26.5 282 38-366 19-372 (662)
172 2xdw_A Prolyl endopeptidase; a 99.6 2.7E-13 9.3E-18 130.2 28.2 236 94-365 122-416 (710)
173 4a5s_A Dipeptidyl peptidase 4 99.6 2.6E-13 8.9E-18 130.9 26.3 255 98-362 18-397 (740)
174 3e5z_A Putative gluconolactona 99.6 1.8E-12 6.3E-17 110.7 28.2 237 86-368 17-291 (296)
175 2oiz_A Aromatic amine dehydrog 99.6 3.1E-12 1E-16 112.5 30.1 259 29-345 38-359 (361)
176 3pe7_A Oligogalacturonate lyas 99.6 2.2E-13 7.6E-18 121.0 22.8 238 30-287 18-331 (388)
177 1rwi_B Serine/threonine-protei 99.6 9.1E-13 3.1E-17 110.9 24.4 231 98-367 25-268 (270)
178 2gop_A Trilobed protease; beta 99.6 4.7E-12 1.6E-16 110.6 28.5 215 97-362 59-330 (347)
179 2bkl_A Prolyl endopeptidase; m 99.6 1.9E-13 6.5E-18 130.9 20.9 236 94-366 118-400 (695)
180 3dsm_A Uncharacterized protein 99.6 1.6E-11 5.4E-16 106.5 31.3 232 66-341 62-319 (328)
181 1jof_A Carboxy-CIS,CIS-muconat 99.6 2.3E-12 7.9E-17 113.6 25.8 234 13-285 45-341 (365)
182 3no2_A Uncharacterized protein 99.6 4.9E-12 1.7E-16 106.7 26.2 203 107-350 4-230 (276)
183 3c5m_A Oligogalacturonate lyas 99.6 2.4E-12 8.2E-17 114.5 25.3 220 45-287 38-331 (396)
184 1q7f_A NHL, brain tumor CG1071 99.5 3E-11 1E-15 102.5 28.8 229 43-326 30-283 (286)
185 1yr2_A Prolyl oligopeptidase; 99.5 2.3E-12 7.7E-17 124.4 23.0 237 94-366 160-444 (741)
186 2z2n_A Virginiamycin B lyase; 99.5 7.2E-10 2.5E-14 94.3 36.4 257 91-365 9-297 (299)
187 3azo_A Aminopeptidase; POP fam 99.5 1.4E-12 4.9E-17 124.2 21.3 232 90-362 17-322 (662)
188 2mad_H Methylamine dehydrogena 99.5 1.8E-10 6.3E-15 101.4 32.6 255 69-369 48-356 (373)
189 3fvz_A Peptidyl-glycine alpha- 99.5 3.5E-11 1.2E-15 104.4 27.1 209 43-286 91-323 (329)
190 2dg1_A DRP35, lactonase; beta 99.5 1.5E-11 5.1E-16 106.8 22.3 226 97-363 6-263 (333)
191 3q7m_A Lipoprotein YFGL, BAMB; 99.5 1.9E-10 6.4E-15 101.7 29.0 272 65-360 60-375 (376)
192 3hrp_A Uncharacterized protein 99.5 2.6E-10 8.8E-15 101.8 29.9 228 97-361 131-408 (409)
193 3sjl_D Methylamine dehydrogena 99.4 3.4E-10 1.2E-14 98.7 28.7 252 102-368 38-368 (386)
194 1qks_A Cytochrome CD1 nitrite 99.4 1.8E-10 6.3E-15 106.6 28.5 219 106-363 165-421 (567)
195 2gop_A Trilobed protease; beta 99.4 1.1E-10 3.6E-15 102.0 24.7 215 97-365 15-293 (347)
196 3e5z_A Putative gluconolactona 99.4 2.3E-10 8E-15 97.6 26.2 223 35-285 20-286 (296)
197 3no2_A Uncharacterized protein 99.4 4.7E-11 1.6E-15 100.7 20.9 181 174-368 3-200 (276)
198 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.2E-09 4.3E-14 93.7 29.6 235 93-364 14-300 (314)
199 1xip_A Nucleoporin NUP159; bet 99.4 1.7E-11 5.8E-16 107.3 17.7 156 98-271 39-230 (388)
200 3q7m_A Lipoprotein YFGL, BAMB; 99.4 6.6E-10 2.3E-14 98.2 26.3 247 107-368 52-342 (376)
201 1xip_A Nucleoporin NUP159; bet 99.3 8.7E-11 3E-15 102.8 19.2 170 167-349 39-230 (388)
202 2bkl_A Prolyl endopeptidase; m 99.3 4.4E-10 1.5E-14 107.6 25.9 274 9-326 69-400 (695)
203 1rwi_B Serine/threonine-protei 99.3 8.8E-10 3E-14 92.4 23.7 194 95-327 65-268 (270)
204 3c75_H MADH, methylamine dehyd 99.3 6.5E-10 2.2E-14 98.6 23.6 258 68-369 99-408 (426)
205 2qc5_A Streptogramin B lactona 99.3 4.1E-08 1.4E-12 83.4 33.6 252 93-361 16-298 (300)
206 3iuj_A Prolyl endopeptidase; h 99.3 4E-10 1.4E-14 107.8 23.1 238 94-366 126-408 (693)
207 3g4e_A Regucalcin; six bladed 99.3 9E-09 3.1E-13 87.7 28.6 218 91-351 7-261 (297)
208 3sjl_D Methylamine dehydrogena 99.3 6.5E-09 2.2E-13 90.7 26.9 257 68-344 59-384 (386)
209 2xdw_A Prolyl endopeptidase; a 99.3 1.7E-09 5.7E-14 103.9 25.5 188 167-365 126-370 (710)
210 2mad_H Methylamine dehydrogena 99.2 9.6E-08 3.3E-12 84.0 33.3 258 14-287 27-352 (373)
211 3dr2_A Exported gluconolactona 99.2 7.4E-09 2.5E-13 88.6 25.5 228 88-354 36-298 (305)
212 1mda_H Methylamine dehydrogena 99.2 1.1E-09 3.8E-14 95.6 20.4 243 83-368 53-351 (368)
213 2hz6_A Endoplasmic reticulum t 99.2 4.3E-11 1.5E-15 105.4 10.3 197 107-345 8-215 (369)
214 3hxj_A Pyrrolo-quinoline quino 99.2 1.2E-09 3.9E-14 94.6 19.1 214 108-366 107-327 (330)
215 1yiq_A Quinohemoprotein alcoho 99.2 6.7E-09 2.3E-13 98.8 24.5 249 108-368 70-510 (689)
216 2z2n_A Virginiamycin B lyase; 99.2 5.3E-07 1.8E-11 76.4 33.2 255 40-324 12-296 (299)
217 1kb0_A Quinohemoprotein alcoho 99.2 8.3E-09 2.9E-13 98.0 23.3 259 65-368 84-512 (677)
218 1yr2_A Prolyl oligopeptidase; 99.1 2.1E-08 7.1E-13 96.7 25.1 236 44-325 164-443 (741)
219 3hxj_A Pyrrolo-quinoline quino 99.1 1.8E-09 6.2E-14 93.4 15.9 241 100-361 23-282 (330)
220 2qe8_A Uncharacterized protein 99.1 4.6E-08 1.6E-12 85.2 24.5 234 86-354 9-312 (343)
221 2ghs_A AGR_C_1268P; regucalcin 99.1 3.2E-07 1.1E-11 79.2 29.3 213 98-353 50-293 (326)
222 1yiq_A Quinohemoprotein alcoho 99.1 8.4E-08 2.9E-12 91.3 27.4 264 64-350 76-536 (689)
223 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 7.4E-07 2.5E-11 76.2 29.5 192 95-323 69-299 (314)
224 2hz6_A Endoplasmic reticulum t 99.1 2.7E-11 9.3E-16 106.7 1.6 183 173-368 7-197 (369)
225 2iwa_A Glutamine cyclotransfer 99.0 5.1E-07 1.7E-11 74.6 25.3 185 168-365 23-239 (266)
226 4a2l_A BT_4663, two-component 99.0 1E-05 3.4E-10 78.7 36.5 258 95-365 213-528 (795)
227 2qc5_A Streptogramin B lactona 99.0 7.6E-06 2.6E-10 69.2 31.7 175 94-283 59-258 (300)
228 3hrp_A Uncharacterized protein 99.0 1.9E-06 6.5E-11 76.7 28.8 175 66-285 150-354 (409)
229 3g4e_A Regucalcin; six bladed 99.0 4.7E-06 1.6E-10 70.8 30.0 182 65-265 32-249 (297)
230 1kv9_A Type II quinohemoprotei 98.9 2E-07 6.7E-12 88.5 22.5 249 108-368 66-493 (668)
231 3c75_H MADH, methylamine dehyd 98.9 7.5E-07 2.6E-11 79.1 24.6 245 29-287 106-404 (426)
232 2iwa_A Glutamine cyclotransfer 98.9 2.4E-06 8.1E-11 70.6 24.9 200 85-324 8-238 (266)
233 3nok_A Glutaminyl cyclase; bet 98.9 9.8E-07 3.4E-11 72.1 22.2 169 168-350 57-253 (268)
234 4a2l_A BT_4663, two-component 98.9 3.5E-05 1.2E-09 74.9 36.4 251 96-366 262-574 (795)
235 3mbr_X Glutamine cyclotransfer 98.8 6.2E-06 2.1E-10 66.7 24.5 172 167-351 22-223 (243)
236 3nol_A Glutamine cyclotransfer 98.8 2.8E-06 9.5E-11 69.4 22.0 175 86-273 31-243 (262)
237 3dr2_A Exported gluconolactona 98.8 5.7E-06 2E-10 70.5 25.2 216 35-276 37-298 (305)
238 3nol_A Glutamine cyclotransfer 98.8 4.4E-06 1.5E-10 68.2 22.6 180 168-362 45-253 (262)
239 1kb0_A Quinohemoprotein alcoho 98.8 9.1E-07 3.1E-11 84.0 20.6 197 108-331 77-354 (677)
240 2ghs_A AGR_C_1268P; regucalcin 98.7 1.8E-05 6E-10 68.2 26.4 182 168-362 51-259 (326)
241 2ad6_A Methanol dehydrogenase 98.7 4.9E-06 1.7E-10 77.3 23.6 249 108-368 62-499 (571)
242 3v9f_A Two-component system se 98.7 0.00022 7.6E-09 69.1 36.1 255 97-365 66-394 (781)
243 3nok_A Glutaminyl cyclase; bet 98.7 4.7E-06 1.6E-10 68.1 19.7 166 86-265 43-243 (268)
244 2ece_A 462AA long hypothetical 98.7 0.00012 4.1E-09 64.6 29.0 219 106-351 93-399 (462)
245 3v9f_A Two-component system se 98.6 0.00016 5.4E-09 70.2 33.0 258 97-366 115-439 (781)
246 1mda_H Methylamine dehydrogena 98.6 2.7E-06 9.2E-11 74.2 18.5 211 28-264 52-364 (368)
247 1kv9_A Type II quinohemoprotei 98.6 4.3E-05 1.5E-09 72.5 28.2 213 108-332 117-497 (668)
248 1npe_A Nidogen, entactin; glyc 98.6 6.3E-05 2.2E-09 62.6 25.6 209 97-345 36-262 (267)
249 3iuj_A Prolyl endopeptidase; h 98.6 1.5E-05 5E-10 76.3 24.2 239 41-325 127-407 (693)
250 2qe8_A Uncharacterized protein 98.6 5E-06 1.7E-10 72.2 18.8 158 94-283 64-276 (343)
251 1w6s_A Methanol dehydrogenase 98.6 1.6E-05 5.6E-10 73.9 23.2 57 312-368 451-508 (599)
252 1flg_A Protein (quinoprotein e 98.6 2.7E-05 9.2E-10 72.5 23.8 56 313-368 465-521 (582)
253 2fp8_A Strictosidine synthase; 98.6 0.0002 6.7E-09 61.4 27.8 259 92-364 14-314 (322)
254 1npe_A Nidogen, entactin; glyc 98.6 0.00022 7.6E-09 59.2 27.5 188 168-367 38-242 (267)
255 3mbr_X Glutamine cyclotransfer 98.5 0.00015 5E-09 58.7 24.1 162 85-287 8-181 (243)
256 1flg_A Protein (quinoprotein e 98.5 0.00027 9.3E-09 65.8 29.3 70 275-345 465-540 (582)
257 2xzh_A Clathrin heavy chain 1; 98.5 0.00039 1.3E-08 58.3 26.7 258 64-364 33-333 (365)
258 2ad6_A Methanol dehydrogenase 98.5 0.00011 3.6E-09 68.4 25.1 225 108-345 115-518 (571)
259 2ece_A 462AA long hypothetical 98.5 5E-05 1.7E-09 67.0 21.2 185 177-363 98-352 (462)
260 1fwx_A Nitrous oxide reductase 98.4 0.0002 6.7E-09 65.5 25.4 245 111-363 18-361 (595)
261 2p4o_A Hypothetical protein; p 98.4 0.00087 3E-08 56.9 29.9 222 85-345 21-269 (306)
262 1k3i_A Galactose oxidase precu 98.3 0.00022 7.4E-09 67.7 22.7 231 101-366 190-500 (656)
263 1bpo_A Protein (clathrin); cla 98.2 0.0022 7.6E-08 56.0 28.5 227 102-364 71-332 (494)
264 2xe4_A Oligopeptidase B; hydro 98.2 0.00027 9.1E-09 68.1 22.3 188 98-321 175-398 (751)
265 1fwx_A Nitrous oxide reductase 98.2 0.00011 3.7E-09 67.2 17.9 129 237-366 255-434 (595)
266 3tc9_A Hypothetical hydrolase; 98.2 0.002 7E-08 57.5 26.0 226 98-362 138-429 (430)
267 2p4o_A Hypothetical protein; p 98.1 0.0021 7.3E-08 54.5 24.3 183 167-362 33-241 (306)
268 3qqz_A Putative uncharacterize 98.1 0.0028 9.6E-08 51.9 24.0 179 167-360 28-250 (255)
269 1w6s_A Methanol dehydrogenase 98.1 0.001 3.4E-08 62.0 22.1 196 108-331 62-350 (599)
270 4hw6_A Hypothetical protein, I 97.9 0.0097 3.3E-07 53.2 26.9 226 98-362 140-432 (433)
271 3v65_B Low-density lipoprotein 97.9 0.012 4E-07 51.8 27.3 186 167-364 117-319 (386)
272 3v65_B Low-density lipoprotein 97.8 0.014 4.7E-07 51.3 28.2 198 96-331 115-326 (386)
273 3v64_C Agrin; beta propeller, 97.7 0.018 6.1E-07 49.8 29.3 186 167-364 74-276 (349)
274 3v64_C Agrin; beta propeller, 97.7 0.022 7.7E-07 49.2 29.1 196 96-330 72-282 (349)
275 1ijq_A LDL receptor, low-densi 97.6 0.024 8.2E-07 48.2 27.1 191 167-365 31-240 (316)
276 3qqz_A Putative uncharacterize 97.5 0.025 8.6E-07 46.2 23.4 195 91-321 21-251 (255)
277 2fp8_A Strictosidine synthase; 97.4 0.044 1.5E-06 46.6 24.5 176 97-284 80-312 (322)
278 3sov_A LRP-6, low-density lipo 97.4 0.044 1.5E-06 46.6 25.1 188 168-365 37-240 (318)
279 3ei3_A DNA damage-binding prot 97.4 0.12 4.1E-06 52.1 26.8 173 177-361 846-1060(1158)
280 3kya_A Putative phosphatase; s 97.4 0.075 2.6E-06 47.9 26.4 234 98-365 140-477 (496)
281 2be1_A Serine/threonine-protei 97.3 0.049 1.7E-06 46.5 19.8 180 109-328 11-236 (339)
282 1xi4_A Clathrin heavy chain; a 97.3 0.021 7.3E-07 57.4 19.5 224 104-363 73-331 (1630)
283 3amr_A 3-phytase; beta-propell 97.3 0.073 2.5E-06 45.4 22.7 216 107-363 39-329 (355)
284 3p5b_L Low density lipoprotein 97.3 0.089 3E-06 46.3 29.6 198 95-331 110-328 (400)
285 1k3i_A Galactose oxidase precu 97.2 0.13 4.4E-06 48.6 23.7 208 97-312 243-530 (656)
286 3m0c_C LDL receptor, low-densi 97.1 0.21 7.3E-06 48.0 29.5 196 95-329 422-638 (791)
287 1n7d_A LDL receptor, low-densi 97.1 0.007 2.4E-07 57.6 13.4 192 167-366 407-617 (699)
288 3p5b_L Low density lipoprotein 97.1 0.14 4.8E-06 45.0 29.1 191 167-364 113-321 (400)
289 3tc9_A Hypothetical hydrolase; 97.0 0.12 4E-06 46.1 19.5 146 210-363 138-301 (430)
290 3amr_A 3-phytase; beta-propell 97.0 0.056 1.9E-06 46.1 16.3 125 233-360 47-207 (355)
291 2xe4_A Oligopeptidase B; hydro 97.0 0.047 1.6E-06 52.5 18.0 194 44-282 175-395 (751)
292 3m0c_C LDL receptor, low-densi 96.9 0.33 1.1E-05 46.8 28.3 191 167-364 425-633 (791)
293 2xbg_A YCF48-like protein; pho 96.8 0.19 6.5E-06 42.8 24.3 142 167-321 164-320 (327)
294 4a0p_A LRP6, LRP-6, low-densit 96.8 0.34 1.2E-05 45.4 27.3 187 167-364 38-238 (628)
295 2p9w_A MAL S 1 allergenic prot 96.8 0.19 6.6E-06 42.5 18.5 151 205-363 8-215 (334)
296 1ijq_A LDL receptor, low-densi 96.7 0.25 8.5E-06 41.8 30.5 195 96-330 29-245 (316)
297 1n7d_A LDL receptor, low-densi 96.5 0.022 7.7E-07 54.2 12.1 196 97-331 406-622 (699)
298 4hw6_A Hypothetical protein, I 96.3 0.37 1.3E-05 42.8 18.2 145 210-362 140-303 (433)
299 2ism_A Putative oxidoreductase 96.3 0.45 1.5E-05 41.0 24.6 104 97-225 31-151 (352)
300 3ott_A Two-component system se 96.2 0.9 3.1E-05 43.6 32.8 245 97-362 146-447 (758)
301 2xbg_A YCF48-like protein; pho 96.2 0.47 1.6E-05 40.3 34.5 248 96-360 35-319 (327)
302 3sov_A LRP-6, low-density lipo 96.2 0.47 1.6E-05 40.2 26.5 181 97-288 35-241 (318)
303 3kya_A Putative phosphatase; s 96.1 0.45 1.5E-05 42.9 17.4 147 210-362 140-340 (496)
304 3ei3_A DNA damage-binding prot 95.9 1.7 5.6E-05 44.0 31.2 129 234-363 862-999 (1158)
305 2vpj_A Kelch-like protein 12; 95.9 0.62 2.1E-05 38.8 20.9 177 177-366 65-281 (301)
306 2xzh_A Clathrin heavy chain 1; 95.9 0.68 2.3E-05 39.1 27.6 163 110-288 99-293 (365)
307 3pbp_A Nucleoporin NUP82; beta 95.3 1.4 4.6E-05 38.7 18.9 91 184-285 40-158 (452)
308 3ott_A Two-component system se 95.3 2.2 7.5E-05 40.9 35.9 255 97-365 232-547 (758)
309 3sre_A PON1, serum paraoxonase 95.2 1.4 4.6E-05 37.9 18.9 171 92-285 45-252 (355)
310 2p9w_A MAL S 1 allergenic prot 95.1 1.3 4.5E-05 37.4 24.4 164 91-286 7-216 (334)
311 3sre_A PON1, serum paraoxonase 95.1 1.4 4.9E-05 37.8 17.8 145 210-363 51-252 (355)
312 1tl2_A L10, protein (tachylect 95.0 0.58 2E-05 37.0 12.1 124 98-225 42-198 (236)
313 2xn4_A Kelch-like protein 2; s 95.0 1.4 4.6E-05 36.7 18.3 126 237-366 125-279 (302)
314 1bpo_A Protein (clathrin); cla 95.0 1.8 6.1E-05 38.2 28.5 163 110-288 98-292 (494)
315 3ii7_A Kelch-like protein 7; p 94.9 1.4 4.9E-05 36.7 20.5 175 177-366 58-275 (306)
316 1xi4_A Clathrin heavy chain; a 94.4 5 0.00017 41.1 19.6 163 111-288 99-292 (1630)
317 3ii7_A Kelch-like protein 7; p 94.1 2.2 7.5E-05 35.5 19.0 89 235-325 168-274 (306)
318 3pbp_A Nucleoporin NUP82; beta 93.6 3.5 0.00012 36.2 18.6 69 166-241 125-208 (452)
319 2xn4_A Kelch-like protein 2; s 93.4 2.9 9.8E-05 34.7 23.1 196 118-325 30-278 (302)
320 1zgk_A Kelch-like ECH-associat 93.2 3.2 0.00011 34.6 21.2 207 107-325 24-289 (308)
321 4asc_A Kelch repeat and BTB do 93.0 3.5 0.00012 34.5 19.2 51 236-286 165-222 (315)
322 3s94_A LRP-6, low-density lipo 92.8 6.2 0.00021 36.8 34.2 258 96-364 83-424 (619)
323 2vpj_A Kelch-like protein 12; 92.7 3.7 0.00013 33.9 20.3 89 107-195 62-185 (301)
324 1tl2_A L10, protein (tachylect 91.2 4.6 0.00016 31.9 13.1 170 177-362 6-207 (236)
325 2be1_A Serine/threonine-protei 89.5 0.43 1.5E-05 40.7 5.0 99 233-332 17-139 (339)
326 3a9g_A Putative uncharacterize 89.4 9.3 0.00032 32.7 15.9 68 210-285 30-114 (354)
327 3a9g_A Putative uncharacterize 87.8 12 0.00041 31.9 29.2 48 303-350 276-329 (354)
328 2g8s_A Glucose/sorbosone dehyd 87.8 12 0.00041 31.9 26.4 56 304-361 289-350 (353)
329 3s94_A LRP-6, low-density lipo 87.7 18 0.00061 33.7 37.8 148 210-364 350-511 (619)
330 4asc_A Kelch repeat and BTB do 87.7 11 0.00038 31.3 20.1 136 104-249 42-225 (315)
331 4a0p_A LRP6, LRP-6, low-densit 85.9 23 0.00077 33.1 38.8 147 210-365 390-551 (628)
332 1zgk_A Kelch-like ECH-associat 85.5 14 0.00049 30.5 19.7 169 107-285 70-287 (308)
333 4gq2_M Nucleoporin NUP120; bet 85.3 17 0.00059 35.8 14.2 37 294-330 237-273 (950)
334 2uvk_A YJHT; unknown function, 85.1 16 0.00056 30.8 14.4 90 177-275 22-128 (357)
335 2zwa_A Leucine carboxyl methyl 84.6 28 0.00094 33.0 20.2 131 186-326 469-638 (695)
336 2zwa_A Leucine carboxyl methyl 82.5 34 0.0011 32.4 17.6 180 177-366 400-638 (695)
337 3qhy_B Beta-lactamase inhibito 82.4 19 0.00066 29.5 23.9 225 98-345 25-265 (282)
338 2woz_A Kelch repeat and BTB do 82.4 20 0.00069 29.7 20.5 127 236-365 127-289 (318)
339 3qhy_B Beta-lactamase inhibito 82.1 20 0.00067 29.5 21.5 189 155-363 41-246 (282)
340 2woz_A Kelch repeat and BTB do 82.1 20 0.0007 29.7 21.3 51 236-286 175-232 (318)
341 4gq2_M Nucleoporin NUP120; bet 81.2 2.7 9.3E-05 41.5 6.7 40 97-136 236-275 (950)
342 3das_A Putative oxidoreductase 80.9 25 0.00086 29.9 28.6 114 89-223 24-154 (347)
343 3uc1_A DNA gyrase subunit A; D 77.1 32 0.0011 29.0 23.9 170 177-354 111-321 (327)
344 1cru_A Protein (soluble quinop 76.1 42 0.0014 29.8 20.4 35 96-130 26-60 (454)
345 2uvk_A YJHT; unknown function, 74.9 37 0.0013 28.6 19.7 47 107-153 65-125 (357)
346 4fhn_B Nucleoporin NUP120; pro 73.5 2.8 9.7E-05 42.3 4.4 39 98-136 239-277 (1139)
347 3f7f_A Nucleoporin NUP120; nuc 72.2 7 0.00024 36.8 6.3 38 97-136 222-259 (729)
348 4d9s_A UVB-resistance protein 72.2 49 0.0017 28.7 25.1 253 97-362 16-356 (406)
349 2wg3_C Hedgehog-interacting pr 70.7 58 0.002 29.0 14.0 30 97-126 14-44 (463)
350 4fhn_B Nucleoporin NUP120; pro 61.5 31 0.0011 34.9 9.1 30 301-330 246-275 (1139)
351 2g8s_A Glucose/sorbosone dehyd 56.6 90 0.0031 26.4 15.1 49 210-266 19-75 (353)
352 1cru_A Protein (soluble quinop 53.4 1.2E+02 0.0041 26.8 21.8 50 210-266 28-86 (454)
353 3f7f_A Nucleoporin NUP120; nuc 47.8 35 0.0012 32.2 6.3 36 168-207 224-259 (729)
354 4d9s_A UVB-resistance protein 43.4 1.6E+02 0.0055 25.4 22.2 186 167-362 17-252 (406)
355 2ism_A Putative oxidoreductase 43.0 1.5E+02 0.0051 24.9 25.0 69 167-246 32-115 (352)
356 3sbq_A Nitrous-oxide reductase 42.2 2.1E+02 0.0072 26.4 11.1 88 165-259 322-432 (638)
357 3sbq_A Nitrous-oxide reductase 41.4 69 0.0024 29.4 6.9 66 299-364 330-409 (638)
358 3das_A Putative oxidoreductase 39.9 1.7E+02 0.0059 24.7 19.6 69 210-285 33-116 (347)
359 3b7f_A Glycosyl hydrolase, BNR 38.5 1.8E+02 0.0063 24.7 18.8 97 177-281 24-143 (394)
360 3kci_A Probable E3 ubiquitin-p 28.2 2.8E+02 0.0095 23.6 23.4 202 98-323 106-345 (389)
361 4a9v_A PHOX; hydrolase, beta-p 25.2 3E+02 0.01 25.3 8.3 55 167-225 477-548 (592)
362 3no0_A DNA gyrase subunit A; D 24.8 2.8E+02 0.0095 22.4 15.3 142 177-329 82-252 (276)
363 3hx6_A Type 4 fimbrial biogene 21.5 4.7E+02 0.016 23.9 9.5 53 313-365 222-286 (570)
364 3zwu_A Alkaline phosphatase PH 20.9 2.9E+02 0.01 25.5 7.6 52 169-224 479-547 (592)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-43 Score=309.44 Aligned_cols=290 Identities=18% Similarity=0.232 Sum_probs=245.1
Q ss_pred cccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCC
Q 041206 29 LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGS 108 (371)
Q Consensus 29 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~ 108 (371)
...+.+...+++|.+.|.++++++...-.....++++.|+.+++|+.. .........+++|...|.+++|+|++
T Consensus 19 ~~~g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~------~~~~~~~~~l~gh~~~v~~~~~~~~~ 92 (321)
T 3ow8_A 19 NQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWR------DERLDLQWSLEGHQLGVVSVDISHTL 92 (321)
T ss_dssp --CEEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEE------TTEEEEEEEECCCSSCEEEEEECSSS
T ss_pred hhhhheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECC------CCCeeeeeeeccCCCCEEEEEECCCC
Confidence 455777788889999999999987533222334558899999999942 12334567899999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCe
Q 041206 109 NKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGV 186 (371)
Q Consensus 109 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~ 186 (371)
.++++++.|++|++||+.+++++..+.. +...+.+++|+|+ +|++++.+|.
T Consensus 93 ~~l~s~s~D~~i~lWd~~~~~~~~~~~~---------------------------~~~~~~~~~~spdg~~l~~g~~dg~ 145 (321)
T 3ow8_A 93 PIAASSSLDAHIRLWDLENGKQIKSIDA---------------------------GPVDAWTLAFSPDSQYLATGTHVGK 145 (321)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEEC---------------------------CTTCCCCEEECTTSSEEEEECTTSE
T ss_pred CEEEEEeCCCcEEEEECCCCCEEEEEeC---------------------------CCccEEEEEECCCCCEEEEEcCCCc
Confidence 9999999999999999999988877764 3335888999998 9999999999
Q ss_pred EEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEE
Q 041206 187 ISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLF 264 (371)
Q Consensus 187 v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 264 (371)
|++||++++ +....+..+. .+.+++|+|+++ ++++ +.|+.|++||+++++++..+.+|..+|.+++|
T Consensus 146 v~i~~~~~~----~~~~~~~~~~~~v~~~~~spdg~~lasg-------~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 214 (321)
T 3ow8_A 146 VNIFGVESG----KKEYSLDTRGKFILSIAYSPDGKYLASG-------AIDGIINIFDIATGKLLHTLEGHAMPIRSLTF 214 (321)
T ss_dssp EEEEETTTC----SEEEEEECSSSCEEEEEECTTSSEEEEE-------ETTSCEEEEETTTTEEEEEECCCSSCCCEEEE
T ss_pred EEEEEcCCC----ceeEEecCCCceEEEEEECCCCCEEEEE-------cCCCeEEEEECCCCcEEEEEcccCCceeEEEE
Confidence 999999988 6777888888 999999999996 8899 99999999999999999999999999999999
Q ss_pred c--CCeEEEEeCCCcEEEEEccCCCCc----ceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEE
Q 041206 265 W--DEYLFSSSLDETIKIWLYTHTKNN----AELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVE 337 (371)
Q Consensus 265 ~--~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~ 337 (371)
+ +++|++++.|+.|++||++..... .+...+..+.+.+++.+|++++.|+.|++||+.+++++..+. |...|.
T Consensus 215 spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~ 294 (321)
T 3ow8_A 215 SPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVW 294 (321)
T ss_dssp CTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred cCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEE
Confidence 8 679999999999999998876532 222345666667777799999999999999999999988886 678999
Q ss_pred EEEeCCCC-eEEeeCCCCcEEEEEcc
Q 041206 338 VDQIGPAG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 338 ~~~~s~~~-~l~~~~~dg~i~iw~~~ 362 (371)
+++|+|++ .|++++.||.|++||+.
T Consensus 295 ~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 295 GVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999 99999999999999963
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.4e-43 Score=317.55 Aligned_cols=278 Identities=17% Similarity=0.261 Sum_probs=244.1
Q ss_pred EEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEE
Q 041206 35 EEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSG 114 (371)
Q Consensus 35 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~ 114 (371)
...+.+|...|.+++++|...+ .+.++.++.|++|+ ...++...++++|.+.|++++|+|++++|++|
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~----l~s~s~Dg~i~vwd--------~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sg 168 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSV----MVSASEDATIKVWD--------YETGDFERTLKGHTDSVQDISFDHSGKLLASC 168 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSE----EEEEESSSCEEEEE--------TTTCCCCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred eEeecccCCcEEEEEEcCCCCE----EEEEeCCCeEEEEE--------CCCCcEEEEEeccCCcEEEEEEcCCCCEEEEE
Confidence 4568899999999999996553 34577899999999 45667889999999999999999999999999
Q ss_pred eCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEec
Q 041206 115 SRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVWKG 192 (371)
Q Consensus 115 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~ 192 (371)
+.|++|++||+.+++++..+.. |...|.+++|+|+ ++++|+.|+.|++||+
T Consensus 169 s~D~~i~iwd~~~~~~~~~~~~---------------------------h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~ 221 (410)
T 1vyh_C 169 SADMTIKLWDFQGFECIRTMHG---------------------------HDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221 (410)
T ss_dssp ETTSCCCEEETTSSCEEECCCC---------------------------CSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred eCCCeEEEEeCCCCceeEEEcC---------------------------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 9999999999999888877664 4557999999987 9999999999999999
Q ss_pred cCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEcC----
Q 041206 193 TFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWD---- 266 (371)
Q Consensus 193 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---- 266 (371)
+++ .++..+.+|. .|.++.++|++. ++++ +.|+.|++||++++++...+.+|...|.+++|++
T Consensus 222 ~~~----~~~~~~~~h~~~v~~~~~~~~g~~l~s~-------s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 290 (410)
T 1vyh_C 222 QTG----YCVKTFTGHREWVRMVRPNQDGTLIASC-------SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSY 290 (410)
T ss_dssp TTC----CEEEEEECCSSCEEEEEECTTSSEEEEE-------ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGG
T ss_pred CCC----cEEEEEeCCCccEEEEEECCCCCEEEEE-------cCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccc
Confidence 998 7888999999 999999999996 8899 9999999999999999999999999999999974
Q ss_pred ------------------CeEEEEeCCCcEEEEEccCCCCc----ceecceEEEEecCCCCEEEEecCCCeEEEEEcCCc
Q 041206 267 ------------------EYLFSSSLDETIKIWLYTHTKNN----AELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSF 324 (371)
Q Consensus 267 ------------------~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 324 (371)
.+|++++.|++|++||++..... .+...+..+.+.+++.+|++++.|+.|++||+.++
T Consensus 291 ~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~ 370 (410)
T 1vyh_C 291 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370 (410)
T ss_dssp GGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred cchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 37999999999999998876532 22234566667777779999999999999999999
Q ss_pred ceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcc
Q 041206 325 KLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 325 ~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~ 362 (371)
+++..+. |...|++++|+|++ +|++|+.||.|++|+++
T Consensus 371 ~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 371 RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 8888776 67899999999999 99999999999999863
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6e-42 Score=300.90 Aligned_cols=284 Identities=13% Similarity=0.186 Sum_probs=243.5
Q ss_pred cceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCE
Q 041206 31 KGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNK 110 (371)
Q Consensus 31 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 110 (371)
..+....+.+|...|.+++++|...++ ..++.++.+++|+ ....+.+..+..|...|.+++|+|++++
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l----~s~s~Dg~v~iWd--------~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 111 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSRLL----LSASQDGKLIIWD--------SYTTNKVHAIPLRSSWVMTCAYAPSGNY 111 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSSEE----EEEETTTEEEEEE--------TTTCCEEEEEECSSSCEEEEEECTTSSE
T ss_pred cchhheeecCCCCceEEEEECCCCCEE----EEEeCCCcEEEEE--------CCCCCcceEeecCCccEEEEEECCCCCE
Confidence 356678899999999999999976543 3467889999999 4556788899999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC-EEEEEeCCCeEEE
Q 041206 111 LYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND-LLFAGSEGGVISV 189 (371)
Q Consensus 111 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~-~l~~~~~dg~v~i 189 (371)
|++|+.|+.|++|++.+++..... ...+..|.+.|.++.|.++ .+++++.|+.|++
T Consensus 112 l~s~~~d~~v~iw~~~~~~~~~~~-----------------------~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~ 168 (340)
T 1got_B 112 VACGGLDNICSIYNLKTREGNVRV-----------------------SRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168 (340)
T ss_dssp EEEEETTCEEEEEETTTCSBSCEE-----------------------EEEEECCSSCEEEEEEEETTEEEEEETTSCEEE
T ss_pred EEEEeCCCeEEEEECccCCCccee-----------------------EEEecCCCccEEEEEECCCCcEEEEECCCcEEE
Confidence 999999999999999876321000 1112235667999999887 9999999999999
Q ss_pred EeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--
Q 041206 190 WKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW-- 265 (371)
Q Consensus 190 wd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-- 265 (371)
||+.++ +....+.+|. .|.+++|+|++. +++| +.|+.|++||+++++++..+.+|...|.+++|+
T Consensus 169 wd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~sg-------~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~ 237 (340)
T 1got_B 169 WDIETG----QQTTTFTGHTGDVMSLSLAPDTRLFVSG-------ACDASAKLWDVREGMCRQTFTGHESDINAICFFPN 237 (340)
T ss_dssp EETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEE-------ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTT
T ss_pred EECCCC----cEEEEEcCCCCceEEEEECCCCCEEEEE-------eCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCC
Confidence 999998 8888999999 999999999986 8899 999999999999999999999999999999998
Q ss_pred CCeEEEEeCCCcEEEEEccCCCC------cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEE
Q 041206 266 DEYLFSSSLDETIKIWLYTHTKN------NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEV 338 (371)
Q Consensus 266 ~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~ 338 (371)
+++|++++.|++|++||++..+. ......+..+.+.+++.+|++|+.|+.|++||+.+++.+..+. |..+|.+
T Consensus 238 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~ 317 (340)
T 1got_B 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC 317 (340)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEE
Confidence 67999999999999999876543 1222346666777777799999999999999999988887776 6889999
Q ss_pred EEeCCCC-eEEeeCCCCcEEEEE
Q 041206 339 DQIGPAG-LFFPGDASGSVGVWK 360 (371)
Q Consensus 339 ~~~s~~~-~l~~~~~dg~i~iw~ 360 (371)
++|+|++ +|++|+.||.|++||
T Consensus 318 ~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 318 LGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEcCCCCEEEEEcCCccEEecC
Confidence 9999999 999999999999996
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.6e-42 Score=322.71 Aligned_cols=334 Identities=16% Similarity=0.142 Sum_probs=267.2
Q ss_pred cccCCCCceeeccCcc-------cc--cceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCcc
Q 041206 13 HKHSEGGETMMSDDDD-------LM--KGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTT 83 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d-------~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (371)
-+|||+|++||+++.| +. ...+...+.+|...|.+++|+|....+..........+.+++|+
T Consensus 65 ~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--------- 135 (611)
T 1nr0_A 65 AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--------- 135 (611)
T ss_dssp EEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT---------
T ss_pred EEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee---------
Confidence 3589999999999877 22 23456678899999999999998876553322122235777877
Q ss_pred CCceeeEeeeCccCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceEEEEeCC-CeeEEEee--cCCEEEE-ecCCcE
Q 041206 84 NSLATLMKLNGHKKAVTNVGLPSGSN-KLYSGSRDGRVSVWDRDSGRCVNVITNG-AEIGCLIS--EGSWVFL-GLPNAV 158 (371)
Q Consensus 84 ~~~~~~~~l~~h~~~V~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~-~~~~~i 158 (371)
.++.+..+.+|.+.|++++|+|+++ +|++|+.|++|++||..++++..++..+ ..+.++.+ ++.++++ +.|+.|
T Consensus 136 -~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i 214 (611)
T 1nr0_A 136 -TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTI 214 (611)
T ss_dssp -TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred -CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcE
Confidence 2345678999999999999999987 6999999999999999999888888754 56777765 5777776 579999
Q ss_pred EEEEe------------------CCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcc-------------------
Q 041206 159 KSWRV------------------NAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPF------------------- 199 (371)
Q Consensus 159 ~~~~~------------------~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~------------------- 199 (371)
++||. |.+.|.+++|+|+ +|++++.|+.|++||+.++....
T Consensus 215 ~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (611)
T 1nr0_A 215 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK 294 (611)
T ss_dssp EEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECS
T ss_pred EEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcC
Confidence 99994 5568999999998 99999999999999998752100
Q ss_pred --------------------eeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEe-ecCC
Q 041206 200 --------------------KQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTL-KGHS 256 (371)
Q Consensus 200 --------------------~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~-~~~~ 256 (371)
+....+.+|. .|.+++|+|+++ ++++ +.|+.|++||+.+++....+ .+|.
T Consensus 295 ~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~-------s~D~~v~~Wd~~~~~~~~~~~~~h~ 367 (611)
T 1nr0_A 295 QALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSA-------DAEGHINSWDISTGISNRVFPDVHA 367 (611)
T ss_dssp SCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE-------ETTSCEEEEETTTCCEEECSSCSCS
T ss_pred CEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEE-------eCCCcEEEEECCCCceeeecccCCc
Confidence 1223456788 999999999996 8999 99999999999999887766 6799
Q ss_pred CcEEEEEEc-CCeEEEEeCCCcEEEEEccCCCCcc--------------------------------------------e
Q 041206 257 DTVTSLLFW-DEYLFSSSLDETIKIWLYTHTKNNA--------------------------------------------E 291 (371)
Q Consensus 257 ~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~--------------------------------------------~ 291 (371)
..|.+++|+ +..+++++.|+.+++|++....... .
T Consensus 368 ~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~ 447 (611)
T 1nr0_A 368 TMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPI 447 (611)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEEC
T ss_pred ceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeec
Confidence 999999998 6789999999999999976432110 0
Q ss_pred ecceEEEEecCCCCEEEEecCCCeEEEEEcCCcce--eeeecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEccc
Q 041206 292 LSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKL--RARIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 292 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~ 363 (371)
...+..+.+.+++++|++|+.|++|++||+.++.. .....|...|++++|+||| +|++++.|+.|++|++.+
T Consensus 448 ~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~ 522 (611)
T 1nr0_A 448 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN 522 (611)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred CCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCC
Confidence 01233455666777999999999999999987643 2334578899999999999 999999999999999987
No 5
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.2e-41 Score=297.77 Aligned_cols=264 Identities=19% Similarity=0.299 Sum_probs=228.9
Q ss_pred ceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-CeeEEEe--ecCCEEEE-ecCCcEEEE
Q 041206 86 LATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNG-AEIGCLI--SEGSWVFL-GLPNAVKSW 161 (371)
Q Consensus 86 ~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~-~~~~~i~~~ 161 (371)
.+...+|+||.+.|++++|+|++++|+||+.||+|++||..+++....+..+ ..+.++. +++.++++ +.|+.+++|
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 4567899999999999999999999999999999999999999888877754 3344444 56777777 468999999
Q ss_pred Ee-----------------CCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCC--
Q 041206 162 RV-----------------NAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSND-- 219 (371)
Q Consensus 162 ~~-----------------~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~-- 219 (371)
++ |+..|.+++|+++ .+++++.|+.|++||++++ +.+..+.+|. .|.+++++|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~ 209 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG----QLLQSFHGHGADVLCLDLAPSET 209 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEECCCSS
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC----eEEEEEcCCCCCeEEEEEEeCCC
Confidence 86 4457899999988 8999999999999999998 7889999999 9999999874
Q ss_pred c-eeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCc------c
Q 041206 220 T-RWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNN------A 290 (371)
Q Consensus 220 ~-~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~------~ 290 (371)
+ .+++| +.|+.|++||+++++++..+.+|...|.+++|+ +++|++++.|++|++||++..... .
T Consensus 210 g~~l~sg-------s~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~ 282 (354)
T 2pbi_B 210 GNTFVSG-------GCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES 282 (354)
T ss_dssp CCEEEEE-------ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT
T ss_pred CCEEEEE-------eCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC
Confidence 4 48999 999999999999999999999999999999998 679999999999999998765431 1
Q ss_pred eecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEE
Q 041206 291 ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWK 360 (371)
Q Consensus 291 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~ 360 (371)
....+..+.+.+++.+|++++.|+.|++||+.+++.+..+. |...|++++|+|++ +|++|+.||.|++|+
T Consensus 283 ~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 283 IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 12244555666677799999999999999999998887776 68899999999999 999999999999995
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.1e-41 Score=318.10 Aligned_cols=328 Identities=10% Similarity=0.095 Sum_probs=264.9
Q ss_pred ccCCCCc-eeeccCcc-------cccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCC
Q 041206 14 KHSEGGE-TMMSDDDD-------LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNS 85 (371)
Q Consensus 14 ~~sp~g~-~l~~~~~d-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (371)
.|+|++. .|++++.| ...++++..+.+|...|.+++|+|...++ ..++.|+.+++|+ ...
T Consensus 154 ~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~l----as~s~D~~i~lwd--------~~~ 221 (611)
T 1nr0_A 154 DFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLF----ASTGGDGTIVLYN--------GVD 221 (611)
T ss_dssp EECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEE----EEEETTSCEEEEE--------TTT
T ss_pred EECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEE----EEEECCCcEEEEE--------CCC
Confidence 4899997 48888877 35678888999999999999999976643 3467889999999 345
Q ss_pred ceeeEeee-------CccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC----eeEEEeecCCEEEE-e
Q 041206 86 LATLMKLN-------GHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGA----EIGCLISEGSWVFL-G 153 (371)
Q Consensus 86 ~~~~~~l~-------~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~ 153 (371)
++.+..+. +|.+.|++++|+|++++|++++.|++|++||+.+++++.++..+. ....+.+++..+++ +
T Consensus 222 g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s 301 (611)
T 1nr0_A 222 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS 301 (611)
T ss_dssp CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEE
T ss_pred CcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEe
Confidence 56677774 899999999999999999999999999999999999988887532 23344456555554 6
Q ss_pred cCCcEEEEEeC-----------CCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEE-ecCc-ceEEEEecC
Q 041206 154 LPNAVKSWRVN-----------AASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASI-RAPL-WFCSLSSSN 218 (371)
Q Consensus 154 ~~~~i~~~~~~-----------~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~-~v~~~~~~~ 218 (371)
.++.+++|+.. ...|.+++|+|+ +|++++.|+.|++||+.++ +....+ ..|. .|.++++++
T Consensus 302 ~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~----~~~~~~~~~h~~~v~~~~~s~ 377 (611)
T 1nr0_A 302 ANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG----ISNRVFPDVHATMITGIKTTS 377 (611)
T ss_dssp TTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC----CEEECSSCSCSSCEEEEEECT
T ss_pred CCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC----ceeeecccCCcceEEEEEECC
Confidence 78999999864 458999999998 9999999999999999987 444444 5677 999999999
Q ss_pred CceeEecccceeeeeCCCeEEEEECCCceE-----------------------------------------EEEeecCCC
Q 041206 219 DTRWNSKEEAAVFEFCGHTTRTWNLDNLEC-----------------------------------------VQTLKGHSD 257 (371)
Q Consensus 219 ~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~-----------------------------------------~~~~~~~~~ 257 (371)
++.++++ +.|+.+++|++.++.. +..+. |..
T Consensus 378 ~~~l~s~-------s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~-~~~ 449 (611)
T 1nr0_A 378 KGDLFTV-------SWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVP-ISY 449 (611)
T ss_dssp TSCEEEE-------ETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEE-CSS
T ss_pred CCcEEEE-------EcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeee-cCC
Confidence 8889999 9999999999764221 11222 556
Q ss_pred cEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC-----cceecceEEEEecCCCCEEEEecCCCeEEEEEcCC-cceeee
Q 041206 258 TVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN-----NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPS-FKLRAR 329 (371)
Q Consensus 258 ~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~ 329 (371)
.+.+++|+ +++|++++.|++|++||+..... ..+...+..+.+.+++++|++++.|++|++||+.+ +++...
T Consensus 450 ~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~ 529 (611)
T 1nr0_A 450 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT 529 (611)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC
T ss_pred CceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeee
Confidence 78999998 68999999999999999865421 12234566667777778999999999999999987 555443
Q ss_pred --ec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccc
Q 041206 330 --IF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 330 --~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~ 365 (371)
.. |...|++++|+||| +|++|+.|++|++|++..+.
T Consensus 530 ~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 530 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred eeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 22 78899999999999 99999999999999998654
No 7
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.8e-41 Score=314.86 Aligned_cols=321 Identities=21% Similarity=0.295 Sum_probs=266.8
Q ss_pred cccCCCCceeeccCcc------cccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCc
Q 041206 13 HKHSEGGETMMSDDDD------LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSL 86 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (371)
..|+|+|++|++++.| ...++.+..+.+|...|.+++++|...++. .+..++.+++|+ ...
T Consensus 227 ~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~----~~~~d~~i~~w~---------~~~ 293 (577)
T 2ymu_A 227 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIA----SASDDKTVKLWN---------RNG 293 (577)
T ss_dssp EEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEE----EEETTSCEEEEE---------TTS
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEE----EEeCCCEEEEEe---------CCC
Confidence 3489999999998877 235788889999999999999999765432 356778899999 345
Q ss_pred eeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEee--cCCEEEEe-cCCcEEEEEe
Q 041206 87 ATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLIS--EGSWVFLG-LPNAVKSWRV 163 (371)
Q Consensus 87 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~i~~~~~ 163 (371)
+.+..+.+|...|.+++|+|++++|++++.|++|++||...........+...+.++.+ ++.+++++ .++.+++|+.
T Consensus 294 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~ 373 (577)
T 2ymu_A 294 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 373 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC
Confidence 77889999999999999999999999999999999999876554433334566766654 57777764 6789999986
Q ss_pred C----------CCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccce
Q 041206 164 N----------AASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAA 229 (371)
Q Consensus 164 ~----------~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~ 229 (371)
. ...|.+++|+|+ +|++++.|+.|++||... +.+..+..|. .|.+++|+|+++ ++++
T Consensus 374 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-----~~~~~~~~~~~~v~~~~~s~d~~~l~~~---- 444 (577)
T 2ymu_A 374 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVWGVAFSPDDQTIASA---- 444 (577)
T ss_dssp TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC-----CEEEEEECCSSCEEEEEECTTSSEEEEE----
T ss_pred CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC-----CEEEEecCCCCCeEEEEECCCCCEEEEE----
Confidence 4 348999999998 899999999999999643 6778889999 999999999986 8889
Q ss_pred eeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC---cceecceEEEEecCCC
Q 041206 230 VFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN---NAELSSLFGMLDAEAK 304 (371)
Q Consensus 230 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~ 304 (371)
+.|+.|++||. +++.+..+.+|...|.+++|+ +++|++++.|+.|++||...... ..+...+..+.+.+++
T Consensus 445 ---~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg 520 (577)
T 2ymu_A 445 ---SDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDG 520 (577)
T ss_dssp ---ETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTS
T ss_pred ---cCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCC
Confidence 99999999996 467888999999999999998 67999999999999999643221 1223456666677777
Q ss_pred CEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEE
Q 041206 305 PVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWK 360 (371)
Q Consensus 305 ~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~ 360 (371)
++|++++.|+.|++||. +++++..+. |...|++++|+||+ +|++++.|++|++||
T Consensus 521 ~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 521 QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 79999999999999996 466666666 78899999999999 999999999999997
No 8
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.1e-40 Score=290.12 Aligned_cols=288 Identities=17% Similarity=0.260 Sum_probs=237.8
Q ss_pred cceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCE
Q 041206 31 KGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNK 110 (371)
Q Consensus 31 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 110 (371)
...+...+.+|.+.|.+++++|... ....+++.|+.+++|+.... ......++..+++|...|++++|+|++++
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~---~~l~s~s~D~~v~~W~~~~~---~~~~~~~~~~~~~h~~~v~~~~~s~dg~~ 79 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQP---NLLLSASRDKTLISWKLTGD---DQKFGVPVRSFKGHSHIVQDCTLTADGAY 79 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCT---TEEEEEETTSEEEEEEEEEE---TTEEEEEEEEEECCSSCEEEEEECTTSSE
T ss_pred EEEEEEEEccccceEEEEEccCCCc---cEEEEecCCccEEEecCCCC---CccccccceEEeCCcccEEEEEECCCCCE
Confidence 4567778999999999999988431 11234778999999995321 11124567899999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEE
Q 041206 111 LYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVIS 188 (371)
Q Consensus 111 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~ 188 (371)
|++|+.|++|++||+.+++.+..+.. |...|.+++|+|+ ++++|+.|+.|+
T Consensus 80 l~s~s~D~~v~~wd~~~~~~~~~~~~---------------------------h~~~v~~~~~~~~~~~l~s~s~D~~i~ 132 (319)
T 3frx_A 80 ALSASWDKTLRLWDVATGETYQRFVG---------------------------HKSDVMSVDIDKKASMIISGSRDKTIK 132 (319)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEEC---------------------------CSSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred EEEEeCCCEEEEEECCCCCeeEEEcc---------------------------CCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 99999999999999999998877764 5557999999988 999999999999
Q ss_pred EEeccCCCCcceeeEEEecCc-ceEEEEecCCc-------eeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEE
Q 041206 189 VWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT-------RWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVT 260 (371)
Q Consensus 189 iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~-------~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 260 (371)
+||++. +.+..+.+|. .|.++.+.|.. .++++ +.|+.|++||+++.+....+.+|...|.
T Consensus 133 vwd~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~-------~~d~~i~~wd~~~~~~~~~~~~h~~~v~ 200 (319)
T 3frx_A 133 VWTIKG-----QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA-------GNDKMVKAWNLNQFQIEADFIGHNSNIN 200 (319)
T ss_dssp EEETTS-----CEEEEECCCSSCEEEEEECCC------CCEEEEE-------ETTSCEEEEETTTTEEEEEECCCCSCEE
T ss_pred EEECCC-----CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEE-------eCCCEEEEEECCcchhheeecCCCCcEE
Confidence 999975 5677888998 99999999853 37888 9999999999999999999999999999
Q ss_pred EEEEc--CCeEEEEeCCCcEEEEEccCCCCccee---cceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec----
Q 041206 261 SLLFW--DEYLFSSSLDETIKIWLYTHTKNNAEL---SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF---- 331 (371)
Q Consensus 261 ~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---- 331 (371)
+++|+ +++|++++.|++|++||+...+....+ ..+..+.+.+++.++++++. +.+++|++.....+..+.
T Consensus 201 ~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~ 279 (319)
T 3frx_A 201 TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFA 279 (319)
T ss_dssp EEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCT
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCcccc
Confidence 99998 679999999999999998776532111 24555666677768877765 569999999877665543
Q ss_pred -----CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccc
Q 041206 332 -----SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 332 -----~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
+...+.+++|+||| +|++|+.||.|++|++.+.
T Consensus 280 ~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 280 GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp TCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred ccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 24578999999999 9999999999999999764
No 9
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.6e-41 Score=290.08 Aligned_cols=245 Identities=19% Similarity=0.266 Sum_probs=212.3
Q ss_pred ceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCC
Q 041206 86 LATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNA 165 (371)
Q Consensus 86 ~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 165 (371)
.+..++|++|.+.|++++|+|++++|++++.||+|++||+++++.+..+.. +.
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~---------------------------~~ 55 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQV---------------------------TE 55 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC---------------------------CS
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeec---------------------------cC
Confidence 456788999999999999999999999999999999999999988877764 44
Q ss_pred CCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEE
Q 041206 166 ASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTW 241 (371)
Q Consensus 166 ~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iw 241 (371)
.+|.+++|+++ +|++|+.|+.|++||+.++ +.+..+.+|. .|.+++|+|++. +++| +.|++|++|
T Consensus 56 ~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~sg-------s~D~~v~lW 124 (304)
T 2ynn_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG----EKVVDFEAHPDYIRSIAVHPTKPYVLSG-------SDDLTVKLW 124 (304)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEECSSSSEEEEE-------ETTSCEEEE
T ss_pred CcEEEEEEeCCCCEEEEECCCCEEEEEECCCC----cEEEEEeCCCCcEEEEEEcCCCCEEEEE-------CCCCeEEEE
Confidence 46899999987 9999999999999999998 7888999999 999999999986 8899 999999999
Q ss_pred ECCCc-eEEEEeecCCCcEEEEEEcC---CeEEEEeCCCcEEEEEccCCCCccee-----cceEEEEec--CCCCEEEEe
Q 041206 242 NLDNL-ECVQTLKGHSDTVTSLLFWD---EYLFSSSLDETIKIWLYTHTKNNAEL-----SSLFGMLDA--EAKPVLFSS 310 (371)
Q Consensus 242 d~~~~-~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~--~~~~~l~~~ 310 (371)
|++++ .....+.+|...|.+++|++ .+|++++.|++|++||++........ ..+..+.+. +++.+|+++
T Consensus 125 d~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 204 (304)
T 2ynn_A 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA 204 (304)
T ss_dssp EGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEE
T ss_pred ECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEE
Confidence 99877 55678899999999999983 68999999999999998765532111 223333332 355699999
Q ss_pred cCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccceec
Q 041206 311 GKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 311 ~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
+.|++|++||+++++++..+. |...|.+++|+|++ +|++|+.||.|++||+.+.+..+
T Consensus 205 s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~ 264 (304)
T 2ynn_A 205 SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264 (304)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred cCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceee
Confidence 999999999999999888887 67899999999999 99999999999999998876544
No 10
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.1e-40 Score=286.50 Aligned_cols=284 Identities=15% Similarity=0.220 Sum_probs=237.6
Q ss_pred cceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCE
Q 041206 31 KGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNK 110 (371)
Q Consensus 31 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 110 (371)
+.++...+.+|.+.|.+++|+|...++. .++.++.+++|+ ..+.+.+..+++|..+|.+++|+|++++
T Consensus 2 ~l~~~~~~~~h~~~V~~~~fsp~~~~l~----s~~~dg~v~lWd--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 69 (304)
T 2ynn_A 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVL----TTLYSGRVELWN--------YETQVEVRSIQVTETPVRAGKFIARKNW 69 (304)
T ss_dssp CCCCEEEEEEECSCEEEEEECSSSSEEE----EEETTSEEEEEE--------TTTTEEEEEEECCSSCEEEEEEEGGGTE
T ss_pred cceeEEeecCCCCceEEEEECCCCCEEE----EEcCCCcEEEEE--------CCCCceeEEeeccCCcEEEEEEeCCCCE
Confidence 3456788999999999999999776543 466889999999 4566788999999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEE
Q 041206 111 LYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVIS 188 (371)
Q Consensus 111 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~ 188 (371)
|++|+.|++|++||+.+++++..+.. |...|.+++|+|+ ++++|+.|+.|+
T Consensus 70 l~s~s~d~~i~vwd~~~~~~~~~~~~---------------------------h~~~v~~~~~~~~~~~l~sgs~D~~v~ 122 (304)
T 2ynn_A 70 IIVGSDDFRIRVFNYNTGEKVVDFEA---------------------------HPDYIRSIAVHPTKPYVLSGSDDLTVK 122 (304)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEEC---------------------------CSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred EEEECCCCEEEEEECCCCcEEEEEeC---------------------------CCCcEEEEEEcCCCCEEEEECCCCeEE
Confidence 99999999999999999998877764 5557999999998 999999999999
Q ss_pred EEeccCCCCcceeeEEEecCc-ceEEEEecCC-ce-eEecccceeeeeCCCeEEEEECCCceEEEEee-cCCCcEEEEEE
Q 041206 189 VWKGTFVANPFKQVASIRAPL-WFCSLSSSND-TR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLK-GHSDTVTSLLF 264 (371)
Q Consensus 189 iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~-~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~ 264 (371)
+||++++. .....+.+|. .|.+++|+|+ +. +++| +.|+.|++||++++++...+. +|...+..+.|
T Consensus 123 lWd~~~~~---~~~~~~~~h~~~v~~v~~~p~~~~~l~sg-------s~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~ 192 (304)
T 2ynn_A 123 LWNWENNW---ALEQTFEGHEHFVMCVAFNPKDPSTFASG-------CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192 (304)
T ss_dssp EEEGGGTT---EEEEEECCCCSCEEEEEECTTCTTEEEEE-------ETTSEEEEEETTCSSCSEEEECCCTTCEEEEEE
T ss_pred EEECCCCc---chhhhhcccCCcEEEEEECCCCCCEEEEE-------eCCCeEEEEECCCCCccceeccCCcCcEEEEEE
Confidence 99998763 4567788999 9999999994 44 8999 999999999999877766654 56678999998
Q ss_pred c----CCeEEEEeCCCcEEEEEccCCCC----cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCce
Q 041206 265 W----DEYLFSSSLDETIKIWLYTHTKN----NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRRE 335 (371)
Q Consensus 265 ~----~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~ 335 (371)
. +.+|++++.|++|++||++..+. ..+...+..+.+.+++++|++++.||+|++||+.+++++..+. +...
T Consensus 193 ~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~ 272 (304)
T 2ynn_A 193 YPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER 272 (304)
T ss_dssp CCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSS
T ss_pred EEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCcc
Confidence 6 46999999999999999987653 2233456666677777799999999999999999999888887 5688
Q ss_pred EEEEEeCCCC---eEEeeCCCCcEEEEEcccc
Q 041206 336 VEVDQIGPAG---LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 336 v~~~~~s~~~---~l~~~~~dg~i~iw~~~~~ 364 (371)
+.+++|+|++ ++++|+. ..+.+|++...
T Consensus 273 ~~~~~~~~~~~~~~~asg~~-~g~~~~~~~~~ 303 (304)
T 2ynn_A 273 SWCIATHPTGRKNYIASGFD-NGFTVLSLGND 303 (304)
T ss_dssp EEEEEECTTCGGGCEEEEET-TEEEEEECC--
T ss_pred EEEEEECCCCCceEEEEecC-CceEEEEeccC
Confidence 9999999988 4677654 55778887653
No 11
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-40 Score=289.09 Aligned_cols=294 Identities=18% Similarity=0.224 Sum_probs=221.6
Q ss_pred ccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEee-eC-ccCCeEEEEEcCC
Q 041206 30 MKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKL-NG-HKKAVTNVGLPSG 107 (371)
Q Consensus 30 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l-~~-h~~~V~~~~~~~~ 107 (371)
...+++..+++|...|.++++++. . ...++.++.+++|+... ...+.+..+ .+ |.+.|++++|+|+
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~~-~-----las~~~D~~i~lw~~~~------~~~~~~~~~~~~~h~~~v~~v~~sp~ 69 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQG-I-----LATGSTDRKIKLVSVKY------DDFTLIDVLDETAHKKAIRSVAWRPH 69 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEETT-E-----EEEEESSSCEEEEECSS------SCCEEEEEECTTCCCSCEEEEEECTT
T ss_pred cccccceeeccCCCceeeeccCCC-E-----EEEEcCCCEEEEEEecC------CCeEEEEEEecCCccCCEEEEEECCC
Confidence 346678889999999999999986 2 23467889999999321 123556666 45 9999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCC
Q 041206 108 SNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGG 185 (371)
Q Consensus 108 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg 185 (371)
+++|++|+.|++|++||+....... .. ...+..+..|...|.+++|+|+ +|++|+.|+
T Consensus 70 ~~~las~s~D~~v~iw~~~~~~~~~-~~-------------------~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~ 129 (330)
T 2hes_X 70 TSLLAAGSFDSTVSIWAKEESADRT-FE-------------------MDLLAIIEGHENEVKGVAWSNDGYYLATCSRDK 129 (330)
T ss_dssp SSEEEEEETTSCEEEEEC--------CC-------------------CEEEEEEC----CEEEEEECTTSCEEEEEETTS
T ss_pred CCEEEEEeCCCcEEEEEcccCcCcc-cc-------------------ceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 9999999999999999986422100 00 0011222336668999999998 999999999
Q ss_pred eEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCc--eEEEEeecCCCcEEE
Q 041206 186 VISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNL--ECVQTLKGHSDTVTS 261 (371)
Q Consensus 186 ~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~ 261 (371)
.|++||+.......+++..+.+|. .|.+++|+|++. |+++ +.|++|++||..++ +++..+.+|...|.+
T Consensus 130 ~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~-------s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~ 202 (330)
T 2hes_X 130 SVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASS-------SYDDTVRIWKDYDDDWECVAVLNGHEGTVWS 202 (330)
T ss_dssp CEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEE-------ETTSCEEEEEEETTEEEEEEEECCCSSCEEE
T ss_pred EEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEE-------cCCCeEEEEECCCCCeeEEEEccCCCCcEEE
Confidence 999999965433336677889999 999999999986 8999 99999999999876 678899999999999
Q ss_pred EEEcC----CeEEEEeCCCcEEEEEccCCCC-------------cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCc
Q 041206 262 LLFWD----EYLFSSSLDETIKIWLYTHTKN-------------NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSF 324 (371)
Q Consensus 262 ~~~~~----~~l~s~~~dg~i~iwd~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 324 (371)
++|++ .+|++++.|++|++||+..... ..+...+..+.+.+++ +|++++.||.|++||..++
T Consensus 203 ~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 203 SDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp EEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred EEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 99984 3799999999999999865321 0122345555555555 8999999999999999876
Q ss_pred c--eeeee--cCCc-eEEEEEeCC--CC-eEEeeCCCCcEEEEEccc
Q 041206 325 K--LRARI--FSRR-EVEVDQIGP--AG-LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 325 ~--~~~~~--~~~~-~v~~~~~s~--~~-~l~~~~~dg~i~iw~~~~ 363 (371)
+ ..... .|.. .|.+++|+| ++ +|++|+.||.|++|++..
T Consensus 282 ~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 282 EWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 3 33332 2454 899999999 56 999999999999999865
No 12
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.8e-41 Score=301.09 Aligned_cols=272 Identities=18% Similarity=0.270 Sum_probs=228.4
Q ss_pred cCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC-eeEE--EeecCCEEEE-ecCCcE
Q 041206 83 TNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGA-EIGC--LISEGSWVFL-GLPNAV 158 (371)
Q Consensus 83 ~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~-~~~~~i 158 (371)
.......++|+||.+.|++++|+|++++|+||+.||+|++||+.+++....+..+. .+.+ +.+++.++++ +.|+.+
T Consensus 53 ~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v 132 (380)
T 3iz6_a 53 PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSAC 132 (380)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCC
T ss_pred cceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcE
Confidence 44667889999999999999999999999999999999999999999988887653 3443 3456788877 468999
Q ss_pred EEEEeCC------------------CCeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEE-----ecCc-ce
Q 041206 159 KSWRVNA------------------ASVNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASI-----RAPL-WF 211 (371)
Q Consensus 159 ~~~~~~~------------------~~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-----~~~~-~v 211 (371)
++|++.+ +.|.++.|.|+ .|++|+.|+.|++||+.++ +.+..+ .+|. .|
T Consensus 133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~----~~~~~~~~~~~~~h~~~v 208 (380)
T 3iz6_a 133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG----QRISIFGSEFPSGHTADV 208 (380)
T ss_dssp EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC----CEEEEECCCSSSSCCSCE
T ss_pred EEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC----cEEEEeecccCCCCccCe
Confidence 9999753 35778888875 7999999999999999998 666665 5677 99
Q ss_pred EEEEecC-Cce-eEecccceeeeeCCCeEEEEECC-CceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCC
Q 041206 212 CSLSSSN-DTR-WNSKEEAAVFEFCGHTTRTWNLD-NLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHT 286 (371)
Q Consensus 212 ~~~~~~~-~~~-l~~~~~~~~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~ 286 (371)
.++++++ ++. +++| +.|+.|++||++ ..+.+..+.+|...|.+++|+ +++|++++.|++|++||++..
T Consensus 209 ~~~~~~~~~~~~l~sg-------s~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~ 281 (380)
T 3iz6_a 209 LSLSINSLNANMFISG-------SCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG 281 (380)
T ss_dssp EEEEECSSSCCEEEEE-------ETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT
T ss_pred EEEEeecCCCCEEEEE-------ECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC
Confidence 9999987 554 8899 999999999998 557788999999999999998 679999999999999998765
Q ss_pred CCcc-----------eecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeee-----cCCceEEEEEeCCCC-eEEe
Q 041206 287 KNNA-----------ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARI-----FSRREVEVDQIGPAG-LFFP 349 (371)
Q Consensus 287 ~~~~-----------~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~v~~~~~s~~~-~l~~ 349 (371)
.... ....+..+.+.+++.+|++|+.||.|++||+..++.+..+ .|.+.|++++|+|+| +|++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 361 (380)
T 3iz6_a 282 HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCT 361 (380)
T ss_dssp EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEE
T ss_pred cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEE
Confidence 4211 1112455566667779999999999999999988877665 267899999999999 9999
Q ss_pred eCCCCcEEEEEccccc
Q 041206 350 GDASGSVGVWKWLLAE 365 (371)
Q Consensus 350 ~~~dg~i~iw~~~~~~ 365 (371)
|+.||.|++|++...+
T Consensus 362 gs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 362 GSWDKNLKIWAFSGHR 377 (380)
T ss_dssp ECTTSCEEEEECCSSS
T ss_pred eeCCCCEEEEecCCCc
Confidence 9999999999998653
No 13
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.1e-41 Score=296.71 Aligned_cols=262 Identities=13% Similarity=0.099 Sum_probs=214.1
Q ss_pred eeCccCCeEEEEEcCCCCEEEEEeC------CCcEEEEECCCCceE-----EEEeCCCeeEEEee--cCCEEEEecCCcE
Q 041206 92 LNGHKKAVTNVGLPSGSNKLYSGSR------DGRVSVWDRDSGRCV-----NVITNGAEIGCLIS--EGSWVFLGLPNAV 158 (371)
Q Consensus 92 l~~h~~~V~~~~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~i 158 (371)
..+|+..|++++|+|||++|++|+. |+.|++|+..++... ....+...+.++.+ ++.+++++.++.|
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v 117 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAV 117 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCE
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEE
Confidence 4579999999999999999999997 788999998877543 23345566777764 5677777889999
Q ss_pred EEEEeCCC---------------CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc
Q 041206 159 KSWRVNAA---------------SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT 220 (371)
Q Consensus 159 ~~~~~~~~---------------~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~ 220 (371)
++||+.++ .|.+++|+|+ +|++|+.|+.|++||++++ +.+..+..|. .|++++|++++
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~----~~~~~~~~h~~~v~~v~~s~~~ 193 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK----AVLKSYNAHSSEVNCVAACPGK 193 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTC
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC----cEEEEEcCCCCCEEEEEEccCC
Confidence 99997543 6999999998 9999999999999999998 8899999999 99999999987
Q ss_pred e--eEecccceeeeeCCCeEEEEECCCceEEEEee--cCCCcEEEEEEc---CCeEEEEeCCCcEEEEEccCCCCcc---
Q 041206 221 R--WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLK--GHSDTVTSLLFW---DEYLFSSSLDETIKIWLYTHTKNNA--- 290 (371)
Q Consensus 221 ~--l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~--- 290 (371)
. ++++ +.|+.|++||+++++++..+. .|...+.+++|+ +.+|++++.|+.|++||++..+...
T Consensus 194 ~~~~~s~-------~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~ 266 (357)
T 4g56_B 194 DTIFLSC-------GEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA 266 (357)
T ss_dssp SSCEEEE-------ETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC
T ss_pred Cceeeee-------ccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe
Confidence 3 7888 999999999999988776554 567789999998 4589999999999999988766422
Q ss_pred -eecceEEEEe-cCCCCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCC-CC-eEEeeCCCCcEEEEEcccc
Q 041206 291 -ELSSLFGMLD-AEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGP-AG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 291 -~~~~~~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~-~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
+...+..+.+ ++++++|++++.|++|+|||+++++++..+.|.+.|++++|+| ++ +|++++.||.|++|++...
T Consensus 267 ~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 267 VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 2234455544 5555689999999999999999999888888899999999999 67 9999999999999999754
No 14
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.8e-39 Score=305.20 Aligned_cols=323 Identities=21% Similarity=0.295 Sum_probs=269.6
Q ss_pred cccCCCCceeeccCccc------ccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCc
Q 041206 13 HKHSEGGETMMSDDDDL------MKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSL 86 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d~------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (371)
..++|+|+++++++.|. ..++.+..+.+|...|.+++++|...++. .++.++.+++|+ ...
T Consensus 186 ~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~----~~~~d~~i~~w~---------~~~ 252 (577)
T 2ymu_A 186 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIA----SASDDKTVKLWN---------RNG 252 (577)
T ss_dssp EEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEE----EEETTSCEEEEC---------TTS
T ss_pred eeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEE----EEeCCCEEEEEe---------CCC
Confidence 35899999999988772 35788889999999999999999765432 356788999998 346
Q ss_pred eeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC-CCeeEEEee--cCCEEEE-ecCCcEEEEE
Q 041206 87 ATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN-GAEIGCLIS--EGSWVFL-GLPNAVKSWR 162 (371)
Q Consensus 87 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~-~~~~~i~~~~ 162 (371)
+.+..+.+|...|++++|+|+++.|++++.|+.|++||.. ++....+.. ...+.++.+ ++..+++ +.++.+++|+
T Consensus 253 ~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~ 331 (577)
T 2ymu_A 253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 331 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 7888999999999999999999999999999999999964 566666654 456766654 5677766 5689999999
Q ss_pred eCCC----------CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccc
Q 041206 163 VNAA----------SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEA 228 (371)
Q Consensus 163 ~~~~----------~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~ 228 (371)
.... .+.+++++|+ ++++++.|+.|++||... +.+..+..|. .|.+++|+|+++ ++++
T Consensus 332 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-----~~~~~~~~~~~~v~~~~~s~dg~~l~~~--- 403 (577)
T 2ymu_A 332 RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVRGVAFSPDGQTIASA--- 403 (577)
T ss_dssp TTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-----CEEEEEECCSSCEEEEEECTTSSCEEEE---
T ss_pred CCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-----CEEEEecCCCCCeEEEEECCCCCEEEEE---
Confidence 7543 7899999998 999999999999999643 5778889999 999999999997 8889
Q ss_pred eeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC---cceecceEEEEecCC
Q 041206 229 AVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN---NAELSSLFGMLDAEA 303 (371)
Q Consensus 229 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~ 303 (371)
+.|+.|++||. +++.+..+.+|...|.+++|+ +++|++++.|+.|++||...... ..+...+..+.+.++
T Consensus 404 ----~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd 478 (577)
T 2ymu_A 404 ----SDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPD 478 (577)
T ss_dssp ----ETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTT
T ss_pred ----eCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCC
Confidence 99999999996 567888999999999999998 67999999999999999654321 122235556666777
Q ss_pred CCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccc
Q 041206 304 KPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 304 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~ 363 (371)
+++|++++.|+.|++||. +++++..+. |...|++++|+|++ +|++++.||.|++||...
T Consensus 479 ~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~ 539 (577)
T 2ymu_A 479 GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 539 (577)
T ss_dssp SCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS
T ss_pred CCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC
Confidence 779999999999999996 556666665 68899999999999 999999999999999754
No 15
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.2e-39 Score=282.76 Aligned_cols=282 Identities=18% Similarity=0.324 Sum_probs=241.5
Q ss_pred cceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCE
Q 041206 31 KGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNK 110 (371)
Q Consensus 31 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 110 (371)
...+...+.+|...|.+++++|...++. .++.++.+++|+ ...++....+.+|...|.+++|+|++++
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~----s~~~dg~i~iw~--------~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 79 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLA----SSSADKLIKIWG--------AYDGKFEKTISGHKLGISDVAWSSDSNL 79 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEE----EEETTSCEEEEE--------TTTCCEEEEECCCSSCEEEEEECTTSSE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEE----EeeCCCeEEEEe--------CCCcccchhhccCCCceEEEEEcCCCCE
Confidence 4566788999999999999999766433 357888999999 3456788899999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEE
Q 041206 111 LYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVIS 188 (371)
Q Consensus 111 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~ 188 (371)
|++++.|+.|++||+++++++..+.. |...|.+++|+|+ ++++++.|+.|+
T Consensus 80 l~s~~~d~~i~vwd~~~~~~~~~~~~---------------------------~~~~v~~~~~~~~~~~l~s~~~d~~i~ 132 (312)
T 4ery_A 80 LVSASDDKTLKIWDVSSGKCLKTLKG---------------------------HSNYVFCCNFNPQSNLIVSGSFDESVR 132 (312)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEEC---------------------------CSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred EEEECCCCEEEEEECCCCcEEEEEcC---------------------------CCCCEEEEEEcCCCCEEEEEeCCCcEE
Confidence 99999999999999999988877764 4456899999988 999999999999
Q ss_pred EEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEee-cCCCcEEEEEEc
Q 041206 189 VWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLK-GHSDTVTSLLFW 265 (371)
Q Consensus 189 iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~ 265 (371)
+||++++ +.+..+..|. +|.+++|+|++. ++++ +.|+.|++||+++++.+..+. .+..++..++|+
T Consensus 133 iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~-------~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 201 (312)
T 4ery_A 133 IWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVSS-------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 201 (312)
T ss_dssp EEETTTC----CEEEEECCCSSCEEEEEECTTSSEEEEE-------ETTSCEEEEETTTCCEEEEECCSSCCCEEEEEEC
T ss_pred EEECCCC----EEEEEecCCCCcEEEEEEcCCCCEEEEE-------eCCCcEEEEECCCCceeeEEeccCCCceEEEEEC
Confidence 9999988 7888899998 999999999986 8899 999999999999998887764 466789999998
Q ss_pred --CCeEEEEeCCCcEEEEEccCCCCc-------ceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCce
Q 041206 266 --DEYLFSSSLDETIKIWLYTHTKNN-------AELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRRE 335 (371)
Q Consensus 266 --~~~l~s~~~dg~i~iwd~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~ 335 (371)
+++|++++.|+.|++||++..+.. .....+...+..+++.++++|+.||.|++||+.+++.+..+. |...
T Consensus 202 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~ 281 (312)
T 4ery_A 202 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 281 (312)
T ss_dssp TTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSC
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCc
Confidence 679999999999999998765421 112233344556667799999999999999999999888887 6889
Q ss_pred EEEEEeCCCC-eEEeeC--CCCcEEEEEcc
Q 041206 336 VEVDQIGPAG-LFFPGD--ASGSVGVWKWL 362 (371)
Q Consensus 336 v~~~~~s~~~-~l~~~~--~dg~i~iw~~~ 362 (371)
|.+++|+|++ .+++++ .|+.|++|+..
T Consensus 282 v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 282 VISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9999999999 888876 69999999864
No 16
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8.3e-40 Score=287.80 Aligned_cols=293 Identities=20% Similarity=0.260 Sum_probs=229.0
Q ss_pred ceeEEEEEeecc-ceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCce-eeEeeeCccCCeEEEEEcCCCC
Q 041206 32 GRAEEREEMFGF-GLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLA-TLMKLNGHKKAVTNVGLPSGSN 109 (371)
Q Consensus 32 ~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~l~~h~~~V~~~~~~~~~~ 109 (371)
.+++..+.+|.. .|..++++|...++. .++.++.|++|+... .... ......+|...|++++|+|+++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~la----s~~~D~~i~iw~~~~------~~~~~~~~~~~~h~~~v~~~~~sp~g~ 74 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLA----SCGGDRRIRIWGTEG------DSWICKSVLSEGHQRTVRKVAWSPCGN 74 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEE----EEETTSCEEEEEEET------TEEEEEEEECSSCSSCEEEEEECTTSS
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEE----EEcCCCeEEEEEcCC------CcceeeeeeccccCCcEEEEEECCCCC
Confidence 457788999988 899999999766443 467889999999321 1111 1223478999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCc--eEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCC
Q 041206 110 KLYSGSRDGRVSVWDRDSGR--CVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGG 185 (371)
Q Consensus 110 ~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg 185 (371)
+|++|+.|++|++||+.++. ++..+.. |...|.+++|+|+ +|++++.|+
T Consensus 75 ~l~s~s~D~~v~iw~~~~~~~~~~~~~~~---------------------------h~~~v~~v~~sp~~~~l~s~s~D~ 127 (345)
T 3fm0_A 75 YLASASFDATTCIWKKNQDDFECVTTLEG---------------------------HENEVKSVAWAPSGNLLATCSRDK 127 (345)
T ss_dssp EEEEEETTSCEEEEEECCC-EEEEEEECC---------------------------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCCcEEEEEccCCCeEEEEEccC---------------------------CCCCceEEEEeCCCCEEEEEECCC
Confidence 99999999999999988764 3333432 5567999999998 999999999
Q ss_pred eEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCce--EEEEeecCCCcEEE
Q 041206 186 VISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLE--CVQTLKGHSDTVTS 261 (371)
Q Consensus 186 ~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~ 261 (371)
.|++||+..... ...+..+..|. .|.+++|+|++. ++++ +.|+.|++||+++++ +...+.+|...|.+
T Consensus 128 ~v~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~p~~~~l~s~-------s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~ 199 (345)
T 3fm0_A 128 SVWVWEVDEEDE-YECVSVLNSHTQDVKHVVWHPSQELLASA-------SYDDTVKLYREEEDDWVCCATLEGHESTVWS 199 (345)
T ss_dssp CEEEEEECTTSC-EEEEEEECCCCSCEEEEEECSSSSCEEEE-------ETTSCEEEEEEETTEEEEEEEECCCSSCEEE
T ss_pred eEEEEECCCCCC-eEEEEEecCcCCCeEEEEECCCCCEEEEE-------eCCCcEEEEEecCCCEEEEEEecCCCCceEE
Confidence 999999987532 24566788888 999999999986 8899 999999999998875 45788999999999
Q ss_pred EEEc--CCeEEEEeCCCcEEEEEccCCCCcc--------------------eecceEEEEecCCCCEEEEecCCCeEEEE
Q 041206 262 LLFW--DEYLFSSSLDETIKIWLYTHTKNNA--------------------ELSSLFGMLDAEAKPVLFSSGKDSAIRLY 319 (371)
Q Consensus 262 ~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~--------------------~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 319 (371)
++|+ +++|++++.|++|++||........ +...+..+.+.+.+..|++++.|+.|++|
T Consensus 200 l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw 279 (345)
T 3fm0_A 200 LAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVF 279 (345)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred EEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEE
Confidence 9999 6799999999999999965432210 12234555566666689999999999999
Q ss_pred EcCCcc--------eeeee--cCCceEEEEEeCCCC--eEEeeCCCCcEEEEEccccceecc
Q 041206 320 ELPSFK--------LRARI--FSRREVEVDQIGPAG--LFFPGDASGSVGVWKWLLAEQQKM 369 (371)
Q Consensus 320 d~~~~~--------~~~~~--~~~~~v~~~~~s~~~--~l~~~~~dg~i~iw~~~~~~~~~~ 369 (371)
+..... ..... .|...|++++|+|++ +|++|+.||.|++|++.+++....
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 280 QEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp EECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC------
T ss_pred EeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence 987643 11122 267899999999987 899999999999999988765543
No 17
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.6e-40 Score=290.14 Aligned_cols=272 Identities=17% Similarity=0.149 Sum_probs=204.8
Q ss_pred cccCCCCceeeccCcccc-----------------cceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEe
Q 041206 13 HKHSEGGETMMSDDDDLM-----------------KGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVH 75 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d~~-----------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 75 (371)
.+|+|||++|++++++.. ..........|..+|.+++|++.+.++. ++.++.|++|+.
T Consensus 36 ~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~-----~s~dg~v~lWd~ 110 (344)
T 4gqb_B 36 ARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILV-----ASDSGAVELWEL 110 (344)
T ss_dssp EEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEE-----EETTSEEEEEEE
T ss_pred EEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEE-----EECCCEEEEEec
Confidence 359999999998874310 1122233445778899999999876554 677899999994
Q ss_pred ccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecC
Q 041206 76 SVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLP 155 (371)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (371)
... .........+.+|.+.|++++|+|++++|++|+.|++|++||+++++++..+..
T Consensus 111 ~~~----~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~------------------- 167 (344)
T 4gqb_B 111 DEN----ETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRA------------------- 167 (344)
T ss_dssp CTT----SSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-------------------
T ss_pred cCC----CceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-------------------
Confidence 211 001122345669999999999999999999999999999999999998888765
Q ss_pred CcEEEEEeCCCCeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEe--cCc-ceEEEEecCCc-e-eEeccc
Q 041206 156 NAVKSWRVNAASVNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIR--APL-WFCSLSSSNDT-R-WNSKEE 227 (371)
Q Consensus 156 ~~i~~~~~~~~~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~~~-~v~~~~~~~~~-~-l~~~~~ 227 (371)
|+..|.+++|+++ ++++++.|+.|++||++++ ++...+. .+. .+.+++|+|++ + +++|
T Consensus 168 --------h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg-- 233 (344)
T 4gqb_B 168 --------HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP----KPASQIGCSAPGYLPTSLAWHPQQSEVFVFG-- 233 (344)
T ss_dssp --------CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS----SCEEECC----CCCEEEEEECSSCTTEEEEE--
T ss_pred --------cCCceEEEEecCCCCCceeeecccccccccccccc----ceeeeeecceeeccceeeeecCCCCcceEEe--
Confidence 5557999999886 7899999999999999988 5555554 334 78999999965 4 7888
Q ss_pred ceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCCcceecceEEEEecCCCCEE
Q 041206 228 AAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKNNAELSSLFGMLDAEAKPVL 307 (371)
Q Consensus 228 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~l 307 (371)
+.|+.|++||+++++++..+.+|...|++++|++ ++.++|
T Consensus 234 -----~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp-----------------------------------~g~~~l 273 (344)
T 4gqb_B 234 -----DENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSP-----------------------------------HSVPFL 273 (344)
T ss_dssp -----ETTSEEEEEESCC--CCEEEECCSSCEEEEEECS-----------------------------------SSSCCE
T ss_pred -----ccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEcc-----------------------------------CCCeEE
Confidence 9999999999999999999999999999998862 111234
Q ss_pred EEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC--eEEeeCCCCcEEEEEccccce
Q 041206 308 FSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG--LFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 308 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~--~l~~~~~dg~i~iw~~~~~~~ 366 (371)
++++.|++|+|||+.++++.....|.+.|++++|+|++ +|++|+.||+|++|++.++..
T Consensus 274 asgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 274 ASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 44555555555555555444333478899999999998 678999999999999987543
No 18
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=8e-39 Score=280.63 Aligned_cols=291 Identities=17% Similarity=0.238 Sum_probs=234.7
Q ss_pred ccceeEEEEEeeccceeeeeeeecc-eeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCC
Q 041206 30 MKGRAEEREEMFGFGLAAMAIRVCN-NWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGS 108 (371)
Q Consensus 30 ~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~ 108 (371)
...++...|+||.+.|.+++++|.. .++ ++++.|+.|++|++... ......+.+.+++|...|.+++|+|++
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l----~S~s~D~~i~vWd~~~~---~~~~~~~~~~l~~h~~~V~~~~~s~dg 98 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMI----LSASRDKTIIMWKLTRD---ETNYGIPQRALRGHSHFVSDVVISSDG 98 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEE----EEEETTSCEEEEEECCS---SSCSEEEEEEECCCSSCEEEEEECTTS
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEE----EEEcCCCeEEEEECCCC---CcccceeeEEEeCCCCCEEEEEECCCC
Confidence 3456777899999999999999853 222 23678999999995432 122345678899999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCe
Q 041206 109 NKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGV 186 (371)
Q Consensus 109 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~ 186 (371)
++|++++.|+.|++|+............. ...+..+.+.+. .+++++.|+.
T Consensus 99 ~~l~s~~~d~~i~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~l~s~s~d~~ 151 (340)
T 4aow_A 99 QFALSGSWDGTLRLWDLTTGTTTRRFVGH---------------------------TKDVLSVAFSSDNRQIVSGSRDKT 151 (340)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECC---------------------------SSCEEEEEECTTSSCEEEEETTSC
T ss_pred CEEEEEcccccceEEeecccceeeeecCC---------------------------CCceeEEEEeecCccceeecCCCe
Confidence 99999999999999999988776665542 224666777766 8999999999
Q ss_pred EEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce---eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEE
Q 041206 187 ISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR---WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSL 262 (371)
Q Consensus 187 v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~---l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 262 (371)
+++||+.... ........|. .+..+++++++. ++++ +.|+.|++||+++++++..+.+|..+|+++
T Consensus 152 ~~~~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~-------~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~ 221 (340)
T 4aow_A 152 IKLWNTLGVC---KYTVQDESHSEWVSCVRFSPNSSNPIIVSC-------GWDKLVKVWNLANCKLKTNHIGHTGYLNTV 221 (340)
T ss_dssp EEEECTTSCE---EEEECSSSCSSCEEEEEECSCSSSCEEEEE-------ETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred EEEEEeCCCc---eEEEEeccccCcccceEEccCCCCcEEEEE-------cCCCEEEEEECCCCceeeEecCCCCcEEEE
Confidence 9999987652 3344456677 999999998753 6788 999999999999999999999999999999
Q ss_pred EEc--CCeEEEEeCCCcEEEEEccCCCCccee---cceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec------
Q 041206 263 LFW--DEYLFSSSLDETIKIWLYTHTKNNAEL---SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF------ 331 (371)
Q Consensus 263 ~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------ 331 (371)
+|+ +++|++++.|+.|++||++..+..... ..+..+.+.+++ .+++++.|+.|++||++++..+..+.
T Consensus 222 ~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 300 (340)
T 4aow_A 222 TVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNR-YWLCAATGPSIKIWDLEGKIIVDELKQEVIST 300 (340)
T ss_dssp EECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSS-SEEEEEETTEEEEEETTTTEEEEEECCC----
T ss_pred EECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCC-ceeeccCCCEEEEEECCCCeEEEeccccceee
Confidence 998 679999999999999998876542221 245555666666 56677789999999999887665543
Q ss_pred ----CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccc
Q 041206 332 ----SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 332 ----~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~ 365 (371)
+...|++++|+|++ +|++|+.||.|+|||+.++.
T Consensus 301 ~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 301 SSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ---CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred eccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 36789999999999 99999999999999999874
No 19
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.7e-38 Score=279.32 Aligned_cols=289 Identities=15% Similarity=0.186 Sum_probs=227.5
Q ss_pred cceeEEEEEeeccceeeeee-----ee-cceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEE
Q 041206 31 KGRAEEREEMFGFGLAAMAI-----RV-CNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGL 104 (371)
Q Consensus 31 ~~~~~~~~~~h~~~v~~~~~-----~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~ 104 (371)
..++...+++|.+.|.++++ ++ ... ...+++.|+.|++|+...... ....+.+...+.+|...|++++|
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~----~l~sgs~D~~v~iWd~~~~~~-~~~~~~~~~~l~~h~~~V~~~~~ 84 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSP----VLISGSRDKTVMIWKLYEEEQ-NGYFGIPHKALTGHNHFVSDLAL 84 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCC----EEEEEETTSCEEEEEECSSCC-SSBSEEEEEEECCCSSCEEEEEE
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCC----EEEEEcCCCEEEEEECCcCCc-ccccccccchhccCCCceEEEEE
Confidence 45567789999999999998 33 222 233578899999999542210 11134567889999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEe
Q 041206 105 PSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGS 182 (371)
Q Consensus 105 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~ 182 (371)
+|++.+|++|+.|++|++||+++++.+..+.. |...|.+++|+|+ +|++++
T Consensus 85 ~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~---------------------------h~~~v~~v~~sp~~~~l~s~~ 137 (343)
T 2xzm_R 85 SQENCFAISSSWDKTLRLWDLRTGTTYKRFVG---------------------------HQSEVYSVAFSPDNRQILSAG 137 (343)
T ss_dssp CSSTTEEEEEETTSEEEEEETTSSCEEEEEEC---------------------------CCSCEEEEEECSSTTEEEEEE
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCcEEEEEcC---------------------------CCCcEEEEEECCCCCEEEEEc
Confidence 99999999999999999999999988877664 5557999999998 999999
Q ss_pred CCCeEEEEeccCCCCcceeeEEEe---cCc-ceEEEEecCCc-----------eeEecccceeeeeCCCeEEEEECCCce
Q 041206 183 EGGVISVWKGTFVANPFKQVASIR---APL-WFCSLSSSNDT-----------RWNSKEEAAVFEFCGHTTRTWNLDNLE 247 (371)
Q Consensus 183 ~dg~v~iwd~~~~~~~~~~~~~~~---~~~-~v~~~~~~~~~-----------~l~~~~~~~~~~~~dg~i~iwd~~~~~ 247 (371)
.|+.|++||+... ...... .|. .|.+++|+|++ .++++ +.|+.|++||. +.+
T Consensus 138 ~d~~i~~wd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~-------~~d~~i~iwd~-~~~ 204 (343)
T 2xzm_R 138 AEREIKLWNILGE-----CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV-------GWDGRLKVWNT-NFQ 204 (343)
T ss_dssp TTSCEEEEESSSC-----EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEE-------ETTSEEEEEET-TTE
T ss_pred CCCEEEEEeccCC-----ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEE-------cCCCEEEEEcC-CCc
Confidence 9999999999743 222222 566 89999999975 37777 99999999994 567
Q ss_pred EEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC-cce---ecceEEEEecCCCCEEEEecCCCeEEEEEc
Q 041206 248 CVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN-NAE---LSSLFGMLDAEAKPVLFSSGKDSAIRLYEL 321 (371)
Q Consensus 248 ~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~-~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 321 (371)
....+.+|...|.+++|+ +++|++++.|+.|++||+..... ... ...+..+.+.+++.+++ ++.|+.|++||+
T Consensus 205 ~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~ 283 (343)
T 2xzm_R 205 IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVA-VGTDQGVKIFNL 283 (343)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEE-EEESSCEEEEES
T ss_pred eeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEE-EECCCCEEEEEe
Confidence 778899999999999998 67999999999999999844332 111 12355666666665665 456788999999
Q ss_pred CCcceee--ee------------cCCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccc
Q 041206 322 PSFKLRA--RI------------FSRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 322 ~~~~~~~--~~------------~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~ 365 (371)
.+++... .+ .+...|.+++|+|++ +|++|+.||.|++|++.++.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 284 MTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp SSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred CCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 8765433 22 245679999999999 99999999999999997653
No 20
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1e-38 Score=280.26 Aligned_cols=247 Identities=17% Similarity=0.241 Sum_probs=216.6
Q ss_pred ceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCC
Q 041206 86 LATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNA 165 (371)
Q Consensus 86 ~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 165 (371)
.+...++++|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+.. +.
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~---------------------------~~ 97 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL---------------------------RS 97 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC---------------------------SS
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeec---------------------------CC
Confidence 466789999999999999999999999999999999999999988877764 44
Q ss_pred CCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEE
Q 041206 166 ASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWN 242 (371)
Q Consensus 166 ~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd 242 (371)
..|.+++|+|+ ++++|+.|+.|++|++.+..........+.+|. .|.++.|+++++++++ +.|+.|++||
T Consensus 98 ~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~-------s~d~~i~~wd 170 (340)
T 1got_B 98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-------SGDTTCALWD 170 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEE-------ETTSCEEEEE
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEE-------ECCCcEEEEE
Confidence 56999999998 999999999999999987654445677888999 9999999999999999 9999999999
Q ss_pred CCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCc----ceecceEEEEecCCCCEEEEecCCCeE
Q 041206 243 LDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNN----AELSSLFGMLDAEAKPVLFSSGKDSAI 316 (371)
Q Consensus 243 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~i 316 (371)
+++++++..+.+|...|.+++|+ ++++++++.|+.|++||++..... .+...+..+.+.+++.+|++++.|+.|
T Consensus 171 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v 250 (340)
T 1got_B 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250 (340)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcE
Confidence 99999999999999999999998 579999999999999998876532 223356666677777799999999999
Q ss_pred EEEEcCCcceeeeecCC---ceEEEEEeCCCC-eEEeeCCCCcEEEEEccccce
Q 041206 317 RLYELPSFKLRARIFSR---REVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 317 ~iwd~~~~~~~~~~~~~---~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~ 366 (371)
++||+++++.+..+.+. ..|.+++|+|++ +|++|+.||.|++||+.+.+.
T Consensus 251 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~ 304 (340)
T 1got_B 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304 (340)
T ss_dssp EEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred EEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcE
Confidence 99999998887776643 479999999999 999999999999999977654
No 21
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.1e-38 Score=283.89 Aligned_cols=275 Identities=15% Similarity=0.257 Sum_probs=225.2
Q ss_pred eeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccC------------------CeEE
Q 041206 40 MFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKK------------------AVTN 101 (371)
Q Consensus 40 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~------------------~V~~ 101 (371)
+|...|.+++|+|...+++. +.++.+++|+ ...++.+..+.+|.. .|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~-----g~~~~v~i~~--------~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~ 128 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLAT-----GCNKTTQVYR--------VSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRS 128 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEE-----ECBSCEEEEE--------TTTCCEEEEECC-----------------CCCCBEEE
T ss_pred CCCCEEEEEEECCCCCEEEE-----EcCCcEEEEE--------ecCCCEEEEecCccccccccccccccccCCCceeEEE
Confidence 69999999999998876652 2246789999 345566666666542 4999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEE
Q 041206 102 VGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLF 179 (371)
Q Consensus 102 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~ 179 (371)
++|+|++++|++|+.|++|++||+.+++.+..+.. |...|.+++|+|+ +|+
T Consensus 129 v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------------------------h~~~v~~~~~~p~~~~l~ 181 (393)
T 1erj_A 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG---------------------------HEQDIYSLDYFPSGDKLV 181 (393)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---------------------------CSSCEEEEEECTTSSEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc---------------------------CCCCEEEEEEcCCCCEEE
Confidence 99999999999999999999999999988777664 4557999999988 999
Q ss_pred EEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecC-Cce-eEecccceeeeeCCCeEEEEECCCceEEEEe-----
Q 041206 180 AGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSN-DTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTL----- 252 (371)
Q Consensus 180 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~----- 252 (371)
+++.|+.|++||++++ +....+..+..+.+++++| +++ ++++ +.|+.|++||+++++.+..+
T Consensus 182 s~s~d~~v~iwd~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~-------s~d~~v~iwd~~~~~~~~~~~~~~~ 250 (393)
T 1erj_A 182 SGSGDRTVRIWDLRTG----QCSLTLSIEDGVTTVAVSPGDGKYIAAG-------SLDRAVRVWDSETGFLVERLDSENE 250 (393)
T ss_dssp EEETTSEEEEEETTTT----EEEEEEECSSCEEEEEECSTTCCEEEEE-------ETTSCEEEEETTTCCEEEEEC----
T ss_pred EecCCCcEEEEECCCC----eeEEEEEcCCCcEEEEEECCCCCEEEEE-------cCCCcEEEEECCCCcEEEeeccccc
Confidence 9999999999999988 6666666555999999999 675 8899 99999999999999888776
Q ss_pred --ecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC----------------cceecceEEEEecCCCCEEEEecC
Q 041206 253 --KGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN----------------NAELSSLFGMLDAEAKPVLFSSGK 312 (371)
Q Consensus 253 --~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~~~~~~~~~l~~~~~ 312 (371)
.+|...|.+++|+ +++|++++.|+.|++||++.... ..+...+..+.+.+++.+|++++.
T Consensus 251 ~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~ 330 (393)
T 1erj_A 251 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK 330 (393)
T ss_dssp --CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET
T ss_pred CCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC
Confidence 5799999999998 67999999999999999875431 011223455556666679999999
Q ss_pred CCeEEEEEcCCcceeeeec-CCceEEEEEeCC------CC-eEEeeCCCCcEEEEEccccc
Q 041206 313 DSAIRLYELPSFKLRARIF-SRREVEVDQIGP------AG-LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 313 d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~------~~-~l~~~~~dg~i~iw~~~~~~ 365 (371)
|+.|++||+.+++++..+. |...|.+++|+| ++ +|++|+.||.|++|++...+
T Consensus 331 D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~~ 391 (393)
T 1erj_A 331 DRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIA 391 (393)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC-
T ss_pred CCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccccC
Confidence 9999999999999888776 688999999886 57 99999999999999997643
No 22
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=8.1e-38 Score=273.66 Aligned_cols=301 Identities=16% Similarity=0.176 Sum_probs=246.0
Q ss_pred cccCCCCceeeccCccc-------ccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCC
Q 041206 13 HKHSEGGETMMSDDDDL-------MKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNS 85 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d~-------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (371)
-.|||||++++++..+. ..........+|...|.+++++|...++. .++ ++.+++|+.... ..
T Consensus 15 ~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~----~~~-dg~i~iw~~~~~-----~~ 84 (337)
T 1gxr_A 15 FHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVY----TGG-KGCVKVWDISHP-----GN 84 (337)
T ss_dssp EEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEE----EEC-BSEEEEEETTST-----TC
T ss_pred EEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEE----EcC-CCeEEEEECCCC-----Cc
Confidence 56899999998776441 12223333458999999999999776544 234 789999994321 12
Q ss_pred ceeeEeee--CccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--EEEEeCCCeeEEEeecCCEEEEecCCcEEEE
Q 041206 86 LATLMKLN--GHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRC--VNVITNGAEIGCLISEGSWVFLGLPNAVKSW 161 (371)
Q Consensus 86 ~~~~~~l~--~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 161 (371)
...+..+. +|...|++++|+|++++|++++.||.|++||+.+++. ...+.
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-------------------------- 138 (337)
T 1gxr_A 85 KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT-------------------------- 138 (337)
T ss_dssp CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE--------------------------
T ss_pred eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecc--------------------------
Confidence 22334444 8999999999999999999999999999999998763 33333
Q ss_pred EeCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCe
Q 041206 162 RVNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHT 237 (371)
Q Consensus 162 ~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~ 237 (371)
.+...+.+++|+|+ ++++++.||.|++||++++ +....+..|. .+.+++|+|++. ++++ +.|+.
T Consensus 139 -~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~-------~~dg~ 206 (337)
T 1gxr_A 139 -SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ----TLVRQFQGHTDGASCIDISNDGTKLWTG-------GLDNT 206 (337)
T ss_dssp -CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEE-------ETTSE
T ss_pred -cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC----ceeeeeecccCceEEEEECCCCCEEEEE-------ecCCc
Confidence 24556999999987 8999999999999999988 8888899888 999999999985 8888 99999
Q ss_pred EEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC---cceecceEEEEecCCCCEEEEecC
Q 041206 238 TRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN---NAELSSLFGMLDAEAKPVLFSSGK 312 (371)
Q Consensus 238 i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~ 312 (371)
|++||+++++.+..+. +...+.+++|+ ++++++++.|+.|++||++..+. ..+...+..+.+.+++++|++++.
T Consensus 207 i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 285 (337)
T 1gxr_A 207 VRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK 285 (337)
T ss_dssp EEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecC
Confidence 9999999999888775 78899999998 67999999999999999887653 122234566667777779999999
Q ss_pred CCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEcc
Q 041206 313 DSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 313 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~ 362 (371)
||.|++||+.+++.+....+...+.+++|+|++ +|++++.||.|++|++.
T Consensus 286 dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 286 DNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred CCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 999999999999988777788999999999999 99999999999999974
No 23
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.2e-39 Score=289.86 Aligned_cols=243 Identities=19% Similarity=0.287 Sum_probs=212.9
Q ss_pred eeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCC
Q 041206 87 ATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAA 166 (371)
Q Consensus 87 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 166 (371)
.....+.+|.++|++++|+|++++|++|+.||+|++||+.+++....+.. |+.
T Consensus 99 ~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~---------------------------h~~ 151 (410)
T 1vyh_C 99 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG---------------------------HTD 151 (410)
T ss_dssp SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECC---------------------------CSS
T ss_pred CceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEec---------------------------cCC
Confidence 34567899999999999999999999999999999999999988877764 555
Q ss_pred CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEE
Q 041206 167 SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWN 242 (371)
Q Consensus 167 ~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd 242 (371)
.|.+++|+|+ +|++|+.|+.|++||+.+. +.+..+.+|. .|.+++|+|++. ++++ +.|+.|++||
T Consensus 152 ~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~----~~~~~~~~h~~~V~~v~~~p~~~~l~s~-------s~D~~i~~wd 220 (410)
T 1vyh_C 152 SVQDISFDHSGKLLASCSADMTIKLWDFQGF----ECIRTMHGHDHNVSSVSIMPNGDHIVSA-------SRDKTIKMWE 220 (410)
T ss_dssp CEEEEEECTTSSEEEEEETTSCCCEEETTSS----CEEECCCCCSSCEEEEEECSSSSEEEEE-------ETTSEEEEEE
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceeEEEcCCCCCEEEEEEeCCCCEEEEE-------eCCCeEEEEE
Confidence 7999999987 9999999999999999987 7888899999 999999999986 8999 9999999999
Q ss_pred CCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcc----eecceEEEEecCC-------------
Q 041206 243 LDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNA----ELSSLFGMLDAEA------------- 303 (371)
Q Consensus 243 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~------------- 303 (371)
+++++++..+.+|...|.++.++ +.+|++++.|++|++||+...+... +...+..+.+.+.
T Consensus 221 ~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 300 (410)
T 1vyh_C 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 300 (410)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred CCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcccc
Confidence 99999999999999999999998 6799999999999999987765321 1223444444332
Q ss_pred -------CCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccccee
Q 041206 304 -------KPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 304 -------~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~ 367 (371)
+.+|++|+.|+.|++||+++++++..+. |...|++++|+|++ +|++|+.||.|++||+.+++..
T Consensus 301 ~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~ 373 (410)
T 1vyh_C 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM 373 (410)
T ss_dssp -------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC
T ss_pred ccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 4589999999999999999999888876 67899999999999 9999999999999999876543
No 24
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.6e-37 Score=279.76 Aligned_cols=301 Identities=19% Similarity=0.311 Sum_probs=255.8
Q ss_pred eeEEEEEeeccce-eeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEE
Q 041206 33 RAEEREEMFGFGL-AAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKL 111 (371)
Q Consensus 33 ~~~~~~~~h~~~v-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 111 (371)
+....+.+|.+.+ .++.+. .. ....++.++.|++|+ ..+++.+..+.+|.+.|.+++|+ +++|
T Consensus 109 ~~~~~l~~h~~~v~~~~~~~--g~----~l~sg~~dg~i~vwd--------~~~~~~~~~~~~h~~~v~~~~~~--~~~l 172 (445)
T 2ovr_B 109 KSPKVLKGHDDHVITCLQFC--GN----RIVSGSDDNTLKVWS--------AVTGKCLRTLVGHTGGVWSSQMR--DNII 172 (445)
T ss_dssp CCCEEEECSTTSCEEEEEEE--TT----EEEEEETTSCEEEEE--------TTTCCEEEECCCCSSCEEEEEEE--TTEE
T ss_pred ceeEEecccCCCcEEEEEEc--CC----EEEEEECCCcEEEEE--------CCCCcEEEEEcCCCCCEEEEEec--CCEE
Confidence 3456789999875 554443 22 233467889999999 45678899999999999999998 5699
Q ss_pred EEEeCCCcEEEEECCCCceEEEEeC-CCeeEEEeecCCEEEE-ecCCcEEEEEeCCC-----------CeeEEEEeCCEE
Q 041206 112 YSGSRDGRVSVWDRDSGRCVNVITN-GAEIGCLISEGSWVFL-GLPNAVKSWRVNAA-----------SVNALVVNNDLL 178 (371)
Q Consensus 112 ~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~-----------~v~~~~~~~~~l 178 (371)
++|+.||+|++||+.+++.+..+.. ...+.++.+++..+++ +.++.|++||+.++ .|.+++++++.+
T Consensus 173 ~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l 252 (445)
T 2ovr_B 173 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRV 252 (445)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCE
T ss_pred EEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEE
Confidence 9999999999999999999988875 4668888888877776 56899999998755 788999977799
Q ss_pred EEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc-eeEecccceeeeeCCCeEEEEECCCceEEEEeecCC
Q 041206 179 FAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT-RWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHS 256 (371)
Q Consensus 179 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~ 256 (371)
++++.||.|++||++++ +.+..+..|. .|.++++ ++ .++++ +.|+.|++||+++++++..+.+|.
T Consensus 253 ~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~--~~~~l~~~-------~~d~~i~i~d~~~~~~~~~~~~~~ 319 (445)
T 2ovr_B 253 VSGAYDFMVKVWDPETE----TCLHTLQGHTNRVYSLQF--DGIHVVSG-------SLDTSIRVWDVETGNCIHTLTGHQ 319 (445)
T ss_dssp EEEETTSCEEEEEGGGT----EEEEEECCCSSCEEEEEE--CSSEEEEE-------ETTSCEEEEETTTCCEEEEECCCC
T ss_pred EEEcCCCEEEEEECCCC----cEeEEecCCCCceEEEEE--CCCEEEEE-------eCCCeEEEEECCCCCEEEEEcCCc
Confidence 99999999999999998 8889999998 9999999 44 58899 999999999999999999999999
Q ss_pred CcEEEEEEcCCeEEEEeCCCcEEEEEccCCCCcc-------eecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeee
Q 041206 257 DTVTSLLFWDEYLFSSSLDETIKIWLYTHTKNNA-------ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRAR 329 (371)
Q Consensus 257 ~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 329 (371)
..+.++.++++++++++.||.|++||++..+... +...+..+.+. +.++++++.||.|++||+.+++.+..
T Consensus 320 ~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~ 397 (445)
T 2ovr_B 320 SLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRN 397 (445)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeee
Confidence 9999999999999999999999999987655321 22345545443 45999999999999999999998887
Q ss_pred e------cCCceEEEEEeCCCC-eEEeeCCCCc----EEEEEcccc
Q 041206 330 I------FSRREVEVDQIGPAG-LFFPGDASGS----VGVWKWLLA 364 (371)
Q Consensus 330 ~------~~~~~v~~~~~s~~~-~l~~~~~dg~----i~iw~~~~~ 364 (371)
+ .+.+.|++++|+|++ .+++|+.||. |.+||+...
T Consensus 398 ~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 398 LVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred eeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 7 357899999999999 9999999998 999999754
No 25
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=270.96 Aligned_cols=247 Identities=18% Similarity=0.188 Sum_probs=209.9
Q ss_pred ceeeEeeeCccCCeEEEEEcCC----CCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEE
Q 041206 86 LATLMKLNGHKKAVTNVGLPSG----SNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSW 161 (371)
Q Consensus 86 ~~~~~~l~~h~~~V~~~~~~~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 161 (371)
+.+.+.+++|.+.|++++|+|+ +++|+||+.|++|++||+.+++...... .
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~-------------------------l 76 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWS-------------------------L 76 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEE-------------------------E
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeee-------------------------e
Confidence 4556778899999999999874 5799999999999999998765432211 1
Q ss_pred EeCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCe
Q 041206 162 RVNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHT 237 (371)
Q Consensus 162 ~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~ 237 (371)
..|...|.+++++++ .+++++.|+.|++||+.++ +.+..+..+. .+.+++|+|+++ ++++ +.|+.
T Consensus 77 ~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~----~~~~~~~~~~~~~~~~~~spdg~~l~~g-------~~dg~ 145 (321)
T 3ow8_A 77 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG----KQIKSIDAGPVDAWTLAFSPDSQYLATG-------THVGK 145 (321)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT----EEEEEEECCTTCCCCEEECTTSSEEEEE-------CTTSE
T ss_pred ccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC----CEEEEEeCCCccEEEEEECCCCCEEEEE-------cCCCc
Confidence 125567999999988 9999999999999999998 8888888888 999999999996 8899 99999
Q ss_pred EEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCc----ceecceEEEEecCCCCEEEEec
Q 041206 238 TRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNN----AELSSLFGMLDAEAKPVLFSSG 311 (371)
Q Consensus 238 i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~ 311 (371)
|++||+++++....+..|...|.+++|+ +++|++++.|+.|++||++..+.. .+...+..+.+.+++.+|++++
T Consensus 146 v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s 225 (321)
T 3ow8_A 146 VNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS 225 (321)
T ss_dssp EEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC
T ss_pred EEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc
Confidence 9999999999999999999999999998 689999999999999998876532 2223455566666777999999
Q ss_pred CCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccceec
Q 041206 312 KDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 312 ~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
.|+.|++||+++++....+. |...|.+++|+|++ +|++++.||.|++||+.+++...
T Consensus 226 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~ 284 (321)
T 3ow8_A 226 DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVH 284 (321)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred CCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEE
Confidence 99999999999998888776 67889999999999 99999999999999998776543
No 26
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.5e-38 Score=275.36 Aligned_cols=253 Identities=13% Similarity=0.101 Sum_probs=196.1
Q ss_pred eCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEE
Q 041206 93 NGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALV 172 (371)
Q Consensus 93 ~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~ 172 (371)
..|...|.+++|+|||++|++++ |+++++||.. +..+...... + ..+.....-.+...|.+++
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~----~~~~~~~~~~----~--------~~~~~~~~~~~~~~v~~~~ 89 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGS----LWLFKDPCAA----P--------NEGFCSAGVQTEAGVADLT 89 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEE----EEEESSGGGT----T--------CGGGCSEEEEESSCEEEEE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeece----eeeecccccc----C--------CcceeeeeeccCCCEEEEE
Confidence 35778899999999999999888 7789999732 1111100000 0 0000000001234699999
Q ss_pred EeCC-EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEE
Q 041206 173 VNND-LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECV 249 (371)
Q Consensus 173 ~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~ 249 (371)
|+++ .+++|+.||.|++||+.++.........+.+|. .|++++|+|+++ |++| +.|++|++||+++++++
T Consensus 90 ~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sg-------s~d~~i~iwd~~~~~~~ 162 (344)
T 4gqb_B 90 WVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSG-------SKDICIKVWDLAQQVVL 162 (344)
T ss_dssp EETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEE-------ETTSCEEEEETTTTEEE
T ss_pred EeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEE-------eCCCeEEEEECCCCcEE
Confidence 9998 999999999999999998854333344566888 999999999996 8999 99999999999999999
Q ss_pred EEeecCCCcEEEEEEc--C-CeEEEEeCCCcEEEEEccCCCCccee------cceEE-EEecCCCCEEEEecCCCeEEEE
Q 041206 250 QTLKGHSDTVTSLLFW--D-EYLFSSSLDETIKIWLYTHTKNNAEL------SSLFG-MLDAEAKPVLFSSGKDSAIRLY 319 (371)
Q Consensus 250 ~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~~-~~~~~~~~~l~~~~~d~~i~iw 319 (371)
..+.+|...|.+++|+ + .+|++++.|++|++||++..+....+ ..+.. .+.+.++.+|++|+.|+.|++|
T Consensus 163 ~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~w 242 (344)
T 4gqb_B 163 SSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLV 242 (344)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred EEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEE
Confidence 9999999999999998 3 57899999999999999877643221 12333 3555677799999999999999
Q ss_pred EcCCcceeeeec-CCceEEEEEeCCCC--eEEeeCCCCcEEEEEccccceecc
Q 041206 320 ELPSFKLRARIF-SRREVEVDQIGPAG--LFFPGDASGSVGVWKWLLAEQQKM 369 (371)
Q Consensus 320 d~~~~~~~~~~~-~~~~v~~~~~s~~~--~l~~~~~dg~i~iw~~~~~~~~~~ 369 (371)
|+++++++..+. |...|++++|+|++ +|++|+.||+|+|||+.++++.+.
T Consensus 243 d~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~ 295 (344)
T 4gqb_B 243 DTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS 295 (344)
T ss_dssp ESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE
Confidence 999999888887 68899999999998 799999999999999998776543
No 27
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.2e-36 Score=287.90 Aligned_cols=333 Identities=11% Similarity=0.101 Sum_probs=267.6
Q ss_pred cccCCCCceeeccCccc---------ccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCcc
Q 041206 13 HKHSEGGETMMSDDDDL---------MKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTT 83 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d~---------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (371)
..|+|+|++|++++.+. ..++.+..+.+|...|.+++++|.... ....++.++.+++|+ .
T Consensus 122 ~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~---~l~~~~~d~~v~vwd--------~ 190 (615)
T 1pgu_A 122 ISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPM---RSMTVGDDGSVVFYQ--------G 190 (615)
T ss_dssp EEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSC---EEEEEETTTEEEEEE--------T
T ss_pred EEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCc---EEEEEeCCCcEEEEe--------C
Confidence 35899999999887652 246778889999999999999997642 122367789999999 4
Q ss_pred CCceeeEeeeCccC---CeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEE-----eCCCeeEEEee-cCCEEEE-
Q 041206 84 NSLATLMKLNGHKK---AVTNVGLPSG-SNKLYSGSRDGRVSVWDRDSGRCVNVI-----TNGAEIGCLIS-EGSWVFL- 152 (371)
Q Consensus 84 ~~~~~~~~l~~h~~---~V~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~- 152 (371)
...+.+..+.+|.. .|++++|+|+ +++|++++.||.|++||+.+++.+..+ .+...+.++.+ ++.++++
T Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~ 270 (615)
T 1pgu_A 191 PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATV 270 (615)
T ss_dssp TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEE
T ss_pred CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEE
Confidence 56788999999999 9999999999 999999999999999999999999998 55677887777 6777766
Q ss_pred ecCCcEEEEEeCCC---------------CeeEEEEeC-CEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEE
Q 041206 153 GLPNAVKSWRVNAA---------------SVNALVVNN-DLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLS 215 (371)
Q Consensus 153 ~~~~~i~~~~~~~~---------------~v~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~ 215 (371)
+.++.+++||+.++ .+.++.+.. +++++++.+|.|++||+.++ +.+..+..|. .|.+++
T Consensus 271 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~----~~~~~~~~~~~~v~~~~ 346 (615)
T 1pgu_A 271 GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHD----EVLKTISGHNKGITALT 346 (615)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEE----EEEEEECCCSSCEEEEE
T ss_pred cCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCC----cEEEEEeCCCCCEEEEE
Confidence 46899999999865 345566643 39999999999999999987 7777777776 777777
Q ss_pred ecCCceeEec-----------------------------ccceeeeeCCCeEEEEECC----------------------
Q 041206 216 SSNDTRWNSK-----------------------------EEAAVFEFCGHTTRTWNLD---------------------- 244 (371)
Q Consensus 216 ~~~~~~l~~~-----------------------------~~~~~~~~~dg~i~iwd~~---------------------- 244 (371)
| |+ ++++ +..+++++.|+.+++||+.
T Consensus 347 ~-~~--l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 423 (615)
T 1pgu_A 347 V-NP--LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVL 423 (615)
T ss_dssp T-TT--TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEE
T ss_pred e-cC--cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEE
Confidence 6 54 2222 1222333777777777664
Q ss_pred ------------CceEEEEeecCCCcEEEEEEcCCeEEEEeC-CCcEEEEEccCCCC-----cceecceEEEEecCCCCE
Q 041206 245 ------------NLECVQTLKGHSDTVTSLLFWDEYLFSSSL-DETIKIWLYTHTKN-----NAELSSLFGMLDAEAKPV 306 (371)
Q Consensus 245 ------------~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~ 306 (371)
+++.+..+. |...+.+++|+++++++++. |+.|++||+..... ..+...+..+.+.+++++
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 502 (615)
T 1pgu_A 424 TNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY 502 (615)
T ss_dssp ETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSE
T ss_pred eCCCceEEEeccCCceeeecc-cCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCE
Confidence 444555555 78899999999999999999 99999999875322 233345666677777779
Q ss_pred EEEecCCCeEEEEEcCCcceeeeec--CCceEEEEEeCC----------CC-eEEeeCCCCcEEEEEcccc
Q 041206 307 LFSSGKDSAIRLYELPSFKLRARIF--SRREVEVDQIGP----------AG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 307 l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~----------~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
|++++.|+.|++||+.+++.+..+. |...|++++|+| ++ +|++++.||.|++|++.++
T Consensus 503 l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 503 IAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp EEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred EEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 9999999999999999999988876 788999999999 89 9999999999999999876
No 28
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-37 Score=281.70 Aligned_cols=314 Identities=16% Similarity=0.123 Sum_probs=250.3
Q ss_pred cccCCCCc-eeeccCcc-------c----ccce------eEEEEEe----------eccceeeeeeeecceeeccceeeC
Q 041206 13 HKHSEGGE-TMMSDDDD-------L----MKGR------AEEREEM----------FGFGLAAMAIRVCNNWISDSCVYG 64 (371)
Q Consensus 13 ~~~sp~g~-~l~~~~~d-------~----~~~~------~~~~~~~----------h~~~v~~~~~~~~~~~~~~~~~~~ 64 (371)
..|+|+|+ +||+++.| + ..++ ....+.. |...|.+++++|...++. .+
T Consensus 51 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~----~~ 126 (425)
T 1r5m_A 51 STWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIV----TG 126 (425)
T ss_dssp EEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEE----EE
T ss_pred EEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEE----EE
Confidence 45899999 99998876 3 4455 3444444 688999999999765443 35
Q ss_pred CccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEe
Q 041206 65 DKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLI 144 (371)
Q Consensus 65 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 144 (371)
+.++.+++|+ ..++.+..+.+|...|++++|+|++++|++++.||.|++||+.+++.+..+..+.......
T Consensus 127 ~~dg~i~i~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 197 (425)
T 1r5m_A 127 VENGELRLWN---------KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI 197 (425)
T ss_dssp ETTSCEEEEE---------TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred eCCCeEEEEe---------CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence 6678899998 4567888999999999999999999999999999999999999999888776543210000
Q ss_pred ecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC-EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-
Q 041206 145 SEGSWVFLGLPNAVKSWRVNAASVNALVVNND-LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR- 221 (371)
Q Consensus 145 ~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~- 221 (371)
. ...+......+.+++|+++ .+++++.+|.|++||+.+. +....+..|. .|.+++|+|++.
T Consensus 198 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~ 261 (425)
T 1r5m_A 198 N------------AENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK----TPTGKLIGHHGPISVLEFNDTNKL 261 (425)
T ss_dssp --------------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCS----SCSEEECCCSSCEEEEEEETTTTE
T ss_pred e------------eccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCC----ceeeeeccCCCceEEEEECCCCCE
Confidence 0 0000111123788889888 9999999999999999988 7778888888 999999999985
Q ss_pred eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEcC-CeEEEEeCCCcEEEEEccCCCCcce----ecceE
Q 041206 222 WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWD-EYLFSSSLDETIKIWLYTHTKNNAE----LSSLF 296 (371)
Q Consensus 222 l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~ 296 (371)
++++ +.|+.|++||+++++.+..+..|...|.+++|++ .++++++.|+.|++||++..+.... ...+.
T Consensus 262 l~~~-------~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~ 334 (425)
T 1r5m_A 262 LLSA-------SDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIF 334 (425)
T ss_dssp EEEE-------ETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEE
T ss_pred EEEE-------cCCCEEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEE
Confidence 8888 9999999999999999999999999999999993 3999999999999999877653221 23455
Q ss_pred EEEecCCCCEEEEecCCCeEEEEEcCCcc--------------------eeeeecC-C-c-eEEEEEeCCCC-eEEeeCC
Q 041206 297 GMLDAEAKPVLFSSGKDSAIRLYELPSFK--------------------LRARIFS-R-R-EVEVDQIGPAG-LFFPGDA 352 (371)
Q Consensus 297 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------------------~~~~~~~-~-~-~v~~~~~s~~~-~l~~~~~ 352 (371)
.+.+.+++.+|++++.||.|++||+.+++ ++..+.. . . .|++++|+|++ +|++++.
T Consensus 335 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 414 (425)
T 1r5m_A 335 AGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYS 414 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEES
T ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEec
Confidence 56666677799999999999999999887 6766664 3 3 99999999999 9999999
Q ss_pred CCcEEEEEcc
Q 041206 353 SGSVGVWKWL 362 (371)
Q Consensus 353 dg~i~iw~~~ 362 (371)
||.|++|++.
T Consensus 415 dg~i~iw~~~ 424 (425)
T 1r5m_A 415 LQEGSVVAIP 424 (425)
T ss_dssp SSCCEEEECC
T ss_pred CceEEEEeec
Confidence 9999999985
No 29
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.1e-36 Score=275.77 Aligned_cols=302 Identities=20% Similarity=0.274 Sum_probs=246.4
Q ss_pred eeEEEEEeeccce-eeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEE
Q 041206 33 RAEEREEMFGFGL-AAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKL 111 (371)
Q Consensus 33 ~~~~~~~~h~~~v-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 111 (371)
.....+.+|...+ .++.+.+ + ....++.++.|++|+ ..+++.+..+.+|.+.|++++|+|++ +|
T Consensus 112 ~~~~~l~~h~~~v~~~~~~~~-~-----~l~sgs~dg~i~vwd--------~~~~~~~~~~~~h~~~V~~l~~~~~~-~l 176 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQFED-N-----YVITGADDKMIRVYD--------SINKKFLLQLSGHDGGVWALKYAHGG-IL 176 (464)
T ss_dssp CEEEEEECCSSSCEEEEEEET-T-----EEEEEETTSCEEEEE--------TTTTEEEEEECCCSSCEEEEEECSTT-EE
T ss_pred cceEEEcCCCCCcEEEEEECC-C-----EEEEEcCCCcEEEEE--------CCCCcEEEEEeCCCcCEEEEEEcCCC-EE
Confidence 3456789999886 5555543 2 233477899999999 45678999999999999999999988 99
Q ss_pred EEEeCCCcEEEEECCCCceEEEEeC-CCeeEEEee----cCCEEEE-ecCCcEEEEEeCCC-------------------
Q 041206 112 YSGSRDGRVSVWDRDSGRCVNVITN-GAEIGCLIS----EGSWVFL-GLPNAVKSWRVNAA------------------- 166 (371)
Q Consensus 112 ~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~-~~~~~i~~~~~~~~------------------- 166 (371)
++|+.||+|++||+++++++..+.. ...+.++.+ ++.++++ +.++.+++||+.+.
T Consensus 177 ~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 256 (464)
T 3v7d_B 177 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP 256 (464)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCG
T ss_pred EEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeecc
Confidence 9999999999999999999988874 566777654 3455555 56899999998654
Q ss_pred ---------------CeeEEEEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccce
Q 041206 167 ---------------SVNALVVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAA 229 (371)
Q Consensus 167 ---------------~v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~ 229 (371)
.+.++..+++++++++.||.|++||+.++ +.+..+.+|. .|.+++|+|++. +++|
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~sg---- 328 (464)
T 3v7d_B 257 EENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM----KCLYILSGHTDRIYSTIYDHERKRCISA---- 328 (464)
T ss_dssp GGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEEETTTTEEEEE----
T ss_pred CCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCC----cEEEEecCCCCCEEEEEEcCCCCEEEEE----
Confidence 45667667779999999999999999988 8889999999 999999999985 8999
Q ss_pred eeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCCccee---cceEEEEecCCCCE
Q 041206 230 VFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKNNAEL---SSLFGMLDAEAKPV 306 (371)
Q Consensus 230 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~ 306 (371)
+.|+.|++||+++++++..+.+|...|.+++|++++|++++.||.|++||+......... .........+++.+
T Consensus 329 ---~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (464)
T 3v7d_B 329 ---SMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNI 405 (464)
T ss_dssp ---ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSE
T ss_pred ---eCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCE
Confidence 999999999999999999999999999999999999999999999999998876532111 12222334445558
Q ss_pred EEEecCCCeEEEEEcCCcceeeeec--CCceEEEEEeCCCCeEEeeCCCCcEEEEEc
Q 041206 307 LFSSGKDSAIRLYELPSFKLRARIF--SRREVEVDQIGPAGLFFPGDASGSVGVWKW 361 (371)
Q Consensus 307 l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~~l~~~~~dg~i~iw~~ 361 (371)
+++++ |+.|++||+++++++.... +...|.+++|+++.++++++.||.+.+|-+
T Consensus 406 l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 406 LVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred EEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEEEEeCCeEEEEEe
Confidence 88888 8999999999999887633 688999999973337777778887666543
No 30
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=6.5e-37 Score=293.79 Aligned_cols=286 Identities=20% Similarity=0.251 Sum_probs=229.7
Q ss_pred ceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEE
Q 041206 32 GRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKL 111 (371)
Q Consensus 32 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 111 (371)
.++...+++|.+.|.++++++.+. ....+++.|+.|++|+..... .......+.+.+|...|++++|+|++++|
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~~~~---~~l~s~s~D~~i~~W~~~~~~---~~~~~~~~~~~~h~~~v~~v~~s~~g~~l 445 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPIDNA---DIIVSASRDKSIILWKLTKDD---KAYGVAQRRLTGHSHFVEDVVLSSDGQFA 445 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCTTCC---SEEEEEETTSEEEEEECCCST---TCSCEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred cchhhhcccCCceeEEEEecCCCC---CEEEEEeCCCcEEEEEccCCC---cccccccceecCCCCcEEEEEECCCCCEE
Confidence 445567899999999999987542 122347889999999954321 11234567899999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEE
Q 041206 112 YSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISV 189 (371)
Q Consensus 112 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~i 189 (371)
+||+.||+|++||+.+++....+.. |...|.+++|+|+ +|++++.|+.|++
T Consensus 446 ~sgs~Dg~v~vwd~~~~~~~~~~~~---------------------------h~~~v~~~~~s~~~~~l~s~s~D~~i~i 498 (694)
T 3dm0_A 446 LSGSWDGELRLWDLAAGVSTRRFVG---------------------------HTKDVLSVAFSLDNRQIVSASRDRTIKL 498 (694)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEEC---------------------------CSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred EEEeCCCcEEEEECCCCcceeEEeC---------------------------CCCCEEEEEEeCCCCEEEEEeCCCEEEE
Confidence 9999999999999999988777654 5567999999988 9999999999999
Q ss_pred EeccCCCCcceeeEE---EecCc-ceEEEEecCCc---eeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEE
Q 041206 190 WKGTFVANPFKQVAS---IRAPL-WFCSLSSSNDT---RWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSL 262 (371)
Q Consensus 190 wd~~~~~~~~~~~~~---~~~~~-~v~~~~~~~~~---~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 262 (371)
||.... ..... ..+|. .|.+++|+|++ .++++ +.|+.|++||++++++...+.+|.+.|.++
T Consensus 499 wd~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-------s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v 567 (694)
T 3dm0_A 499 WNTLGE----CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA-------SWDKTVKVWNLSNCKLRSTLAGHTGYVSTV 567 (694)
T ss_dssp ECTTSC----EEEEECSSTTSCSSCEEEEEECSCSSSCEEEEE-------ETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred EECCCC----cceeeccCCCCCCCcEEEEEEeCCCCcceEEEE-------eCCCeEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 998654 22222 23566 89999999986 38899 999999999999999999999999999999
Q ss_pred EEc--CCeEEEEeCCCcEEEEEccCCCCcc---eecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecCC----
Q 041206 263 LFW--DEYLFSSSLDETIKIWLYTHTKNNA---ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSR---- 333 (371)
Q Consensus 263 ~~~--~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---- 333 (371)
+|+ +++|++++.|+.|++||++..+... ....+..+.+.+++.+++++ .++.|++||+++++.+..+...
T Consensus 568 ~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~ 646 (694)
T 3dm0_A 568 AVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAA-TEHGIKIWDLESKSIVEDLKVDLKAE 646 (694)
T ss_dssp EECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEE-ETTEEEEEETTTTEEEEEECCCCC--
T ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEE-cCCCEEEEECCCCCChhhhccccccc
Confidence 998 6899999999999999987665311 11235555666666566555 5667999999998877665420
Q ss_pred ----------------ceEEEEEeCCCC-eEEeeCCCCcEEEEEcc
Q 041206 334 ----------------REVEVDQIGPAG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 334 ----------------~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~ 362 (371)
..+++++|+|+| +|++|+.||.|++|++.
T Consensus 647 ~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 647 AEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp --------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 137899999999 99999999999999985
No 31
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-37 Score=279.77 Aligned_cols=314 Identities=12% Similarity=0.148 Sum_probs=242.3
Q ss_pred cccCCCCceeeccCcccccceeEEEE-Eeeccceeeeeeee-cceeeccceeeCCccceEEEEEeccCCCCccCCceeeE
Q 041206 13 HKHSEGGETMMSDDDDLMKGRAEERE-EMFGFGLAAMAIRV-CNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLM 90 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d~~~~~~~~~~-~~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 90 (371)
..|+|+++.++++..-...++++..+ .+|.+.|.+++++| ...++. .++.++.|++|+...... ....+...
T Consensus 33 ~~f~~~~~~~~~~~~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~----s~s~dg~v~vwd~~~~~~--~~~~~~~~ 106 (437)
T 3gre_A 33 KEFGPIQEIVRSPNMGNLRGKLIATLMENEPNSITSSAVSPGETPYLI----TGSDQGVIKIWNLKEIIV--GEVYSSSL 106 (437)
T ss_dssp GGGCCCCCCCCCCCGGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEE----EEETTSEEEEEEHHHHHT--TCCCSCSE
T ss_pred hhcCCccccccccccccccceEEeeeccCCCCceEEEEECCCCCCEEE----EecCCceEEEeECccccc--Ccccceee
Confidence 45899999999887555788999999 99999999999999 654332 366889999999432100 00122233
Q ss_pred eeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECC---CCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCC
Q 041206 91 KLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRD---SGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAAS 167 (371)
Q Consensus 91 ~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 167 (371)
.+ +|...|++++|+|++++|++|+.||+|++||++ +++.......+ .+..+.+...- +...
T Consensus 107 ~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~--------------~~~~ 170 (437)
T 3gre_A 107 TY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE-CIRKINLKNFG--------------KNEY 170 (437)
T ss_dssp EE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE-EEEEEEGGGGS--------------SCCC
T ss_pred ec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccc-eeEEEEccCcc--------------cccC
Confidence 33 599999999999999999999999999999995 66666554432 22222211000 2345
Q ss_pred eeEEEE--eCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEec--Cc-ceEEEEecCCce-eEecccceeeeeCCCeEE
Q 041206 168 VNALVV--NND--LLFAGSEGGVISVWKGTFVANPFKQVASIRA--PL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTR 239 (371)
Q Consensus 168 v~~~~~--~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~ 239 (371)
+.++.+ +++ ++++++.|+.|++||++++ +.+..+.. |. .|++++|+|++. +++| +.||.|+
T Consensus 171 ~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-------~~dg~i~ 239 (437)
T 3gre_A 171 AVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL----ERLQIIENSPRHGAVSSICIDEECCVLILG-------TTRGIID 239 (437)
T ss_dssp EEEEEEEECSSCEEEEEEETTSEEEEEETTTC----CEEEEEECCGGGCCEEEEEECTTSCEEEEE-------ETTSCEE
T ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----eeeEEEccCCCCCceEEEEECCCCCEEEEE-------cCCCeEE
Confidence 667764 344 9999999999999999998 78888888 67 999999999986 8899 9999999
Q ss_pred EEECCCceEEEEee-cCCCcEEEEEEcC------CeEEEEeCCCcEEEEEccCCCCcc----------------------
Q 041206 240 TWNLDNLECVQTLK-GHSDTVTSLLFWD------EYLFSSSLDETIKIWLYTHTKNNA---------------------- 290 (371)
Q Consensus 240 iwd~~~~~~~~~~~-~~~~~v~~~~~~~------~~l~s~~~dg~i~iwd~~~~~~~~---------------------- 290 (371)
+||+++++++..+. .|..+|.+++|++ .+|++++.|+.|++||++..+...
T Consensus 240 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 319 (437)
T 3gre_A 240 IWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLE 319 (437)
T ss_dssp EEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGG
T ss_pred EEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccc
Confidence 99999999999886 7888999997763 389999999999999987544110
Q ss_pred --------eecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-------------------------------
Q 041206 291 --------ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF------------------------------- 331 (371)
Q Consensus 291 --------~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------------------------------- 331 (371)
+...+..+.+.+ +.+|++++.|+.|++||+.+++....+.
T Consensus 320 ~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (437)
T 3gre_A 320 ELNFCGIRSLNALSTISVSN-DKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTH 398 (437)
T ss_dssp GCCCCCCCSGGGGCCEEEET-TEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-----
T ss_pred cceecccccCCceEEEEECC-ceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEeccccccc
Confidence 112233344443 4599999999999999999987665554
Q ss_pred -------CCceEEEEEeCCC--C-eEEeeCCCCcEEEEE
Q 041206 332 -------SRREVEVDQIGPA--G-LFFPGDASGSVGVWK 360 (371)
Q Consensus 332 -------~~~~v~~~~~s~~--~-~l~~~~~dg~i~iw~ 360 (371)
|...|++++|+++ + +|++|+.||.|+||+
T Consensus 399 ~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 399 SVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 5778999999998 6 999999999999995
No 32
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-36 Score=296.60 Aligned_cols=334 Identities=9% Similarity=-0.005 Sum_probs=246.0
Q ss_pred cccCCCCceeeccCccc-------ccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCC
Q 041206 13 HKHSEGGETMMSDDDDL-------MKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNS 85 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d~-------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (371)
-.|+|+|++||++..|. ...+.... ..|...|.+++|+|...++. ++.++.|++|+ ...
T Consensus 23 lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~-~~~~~~V~~l~fspg~~L~S-----~s~D~~v~lWd--------~~~ 88 (902)
T 2oaj_A 23 AAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK-LEDRSAIKEMRFVKGIYLVV-----INAKDTVYVLS--------LYS 88 (902)
T ss_dssp EEEETTTTEEEEEETTSEEEEECSTTCEEEEE-CSSCCCEEEEEEETTTEEEE-----EETTCEEEEEE--------TTT
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE-cCCCCCEEEEEEcCCCEEEE-----EECcCeEEEEE--------CCC
Confidence 36999999999998772 23344333 35788999999999442333 56789999999 344
Q ss_pred ceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEE-E----------e-CCCeeEEEeecC---CEE
Q 041206 86 LATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNV-I----------T-NGAEIGCLISEG---SWV 150 (371)
Q Consensus 86 ~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~----------~-~~~~~~~~~~~~---~~~ 150 (371)
++.+..+. |.+.|++++|+|++++|++|+.||+|++||++++++... + . +..++.++.+.. ..+
T Consensus 89 ~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l 167 (902)
T 2oaj_A 89 QKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV 167 (902)
T ss_dssp CSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred CcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEE
Confidence 57777886 778999999999999999999999999999998876411 1 1 235677777643 355
Q ss_pred EE-ecCCcEEEEEeCC-----------------------------CCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCc
Q 041206 151 FL-GLPNAVKSWRVNA-----------------------------ASVNALVVNND--LLFAGSEGGVISVWKGTFVANP 198 (371)
Q Consensus 151 ~~-~~~~~i~~~~~~~-----------------------------~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~ 198 (371)
++ +.++.+ +||+.+ ..|.+++|+|+ +|++++.||.|++||++++
T Consensus 168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g--- 243 (902)
T 2oaj_A 168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG--- 243 (902)
T ss_dssp EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC---
T ss_pred EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---
Confidence 55 567888 999754 45999999998 9999999999999999887
Q ss_pred ceeeEE--E---e-------------cCc-ceEEEEec----CCc-e-eEeccc--------------------------
Q 041206 199 FKQVAS--I---R-------------APL-WFCSLSSS----NDT-R-WNSKEE-------------------------- 227 (371)
Q Consensus 199 ~~~~~~--~---~-------------~~~-~v~~~~~~----~~~-~-l~~~~~-------------------------- 227 (371)
+++.. + . .+. .|.+++|+ |++ . +++|+.
T Consensus 244 -~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~ 322 (902)
T 2oaj_A 244 -HMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYE 322 (902)
T ss_dssp -CEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHH
T ss_pred -cEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchh
Confidence 44332 2 1 134 78899984 443 3 444310
Q ss_pred -------------------------------------------ceeeeeCCCeEEEEECCCceEEEE-------eecCCC
Q 041206 228 -------------------------------------------AAVFEFCGHTTRTWNLDNLECVQT-------LKGHSD 257 (371)
Q Consensus 228 -------------------------------------------~~~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~ 257 (371)
.+++++.|+.|++||+.++..... +..|..
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~ 402 (902)
T 2oaj_A 323 GMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRP 402 (902)
T ss_dssp HHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTT
T ss_pred hhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCC
Confidence 124445678899999877654321 223444
Q ss_pred cEEEEE----------------------------------Ec--CCeEEEEeCCCcEEEEEccCCCCc------------
Q 041206 258 TVTSLL----------------------------------FW--DEYLFSSSLDETIKIWLYTHTKNN------------ 289 (371)
Q Consensus 258 ~v~~~~----------------------------------~~--~~~l~s~~~dg~i~iwd~~~~~~~------------ 289 (371)
.|++++ |+ +++|++++.|++|++||+......
T Consensus 403 ~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~ 482 (902)
T 2oaj_A 403 LATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRT 482 (902)
T ss_dssp BEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHH
T ss_pred CeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhh
Confidence 455444 44 569999999999999998765421
Q ss_pred ---ceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcc-----------------------------------------
Q 041206 290 ---AELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFK----------------------------------------- 325 (371)
Q Consensus 290 ---~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----------------------------------------- 325 (371)
.+...+..+.+.+++++|++|+.||+|+|||+.+++
T Consensus 483 ~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (902)
T 2oaj_A 483 LNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVR 562 (902)
T ss_dssp TTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCS
T ss_pred cCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCC
Confidence 222356777777777799999999999999997652
Q ss_pred ----eeeeec-CCceEEEEEeCCCCeEEeeCCCCcEEEEEccccce
Q 041206 326 ----LRARIF-SRREVEVDQIGPAGLFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 326 ----~~~~~~-~~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~~~~~ 366 (371)
++..+. |.+.|++++|+|||+||+|+.|++|++||+.++..
T Consensus 563 ~g~~~~~~l~~h~~~V~svafSpdG~lAsgs~D~tv~lwd~~~~~~ 608 (902)
T 2oaj_A 563 QGFMPSTAVHANKGKTSAINNSNIGFVGIAYAAGSLMLIDRRGPAI 608 (902)
T ss_dssp EEEEEEEEECCCSCSEEEEEECBTSEEEEEETTSEEEEEETTTTEE
T ss_pred CccceeEEEEcCCCcEEEEEecCCcEEEEEeCCCcEEEEECCCCeE
Confidence 233444 68899999999999999999999999999987654
No 33
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.1e-37 Score=275.28 Aligned_cols=267 Identities=16% Similarity=0.153 Sum_probs=207.8
Q ss_pred cccCCCCceeeccCcccc-----------------cceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEe
Q 041206 13 HKHSEGGETMMSDDDDLM-----------------KGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVH 75 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d~~-----------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 75 (371)
-+|||||++||+++.|.. ...+.....+|..+|.+++|+|.+.++. ++.++.|++|+.
T Consensus 48 v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~-----~s~dg~v~lWd~ 122 (357)
T 4g56_B 48 VRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILV-----ASDSGAVELWEI 122 (357)
T ss_dssp EEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEE-----EETTSCEEEC--
T ss_pred EEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEE-----EECCCEEEEeec
Confidence 359999999999986411 1233455678999999999999877654 456788999983
Q ss_pred ccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecC
Q 041206 76 SVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLP 155 (371)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (371)
.... ..........+|.+.|++++|+|++++|++|+.|++|++||+.+++++..+..
T Consensus 123 ~~~~----~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~------------------- 179 (357)
T 4g56_B 123 LEKE----SLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA------------------- 179 (357)
T ss_dssp ----------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECC-------------------
T ss_pred cccc----eeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-------------------
Confidence 2110 00111234568999999999999999999999999999999999998887764
Q ss_pred CcEEEEEeCCCCeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEe--cCc-ceEEEEecCCc-e-eEeccc
Q 041206 156 NAVKSWRVNAASVNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIR--APL-WFCSLSSSNDT-R-WNSKEE 227 (371)
Q Consensus 156 ~~i~~~~~~~~~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~~~-~v~~~~~~~~~-~-l~~~~~ 227 (371)
|...|.+++|+++ .+++++.||.|++||++++ ++...+. .+. .+.+++|+|++ . +++|
T Consensus 180 --------h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~----~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g-- 245 (357)
T 4g56_B 180 --------HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP----KPATRIDFCASDTIPTSVTWHPEKDDTFACG-- 245 (357)
T ss_dssp --------CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSS----SCBCBCCCTTCCSCEEEEEECTTSTTEEEEE--
T ss_pred --------CCCCEEEEEEccCCCceeeeeccCCceEEEECCCC----ceeeeeeeccccccccchhhhhcccceEEEe--
Confidence 4557999999876 7899999999999999987 4444333 445 89999999975 3 7888
Q ss_pred ceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc---CCeEEEEeCCCcEEEEEccCCCCc---ceecceEEEEec
Q 041206 228 AAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW---DEYLFSSSLDETIKIWLYTHTKNN---AELSSLFGMLDA 301 (371)
Q Consensus 228 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~ 301 (371)
+.|+.|++||++++++++.+.+|...|++++|+ +++|++++.|++|+|||++..+.. .+...+..+.+.
T Consensus 246 -----~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafs 320 (357)
T 4g56_B 246 -----DETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWS 320 (357)
T ss_dssp -----ESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEEC
T ss_pred -----ecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEe
Confidence 999999999999999999999999999999998 258999999999999998766531 223345555555
Q ss_pred -CCCCEEEEecCCCeEEEEEcCCcce
Q 041206 302 -EAKPVLFSSGKDSAIRLYELPSFKL 326 (371)
Q Consensus 302 -~~~~~l~~~~~d~~i~iwd~~~~~~ 326 (371)
.++.+|++++.|++|++|++.+...
T Consensus 321 P~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 321 PLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp SSSTTEEEEEETTSCEEEEECC----
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 4677999999999999999976443
No 34
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-36 Score=264.27 Aligned_cols=285 Identities=14% Similarity=0.162 Sum_probs=239.7
Q ss_pred eEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEE
Q 041206 34 AEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYS 113 (371)
Q Consensus 34 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s 113 (371)
....+.+|...|.+++++|...++. .++.++.+++|+ ...++.+..+.+|...|++++|+|++++|++
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~----~~~~dg~i~vwd--------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 91 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLF----SCSKDSSASVWY--------SLNGERLGTLDGHTGTIWSIDVDCFTKYCVT 91 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEE----EEESSSCEEEEE--------TTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEE----EEeCCCEEEEEe--------CCCchhhhhhhhcCCcEEEEEEcCCCCEEEE
Confidence 3455899999999999999766443 356778999999 4567889999999999999999999999999
Q ss_pred EeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCC-----Ce
Q 041206 114 GSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEG-----GV 186 (371)
Q Consensus 114 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~d-----g~ 186 (371)
++.||.|++||+.+++.+..+.... .+.+++|+|+ ++++++.+ +.
T Consensus 92 ~~~dg~i~iwd~~~~~~~~~~~~~~----------------------------~v~~~~~~~~~~~l~~~~~~~~~~~g~ 143 (369)
T 3zwl_B 92 GSADYSIKLWDVSNGQCVATWKSPV----------------------------PVKRVEFSPCGNYFLAILDNVMKNPGS 143 (369)
T ss_dssp EETTTEEEEEETTTCCEEEEEECSS----------------------------CEEEEEECTTSSEEEEEECCBTTBCCE
T ss_pred EeCCCeEEEEECCCCcEEEEeecCC----------------------------CeEEEEEccCCCEEEEecCCccCCCCE
Confidence 9999999999999999888877433 4889999988 88899888 99
Q ss_pred EEEEeccCCCCcc-------eeeEEEecCc---ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCC-ceEEEEeec
Q 041206 187 ISVWKGTFVANPF-------KQVASIRAPL---WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDN-LECVQTLKG 254 (371)
Q Consensus 187 v~iwd~~~~~~~~-------~~~~~~~~~~---~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~-~~~~~~~~~ 254 (371)
|++||+....... .....+..+. .+.+++|+|+++ ++++ +.||.|++||+++ .+.+..+..
T Consensus 144 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~dg~i~i~d~~~~~~~~~~~~~ 216 (369)
T 3zwl_B 144 INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAG-------HKDGKISKYDVSNNYEYVDSIDL 216 (369)
T ss_dssp EEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEE-------ETTSEEEEEETTTTTEEEEEEEC
T ss_pred EEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEE-------cCCCEEEEEECCCCcEeEEEEec
Confidence 9999998764211 1233344443 799999999986 8888 9999999999998 788999999
Q ss_pred CCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCccee---cceEEEEecCCCCEEEEecCCC--------------e
Q 041206 255 HSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAEL---SSLFGMLDAEAKPVLFSSGKDS--------------A 315 (371)
Q Consensus 255 ~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~--------------~ 315 (371)
|...|.+++|+ +++|++++.|+.|++||++..+..... ..+..+.+.+++.++++++.++ .
T Consensus 217 ~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 296 (369)
T 3zwl_B 217 HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFE 296 (369)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CE
T ss_pred CCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcce
Confidence 99999999998 679999999999999998876542222 2445556666677999998888 8
Q ss_pred EEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccc
Q 041206 316 IRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 316 i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~ 365 (371)
+++||..+++.+..+. +...|++++|+|++ +|++++.||.|++|++..+.
T Consensus 297 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 297 ARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred eEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 9999999999888877 68899999999999 99999999999999998754
No 35
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6e-36 Score=259.53 Aligned_cols=248 Identities=19% Similarity=0.312 Sum_probs=211.2
Q ss_pred cCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEE
Q 041206 83 TNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWR 162 (371)
Q Consensus 83 ~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 162 (371)
.+...+..++.+|.+.|++++|+|++++|++++.||.|++|++.+++....+..
T Consensus 10 ~~~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-------------------------- 63 (312)
T 4ery_A 10 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG-------------------------- 63 (312)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC--------------------------
T ss_pred CCCceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhcc--------------------------
Confidence 345677889999999999999999999999999999999999999888777654
Q ss_pred eCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeE
Q 041206 163 VNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTT 238 (371)
Q Consensus 163 ~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i 238 (371)
|...|.+++|+|+ +|++++.|+.|++||+.++ +.+..+..|. .|.+++|+|++. ++++ +.|+.|
T Consensus 64 -h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~-------~~d~~i 131 (312)
T 4ery_A 64 -HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQSNLIVSG-------SFDESV 131 (312)
T ss_dssp -CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEECSSSSEEEEE-------ETTSCE
T ss_pred -CCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC----cEEEEEcCCCCCEEEEEEcCCCCEEEEE-------eCCCcE
Confidence 4557999999988 9999999999999999988 7888999999 999999999986 8899 999999
Q ss_pred EEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcc-----eecceEEEEecCCCCEEEEec
Q 041206 239 RTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNA-----ELSSLFGMLDAEAKPVLFSSG 311 (371)
Q Consensus 239 ~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~ 311 (371)
++||+++++.+..+..|..+|.+++|+ +++|++++.|+.|++||++..+... ....+..+.+.+++++|++++
T Consensus 132 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 211 (312)
T 4ery_A 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 211 (312)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE
T ss_pred EEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc
Confidence 999999999999999999999999998 6799999999999999988765321 122455566677777999999
Q ss_pred CCCeEEEEEcCCcceeeeecC-Cce---EEEEEeCCCC-eEEeeCCCCcEEEEEccccceec
Q 041206 312 KDSAIRLYELPSFKLRARIFS-RRE---VEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 312 ~d~~i~iwd~~~~~~~~~~~~-~~~---v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
.|+.|++||+++++.+..+.. ... +......+++ +|++|+.||.|++||+.+++..+
T Consensus 212 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~ 273 (312)
T 4ery_A 212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 273 (312)
T ss_dssp TTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEE
T ss_pred CCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhh
Confidence 999999999999988877763 222 2223334566 99999999999999998876543
No 36
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.6e-37 Score=311.75 Aligned_cols=340 Identities=17% Similarity=0.228 Sum_probs=278.4
Q ss_pred cccCCCCceeeccCcc-------cccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCC
Q 041206 13 HKHSEGGETMMSDDDD-------LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNS 85 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (371)
-.|+|+|+++++++.| ..+++.+..+.+|...|.++++++..... ....++.++.+++|+ ...
T Consensus 663 ~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~sg~~d~~v~vwd--------~~~ 732 (1249)
T 3sfz_A 663 CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHL--LLATGSNDFFLKLWD--------LNQ 732 (1249)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCC--EEEEEETTSCEEEEE--------TTS
T ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCce--EEEEEeCCCeEEEEE--------CCC
Confidence 4599999999999876 55789999999999999999998843210 123367888999999 456
Q ss_pred ceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC--------------eeEEE--eecCCE
Q 041206 86 LATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGA--------------EIGCL--ISEGSW 149 (371)
Q Consensus 86 ~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--------------~~~~~--~~~~~~ 149 (371)
++.+..+.+|.+.|++++|+|++++|++++.||+|++||+.+++....+.... .+.++ .+++..
T Consensus 733 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1249)
T 3sfz_A 733 KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDK 812 (1249)
T ss_dssp SSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSE
T ss_pred cchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCE
Confidence 67889999999999999999999999999999999999999998877765422 23333 357888
Q ss_pred EEEecCCcEEEEEeCCC------------CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEE
Q 041206 150 VFLGLPNAVKSWRVNAA------------SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSL 214 (371)
Q Consensus 150 ~~~~~~~~i~~~~~~~~------------~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~ 214 (371)
++++.++.+.+|+..++ .|.+++|+|+ .+++++.+|.|++||+.++ .....+.+|. .|.++
T Consensus 813 l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~----~~~~~~~~h~~~v~~v 888 (1249)
T 3sfz_A 813 IIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR----LKVADCRGHLSWVHGV 888 (1249)
T ss_dssp EEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT----EEEEEECCCSSCEEEE
T ss_pred EEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----ceeeecCCCccceEEE
Confidence 99888999999997554 7889999988 9999999999999999988 8888899999 99999
Q ss_pred EecCCce-eEecc-------------------------------------------------------------------
Q 041206 215 SSSNDTR-WNSKE------------------------------------------------------------------- 226 (371)
Q Consensus 215 ~~~~~~~-l~~~~------------------------------------------------------------------- 226 (371)
+|+|++. +++++
T Consensus 889 ~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 968 (1249)
T 3sfz_A 889 MFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCC 968 (1249)
T ss_dssp EECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEE
T ss_pred EECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEE
Confidence 9999885 66661
Q ss_pred -----cceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC---cceecceE
Q 041206 227 -----EAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN---NAELSSLF 296 (371)
Q Consensus 227 -----~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~ 296 (371)
..+++++.+|.|++||+.+++.+..+.+|...|.+++|+ +++|++++.|+.|++||+...+. ..+...+.
T Consensus 969 ~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~ 1048 (1249)
T 3sfz_A 969 LSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVK 1048 (1249)
T ss_dssp ECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEE
T ss_pred EcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEE
Confidence 123445566666666666777777788899999999998 67999999999999999876542 22223455
Q ss_pred EEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccccee
Q 041206 297 GMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 297 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~ 367 (371)
.+.+.+++ .+++++.|+.|++||+.+++....+. +...|.+++|+|++ .+++++.||.|++|++.+++..
T Consensus 1049 ~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~ 1120 (1249)
T 3sfz_A 1049 DFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL 1120 (1249)
T ss_dssp EEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCS
T ss_pred EEEEcCCC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCccee
Confidence 55566655 78899999999999999999888777 67899999999999 9999999999999999876543
No 37
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.3e-36 Score=261.92 Aligned_cols=246 Identities=20% Similarity=0.237 Sum_probs=206.8
Q ss_pred CceeeEeeeCccCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEe
Q 041206 85 SLATLMKLNGHKKAVTNVGLPSGS-NKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRV 163 (371)
Q Consensus 85 ~~~~~~~l~~h~~~V~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 163 (371)
...+..+|+||.+.|++++|+|++ ++|+||+.|++|++|++........ ..++.+..
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~----------------------~~~~~~~~ 63 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFG----------------------VPVRSFKG 63 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEE----------------------EEEEEEEC
T ss_pred EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccc----------------------ccceEEeC
Confidence 456778999999999999999954 8999999999999999864321110 01233445
Q ss_pred CCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEE
Q 041206 164 NAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTR 239 (371)
Q Consensus 164 ~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~ 239 (371)
|...|.+++|+|+ ++++++.|+.|++||+.++ +.+..+.+|. .|.+++|+|++. ++++ +.|+.|+
T Consensus 64 h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~-------s~D~~i~ 132 (319)
T 3frx_A 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATG----ETYQRFVGHKSDVMSVDIDKKASMIISG-------SRDKTIK 132 (319)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEECTTSCEEEEE-------ETTSCEE
T ss_pred CcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC----CeeEEEccCCCcEEEEEEcCCCCEEEEE-------eCCCeEE
Confidence 7778999999998 9999999999999999998 8889999999 999999999986 8999 9999999
Q ss_pred EEECCCceEEEEeecCCCcEEEEEEcC--------CeEEEEeCCCcEEEEEccCCCC----cceecceEEEEecCCCCEE
Q 041206 240 TWNLDNLECVQTLKGHSDTVTSLLFWD--------EYLFSSSLDETIKIWLYTHTKN----NAELSSLFGMLDAEAKPVL 307 (371)
Q Consensus 240 iwd~~~~~~~~~~~~~~~~v~~~~~~~--------~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~l 307 (371)
+||++ ++++..+.+|...|.++.+.+ .++++++.|+.|++||++..+. ..+...+..+.+.+++.+|
T Consensus 133 vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l 211 (319)
T 3frx_A 133 VWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI 211 (319)
T ss_dssp EEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEE
T ss_pred EEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEE
Confidence 99997 567788899999999999973 2799999999999999876543 2233456666677777799
Q ss_pred EEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccc
Q 041206 308 FSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 308 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~ 365 (371)
++++.|+.|++||+.+++.+..+.+..+|.+++|+|++ +|++++. +.+++|++....
T Consensus 212 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~ 269 (319)
T 3frx_A 212 ASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQY 269 (319)
T ss_dssp EEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEET-TEEEEEEETTEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCe
Confidence 99999999999999999999888888899999999999 7777765 569999987654
No 38
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.1e-37 Score=273.76 Aligned_cols=294 Identities=13% Similarity=0.087 Sum_probs=234.1
Q ss_pred eeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCC----C
Q 041206 33 RAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSG----S 108 (371)
Q Consensus 33 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~----~ 108 (371)
+....+.+|...|.+++++| +.++. ++.++.|++|+...... ....+.+..+.+|...|++++|+|+ +
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~-~~l~s-----~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g 78 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN-SFTVS-----CSGDGYLKVWDNKLLDN--ENPKDKSYSHFVHKSGLHHVDVLQAIERDA 78 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS-SEEEE-----EETTSEEEEEESBCCTT--CCGGGGEEEEECCTTCEEEEEEEEEEETTT
T ss_pred hhhhhhhhhhcCeEEEEecC-CeEEE-----EcCCCEEEEEECCCccc--ccCCCcceEEecCCCcEEEEEEecccccCC
Confidence 34566789999999999998 44433 67789999999422100 1113478899999999999999999 9
Q ss_pred ---CEEEEEeCCCcEEEEECCCCce-----EEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeC--CCCeeEEEEe----
Q 041206 109 ---NKLYSGSRDGRVSVWDRDSGRC-----VNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVN--AASVNALVVN---- 174 (371)
Q Consensus 109 ---~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~v~~~~~~---- 174 (371)
++|++++.||.|++||+.+++. ...+..+.. + ...|.+++|+
T Consensus 79 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~v~~~~~~~~~~ 134 (397)
T 1sq9_A 79 FELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDS------------------------DMKKHSFWALKWGASND 134 (397)
T ss_dssp EEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCT------------------------TGGGSCEEEEEEECCC-
T ss_pred ccccEEEEEcCCCCEEEEEccCCcccccccceeeccccc------------------------ccCCCcEEEEEEeeccC
Confidence 9999999999999999988775 555443210 0 3569999999
Q ss_pred CC--E-EEEEeCCCeEEEEeccC------CCCc-ceeeEEEe-------cCc-ceEEEEecCCceeEecccceeeeeCCC
Q 041206 175 ND--L-LFAGSEGGVISVWKGTF------VANP-FKQVASIR-------APL-WFCSLSSSNDTRWNSKEEAAVFEFCGH 236 (371)
Q Consensus 175 ~~--~-l~~~~~dg~v~iwd~~~------~~~~-~~~~~~~~-------~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg 236 (371)
|+ + |++++.||.|++||+.. .... +.+...+. .|. .+.+++|+|++.++++ +.|+
T Consensus 135 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~-------~~dg 207 (397)
T 1sq9_A 135 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATG-------FNNG 207 (397)
T ss_dssp ---CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEE-------CTTS
T ss_pred CCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEE-------eCCC
Confidence 77 7 99999999999999998 5211 11122553 366 9999999998877788 9999
Q ss_pred eEEEEECCCceEEEEeec---C---CCcEEEEEEc--CCeEEEEeCC---CcEEEEEccCCCCcc---------------
Q 041206 237 TTRTWNLDNLECVQTLKG---H---SDTVTSLLFW--DEYLFSSSLD---ETIKIWLYTHTKNNA--------------- 290 (371)
Q Consensus 237 ~i~iwd~~~~~~~~~~~~---~---~~~v~~~~~~--~~~l~s~~~d---g~i~iwd~~~~~~~~--------------- 290 (371)
.|++||+++++++..+.. | ...|.+++|+ +++|++++.| +.|++||++..+...
T Consensus 208 ~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 287 (397)
T 1sq9_A 208 TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGE 287 (397)
T ss_dssp EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CC
T ss_pred cEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccc
Confidence 999999999999999998 9 9999999998 6899999999 999999987765321
Q ss_pred --eecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-------C---------------CceEEEEEeCCCC-
Q 041206 291 --ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-------S---------------RREVEVDQIGPAG- 345 (371)
Q Consensus 291 --~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------~---------------~~~v~~~~~s~~~- 345 (371)
+...+..+.+.+++.+|++++.|+.|++||+++++.+..+. + ..+|++++|+|++
T Consensus 288 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~ 367 (397)
T 1sq9_A 288 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW 367 (397)
T ss_dssp BSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred cccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccc
Confidence 33456666777777799999999999999999999888876 3 7899999999995
Q ss_pred ----------eEEeeCCCCcEEEEEccccc
Q 041206 346 ----------LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 346 ----------~l~~~~~dg~i~iw~~~~~~ 365 (371)
+|++++.||.|++|++.+++
T Consensus 368 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 368 RSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp SBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cccccccccceEEEecCCCcEEEEEcCCCC
Confidence 89999999999999998753
No 39
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.6e-37 Score=273.59 Aligned_cols=276 Identities=12% Similarity=0.145 Sum_probs=218.9
Q ss_pred EEEeeccceeeeeeeec----ceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeC-----ccCCeEEEEEcCC
Q 041206 37 REEMFGFGLAAMAIRVC----NNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNG-----HKKAVTNVGLPSG 107 (371)
Q Consensus 37 ~~~~h~~~v~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~-----h~~~V~~~~~~~~ 107 (371)
...+|...|.+++++|. ...+. .+..++.+++|+. ...+.+..++. |...|++++|+|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~----~~~~~~~v~vw~~--------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 80 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVF----ATVGSNRVTLYEC--------HSQGEIRLLQSYVDADADENFYTCAWTYD 80 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEE----EEEETTEEEEEEE--------CGGGCEEEEEEEECSCTTCCEEEEEEEEC
T ss_pred eecCCCCceEEEEEecccCCCCceEE----EECCCCEEEEEEc--------CCCcEEEeeeeccccCCCCcEEEEEeccC
Confidence 34589999999999983 22221 2344558999993 23344555544 5678999999998
Q ss_pred ----CCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeC-C--EEEE
Q 041206 108 ----SNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNN-D--LLFA 180 (371)
Q Consensus 108 ----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~-~--~l~~ 180 (371)
+++|++|+.||.|++||+.+++.+..+.. |...|.+++|+| + ++++
T Consensus 81 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---------------------------~~~~i~~~~~~~~~~~~l~s 133 (366)
T 3k26_A 81 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYVG---------------------------HGNAINELKFHPRDPNLLLS 133 (366)
T ss_dssp TTTCCEEEEEEETTCEEEEECTTTCCEEEEEES---------------------------CCSCEEEEEECSSCTTEEEE
T ss_pred CCCCCCEEEEecCCCEEEEEEchhceEeeeecC---------------------------CCCcEEEEEECCCCCCEEEE
Confidence 67999999999999999999988877764 455799999998 4 9999
Q ss_pred EeCCCeEEEEeccCCCCcceeeEEE---ecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEee--
Q 041206 181 GSEGGVISVWKGTFVANPFKQVASI---RAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLK-- 253 (371)
Q Consensus 181 ~~~dg~v~iwd~~~~~~~~~~~~~~---~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~-- 253 (371)
++.||.|++||++++ +....+ ..|. .|.+++|+|++. ++++ +.|+.|++||+++++.+..+.
T Consensus 134 ~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-------~~dg~i~i~d~~~~~~~~~~~~~ 202 (366)
T 3k26_A 134 VSKDHALRLWNIQTD----TLVAIFGGVEGHRDEVLSADYDLLGEKIMSC-------GMDHSLKLWRINSKRMMNAIKES 202 (366)
T ss_dssp EETTSCEEEEETTTT----EEEEEECSTTSCSSCEEEEEECTTSSEEEEE-------ETTSCEEEEESCSHHHHHHHHHH
T ss_pred EeCCCeEEEEEeecC----eEEEEecccccccCceeEEEECCCCCEEEEe-------cCCCCEEEEECCCCcccccccee
Confidence 999999999999988 777777 5777 999999999986 8889 999999999999876554433
Q ss_pred --------------------------cCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCCc--------c---------
Q 041206 254 --------------------------GHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKNN--------A--------- 290 (371)
Q Consensus 254 --------------------------~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------~--------- 290 (371)
.|...|.+++|+++++++++.|+.|++||+...... .
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (366)
T 3k26_A 203 YDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD 282 (366)
T ss_dssp HTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE
T ss_pred EEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccc
Confidence 399999999999999999999999999998765430 0
Q ss_pred -eecceEEEEecCC--CCEEEEecCCCeEEEEEcCCcceee----eec-C--CceEEEEEeCCCC-eEEeeCCCCcEEEE
Q 041206 291 -ELSSLFGMLDAEA--KPVLFSSGKDSAIRLYELPSFKLRA----RIF-S--RREVEVDQIGPAG-LFFPGDASGSVGVW 359 (371)
Q Consensus 291 -~~~~~~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~----~~~-~--~~~v~~~~~s~~~-~l~~~~~dg~i~iw 359 (371)
+...+..+.+.++ +.+|++++.||.|++||+.++++.. .+. + ...|++++|+|++ +|++++.||.|++|
T Consensus 283 ~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 362 (366)
T 3k26_A 283 YSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRW 362 (366)
T ss_dssp CSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEE
Confidence 0011222223333 6699999999999999999876433 444 3 5899999999999 99999999999999
Q ss_pred Ecc
Q 041206 360 KWL 362 (371)
Q Consensus 360 ~~~ 362 (371)
|+.
T Consensus 363 d~~ 365 (366)
T 3k26_A 363 DRL 365 (366)
T ss_dssp EC-
T ss_pred Eec
Confidence 985
No 40
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3e-36 Score=306.88 Aligned_cols=330 Identities=16% Similarity=0.207 Sum_probs=276.9
Q ss_pred ccCCCCceeeccCcc-------cccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCc
Q 041206 14 KHSEGGETMMSDDDD-------LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSL 86 (371)
Q Consensus 14 ~~sp~g~~l~~~~~d-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (371)
.|||+|+++++++.| ..+++.+..+.+|...|.+++++|.+.++. .++.++.+++|+ ..++
T Consensus 622 ~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~----s~~~d~~v~vwd--------~~~~ 689 (1249)
T 3sfz_A 622 CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA----TCSADKKVKIWD--------SATG 689 (1249)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE----EEETTSEEEEEE--------TTTC
T ss_pred EECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEE----EEeCCCeEEEEE--------CCCC
Confidence 599999999999876 457888999999999999999999776543 356788999999 4567
Q ss_pred eeeEeeeCccCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceEEEEeC-CCeeEEEee--cCCEEEE-ecCCcEEE
Q 041206 87 ATLMKLNGHKKAVTNVGLPS--GSNKLYSGSRDGRVSVWDRDSGRCVNVITN-GAEIGCLIS--EGSWVFL-GLPNAVKS 160 (371)
Q Consensus 87 ~~~~~l~~h~~~V~~~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~-~~~~~i~~ 160 (371)
+.+..+.+|...|.+++|+| ++.++++|+.||.|++||+.++++...+.. ...+.++.+ ++.++++ +.|+.|++
T Consensus 690 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~v 769 (1249)
T 3sfz_A 690 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769 (1249)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEE
T ss_pred ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEE
Confidence 88999999999999999999 566899999999999999999999888765 456776654 5677766 56899999
Q ss_pred EEeCCC------------------------CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEe-cCc-ceE
Q 041206 161 WRVNAA------------------------SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIR-APL-WFC 212 (371)
Q Consensus 161 ~~~~~~------------------------~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~-~v~ 212 (371)
||+.++ .+.+++|+|+ .+++++ ++.+.+||+.++ .....+. +|. .+.
T Consensus 770 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~----~~~~~~~~~~~~~v~ 844 (1249)
T 3sfz_A 770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTS----GLLAEIHTGHHSTIQ 844 (1249)
T ss_dssp EEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTC----CEEEEEECSSSSCCC
T ss_pred EeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCC----CceeEEcCCCCCceE
Confidence 998765 5677888888 666655 799999999988 5555555 667 999
Q ss_pred EEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCc
Q 041206 213 SLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNN 289 (371)
Q Consensus 213 ~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~ 289 (371)
+++|+|++. ++++ +.|+.|++||+.+++.+..+.+|...|.+++|+ +++|++++.|+.|++|++......
T Consensus 845 ~~~~sp~~~~l~~~-------~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~ 917 (1249)
T 3sfz_A 845 YCDFSPYDHLAVIA-------LSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 917 (1249)
T ss_dssp EEEECSSTTEEEEE-------CSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSC
T ss_pred EEEEcCCCCEEEEE-------eCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcccccee
Confidence 999999986 8888 999999999999999999999999999999999 679999999999999996531100
Q ss_pred -----------------------------------------ceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceee
Q 041206 290 -----------------------------------------AELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRA 328 (371)
Q Consensus 290 -----------------------------------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 328 (371)
.....+..+...+++.++++|+.+|.|++||+.+++...
T Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~ 997 (1249)
T 3sfz_A 918 SAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFS 997 (1249)
T ss_dssp CSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEE
T ss_pred eeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceee
Confidence 001234455566677799999999999999999998877
Q ss_pred eec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccccee
Q 041206 329 RIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 329 ~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~ 367 (371)
.+. |...|++++|+|++ +|++++.||.|++|++.+++..
T Consensus 998 ~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A 998 SGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp ECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE
T ss_pred ecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE
Confidence 766 67899999999999 9999999999999999887654
No 41
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1e-35 Score=268.80 Aligned_cols=255 Identities=20% Similarity=0.276 Sum_probs=210.7
Q ss_pred CccceEEEEEeccCCCCccCCceeeEee--eCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEE
Q 041206 65 DKCRFLHSWVHSVDGDNTTNSLATLMKL--NGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGC 142 (371)
Q Consensus 65 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l--~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 142 (371)
+.++.|++|+ ..+++.++.+ .+|...|++++|+|++++||+|+.||+|++||+++++++..+..
T Consensus 122 gld~tV~lWd--------~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~------ 187 (420)
T 4gga_A 122 ALDNSVYLWS--------ASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS------ 187 (420)
T ss_dssp EETTEEEEEE--------TTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC------
T ss_pred EeCCEEEEEE--------CCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeC------
Confidence 4578999999 4455655544 57888999999999999999999999999999999998887765
Q ss_pred EeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce
Q 041206 143 LISEGSWVFLGLPNAVKSWRVNAASVNALVVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR 221 (371)
Q Consensus 143 ~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 221 (371)
|...+.++++++..+++|+.|+.+++||..... ..+..+.+|. .+..+.++|++.
T Consensus 188 ---------------------h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~---~~~~~~~~h~~~~~~~~~~~~g~ 243 (420)
T 4gga_A 188 ---------------------HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAE---HHVATLSGHSQEVCGLRWAPDGR 243 (420)
T ss_dssp ---------------------CSSCEEEEEEETTEEEEEETTSEEEEEETTSSS---CEEEEEECCSSCEEEEEECTTSS
T ss_pred ---------------------CCCceEEEeeCCCEEEEEeCCCceeEeeecccc---eeeEEecccccceeeeeecCCCC
Confidence 445688999999999999999999999998763 5667888999 999999999986
Q ss_pred -eEecccceeeeeCCCeEEEEECCCce----EEEEeecCCCcEEEEEEc---CCeEEE--EeCCCcEEEEEccCCCCcce
Q 041206 222 -WNSKEEAAVFEFCGHTTRTWNLDNLE----CVQTLKGHSDTVTSLLFW---DEYLFS--SSLDETIKIWLYTHTKNNAE 291 (371)
Q Consensus 222 -l~~~~~~~~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~---~~~l~s--~~~dg~i~iwd~~~~~~~~~ 291 (371)
++++ +.|+.+++||..+++ .+.....|...|.+++|+ ++.+++ |+.|++|++||+........
T Consensus 244 ~l~s~-------~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~ 316 (420)
T 4gga_A 244 HLASG-------GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 316 (420)
T ss_dssp EEEEE-------ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE
T ss_pred eeeee-------eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee
Confidence 8899 999999999998765 356677899999999998 456655 45899999999887664222
Q ss_pred e---cceEEE-EecCCCCEEEEe--cCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccc
Q 041206 292 L---SSLFGM-LDAEAKPVLFSS--GKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 292 ~---~~~~~~-~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~ 363 (371)
+ ..+..+ +.+++. .++++ +.|+.|+|||+.+++++..+. |.+.|++++|+|+| +|++|+.||+|+|||+.+
T Consensus 317 ~~~~~~v~~~~~~~~~~-~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 317 VDAHSQVCSILWSPHYK-ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp EECSSCEEEEEEETTTT-EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred eccccceeeeeecCCCC-eEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 1 123333 444444 55544 479999999999999999887 68899999999999 999999999999999976
Q ss_pred cc
Q 041206 364 AE 365 (371)
Q Consensus 364 ~~ 365 (371)
..
T Consensus 396 ~~ 397 (420)
T 4gga_A 396 LD 397 (420)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 42
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7.6e-36 Score=266.34 Aligned_cols=281 Identities=12% Similarity=0.159 Sum_probs=223.1
Q ss_pred ccceeEEEEEeeccceeeeeeeecc-eeeccceeeCCccceEEEEEeccCCCCccCCceeeEee--eCccCCeEEEEEcC
Q 041206 30 MKGRAEEREEMFGFGLAAMAIRVCN-NWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKL--NGHKKAVTNVGLPS 106 (371)
Q Consensus 30 ~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l--~~h~~~V~~~~~~~ 106 (371)
...++...+.+|...|.+++++|.. .++ ..++.++.|++|+. ...+....+ .+|...|.+++|+|
T Consensus 61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l----~s~~~dg~i~iwd~--------~~~~~~~~~~~~~h~~~v~~~~~~~ 128 (383)
T 3ei3_B 61 KSYKLHRTASPFDRRVTSLEWHPTHPTTV----AVGSKGGDIILWDY--------DVQNKTSFIQGMGPGDAITGMKFNQ 128 (383)
T ss_dssp TTCEEEEEECCCSSCEEEEEECSSCTTEE----EEEEBTSCEEEEET--------TSTTCEEEECCCSTTCBEEEEEEET
T ss_pred cccceEEeccCCCCCEEEEEECCCCCCEE----EEEcCCCeEEEEeC--------CCcccceeeecCCcCCceeEEEeCC
Confidence 4567788899999999999999975 322 23567889999993 233444444 47999999999999
Q ss_pred -CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeC
Q 041206 107 -GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSE 183 (371)
Q Consensus 107 -~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~ 183 (371)
++++|++++.|+.|++||+.+ .....+..... +...|.+++|+|+ ++++++.
T Consensus 129 ~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~------------------------~~~~v~~~~~~~~~~~l~~~~~ 183 (383)
T 3ei3_B 129 FNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDS------------------------WDYWYCCVDVSVSRQMLATGDS 183 (383)
T ss_dssp TEEEEEEEEETTTEEEEEETTS-CEEEEEECCCC------------------------SSCCEEEEEEETTTTEEEEEET
T ss_pred CCCCEEEEEeCCCEEEEEECCC-CceEEEeccCC------------------------CCCCeEEEEECCCCCEEEEECC
Confidence 789999999999999999985 44444433211 2346999999998 9999999
Q ss_pred CCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce--eEecccceeeeeCCCeEEEEECCC----ceEEEEeecCC
Q 041206 184 GGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR--WNSKEEAAVFEFCGHTTRTWNLDN----LECVQTLKGHS 256 (371)
Q Consensus 184 dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~iwd~~~----~~~~~~~~~~~ 256 (371)
|+.|++||++ + +.+..+..|. .|.+++|+|++. ++++ +.|+.|++||+++ ++++..+ +|.
T Consensus 184 d~~i~i~d~~-~----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-------~~d~~i~iwd~~~~~~~~~~~~~~-~~~ 250 (383)
T 3ei3_B 184 TGRLLLLGLD-G----HEIFKEKLHKAKVTHAEFNPRCDWLMATS-------SVDATVKLWDLRNIKDKNSYIAEM-PHE 250 (383)
T ss_dssp TSEEEEEETT-S----CEEEEEECSSSCEEEEEECSSCTTEEEEE-------ETTSEEEEEEGGGCCSTTCEEEEE-ECS
T ss_pred CCCEEEEECC-C----CEEEEeccCCCcEEEEEECCCCCCEEEEE-------eCCCEEEEEeCCCCCcccceEEEe-cCC
Confidence 9999999994 4 6788889999 999999999985 7888 9999999999997 6677766 699
Q ss_pred CcEEEEEEcC---CeEEEEeCCCcEEEEEccCCCCcceec-----------c----------eEEEEecCCCCEEEEecC
Q 041206 257 DTVTSLLFWD---EYLFSSSLDETIKIWLYTHTKNNAELS-----------S----------LFGMLDAEAKPVLFSSGK 312 (371)
Q Consensus 257 ~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~-----------~----------~~~~~~~~~~~~l~~~~~ 312 (371)
..|.+++|++ ++|++++.|+.|++||++.......+. . +..+.+.+++.+ +++.
T Consensus 251 ~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~ 328 (383)
T 3ei3_B 251 KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLND 328 (383)
T ss_dssp SCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTC
T ss_pred CceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCC
Confidence 9999999985 799999999999999987765422211 1 111222233323 6779
Q ss_pred CCeEEEEEcCCcceeeeec---CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccc
Q 041206 313 DSAIRLYELPSFKLRARIF---SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 313 d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~ 363 (371)
|+.|++||+.+++++..+. +...+..++|+|++ +|++|+ ||.|++|++++
T Consensus 329 d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 329 KRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 9999999999999988887 35677888999999 999996 99999999975
No 43
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.4e-37 Score=282.24 Aligned_cols=290 Identities=13% Similarity=0.169 Sum_probs=217.1
Q ss_pred cceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcC-CCC
Q 041206 31 KGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPS-GSN 109 (371)
Q Consensus 31 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-~~~ 109 (371)
..++.....+|...|++++|+|...- ....|+.++.|++|+.. .........+.+|.+.|++++|+| +++
T Consensus 108 ~~~~~~~~~~~~~~V~~l~~~P~~~~---~lasGs~dg~i~lWd~~------~~~~~~~~~~~gH~~~V~~l~f~p~~~~ 178 (435)
T 4e54_B 108 SYRILQKAAPFDRRATSLAWHPTHPS---TVAVGSKGGDIMLWNFG------IKDKPTFIKGIGAGGSITGLKFNPLNTN 178 (435)
T ss_dssp TTTSCCEEEECSSCEEEEEECSSCTT---CEEEEETTSCEEEECSS------CCSCCEEECCCSSSCCCCEEEECSSCTT
T ss_pred ceeecccCCCCCCCEEEEEEeCCCCC---EEEEEeCCCEEEEEECC------CCCceeEEEccCCCCCEEEEEEeCCCCC
Confidence 34556678899999999999985331 12347789999999932 223345667789999999999998 789
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeE
Q 041206 110 KLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVI 187 (371)
Q Consensus 110 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v 187 (371)
+|+||+.||+|++||++++........+. ....+.+++++++ +|++|+.||.|
T Consensus 179 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~l~~g~~dg~i 233 (435)
T 4e54_B 179 QFYASSMEGTTRLQDFKGNILRVFASSDT-------------------------INIWFCSLDVSASSRMVVTGDNVGNV 233 (435)
T ss_dssp EEEEECSSSCEEEEETTSCEEEEEECCSS-------------------------CSCCCCCEEEETTTTEEEEECSSSBE
T ss_pred EEEEEeCCCEEEEeeccCCceeEEeccCC-------------------------CCccEEEEEECCCCCEEEEEeCCCcE
Confidence 99999999999999998665433322211 1224778899988 99999999999
Q ss_pred EEEeccCCCCcceeeEEEecCc-ceEEEEecCCce--eEecccceeeeeCCCeEEEEECCCceEEE---EeecCCCcEEE
Q 041206 188 SVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR--WNSKEEAAVFEFCGHTTRTWNLDNLECVQ---TLKGHSDTVTS 261 (371)
Q Consensus 188 ~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~ 261 (371)
++||++. +.+..+.+|. .|.+++|+|++. ++++ +.|+.|++||+++.+... ...+|...|++
T Consensus 234 ~~wd~~~-----~~~~~~~~h~~~v~~v~~~p~~~~~~~s~-------s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~ 301 (435)
T 4e54_B 234 ILLNMDG-----KELWNLRMHKKKVTHVALNPCCDWFLATA-------SVDQTVKIWDLRQVRGKASFLYSLPHRHPVNA 301 (435)
T ss_dssp EEEESSS-----CBCCCSBCCSSCEEEEEECTTCSSEEEEE-------ETTSBCCEEETTTCCSSSCCSBCCBCSSCEEE
T ss_pred eeeccCc-----ceeEEEecccceEEeeeecCCCceEEEEe-------cCcceeeEEecccccccceEEEeeeccccccc
Confidence 9999875 4566788898 999999999874 7788 999999999998866543 33579999999
Q ss_pred EEEc--CCeEEEEeCCCcEEEEEccCCCCcc-----------eecceEEEEecCCCCEEEEe------------cCCCeE
Q 041206 262 LLFW--DEYLFSSSLDETIKIWLYTHTKNNA-----------ELSSLFGMLDAEAKPVLFSS------------GKDSAI 316 (371)
Q Consensus 262 ~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~------------~~d~~i 316 (371)
++|+ +++|++++.|+.|++||+....... ....+...+.+.+. +++++ ..++.|
T Consensus 302 ~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~i 380 (435)
T 4e54_B 302 ACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYN-LIVVGRYPDPNFKSCTPYELRTI 380 (435)
T ss_dssp CCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSS-CEEEECCCCTTSCCSSTTCCCCE
T ss_pred eeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCC-EEEEEEcCCCCeEEEEecCCCEE
Confidence 9998 6799999999999999987654211 11122222333333 34333 244689
Q ss_pred EEEEcCCcceeeeec--CCceEEEE-EeCCCC-eEEeeCCCCcEEEEEccccceec
Q 041206 317 RLYELPSFKLRARIF--SRREVEVD-QIGPAG-LFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 317 ~iwd~~~~~~~~~~~--~~~~v~~~-~~s~~~-~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
++||..+++.+..+. +...|.++ +|+|+| +|++|+ |+.|+||++++++.+|
T Consensus 381 ~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~rK 435 (435)
T 4e54_B 381 DVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTRK 435 (435)
T ss_dssp EEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC------
T ss_pred EEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeeeC
Confidence 999999999888775 46678777 699999 888876 8899999999887654
No 44
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-35 Score=254.07 Aligned_cols=282 Identities=15% Similarity=0.116 Sum_probs=233.2
Q ss_pred cceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCE
Q 041206 31 KGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNK 110 (371)
Q Consensus 31 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 110 (371)
..++...+.+|...|.++++ +...+ ...++.++.+++|+ ..+.+....+.+|...|.+++|+|++++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~----l~s~~~dg~v~vw~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 73 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSK----VASVSRDGTVRLWS--------KDDQWLGTVVYTGQGFLNSVCYDSEKEL 73 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTE----EEEEETTSEEEEEE--------ESSSEEEEEEEECSSCEEEEEEETTTTE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCE----EEEEEcCCcEEEEE--------CCCCEEEEEeecCCccEEEEEECCCCCE
Confidence 45788899999999999999 54332 22367889999999 3556788899999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCC---ceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCCEEEEEeCCCeE
Q 041206 111 LYSGSRDGRVSVWDRDSG---RCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNNDLLFAGSEGGVI 187 (371)
Q Consensus 111 l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~l~~~~~dg~v 187 (371)
|++++.||.|++|++... +....+. .|...|.+++++++.+++++.||.|
T Consensus 74 l~~~~~dg~i~~~~~~~~~~~~~~~~~~---------------------------~~~~~i~~~~~~~~~l~~~~~d~~i 126 (313)
T 3odt_A 74 LLFGGKDTMINGVPLFATSGEDPLYTLI---------------------------GHQGNVCSLSFQDGVVISGSWDKTA 126 (313)
T ss_dssp EEEEETTSCEEEEETTCCTTSCC-CEEC---------------------------CCSSCEEEEEEETTEEEEEETTSEE
T ss_pred EEEecCCCeEEEEEeeecCCCCcccchh---------------------------hcccCEEEEEecCCEEEEEeCCCCE
Confidence 999999999999998765 2333332 2556799999988899999999999
Q ss_pred EEEeccCCCCcceeeEEEecCc-ceEEEEecC-Cc-eeEecccceeeeeCCCeEEEEECCCceEEEEeec-CCCcEEEEE
Q 041206 188 SVWKGTFVANPFKQVASIRAPL-WFCSLSSSN-DT-RWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKG-HSDTVTSLL 263 (371)
Q Consensus 188 ~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~-~~-~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~ 263 (371)
++|| .. +....+..|. .+.++++.| ++ .++++ +.|+.|++|| ..+.+..+.. |...+.+++
T Consensus 127 ~~~d--~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-------~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~ 191 (313)
T 3odt_A 127 KVWK--EG----SLVYNLQAHNASVWDAKVVSFSENKFLTA-------SADKTIKLWQ--NDKVIKTFSGIHNDVVRHLA 191 (313)
T ss_dssp EEEE--TT----EEEEEEECCSSCEEEEEEEETTTTEEEEE-------ETTSCEEEEE--TTEEEEEECSSCSSCEEEEE
T ss_pred EEEc--CC----cEEEecccCCCceeEEEEccCCCCEEEEE-------ECCCCEEEEe--cCceEEEEeccCcccEEEEE
Confidence 9999 33 6788888888 999999988 55 48899 9999999999 4566777776 899999999
Q ss_pred Ec-CCeEEEEeCCCcEEEEEccCCCCcc----eecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEE
Q 041206 264 FW-DEYLFSSSLDETIKIWLYTHTKNNA----ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVE 337 (371)
Q Consensus 264 ~~-~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~ 337 (371)
|+ +..+++++.|+.|++||++..+... +...+..+.+.+++ .+++++.||.|++||+++++++..+. +..+|.
T Consensus 192 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~ 270 (313)
T 3odt_A 192 VVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIW 270 (313)
T ss_dssp EEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEE
T ss_pred EcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEE
Confidence 98 4569999999999999998766422 22345666666666 58899999999999999999888876 567999
Q ss_pred EEEeCCCCeEEeeCCCCcEEEEEccccceec
Q 041206 338 VDQIGPAGLFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 338 ~~~~s~~~~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
+++|+|++.+++++.||.|++|++.+++...
T Consensus 271 ~~~~~~~~~~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 271 SVDCMSNGDIIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp EEEECTTSCEEEEETTSCEEEEESCGGGCCC
T ss_pred EEEEccCCCEEEEeCCCcEEEEeCCCCceee
Confidence 9999999966678999999999999876544
No 45
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=7e-37 Score=276.28 Aligned_cols=300 Identities=12% Similarity=0.092 Sum_probs=232.0
Q ss_pred CcccCCCCceeeccCccc-------ccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccC
Q 041206 12 EHKHSEGGETMMSDDDDL-------MKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTN 84 (371)
Q Consensus 12 ~~~~sp~g~~l~~~~~d~-------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (371)
...|+|+|++|+++..|. ..++....+..| ..+....+++...++ ..++.++.+++|+ ..
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l----~~~~~dg~i~iwd--------~~ 127 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRF----ILGTTEGDIKVLD--------SN 127 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEE----EEEETTSCEEEEC--------TT
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEE----EEEECCCCEEEEe--------CC
Confidence 457999999999998762 222322223333 223333455544432 3356788999999 34
Q ss_pred CceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeC
Q 041206 85 SLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVN 164 (371)
Q Consensus 85 ~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 164 (371)
..+....+.+|.+.|++++|+|++++|++|+.|++|++||+.+++.+..+.. |
T Consensus 128 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~---------------------------h 180 (420)
T 3vl1_A 128 FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG---------------------------H 180 (420)
T ss_dssp SCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEEC---------------------------C
T ss_pred CcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcC---------------------------C
Confidence 5677888899999999999999999999999999999999999887776653 5
Q ss_pred CCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecC---c-ceEE---------------------EEec
Q 041206 165 AASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAP---L-WFCS---------------------LSSS 217 (371)
Q Consensus 165 ~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~---~-~v~~---------------------~~~~ 217 (371)
...|.+++|+|+ +|++++.|+.|++||++++ +.+..+..+ . .+.+ ++|+
T Consensus 181 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s 256 (420)
T 3vl1_A 181 RATVTDIAIIDRGRNVLSASLDGTIRLWECGTG----TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG 256 (420)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEETTTT----EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCC----ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc
Confidence 557999999988 8999999999999999988 777777642 2 4444 4557
Q ss_pred CCce-eEecccceeeeeCCCeEEEEECCCceEEEEee-cCCCcEEEEEEc--CC-eEEEEeCCCcEEEEEccCCCC-cc-
Q 041206 218 NDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLK-GHSDTVTSLLFW--DE-YLFSSSLDETIKIWLYTHTKN-NA- 290 (371)
Q Consensus 218 ~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~-~~- 290 (371)
|+++ ++++ +.||.|++||+++++.+..+. .|...|.+++|+ +. +|++++.||.|++||++..+. ..
T Consensus 257 ~~~~~l~~~-------~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~ 329 (420)
T 3vl1_A 257 TYGKYVIAG-------HVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGE 329 (420)
T ss_dssp CTTEEEEEE-------ETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE
T ss_pred CCCCEEEEE-------cCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhh
Confidence 7776 7888 999999999999988877665 588899999999 34 999999999999999987643 11
Q ss_pred ----eecceEEEEecCCCCEEEEecCCCeEEEEEcCCcce----------eeeecCCceEEEEEeCCCC----eEEeeCC
Q 041206 291 ----ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKL----------RARIFSRREVEVDQIGPAG----LFFPGDA 352 (371)
Q Consensus 291 ----~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------~~~~~~~~~v~~~~~s~~~----~l~~~~~ 352 (371)
....+..+.++++. +|++++.|+.|++||+..... .....+...|.+++|+|++ .+++.+.
T Consensus 330 ~~~~~~~~v~~~~~~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~ 408 (420)
T 3vl1_A 330 FLINEGTPINNVYFAAGA-LFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGK 408 (420)
T ss_dssp EEESTTSCEEEEEEETTE-EEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEET
T ss_pred hhccCCCCceEEEeCCCC-EEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcC
Confidence 12345666676654 999999999999999887321 1222357789999999988 3888888
Q ss_pred CCcEEEEEccc
Q 041206 353 SGSVGVWKWLL 363 (371)
Q Consensus 353 dg~i~iw~~~~ 363 (371)
+|.+.+|+++.
T Consensus 409 ~g~~~~~~~~~ 419 (420)
T 3vl1_A 409 NNFCALYNLSN 419 (420)
T ss_dssp TTEEEEEESCC
T ss_pred CceEEEEeccC
Confidence 99999999875
No 46
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.8e-36 Score=262.83 Aligned_cols=248 Identities=16% Similarity=0.198 Sum_probs=202.7
Q ss_pred CCceeeEeeeCccC-CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEE
Q 041206 84 NSLATLMKLNGHKK-AVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWR 162 (371)
Q Consensus 84 ~~~~~~~~l~~h~~-~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 162 (371)
+..+++.++++|.. .|.+++|+|++++||+|+.|++|+|||+.++......... .
T Consensus 3 ~~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~------------------------~ 58 (345)
T 3fm0_A 3 DSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS------------------------E 58 (345)
T ss_dssp -CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEEC------------------------S
T ss_pred ccEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeec------------------------c
Confidence 35578899999998 9999999999999999999999999999877643222110 1
Q ss_pred eCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeE
Q 041206 163 VNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTT 238 (371)
Q Consensus 163 ~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i 238 (371)
.|...|.+++|+|+ +|++|+.|+.+++||+.... .+.+..+.+|. .|.+++|+|+++ |+++ +.|+.|
T Consensus 59 ~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~--~~~~~~~~~h~~~v~~v~~sp~~~~l~s~-------s~D~~v 129 (345)
T 3fm0_A 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD--FECVTTLEGHENEVKSVAWAPSGNLLATC-------SRDKSV 129 (345)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC---EEEEEEECCCSSCEEEEEECTTSSEEEEE-------ETTSCE
T ss_pred ccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCC--eEEEEEccCCCCCceEEEEeCCCCEEEEE-------ECCCeE
Confidence 15567999999998 99999999999999987652 14577888999 999999999986 8999 999999
Q ss_pred EEEECCCc---eEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC------cceecceEEEEecCCCCEE
Q 041206 239 RTWNLDNL---ECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN------NAELSSLFGMLDAEAKPVL 307 (371)
Q Consensus 239 ~iwd~~~~---~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~l 307 (371)
++||++++ +++..+.+|...|.+++|+ +++|++++.|+.|++||++.... ..+...+..+.+.+++.+|
T Consensus 130 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l 209 (345)
T 3fm0_A 130 WVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRL 209 (345)
T ss_dssp EEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred EEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEE
Confidence 99999865 4567788999999999998 67999999999999999875431 2233456666777777799
Q ss_pred EEecCCCeEEEEEcCCc---------------ceeeeec--CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccc
Q 041206 308 FSSGKDSAIRLYELPSF---------------KLRARIF--SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 308 ~~~~~d~~i~iwd~~~~---------------~~~~~~~--~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
++++.|++|++||.... +++..+. |...|++++|+|++ .|++++.|+.|++|+....
T Consensus 210 ~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 210 ASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp EEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred EEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence 99999999999996322 1222222 57789999999999 9999999999999998654
No 47
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5.6e-36 Score=257.82 Aligned_cols=239 Identities=12% Similarity=0.144 Sum_probs=193.6
Q ss_pred eEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCC
Q 041206 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSG--RCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAA 166 (371)
Q Consensus 89 ~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 166 (371)
+..+.+|.+.|++++|+|++++||+|+.|++|+|||+.++ +++.++.. |++
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~g---------------------------H~~ 54 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTG---------------------------HEG 54 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECC---------------------------CSS
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcc---------------------------ccC
Confidence 4578899999999999999999999999999999998743 44444443 666
Q ss_pred CeeEEEEeC----CEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCC--ce-eEecccceeeeeCCCeE
Q 041206 167 SVNALVVNN----DLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSND--TR-WNSKEEAAVFEFCGHTT 238 (371)
Q Consensus 167 ~v~~~~~~~----~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~--~~-l~~~~~~~~~~~~dg~i 238 (371)
.|.+++|++ ++|++|+.|+.|++||++++.. ..+..+..|. .|.+++|+|+ +. ++++ +.|+.|
T Consensus 55 ~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~--~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~-------s~d~~v 125 (297)
T 2pm7_B 55 PVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW--SQIAVHAVHSASVNSVQWAPHEYGPMLLVA-------SSDGKV 125 (297)
T ss_dssp CEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCB--CCCEEECCCSSCEEEEEECCGGGCSEEEEE-------ETTSEE
T ss_pred CeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCce--EEEEEeecCCCceeEEEeCcCCCCcEEEEE-------ECCCcE
Confidence 799999974 3999999999999999987621 3456677888 9999999997 54 8899 999999
Q ss_pred EEEECCCce--EEEEeecCCCcEEEEEEcC---------------CeEEEEeCCCcEEEEEccCCCC--------cceec
Q 041206 239 RTWNLDNLE--CVQTLKGHSDTVTSLLFWD---------------EYLFSSSLDETIKIWLYTHTKN--------NAELS 293 (371)
Q Consensus 239 ~iwd~~~~~--~~~~~~~~~~~v~~~~~~~---------------~~l~s~~~dg~i~iwd~~~~~~--------~~~~~ 293 (371)
++||++++. ....+.+|...|.+++|++ ++|++++.|++|++||++.... ..+..
T Consensus 126 ~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~ 205 (297)
T 2pm7_B 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD 205 (297)
T ss_dssp EEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred EEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC
Confidence 999998763 2456789999999999984 4899999999999999876542 12233
Q ss_pred ceEEEEecCC---CCEEEEecCCCeEEEEEcCCcc--ee-eee---cCCceEEEEEeCCCC-eEEeeCCCCcEEEEEccc
Q 041206 294 SLFGMLDAEA---KPVLFSSGKDSAIRLYELPSFK--LR-ARI---FSRREVEVDQIGPAG-LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 294 ~~~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~--~~-~~~---~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~ 363 (371)
.+..+.+.++ +.+|++++.|++|++||+++.. .. ..+ .+...|.+++|+|++ +|++++.||.|++|+...
T Consensus 206 ~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 206 WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred ceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 4555656554 4689999999999999998743 11 122 246789999999999 999999999999999863
No 48
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.1e-35 Score=264.09 Aligned_cols=261 Identities=17% Similarity=0.236 Sum_probs=216.5
Q ss_pred eCCccceEEEEEeccCCCCccCCceeeEeeeC-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeE
Q 041206 63 YGDKCRFLHSWVHSVDGDNTTNSLATLMKLNG-HKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIG 141 (371)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 141 (371)
.++.++.+++|+ ..+++....+.. |...|++++|+|++++|++|+.||.|++||+.+++.+..+..
T Consensus 108 ~~~~d~~v~lw~--------~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----- 174 (401)
T 4aez_A 108 AVALERNVYVWN--------ADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG----- 174 (401)
T ss_dssp EEEETTEEEEEE--------TTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-----
T ss_pred EEECCCeEEEee--------CCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecC-----
Confidence 356788999999 344566666665 899999999999999999999999999999999988877764
Q ss_pred EEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc
Q 041206 142 CLISEGSWVFLGLPNAVKSWRVNAASVNALVVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT 220 (371)
Q Consensus 142 ~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~ 220 (371)
|...|.+++|+++.+++++.||.|++||++... .....+..|. .|.+++|+|++
T Consensus 175 ----------------------~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~ 229 (401)
T 4aez_A 175 ----------------------HQARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN---HQIGTLQGHSSEVCGLAWRSDG 229 (401)
T ss_dssp ----------------------CSSCEEEEEEETTEEEEEETTSEEEEEETTSSS---CEEEEEECCSSCEEEEEECTTS
T ss_pred ----------------------CCCceEEEEECCCEEEEEcCCCCEEEEecccCc---ceeeEEcCCCCCeeEEEEcCCC
Confidence 455799999999999999999999999998542 6677888899 99999999998
Q ss_pred e-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEcC---CeEEEEe--CCCcEEEEEccCCCCccee--
Q 041206 221 R-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWD---EYLFSSS--LDETIKIWLYTHTKNNAEL-- 292 (371)
Q Consensus 221 ~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~--~dg~i~iwd~~~~~~~~~~-- 292 (371)
. ++++ +.|+.|++||+++++++..+..|...|.+++|++ .++++++ .|+.|++||+...+....+
T Consensus 230 ~~l~s~-------~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~ 302 (401)
T 4aez_A 230 LQLASG-------GNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA 302 (401)
T ss_dssp SEEEEE-------ETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC
T ss_pred CEEEEE-------eCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC
Confidence 6 8899 9999999999999999999999999999999983 5677765 7999999998876642222
Q ss_pred -cceEEEEecCCCCEEEE--ecCCCeEEEEEcCCcceeee--ec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccc
Q 041206 293 -SSLFGMLDAEAKPVLFS--SGKDSAIRLYELPSFKLRAR--IF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 293 -~~~~~~~~~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~--~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~ 365 (371)
..+..+.+.+++.++++ |+.||.|++||+.+++.... +. |...|.+++|+|++ +|++++.||.|++|++.+++
T Consensus 303 ~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 303 GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 34566666777778888 55899999999998654443 32 67899999999999 99999999999999998876
Q ss_pred eec
Q 041206 366 QQK 368 (371)
Q Consensus 366 ~~~ 368 (371)
..+
T Consensus 383 ~~~ 385 (401)
T 4aez_A 383 HVK 385 (401)
T ss_dssp ---
T ss_pred ccc
Confidence 543
No 49
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.1e-35 Score=277.32 Aligned_cols=329 Identities=13% Similarity=0.102 Sum_probs=251.0
Q ss_pred cccCCCCc-eeeccCcc-------cccceeEEEEEeecc---ceeeeeeeec-ceeeccceeeCCccceEEEEEeccCCC
Q 041206 13 HKHSEGGE-TMMSDDDD-------LMKGRAEEREEMFGF---GLAAMAIRVC-NNWISDSCVYGDKCRFLHSWVHSVDGD 80 (371)
Q Consensus 13 ~~~sp~g~-~l~~~~~d-------~~~~~~~~~~~~h~~---~v~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~ 80 (371)
..|+|+++ .+++++.| ...++.+..+.+|.. .|.+++++|. ..++. .++.++.+++|+
T Consensus 166 ~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~----~~~~dg~i~vwd------ 235 (615)
T 1pgu_A 166 CHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI----TVGSDRKISCFD------ 235 (615)
T ss_dssp EEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEE----EEETTCCEEEEE------
T ss_pred EEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEE----EEeCCCeEEEEE------
Confidence 35899998 68887766 456888999999999 9999999997 55332 356688999999
Q ss_pred CccCCceeeEee-e---CccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-----CeeEEEe-ecCCEE
Q 041206 81 NTTNSLATLMKL-N---GHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNG-----AEIGCLI-SEGSWV 150 (371)
Q Consensus 81 ~~~~~~~~~~~l-~---~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-----~~~~~~~-~~~~~~ 150 (371)
...++.+..+ . +|...|.+++|+ ++++|++++.||.|++||+.+++.+..+..+ ..+.++. +++.++
T Consensus 236 --~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 312 (615)
T 1pgu_A 236 --GKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI 312 (615)
T ss_dssp --TTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEE
T ss_pred --CCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeE
Confidence 3556788888 6 899999999999 9999999999999999999999998888765 3344433 356666
Q ss_pred EE-ecCCcEEEEEeCC-----------CCeeEEE---------------------------------EeCC-EEEEEeCC
Q 041206 151 FL-GLPNAVKSWRVNA-----------ASVNALV---------------------------------VNND-LLFAGSEG 184 (371)
Q Consensus 151 ~~-~~~~~i~~~~~~~-----------~~v~~~~---------------------------------~~~~-~l~~~~~d 184 (371)
++ +.++.+++||+.+ ..|.+++ +.+. .+++++.|
T Consensus 313 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d 392 (615)
T 1pgu_A 313 ISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWD 392 (615)
T ss_dssp EEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETT
T ss_pred EEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCC
Confidence 55 5678888888643 2444444 4323 55666666
Q ss_pred CeEEEEeccCCCC------------------------------cceeeEEEecCc-ceEEEEecCCceeEecccceeeee
Q 041206 185 GVISVWKGTFVAN------------------------------PFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEF 233 (371)
Q Consensus 185 g~v~iwd~~~~~~------------------------------~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~ 233 (371)
+.|++||+.+... ..+.+..+. +. .+.+++++ ...++++ +
T Consensus 393 ~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~l~~~-------~ 463 (615)
T 1pgu_A 393 DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS-QNYVAVG-------L 463 (615)
T ss_dssp TEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC-SSEEEEE-------E
T ss_pred CCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc-CCEEEEe-------e
Confidence 6666666543210 002222232 33 67777777 3346677 8
Q ss_pred C-CCeEEEEECCCceEE-EEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCc----c-eecceEEEEecC--
Q 041206 234 C-GHTTRTWNLDNLECV-QTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNN----A-ELSSLFGMLDAE-- 302 (371)
Q Consensus 234 ~-dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~----~-~~~~~~~~~~~~-- 302 (371)
. |+.|++||+.+++.. ..+..|...|.+++|+ +++|++++.|+.|++||+...+.. . +...+..+.+.+
T Consensus 464 ~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 543 (615)
T 1pgu_A 464 EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAE 543 (615)
T ss_dssp TTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC
T ss_pred cCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcc
Confidence 8 999999999988766 6778899999999998 689999999999999998765531 1 334566667776
Q ss_pred --------CCCEEEEecCCCeEEEEEcCCc-ceeeeec-CCceEEEEEeCCCCeEEeeCCCCcEEEEEccc
Q 041206 303 --------AKPVLFSSGKDSAIRLYELPSF-KLRARIF-SRREVEVDQIGPAGLFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 303 --------~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~-~~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~~ 363 (371)
++.+|++++.|+.|++||+.++ +++..+. |...|++++|+|++.|++++.||.|++|++..
T Consensus 544 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 544 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNVVL 614 (615)
T ss_dssp ------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEEC-
T ss_pred ccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCCeEEecCCceEEEEeeec
Confidence 7779999999999999999997 5666655 68899999999999899999999999999875
No 50
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-37 Score=279.31 Aligned_cols=309 Identities=16% Similarity=0.185 Sum_probs=240.4
Q ss_pred CcccCCCCc-eeecc----------Ccc-------cccce---eEEEEEeeccceeeeeeeecceeeccceeeCCccceE
Q 041206 12 EHKHSEGGE-TMMSD----------DDD-------LMKGR---AEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFL 70 (371)
Q Consensus 12 ~~~~sp~g~-~l~~~----------~~d-------~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i 70 (371)
...|+|+|+ +++++ +.| ...++ ++..+ .|...|.+++++|...++. .+..++.+
T Consensus 17 ~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~----~~~~dg~v 91 (416)
T 2pm9_A 17 TFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIA----GALDNGSL 91 (416)
T ss_dssp BCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEE----EEESSSCE
T ss_pred eEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEE----EEccCCeE
Confidence 356999998 88888 444 22232 33333 5889999999999766443 35668899
Q ss_pred EEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCc------eEEEEeCCCeeEEE
Q 041206 71 HSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSG-SNKLYSGSRDGRVSVWDRDSGR------CVNVITNGAEIGCL 143 (371)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~------~~~~~~~~~~~~~~ 143 (371)
++|+.... ....+.+..+.+|...|++++|+|+ +++|++++.||.|++||+.+++ ....+...
T Consensus 92 ~vw~~~~~----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~------ 161 (416)
T 2pm9_A 92 ELYSTNEA----NNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQS------ 161 (416)
T ss_dssp EEECCSST----TSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCS------
T ss_pred EEeecccc----cccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccc------
Confidence 99993210 0124588899999999999999998 8999999999999999999876 22222100
Q ss_pred eecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecC------c-ceEE
Q 041206 144 ISEGSWVFLGLPNAVKSWRVNAASVNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAP------L-WFCS 213 (371)
Q Consensus 144 ~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~------~-~v~~ 213 (371)
..+...|.+++|+|+ ++++++.||.|++||++++ +.+..+..+ . .+.+
T Consensus 162 ------------------~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~v~~ 219 (416)
T 2pm9_A 162 ------------------MSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK----KEVIHLSYTSPNSGIKQQLSV 219 (416)
T ss_dssp ------------------CCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT----EEEEEECCCCCSSCCCCCEEE
T ss_pred ------------------cCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC----CcceEEeccccccccCCceEE
Confidence 124557999999986 8999999999999999998 777777776 6 8999
Q ss_pred EEecCCc--eeEecccceeeeeCCC---eEEEEECCCc-eEEEEee-cCCCcEEEEEEc---CCeEEEEeCCCcEEEEEc
Q 041206 214 LSSSNDT--RWNSKEEAAVFEFCGH---TTRTWNLDNL-ECVQTLK-GHSDTVTSLLFW---DEYLFSSSLDETIKIWLY 283 (371)
Q Consensus 214 ~~~~~~~--~l~~~~~~~~~~~~dg---~i~iwd~~~~-~~~~~~~-~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~ 283 (371)
++|+|++ .++++ +.|+ .|++||++++ +++..+. +|...|.+++|+ +++|++++.|+.|++||+
T Consensus 220 ~~~~~~~~~~l~~~-------~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~ 292 (416)
T 2pm9_A 220 VEWHPKNSTRVATA-------TGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP 292 (416)
T ss_dssp EEECSSCTTEEEEE-------ECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECS
T ss_pred EEECCCCCCEEEEE-------ECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeC
Confidence 9999987 38888 8898 9999999986 6777888 899999999997 579999999999999998
Q ss_pred cCCCCcce----ecceEEEEecCCC-CEEEEecCCCeEEEEEcCCcceeeeec---------------------------
Q 041206 284 THTKNNAE----LSSLFGMLDAEAK-PVLFSSGKDSAIRLYELPSFKLRARIF--------------------------- 331 (371)
Q Consensus 284 ~~~~~~~~----~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~--------------------------- 331 (371)
+..+.... ...+..+.+.+++ .+|++++.|+.|++||+.+........
T Consensus 293 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (416)
T 2pm9_A 293 ESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPS 372 (416)
T ss_dssp SSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCC
T ss_pred CCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccc
Confidence 87654221 1233334444444 799999999999999998765332210
Q ss_pred ---------CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccc
Q 041206 332 ---------SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 332 ---------~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
+..++.+++|+|+| +|++++.||.|+||++.++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 373 VFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp SSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 34577899999999 9999999999999999864
No 51
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-35 Score=256.37 Aligned_cols=246 Identities=22% Similarity=0.287 Sum_probs=193.3
Q ss_pred CceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eEEEEeCCCeeEEEeecCCEEEEecCCcEEEEE
Q 041206 85 SLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGR--CVNVITNGAEIGCLISEGSWVFLGLPNAVKSWR 162 (371)
Q Consensus 85 ~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 162 (371)
..+++.++++|.++|.+++|+|+ +|++|+.|++|++||+.++. ....+...
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~------------------------- 55 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDET------------------------- 55 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTT-------------------------
T ss_pred ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecC-------------------------
Confidence 45678899999999999999987 99999999999999998753 33333110
Q ss_pred eCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCC---CcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCC
Q 041206 163 VNAASVNALVVNND--LLFAGSEGGVISVWKGTFVA---NPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCG 235 (371)
Q Consensus 163 ~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~d 235 (371)
.|...|.+++|+|+ +|++++.|+.|++||+.... ...+.+..+.+|. .|.+++|+|+++ |+++ +.|
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~-------s~D 128 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATC-------SRD 128 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEE-------ETT
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEE-------eCC
Confidence 14557999999998 99999999999999986432 1125677888999 999999999986 8999 999
Q ss_pred CeEEEEECCC----ceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCC--C----cceecceEEEEecCC
Q 041206 236 HTTRTWNLDN----LECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTK--N----NAELSSLFGMLDAEA 303 (371)
Q Consensus 236 g~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~--~----~~~~~~~~~~~~~~~ 303 (371)
++|++||++. .+++..+.+|...|.+++|+ +++|++++.|++|++||..... . ..+...+..+.+.++
T Consensus 129 ~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 208 (330)
T 2hes_X 129 KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKT 208 (330)
T ss_dssp SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCS
T ss_pred CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCC
Confidence 9999999943 35678889999999999998 6799999999999999976542 1 122234455555554
Q ss_pred --CCEEEEecCCCeEEEEEcCCc--------ceeeeec--CCceEEEEEeCCCCeEEeeCCCCcEEEEEcccc
Q 041206 304 --KPVLFSSGKDSAIRLYELPSF--------KLRARIF--SRREVEVDQIGPAGLFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 304 --~~~l~~~~~d~~i~iwd~~~~--------~~~~~~~--~~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~~~ 364 (371)
+.+|++++.|++|++||+... .....+. |...|.+++|++++.|++++.||.|++|+..++
T Consensus 209 ~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 209 EGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp SSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETT
T ss_pred CCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCC
Confidence 558999999999999998764 2333332 678999999998779999999999999998765
No 52
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.8e-35 Score=258.83 Aligned_cols=285 Identities=13% Similarity=0.171 Sum_probs=216.4
Q ss_pred EEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceee-EeeeCccCCeEEEEEcCC---CCE
Q 041206 35 EEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATL-MKLNGHKKAVTNVGLPSG---SNK 110 (371)
Q Consensus 35 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~l~~h~~~V~~~~~~~~---~~~ 110 (371)
...+++|...|.+++++|....+......+..++.+++|+. . ..+.. ....+|...|++++|+|+ +++
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~-------~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 82 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEI-------Q-HGDLKLLREIEKAKPIKCGTFGATSLQQRY 82 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEE-------C-SSSEEEEEEEEESSCEEEEECTTCCTTTCC
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeC-------C-CCcccceeeecccCcEEEEEEcCCCCCCce
Confidence 44568899999999999976432212111123889999993 2 23333 333479999999999998 699
Q ss_pred EEEEeCCCcEEEEECCCCc-eEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEE------eCC--EEEEE
Q 041206 111 LYSGSRDGRVSVWDRDSGR-CVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVV------NND--LLFAG 181 (371)
Q Consensus 111 l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~------~~~--~l~~~ 181 (371)
|++++.||.|++||+.+++ .+..+.. |...|.++.+ +++ +|+++
T Consensus 83 l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------------------~~~~v~~~~~~~~~~~s~~~~~l~~~ 135 (357)
T 3i2n_A 83 LATGDFGGNLHIWNLEAPEMPVYSVKG---------------------------HKEIINAIDGIGGLGIGEGAPEIVTG 135 (357)
T ss_dssp EEEEETTSCEEEECTTSCSSCSEEECC---------------------------CSSCEEEEEEESGGGCC-CCCEEEEE
T ss_pred EEEecCCCeEEEEeCCCCCccEEEEEe---------------------------cccceEEEeeccccccCCCccEEEEE
Confidence 9999999999999999887 5555543 4456888865 444 99999
Q ss_pred eCCCeEEEEeccCCCCcceeeEEEec---Cc--ceEEEE----ecCCce-eEecccceeeeeCCCeEEEEECCCceEEEE
Q 041206 182 SEGGVISVWKGTFVANPFKQVASIRA---PL--WFCSLS----SSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQT 251 (371)
Q Consensus 182 ~~dg~v~iwd~~~~~~~~~~~~~~~~---~~--~v~~~~----~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~ 251 (371)
+.||.|++||+.+... +...+.. +. .+.+++ |+|++. ++++ +.|+.|++||+++++....
T Consensus 136 ~~d~~i~vwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~-------~~d~~i~i~d~~~~~~~~~ 205 (357)
T 3i2n_A 136 SRDGTVKVWDPRQKDD---PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAG-------YDNGDIKLFDLRNMALRWE 205 (357)
T ss_dssp ETTSCEEEECTTSCSS---CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEE-------ETTSEEEEEETTTTEEEEE
T ss_pred eCCCeEEEEeCCCCCC---cceeccccCCCCCCceEEEEEEeccCCCCCEEEEE-------ccCCeEEEEECccCceeee
Confidence 9999999999998742 4444433 32 788888 778886 8888 9999999999999887554
Q ss_pred eecCCCcEEEEEEcC-----CeEEEEeCCCcEEEEEccCCCCc---------ceecceEEEEecCCCC-EEEEecCCCeE
Q 041206 252 LKGHSDTVTSLLFWD-----EYLFSSSLDETIKIWLYTHTKNN---------AELSSLFGMLDAEAKP-VLFSSGKDSAI 316 (371)
Q Consensus 252 ~~~~~~~v~~~~~~~-----~~l~s~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~~~~~~-~l~~~~~d~~i 316 (371)
..|...|.+++|++ ++|++++.||.|++||++..+.. .+...+..+.+.+++. ++++++.||.|
T Consensus 206 -~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 284 (357)
T 3i2n_A 206 -TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGL 284 (357)
T ss_dssp -EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred -cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcE
Confidence 56889999999974 79999999999999998765432 2334555566666655 89999999999
Q ss_pred EEEEcCCcc-------------------eeeeec-CCceEEEEEeCCCC-eEE-eeCCCCcEEEEEccccc
Q 041206 317 RLYELPSFK-------------------LRARIF-SRREVEVDQIGPAG-LFF-PGDASGSVGVWKWLLAE 365 (371)
Q Consensus 317 ~iwd~~~~~-------------------~~~~~~-~~~~v~~~~~s~~~-~l~-~~~~dg~i~iw~~~~~~ 365 (371)
++||++... .+..+. |..+|++++|+|++ .|+ +++.||.|++|++.+.+
T Consensus 285 ~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 285 HLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred EEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 999998643 333333 67899999999999 777 89999999999998654
No 53
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-35 Score=263.15 Aligned_cols=304 Identities=16% Similarity=0.189 Sum_probs=233.2
Q ss_pred cccCCCCceeeccCcccccceeEEEEEeeccceeeeeeeecce-eeccceeeCCccceEEEEEeccCCCCccCCce----
Q 041206 13 HKHSEGGETMMSDDDDLMKGRAEEREEMFGFGLAAMAIRVCNN-WISDSCVYGDKCRFLHSWVHSVDGDNTTNSLA---- 87 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---- 87 (371)
..+.++...+.. .++............|...|.+++++|... ++. .++.++.+++|+.... ...++
T Consensus 17 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~----~~~~dg~i~iw~~~~~----~~~~~~~~~ 87 (425)
T 1r5m_A 17 ETQEDDTNSIDS-SDDLDGFVKILKEIVKLDNIVSSTWNPLDESILA----YGEKNSVARLARIVET----DQEGKKYWK 87 (425)
T ss_dssp ------------------CCCEECEEEEECSCCSEEEECSSCTTEEE----EEETBTEEEEEEEEEC----------CEE
T ss_pred hcccCccccccc-cccchhhhhheeeeeccCceEEEEECCCCCcEEE----EecCCceEEEEEEecc----cCCcccccc
Confidence 334554443322 233333333444556779999999999765 433 3567889999994100 02222
Q ss_pred --eeEeeeC----------ccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecC
Q 041206 88 --TLMKLNG----------HKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLP 155 (371)
Q Consensus 88 --~~~~l~~----------h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (371)
....+.. |.+.|++++|+|++++|++++.||.|++|| .+++.+..+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~------------------- 147 (425)
T 1r5m_A 88 LTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNF------------------- 147 (425)
T ss_dssp EEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECC-------------------
T ss_pred ccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccC-------------------
Confidence 3344443 788999999999999999999999999999 66776666653
Q ss_pred CcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-c---------------eEEEEec
Q 041206 156 NAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-W---------------FCSLSSS 217 (371)
Q Consensus 156 ~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~---------------v~~~~~~ 217 (371)
|...|.+++|+|+ +|++++.|+.|++||+.++ +.+..+..+. . +.+++|+
T Consensus 148 --------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (425)
T 1r5m_A 148 --------HRAPIVSVKWNKDGTHIISMDVENVTILWNVISG----TVMQHFELKETGGSSINAENHSGDGSLGVDVEWV 215 (425)
T ss_dssp --------CCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT----EEEEEECCC---------------CCCBSCCEEE
T ss_pred --------CCccEEEEEECCCCCEEEEEecCCeEEEEECCCC----cEEEEeeccccCccceeeccccCCcceeeEEEEc
Confidence 4557999999988 8999999999999999988 7777787776 5 9999999
Q ss_pred CCceeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcc----e
Q 041206 218 NDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNA----E 291 (371)
Q Consensus 218 ~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~----~ 291 (371)
|++.++++ +.++.|++||+++++.+..+..|...|.+++|+ +++|++++.|+.|++||++..+... +
T Consensus 216 ~~~~~~~~-------~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 288 (425)
T 1r5m_A 216 DDDKFVIP-------GPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH 288 (425)
T ss_dssp ETTEEEEE-------CGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCC
T ss_pred CCCEEEEE-------cCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCC
Confidence 99889999 999999999999999999999999999999998 6799999999999999988765422 2
Q ss_pred ecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccc
Q 041206 292 LSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 292 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~ 365 (371)
...+..+.+.+++ ++++++.|+.|++||+++++.+..+. +...|.+++|+|++ +|++++.||.|++|++.+.+
T Consensus 289 ~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 289 SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp SSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred CccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 2345556666666 99999999999999999998888776 57899999999999 99999999999999998765
No 54
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.2e-35 Score=262.42 Aligned_cols=261 Identities=23% Similarity=0.343 Sum_probs=208.9
Q ss_pred cccCCCCceeeccCcc------cccceeEEEEEeecc------------------ceeeeeeeecceeeccceeeCCccc
Q 041206 13 HKHSEGGETMMSDDDD------LMKGRAEEREEMFGF------------------GLAAMAIRVCNNWISDSCVYGDKCR 68 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d------~~~~~~~~~~~~h~~------------------~v~~~~~~~~~~~~~~~~~~~~~~~ 68 (371)
-+|||||++||++.++ ...++.+..+..|.. .|.+++++|...++. .++.++
T Consensus 70 v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~----s~~~d~ 145 (393)
T 1erj_A 70 VKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA----TGAEDR 145 (393)
T ss_dssp EEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE----EEETTS
T ss_pred EEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE----EEcCCC
Confidence 4589999999998753 446777777766543 388899998766433 367789
Q ss_pred eEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCC
Q 041206 69 FLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGS 148 (371)
Q Consensus 69 ~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 148 (371)
.|++|+ ....+.+..+++|...|++++|+|++++|++++.|++|++||++++++...+....
T Consensus 146 ~i~iwd--------~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~---------- 207 (393)
T 1erj_A 146 LIRIWD--------IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED---------- 207 (393)
T ss_dssp CEEEEE--------TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS----------
T ss_pred eEEEEE--------CCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCC----------
Confidence 999999 45668889999999999999999999999999999999999999998877766433
Q ss_pred EEEEecCCcEEEEEeCCCCeeEEEEeC-C--EEEEEeCCCeEEEEeccCCCCcceeeEEE-------ecCc-ceEEEEec
Q 041206 149 WVFLGLPNAVKSWRVNAASVNALVVNN-D--LLFAGSEGGVISVWKGTFVANPFKQVASI-------RAPL-WFCSLSSS 217 (371)
Q Consensus 149 ~~~~~~~~~i~~~~~~~~~v~~~~~~~-~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-------~~~~-~v~~~~~~ 217 (371)
.+.+++++| + ++++|+.|+.|++||++++ ..+..+ .+|. .|.+++|+
T Consensus 208 ------------------~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~----~~~~~~~~~~~~~~~h~~~v~~v~~~ 265 (393)
T 1erj_A 208 ------------------GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG----FLVERLDSENESGTGHKDSVYSVVFT 265 (393)
T ss_dssp ------------------CEEEEEECSTTCCEEEEEETTSCEEEEETTTC----CEEEEEC------CCCSSCEEEEEEC
T ss_pred ------------------CcEEEEEECCCCCEEEEEcCCCcEEEEECCCC----cEEEeecccccCCCCCCCCEEEEEEC
Confidence 478889987 4 9999999999999999987 555554 5677 99999999
Q ss_pred CCce-eEecccceeeeeCCCeEEEEECCCc------------eEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEE
Q 041206 218 NDTR-WNSKEEAAVFEFCGHTTRTWNLDNL------------ECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWL 282 (371)
Q Consensus 218 ~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd 282 (371)
|+++ ++++ +.|+.|++||+++. .+...+.+|...|.+++|+ +.+|++++.|+.|++||
T Consensus 266 ~~g~~l~s~-------s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd 338 (393)
T 1erj_A 266 RDGQSVVSG-------SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 338 (393)
T ss_dssp TTSSEEEEE-------ETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEE
T ss_pred CCCCEEEEE-------eCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 9996 8999 99999999999753 3556788999999999998 67999999999999999
Q ss_pred ccCCCCc----ceecceEEEEecC------CCCEEEEecCCCeEEEEEcCCc
Q 041206 283 YTHTKNN----AELSSLFGMLDAE------AKPVLFSSGKDSAIRLYELPSF 324 (371)
Q Consensus 283 ~~~~~~~----~~~~~~~~~~~~~------~~~~l~~~~~d~~i~iwd~~~~ 324 (371)
++..+.. .+...+..+.+.+ ++.+|++|+.|++|++|++...
T Consensus 339 ~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 339 KKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 8876532 2223344444332 4568999999999999998653
No 55
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.4e-35 Score=257.50 Aligned_cols=248 Identities=17% Similarity=0.199 Sum_probs=195.3
Q ss_pred CceeeEeeeCccCCeEEEEE-----cC-CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcE
Q 041206 85 SLATLMKLNGHKKAVTNVGL-----PS-GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAV 158 (371)
Q Consensus 85 ~~~~~~~l~~h~~~V~~~~~-----~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (371)
..++...|+||.+.|++++| ++ ++++|+||+.|++|++||+.+++...... ...
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~--------------------~~~ 69 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFG--------------------IPH 69 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSE--------------------EEE
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccc--------------------ccc
Confidence 34677899999999999999 77 89999999999999999987543110000 001
Q ss_pred EEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeC
Q 041206 159 KSWRVNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFC 234 (371)
Q Consensus 159 ~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~ 234 (371)
..+..|...|.+++|+|+ ++++++.|+.|++||++++ +.+..+.+|. .|.+++|+|+++ ++++ +.
T Consensus 70 ~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~----~~~~~~~~h~~~v~~v~~sp~~~~l~s~-------~~ 138 (343)
T 2xzm_R 70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG----TTYKRFVGHQSEVYSVAFSPDNRQILSA-------GA 138 (343)
T ss_dssp EEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS----CEEEEEECCCSCEEEEEECSSTTEEEEE-------ET
T ss_pred chhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC----cEEEEEcCCCCcEEEEEECCCCCEEEEE-------cC
Confidence 122236668999999988 9999999999999999998 7888999999 999999999986 8999 99
Q ss_pred CCeEEEEECCCceEEEEee---cCCCcEEEEEEcC------------CeEEEEeCCCcEEEEEccCCCC---cceecceE
Q 041206 235 GHTTRTWNLDNLECVQTLK---GHSDTVTSLLFWD------------EYLFSSSLDETIKIWLYTHTKN---NAELSSLF 296 (371)
Q Consensus 235 dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~------------~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~ 296 (371)
|+.|++||+... ....+. .|...|.+++|++ .+|++++.|+.|++||...... ..+...+.
T Consensus 139 d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~ 217 (343)
T 2xzm_R 139 EREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVN 217 (343)
T ss_dssp TSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEE
T ss_pred CCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccce
Confidence 999999999843 333333 7889999999983 5899999999999999433211 12223456
Q ss_pred EEEecCCCCEEEEecCCCeEEEEEcCC-cceeeeecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccc
Q 041206 297 GMLDAEAKPVLFSSGKDSAIRLYELPS-FKLRARIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 297 ~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~ 365 (371)
.+.+.+++++|++++.|+.|++||+.. ......+.+...|.+++|+|++ +++ ++.|+.|++|++.+.+
T Consensus 218 ~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 218 HLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQS 287 (343)
T ss_dssp EEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCC
Confidence 666777777999999999999999944 4444445466789999999999 555 5568899999997654
No 56
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-35 Score=286.38 Aligned_cols=332 Identities=10% Similarity=0.015 Sum_probs=243.4
Q ss_pred ccCCCCceeeccCcc-------cccceeE-----------EEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEe
Q 041206 14 KHSEGGETMMSDDDD-------LMKGRAE-----------EREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVH 75 (371)
Q Consensus 14 ~~sp~g~~l~~~~~d-------~~~~~~~-----------~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 75 (371)
.|+|+|++++++..| +..+++. ..+.+|...|.+++++|...- ....+..++.+ +|+
T Consensus 105 ~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~---~l~~g~~dg~v-lWd- 179 (902)
T 2oaj_A 105 DTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG---TVLISYEYVTL-TYS- 179 (902)
T ss_dssp ECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEE---EEEEECSSCEE-EEE-
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCC---EEEEEeCCCcE-EEE-
Confidence 589999999999876 3344432 223678999999999995321 11235678889 999
Q ss_pred ccCCCCccCCceeeEeeeCc------------------cCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEE--Ee
Q 041206 76 SVDGDNTTNSLATLMKLNGH------------------KKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNV--IT 135 (371)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~h------------------~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--~~ 135 (371)
....+.++.+.+| ...|++++|+|++++|++|+.||+|++||+.+++++.. +.
T Consensus 180 -------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~ 252 (902)
T 2oaj_A 180 -------LVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVF 252 (902)
T ss_dssp -------TTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSS
T ss_pred -------CCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeec
Confidence 3445667777665 57899999999999999999999999999999987754 21
Q ss_pred -----------------CCCeeEEEee----c---CCEEEEe-cC-----CcEEEEEe----------------------
Q 041206 136 -----------------NGAEIGCLIS----E---GSWVFLG-LP-----NAVKSWRV---------------------- 163 (371)
Q Consensus 136 -----------------~~~~~~~~~~----~---~~~~~~~-~~-----~~i~~~~~---------------------- 163 (371)
+..++.++.+ + +.+++++ .+ ..+.+|++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~ 332 (902)
T 2oaj_A 253 ETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPK 332 (902)
T ss_dssp CSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCS
T ss_pred ccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCcc
Confidence 1235777765 2 1455555 33 37888883
Q ss_pred --------CCCCeeEEEEeC------------CEEEEEeCCCeEEEEeccCCCCcce-----------------------
Q 041206 164 --------NAASVNALVVNN------------DLLFAGSEGGVISVWKGTFVANPFK----------------------- 200 (371)
Q Consensus 164 --------~~~~v~~~~~~~------------~~l~~~~~dg~v~iwd~~~~~~~~~----------------------- 200 (371)
+...|.++.+.+ ..+++++.||.|++||+.++.....
T Consensus 333 ~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~ 412 (902)
T 2oaj_A 333 QMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASV 412 (902)
T ss_dssp EEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEE
T ss_pred ceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEc
Confidence 234677777643 1688889999999999865521000
Q ss_pred --------------eeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEE----EE--ee-----
Q 041206 201 --------------QVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECV----QT--LK----- 253 (371)
Q Consensus 201 --------------~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~----~~--~~----- 253 (371)
....+.+|. .+.+++|+|+++ +++| +.|++|++||+.+++.. .. +.
T Consensus 413 ~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSg-------s~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~ 485 (902)
T 2oaj_A 413 PNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITG-------HSNGSVRIYDASHGDIQDNASFEVNLSRTLNK 485 (902)
T ss_dssp EHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEE-------ETTSEEEEEESSCCTTTTTBCEEEEHHHHTTC
T ss_pred CHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEe-------cCCCcEEEEECCCccccCCceEEeechhhcCC
Confidence 001123444 556667788886 8888 99999999999876421 11 11
Q ss_pred cCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC-------------------------------------------
Q 041206 254 GHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN------------------------------------------- 288 (371)
Q Consensus 254 ~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~------------------------------------------- 288 (371)
+|...|.+++|+ +++|++|+.||+|++||+...+.
T Consensus 486 ~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 565 (902)
T 2oaj_A 486 AKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF 565 (902)
T ss_dssp SSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred CCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence 789999999999 68999999999999999875521
Q ss_pred ------cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceee-----ee--cCCceEEEEEeC-----CCC----e
Q 041206 289 ------NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRA-----RI--FSRREVEVDQIG-----PAG----L 346 (371)
Q Consensus 289 ------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-----~~--~~~~~v~~~~~s-----~~~----~ 346 (371)
..+...+..+.+++++ +|++|+.|++|++||+++...+. .+ .|...|++++|+ ||| +
T Consensus 566 ~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~ 644 (902)
T 2oaj_A 566 MPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSIL 644 (902)
T ss_dssp EEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEE
T ss_pred ceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceE
Confidence 1123456667777888 99999999999999998876653 22 356789999999 884 9
Q ss_pred EEeeCCCCcEEEEEc---cccc
Q 041206 347 FFPGDASGSVGVWKW---LLAE 365 (371)
Q Consensus 347 l~~~~~dg~i~iw~~---~~~~ 365 (371)
|++|+.|++|++||+ .+++
T Consensus 645 l~sgs~D~tv~~wd~~p~~~g~ 666 (902)
T 2oaj_A 645 MVCGTDMGEVITYKILPASGGK 666 (902)
T ss_dssp EEEEETTSEEEEEEEEECGGGC
T ss_pred EEEEecCCcEEEEEEecCCCCc
Confidence 999999999999999 5544
No 57
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.4e-35 Score=264.27 Aligned_cols=276 Identities=14% Similarity=0.171 Sum_probs=220.8
Q ss_pred cccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCC
Q 041206 29 LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGS 108 (371)
Q Consensus 29 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~ 108 (371)
.....+...+.+|...|.+++++|...++ ++++.|+.+++|+ ....+....+++|...|.+++|+|++
T Consensus 53 ~~~~~~~~~l~gH~~~V~~~~~sp~~~~l----~s~s~D~~v~iWd--------~~~~~~~~~~~~h~~~v~~~~~s~~g 120 (380)
T 3iz6_a 53 PTDLVCCRTLQGHSGKVYSLDWTPEKNWI----VSASQDGRLIVWN--------ALTSQKTHAIKLHCPWVMECAFAPNG 120 (380)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECTTSSCE----EEEETTSEEEEEE--------TTTTEEEEEEECCCTTCCCCEECTTS
T ss_pred cceeEEeecccccccEEEEEEEcCCCCEE----EEEeCCCeEEEEE--------CCCCccceEEecCCCCEEEEEECCCC
Confidence 34566788899999999999999976543 3467899999999 45668889999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCc-------eEEEEeC-CCeeEEEee--c-CC-EEEEecCCcEEEEEeCCC----------
Q 041206 109 NKLYSGSRDGRVSVWDRDSGR-------CVNVITN-GAEIGCLIS--E-GS-WVFLGLPNAVKSWRVNAA---------- 166 (371)
Q Consensus 109 ~~l~s~~~dg~v~iwd~~~~~-------~~~~~~~-~~~~~~~~~--~-~~-~~~~~~~~~i~~~~~~~~---------- 166 (371)
++|++|+.|+.+++||+.+.. ....+.. ...+.++.+ + +. ++.++.|+.|++||+.++
T Consensus 121 ~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~ 200 (380)
T 3iz6_a 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF 200 (380)
T ss_dssp SEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS
T ss_pred CEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc
Confidence 999999999999999987542 1222222 233444433 2 34 444467999999997543
Q ss_pred ------CeeEEEEeC-C--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCC
Q 041206 167 ------SVNALVVNN-D--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCG 235 (371)
Q Consensus 167 ------~v~~~~~~~-~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~d 235 (371)
.|.++++++ + ++++|+.|+.|++||++... +.+..+.+|. .|.+++|+|++. ++++ +.|
T Consensus 201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~---~~~~~~~~h~~~v~~v~~~p~~~~l~s~-------s~D 270 (380)
T 3iz6_a 201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS---RAVRTYHGHEGDINSVKFFPDGQRFGTG-------SDD 270 (380)
T ss_dssp SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC---CCCEEECCCSSCCCEEEECTTSSEEEEE-------CSS
T ss_pred CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC---cceEEECCcCCCeEEEEEecCCCeEEEE-------cCC
Confidence 678888865 2 99999999999999998442 5677889999 999999999986 8999 999
Q ss_pred CeEEEEECCCceEEEEeecCCC-------cEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC--------cceecceEEE
Q 041206 236 HTTRTWNLDNLECVQTLKGHSD-------TVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN--------NAELSSLFGM 298 (371)
Q Consensus 236 g~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~~ 298 (371)
++|++||+++++.+..+..+.. .|.+++|+ +++|++++.||.|++||+...+. ..+...+..+
T Consensus 271 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l 350 (380)
T 3iz6_a 271 GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL 350 (380)
T ss_dssp SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEE
T ss_pred CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEE
Confidence 9999999999999888765432 48999998 78999999999999999765442 2233455666
Q ss_pred EecCCCCEEEEecCCCeEEEEEcCCcce
Q 041206 299 LDAEAKPVLFSSGKDSAIRLYELPSFKL 326 (371)
Q Consensus 299 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 326 (371)
.+.+++.+|++|+.|++|++|++...+.
T Consensus 351 ~~s~dg~~l~sgs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 351 GLSSDGSALCTGSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp EECSSSSEEEEECTTSCEEEEECCSSSS
T ss_pred EECCCCCEEEEeeCCCCEEEEecCCCcc
Confidence 6677777999999999999999987653
No 58
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.2e-34 Score=248.96 Aligned_cols=269 Identities=19% Similarity=0.241 Sum_probs=215.1
Q ss_pred eeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEee--eCccCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 041206 46 AAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKL--NGHKKAVTNVGLPSGSNKLYSGSRDGRVSVW 123 (371)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l--~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iw 123 (371)
.++++++.+. ++ .+.++.|++|+ ..++++++.+ .+|...|++++|+|++++|++|+.||+|++|
T Consensus 29 ~~l~WS~~~~-lA-----vg~D~tV~iWd--------~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw 94 (318)
T 4ggc_A 29 NLVDWSSGNV-LA-----VALDNSVYLWS--------ASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 94 (318)
T ss_dssp BCEEECTTSE-EE-----EEETTEEEEEE--------TTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eEEEECCCCE-EE-----EEeCCEEEEEE--------CCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEe
Confidence 5678887653 32 23578999999 4456666655 4788899999999999999999999999999
Q ss_pred ECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCCEEEEEeCCCeEEEEeccCCCCcceeeE
Q 041206 124 DRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNNDLLFAGSEGGVISVWKGTFVANPFKQVA 203 (371)
Q Consensus 124 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 203 (371)
|+++++++..+.. |...+.++.+.+..+++++.++.+++|+..... ..+.
T Consensus 95 ~~~~~~~~~~~~~---------------------------h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~---~~~~ 144 (318)
T 4ggc_A 95 DVQQQKRLRNMTS---------------------------HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAE---HHVA 144 (318)
T ss_dssp ETTTTEEEEEEEC---------------------------CSSCEEEEEEETTEEEEEETTSEEEEEETTSSS---CEEE
T ss_pred ecCCceeEEEecC---------------------------ccceEEEeecCCCEEEEEecCCceEeeecCCCc---eeEE
Confidence 9999998887765 444678888888899999999999999988764 5667
Q ss_pred EEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceE----EEEeecCCCcEEEEEEc---CCe--EEEE
Q 041206 204 SIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLEC----VQTLKGHSDTVTSLLFW---DEY--LFSS 272 (371)
Q Consensus 204 ~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~---~~~--l~s~ 272 (371)
.+.+|. .+..+.+.+++. ++++ +.|+.|++||+++++. ......|.+.|.++.+. ++. ++++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~s~-------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 217 (318)
T 4ggc_A 145 TLSGHSQEVCGLRWAPDGRHLASG-------GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 217 (318)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEE-------ETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEEC
T ss_pred EEcCccCceEEEEEcCCCCEEEEE-------ecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEec
Confidence 788888 999999999986 8899 9999999999987653 34556788899999998 333 3567
Q ss_pred eCCCcEEEEEccCCCCccee---cceEEEEecCCCCEEEE--ecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-
Q 041206 273 SLDETIKIWLYTHTKNNAEL---SSLFGMLDAEAKPVLFS--SGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG- 345 (371)
Q Consensus 273 ~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~- 345 (371)
+.++.|++||.+........ ..+....+.+.+..+++ ++.|+.|++||+++++++..+. |.+.|++++|+|++
T Consensus 218 ~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~ 297 (318)
T 4ggc_A 218 TSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGA 297 (318)
T ss_dssp TTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred CCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence 78999999998776542111 22333333344445544 4579999999999999999887 68899999999999
Q ss_pred eEEeeCCCCcEEEEEccccc
Q 041206 346 LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 346 ~l~~~~~dg~i~iw~~~~~~ 365 (371)
+|++|+.||+|+|||+.+..
T Consensus 298 ~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 298 TVASAAADETLRLWRCFELD 317 (318)
T ss_dssp CEEEEETTTEEEEECCSCCC
T ss_pred EEEEEecCCeEEEEECCCCC
Confidence 99999999999999997643
No 59
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.9e-35 Score=262.79 Aligned_cols=289 Identities=15% Similarity=0.178 Sum_probs=229.3
Q ss_pred cccceeEEEEEeeccceeeeeeee-cceeeccceeeCCccceEEEEEeccCCCCccCCceeeEee-------------eC
Q 041206 29 LMKGRAEEREEMFGFGLAAMAIRV-CNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKL-------------NG 94 (371)
Q Consensus 29 ~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l-------------~~ 94 (371)
...++....+.+|.+.|.+++++| ...++. .++.++.+++|+... .+....+ .+
T Consensus 30 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~----~~~~dg~i~iw~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 97 (408)
T 4a11_B 30 LELNKDRDVERIHGGGINTLDIEPVEGRYML----SGGSDGVIVLYDLEN--------SSRQSYYTCKAVCSIGRDHPDV 97 (408)
T ss_dssp EEECTTEEECCCCSSCEEEEEECTTTCCEEE----EEETTSCEEEEECCC--------CSSSSCEEECEEEEECTTCTTC
T ss_pred cccCcceeeeeccCCcEEEEEEecCCCCEEE----EEcCCCeEEEEECCC--------CcccceEecccccccccccccc
Confidence 344566777889999999999999 655433 256788999999432 2222222 36
Q ss_pred ccCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEE
Q 041206 95 HKKAVTNVGLPS-GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVV 173 (371)
Q Consensus 95 h~~~V~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~ 173 (371)
|...|++++|+| ++++|++++.||.|++||+.+++....+.... .+.++.+
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----------------------------~~~~~~~ 149 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEE----------------------------TVYSHHM 149 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSS----------------------------CEEEEEE
T ss_pred CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCC----------------------------ceeeeEe
Confidence 999999999999 78899999999999999999999888777544 3677777
Q ss_pred eCC-----EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce--eEecccceeeeeCCCeEEEEECCC
Q 041206 174 NND-----LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR--WNSKEEAAVFEFCGHTTRTWNLDN 245 (371)
Q Consensus 174 ~~~-----~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~iwd~~~ 245 (371)
.+. ++++++.+|.|++||+.++ +.+..+..|. .|.+++|+|++. ++++ +.||.|++||+++
T Consensus 150 ~~~~~~~~~~~~~~~~~~v~~~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~ll~~~-------~~dg~i~i~d~~~ 218 (408)
T 4a11_B 150 SPVSTKHCLVAVGTRGPKVQLCDLKSG----SCSHILQGHRQEILAVSWSPRYDYILATA-------SADSRVKLWDVRR 218 (408)
T ss_dssp CSSCSSCCEEEEEESSSSEEEEESSSS----CCCEEECCCCSCEEEEEECSSCTTEEEEE-------ETTSCEEEEETTC
T ss_pred ecCCCCCcEEEEEcCCCeEEEEeCCCc----ceeeeecCCCCcEEEEEECCCCCcEEEEE-------cCCCcEEEEECCC
Confidence 653 8999999999999999988 7788888898 999999999985 7788 9999999999987
Q ss_pred ce-EEEEe---------------ecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcce---------ecceEEE
Q 041206 246 LE-CVQTL---------------KGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAE---------LSSLFGM 298 (371)
Q Consensus 246 ~~-~~~~~---------------~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~---------~~~~~~~ 298 (371)
++ ++..+ ..|...|.+++|+ +++|++++.|+.|++||+...+.... .......
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (408)
T 4a11_B 219 ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFT 298 (408)
T ss_dssp SSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCE
T ss_pred CCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeE
Confidence 65 33443 5788999999998 67999999999999999887653211 1112222
Q ss_pred EecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccceec
Q 041206 299 LDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 299 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
........+++++.++.|++||+.+++++..+. |...|++++|+|++ +|++++.||.|++|++.+.+...
T Consensus 299 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 299 VSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp ECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----
T ss_pred EecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccC
Confidence 333334467777889999999999999998887 68899999999999 99999999999999998876543
No 60
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=7e-35 Score=264.56 Aligned_cols=272 Identities=19% Similarity=0.268 Sum_probs=219.3
Q ss_pred EeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCC
Q 041206 39 EMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDG 118 (371)
Q Consensus 39 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg 118 (371)
.+|...|.++++.. +. ...++.++.|++|+ ..+++.+..+.+|.+.|++++| ++++|++|+.||
T Consensus 130 ~~~~~~v~~~~~d~-~~-----l~~g~~dg~i~iwd--------~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg 193 (435)
T 1p22_A 130 SETSKGVYCLQYDD-QK-----IVSGLRDNTIKIWD--------KNTLECKRILTGHTGSVLCLQY--DERVIITGSSDS 193 (435)
T ss_dssp CSSCCCEEEEECCS-SE-----EEEEESSSCEEEEE--------SSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTS
T ss_pred cCCCCcEEEEEECC-CE-----EEEEeCCCeEEEEe--------CCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCC
Confidence 45666788777632 22 23367888999999 4567888999999999999999 688999999999
Q ss_pred cEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCCEEEEEeCCCeEEEEeccCCCCc
Q 041206 119 RVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNNDLLFAGSEGGVISVWKGTFVANP 198 (371)
Q Consensus 119 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 198 (371)
+|++||+.+++.+..+.. |...|.+++++++.+++|+.||.|++||+.++...
T Consensus 194 ~i~vwd~~~~~~~~~~~~---------------------------h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~ 246 (435)
T 1p22_A 194 TVRVWDVNTGEMLNTLIH---------------------------HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI 246 (435)
T ss_dssp CEEEEESSSCCEEEEECC---------------------------CCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCC
T ss_pred eEEEEECCCCcEEEEEcC---------------------------CCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCc
Confidence 999999999988877764 44569999999999999999999999999887321
Q ss_pred ceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEcCCeEEEEeCCCc
Q 041206 199 FKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDEYLFSSSLDET 277 (371)
Q Consensus 199 ~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~ 277 (371)
.....+.+|. .|.++++.. ..++++ +.||.|++||+++++++..+.+|...|.++.++++++++++.||.
T Consensus 247 -~~~~~~~~~~~~v~~~~~~~-~~l~s~-------~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~ 317 (435)
T 1p22_A 247 -TLRRVLVGHRAAVNVVDFDD-KYIVSA-------SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNT 317 (435)
T ss_dssp -EEEEEECCCSSCEEEEEEET-TEEEEE-------ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSC
T ss_pred -eeeeEecCCCCcEEEEEeCC-CEEEEE-------eCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCe
Confidence 2336777888 999999932 358899 999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCCcc----eecceEEEEecCCCCEEEEecCCCeEEEEEcCCcc---------eeeeec-CCceEEEEEeCC
Q 041206 278 IKIWLYTHTKNNA----ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFK---------LRARIF-SRREVEVDQIGP 343 (371)
Q Consensus 278 i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---------~~~~~~-~~~~v~~~~~s~ 343 (371)
|++||++..+... +...+..+.+ ++.+|++|+.||.|++||+.++. .+..+. |...|.+++|
T Consensus 318 i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-- 393 (435)
T 1p22_A 318 IRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF-- 393 (435)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--
T ss_pred EEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--
Confidence 9999998765322 2233444444 45599999999999999998765 555555 6789999999
Q ss_pred CC-eEEeeCCCCcEEEEEccccce
Q 041206 344 AG-LFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 344 ~~-~l~~~~~dg~i~iw~~~~~~~ 366 (371)
++ .|++|+.||.|++||+.+...
T Consensus 394 ~~~~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 394 DEFQIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp CSSCEEECCSSSEEEEEC------
T ss_pred CCCEEEEEeCCCEEEEEECCCCCC
Confidence 56 999999999999999987643
No 61
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.9e-34 Score=259.75 Aligned_cols=266 Identities=20% Similarity=0.347 Sum_probs=225.3
Q ss_pred ceeeEeeeCccCCe-EEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC-CCeeEEEeecCCEEEE-ecCCcEEEEE
Q 041206 86 LATLMKLNGHKKAV-TNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN-GAEIGCLISEGSWVFL-GLPNAVKSWR 162 (371)
Q Consensus 86 ~~~~~~l~~h~~~V-~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~i~~~~ 162 (371)
.+....+++|.+.| .++ ++++++|++|+.||+|++||+.+++.+..+.. ...+.++.+.+.++++ +.|+.|++||
T Consensus 108 ~~~~~~l~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 108 LKSPKVLKGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWN 185 (445)
T ss_dssp CCCCEEEECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred cceeEEecccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEE
Confidence 44567899999975 554 45689999999999999999999999988875 4668888888887776 5689999999
Q ss_pred eCCC-----------CeeEEEEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEeccccee
Q 041206 163 VNAA-----------SVNALVVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAV 230 (371)
Q Consensus 163 ~~~~-----------~v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~ 230 (371)
+.++ .|.++.++++.+++++.||.|++||+.++ +.+..+..|. .+.++++. ...++++
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~----~~~~~~~~~~~~v~~~~~~-~~~l~~~----- 255 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG----QCLHVLMGHVAAVRCVQYD-GRRVVSG----- 255 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSC----CEEEEEECCSSCEEEEEEC-SSCEEEE-----
T ss_pred CCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCC----cEEEEEcCCcccEEEEEEC-CCEEEEE-----
Confidence 8655 79999999999999999999999999988 7888899999 99999992 2358899
Q ss_pred eeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCCcce----ecceEEEEecCCCCE
Q 041206 231 FEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKNNAE----LSSLFGMLDAEAKPV 306 (371)
Q Consensus 231 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~ 306 (371)
+.|+.|++||+++++++..+.+|...|.++.|+++++++++.|+.|++||++..+.... ...+..+.. . +.+
T Consensus 256 --~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~-~-~~~ 331 (445)
T 2ovr_B 256 --AYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL-K-DNI 331 (445)
T ss_dssp --ETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE-E-TTE
T ss_pred --cCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE-e-CCE
Confidence 99999999999999999999999999999999999999999999999999887664221 122332222 2 348
Q ss_pred EEEecCCCeEEEEEcCCcceeeeec----CCceEEEEEeCCCCeEEeeCCCCcEEEEEccccceec
Q 041206 307 LFSSGKDSAIRLYELPSFKLRARIF----SRREVEVDQIGPAGLFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 307 l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
+++++.||.|++||+++++.+..+. +...|.+++|+++ +|++|+.||.|++||+.+++..+
T Consensus 332 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~ 396 (445)
T 2ovr_B 332 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN-FVITSSDDGTVKLWDLKTGEFIR 396 (445)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCC-EEEEEeCCCeEEEEECCCCceee
Confidence 9999999999999999999888876 5778999999643 99999999999999998876543
No 62
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.1e-34 Score=257.34 Aligned_cols=282 Identities=15% Similarity=0.090 Sum_probs=224.1
Q ss_pred EEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCce--eeEeeeCccCCeEEEEEcCCCCEEEEEe
Q 041206 38 EEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLA--TLMKLNGHKKAVTNVGLPSGSNKLYSGS 115 (371)
Q Consensus 38 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~l~~h~~~V~~~~~~~~~~~l~s~~ 115 (371)
+..|...|.+++++|...++. .++.++.+++|+. ...+ .+..+.+|...|++++|+|++++|++++
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~----~~~~d~~v~i~~~--------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 71 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIA----ICPNNHEVHIYEK--------SGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG 71 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEE----EECSSSEEEEEEE--------ETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEE----EEeCCCEEEEEeC--------CCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEc
Confidence 456999999999999766543 3567889999993 2333 8899999999999999999999999999
Q ss_pred CCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEecc
Q 041206 116 RDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVWKGT 193 (371)
Q Consensus 116 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~ 193 (371)
.||.|++||+.+++....+... .+...|.+++|+|+ ++++++.|+.|++||+.
T Consensus 72 ~dg~i~vwd~~~~~~~~~~~~~-------------------------~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~ 126 (372)
T 1k8k_C 72 TDRNAYVWTLKGRTWKPTLVIL-------------------------RINRAARCVRWAPNEKKFAVGSGSRVISICYFE 126 (372)
T ss_dssp TTSCEEEEEEETTEEEEEEECC-------------------------CCSSCEEEEEECTTSSEEEEEETTSSEEEEEEE
T ss_pred CCCeEEEEECCCCeeeeeEEee-------------------------cCCCceeEEEECCCCCEEEEEeCCCEEEEEEec
Confidence 9999999999888765544321 13456999999988 99999999999999999
Q ss_pred CCCCcceeeEEE-ecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEEC------------------CCceEEEEe
Q 041206 194 FVANPFKQVASI-RAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNL------------------DNLECVQTL 252 (371)
Q Consensus 194 ~~~~~~~~~~~~-~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~------------------~~~~~~~~~ 252 (371)
..... .....+ ..|. .|.+++|+|++. ++++ +.|+.|++||+ ..++++..+
T Consensus 127 ~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-------~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (372)
T 1k8k_C 127 QENDW-WVCKHIKKPIRSTVLSLDWHPNSVLLAAG-------SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES 198 (372)
T ss_dssp TTTTE-EEEEEECTTCCSCEEEEEECTTSSEEEEE-------ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred CCCcc-eeeeeeecccCCCeeEEEEcCCCCEEEEE-------cCCCCEEEEEcccccccccccccccccccchhhheEec
Confidence 87321 123333 4567 999999999986 8888 99999999995 467888999
Q ss_pred ecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcce----ecceEEEEecCCCCEEEEecCCCeEEEEEcCC--c
Q 041206 253 KGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAE----LSSLFGMLDAEAKPVLFSSGKDSAIRLYELPS--F 324 (371)
Q Consensus 253 ~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~ 324 (371)
..|...|.+++|+ +++|++++.|+.|++||++..+.... ...+..+.+.+++.+++++ .|+.|++|++.+ +
T Consensus 199 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~ 277 (372)
T 1k8k_C 199 SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAG 277 (372)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTT
T ss_pred CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCc
Confidence 9999999999998 67999999999999999987664221 1244555555566577766 899999999987 3
Q ss_pred c--ee------------------------------------eee--cCCceEEEEEeC-CC----CeEEeeCCCCcEEEE
Q 041206 325 K--LR------------------------------------ARI--FSRREVEVDQIG-PA----GLFFPGDASGSVGVW 359 (371)
Q Consensus 325 ~--~~------------------------------------~~~--~~~~~v~~~~~s-~~----~~l~~~~~dg~i~iw 359 (371)
+ .+ ..+ .|..+|++++|+ ++ .+|++|+.||.|++|
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W 357 (372)
T 1k8k_C 278 KLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 357 (372)
T ss_dssp EEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEE
T ss_pred eEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEE
Confidence 2 00 222 367899999966 66 399999999999999
Q ss_pred Eccccc
Q 041206 360 KWLLAE 365 (371)
Q Consensus 360 ~~~~~~ 365 (371)
++.+.+
T Consensus 358 ~~~~~~ 363 (372)
T 1k8k_C 358 DVRSLE 363 (372)
T ss_dssp EHHHHH
T ss_pred EecChh
Confidence 998754
No 63
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.3e-35 Score=256.26 Aligned_cols=237 Identities=11% Similarity=0.068 Sum_probs=185.6
Q ss_pred EeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--EEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCC
Q 041206 90 MKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRC--VNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAAS 167 (371)
Q Consensus 90 ~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 167 (371)
..+.+|.+.|++++|+|++++||+|+.|++|+|||+.+++. +..+. -|.+.
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~---------------------------gH~~~ 59 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLR---------------------------GHEGP 59 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEE---------------------------CCSSC
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEc---------------------------CCCcc
Confidence 35679999999999999999999999999999999987753 33333 36668
Q ss_pred eeEEEEeC----CEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCC--ce-eEecccceeeeeCCCeEE
Q 041206 168 VNALVVNN----DLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSND--TR-WNSKEEAAVFEFCGHTTR 239 (371)
Q Consensus 168 v~~~~~~~----~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~--~~-l~~~~~~~~~~~~dg~i~ 239 (371)
|.+++|++ ++|++|+.|+.|++||++++.. +....+.+|. .|.+++|+|+ +. ++++ +.|+.|+
T Consensus 60 V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~--~~~~~~~~h~~~V~~v~~~p~~~g~~lasg-------s~D~~i~ 130 (316)
T 3bg1_A 60 VWQVAWAHPMYGNILASCSYDRKVIIWREENGTW--EKSHEHAGHDSSVNSVCWAPHDYGLILACG-------SSDGAIS 130 (316)
T ss_dssp EEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC--CEEEEECCCSSCCCEEEECCTTTCSCEEEE-------CSSSCEE
T ss_pred EEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc--eEEEEccCCCCceEEEEECCCCCCcEEEEE-------cCCCCEE
Confidence 99999974 3999999999999999987621 3556778898 9999999997 54 8899 9999999
Q ss_pred EEECCCce---EEEEeecCCCcEEEEEEcC-------------------CeEEEEeCCCcEEEEEccCCC-------Ccc
Q 041206 240 TWNLDNLE---CVQTLKGHSDTVTSLLFWD-------------------EYLFSSSLDETIKIWLYTHTK-------NNA 290 (371)
Q Consensus 240 iwd~~~~~---~~~~~~~~~~~v~~~~~~~-------------------~~l~s~~~dg~i~iwd~~~~~-------~~~ 290 (371)
+||++++. ....+.+|...|.+++|++ ++|++++.|++|++||++... ...
T Consensus 131 lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~ 210 (316)
T 3bg1_A 131 LLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA 210 (316)
T ss_dssp EEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBC
T ss_pred EEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeeccc
Confidence 99998753 2456678999999999984 489999999999999986432 122
Q ss_pred eecceEEEEecCCC----CEEEEecCCCeEEEEEcCCcc---e-eeee-cCCceEEEEEeCCCC-eEEeeCCCCcEEEEE
Q 041206 291 ELSSLFGMLDAEAK----PVLFSSGKDSAIRLYELPSFK---L-RARI-FSRREVEVDQIGPAG-LFFPGDASGSVGVWK 360 (371)
Q Consensus 291 ~~~~~~~~~~~~~~----~~l~~~~~d~~i~iwd~~~~~---~-~~~~-~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~ 360 (371)
+...+..+.+.+++ .+|++++.|++|++||+.+.. . ...+ .+...|.+++|+|++ +|++++.||.|++|+
T Consensus 211 h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 211 HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp CSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred CCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 33345666665543 689999999999999987631 1 1112 257899999999999 999999999999999
Q ss_pred cc
Q 041206 361 WL 362 (371)
Q Consensus 361 ~~ 362 (371)
..
T Consensus 291 ~~ 292 (316)
T 3bg1_A 291 ES 292 (316)
T ss_dssp EC
T ss_pred EC
Confidence 86
No 64
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.3e-33 Score=249.06 Aligned_cols=266 Identities=13% Similarity=0.087 Sum_probs=218.5
Q ss_pred ceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEE
Q 041206 32 GRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKL 111 (371)
Q Consensus 32 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 111 (371)
.+....+++|...|.+++++|.+.++ ++++.|+.+++|+ ....+....+..|...|.+++|+|++++|
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l----~s~s~Dg~v~vWd--------~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 121 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRI----VSSSQDGKVIVWD--------SFTTNKEHAVTMPCTWVMACAYAPSGCAI 121 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEE----EEEETTSEEEEEE--------TTTCCEEEEEECSSSCCCEEEECTTSSEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEE----EEEeCCCeEEEEE--------CCCCCcceEEecCCCCEEEEEECCCCCEE
Confidence 45678899999999999999976543 3478899999999 34567788899999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCc------eEEEE-eCCCeeEEEee--cCCEEEE-ecCCcEEEEEeCCC-----------CeeE
Q 041206 112 YSGSRDGRVSVWDRDSGR------CVNVI-TNGAEIGCLIS--EGSWVFL-GLPNAVKSWRVNAA-----------SVNA 170 (371)
Q Consensus 112 ~s~~~dg~v~iwd~~~~~------~~~~~-~~~~~~~~~~~--~~~~~~~-~~~~~i~~~~~~~~-----------~v~~ 170 (371)
++|+.|+.+++|++.... ....+ .+...+.++.+ ++..+++ +.|+.|++||+.++ .|.+
T Consensus 122 asg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~ 201 (354)
T 2pbi_B 122 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLC 201 (354)
T ss_dssp EEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred EEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEE
Confidence 999999999999986542 22223 24455666654 4555555 67999999998655 6788
Q ss_pred EEEeCC----EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECC
Q 041206 171 LVVNND----LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLD 244 (371)
Q Consensus 171 ~~~~~~----~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~ 244 (371)
+++.|. ++++|+.||.|++||++++ +++..+..|. .|.+++|+|++. ++++ +.|++|++||++
T Consensus 202 ~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~----~~~~~~~~h~~~v~~v~~~p~~~~l~s~-------s~D~~v~lwd~~ 270 (354)
T 2pbi_B 202 LDLAPSETGNTFVSGGCDKKAMVWDMRSG----QCVQAFETHESDVNSVRYYPSGDAFASG-------SDDATCRLYDLR 270 (354)
T ss_dssp EEECCCSSCCEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEEEEE-------ETTSCEEEEETT
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCC----cEEEEecCCCCCeEEEEEeCCCCEEEEE-------eCCCeEEEEECC
Confidence 888762 8999999999999999998 7888999999 999999999986 8999 999999999999
Q ss_pred CceEEEEeecC--CCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC----cceecceEEEEecCCCCEEEEecCCCeE
Q 041206 245 NLECVQTLKGH--SDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN----NAELSSLFGMLDAEAKPVLFSSGKDSAI 316 (371)
Q Consensus 245 ~~~~~~~~~~~--~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~d~~i 316 (371)
+++.+..+..+ ...+.+++|+ +.+|++++.|+.|++||+..... ..+...+..+.+.+++.+|++|+.|++|
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v 350 (354)
T 2pbi_B 271 ADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTL 350 (354)
T ss_dssp TTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred CCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCE
Confidence 98887766543 3478999998 78999999999999999876553 2233456666777777799999999999
Q ss_pred EEEE
Q 041206 317 RLYE 320 (371)
Q Consensus 317 ~iwd 320 (371)
++|+
T Consensus 351 ~vW~ 354 (354)
T 2pbi_B 351 RVWA 354 (354)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9996
No 65
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=8.5e-34 Score=248.09 Aligned_cols=282 Identities=15% Similarity=0.199 Sum_probs=224.4
Q ss_pred eeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCc
Q 041206 40 MFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGR 119 (371)
Q Consensus 40 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~ 119 (371)
.|...|.+++++|.+.++..... ...+..|. .....+.+ ...+|...|++++|+|++++|++++ ||.
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~----~~~~~~~~-------~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~~~~-dg~ 73 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFP----PDALIGPG-------IPRHARQI-NTLNHGEVVCAVTISNPTRHVYTGG-KGC 73 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCC----TTSSSSTT-------CCSEEEEE-EEECCSSCCCEEEECSSSSEEEEEC-BSE
T ss_pred ccCCceeEEEECCCCCEEEeecC----CCcEeccc-------cCCccccc-eeccCCCceEEEEEecCCcEEEEcC-CCe
Confidence 46778899999998887653221 11222222 22333333 4457999999999999999999999 999
Q ss_pred EEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEE--eCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCC
Q 041206 120 VSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWR--VNAASVNALVVNND--LLFAGSEGGVISVWKGTFV 195 (371)
Q Consensus 120 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~ 195 (371)
|++||+.+++....+.. +. .+...|.+++|+|+ ++++++.||.|++||+.++
T Consensus 74 i~iw~~~~~~~~~~~~~------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 129 (337)
T 1gxr_A 74 VKVWDISHPGNKSPVSQ------------------------LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP 129 (337)
T ss_dssp EEEEETTSTTCCSCSEE------------------------EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC
T ss_pred EEEEECCCCCceeeeec------------------------ccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence 99999987753322110 01 14457999999988 8999999999999999887
Q ss_pred CCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEE
Q 041206 196 ANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFS 271 (371)
Q Consensus 196 ~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s 271 (371)
.. .....+..|. .+.+++|+|++. ++++ +.|+.|++||+++++.+..+..|...|.+++|+ +++|++
T Consensus 130 ~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~-------~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 200 (337)
T 1gxr_A 130 TP--RIKAELTSSAPACYALAISPDSKVCFSC-------CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT 200 (337)
T ss_dssp ----EEEEEEECSSSCEEEEEECTTSSEEEEE-------ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred Cc--ceeeecccCCCceEEEEECCCCCEEEEE-------eCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEE
Confidence 31 3566778888 999999999986 8888 999999999999999999999999999999998 679999
Q ss_pred EeCCCcEEEEEccCCCCcce---ecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eE
Q 041206 272 SSLDETIKIWLYTHTKNNAE---LSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LF 347 (371)
Q Consensus 272 ~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l 347 (371)
++.|+.|++||++..+.... ...+..+.+.+++.++++++.++.|++||+++.+......+...|.+++|+|++ +|
T Consensus 201 ~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 280 (337)
T 1gxr_A 201 GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWF 280 (337)
T ss_dssp EETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEE
T ss_pred EecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEE
Confidence 99999999999887653221 234555566666779999999999999999998876655578999999999999 99
Q ss_pred EeeCCCCcEEEEEcccccee
Q 041206 348 FPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 348 ~~~~~dg~i~iw~~~~~~~~ 367 (371)
++++.||.|++|++.+++..
T Consensus 281 ~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 281 VSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp EEEETTSEEEEEETTTCCEE
T ss_pred EEecCCCcEEEEECCCCeEE
Confidence 99999999999999877654
No 66
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.3e-34 Score=253.80 Aligned_cols=258 Identities=11% Similarity=0.128 Sum_probs=201.0
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCC-------cEEEEECCCCce--------EEE--Ee-CCCeeEEEeecCCEEEEe----
Q 041206 96 KKAVTNVGLPSGSNKLYSGSRDG-------RVSVWDRDSGRC--------VNV--IT-NGAEIGCLISEGSWVFLG---- 153 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~l~s~~~dg-------~v~iwd~~~~~~--------~~~--~~-~~~~~~~~~~~~~~~~~~---- 153 (371)
.-||++++|+||+++|++|+.|. .|++|++..+.. ... +. +...+.++.++++.++++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN 93 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence 35899999999999999997543 599999876532 111 22 234577888888877764
Q ss_pred --------cCCcEEEEEeCCC--------------------CeeEEEEeCC--EEE--EEeCCCeEEEEeccCCCCccee
Q 041206 154 --------LPNAVKSWRVNAA--------------------SVNALVVNND--LLF--AGSEGGVISVWKGTFVANPFKQ 201 (371)
Q Consensus 154 --------~~~~i~~~~~~~~--------------------~v~~~~~~~~--~l~--~~~~dg~v~iwd~~~~~~~~~~ 201 (371)
.++.+++|++... .+.+++|+|+ +++ +++.|+.|++||+.+. ++
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~----~~ 169 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL----TE 169 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT----EE
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC----cE
Confidence 2578999997654 3678999998 554 4457899999999998 77
Q ss_pred eEEEecCcceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEE--EeecCCCcEEEEEEc--CCeEEEEeCCC-
Q 041206 202 VASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQ--TLKGHSDTVTSLLFW--DEYLFSSSLDE- 276 (371)
Q Consensus 202 ~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~--~~~l~s~~~dg- 276 (371)
+..+..+..|.+++|+||+++++. +.++.+.+|+..+++.+. ....|...|.+++|+ ++++++++.|+
T Consensus 170 ~~~~~~~~~V~~v~fspdg~~l~s-------~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~ 242 (365)
T 4h5i_A 170 KFEIETRGEVKDLHFSTDGKVVAY-------ITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKG 242 (365)
T ss_dssp EEEEECSSCCCEEEECTTSSEEEE-------ECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSS
T ss_pred EEEeCCCCceEEEEEccCCceEEe-------ccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCc
Confidence 777764449999999999984444 446667788877776653 345788899999998 67899998887
Q ss_pred ---cEEEEEccCCCC--------cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec--CCceEEEEEeCC
Q 041206 277 ---TIKIWLYTHTKN--------NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF--SRREVEVDQIGP 343 (371)
Q Consensus 277 ---~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~ 343 (371)
.+++|++..... ..+...+..+.+.+++++|++|+.|++|+|||+++++++..+. |..+|++++|+|
T Consensus 243 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSp 322 (365)
T 4h5i_A 243 KGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISP 322 (365)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECT
T ss_pred ceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECC
Confidence 688888665432 1223356666677777799999999999999999999988864 789999999999
Q ss_pred CC-eEEeeCCCCcEEEEEcccc
Q 041206 344 AG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 344 ~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
|| +||+|+.|++|+||++...
T Consensus 323 dg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 323 DSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TSCEEEEEETTSEEEEEECCTT
T ss_pred CCCEEEEEeCCCeEEEEEcCCC
Confidence 99 9999999999999999643
No 67
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.2e-33 Score=272.94 Aligned_cols=323 Identities=13% Similarity=0.137 Sum_probs=260.8
Q ss_pred cccCCCCceeeccCcc-------cccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCC
Q 041206 13 HKHSEGGETMMSDDDD-------LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNS 85 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (371)
..|+|+|.+|+++..+ ...++.+..+.+|...|.+++++|.+.++. .++.++.+++|+ ..+
T Consensus 19 i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~----~~~~dg~i~vw~--------~~~ 86 (814)
T 3mkq_A 19 IDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWII----VGSDDFRIRVFN--------YNT 86 (814)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEE----EEETTSEEEEEE--------TTT
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEE----EEeCCCeEEEEE--------CCC
Confidence 4589999999998766 457889999999999999999999776543 355688999999 456
Q ss_pred ceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceEEEEeC-CCeeEEEee---cCCEEEE-ecCCcEE
Q 041206 86 LATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSG-RCVNVITN-GAEIGCLIS---EGSWVFL-GLPNAVK 159 (371)
Q Consensus 86 ~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~-~~~~~~~~~---~~~~~~~-~~~~~i~ 159 (371)
++.+..+.+|.+.|++++|+|++++|++++.||+|++||+.++ .....+.. ...+.++.+ ++..+++ +.++.|+
T Consensus 87 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~ 166 (814)
T 3mkq_A 87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166 (814)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred CcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEE
Confidence 7889999999999999999999999999999999999999987 55566654 456777765 3445555 5689999
Q ss_pred EEEeCCC------------CeeEEEEeC--C--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-
Q 041206 160 SWRVNAA------------SVNALVVNN--D--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR- 221 (371)
Q Consensus 160 ~~~~~~~------------~v~~~~~~~--~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~- 221 (371)
+||+.+. .+.+++|+| + ++++++.||.|++||+.++ +.+..+..|. .|.+++|+|++.
T Consensus 167 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~ 242 (814)
T 3mkq_A 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK----SCVATLEGHMSNVSFAVFHPTLPI 242 (814)
T ss_dssp EEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT----EEEEEEECCSSCEEEEEECSSSSE
T ss_pred EEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC----cEEEEEcCCCCCEEEEEEcCCCCE
Confidence 9998543 788999987 5 9999999999999999988 8888999998 999999999986
Q ss_pred eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEcC--C-eEEEEeCCCcEEEEEccCCCCcc--------
Q 041206 222 WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWD--E-YLFSSSLDETIKIWLYTHTKNNA-------- 290 (371)
Q Consensus 222 l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~s~~~dg~i~iwd~~~~~~~~-------- 290 (371)
++++ +.||.|++||+.+++.+..+..|...+.+++|++ . .+++++.++.+.+|++.......
T Consensus 243 l~~~-------~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 315 (814)
T 3mkq_A 243 IISG-------SEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKL 315 (814)
T ss_dssp EEEE-------ETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEE
T ss_pred EEEE-------eCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCE
Confidence 8889 9999999999999999999999999999999983 2 34555667778889865432100
Q ss_pred ---------------------------------------eecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec
Q 041206 291 ---------------------------------------ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF 331 (371)
Q Consensus 291 ---------------------------------------~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 331 (371)
....+..+.+.++++++++++ ++.+.+|++......
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~---- 390 (814)
T 3mkq_A 316 VWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNK---- 390 (814)
T ss_dssp EEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEE----
T ss_pred EEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccccc----
Confidence 001133455566666888887 899999998654332
Q ss_pred CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccc
Q 041206 332 SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 332 ~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~ 363 (371)
+.+.+.+++|+|++ ++++++.+|.|++|+...
T Consensus 391 ~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~ 423 (814)
T 3mkq_A 391 AFGKCQDFVWGPDSNSYALIDETGQIKYYKNFK 423 (814)
T ss_dssp EEEECSEEEECTTSSCEEEECTTCCEEEEETTE
T ss_pred CCCceEEEEEeCCCCeEEEEeCCCcEEEEECCC
Confidence 24567788999988 888888899999997543
No 68
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.2e-33 Score=247.58 Aligned_cols=251 Identities=20% Similarity=0.239 Sum_probs=206.7
Q ss_pred cCCceeeEeeeCccCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEE
Q 041206 83 TNSLATLMKLNGHKKAVTNVGLPSG-SNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSW 161 (371)
Q Consensus 83 ~~~~~~~~~l~~h~~~V~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 161 (371)
.+..++..+|+||++.|++++|+|+ +++|+||+.||+|+|||+.+++...... ++.+
T Consensus 25 ~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~----------------------~~~l 82 (340)
T 4aow_A 25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIP----------------------QRAL 82 (340)
T ss_dssp -CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEE----------------------EEEE
T ss_pred CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccccee----------------------eEEE
Confidence 4566778899999999999999997 6899999999999999998764321111 1122
Q ss_pred EeCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCe
Q 041206 162 RVNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHT 237 (371)
Q Consensus 162 ~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~ 237 (371)
..|...|.+++|+|+ +|++++.|+.|++|+.... ........+. .+..+.+++++. ++++ +.|+.
T Consensus 83 ~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~s~-------s~d~~ 151 (340)
T 4aow_A 83 RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG----TTTRRFVGHTKDVLSVAFSSDNRQIVSG-------SRDKT 151 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEECTTSSCEEEE-------ETTSC
T ss_pred eCCCCCEEEEEECCCCCEEEEEcccccceEEeeccc----ceeeeecCCCCceeEEEEeecCccceee-------cCCCe
Confidence 336668999999998 9999999999999999988 6777777777 888999999886 8899 99999
Q ss_pred EEEEECCCceE-EEEeecCCCcEEEEEEc----CCeEEEEeCCCcEEEEEccCCCCc----ceecceEEEEecCCCCEEE
Q 041206 238 TRTWNLDNLEC-VQTLKGHSDTVTSLLFW----DEYLFSSSLDETIKIWLYTHTKNN----AELSSLFGMLDAEAKPVLF 308 (371)
Q Consensus 238 i~iwd~~~~~~-~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~l~ 308 (371)
+++||+..... ...+.+|...+..++|. ..++++++.|+.|++||++..+.. .+...+..+.+.+++++|+
T Consensus 152 ~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 231 (340)
T 4aow_A 152 IKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCA 231 (340)
T ss_dssp EEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEE
Confidence 99999986554 34566899999999997 357899999999999998876532 2223556666667777999
Q ss_pred EecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCCeEEeeCCCCcEEEEEccccce
Q 041206 309 SSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAGLFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 309 ~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~~~~~ 366 (371)
+++.|+.|++||+++.+++..+.+...+.++.|+|++.+++++.|+.|++||+.....
T Consensus 232 s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 289 (340)
T 4aow_A 232 SGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKII 289 (340)
T ss_dssp EEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEE
T ss_pred EEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeE
Confidence 9999999999999999999998888999999999999677777899999999987543
No 69
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-34 Score=253.27 Aligned_cols=242 Identities=13% Similarity=0.149 Sum_probs=196.6
Q ss_pred eeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--CceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeC
Q 041206 87 ATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDS--GRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVN 164 (371)
Q Consensus 87 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 164 (371)
+++..+++|.+.|++++|+|++++|++|+.||.|++||+.. ++.+..+.. |
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---------------------------h 54 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG---------------------------H 54 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC---------------------------C
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecC---------------------------C
Confidence 56788999999999999999999999999999999999973 344444442 5
Q ss_pred CCCeeEEEEeC----CEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCC--ce-eEecccceeeeeCCC
Q 041206 165 AASVNALVVNN----DLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSND--TR-WNSKEEAAVFEFCGH 236 (371)
Q Consensus 165 ~~~v~~~~~~~----~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~--~~-l~~~~~~~~~~~~dg 236 (371)
...|.+++|++ ++|++++.||.|++||+.++. ......+..|. .|.+++|+|+ +. ++++ +.|+
T Consensus 55 ~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-------~~d~ 125 (379)
T 3jrp_A 55 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR--WSQIAVHAVHSASVNSVQWAPHEYGPLLLVA-------SSDG 125 (379)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCGGGCSEEEEE-------ETTS
T ss_pred CCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc--eeEeeeecCCCcceEEEEeCCCCCCCEEEEe-------cCCC
Confidence 56799999973 399999999999999999871 12677778888 9999999998 64 8899 9999
Q ss_pred eEEEEECCCce--EEEEeecCCCcEEEEEEcC---------------CeEEEEeCCCcEEEEEccCCCCc--------ce
Q 041206 237 TTRTWNLDNLE--CVQTLKGHSDTVTSLLFWD---------------EYLFSSSLDETIKIWLYTHTKNN--------AE 291 (371)
Q Consensus 237 ~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~---------------~~l~s~~~dg~i~iwd~~~~~~~--------~~ 291 (371)
.|++||++++. ....+..|...|.+++|++ ++|++++.|+.|++||++..... .+
T Consensus 126 ~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h 205 (379)
T 3jrp_A 126 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 205 (379)
T ss_dssp EEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred cEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc
Confidence 99999999873 4456778999999999984 68999999999999998765431 12
Q ss_pred ecceEEEEecCC---CCEEEEecCCCeEEEEEcCCcce---eeee---cCCceEEEEEeCCCC-eEEeeCCCCcEEEEEc
Q 041206 292 LSSLFGMLDAEA---KPVLFSSGKDSAIRLYELPSFKL---RARI---FSRREVEVDQIGPAG-LFFPGDASGSVGVWKW 361 (371)
Q Consensus 292 ~~~~~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~---~~~~---~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~ 361 (371)
...+..+.+.++ +.+|++++.||.|++||++++.. .... .+...|.+++|+|++ +|++++.||.|++|++
T Consensus 206 ~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 206 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 285 (379)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence 234555666666 67999999999999999998641 1111 157889999999999 9999999999999999
Q ss_pred ccc
Q 041206 362 LLA 364 (371)
Q Consensus 362 ~~~ 364 (371)
...
T Consensus 286 ~~~ 288 (379)
T 3jrp_A 286 NLE 288 (379)
T ss_dssp EET
T ss_pred CCC
Confidence 843
No 70
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-34 Score=258.90 Aligned_cols=285 Identities=14% Similarity=0.189 Sum_probs=224.8
Q ss_pred eccceeeeeeeecce-eeccceeeC------CccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEE
Q 041206 41 FGFGLAAMAIRVCNN-WISDSCVYG------DKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYS 113 (371)
Q Consensus 41 h~~~v~~~~~~~~~~-~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s 113 (371)
+...|.+++++|... ++......+ +.++.+++|+.... ...+++..+ .|...|++++|+|++++|++
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~-----~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~ 84 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAA-----DSEKPIASL-QVDSKFNDLDWSHNNKIIAG 84 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSG-----GGCSCSCCC-CCSSCEEEEEECSSSSCEEE
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCC-----CCCcEEEEE-ecCCceEEEEECCCCCeEEE
Confidence 345788899999854 433222223 67889999993211 011234444 58999999999999999999
Q ss_pred EeCCCcEEEEECCC----CceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC---EEEEEeCCCe
Q 041206 114 GSRDGRVSVWDRDS----GRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND---LLFAGSEGGV 186 (371)
Q Consensus 114 ~~~dg~v~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~---~l~~~~~dg~ 186 (371)
++.||.|++||+.+ .+.+..+.. |...|.+++|+|+ ++++++.||.
T Consensus 85 ~~~dg~v~vw~~~~~~~~~~~~~~~~~---------------------------h~~~v~~~~~~~~~~~~l~s~~~dg~ 137 (416)
T 2pm9_A 85 ALDNGSLELYSTNEANNAINSMARFSN---------------------------HSSSVKTVKFNAKQDNVLASGGNNGE 137 (416)
T ss_dssp EESSSCEEEECCSSTTSCCCEEEECCC---------------------------SSSCCCEEEECSSSTTBEEEECSSSC
T ss_pred EccCCeEEEeecccccccccchhhccC---------------------------CccceEEEEEcCCCCCEEEEEcCCCe
Confidence 99999999999987 234444442 5557999999975 8999999999
Q ss_pred EEEEeccCCC------CcceeeEEEecCc-ceEEEEecCC-ce-eEecccceeeeeCCCeEEEEECCCceEEEEeecC--
Q 041206 187 ISVWKGTFVA------NPFKQVASIRAPL-WFCSLSSSND-TR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGH-- 255 (371)
Q Consensus 187 v~iwd~~~~~------~~~~~~~~~~~~~-~v~~~~~~~~-~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~-- 255 (371)
|++||+.+.. .. .....+..|. .|.+++|+|+ +. ++++ +.|+.|++||+++++.+..+..|
T Consensus 138 v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-------~~dg~v~iwd~~~~~~~~~~~~~~~ 209 (416)
T 2pm9_A 138 IFIWDMNKCTESPSNYTP-LTPGQSMSSVDEVISLAWNQSLAHVFASA-------GSSNFASIWDLKAKKEVIHLSYTSP 209 (416)
T ss_dssp EEBCBTTTTSSCTTTCCC-BCCCCSCCSSCCCCEEEECSSCTTEEEEE-------SSSSCEEEEETTTTEEEEEECCCCC
T ss_pred EEEEECCCCccccccccc-cccccccCCCCCeeEEEeCCCCCcEEEEE-------cCCCCEEEEECCCCCcceEEecccc
Confidence 9999999874 11 1223345677 9999999998 44 8888 99999999999999999888876
Q ss_pred ----CCcEEEEEEcC---CeEEEEeCCC---cEEEEEccCCCC-----c-ceecceEEEEecC-CCCEEEEecCCCeEEE
Q 041206 256 ----SDTVTSLLFWD---EYLFSSSLDE---TIKIWLYTHTKN-----N-AELSSLFGMLDAE-AKPVLFSSGKDSAIRL 318 (371)
Q Consensus 256 ----~~~v~~~~~~~---~~l~s~~~dg---~i~iwd~~~~~~-----~-~~~~~~~~~~~~~-~~~~l~~~~~d~~i~i 318 (371)
...|.+++|++ .++++++.|+ .|++||++.... . .+...+..+.+.+ ++.+|++++.|+.|++
T Consensus 210 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~ 289 (416)
T 2pm9_A 210 NSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLL 289 (416)
T ss_dssp SSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEE
T ss_pred ccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEE
Confidence 78999999993 5899999998 999999887531 1 2334556666655 7779999999999999
Q ss_pred EEcCCcceeeeec-CCceEEEEEeCCCC--eEEeeCCCCcEEEEEccccce
Q 041206 319 YELPSFKLRARIF-SRREVEVDQIGPAG--LFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 319 wd~~~~~~~~~~~-~~~~v~~~~~s~~~--~l~~~~~dg~i~iw~~~~~~~ 366 (371)
||+++++++..+. |...|.+++|+|++ +|++++.||.|++|++.....
T Consensus 290 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 290 WNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp ECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred eeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 9999999888876 57899999999997 999999999999999987653
No 71
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-34 Score=263.31 Aligned_cols=314 Identities=9% Similarity=0.007 Sum_probs=217.3
Q ss_pred ceeEEEEEeeccceeeeeeeecc---------eeecc-c--------------eeeCCccceEEEEEeccCCCCccCCce
Q 041206 32 GRAEEREEMFGFGLAAMAIRVCN---------NWISD-S--------------CVYGDKCRFLHSWVHSVDGDNTTNSLA 87 (371)
Q Consensus 32 ~~~~~~~~~h~~~v~~~~~~~~~---------~~~~~-~--------------~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (371)
++....+. +...|.+++++|.. .+++. . ..+++.++.|++|++.... ....
T Consensus 124 ~r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~----~~~~ 198 (524)
T 2j04_B 124 KRRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTST----LHCV 198 (524)
T ss_dssp CSCEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTT----CCEE
T ss_pred CcceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCC----CCce
Confidence 44444444 68889999998875 33332 1 2346688899999954310 0112
Q ss_pred eeEeeeCccCCeEEEEEcCC------CCEEEEEeCCCcEEEEECCCCceE-----------EEEe-CCCeeEEEee-cCC
Q 041206 88 TLMKLNGHKKAVTNVGLPSG------SNKLYSGSRDGRVSVWDRDSGRCV-----------NVIT-NGAEIGCLIS-EGS 148 (371)
Q Consensus 88 ~~~~l~~h~~~V~~~~~~~~------~~~l~s~~~dg~v~iwd~~~~~~~-----------~~~~-~~~~~~~~~~-~~~ 148 (371)
...++.+|.+.|.+++|+|+ +.+||+++.||+|++||+.+++.. ..+. +...+.++.+ ++.
T Consensus 199 ~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~ 278 (524)
T 2j04_B 199 KVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT 278 (524)
T ss_dssp EEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS
T ss_pred EEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC
Confidence 24567888999999999996 579999999999999999876421 1333 3456778876 344
Q ss_pred EEEE-ecCCcEEEEEeCCC------------CeeEE--EEeC---CEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-
Q 041206 149 WVFL-GLPNAVKSWRVNAA------------SVNAL--VVNN---DLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL- 209 (371)
Q Consensus 149 ~~~~-~~~~~i~~~~~~~~------------~v~~~--~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~- 209 (371)
.+++ +.|++|++||+.++ .|.++ ++++ .+|++++.|++|++||++++ ++...+.+|.
T Consensus 279 ~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~----~~~~~~~~~~~ 354 (524)
T 2j04_B 279 TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI----ATTKTTVSRFR 354 (524)
T ss_dssp EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH----HHHCEEEEECS
T ss_pred eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC----Ccccccccccc
Confidence 5655 56899999998643 68888 4565 38999999999999999987 5666666654
Q ss_pred --ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEcc
Q 041206 210 --WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYT 284 (371)
Q Consensus 210 --~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~ 284 (371)
.|.+++|+|+++ ++++ +.|++|++||++++.++..+.+|.+.|++++|+ +++|++|+.|++|++||+.
T Consensus 355 ~~~v~~v~fsp~~~~l~s~-------~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 355 GSNLVPVVYCPQIYSYIYS-------DGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAA 427 (524)
T ss_dssp CCSCCCEEEETTTTEEEEE-------CSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred cCcccceEeCCCcCeEEEe-------CCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence 478999999885 8888 999999999999999888899999999999999 6799999999999999975
Q ss_pred CCCCccee--------cceEEEEecCCCCEEEEecCCCeEEEEEcC-Ccceeeeec-CCceEEEEEeCCCC----eEEee
Q 041206 285 HTKNNAEL--------SSLFGMLDAEAKPVLFSSGKDSAIRLYELP-SFKLRARIF-SRREVEVDQIGPAG----LFFPG 350 (371)
Q Consensus 285 ~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~-~~~~v~~~~~s~~~----~l~~~ 350 (371)
........ ..+..+.+.+++..+ ....+ +.+|+.. ++..+..+. |...|.+++|+|++ .+|+|
T Consensus 428 ~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~-~~~~~--~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg 504 (524)
T 2j04_B 428 RRLLHGIKNSSATQKSLRLWKWDYSIKDDKY-RIDSS--YEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFS 504 (524)
T ss_dssp SSTTTCC------CCCCEEEECBCCSSSCEE-EECCC--CCCCC-------------CCCSCCCEEECCSTTTTTEEEEE
T ss_pred HhhccccccCccceeeeEEEEeccCCCCCeE-EccCC--ceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhh
Confidence 43222110 012233334444333 22222 2233322 344444554 67899999999994 89999
Q ss_pred CCCCcEEEEEcccc
Q 041206 351 DASGSVGVWKWLLA 364 (371)
Q Consensus 351 ~~dg~i~iw~~~~~ 364 (371)
+.||.|+||++...
T Consensus 505 ~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 505 NSAGLLTLEYLSLE 518 (524)
T ss_dssp CTTSEEEEEECSCC
T ss_pred ccCceEEEEEcccc
Confidence 99999999998754
No 72
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-34 Score=258.21 Aligned_cols=277 Identities=13% Similarity=0.051 Sum_probs=206.5
Q ss_pred EEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCC-ceeeEeeeCccCCeEEEEEcCCCCEEEEEe
Q 041206 37 REEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNS-LATLMKLNGHKKAVTNVGLPSGSNKLYSGS 115 (371)
Q Consensus 37 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~ 115 (371)
.++.|...|.+++++|...++. .++.++.|++|+. ... .+.+..+.+|...|++++|+|++++|++++
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~----~~~~d~~i~iw~~-------~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s 74 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFV----TTTATNQVELYEQ-------DGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCS 74 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEE----CCCSSSCBCEEEE-------ETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred eEecCCCcEEEEEECCCCCEEE----EecCCCEEEEEEc-------cCCceEEEEEEecCCceEEEEEEeCCCCEEEEEe
Confidence 3456778999999999766443 3567889999993 222 278889999999999999999999999999
Q ss_pred CCCcEEEEECCCCc---eEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEE
Q 041206 116 RDGRVSVWDRDSGR---CVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVW 190 (371)
Q Consensus 116 ~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iw 190 (371)
.|++|++||+.+++ ....+.. |...|.+++|+|+ +|++++.|+.|++|
T Consensus 75 ~d~~v~vwd~~~~~~~~~~~~~~~---------------------------~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 127 (377)
T 3dwl_C 75 QDRNAYVYEKRPDGTWKQTLVLLR---------------------------LNRAATFVRWSPNEDKFAVGSGARVISVC 127 (377)
T ss_dssp TTSSEEEC------CCCCEEECCC---------------------------CSSCEEEEECCTTSSCCEEEESSSCEEEC
T ss_pred CCCeEEEEEcCCCCceeeeeEecc---------------------------cCCceEEEEECCCCCEEEEEecCCeEEEE
Confidence 99999999999876 3333322 4557999999988 89999999999999
Q ss_pred eccCCCCcceeeEEEec-Cc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECC------------------CceEE
Q 041206 191 KGTFVANPFKQVASIRA-PL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLD------------------NLECV 249 (371)
Q Consensus 191 d~~~~~~~~~~~~~~~~-~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~------------------~~~~~ 249 (371)
|++.... ......+.. |. .|.+++|+|+++ ++++ +.|+.|++||++ .++++
T Consensus 128 d~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (377)
T 3dwl_C 128 YFEQEND-WWVSKHLKRPLRSTILSLDWHPNNVLLAAG-------CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVC 199 (377)
T ss_dssp CC------CCCCEEECSSCCSCEEEEEECTTSSEEEEE-------ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEE
T ss_pred EECCccc-ceeeeEeecccCCCeEEEEEcCCCCEEEEE-------eCCCEEEEEEEEecccCCCccccccccccchhhhh
Confidence 9998721 124667777 78 999999999986 8899 999999999985 35677
Q ss_pred EEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC----cc----eecceEEEEecCCCCEEEEecCCCeEEEE
Q 041206 250 QTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN----NA----ELSSLFGMLDAEAKPVLFSSGKDSAIRLY 319 (371)
Q Consensus 250 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~----~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 319 (371)
..+ +|...|.+++|+ +++|++++.|+.|++||+...+. .. +...+..+.+.+++.+|++++.++.+ +|
T Consensus 200 ~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~ 277 (377)
T 3dwl_C 200 AEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LL 277 (377)
T ss_dssp ECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EE
T ss_pred hcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EE
Confidence 777 899999999998 67999999999999999887664 11 22345555566666688888776655 66
Q ss_pred EcCCcc--ee----------------------------------ee-----------------ecCCceEEEEEeCCCC-
Q 041206 320 ELPSFK--LR----------------------------------AR-----------------IFSRREVEVDQIGPAG- 345 (371)
Q Consensus 320 d~~~~~--~~----------------------------------~~-----------------~~~~~~v~~~~~s~~~- 345 (371)
+..... .. .. ..|...|+++++.+..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~ 357 (377)
T 3dwl_C 278 QGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTP 357 (377)
T ss_dssp CCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEET
T ss_pred EeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCC
Confidence 654211 00 00 0167789999976644
Q ss_pred ----eEEeeCCCCcEEEEEc
Q 041206 346 ----LFFPGDASGSVGVWKW 361 (371)
Q Consensus 346 ----~l~~~~~dg~i~iw~~ 361 (371)
.|+||+.||.|++||+
T Consensus 358 ~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 358 GNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp TEEEEEEEEETTSEEEEECC
T ss_pred CceEEEEeecCCCcEEEecC
Confidence 5999999999999985
No 73
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=7.2e-33 Score=270.50 Aligned_cols=284 Identities=14% Similarity=0.209 Sum_probs=240.5
Q ss_pred ceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEE
Q 041206 32 GRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKL 111 (371)
Q Consensus 32 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 111 (371)
.++.+.+.+|.+.|.+++++|.+.++. .+..++.|++|+ ..+++.+..+.+|..+|++++|+|++++|
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la----~~~~~g~v~iwd--------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 70 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVL----TTLYSGRVEIWN--------YETQVEVRSIQVTETPVRAGKFIARKNWI 70 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEE----EEETTSEEEEEE--------TTTTEEEEEEECCSSCEEEEEEEGGGTEE
T ss_pred cccceeeecCCCceEEEEECCCCCEEE----EEeCCCEEEEEE--------CCCCceEEEEecCCCcEEEEEEeCCCCEE
Confidence 456788999999999999999877654 245678999999 45678899999999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEE
Q 041206 112 YSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISV 189 (371)
Q Consensus 112 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~i 189 (371)
++++.||.|++||+.+++.+..+.. |...|.+++|+|+ ++++++.||.|++
T Consensus 71 ~~~~~dg~i~vw~~~~~~~~~~~~~---------------------------~~~~v~~~~~s~~~~~l~~~~~dg~i~v 123 (814)
T 3mkq_A 71 IVGSDDFRIRVFNYNTGEKVVDFEA---------------------------HPDYIRSIAVHPTKPYVLSGSDDLTVKL 123 (814)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEEC---------------------------CSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEec---------------------------CCCCEEEEEEeCCCCEEEEEcCCCEEEE
Confidence 9999999999999999988877764 4556999999998 8999999999999
Q ss_pred EeccCCCCcceeeEEEecCc-ceEEEEecC-Cce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCC-CcEEEEEEc
Q 041206 190 WKGTFVANPFKQVASIRAPL-WFCSLSSSN-DTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHS-DTVTSLLFW 265 (371)
Q Consensus 190 wd~~~~~~~~~~~~~~~~~~-~v~~~~~~~-~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~ 265 (371)
||+.++. .....+..|. .|.+++|+| ++. ++++ +.||.|++||+++++....+..+. ..+.+++|+
T Consensus 124 w~~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-------~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 193 (814)
T 3mkq_A 124 WNWENNW---ALEQTFEGHEHFVMCVAFNPKDPSTFASG-------CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193 (814)
T ss_dssp EEGGGTS---EEEEEEECCSSCEEEEEEETTEEEEEEEE-------ETTSEEEEEETTCSSCSEEEECCCTTCCCEEEEC
T ss_pred EECCCCc---eEEEEEcCCCCcEEEEEEEcCCCCEEEEE-------eCCCeEEEEECCCCcceeEEecCCCCCEEEEEEE
Confidence 9998762 5667788888 999999999 665 8899 999999999999888877777665 889999996
Q ss_pred ----CCeEEEEeCCCcEEEEEccCCCCcc----eecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceE
Q 041206 266 ----DEYLFSSSLDETIKIWLYTHTKNNA----ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREV 336 (371)
Q Consensus 266 ----~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v 336 (371)
+.++++++.||.|++||+...+... +...+..+.+.+++.++++++.||.|++||+.+++.+..+. +...+
T Consensus 194 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v 273 (814)
T 3mkq_A 194 PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERS 273 (814)
T ss_dssp CSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSE
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcE
Confidence 5699999999999999987765322 22355666677777799999999999999999998888876 56899
Q ss_pred EEEEeCCCC--eEEeeCCCCcEEEEEcccc
Q 041206 337 EVDQIGPAG--LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 337 ~~~~~s~~~--~l~~~~~dg~i~iw~~~~~ 364 (371)
.+++|+|++ .+++.+.|+.+.+|++...
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (814)
T 3mkq_A 274 WCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (814)
T ss_dssp EEEEECTTCGGGEEEEEETTEEEEEECSCC
T ss_pred EEEEEccCCCceEEEEEeCCCEEEEEcCCC
Confidence 999999998 4455556778999997654
No 74
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.4e-33 Score=251.38 Aligned_cols=268 Identities=11% Similarity=0.072 Sum_probs=215.4
Q ss_pred eeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 041206 45 LAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWD 124 (371)
Q Consensus 45 v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd 124 (371)
+..++++|...++ ..++.++.+++|+ ....+....+.+| ..+....|+|++++|++|+.||.|++||
T Consensus 59 ~~~~~~s~~g~~l----~~~~~d~~v~i~d--------~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd 125 (420)
T 3vl1_A 59 GKGNTFEKVGSHL----YKARLDGHDFLFN--------TIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLD 125 (420)
T ss_dssp CTTCEEEEEETTE----EEEEETTEEEEEE--------CCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEEC
T ss_pred ccceeeeecCCeE----EEEEcCCcEEEEE--------ecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEe
Confidence 3467888865543 3456678999999 3444556666666 4555667899999999999999999999
Q ss_pred CCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceee
Q 041206 125 RDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQV 202 (371)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~ 202 (371)
+.+++....+.. |...|.+++|+|+ +|++++.|+.|++||+.++ +.+
T Consensus 126 ~~~~~~~~~~~~---------------------------h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~----~~~ 174 (420)
T 3vl1_A 126 SNFNLQREIDQA---------------------------HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG----SNP 174 (420)
T ss_dssp TTSCEEEEETTS---------------------------SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC----CCC
T ss_pred CCCcceeeeccc---------------------------ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC----cCc
Confidence 998887766543 4557999999988 9999999999999999988 778
Q ss_pred EEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeec---CCCcEEEEEE-------------
Q 041206 203 ASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKG---HSDTVTSLLF------------- 264 (371)
Q Consensus 203 ~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~------------- 264 (371)
..+.+|. .|.+++|+|++. ++++ +.|+.|++||+++++.+..+.. |...|.++++
T Consensus 175 ~~~~~h~~~v~~~~~~~~~~~l~s~-------~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 247 (420)
T 3vl1_A 175 RTLIGHRATVTDIAIIDRGRNVLSA-------SLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEIST 247 (420)
T ss_dssp EEEECCSSCEEEEEEETTTTEEEEE-------ETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCC
T ss_pred eEEcCCCCcEEEEEEcCCCCEEEEE-------cCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeeccc
Confidence 8889999 999999999986 8899 9999999999999999988875 4556666665
Q ss_pred --------c--CCeEEEEeCCCcEEEEEccCCCCc-----ceecceEEEEecCCCC-EEEEecCCCeEEEEEcCCcce-e
Q 041206 265 --------W--DEYLFSSSLDETIKIWLYTHTKNN-----AELSSLFGMLDAEAKP-VLFSSGKDSAIRLYELPSFKL-R 327 (371)
Q Consensus 265 --------~--~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~-~ 327 (371)
+ +++|++++.||.|++||++..+.. .+...+..+.+.+++. +|++++.||.|++||+++++. +
T Consensus 248 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~ 327 (420)
T 3vl1_A 248 SKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPV 327 (420)
T ss_dssp CCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS
T ss_pred CcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCch
Confidence 3 569999999999999998876532 1223455555666665 999999999999999998754 4
Q ss_pred eeec--CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccc
Q 041206 328 ARIF--SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 328 ~~~~--~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
..+. +...|.++.+ |++ +|++++.||.|++|++...
T Consensus 328 ~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 328 GEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp EEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred hhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence 4444 5678888866 466 9999999999999998763
No 75
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-34 Score=260.76 Aligned_cols=283 Identities=10% Similarity=0.044 Sum_probs=212.1
Q ss_pred cccCCCCceeeccCcccc--cceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeE
Q 041206 13 HKHSEGGETMMSDDDDLM--KGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLM 90 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 90 (371)
-.+||||+++|+++.|.. .++....+.+|...|.+++|+|.+ .++.+.+|. ..+..+.
T Consensus 21 v~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg-----------~~~~~~~~~---------~~~~~~~ 80 (588)
T 2j04_A 21 LTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLE-----------FENKLDFEL---------AQQNGLL 80 (588)
T ss_dssp EEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCC-----------CCCTTTTSC---------CCSSCSS
T ss_pred EEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCC-----------CcceEEEEe---------CCCceEe
Confidence 459999999999999933 345555568999999999999943 455555554 1222233
Q ss_pred eeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeE
Q 041206 91 KLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNA 170 (371)
Q Consensus 91 ~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~ 170 (371)
.+ +|...|++++|||+|++||+++.||+|++||.+. ++..+.++.++ .+..+.+
T Consensus 81 ~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~-----------------------~~~sv~s 134 (588)
T 2j04_A 81 NS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNL-----------------------SSRTYHC 134 (588)
T ss_dssp TT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCS-----------------------TTTCEEE
T ss_pred ec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCcc-----------------------ccccEEE
Confidence 33 4688999999999999999999999999999544 44443311110 1235899
Q ss_pred EEEeCC--EEEEEeCCCeEEEEeccCCCCc---ceeeEEE----ecCc-ceEEEEecCCceeEecccceeeeeCCCeEEE
Q 041206 171 LVVNND--LLFAGSEGGVISVWKGTFVANP---FKQVASI----RAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRT 240 (371)
Q Consensus 171 ~~~~~~--~l~~~~~dg~v~iwd~~~~~~~---~~~~~~~----~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~i 240 (371)
++|+|+ +|++|+.||+|++||+.++... +-.+.++ .+|. .|.+++|+|++ ++++ +.|+.|++
T Consensus 135 vafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laas-------s~D~tVrl 206 (588)
T 2j04_A 135 FEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAA-------LSNNSVFS 206 (588)
T ss_dssp EEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEE-------ETTCCEEE
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEE-------eCCCeEEE
Confidence 999999 9999999999999999886310 0135665 5667 99999999999 9999 99999999
Q ss_pred EECCCceE---EEEe-ecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCC----cceecceEEEEe--cCCCCEEEEe
Q 041206 241 WNLDNLEC---VQTL-KGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKN----NAELSSLFGMLD--AEAKPVLFSS 310 (371)
Q Consensus 241 wd~~~~~~---~~~~-~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~--~~~~~~l~~~ 310 (371)
||+.+++. .+++ .+|...|.+++|+++.|++++ +++|++||+...+. .++...+..+.. .+++..++++
T Consensus 207 Wd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a 285 (588)
T 2j04_A 207 MTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMS 285 (588)
T ss_dssp ECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEEC
T ss_pred EECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEE
Confidence 99988773 3566 478899999999988999887 69999999776553 133445555566 6666689999
Q ss_pred cCCCeEEEEEcCCc-----------------------ceeeeecCCceEEEEEeCCCC-eEEeeC
Q 041206 311 GKDSAIRLYELPSF-----------------------KLRARIFSRREVEVDQIGPAG-LFFPGD 351 (371)
Q Consensus 311 ~~d~~i~iwd~~~~-----------------------~~~~~~~~~~~v~~~~~s~~~-~l~~~~ 351 (371)
+.+|+ ++|..... .....+.+...|++++||||| .+|+++
T Consensus 286 ~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 286 NKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp SSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEE
T ss_pred cCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEE
Confidence 99999 99987431 112222234469999999999 888776
No 76
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=7.7e-33 Score=265.51 Aligned_cols=249 Identities=19% Similarity=0.235 Sum_probs=203.3
Q ss_pred CceeeEeeeCccCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEe
Q 041206 85 SLATLMKLNGHKKAVTNVGLPSG-SNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRV 163 (371)
Q Consensus 85 ~~~~~~~l~~h~~~V~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 163 (371)
..+....+++|++.|++++|+|+ +++|+||+.|++|++||+.+....... ..+.+..
T Consensus 371 ~l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~----------------------~~~~~~~ 428 (694)
T 3dm0_A 371 GLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGV----------------------AQRRLTG 428 (694)
T ss_dssp SSEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCE----------------------EEEEEEC
T ss_pred ccchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccc----------------------ccceecC
Confidence 34556789999999999999986 579999999999999998764311000 0112233
Q ss_pred CCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEE
Q 041206 164 NAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTR 239 (371)
Q Consensus 164 ~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~ 239 (371)
|...|.+++|+|+ +|++|+.||.|++||+.++ .....+.+|. .|.+++|+|++. ++++ +.|++|+
T Consensus 429 h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~-------s~D~~i~ 497 (694)
T 3dm0_A 429 HSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG----VSTRRFVGHTKDVLSVAFSLDNRQIVSA-------SRDRTIK 497 (694)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEECTTSSCEEEE-------ETTSCEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC----cceeEEeCCCCCEEEEEEeCCCCEEEEE-------eCCCEEE
Confidence 6678999999998 9999999999999999998 8888999999 999999999986 8999 9999999
Q ss_pred EEECCCceEEEEe---ecCCCcEEEEEEcC----CeEEEEeCCCcEEEEEccCCCCc----ceecceEEEEecCCCCEEE
Q 041206 240 TWNLDNLECVQTL---KGHSDTVTSLLFWD----EYLFSSSLDETIKIWLYTHTKNN----AELSSLFGMLDAEAKPVLF 308 (371)
Q Consensus 240 iwd~~~~~~~~~~---~~~~~~v~~~~~~~----~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~l~ 308 (371)
+||+......... .+|...|.+++|++ ..+++++.|++|++||++..+.. .+...+..+.+.+++.+|+
T Consensus 498 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~ 577 (694)
T 3dm0_A 498 LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCA 577 (694)
T ss_dssp EECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEE
Confidence 9998765443322 46888999999983 47999999999999998876532 2334566666777777999
Q ss_pred EecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccccee
Q 041206 309 SSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 309 ~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~ 367 (371)
+++.|+.|++||+.+++.+..+.+...|.+++|+|++ +|+++ .|+.|++||+.+++..
T Consensus 578 sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~~~i~iwd~~~~~~~ 636 (694)
T 3dm0_A 578 SGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAA-TEHGIKIWDLESKSIV 636 (694)
T ss_dssp EEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEE-ETTEEEEEETTTTEEE
T ss_pred EEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEE-cCCCEEEEECCCCCCh
Confidence 9999999999999999998888888899999999999 55555 5677999999876543
No 77
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.9e-33 Score=244.64 Aligned_cols=248 Identities=16% Similarity=0.162 Sum_probs=197.3
Q ss_pred eEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCe
Q 041206 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASV 168 (371)
Q Consensus 89 ~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v 168 (371)
...+++|.+.|++++|+|++++|++|+.||.|++||+.++...... +..+..|...|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-----------------------~~~~~~~~~~v 60 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWEL-----------------------SDSWRAHDSSI 60 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEE-----------------------EEEEECCSSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCccee-----------------------cceeccCCCcE
Confidence 3567899999999999999999999999999999999876422111 11222356679
Q ss_pred eEEEEeC---C-EEEEEeCCCeEEEEeccCCCCc-----ceeeEEEecCc-ceEEEEecCC--ce-eEecccceeeeeCC
Q 041206 169 NALVVNN---D-LLFAGSEGGVISVWKGTFVANP-----FKQVASIRAPL-WFCSLSSSND--TR-WNSKEEAAVFEFCG 235 (371)
Q Consensus 169 ~~~~~~~---~-~l~~~~~dg~v~iwd~~~~~~~-----~~~~~~~~~~~-~v~~~~~~~~--~~-l~~~~~~~~~~~~d 235 (371)
.+++|+| . +|++++.||.|++||+..+... .+....+..|. .|.+++|+|+ +. ++++ +.|
T Consensus 61 ~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-------~~d 133 (351)
T 3f3f_A 61 VAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACL-------GND 133 (351)
T ss_dssp EEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEE-------ETT
T ss_pred EEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEe-------cCC
Confidence 9999987 3 9999999999999999876421 25577788888 9999999998 75 8899 999
Q ss_pred CeEEEEECCCceEEEEee-------------cCCCcEEEEEEc-----CCeEEEEeCCCcEEEEEccCCCC------cce
Q 041206 236 HTTRTWNLDNLECVQTLK-------------GHSDTVTSLLFW-----DEYLFSSSLDETIKIWLYTHTKN------NAE 291 (371)
Q Consensus 236 g~i~iwd~~~~~~~~~~~-------------~~~~~v~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~------~~~ 291 (371)
+.|++||+++++.+..+. .|...+.+++|+ ++++++++.|+.+.+|+...... ..+
T Consensus 134 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h 213 (351)
T 3f3f_A 134 GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH 213 (351)
T ss_dssp CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCC
T ss_pred CcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCC
Confidence 999999999876554433 578899999997 56999999999998887655432 122
Q ss_pred ecceEEEEecCCC----CEEEEecCCCeEEEEEcCCc-------------------------------------------
Q 041206 292 LSSLFGMLDAEAK----PVLFSSGKDSAIRLYELPSF------------------------------------------- 324 (371)
Q Consensus 292 ~~~~~~~~~~~~~----~~l~~~~~d~~i~iwd~~~~------------------------------------------- 324 (371)
...+..+.+.+++ .+|++++.||.|++||++.+
T Consensus 214 ~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (351)
T 3f3f_A 214 KSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSN 293 (351)
T ss_dssp CSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCS
T ss_pred CcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccc
Confidence 3345556666664 69999999999999999874
Q ss_pred ---ceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccce
Q 041206 325 ---KLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 325 ---~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~ 366 (371)
+.+..+. |...|++++|+|++ +|++|+.||.|++|++..++.
T Consensus 294 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 294 LQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp EEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred ccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 3444444 57899999999999 999999999999999987643
No 78
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.6e-33 Score=239.62 Aligned_cols=242 Identities=21% Similarity=0.230 Sum_probs=194.2
Q ss_pred EEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcC--CCCEEEE
Q 041206 36 EREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPS--GSNKLYS 113 (371)
Q Consensus 36 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~--~~~~l~s 113 (371)
..+.+|.+.|.+++++|...++. .++.++.+++|+.. ....+++.++.+|.++|++++|+| ++++|+|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~la----s~s~D~~v~iw~~~------~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s 72 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMA----TCSSDKTIKIFEVE------GETHKLIDTLTGHEGPVWRVDWAHPKFGTILAS 72 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEE----EEETTSCEEEEEBC------SSCBCCCEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEE----EEeCCCEEEEEecC------CCCcEEEEEEccccCCeEEEEecCCCcCCEEEE
Confidence 45678999999999999766433 46788999999932 123567889999999999999986 4899999
Q ss_pred EeCCCcEEEEECCCCc--eEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC----EEEEEeCCCeE
Q 041206 114 GSRDGRVSVWDRDSGR--CVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND----LLFAGSEGGVI 187 (371)
Q Consensus 114 ~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~----~l~~~~~dg~v 187 (371)
|+.|++|++||+++++ .+..+. .|...|.+++|+|+ +|++++.|+.|
T Consensus 73 ~s~D~~v~iWd~~~~~~~~~~~~~---------------------------~h~~~v~~v~~~p~~~g~~l~s~s~d~~v 125 (297)
T 2pm7_B 73 CSYDGKVMIWKEENGRWSQIAVHA---------------------------VHSASVNSVQWAPHEYGPMLLVASSDGKV 125 (297)
T ss_dssp EETTTEEEEEEBSSSCBCCCEEEC---------------------------CCSSCEEEEEECCGGGCSEEEEEETTSEE
T ss_pred EcCCCEEEEEEcCCCceEEEEEee---------------------------cCCCceeEEEeCcCCCCcEEEEEECCCcE
Confidence 9999999999998774 222222 25557999999984 89999999999
Q ss_pred EEEeccCCCCcceeeEEEecCc-ceEEEEecCCc--------------eeEecccceeeeeCCCeEEEEECCCce----E
Q 041206 188 SVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT--------------RWNSKEEAAVFEFCGHTTRTWNLDNLE----C 248 (371)
Q Consensus 188 ~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~--------------~l~~~~~~~~~~~~dg~i~iwd~~~~~----~ 248 (371)
++||++.... .....+.+|. .|.+++|+|++ .|++| +.|+.|++||+++++ .
T Consensus 126 ~~wd~~~~~~--~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sg-------s~D~~v~lwd~~~~~~~~~~ 196 (297)
T 2pm7_B 126 SVVEFKENGT--TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG-------GADNLVKIWKYNSDAQTYVL 196 (297)
T ss_dssp EEEEBCSSSC--BCCEEEECCSSCEEEEEECCCC------------CCEEEEE-------ETTSCEEEEEEETTTTEEEE
T ss_pred EEEEecCCCc--eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEE-------cCCCcEEEEEEcCCCceEEE
Confidence 9999987632 1245677888 99999999962 47888 999999999998765 6
Q ss_pred EEEeecCCCcEEEEEEcC-----CeEEEEeCCCcEEEEEccCCCC---------cceecceEEEEecCCCCEEEEecCCC
Q 041206 249 VQTLKGHSDTVTSLLFWD-----EYLFSSSLDETIKIWLYTHTKN---------NAELSSLFGMLDAEAKPVLFSSGKDS 314 (371)
Q Consensus 249 ~~~~~~~~~~v~~~~~~~-----~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~d~ 314 (371)
...+.+|...|.+++|++ ++|++++.|++|++||++.... ......+..+.+.+++++|++++.|+
T Consensus 197 ~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~ 276 (297)
T 2pm7_B 197 ESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 276 (297)
T ss_dssp EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTS
T ss_pred EEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCC
Confidence 678899999999999994 5899999999999999876321 12223455666667777999999999
Q ss_pred eEEEEEcCC
Q 041206 315 AIRLYELPS 323 (371)
Q Consensus 315 ~i~iwd~~~ 323 (371)
.|++|+...
T Consensus 277 ~v~lw~~~~ 285 (297)
T 2pm7_B 277 KVTLWKENL 285 (297)
T ss_dssp CEEEEEECT
T ss_pred cEEEEEECC
Confidence 999999863
No 79
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-34 Score=258.80 Aligned_cols=244 Identities=11% Similarity=0.158 Sum_probs=193.1
Q ss_pred CCceeeEee-eCccCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC---Cc---eEEEEeCCCeeEEEeecCCEEEEecC
Q 041206 84 NSLATLMKL-NGHKKAVTNVGLPS-GSNKLYSGSRDGRVSVWDRDS---GR---CVNVITNGAEIGCLISEGSWVFLGLP 155 (371)
Q Consensus 84 ~~~~~~~~l-~~h~~~V~~~~~~~-~~~~l~s~~~dg~v~iwd~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (371)
..++++..+ ++|.+.|++++|+| ++++|++|+.||+|++||+.+ +. ....+.
T Consensus 50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~-------------------- 109 (437)
T 3gre_A 50 LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD-------------------- 109 (437)
T ss_dssp CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE--------------------
T ss_pred ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeecc--------------------
Confidence 456888889 99999999999999 999999999999999999876 33 112222
Q ss_pred CcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEecc---CCCCcceeeEEEec------------Cc-ceEEEE--
Q 041206 156 NAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVWKGT---FVANPFKQVASIRA------------PL-WFCSLS-- 215 (371)
Q Consensus 156 ~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~---~~~~~~~~~~~~~~------------~~-~v~~~~-- 215 (371)
|...|.+++|+|+ +|++++.||.|++||+. .+ +....+.. +. .+.++.
T Consensus 110 --------h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 177 (437)
T 3gre_A 110 --------CSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQE----SEVKFLNCECIRKINLKNFGKNEYAVRMRAF 177 (437)
T ss_dssp --------CSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEET----TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEE
T ss_pred --------CCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCC----ceeeccccceeEEEEccCcccccCceEEEEE
Confidence 5567999999987 99999999999999995 33 23332222 22 455555
Q ss_pred ecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeec--CCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcc
Q 041206 216 SSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKG--HSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNA 290 (371)
Q Consensus 216 ~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~ 290 (371)
+++++. ++++ +.|+.|++||+++++++..+.. |...|++++|+ +++|++++.||.|++||++..+...
T Consensus 178 ~~~~~~~l~~~-------~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 250 (437)
T 3gre_A 178 VNEEKSLLVAL-------TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIR 250 (437)
T ss_dssp ECSSCEEEEEE-------ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred EcCCCCEEEEE-------eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEE
Confidence 445665 7888 9999999999999999999998 89999999998 6899999999999999988755322
Q ss_pred e-----ecceEEEE----ecCCCCEEEEecCCCeEEEEEcCCcceeeeec---------------------------CCc
Q 041206 291 E-----LSSLFGML----DAEAKPVLFSSGKDSAIRLYELPSFKLRARIF---------------------------SRR 334 (371)
Q Consensus 291 ~-----~~~~~~~~----~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---------------------------~~~ 334 (371)
. ...+..+. +.+++.+|++++.|+.|++||+++++.+..+. +..
T Consensus 251 ~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 330 (437)
T 3gre_A 251 SWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLN 330 (437)
T ss_dssp EEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGG
T ss_pred EEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCC
Confidence 1 12344442 22455699999999999999999988766655 345
Q ss_pred eEEEEEeCCCC-eEEeeCCCCcEEEEEcccccee
Q 041206 335 EVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 335 ~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~ 367 (371)
.|++++|+ ++ +|++|+.||.|++||+.+++..
T Consensus 331 ~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~ 363 (437)
T 3gre_A 331 ALSTISVS-NDKILLTDEATSSIVMFSLNELSSS 363 (437)
T ss_dssp GGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGC
T ss_pred ceEEEEEC-CceEEEecCCCCeEEEEECCCcccc
Confidence 68899999 66 9999999999999999887643
No 80
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.8e-32 Score=249.44 Aligned_cols=269 Identities=17% Similarity=0.287 Sum_probs=219.4
Q ss_pred ceeeEeeeCccCCe-EEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC-CCeeEEEeec-CCEEEE-ecCCcEEEE
Q 041206 86 LATLMKLNGHKKAV-TNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN-GAEIGCLISE-GSWVFL-GLPNAVKSW 161 (371)
Q Consensus 86 ~~~~~~l~~h~~~V-~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~-~~~~~i~~~ 161 (371)
......+++|...| .++.+ ++++|++|+.||+|++||+.+++.+..+.. ...+.++.+. +.++++ +.|+.|++|
T Consensus 111 ~~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 111 VPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVW 188 (464)
T ss_dssp CCEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEE
T ss_pred CcceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEE
Confidence 34667899999885 66666 467999999999999999999999998874 5678888764 335554 679999999
Q ss_pred EeCCC-----------CeeEEEEeC--C--EEEEEeCCCeEEEEeccCCCCcce-------------------eeEEEec
Q 041206 162 RVNAA-----------SVNALVVNN--D--LLFAGSEGGVISVWKGTFVANPFK-------------------QVASIRA 207 (371)
Q Consensus 162 ~~~~~-----------~v~~~~~~~--~--~l~~~~~dg~v~iwd~~~~~~~~~-------------------~~~~~~~ 207 (371)
|+.++ .|.++++.+ + ++++++.||.|++||+.+...... ....+.+
T Consensus 189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 98655 788999874 3 899999999999999987642211 2556777
Q ss_pred Cc-ceEEEEecCCc-eeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEc
Q 041206 208 PL-WFCSLSSSNDT-RWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLY 283 (371)
Q Consensus 208 ~~-~v~~~~~~~~~-~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~ 283 (371)
|. .+.++. +++ .++++ +.|+.|++||+++++++..+.+|...|.+++|+ ++++++++.|+.|++||+
T Consensus 269 ~~~~v~~~~--~~~~~l~~~-------~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~ 339 (464)
T 3v7d_B 269 HMASVRTVS--GHGNIVVSG-------SYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339 (464)
T ss_dssp CSSCEEEEE--EETTEEEEE-------ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred ccceEEEEc--CCCCEEEEE-------eCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence 77 888774 444 48888 999999999999999999999999999999998 679999999999999998
Q ss_pred cCCCCc----ceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCCCCcEEE
Q 041206 284 THTKNN----AELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDASGSVGV 358 (371)
Q Consensus 284 ~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~i 358 (371)
+..+.. .+...+..+.+. +.++++++.||.|++||+.++.......+...+..++|+|++ ++++|+ ||.|++
T Consensus 340 ~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~i 416 (464)
T 3v7d_B 340 ENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNI 416 (464)
T ss_dssp TTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEE
T ss_pred CCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEE
Confidence 766532 222334444444 358999999999999999998888877778888999999999 888887 899999
Q ss_pred EEccccceec
Q 041206 359 WKWLLAEQQK 368 (371)
Q Consensus 359 w~~~~~~~~~ 368 (371)
||+.+++...
T Consensus 417 wd~~~g~~~~ 426 (464)
T 3v7d_B 417 YNLRSGKLVH 426 (464)
T ss_dssp EETTTCCEEE
T ss_pred EECCCCcEEe
Confidence 9999887654
No 81
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=250.06 Aligned_cols=256 Identities=10% Similarity=0.203 Sum_probs=197.6
Q ss_pred CccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------eEEEEeCC-------------CeeEEEeec--C
Q 041206 94 GHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGR-----------CVNVITNG-------------AEIGCLISE--G 147 (371)
Q Consensus 94 ~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-----------~~~~~~~~-------------~~~~~~~~~--~ 147 (371)
.|.+.|++++|+|++++||+|+.||.|+|||+.+++ ....+..+ ..+.++.+. +
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 368999999999999999999999999999999877 46666654 557777653 3
Q ss_pred --CEE-EEecCCcEEEEEeC---------------------------------------------------CCCeeEEEE
Q 041206 148 --SWV-FLGLPNAVKSWRVN---------------------------------------------------AASVNALVV 173 (371)
Q Consensus 148 --~~~-~~~~~~~i~~~~~~---------------------------------------------------~~~v~~~~~ 173 (371)
..+ .++.|+.|++|++. ...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 344 44679999999963 347899999
Q ss_pred eCC--EEEEEeCCCeEEEEeccCCCCcceeeE-------EEecCc-ceEEEEecCCc-e-eEecccceeeeeCCCeEEEE
Q 041206 174 NND--LLFAGSEGGVISVWKGTFVANPFKQVA-------SIRAPL-WFCSLSSSNDT-R-WNSKEEAAVFEFCGHTTRTW 241 (371)
Q Consensus 174 ~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~-------~~~~~~-~v~~~~~~~~~-~-l~~~~~~~~~~~~dg~i~iw 241 (371)
+|+ +|++| .|+.|++||+.... +... .+..|. .|.+++|+|++ . ++++ +.||.|++|
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-------~~dg~i~iw 254 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITD---RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS-------SSKGTIRLC 254 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEE---EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEE-------ETTSCEEEE
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCC---ceeeeeecccccccccCcceEEEEECCCCCcEEEEE-------eCCCeEEEE
Confidence 998 88888 89999999998541 3333 245777 89999999997 4 8999 999999999
Q ss_pred ECCCceE----EEEeecCCC------------cEEEEEEc--CCeEEEEeCCCcEEEEEccC-CCCcceecc--------
Q 041206 242 NLDNLEC----VQTLKGHSD------------TVTSLLFW--DEYLFSSSLDETIKIWLYTH-TKNNAELSS-------- 294 (371)
Q Consensus 242 d~~~~~~----~~~~~~~~~------------~v~~~~~~--~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~-------- 294 (371)
|+++++. +..+..|.. .|.+++|+ +++|++++. +.|++||++. .+....+..
T Consensus 255 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l 333 (447)
T 3dw8_B 255 DMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKL 333 (447)
T ss_dssp ETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTH
T ss_pred ECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccc
Confidence 9999886 788888876 89999999 679999988 9999999986 433221110
Q ss_pred -----------eEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeee---------------------------------
Q 041206 295 -----------LFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARI--------------------------------- 330 (371)
Q Consensus 295 -----------~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--------------------------------- 330 (371)
+..+.+.+++.+|++++.||.|++||+.+++.+...
T Consensus 334 ~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (447)
T 3dw8_B 334 CSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSL 413 (447)
T ss_dssp HHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGC
T ss_pred cccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccccccccccc
Confidence 111345555669999999999999999988765311
Q ss_pred cCCceEEEEEeCCCC-eEEeeCCCCcEEEEEcc
Q 041206 331 FSRREVEVDQIGPAG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 331 ~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~ 362 (371)
.....|..++|+|++ .||+++.++ +++|.-+
T Consensus 414 ~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 414 DFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred ccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 124568899999999 888888775 8888643
No 82
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=7.3e-33 Score=245.04 Aligned_cols=284 Identities=11% Similarity=0.128 Sum_probs=223.4
Q ss_pred cccccceeEEEEEeeccceeeeeeeecc---eeeccceeeCCccceEEEEEeccCCCCccC-CceeeEeeeCccCCeEEE
Q 041206 27 DDLMKGRAEEREEMFGFGLAAMAIRVCN---NWISDSCVYGDKCRFLHSWVHSVDGDNTTN-SLATLMKLNGHKKAVTNV 102 (371)
Q Consensus 27 ~d~~~~~~~~~~~~h~~~v~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~l~~h~~~V~~~ 102 (371)
++....+.+..+.+|.+.|.+++++|.. .++ ..++.++.+++|+. .. .......+.+|...|+++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l----~~~~~dg~i~iw~~-------~~~~~~~~~~~~~h~~~v~~~ 92 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFL----IAGSWANDVRCWEV-------QDSGQTIPKAQQMHTGPVLDV 92 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEE----EEEETTSEEEEEEE-------CTTSCEEEEEEEECSSCEEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEE----EEECCCCcEEEEEc-------CCCCceeEEEeccccCCEEEE
Confidence 3355677788899999999999999973 332 23567889999993 33 334448899999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEE--eCC--EE
Q 041206 103 GLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVV--NND--LL 178 (371)
Q Consensus 103 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~--~~~--~l 178 (371)
+|+|++++|++++.||.|++||+.+++.+.... +...|.+++| +++ ++
T Consensus 93 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~----------------------------~~~~v~~~~~~~~~~~~~l 144 (368)
T 3mmy_A 93 CWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ----------------------------HDAPVKTIHWIKAPNYSCV 144 (368)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----------------------------CSSCEEEEEEEECSSCEEE
T ss_pred EECcCCCEEEEEcCCCcEEEEEcCCCCceeecc----------------------------ccCceEEEEEEeCCCCCEE
Confidence 999999999999999999999999988776544 4456899999 666 79
Q ss_pred EEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEe--ecCC
Q 041206 179 FAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTL--KGHS 256 (371)
Q Consensus 179 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~--~~~~ 256 (371)
++++.||.|++||++++ +.+..+..+..+.++.+.++ .++++ +.++.+++||++........ ..+.
T Consensus 145 ~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~ 212 (368)
T 3mmy_A 145 MTGSWDKTLKFWDTRSS----NPMMVLQLPERCYCADVIYP-MAVVA-------TAERGLIVYQLENQPSEFRRIESPLK 212 (368)
T ss_dssp EEEETTSEEEEECSSCS----SCSEEEECSSCEEEEEEETT-EEEEE-------EGGGCEEEEECSSSCEEEEECCCSCS
T ss_pred EEccCCCcEEEEECCCC----cEEEEEecCCCceEEEecCC-eeEEE-------eCCCcEEEEEeccccchhhhcccccc
Confidence 99999999999999988 77778887777777877764 56667 88999999999876543222 1233
Q ss_pred CcEEEEEEc--CC----eEEEEeCCCcEEEEEccCCCC-------cceec------------ceEEEEecCCCCEEEEec
Q 041206 257 DTVTSLLFW--DE----YLFSSSLDETIKIWLYTHTKN-------NAELS------------SLFGMLDAEAKPVLFSSG 311 (371)
Q Consensus 257 ~~v~~~~~~--~~----~l~s~~~dg~i~iwd~~~~~~-------~~~~~------------~~~~~~~~~~~~~l~~~~ 311 (371)
..+.++.+. +. .+++++.|+.|++||++.... ..+.. .+..+.+.+++.+|++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 292 (368)
T 3mmy_A 213 HQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292 (368)
T ss_dssp SCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE
T ss_pred CCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc
Confidence 445555543 33 399999999999999887632 11111 466666777777999999
Q ss_pred CCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEc
Q 041206 312 KDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKW 361 (371)
Q Consensus 312 ~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~ 361 (371)
.||.|++||+.+++++..+. +..+|++++|+|++ +|++++.|+..+.|++
T Consensus 293 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 293 SDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp TTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred cCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccc
Confidence 99999999999999888877 58899999999999 9999998876555554
No 83
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=9.5e-33 Score=247.94 Aligned_cols=266 Identities=17% Similarity=0.157 Sum_probs=207.3
Q ss_pred CCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEE
Q 041206 64 GDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPS-GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGC 142 (371)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 142 (371)
++.++.|.+|+....+ ...+.+..+.+|.+.|++++|+| ++++|++|+.||+|++||+.++.......
T Consensus 53 ~~~~g~i~v~~~~~~~----~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~------- 121 (402)
T 2aq5_A 53 ASGGGAFLVLPLGKTG----RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR------- 121 (402)
T ss_dssp CSSSCCEEEEETTCCE----ECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBC-------
T ss_pred EcCCCEEEEEECccCC----CCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccC-------
Confidence 5678899999932111 11134667889999999999999 99999999999999999999874321110
Q ss_pred EeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEE--ecCc-ceEEEEe
Q 041206 143 LISEGSWVFLGLPNAVKSWRVNAASVNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASI--RAPL-WFCSLSS 216 (371)
Q Consensus 143 ~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~~~-~v~~~~~ 216 (371)
..+..+..|...|.+++|+|+ ++++++.||.|++||+.++ +....+ ..|. .|.+++|
T Consensus 122 -------------~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~ 184 (402)
T 2aq5_A 122 -------------EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG----AAVLTLGPDVHPDTIYSVDW 184 (402)
T ss_dssp -------------SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT----EEEEEECTTTCCSCEEEEEE
T ss_pred -------------CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC----CccEEEecCCCCCceEEEEE
Confidence 112223346668999999987 8999999999999999998 788888 7788 9999999
Q ss_pred cCCce-eEecccceeeeeCCCeEEEEECCCceEEEEe-ecCCCc-EEEEEEc--CCeEEEE---eCCCcEEEEEccCCCC
Q 041206 217 SNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTL-KGHSDT-VTSLLFW--DEYLFSS---SLDETIKIWLYTHTKN 288 (371)
Q Consensus 217 ~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~-v~~~~~~--~~~l~s~---~~dg~i~iwd~~~~~~ 288 (371)
+|++. ++++ +.|+.|++||+++++.+..+ ..|.+. +.++.|+ +.+|+++ +.|+.|++||++....
T Consensus 185 ~~~~~~l~~~-------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~ 257 (402)
T 2aq5_A 185 SRDGALICTS-------CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE 257 (402)
T ss_dssp CTTSSCEEEE-------ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred CCCCCEEEEE-------ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC
Confidence 99986 8899 99999999999999999988 688776 8999998 5678888 7999999999887553
Q ss_pred c------ceecceEEEEecCCCCEEE-EecCCCeEEEEEcCCcce----eeeecCCceEEEEEeCCCC-eEEeeCCCCcE
Q 041206 289 N------AELSSLFGMLDAEAKPVLF-SSGKDSAIRLYELPSFKL----RARIFSRREVEVDQIGPAG-LFFPGDASGSV 356 (371)
Q Consensus 289 ~------~~~~~~~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~----~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i 356 (371)
. .....+..+.+.+++.+++ +++.|+.|++||+.+++. +..+.+..+|.+++|+|++ ++++ .++.+
T Consensus 258 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~ 335 (402)
T 2aq5_A 258 PLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIA 335 (402)
T ss_dssp CSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEE
T ss_pred CceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeE
Confidence 1 1122344455555555664 667899999999998873 3333356899999999999 6654 46699
Q ss_pred EEEEccccce
Q 041206 357 GVWKWLLAEQ 366 (371)
Q Consensus 357 ~iw~~~~~~~ 366 (371)
++|++.++..
T Consensus 336 ~~~~l~~~~~ 345 (402)
T 2aq5_A 336 RFYKLHERKC 345 (402)
T ss_dssp EEEEEETTEE
T ss_pred EEEEcCCCcE
Confidence 9999987544
No 84
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.8e-32 Score=241.72 Aligned_cols=245 Identities=16% Similarity=0.190 Sum_probs=199.7
Q ss_pred CCceeeEeeeCccCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEE
Q 041206 84 NSLATLMKLNGHKKAVTNVGLPSGS-NKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWR 162 (371)
Q Consensus 84 ~~~~~~~~l~~h~~~V~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 162 (371)
...+....+.+|.+.|++++|+|++ ++|++|+.||.|++||+.+++....+...
T Consensus 61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------------- 115 (383)
T 3ei3_B 61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGM------------------------- 115 (383)
T ss_dssp TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCC-------------------------
T ss_pred cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecC-------------------------
Confidence 4567788999999999999999998 99999999999999999988877666521
Q ss_pred eCCCCeeEEEEeC-C--EEEEEeCCCeEEEEeccCCCCcceeeEEEe---cCc-ceEEEEecCCce-eEecccceeeeeC
Q 041206 163 VNAASVNALVVNN-D--LLFAGSEGGVISVWKGTFVANPFKQVASIR---APL-WFCSLSSSNDTR-WNSKEEAAVFEFC 234 (371)
Q Consensus 163 ~~~~~v~~~~~~~-~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~ 234 (371)
.|...|.+++|+| + ++++++.|+.|++||+... ....+. .+. .|.+++|+|++. ++++ +.
T Consensus 116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-------~~ 183 (383)
T 3ei3_B 116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS-----VIQVFAKTDSWDYWYCCVDVSVSRQMLATG-------DS 183 (383)
T ss_dssp STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC-----EEEEEECCCCSSCCEEEEEEETTTTEEEEE-------ET
T ss_pred CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC-----ceEEEeccCCCCCCeEEEEECCCCCEEEEE-------CC
Confidence 1455799999999 3 9999999999999999863 333443 334 799999999986 8899 99
Q ss_pred CCeEEEEECCCceEEEEeecCCCcEEEEEEc--CC-eEEEEeCCCcEEEEEccCCCCc-------ceecceEEEEecC-C
Q 041206 235 GHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DE-YLFSSSLDETIKIWLYTHTKNN-------AELSSLFGMLDAE-A 303 (371)
Q Consensus 235 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~-------~~~~~~~~~~~~~-~ 303 (371)
|+.|++||+ +++++..+.+|...|.+++|+ ++ +|++++.|+.|++||++..+.. .+...+..+.+.+ +
T Consensus 184 d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 262 (383)
T 3ei3_B 184 TGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262 (383)
T ss_dssp TSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTT
T ss_pred CCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCC
Confidence 999999999 578889999999999999999 44 8999999999999999874321 1223556666666 7
Q ss_pred CCEEEEecCCCeEEEEEcCCcceeeeec-C-----------------CceEEEEEeCCCCeEEeeCCCCcEEEEEccccc
Q 041206 304 KPVLFSSGKDSAIRLYELPSFKLRARIF-S-----------------RREVEVDQIGPAGLFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 304 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~-----------------~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~~~~ 365 (371)
+.+|++++.|+.|++||+++++....+. + ...+..++|+|++.+ +|+.||.|++||+.+++
T Consensus 263 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~ 341 (383)
T 3ei3_B 263 STKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGG 341 (383)
T ss_dssp SCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCC
T ss_pred CCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCc
Confidence 7799999999999999999877655543 1 245566788888833 88999999999998776
Q ss_pred ee
Q 041206 366 QQ 367 (371)
Q Consensus 366 ~~ 367 (371)
..
T Consensus 342 ~~ 343 (383)
T 3ei3_B 342 LV 343 (383)
T ss_dssp EE
T ss_pred ee
Confidence 54
No 85
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-32 Score=235.16 Aligned_cols=246 Identities=19% Similarity=0.240 Sum_probs=205.3
Q ss_pred cCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEE
Q 041206 83 TNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWR 162 (371)
Q Consensus 83 ~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 162 (371)
....++++++++|.+.|++++| |++++|++++.||.|++||+.+++....+..
T Consensus 5 ~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~-------------------------- 57 (313)
T 3odt_A 5 FTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYT-------------------------- 57 (313)
T ss_dssp CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEE--------------------------
T ss_pred cccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeec--------------------------
Confidence 3456889999999999999999 9999999999999999999988877666553
Q ss_pred eCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEE
Q 041206 163 VNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTR 239 (371)
Q Consensus 163 ~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~ 239 (371)
+...|.+++|+|+ ++++++.||.|++|++...... +....+..|. .|.+++|.+ ..++++ +.|+.|+
T Consensus 58 -~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~-~~l~~~-------~~d~~i~ 127 (313)
T 3odt_A 58 -GQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGE-DPLYTLIGHQGNVCSLSFQD-GVVISG-------SWDKTAK 127 (313)
T ss_dssp -CSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTS-CC-CEECCCSSCEEEEEEET-TEEEEE-------ETTSEEE
T ss_pred -CCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCC-CcccchhhcccCEEEEEecC-CEEEEE-------eCCCCEE
Confidence 4557999999998 9999999999999998775322 4567788888 999999943 468899 9999999
Q ss_pred EEECCCceEEEEeecCCCcEEEEEEc---CCeEEEEeCCCcEEEEEccCCCC---cceecceEEEEecCCCCEEEEecCC
Q 041206 240 TWNLDNLECVQTLKGHSDTVTSLLFW---DEYLFSSSLDETIKIWLYTHTKN---NAELSSLFGMLDAEAKPVLFSSGKD 313 (371)
Q Consensus 240 iwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~d 313 (371)
+|| .++.+..+..|...+.++.|. ++++++++.|+.|++||...... ......+..+.+.+++. +++++.|
T Consensus 128 ~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d 204 (313)
T 3odt_A 128 VWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSND 204 (313)
T ss_dssp EEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETT
T ss_pred EEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCC
Confidence 999 678888999999999999986 68999999999999999433221 11223455555656663 8999999
Q ss_pred CeEEEEEcCCcceeeeec-CCceEEEEEeCCCCeEEeeCCCCcEEEEEccccceec
Q 041206 314 SAIRLYELPSFKLRARIF-SRREVEVDQIGPAGLFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 314 ~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
+.|++||+++++++..+. +...|++++|+|++.|++++.||.|++||+.+++...
T Consensus 205 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 260 (313)
T 3odt_A 205 GLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQ 260 (313)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEE
T ss_pred CeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeE
Confidence 999999999999888887 6889999999999988899999999999998876543
No 86
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-31 Score=236.78 Aligned_cols=244 Identities=15% Similarity=0.219 Sum_probs=207.2
Q ss_pred CceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeC
Q 041206 85 SLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVN 164 (371)
Q Consensus 85 ~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 164 (371)
.......+.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+.. |
T Consensus 21 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---------------------------h 73 (369)
T 3zwl_B 21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDG---------------------------H 73 (369)
T ss_dssp CSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECC---------------------------C
T ss_pred cccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhh---------------------------c
Confidence 3445667999999999999999999999999999999999999998887764 4
Q ss_pred CCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCC-----
Q 041206 165 AASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCG----- 235 (371)
Q Consensus 165 ~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~d----- 235 (371)
...|.+++|+|+ +|++++.||.|++||+.++ +.+..+. +. .+.+++|+|++. ++++ +.+
T Consensus 74 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~-~~~~v~~~~~~~~~~~l~~~-------~~~~~~~~ 141 (369)
T 3zwl_B 74 TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG----QCVATWK-SPVPVKRVEFSPCGNYFLAI-------LDNVMKNP 141 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTC----CEEEEEE-CSSCEEEEEECTTSSEEEEE-------ECCBTTBC
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----cEEEEee-cCCCeEEEEEccCCCEEEEe-------cCCccCCC
Confidence 557999999987 9999999999999999988 7777777 55 999999999986 7777 777
Q ss_pred CeEEEEECCCce-----------EEEEeecCCC--cEEEEEEc--CCeEEEEeCCCcEEEEEccCC-CC----cceecce
Q 041206 236 HTTRTWNLDNLE-----------CVQTLKGHSD--TVTSLLFW--DEYLFSSSLDETIKIWLYTHT-KN----NAELSSL 295 (371)
Q Consensus 236 g~i~iwd~~~~~-----------~~~~~~~~~~--~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~-~~----~~~~~~~ 295 (371)
+.|++||++... .+..+..|.. .+.+++|+ +++|++++.||.|++||++.. .. ..+...+
T Consensus 142 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 221 (369)
T 3zwl_B 142 GSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSI 221 (369)
T ss_dssp CEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCE
T ss_pred CEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCce
Confidence 999999997643 3445566666 99999998 679999999999999999873 32 1122355
Q ss_pred EEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCCCC--------------cEEEEE
Q 041206 296 FGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDASG--------------SVGVWK 360 (371)
Q Consensus 296 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg--------------~i~iw~ 360 (371)
..+.+.+++.+|++++.|+.|++||+++++.+..+.+...+..++|+|++ .+++++.++ .+++|+
T Consensus 222 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d 301 (369)
T 3zwl_B 222 SDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYH 301 (369)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEE
T ss_pred eEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEe
Confidence 66667777779999999999999999999999998889999999999999 899888888 899999
Q ss_pred cccccee
Q 041206 361 WLLAEQQ 367 (371)
Q Consensus 361 ~~~~~~~ 367 (371)
+.+++..
T Consensus 302 ~~~~~~~ 308 (369)
T 3zwl_B 302 KIFEEEI 308 (369)
T ss_dssp TTTCCEE
T ss_pred cCCCcch
Confidence 9876543
No 87
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1e-31 Score=235.59 Aligned_cols=253 Identities=11% Similarity=0.115 Sum_probs=210.4
Q ss_pred eeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----eEEEEeCCCeeEEEee--cCC-EEEE-ecCCcEE
Q 041206 88 TLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGR----CVNVITNGAEIGCLIS--EGS-WVFL-GLPNAVK 159 (371)
Q Consensus 88 ~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~--~~~-~~~~-~~~~~i~ 159 (371)
.+....+|.+.|++++|+|++++|++++.||.|++||+.+++ ......+...+.++.+ ++. ++++ +.++.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred ceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 345567899999999999999999999999999999999887 5555666677877764 577 6665 5689999
Q ss_pred EEEe-------------CCCCeeEEEEeCC-EEEEEeCCCeEEEEeccC---------CCCcceeeEEEecCc-ceEEEE
Q 041206 160 SWRV-------------NAASVNALVVNND-LLFAGSEGGVISVWKGTF---------VANPFKQVASIRAPL-WFCSLS 215 (371)
Q Consensus 160 ~~~~-------------~~~~v~~~~~~~~-~l~~~~~dg~v~iwd~~~---------~~~~~~~~~~~~~~~-~v~~~~ 215 (371)
+|++ |...|.+++|+|. .+++++.|+.|++||+++ . +++..+. +. .+.+++
T Consensus 83 ~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~-~~~~v~~~~ 157 (342)
T 1yfq_A 83 KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKN----LNSNNTK-VKNKIFTMD 157 (342)
T ss_dssp EECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEE----SCSSSSS-SCCCEEEEE
T ss_pred EEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccC----CeeeEEe-eCCceEEEE
Confidence 9999 6778999999965 999999999999999987 5 4454555 56 999999
Q ss_pred ecCCceeEecccceeeeeCCCeEEEEECCC-ce--EEEEeecCCCcEEEEEEcC---CeEEEEeCCCcEEEEEccCC---
Q 041206 216 SSNDTRWNSKEEAAVFEFCGHTTRTWNLDN-LE--CVQTLKGHSDTVTSLLFWD---EYLFSSSLDETIKIWLYTHT--- 286 (371)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~-~~--~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~~--- 286 (371)
|+|++ ++++ +.|+.|++||+++ +. .......|...|.+++|++ +++++++.||.|++|++...
T Consensus 158 ~~~~~-l~~~-------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~ 229 (342)
T 1yfq_A 158 TNSSR-LIVG-------MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD 229 (342)
T ss_dssp ECSSE-EEEE-------ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCS
T ss_pred ecCCc-EEEE-------eCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcc
Confidence 99987 8888 9999999999998 44 3334457888999999975 79999999999999998776
Q ss_pred ---CCcc----e---------ecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-C-CceEEEEEeCCCC-eE
Q 041206 287 ---KNNA----E---------LSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-S-RREVEVDQIGPAG-LF 347 (371)
Q Consensus 287 ---~~~~----~---------~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~-~~~v~~~~~s~~~-~l 347 (371)
.... + ...+..+.+.+++.+|++++.||.|++||+.+++.+..+. + ..+|.+++ |++ +|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l 307 (342)
T 1yfq_A 230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNIL 307 (342)
T ss_dssp TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEE
T ss_pred cccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeE
Confidence 2211 1 1156666666677799999999999999999999888877 4 78999999 999 99
Q ss_pred EeeCCCCc
Q 041206 348 FPGDASGS 355 (371)
Q Consensus 348 ~~~~~dg~ 355 (371)
++++.||.
T Consensus 308 ~s~s~Dg~ 315 (342)
T 1yfq_A 308 CLATSDDT 315 (342)
T ss_dssp EEEEECTH
T ss_pred EEEecCCc
Confidence 99999998
No 88
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-33 Score=255.14 Aligned_cols=240 Identities=12% Similarity=0.031 Sum_probs=178.8
Q ss_pred ccCCeEEEEEcCCC---------CEEEE-------------------EeCCCcEEEEECCCCceEEEEeCCCeeEEEeec
Q 041206 95 HKKAVTNVGLPSGS---------NKLYS-------------------GSRDGRVSVWDRDSGRCVNVITNGAEIGCLISE 146 (371)
Q Consensus 95 h~~~V~~~~~~~~~---------~~l~s-------------------~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 146 (371)
+.+.|.+|+|+|++ ++||+ ++.|++|+|||+.+++......
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~----------- 200 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKV----------- 200 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEE-----------
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEE-----------
Confidence 45667777777654 45555 5577888999887765321100
Q ss_pred CCEEEEecCCcEEEEEeCCCCeeEEEEeCC--------EEEEEeCCCeEEEEeccCCCCc-------ceeeEEEecCc-c
Q 041206 147 GSWVFLGLPNAVKSWRVNAASVNALVVNND--------LLFAGSEGGVISVWKGTFVANP-------FKQVASIRAPL-W 210 (371)
Q Consensus 147 ~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--------~l~~~~~dg~v~iwd~~~~~~~-------~~~~~~~~~~~-~ 210 (371)
.....+.+.|.+++|+|+ +|++++.||+|++||+..+... .++...+.+|. .
T Consensus 201 ------------~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~ 268 (524)
T 2j04_B 201 ------------QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSL 268 (524)
T ss_dssp ------------EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTC
T ss_pred ------------EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCC
Confidence 001124557999999873 8999999999999999865321 12345678888 9
Q ss_pred eEEEEecCCceeEecccceeeeeCCCeEEEEECCCc-eEEEEeecCCCcEEEE--EEc--C-CeEEEEeCCCcEEEEEcc
Q 041206 211 FCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNL-ECVQTLKGHSDTVTSL--LFW--D-EYLFSSSLDETIKIWLYT 284 (371)
Q Consensus 211 v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~--~~~--~-~~l~s~~~dg~i~iwd~~ 284 (371)
|++++|++++.|++| +.||+|++||++++ .+...+.+|...|.++ .|+ + ++|+|++.|++|+|||++
T Consensus 269 v~sv~~s~~~~lasg-------s~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~ 341 (524)
T 2j04_B 269 ITTFDFLSPTTVVCG-------FKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPK 341 (524)
T ss_dssp EEEEEESSSSEEEEE-------ETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGG
T ss_pred EEEEEecCCCeEEEE-------eCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECC
Confidence 999999998789999 99999999999976 4456788999999999 455 4 689999999999999987
Q ss_pred CCCCcc----ee--cceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcE
Q 041206 285 HTKNNA----EL--SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSV 356 (371)
Q Consensus 285 ~~~~~~----~~--~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i 356 (371)
..+... +. ..+..+.+.+++..+++++.|++|++||++++.++..+. |.+.|++++|+|++ .|++|+.||+|
T Consensus 342 ~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv 421 (524)
T 2j04_B 342 DIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSL 421 (524)
T ss_dssp GHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEE
T ss_pred CCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEE
Confidence 654211 11 113333445555589999999999999999988766554 78899999999999 99999999999
Q ss_pred EEEEcccc
Q 041206 357 GVWKWLLA 364 (371)
Q Consensus 357 ~iw~~~~~ 364 (371)
++|++...
T Consensus 422 ~lwd~~~~ 429 (524)
T 2j04_B 422 IITNAARR 429 (524)
T ss_dssp ECCBSCSS
T ss_pred EEEechHh
Confidence 99997643
No 89
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1e-31 Score=243.79 Aligned_cols=276 Identities=17% Similarity=0.209 Sum_probs=208.5
Q ss_pred ccCCCCceeeccCcc-------cccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCc
Q 041206 14 KHSEGGETMMSDDDD-------LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSL 86 (371)
Q Consensus 14 ~~sp~g~~l~~~~~d-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (371)
.++++|+++++++.| ...++.+..+.+|...|.++++.. .. ...++.++.|++|+ ..++
T Consensus 138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~-~~-----l~sg~~dg~i~vwd--------~~~~ 203 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE-RV-----IITGSSDSTVRVWD--------VNTG 203 (435)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCS-SE-----EEEEETTSCEEEEE--------SSSC
T ss_pred EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECC-CE-----EEEEcCCCeEEEEE--------CCCC
Confidence 467899999999877 457888999999999999998832 22 23467889999999 4566
Q ss_pred eeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCC
Q 041206 87 ATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAA 166 (371)
Q Consensus 87 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 166 (371)
+.+..+.+|...|.+++|++ .+|++|+.||.|++||+.+++...... ....|..
T Consensus 204 ~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~------------------------~~~~~~~ 257 (435)
T 1p22_A 204 EMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRR------------------------VLVGHRA 257 (435)
T ss_dssp CEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEE------------------------EECCCSS
T ss_pred cEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeee------------------------EecCCCC
Confidence 88999999999999999974 599999999999999998876542111 1112555
Q ss_pred CeeEEEEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCC
Q 041206 167 SVNALVVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDN 245 (371)
Q Consensus 167 ~v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~ 245 (371)
.|.+++++++++++|+.||.|++||++++ +.+..+..|. .|.++.+++ ..+++| +.||.|++||+++
T Consensus 258 ~v~~~~~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~-~~l~~g-------~~dg~i~iwd~~~ 325 (435)
T 1p22_A 258 AVNVVDFDDKYIVSASGDRTIKVWNTSTC----EFVRTLNGHKRGIACLQYRD-RLVVSG-------SSDNTIRLWDIEC 325 (435)
T ss_dssp CEEEEEEETTEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEEET-TEEEEE-------ETTSCEEEEETTT
T ss_pred cEEEEEeCCCEEEEEeCCCeEEEEECCcC----cEEEEEcCCCCcEEEEEeCC-CEEEEE-------eCCCeEEEEECCC
Confidence 79999998889999999999999999998 7888999999 999999953 468899 9999999999999
Q ss_pred ceEEEEeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCC-------------cceecceEEEEecCCCCEEEEecC
Q 041206 246 LECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKN-------------NAELSSLFGMLDAEAKPVLFSSGK 312 (371)
Q Consensus 246 ~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~ 312 (371)
++++..+.+|...|.+++|++++|++++.||.|++||+..... ..+...+..+.+ ++.+|++++.
T Consensus 326 ~~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~ 403 (435)
T 1p22_A 326 GACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSH 403 (435)
T ss_dssp CCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCS
T ss_pred CCEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeC
Confidence 9999999999999999999999999999999999999765431 111123333333 3457999999
Q ss_pred CCeEEEEEcCCcceeeeecCCceEEEEEeCC
Q 041206 313 DSAIRLYELPSFKLRARIFSRREVEVDQIGP 343 (371)
Q Consensus 313 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~ 343 (371)
||.|++||+.+...........+..++.|.+
T Consensus 404 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 434 (435)
T 1p22_A 404 DDTILIWDFLNDPAAQAEPPRSPSRTYTYIS 434 (435)
T ss_dssp SSEEEEEC-----------------------
T ss_pred CCEEEEEECCCCCCcccCCCCCCccceeeec
Confidence 9999999999877666655566666666654
No 90
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.6e-33 Score=247.73 Aligned_cols=236 Identities=10% Similarity=0.034 Sum_probs=184.9
Q ss_pred eeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCe
Q 041206 91 KLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSG--RCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASV 168 (371)
Q Consensus 91 ~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v 168 (371)
.++.|.++|++++|+|++++|++|+.|+.|++||+.++ +.+..+.. |...|
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~---------------------------h~~~v 58 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSD---------------------------HDKIV 58 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCC---------------------------CSSCE
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEec---------------------------CCceE
Confidence 34557789999999999999999999999999999987 44444443 55679
Q ss_pred eEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECC
Q 041206 169 NALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLD 244 (371)
Q Consensus 169 ~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~ 244 (371)
.+++|+|+ +|++++.|+.|++||+.++. .......+..|. .|.+++|+|+++ ++++ +.|+.|++||++
T Consensus 59 ~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-------~~d~~i~iwd~~ 130 (377)
T 3dwl_C 59 TCVDWAPKSNRIVTCSQDRNAYVYEKRPDG-TWKQTLVLLRLNRAATFVRWSPNEDKFAVG-------SGARVISVCYFE 130 (377)
T ss_dssp EEEEECTTTCCEEEEETTSSEEEC-------CCCCEEECCCCSSCEEEEECCTTSSCCEEE-------ESSSCEEECCC-
T ss_pred EEEEEeCCCCEEEEEeCCCeEEEEEcCCCC-ceeeeeEecccCCceEEEEECCCCCEEEEE-------ecCCeEEEEEEC
Confidence 99999997 99999999999999999873 113566777888 999999999986 8999 999999999999
Q ss_pred Cce---EEEEeec-CCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC---------------------cceecceEE
Q 041206 245 NLE---CVQTLKG-HSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN---------------------NAELSSLFG 297 (371)
Q Consensus 245 ~~~---~~~~~~~-~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~---------------------~~~~~~~~~ 297 (371)
+++ ....+.. |...|.+++|+ +++|++++.|+.|++||+..... ..+...+..
T Consensus 131 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 210 (377)
T 3dwl_C 131 QENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHA 210 (377)
T ss_dssp ----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEE
T ss_pred CcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEE
Confidence 887 3677877 99999999998 57999999999999999853221 022234566
Q ss_pred EEecCCCCEEEEecCCCeEEEEEcCCcce----eeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcc
Q 041206 298 MLDAEAKPVLFSSGKDSAIRLYELPSFKL----RARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 298 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~ 362 (371)
+.+.+++++|++++.|+.|++||+.+++. +..+. +..+|.+++|+|++ +|++|+.|+.+ +|+..
T Consensus 211 ~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 211 VGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 66677777999999999999999999886 55554 57789999999999 88888766655 77665
No 91
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=6.7e-32 Score=238.76 Aligned_cols=242 Identities=15% Similarity=0.192 Sum_probs=195.9
Q ss_pred EeeeCccCCeEEEEEcCC----CCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCC
Q 041206 90 MKLNGHKKAVTNVGLPSG----SNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNA 165 (371)
Q Consensus 90 ~~l~~h~~~V~~~~~~~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 165 (371)
....+|.++|++++|+|+ ...+++++.++.|++||+.+++.+..+..... ..+.
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~----------------------~~~~ 69 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVD----------------------ADAD 69 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEEC----------------------SCTT
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccc----------------------cCCC
Confidence 344589999999999984 45666667777999999998877666542110 0134
Q ss_pred CCeeEEEEeCC------EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecC-Cce-eEecccceeeeeCCC
Q 041206 166 ASVNALVVNND------LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSN-DTR-WNSKEEAAVFEFCGH 236 (371)
Q Consensus 166 ~~v~~~~~~~~------~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~-~~~-l~~~~~~~~~~~~dg 236 (371)
..|.+++|+|+ +|++|+.||.|++||+.++ +.+..+..|. .|.+++|+| ++. ++++ +.||
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~l~s~-------~~dg 138 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM----QCIKHYVGHGNAINELKFHPRDPNLLLSV-------SKDH 138 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC----CEEEEEESCCSCEEEEEECSSCTTEEEEE-------ETTS
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc----eEeeeecCCCCcEEEEEECCCCCCEEEEE-------eCCC
Confidence 56999999877 8999999999999999988 7888899999 999999999 765 8899 9999
Q ss_pred eEEEEECCCceEEEEe---ecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcc---------------------
Q 041206 237 TTRTWNLDNLECVQTL---KGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNA--------------------- 290 (371)
Q Consensus 237 ~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~--------------------- 290 (371)
.|++||+++++.+..+ .+|...|.+++|+ +++|++++.|+.|++||++..+...
T Consensus 139 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (366)
T 3k26_A 139 ALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQK 218 (366)
T ss_dssp CEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEE
T ss_pred eEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCccccccee
Confidence 9999999999999888 6899999999998 6799999999999999977543110
Q ss_pred -----------eecceEEEEecCCCCEEEEecCCCeEEEEEcCCcce--------------eeeec-CCceEEEEEeCCC
Q 041206 291 -----------ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKL--------------RARIF-SRREVEVDQIGPA 344 (371)
Q Consensus 291 -----------~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------------~~~~~-~~~~v~~~~~s~~ 344 (371)
+...+..+.+. +.++++++.|+.|++||+.+... +..+. +...|++++|+|+
T Consensus 219 ~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 296 (366)
T 3k26_A 219 IHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMD 296 (366)
T ss_dssp ECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEEC
T ss_pred eccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCC
Confidence 22233333444 44999999999999999988644 33333 5678999999999
Q ss_pred --C-eEEeeCCCCcEEEEEccccce
Q 041206 345 --G-LFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 345 --~-~l~~~~~dg~i~iw~~~~~~~ 366 (371)
+ +|++|+.||.|++||+.+++.
T Consensus 297 ~~~~~l~~~~~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 297 FWQKMLALGNQVGKLYVWDLEVEDP 321 (366)
T ss_dssp TTSSEEEEECTTSCEEEEECCSSSG
T ss_pred CCCcEEEEEecCCcEEEEECCCCCC
Confidence 8 999999999999999987643
No 92
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.6e-31 Score=237.11 Aligned_cols=271 Identities=13% Similarity=0.079 Sum_probs=213.0
Q ss_pred cccCCCCceeeccCcc-------cccce--eEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCcc
Q 041206 13 HKHSEGGETMMSDDDD-------LMKGR--AEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTT 83 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d-------~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (371)
..|+|+|++|+++..| ...++ .+..+.+|...|.+++++|...++. .++.++.+++|+.. .
T Consensus 14 ~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~----~~~~dg~i~vwd~~------~ 83 (372)
T 1k8k_C 14 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV----TCGTDRNAYVWTLK------G 83 (372)
T ss_dssp EEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEE----EEETTSCEEEEEEE------T
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEE----EEcCCCeEEEEECC------C
Confidence 4689999999999766 33455 7888999999999999999665433 35677899999932 1
Q ss_pred CCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE---EEEeCCCeeEEEeecCCEEEEecCCcEEE
Q 041206 84 NSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCV---NVITNGAEIGCLISEGSWVFLGLPNAVKS 160 (371)
Q Consensus 84 ~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (371)
........+.+|...|.+++|+|++++|++++.||.|++||++.++.. ..+..
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~------------------------ 139 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK------------------------ 139 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECT------------------------
T ss_pred CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeec------------------------
Confidence 122334556789999999999999999999999999999999887632 22211
Q ss_pred EEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCC--------------CcceeeEEEecCc-ceEEEEecCCce-e
Q 041206 161 WRVNAASVNALVVNND--LLFAGSEGGVISVWKGTFVA--------------NPFKQVASIRAPL-WFCSLSSSNDTR-W 222 (371)
Q Consensus 161 ~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~--------------~~~~~~~~~~~~~-~v~~~~~~~~~~-l 222 (371)
.+...|.+++|+|+ ++++++.||.|++||++... ...+.+..+..|. .+.+++|+|++. +
T Consensus 140 --~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 217 (372)
T 1k8k_C 140 --PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV 217 (372)
T ss_dssp --TCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEE
T ss_pred --ccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEE
Confidence 13457999999988 99999999999999965210 0116777788888 999999999985 8
Q ss_pred EecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccC--C------------
Q 041206 223 NSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTH--T------------ 286 (371)
Q Consensus 223 ~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~--~------------ 286 (371)
+++ +.|+.|++||+++++++..+..|..+|.+++|+ +.+++++ .|+.|++|++.. .
T Consensus 218 ~~~-------~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~ 289 (372)
T 1k8k_C 218 AWV-------SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPK 289 (372)
T ss_dssp EEE-------ETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-
T ss_pred EEE-------eCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccc
Confidence 899 999999999999999999999999999999998 4455555 999999999877 2
Q ss_pred ------------------------------CC-cceecceEEE-EecCCC---CEEEEecCCCeEEEEEcCCccee
Q 041206 287 ------------------------------KN-NAELSSLFGM-LDAEAK---PVLFSSGKDSAIRLYELPSFKLR 327 (371)
Q Consensus 287 ------------------------------~~-~~~~~~~~~~-~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~ 327 (371)
.. ..+...+..+ +.++++ .+|++++.||.|++||+++++.+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 290 QSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp -------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred cchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence 11 1333455555 465665 79999999999999999876543
No 93
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=6.6e-32 Score=241.82 Aligned_cols=244 Identities=16% Similarity=0.082 Sum_probs=200.1
Q ss_pred eeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------eEEEEeCCCeeEEEeecCCEEEEecCCcEEE
Q 041206 87 ATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGR------CVNVITNGAEIGCLISEGSWVFLGLPNAVKS 160 (371)
Q Consensus 87 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (371)
.....+++|.+.|++++|+| ++|++|+.||.|++||+.+++ .+..+.
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~------------------------- 59 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF------------------------- 59 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-------------------------
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEe-------------------------
Confidence 45678899999999999998 799999999999999999887 444444
Q ss_pred EEeCCCCeeEEEEeC---------CEEEEEeCCCeEEEEeccCCCCcce-eeEEEecC-----c-ceEEEEec----CCc
Q 041206 161 WRVNAASVNALVVNN---------DLLFAGSEGGVISVWKGTFVANPFK-QVASIRAP-----L-WFCSLSSS----NDT 220 (371)
Q Consensus 161 ~~~~~~~v~~~~~~~---------~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~~-----~-~v~~~~~~----~~~ 220 (371)
.|...|.+++|++ .+|++++.||.|++||+.+...... ....+..| . .|.+++|+ |++
T Consensus 60 --~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 137 (397)
T 1sq9_A 60 --VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL 137 (397)
T ss_dssp --CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----
T ss_pred --cCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC
Confidence 2555789999875 4799999999999999998732111 17778877 5 99999999 887
Q ss_pred -e-eEecccceeeeeCCCeEEEEECCC------ceEEE-----Eee-------cCCCcEEEEEEc--CCeEEEEeCCCcE
Q 041206 221 -R-WNSKEEAAVFEFCGHTTRTWNLDN------LECVQ-----TLK-------GHSDTVTSLLFW--DEYLFSSSLDETI 278 (371)
Q Consensus 221 -~-l~~~~~~~~~~~~dg~i~iwd~~~------~~~~~-----~~~-------~~~~~v~~~~~~--~~~l~s~~~dg~i 278 (371)
. ++++ +.||.|++||+++ ++.+. .+. .|...|.+++|+ + ++++++.|+.|
T Consensus 138 ~~~l~~~-------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i 209 (397)
T 1sq9_A 138 SHRLVAT-------DVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTV 209 (397)
T ss_dssp CEEEEEE-------ETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEE
T ss_pred ceEEEEE-------eCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcE
Confidence 4 7888 9999999999998 66666 674 488999999999 5 99999999999
Q ss_pred EEEEccCCCCcc-------e---ecceEEEEecCCCCEEEEecCC---CeEEEEEcCCcceeeeec--------------
Q 041206 279 KIWLYTHTKNNA-------E---LSSLFGMLDAEAKPVLFSSGKD---SAIRLYELPSFKLRARIF-------------- 331 (371)
Q Consensus 279 ~iwd~~~~~~~~-------~---~~~~~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~-------------- 331 (371)
++||++..+... + ...+..+.+.+++.+|++++.| +.|++||+++++.+..+.
T Consensus 210 ~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (397)
T 1sq9_A 210 QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA 289 (397)
T ss_dssp EEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBS
T ss_pred EEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccc
Confidence 999987655321 2 3346666677777799999999 999999999998888776
Q ss_pred CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccccee
Q 041206 332 SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 332 ~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~ 367 (371)
+...|.+++|+|++ +|++++.||.|++||+.+++..
T Consensus 290 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 326 (397)
T 1sq9_A 290 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI 326 (397)
T ss_dssp BSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCcee
Confidence 57899999999999 9999999999999999876543
No 94
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.1e-32 Score=246.27 Aligned_cols=246 Identities=18% Similarity=0.199 Sum_probs=187.3
Q ss_pred CceeeEeeeCccCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEe
Q 041206 85 SLATLMKLNGHKKAVTNVGLPS-GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRV 163 (371)
Q Consensus 85 ~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 163 (371)
..+......+|...|++|+|+| ++++||+|+.||+|+|||+.+++....+... .
T Consensus 108 ~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~-------------------------g 162 (435)
T 4e54_B 108 SYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGI-------------------------G 162 (435)
T ss_dssp TTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCC-------------------------S
T ss_pred ceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEcc-------------------------C
Confidence 4455667788999999999999 6789999999999999999887654433321 1
Q ss_pred CCCCeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecC--c-ceEEEEecCCce-eEecccceeeeeCCC
Q 041206 164 NAASVNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAP--L-WFCSLSSSNDTR-WNSKEEAAVFEFCGH 236 (371)
Q Consensus 164 ~~~~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~--~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg 236 (371)
|.+.|++++|+|. +|++++.||.|++||+++. ........+ . .+.+++|+|++. +++| +.||
T Consensus 163 H~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-------~~dg 231 (435)
T 4e54_B 163 AGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN----ILRVFASSDTINIWFCSLDVSASSRMVVTG-------DNVG 231 (435)
T ss_dssp SSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC----EEEEEECCSSCSCCCCCEEEETTTTEEEEE-------CSSS
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC----ceeEEeccCCCCccEEEEEECCCCCEEEEE-------eCCC
Confidence 5667999999873 9999999999999999875 332222222 3 688999999986 8889 9999
Q ss_pred eEEEEECCCceEEEEeecCCCcEEEEEEc---CCeEEEEeCCCcEEEEEccCCCCc-------ceecceEEEEecCCCCE
Q 041206 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFW---DEYLFSSSLDETIKIWLYTHTKNN-------AELSSLFGMLDAEAKPV 306 (371)
Q Consensus 237 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~-------~~~~~~~~~~~~~~~~~ 306 (371)
.|++||++. +.+..+.+|...|.+++|+ +.+|++++.|+.|++||++..+.. .+...+..+.+.+++.+
T Consensus 232 ~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 310 (435)
T 4e54_B 232 NVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR 310 (435)
T ss_dssp BEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSE
T ss_pred cEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCe
Confidence 999999974 5677889999999999998 347889999999999998765432 23345666667777779
Q ss_pred EEEecCCCeEEEEEcCCcceeeeecC------------------CceEEEEEeCCCC--eEEeeCCCCcEEEEEccccce
Q 041206 307 LFSSGKDSAIRLYELPSFKLRARIFS------------------RREVEVDQIGPAG--LFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 307 l~~~~~d~~i~iwd~~~~~~~~~~~~------------------~~~v~~~~~s~~~--~l~~~~~dg~i~iw~~~~~~~ 366 (371)
|++++.|+.|++||+.+++....+.. ...+..+.+++++ .++++..++.|++||..+++.
T Consensus 311 l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~ 390 (435)
T 4e54_B 311 LLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM 390 (435)
T ss_dssp EEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE
T ss_pred eEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE
Confidence 99999999999999998876554431 1122334444444 333334556899999988765
Q ss_pred e
Q 041206 367 Q 367 (371)
Q Consensus 367 ~ 367 (371)
.
T Consensus 391 ~ 391 (435)
T 4e54_B 391 M 391 (435)
T ss_dssp E
T ss_pred E
Confidence 4
No 95
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=8e-32 Score=238.48 Aligned_cols=263 Identities=13% Similarity=0.038 Sum_probs=198.7
Q ss_pred cccCCCCceeeccCcccc-cc---------------------e--eEEEEEeeccceeeeeeeecceeec-----cceee
Q 041206 13 HKHSEGGETMMSDDDDLM-KG---------------------R--AEEREEMFGFGLAAMAIRVCNNWIS-----DSCVY 63 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d~~-~~---------------------~--~~~~~~~h~~~v~~~~~~~~~~~~~-----~~~~~ 63 (371)
-.|+|||++|++|+.+.. .| . ....+.+|.+.+.++++.....+.. .....
T Consensus 20 v~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s 99 (365)
T 4h5i_A 20 AKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENSTKITQ 99 (365)
T ss_dssp EEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCHHHHHH
T ss_pred EEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCccEEEE
Confidence 458999999999864311 00 0 1123456777777777654322211 11233
Q ss_pred CCccceEEEEEeccCCCCccCCceeeEe-----eeCccCCeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCceEEEEeC
Q 041206 64 GDKCRFLHSWVHSVDGDNTTNSLATLMK-----LNGHKKAVTNVGLPSGSNKLYSG--SRDGRVSVWDRDSGRCVNVITN 136 (371)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----l~~h~~~V~~~~~~~~~~~l~s~--~~dg~v~iwd~~~~~~~~~~~~ 136 (371)
+..++.++.|++..... ..+.+.. ...+...+.+++|+|||++|+++ +.|++|+|||+++++++..+.+
T Consensus 100 ~~~d~~~r~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~ 175 (365)
T 4h5i_A 100 GKGNKHLRKFKYDKVND----QLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIET 175 (365)
T ss_dssp TSCCCCEEEEEEETTTT----EEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEEC
T ss_pred ecCCCcEEEEEecCCCc----eEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCC
Confidence 56778899998543211 1112222 23455679999999999998654 5789999999999999999998
Q ss_pred CCeeEEEee--cCCEEEEecCCcEEEEEeCCC-------------CeeEEEEeCC--EEEEEeCCC----eEEEEeccCC
Q 041206 137 GAEIGCLIS--EGSWVFLGLPNAVKSWRVNAA-------------SVNALVVNND--LLFAGSEGG----VISVWKGTFV 195 (371)
Q Consensus 137 ~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~-------------~v~~~~~~~~--~l~~~~~dg----~v~iwd~~~~ 195 (371)
+..+.++.+ ++++++++.++.+.+|+..++ .|.+++|+|+ .+++++.++ .+++|++...
T Consensus 176 ~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~ 255 (365)
T 4h5i_A 176 RGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSG 255 (365)
T ss_dssp SSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETT
T ss_pred CCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccc
Confidence 888887765 688999988888888887654 5889999998 888888777 6888998776
Q ss_pred CCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEe-ecCCCcEEEEEEc--CCeEE
Q 041206 196 ANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTL-KGHSDTVTSLLFW--DEYLF 270 (371)
Q Consensus 196 ~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~--~~~l~ 270 (371)
.........+..|. .|++++|+|+++ |++| +.|++|+|||+++++++..+ ++|..+|++++|+ +++|+
T Consensus 256 ~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasg-------s~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~la 328 (365)
T 4h5i_A 256 NTSVLRSKQVTNRFKGITSMDVDMKGELAVLA-------SNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVA 328 (365)
T ss_dssp EEEEEEEEEEESSCSCEEEEEECTTSCEEEEE-------ETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEE
T ss_pred eecceeeeeecCCCCCeEeEEECCCCCceEEE-------cCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEE
Confidence 33223455677888 999999999997 8899 99999999999999999875 7899999999999 67999
Q ss_pred EEeCCCcEEEEEccCC
Q 041206 271 SSSLDETIKIWLYTHT 286 (371)
Q Consensus 271 s~~~dg~i~iwd~~~~ 286 (371)
++|.|++|+|||+...
T Consensus 329 S~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 329 SVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEETTSEEEEEECCTT
T ss_pred EEeCCCeEEEEEcCCC
Confidence 9999999999998543
No 96
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.1e-32 Score=235.12 Aligned_cols=241 Identities=20% Similarity=0.212 Sum_probs=186.8
Q ss_pred EEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCC-ceeeEeeeCccCCeEEEEEcC--CCCEEEE
Q 041206 37 REEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNS-LATLMKLNGHKKAVTNVGLPS--GSNKLYS 113 (371)
Q Consensus 37 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~l~~h~~~V~~~~~~~--~~~~l~s 113 (371)
.+.+|.+.|.+++++|...++. .++.|+.+++|+. ... ..++..+++|.+.|++++|+| ++++|+|
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~la----sgs~D~~v~lwd~-------~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s 76 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLA----TCSSDRSVKIFDV-------RNGGQILIADLRGHEGPVWQVAWAHPMYGNILAS 76 (316)
T ss_dssp ------CCEEEEEECGGGCEEE----EEETTTEEEEEEE-------ETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEE
T ss_pred ecccccCeEEEeeEcCCCCEEE----EEeCCCeEEEEEe-------cCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEE
Confidence 4679999999999999766433 4678999999993 222 246788999999999999986 4899999
Q ss_pred EeCCCcEEEEECCCCc--eEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC----EEEEEeCCCeE
Q 041206 114 GSRDGRVSVWDRDSGR--CVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND----LLFAGSEGGVI 187 (371)
Q Consensus 114 ~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~----~l~~~~~dg~v 187 (371)
|+.|++|++||+++++ ....+.. |...|.+++|+|+ +|++|+.|+.|
T Consensus 77 ~s~D~~v~iWd~~~~~~~~~~~~~~---------------------------h~~~V~~v~~~p~~~g~~lasgs~D~~i 129 (316)
T 3bg1_A 77 CSYDRKVIIWREENGTWEKSHEHAG---------------------------HDSSVNSVCWAPHDYGLILACGSSDGAI 129 (316)
T ss_dssp EETTSCEEEECCSSSCCCEEEEECC---------------------------CSSCCCEEEECCTTTCSCEEEECSSSCE
T ss_pred EECCCEEEEEECCCCcceEEEEccC---------------------------CCCceEEEEECCCCCCcEEEEEcCCCCE
Confidence 9999999999998774 3333332 5557999999985 89999999999
Q ss_pred EEEeccCCCCcceeeEEEecCc-ceEEEEecCCc------------------eeEecccceeeeeCCCeEEEEECCCc--
Q 041206 188 SVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT------------------RWNSKEEAAVFEFCGHTTRTWNLDNL-- 246 (371)
Q Consensus 188 ~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~------------------~l~~~~~~~~~~~~dg~i~iwd~~~~-- 246 (371)
++||++.... ......+..|. .+.+++|+|+. .|++| +.|+.|++||++..
T Consensus 130 ~lwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg-------s~D~~v~lWd~~~~~~ 201 (316)
T 3bg1_A 130 SLLTYTGEGQ-WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASG-------GCDNLIKLWKEEEDGQ 201 (316)
T ss_dssp EEEEECSSSC-EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECC-------BTTSBCCEEEECTTSC
T ss_pred EEEecCCCCC-cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEe-------cCCCeEEEEEeCCCCc
Confidence 9999987521 12234556788 99999999972 37788 99999999999754
Q ss_pred -eEEEEeecCCCcEEEEEEcC------CeEEEEeCCCcEEEEEccCCCC--------cceecceEEEEecCCCCEEEEec
Q 041206 247 -ECVQTLKGHSDTVTSLLFWD------EYLFSSSLDETIKIWLYTHTKN--------NAELSSLFGMLDAEAKPVLFSSG 311 (371)
Q Consensus 247 -~~~~~~~~~~~~v~~~~~~~------~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~ 311 (371)
+++..+.+|...|.+++|++ ++|++++.|++|++|++..... ..+...+..+.+.+++.+|++++
T Consensus 202 ~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~ 281 (316)
T 3bg1_A 202 WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSG 281 (316)
T ss_dssp EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEE
T ss_pred cceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEc
Confidence 56788899999999999983 5799999999999999876211 11123456666777777999999
Q ss_pred CCCeEEEEEcCC
Q 041206 312 KDSAIRLYELPS 323 (371)
Q Consensus 312 ~d~~i~iwd~~~ 323 (371)
.|+.|++|+...
T Consensus 282 ~D~~v~lw~~~~ 293 (316)
T 3bg1_A 282 GDNKVTLWKESV 293 (316)
T ss_dssp SSSCEEEEEECT
T ss_pred CCCeEEEEEECC
Confidence 999999999763
No 97
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=9.4e-31 Score=231.48 Aligned_cols=246 Identities=10% Similarity=0.117 Sum_probs=196.7
Q ss_pred cCCceeeEeeeCccCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCC-CceE-EEEeCCCeeEEEeecCCEEEEecCCc
Q 041206 83 TNSLATLMKLNGHKKAVTNVGLPSG---SNKLYSGSRDGRVSVWDRDS-GRCV-NVITNGAEIGCLISEGSWVFLGLPNA 157 (371)
Q Consensus 83 ~~~~~~~~~l~~h~~~V~~~~~~~~---~~~l~s~~~dg~v~iwd~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (371)
....+.+..+++|.+.|++++|+|+ +++|++|+.||.|++||+.+ +..+ ..+.
T Consensus 26 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---------------------- 83 (368)
T 3mmy_A 26 HNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ---------------------- 83 (368)
T ss_dssp SCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE----------------------
T ss_pred CCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec----------------------
Confidence 3456778899999999999999998 69999999999999999987 4443 3332
Q ss_pred EEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEe--cCCce-eEecccceee
Q 041206 158 VKSWRVNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSS--SNDTR-WNSKEEAAVF 231 (371)
Q Consensus 158 i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~--~~~~~-l~~~~~~~~~ 231 (371)
.|...|.+++|+|+ +|++++.||.|++||+.+. +... +..|. .|.+++| ++++. ++++
T Consensus 84 -----~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~------ 147 (368)
T 3mmy_A 84 -----MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN----QAIQ-IAQHDAPVKTIHWIKAPNYSCVMTG------ 147 (368)
T ss_dssp -----ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT----EEEE-EEECSSCEEEEEEEECSSCEEEEEE------
T ss_pred -----cccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC----Ccee-eccccCceEEEEEEeCCCCCEEEEc------
Confidence 35667999999988 9999999999999999987 5444 56677 9999999 88886 8899
Q ss_pred eeCCCeEEEEECCCceEEEEeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCCc---------ceecceEEEEecC
Q 041206 232 EFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKNN---------AELSSLFGMLDAE 302 (371)
Q Consensus 232 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~~~ 302 (371)
+.|+.|++||+++++++..+..+. .+.++.+.+..+++++.++.+++|+++..... .....+.......
T Consensus 148 -~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (368)
T 3mmy_A 148 -SWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQ 225 (368)
T ss_dssp -ETTSEEEEECSSCSSCSEEEECSS-CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTT
T ss_pred -cCCCcEEEEECCCCcEEEEEecCC-CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCC
Confidence 999999999999999998888664 77888888889999999999999998765421 1111222122221
Q ss_pred C-CCEEEEecCCCeEEEEEcCCc---ceeeeecCCc-------------eEEEEEeCCCC-eEEeeCCCCcEEEEEcccc
Q 041206 303 A-KPVLFSSGKDSAIRLYELPSF---KLRARIFSRR-------------EVEVDQIGPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 303 ~-~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~-------------~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
. ...+++++.|+.|++||++.. .....+.... +|++++|+|++ +|++|+.||.|++||+.++
T Consensus 226 ~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 305 (368)
T 3mmy_A 226 NKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR 305 (368)
T ss_dssp SCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred CCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence 1 123999999999999999987 3444444322 69999999999 9999999999999999987
Q ss_pred ceec
Q 041206 365 EQQK 368 (371)
Q Consensus 365 ~~~~ 368 (371)
+...
T Consensus 306 ~~~~ 309 (368)
T 3mmy_A 306 TKLK 309 (368)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 6543
No 98
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.6e-31 Score=235.56 Aligned_cols=241 Identities=12% Similarity=0.171 Sum_probs=193.4
Q ss_pred eeEeeeCccCCeEEEEEcCCCCEE-EEEeC---CCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEe
Q 041206 88 TLMKLNGHKKAVTNVGLPSGSNKL-YSGSR---DGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRV 163 (371)
Q Consensus 88 ~~~~l~~h~~~V~~~~~~~~~~~l-~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 163 (371)
....+++|...|++++|+|+++.+ ++++. ||.|++||+.+++....... .
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~--------------------------~ 63 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI--------------------------E 63 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE--------------------------E
T ss_pred hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee--------------------------c
Confidence 345668899999999999988655 56665 99999999998876543321 1
Q ss_pred CCCCeeEEEEeC-----CEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEE------ecCCce-eEeccccee
Q 041206 164 NAASVNALVVNN-----DLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLS------SSNDTR-WNSKEEAAV 230 (371)
Q Consensus 164 ~~~~v~~~~~~~-----~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~------~~~~~~-l~~~~~~~~ 230 (371)
+...|.+++|+| .++++++.||.|++||+.+.. .....+..|. .|.++. |+|++. ++++
T Consensus 64 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~----- 135 (357)
T 3i2n_A 64 KAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE---MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTG----- 135 (357)
T ss_dssp ESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS---SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEE-----
T ss_pred ccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC---ccEEEEEecccceEEEeeccccccCCCccEEEEE-----
Confidence 445689999987 389999999999999999872 2778888999 999995 567775 8889
Q ss_pred eeeCCCeEEEEECCCce-EEEEeecCCC----cEEEEEE----c--CCeEEEEeCCCcEEEEEccCCCCc---ceecceE
Q 041206 231 FEFCGHTTRTWNLDNLE-CVQTLKGHSD----TVTSLLF----W--DEYLFSSSLDETIKIWLYTHTKNN---AELSSLF 296 (371)
Q Consensus 231 ~~~~dg~i~iwd~~~~~-~~~~~~~~~~----~v~~~~~----~--~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~ 296 (371)
+.|+.|++||+++++ ++..+..|.+ .+.+++| + ++++++++.|+.|++||++..+.. .....+.
T Consensus 136 --~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~ 213 (357)
T 3i2n_A 136 --SRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVC 213 (357)
T ss_dssp --ETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEE
T ss_pred --eCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceE
Confidence 999999999999887 6777776655 8999984 4 789999999999999998876531 1123455
Q ss_pred EEEecC---CCCEEEEecCCCeEEEEEcCCcceeeee------cCCceEEEEEeCCCC--eEEeeCCCCcEEEEEcccc
Q 041206 297 GMLDAE---AKPVLFSSGKDSAIRLYELPSFKLRARI------FSRREVEVDQIGPAG--LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 297 ~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~~~~v~~~~~s~~~--~l~~~~~dg~i~iw~~~~~ 364 (371)
.+.+.+ ++.++++++.||.|++||+++++....+ .+...|++++|+|++ +|++++.||.|++||+..+
T Consensus 214 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 214 SLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp EEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred EEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence 556665 6669999999999999999987765544 368899999999998 7999999999999999854
No 99
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-32 Score=260.26 Aligned_cols=239 Identities=13% Similarity=0.139 Sum_probs=192.3
Q ss_pred eEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCC
Q 041206 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSG--RCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAA 166 (371)
Q Consensus 89 ~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 166 (371)
+..+.+|.+.|++++|+|++++|++|+.||+|++||+.++ +....+.. |.+
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~---------------------------h~~ 54 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG---------------------------HEG 54 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECC---------------------------CSS
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccC---------------------------CcC
Confidence 4578999999999999999999999999999999998743 44444432 566
Q ss_pred CeeEEEEeC----CEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCC--ce-eEecccceeeeeCCCeE
Q 041206 167 SVNALVVNN----DLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSND--TR-WNSKEEAAVFEFCGHTT 238 (371)
Q Consensus 167 ~v~~~~~~~----~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~--~~-l~~~~~~~~~~~~dg~i 238 (371)
.|.+++|++ +++++|+.||.|++||+.++. ......+..|. .|.+++|+|+ +. +++| +.||.|
T Consensus 55 ~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~--~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg-------s~dg~I 125 (753)
T 3jro_A 55 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR--WSQIAVHAVHSASVNSVQWAPHEYGPLLLVA-------SSDGKV 125 (753)
T ss_dssp CEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCGGGCSEEEEE-------ETTSEE
T ss_pred ceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc--ccccccccCCCCCeEEEEECCCCCCCEEEEE-------eCCCcE
Confidence 799999974 399999999999999999871 12677788888 9999999998 64 8999 999999
Q ss_pred EEEECCCce--EEEEeecCCCcEEEEEEcC---------------CeEEEEeCCCcEEEEEccCCCC--------cceec
Q 041206 239 RTWNLDNLE--CVQTLKGHSDTVTSLLFWD---------------EYLFSSSLDETIKIWLYTHTKN--------NAELS 293 (371)
Q Consensus 239 ~iwd~~~~~--~~~~~~~~~~~v~~~~~~~---------------~~l~s~~~dg~i~iwd~~~~~~--------~~~~~ 293 (371)
++||++++. ....+.+|...|.+++|++ +++++++.||.|++||++.... ..+..
T Consensus 126 ~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~ 205 (753)
T 3jro_A 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD 205 (753)
T ss_dssp EEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred EEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCC
Confidence 999998873 3456778999999999974 5899999999999999887642 12223
Q ss_pred ceEEEEecCC---CCEEEEecCCCeEEEEEcCCcce-----ee-eecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEccc
Q 041206 294 SLFGMLDAEA---KPVLFSSGKDSAIRLYELPSFKL-----RA-RIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 294 ~~~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~-----~~-~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~ 363 (371)
.+..+.+.++ +.++++++.||.|++||+.+++. .. ...+...|++++|+|++ +|++|+.||.|++|++..
T Consensus 206 ~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 206 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp CEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred cEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 4556666666 77999999999999999998641 11 12257889999999999 999999999999999985
No 100
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=5.7e-30 Score=225.83 Aligned_cols=266 Identities=12% Similarity=0.088 Sum_probs=191.5
Q ss_pred CceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-CeeEEEeecCCEEE-E-ecCCcEEEE
Q 041206 85 SLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNG-AEIGCLISEGSWVF-L-GLPNAVKSW 161 (371)
Q Consensus 85 ~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~-~~~~~i~~~ 161 (371)
..+++..+++|.+.|++++|+||+++|++|+.++ +++||+.+++.......+ .....+.+.++.++ + +.++.|++|
T Consensus 8 ~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 8 TRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp -----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred ccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence 3456677899999999999999999999998776 889999988776655443 23444455666664 3 457899999
Q ss_pred EeCCC----------CeeEEEEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCcee-Ee-cccce
Q 041206 162 RVNAA----------SVNALVVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTRW-NS-KEEAA 229 (371)
Q Consensus 162 ~~~~~----------~v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l-~~-~~~~~ 229 (371)
|..++ .|.+++++++.++++. ++.|++||+.+... .+..+.. +...+++++ ..+ ++ |
T Consensus 87 d~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~---~~~~~~~--~~~~~~~s~-~~la~~sg---- 155 (355)
T 3vu4_A 87 DDVKKQDVSRIKVDAPVKDLFLSREFIVVSY-GDVISVFKFGNPWK---RITDDIR--FGGVCEFSN-GLLVYSNE---- 155 (355)
T ss_dssp ETTTTEEEEEEECSSCEEEEEECSSEEEEEE-TTEEEEEESSTTCC---BSSCCEE--EEEEEEEET-TEEEEEES----
T ss_pred ECCCCcEEEEEECCCceEEEEEcCCEEEEEE-cCEEEEEECCCCce---eeEEecc--CCceEEEEc-cEEEEeCC----
Confidence 98766 7889999998666654 78999999987622 2222222 223344555 443 33 7
Q ss_pred eeeeCCCeEEEEECCCce---------------E-EEEeecCCCcEEEEEEc--CCeEEEEeCCCc-EEEEEccCCCCcc
Q 041206 230 VFEFCGHTTRTWNLDNLE---------------C-VQTLKGHSDTVTSLLFW--DEYLFSSSLDET-IKIWLYTHTKNNA 290 (371)
Q Consensus 230 ~~~~~dg~i~iwd~~~~~---------------~-~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~-i~iwd~~~~~~~~ 290 (371)
+.+|.|++||+++++ + +..+.+|..+|.+++|+ +++|++++.|++ |++||++..+...
T Consensus 156 ---~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~ 232 (355)
T 3vu4_A 156 ---FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR 232 (355)
T ss_dssp ---SCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE
T ss_pred ---CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 899999999999865 2 67889999999999998 689999999998 9999998765421
Q ss_pred ------eecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceee--e--------------------ec--CCceEEEEE
Q 041206 291 ------ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRA--R--------------------IF--SRREVEVDQ 340 (371)
Q Consensus 291 ------~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~--------------------~~--~~~~v~~~~ 340 (371)
+...+..+.+.+++.+|++++.|++|++||++...... . +. ...+...++
T Consensus 233 ~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 312 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIA 312 (355)
T ss_dssp EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEE
T ss_pred EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEE
Confidence 33456777777777799999999999999997653111 0 00 012336789
Q ss_pred eCCCC-eEEeeCCCCcEEEEEccccc
Q 041206 341 IGPAG-LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 341 ~s~~~-~l~~~~~dg~i~iw~~~~~~ 365 (371)
|+|++ .|++++.||.+++|++..++
T Consensus 313 ~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 313 WISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp ESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred EeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 99999 99999999999999987644
No 101
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=3.8e-30 Score=226.93 Aligned_cols=274 Identities=11% Similarity=0.081 Sum_probs=204.5
Q ss_pred ccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCC
Q 041206 30 MKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSN 109 (371)
Q Consensus 30 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~ 109 (371)
...+++..+..|...|.+++|+|.+.+++. +..+ -+++|+. ...+...... ...+..+++.++++
T Consensus 7 ~~~~~~~~~~~h~~~V~~v~fs~dg~~la~----g~~~-~~~iw~~--------~~~~~~~~~~--~~~~~~~~~~~~~~ 71 (355)
T 3vu4_A 7 ITRNPIVPENHVSNPVTDYEFNQDQSCLIL----STLK-SFEIYNV--------HPVAHIMSQE--MRHLSKVRMLHRTN 71 (355)
T ss_dssp ------------CCCCCEEEECTTSSEEEE----ECSS-EEEEEEE--------TTEEEEEEEE--CSCCCEEEECTTSS
T ss_pred cccCCccccccCCCceEEEEECCCCCEEEE----EcCC-EEEEEec--------CCcceeeeee--cCCeEEEEEcCCCC
Confidence 445566677899999999999998776542 2333 4679983 3334444333 23588888998888
Q ss_pred EE-EEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCC---------CeeEEEEeCCEEE
Q 041206 110 KL-YSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAA---------SVNALVVNNDLLF 179 (371)
Q Consensus 110 ~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------~v~~~~~~~~~l~ 179 (371)
.+ ++++.|++|++||..+++++..+....++.++.+....++++.++.+++||+.+. +...+++++..++
T Consensus 72 ~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la 151 (355)
T 3vu4_A 72 YVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLV 151 (355)
T ss_dssp EEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEE
T ss_pred EEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEE
Confidence 77 5677889999999999999999999899999999988888888999999999877 2334556667555
Q ss_pred E--EeCCCeEEEEeccCCCC-----------ccee-eEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCe-EEEEE
Q 041206 180 A--GSEGGVISVWKGTFVAN-----------PFKQ-VASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHT-TRTWN 242 (371)
Q Consensus 180 ~--~~~dg~v~iwd~~~~~~-----------~~~~-~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~-i~iwd 242 (371)
+ |+.+|.|++||+.++.. ...+ +..+.+|. .|.+++|+|+++ ++++ +.|++ |++||
T Consensus 152 ~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~-------s~d~~~v~iwd 224 (355)
T 3vu4_A 152 YSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC-------SQDGTIIRVFK 224 (355)
T ss_dssp EEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEE-------ETTCSEEEEEE
T ss_pred EeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEE-------eCCCCEEEEEE
Confidence 5 68899999999987520 0012 67889999 999999999996 8999 99998 99999
Q ss_pred CCCceEEEEee-c-CCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcc--eec-----------------------
Q 041206 243 LDNLECVQTLK-G-HSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNA--ELS----------------------- 293 (371)
Q Consensus 243 ~~~~~~~~~~~-~-~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~--~~~----------------------- 293 (371)
+++++++..+. + |...|.+++|+ +++|++++.|++|++||++...... .+.
T Consensus 225 ~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (355)
T 3vu4_A 225 TEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDK 304 (355)
T ss_dssp TTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCT
T ss_pred CCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCC
Confidence 99999999998 5 99999999999 6799999999999999987643211 000
Q ss_pred --ceEEEEecCCCCEEEEecCCCeEEEEEcCCcc
Q 041206 294 --SLFGMLDAEAKPVLFSSGKDSAIRLYELPSFK 325 (371)
Q Consensus 294 --~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 325 (371)
....+.+.+++.++++++.||.+++|++..+.
T Consensus 305 ~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 305 HVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp TCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 01334555666699999999999999987644
No 102
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-30 Score=231.44 Aligned_cols=239 Identities=15% Similarity=0.215 Sum_probs=195.1
Q ss_pred ceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCC--CC
Q 041206 32 GRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSG--SN 109 (371)
Q Consensus 32 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~--~~ 109 (371)
|+++..+.+|...|.+++++|...++. .++.++.|++|+.. ....+.+..+.+|...|++++|+|+ ++
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~----~~~~dg~i~iw~~~------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 70 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLA----TCSSDKTIKIFEVE------GETHKLIDTLTGHEGPVWRVDWAHPKFGT 70 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEE----EEETTSCEEEEEEE------TTEEEEEEEECCCSSCEEEEEECCGGGCS
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEE----EEECCCcEEEEecC------CCcceeeeEecCCCCcEEEEEeCCCCCCC
Confidence 456778899999999999999776543 35678899999942 2356788899999999999999987 99
Q ss_pred EEEEEeCCCcEEEEECCCCc--eEEEEe-CCCeeEEEeec----CCEEEE-ecCCcEEEEEeCCC-------------Ce
Q 041206 110 KLYSGSRDGRVSVWDRDSGR--CVNVIT-NGAEIGCLISE----GSWVFL-GLPNAVKSWRVNAA-------------SV 168 (371)
Q Consensus 110 ~l~s~~~dg~v~iwd~~~~~--~~~~~~-~~~~~~~~~~~----~~~~~~-~~~~~i~~~~~~~~-------------~v 168 (371)
+|++++.||.|++||+.+++ .+..+. +...+.++.+. +.++++ +.++.|++||+... .|
T Consensus 71 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v 150 (379)
T 3jrp_A 71 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV 150 (379)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCE
T ss_pred EEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCce
Confidence 99999999999999999987 555555 35667777753 556655 57899999998665 68
Q ss_pred eEEEEeC-------------C--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCC---ce-eEecccc
Q 041206 169 NALVVNN-------------D--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSND---TR-WNSKEEA 228 (371)
Q Consensus 169 ~~~~~~~-------------~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~---~~-l~~~~~~ 228 (371)
.+++|+| + ++++++.||.|++||++...........+..|. .|.+++|+|+ +. ++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~--- 227 (379)
T 3jrp_A 151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV--- 227 (379)
T ss_dssp EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE---
T ss_pred EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEE---
Confidence 9999998 4 999999999999999998765556677888898 9999999999 65 8899
Q ss_pred eeeeeCCCeEEEEECCCce-----EEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCC
Q 041206 229 AVFEFCGHTTRTWNLDNLE-----CVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTK 287 (371)
Q Consensus 229 ~~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~ 287 (371)
+.||.|++||+++++ .+.....|...|.+++|+ +++|++++.||.|++|++....
T Consensus 228 ----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 228 ----SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp ----ETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred ----eCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 999999999999863 223334588899999998 6799999999999999988654
No 103
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-30 Score=235.06 Aligned_cols=240 Identities=15% Similarity=0.101 Sum_probs=190.4
Q ss_pred eeCccCCeEEEEEcCCCCEE-EEEeCCCcEEEEECC--CCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCe
Q 041206 92 LNGHKKAVTNVGLPSGSNKL-YSGSRDGRVSVWDRD--SGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASV 168 (371)
Q Consensus 92 l~~h~~~V~~~~~~~~~~~l-~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v 168 (371)
..+|.+.|++++|+|++++| ++++.||.|++||+. +++.+..+... .+...|
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~-------------------------~~~~~v 152 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF-------------------------CFSKRP 152 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE-------------------------ECSSCE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc-------------------------cCCCCc
Confidence 35677899999999999996 899999999999999 78777766421 133468
Q ss_pred eEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCC---ce-eEecccceeeeeCCCeEEEE
Q 041206 169 NALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSND---TR-WNSKEEAAVFEFCGHTTRTW 241 (371)
Q Consensus 169 ~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~---~~-l~~~~~~~~~~~~dg~i~iw 241 (371)
.+++|+|+ +|++++.+|.|++|++.+..........+.+|. .|.+++|+|+ ++ ++++ +.|+.|++|
T Consensus 153 ~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~-------~~d~~i~vw 225 (450)
T 2vdu_B 153 NAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITS-------DRDEHIKIS 225 (450)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEE-------ETTSCEEEE
T ss_pred eEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEE-------cCCCcEEEE
Confidence 99999998 999999999999999988732211334677888 9999999999 85 8899 999999999
Q ss_pred ECCCceEEEE-eecCCCcEEEEEEc-CCeEEEEeCCCcEEEEEccCCCCccee---------------------------
Q 041206 242 NLDNLECVQT-LKGHSDTVTSLLFW-DEYLFSSSLDETIKIWLYTHTKNNAEL--------------------------- 292 (371)
Q Consensus 242 d~~~~~~~~~-~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~--------------------------- 292 (371)
|+++++.+.. +.+|...|.+++|+ +++|++++.|+.|++||+...+....+
T Consensus 226 d~~~~~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (450)
T 2vdu_B 226 HYPQCFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDI 305 (450)
T ss_dssp EESCTTCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------C
T ss_pred ECCCCceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccccccc
Confidence 9999988877 56899999999997 889999999999999998776532111
Q ss_pred --cceEEEEecCCCCEEEEec-CCCeEEEEEc--CCc---ceeeeecCCceEEEEEeCCCC-eEEeeCC------CCcEE
Q 041206 293 --SSLFGMLDAEAKPVLFSSG-KDSAIRLYEL--PSF---KLRARIFSRREVEVDQIGPAG-LFFPGDA------SGSVG 357 (371)
Q Consensus 293 --~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~--~~~---~~~~~~~~~~~v~~~~~s~~~-~l~~~~~------dg~i~ 357 (371)
..+..+.+.++++++++++ .++.|++|++ ... +.+..+.....|.+++|+|++ ++++++. +..|.
T Consensus 306 ~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~ 385 (450)
T 2vdu_B 306 IEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAK 385 (450)
T ss_dssp BCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEE
T ss_pred ceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceE
Confidence 1344555666666888887 8999999999 554 556666656899999999977 5554443 55689
Q ss_pred EEEccc
Q 041206 358 VWKWLL 363 (371)
Q Consensus 358 iw~~~~ 363 (371)
+|.+..
T Consensus 386 v~~~~~ 391 (450)
T 2vdu_B 386 FIEYNL 391 (450)
T ss_dssp EEEEET
T ss_pred EEEEEc
Confidence 998764
No 104
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.9e-30 Score=229.24 Aligned_cols=242 Identities=14% Similarity=0.199 Sum_probs=198.6
Q ss_pred CceeeEeeeCccCCe--EEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEE
Q 041206 85 SLATLMKLNGHKKAV--TNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWR 162 (371)
Q Consensus 85 ~~~~~~~l~~h~~~V--~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 162 (371)
....+....+|...+ .+++|+ +..+++++.|+.|++||+.+++....+...
T Consensus 80 ~p~~~~~~~~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~------------------------- 132 (401)
T 4aez_A 80 TPERVLDAPGIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALAETD------------------------- 132 (401)
T ss_dssp SCSEEEECTTCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEECC-------------------------
T ss_pred CcceeeeCCCCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEeeecC-------------------------
Confidence 344555666887764 445555 456888999999999999999887766541
Q ss_pred eCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEE
Q 041206 163 VNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTR 239 (371)
Q Consensus 163 ~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~ 239 (371)
+...|.+++|+|+ +|++|+.||.|++||+.++ +.+..+..|. .|.+++|++ ..++++ +.||.|+
T Consensus 133 -~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~-~~l~~~-------~~dg~i~ 199 (401)
T 4aez_A 133 -ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ----TKLRTMAGHQARVGCLSWNR-HVLSSG-------SRSGAIH 199 (401)
T ss_dssp -TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEEET-TEEEEE-------ETTSEEE
T ss_pred -CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC----eEEEEecCCCCceEEEEECC-CEEEEE-------cCCCCEE
Confidence 3456999999988 9999999999999999988 7888899999 999999954 468899 9999999
Q ss_pred EEECC-CceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCc----ceecceEEEE-ecCCCCEEEEec
Q 041206 240 TWNLD-NLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNN----AELSSLFGML-DAEAKPVLFSSG 311 (371)
Q Consensus 240 iwd~~-~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~-~~~~~~~l~~~~ 311 (371)
+||++ ....+..+.+|...|.+++|+ +++|++++.|+.|++||++..... .+...+..+. .+.+..++++++
T Consensus 200 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~ 279 (401)
T 4aez_A 200 HHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG 279 (401)
T ss_dssp EEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC
T ss_pred EEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec
Confidence 99999 567788899999999999998 679999999999999998875532 1222344444 444666788765
Q ss_pred --CCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEe--eCCCCcEEEEEccccce
Q 041206 312 --KDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFP--GDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 312 --~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~--~~~dg~i~iw~~~~~~~ 366 (371)
.|+.|++||+.+++.+..+.+...|.+++|+|++ .+++ |+.||.|++|++.+++.
T Consensus 280 gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~ 339 (401)
T 4aez_A 280 GTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL 339 (401)
T ss_dssp CTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE
T ss_pred CCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc
Confidence 7999999999999999988888999999999999 7777 66899999999987543
No 105
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.2e-30 Score=236.19 Aligned_cols=254 Identities=15% Similarity=0.149 Sum_probs=194.5
Q ss_pred eEeeeCccCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCC
Q 041206 89 LMKLNGHKKAVTNVGLPSG-SNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAAS 167 (371)
Q Consensus 89 ~~~l~~h~~~V~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 167 (371)
...+.+|.+.|++++|+|+ +++|++++.||.|++||+.+........ +....+..+..|...
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~-----------------~~~~~~~~~~~h~~~ 183 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPS-----------------GECQPDLRLRGHQKE 183 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTT-----------------CCCCCSEEEECCSSC
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCcc-----------------ccCCCcEEecCCCCC
Confidence 3556779999999999997 7899999999999999997621000000 000112223346668
Q ss_pred eeEEEEeCC---EEEEEeCCCeEEEEeccCCCCc---ceeeEEEecCc-ceEEEEecCC-ce-eEecccceeeeeCCCeE
Q 041206 168 VNALVVNND---LLFAGSEGGVISVWKGTFVANP---FKQVASIRAPL-WFCSLSSSND-TR-WNSKEEAAVFEFCGHTT 238 (371)
Q Consensus 168 v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~-~v~~~~~~~~-~~-l~~~~~~~~~~~~dg~i 238 (371)
|.+++|+|+ +|++|+.||.|++||+...... ......+..|. .|.+++|+|+ +. ++++ +.|+.|
T Consensus 184 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~-------~~dg~i 256 (430)
T 2xyi_A 184 GYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV-------ADDQKL 256 (430)
T ss_dssp CCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE-------ETTSEE
T ss_pred eEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE-------eCCCeE
Confidence 999999987 8999999999999999874321 12356677888 9999999994 43 7888 999999
Q ss_pred EEEECCCc---eEEEEeecCCCcEEEEEEc--C-CeEEEEeCCCcEEEEEccCCCC-c----ceecceEEEEecC-CCCE
Q 041206 239 RTWNLDNL---ECVQTLKGHSDTVTSLLFW--D-EYLFSSSLDETIKIWLYTHTKN-N----AELSSLFGMLDAE-AKPV 306 (371)
Q Consensus 239 ~iwd~~~~---~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~i~iwd~~~~~~-~----~~~~~~~~~~~~~-~~~~ 306 (371)
++||++++ +.+..+..|...|++++|+ + .++++++.||.|++||++.... . .+...+..+.+.+ +..+
T Consensus 257 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~ 336 (430)
T 2xyi_A 257 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI 336 (430)
T ss_dssp EEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTE
T ss_pred EEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCE
Confidence 99999987 5777888999999999999 3 3789999999999999987432 1 1223455555554 4468
Q ss_pred EEEecCCCeEEEEEcCCc--------------ceeeeec-CCceEEEEEeCCCC--eEEeeCCCCcEEEEEccccce
Q 041206 307 LFSSGKDSAIRLYELPSF--------------KLRARIF-SRREVEVDQIGPAG--LFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 307 l~~~~~d~~i~iwd~~~~--------------~~~~~~~-~~~~v~~~~~s~~~--~l~~~~~dg~i~iw~~~~~~~ 366 (371)
|++++.|+.|++||+... +++..+. |...|++++|+|++ +|++++.||.|+||++.....
T Consensus 337 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~ 413 (430)
T 2xyi_A 337 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY 413 (430)
T ss_dssp EEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHH
T ss_pred EEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccccc
Confidence 999999999999999872 3444443 56789999999998 899999999999999976543
No 106
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=2.2e-28 Score=218.53 Aligned_cols=256 Identities=11% Similarity=0.066 Sum_probs=206.8
Q ss_pred eCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEEEeCCCeeE
Q 041206 63 YGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKL-YSGSRDGRVSVWDRDSGRCVNVITNGAEIG 141 (371)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 141 (371)
.+..++.|++|+ ...++.+..+.+|.. +.+++|+|++++| ++++.|+.|++||+.+++.+..+..+.
T Consensus 7 s~~~d~~v~v~d--------~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~--- 74 (391)
T 1l0q_A 7 ANSESDNISVID--------VTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS--- 74 (391)
T ss_dssp EETTTTEEEEEE--------TTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS---
T ss_pred EcCCCCEEEEEE--------CCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC---
Confidence 367788999999 456688888887765 8999999999976 677799999999999999888877543
Q ss_pred EEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEE-EEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecC
Q 041206 142 CLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLF-AGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSN 218 (371)
Q Consensus 142 ~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 218 (371)
.+.+++|+|+ +++ ++..++.|++||+.++ +.+..+..+..+.+++|+|
T Consensus 75 -------------------------~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~----~~~~~~~~~~~~~~~~~s~ 125 (391)
T 1l0q_A 75 -------------------------SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN----TVAGTVKTGKSPLGLALSP 125 (391)
T ss_dssp -------------------------SEEEEEECTTSSEEEEEETTTTEEEEEETTTT----EEEEEEECSSSEEEEEECT
T ss_pred -------------------------CccceEECCCCCEEEEEECCCCEEEEEECCCC----eEEEEEeCCCCcceEEECC
Confidence 4889999987 554 5556799999999988 7777777766889999999
Q ss_pred Cce-e-EecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeE-EEEeCCCcEEEEEccCCCCccee-
Q 041206 219 DTR-W-NSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYL-FSSSLDETIKIWLYTHTKNNAEL- 292 (371)
Q Consensus 219 ~~~-l-~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i~iwd~~~~~~~~~~- 292 (371)
+++ + +++ +.++.|++||+++++.+..+..+ ..+.+++|+ ++++ ++++.++.|++||++..+....+
T Consensus 126 dg~~l~~~~-------~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 197 (391)
T 1l0q_A 126 DGKKLYVTN-------NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK 197 (391)
T ss_dssp TSSEEEEEE-------TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEe-------CCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 986 5 677 88999999999999999888865 456899998 4566 67788999999998776532211
Q ss_pred --cceEEEEecCCCCEEEEec---CCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eE-EeeCCCCcEEEEEccccc
Q 041206 293 --SSLFGMLDAEAKPVLFSSG---KDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LF-FPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 293 --~~~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l-~~~~~dg~i~iw~~~~~~ 365 (371)
..+..+.+.+++.++++++ .++.|++||+.+++.+..+.....+.+++|+|++ .| ++++.|+.|++||+.+++
T Consensus 198 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 198 VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence 2334445555666777776 6899999999999888888766778999999999 55 788899999999998776
Q ss_pred ee
Q 041206 366 QQ 367 (371)
Q Consensus 366 ~~ 367 (371)
..
T Consensus 278 ~~ 279 (391)
T 1l0q_A 278 IT 279 (391)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 107
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=4.5e-30 Score=229.64 Aligned_cols=237 Identities=10% Similarity=-0.022 Sum_probs=168.7
Q ss_pred eeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEE
Q 041206 92 LNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNAL 171 (371)
Q Consensus 92 l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~ 171 (371)
...|...+....+++++.+|++++.|++|+|||..+++........ .+.-|++.|+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~----------------------~~~gH~~~v~~v 142 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLG----------------------GKSGHHNFVNDI 142 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEEC----------------------TTTSCSSCEEEE
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeec----------------------ccCCCCCceEEE
Confidence 3445555556666678889999999999999999988765432210 001266789999
Q ss_pred EEeC--------C--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce--eEecccceeeeeCCCeE
Q 041206 172 VVNN--------D--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR--WNSKEEAAVFEFCGHTT 238 (371)
Q Consensus 172 ~~~~--------~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i 238 (371)
+|+| + +|++++.|++|++||+.+. .+...+..|. .+.+++|+|++. ++++ +.|++|
T Consensus 143 ~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~----~~~~~~~~~~~~v~~v~~~p~~~~~l~~~-------~~d~~v 211 (393)
T 4gq1_A 143 DIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE----GPILAGYPLSSPGISVQFRPSNPNQLIVG-------ERNGNI 211 (393)
T ss_dssp EEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT----EEEEEEEECSSCEEEEEEETTEEEEEEEE-------ETTSEE
T ss_pred EEccccccccCCCCCEEEEEECCCeEEEEECCCC----ceeeeecCCCCCcEEEEECCCCCceEEec-------CCCCEE
Confidence 9986 3 8999999999999999887 6777777777 999999999873 8899 999999
Q ss_pred EEEECCCceEEEE-------------------------eecCCCcEEEEEEc---CCeEEEEeCCCcEEEEEccCCCCcc
Q 041206 239 RTWNLDNLECVQT-------------------------LKGHSDTVTSLLFW---DEYLFSSSLDETIKIWLYTHTKNNA 290 (371)
Q Consensus 239 ~iwd~~~~~~~~~-------------------------~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~ 290 (371)
++||+++++.... ..+|...+.++.|. ++.+++++.|+++++||+...+...
T Consensus 212 ~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~ 291 (393)
T 4gq1_A 212 RIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYN 291 (393)
T ss_dssp EEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------
T ss_pred EEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCc
Confidence 9999988654322 23577788999986 6799999999999999976544211
Q ss_pred ee-----------------------cceEEEEecC-CCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC
Q 041206 291 EL-----------------------SSLFGMLDAE-AKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG 345 (371)
Q Consensus 291 ~~-----------------------~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~ 345 (371)
.+ ..+...++++ ++.++++|+.||.|++||+.+++...... +..+|++++|+|||
T Consensus 292 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG 371 (393)
T 4gq1_A 292 EISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDG 371 (393)
T ss_dssp ------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTS
T ss_pred eEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCC
Confidence 11 0111223333 34466788899999999999988776655 67899999999999
Q ss_pred -eEEeeCCCCcEEEEEcc
Q 041206 346 -LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 346 -~l~~~~~dg~i~iw~~~ 362 (371)
+||+++.+| +.+|++.
T Consensus 372 ~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 372 SHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp SEEEEEESSE-EEEEEEG
T ss_pred CEEEEEeCCC-eEEEEEe
Confidence 999998665 6666654
No 108
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=3.3e-29 Score=219.56 Aligned_cols=263 Identities=12% Similarity=0.092 Sum_probs=196.6
Q ss_pred EEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcC--CCCEEE
Q 041206 35 EEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPS--GSNKLY 112 (371)
Q Consensus 35 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~--~~~~l~ 112 (371)
...+.+|.+.|.+++++|...++. .++.++.+++|+.... ....+.+..+.+|...|++++|+| ++++|+
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~----~~~~dg~i~iw~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~ 75 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVA----TCSSDQHIKVFKLDKD----TSNWELSDSWRAHDSSIVAIDWASPEYGRIIA 75 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEE----EEETTSEEEEEEECSS----SCCEEEEEEEECCSSCEEEEEECCGGGCSEEE
T ss_pred cccCcccccceeEEEEcCCCCEEE----EeeCCCeEEEEECCCC----CCcceecceeccCCCcEEEEEEcCCCCCCEEE
Confidence 345689999999999999766433 3567889999994321 122367888999999999999999 699999
Q ss_pred EEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC----EEEEEeCCCeEE
Q 041206 113 SGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND----LLFAGSEGGVIS 188 (371)
Q Consensus 113 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~----~l~~~~~dg~v~ 188 (371)
+++.||.|++||+.+++....... -..+..+..+...|.+++|+|+ ++++++.||.|+
T Consensus 76 s~~~dg~v~vwd~~~~~~~~~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~ 137 (351)
T 3f3f_A 76 SASYDKTVKLWEEDPDQEECSGRR------------------WNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILR 137 (351)
T ss_dssp EEETTSCEEEEEECTTSCTTSSCS------------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEE
T ss_pred EEcCCCeEEEEecCCCcccccccC------------------cceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEE
Confidence 999999999999988742100000 0011122235667999999974 899999999999
Q ss_pred EEeccCCCCcce--eeEEE-------ecCc-ceEEEEecCC---ce-eEecccceeeeeCCCeEEEEECCCceE--EEEe
Q 041206 189 VWKGTFVANPFK--QVASI-------RAPL-WFCSLSSSND---TR-WNSKEEAAVFEFCGHTTRTWNLDNLEC--VQTL 252 (371)
Q Consensus 189 iwd~~~~~~~~~--~~~~~-------~~~~-~v~~~~~~~~---~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~--~~~~ 252 (371)
+||+++...... ..... ..+. .+.+++|+|+ +. ++++ +.++.+.+|+...++. +..+
T Consensus 138 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~ 210 (351)
T 3f3f_A 138 LYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVS-------ALEQAIIYQRGKDGKLHVAAKL 210 (351)
T ss_dssp EEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEE-------ETTEEEEEEECTTSCEEEEEEC
T ss_pred EecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEe-------cCCCcEEEEccCCCceeeeeec
Confidence 999988742211 10111 1455 8999999996 44 8888 9999998888887765 6778
Q ss_pred ecCCCcEEEEEEc--C----CeEEEEeCCCcEEEEEccCCCC--------------------------------------
Q 041206 253 KGHSDTVTSLLFW--D----EYLFSSSLDETIKIWLYTHTKN-------------------------------------- 288 (371)
Q Consensus 253 ~~~~~~v~~~~~~--~----~~l~s~~~dg~i~iwd~~~~~~-------------------------------------- 288 (371)
.+|...|.+++|+ + ++|++++.||.|++||++....
T Consensus 211 ~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (351)
T 3f3f_A 211 PGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAEL 290 (351)
T ss_dssp CCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------
T ss_pred CCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeee
Confidence 8999999999999 3 5899999999999999876410
Q ss_pred ------------cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeee
Q 041206 289 ------------NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARI 330 (371)
Q Consensus 289 ------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 330 (371)
..+...+..+.+.+++.+|++++.||.|++||+.+++....+
T Consensus 291 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 291 QSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred cccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 112235666667777779999999999999999987655443
No 109
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.2e-29 Score=219.33 Aligned_cols=258 Identities=9% Similarity=-0.011 Sum_probs=193.3
Q ss_pred eeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCee
Q 041206 61 CVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEI 140 (371)
Q Consensus 61 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 140 (371)
+..++.++.|++|+. .+++.+..+. ...|.++.|+|+ +++++.|++|++|+......+..+.....
T Consensus 51 l~sg~~Dg~v~iwd~--------~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~- 116 (343)
T 3lrv_A 51 CMCRCEDGALHFTQL--------KDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKV- 116 (343)
T ss_dssp EEEEEETTEEEEEEE--------SSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCE-
T ss_pred EEEECCCCcEEEEEC--------CCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcce-
Confidence 456789999999993 4556666666 577889999988 99999999999998764222211111110
Q ss_pred EEEeecCCEEEEecCCcEEEEE-eCCCCeeEEEEeC--C--EEEEEeCCCeEEEEeccCCCCcceeeEEEec-Cc-ceEE
Q 041206 141 GCLISEGSWVFLGLPNAVKSWR-VNAASVNALVVNN--D--LLFAGSEGGVISVWKGTFVANPFKQVASIRA-PL-WFCS 213 (371)
Q Consensus 141 ~~~~~~~~~~~~~~~~~i~~~~-~~~~~v~~~~~~~--~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~-~v~~ 213 (371)
++... .+...|.+++++| + ++++++.||.|++||++++ +....... +. .+.+
T Consensus 117 -----------------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~----~~~~~~~~~~~~~i~~ 175 (343)
T 3lrv_A 117 -----------------LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD----SQYIVHSAKSDVEYSS 175 (343)
T ss_dssp -----------------EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSS----CEEEEECCCSSCCCCE
T ss_pred -----------------eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCC----cEEEEEecCCCCceEE
Confidence 11111 2345799999999 5 9999999999999999988 55555543 34 8999
Q ss_pred EEecCCce-eEecccceeeeeCCCeEEEEECCCceEE-EEeec-CCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC
Q 041206 214 LSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECV-QTLKG-HSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN 288 (371)
Q Consensus 214 ~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~-~~~~~-~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~ 288 (371)
++|+|++. +++| +.||.|++||+++++.+ ..+.. |..+|.+++|+ +.+|++++ |+.|++||++..+.
T Consensus 176 ~~~~pdg~~lasg-------~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~ 247 (343)
T 3lrv_A 176 GVLHKDSLLLALY-------SPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVG 247 (343)
T ss_dssp EEECTTSCEEEEE-------CTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTT
T ss_pred EEECCCCCEEEEE-------cCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCc
Confidence 99999997 7888 99999999999999887 78888 99999999998 67899998 55999999988764
Q ss_pred ccee-------cce--EEEEecCCCCEEEEecC-CCeEEEEEcCCcceeeeecCCceEEEEEeCC---CC-eEEeeCCCC
Q 041206 289 NAEL-------SSL--FGMLDAEAKPVLFSSGK-DSAIRLYELPSFKLRARIFSRREVEVDQIGP---AG-LFFPGDASG 354 (371)
Q Consensus 289 ~~~~-------~~~--~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~---~~-~l~~~~~dg 354 (371)
...+ ..+ ..+.+.+++++|++++. |+.|++|++......... .++..++|.| +. .+++++.||
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~ 324 (343)
T 3lrv_A 248 TLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK---DEESALCLQSDTADFTDMDVVCGDG 324 (343)
T ss_dssp CBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE---EEEEECCC----CCCCEEEEEEETT
T ss_pred ceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe---cCceeEecCccccccceeEEEecCC
Confidence 3221 111 12455566669998887 999999999776544443 6788899998 66 899999999
Q ss_pred cEEEEEcccc
Q 041206 355 SVGVWKWLLA 364 (371)
Q Consensus 355 ~i~iw~~~~~ 364 (371)
.+.++-....
T Consensus 325 ~~~~~~~~~~ 334 (343)
T 3lrv_A 325 GIAAILKTND 334 (343)
T ss_dssp EEEEEEECSS
T ss_pred ceEEEEecCC
Confidence 9998865543
No 110
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=8.1e-28 Score=217.83 Aligned_cols=279 Identities=11% Similarity=0.021 Sum_probs=214.4
Q ss_pred eeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeE-----eeeCccCCeEEEEEcCC
Q 041206 33 RAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLM-----KLNGHKKAVTNVGLPSG 107 (371)
Q Consensus 33 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~l~~h~~~V~~~~~~~~ 107 (371)
+.+..+..+ ..+.+++++|.+.++. .+..++.+++|+ ..+++.+. .+.+|...|.+++|+|+
T Consensus 114 ~~~~~~~~~-~~~~~~~~s~~~~~~~----~~~~~~~i~~~d--------~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (433)
T 3bws_A 114 RFISRFKTG-FQPKSVRFIDNTRLAI----PLLEDEGMDVLD--------INSGQTVRLSPPEKYKKKLGFVETISIPEH 180 (433)
T ss_dssp EEEEEEECS-SCBCCCEESSSSEEEE----EBTTSSSEEEEE--------TTTCCEEEECCCHHHHTTCCEEEEEEEGGG
T ss_pred eEEEEEcCC-CCceEEEEeCCCeEEE----EeCCCCeEEEEE--------CCCCeEeeecCcccccccCCceeEEEEcCC
Confidence 444445433 4456788888444322 245667899999 33445555 56689999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EE-EEEeCC
Q 041206 108 SNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LL-FAGSEG 184 (371)
Q Consensus 108 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l-~~~~~d 184 (371)
++++++++.|+.|++||+++++.+..+.. +...+.+++|+|+ .+ ++++.+
T Consensus 181 ~~~~~s~~~d~~v~~~d~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~l~~~~~~~ 233 (433)
T 3bws_A 181 NELWVSQMQANAVHVFDLKTLAYKATVDL---------------------------TGKWSKILLYDPIRDLVYCSNWIS 233 (433)
T ss_dssp TEEEEEEGGGTEEEEEETTTCCEEEEEEC---------------------------SSSSEEEEEEETTTTEEEEEETTT
T ss_pred CEEEEEECCCCEEEEEECCCceEEEEEcC---------------------------CCCCeeEEEEcCCCCEEEEEecCC
Confidence 99999999999999999999988877763 3345889999987 55 455589
Q ss_pred CeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eEecccceeeee--------CCCeEEEEECCCceEEEEeecC
Q 041206 185 GVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEF--------CGHTTRTWNLDNLECVQTLKGH 255 (371)
Q Consensus 185 g~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~--------~dg~i~iwd~~~~~~~~~~~~~ 255 (371)
+.|++||+.++ +....+..+..+.+++|+|+++ ++++ + .|+.|++||+++++.+..+. |
T Consensus 234 ~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~g~~l~~~-------~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~ 301 (433)
T 3bws_A 234 EDISVIDRKTK----LEIRKTDKIGLPRGLLLSKDGKELYIA-------QFSASNQESGGGRLGIYSMDKEKLIDTIG-P 301 (433)
T ss_dssp TEEEEEETTTT----EEEEECCCCSEEEEEEECTTSSEEEEE-------EEESCTTCSCCEEEEEEETTTTEEEEEEE-E
T ss_pred CcEEEEECCCC----cEEEEecCCCCceEEEEcCCCCEEEEE-------ECCCCccccCCCeEEEEECCCCcEEeecc-C
Confidence 99999999987 6777776666899999999995 6666 5 58899999999998877664 5
Q ss_pred CCcEEEEEEc--CC-eEEEEeCCCcEEEEEccCCCCccee---cceEEEEecCCCCEEEEecC---------------CC
Q 041206 256 SDTVTSLLFW--DE-YLFSSSLDETIKIWLYTHTKNNAEL---SSLFGMLDAEAKPVLFSSGK---------------DS 314 (371)
Q Consensus 256 ~~~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~---------------d~ 314 (371)
...+.+++|+ ++ ++++++.|+.|++||+...+....+ ..+..+.+.++++++++++. ||
T Consensus 302 ~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg 381 (433)
T 3bws_A 302 PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLG 381 (433)
T ss_dssp EECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCC
T ss_pred CCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccce
Confidence 6688999998 44 5567789999999998865432211 23445556666667777665 57
Q ss_pred eEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeC-CCCcEEEEEccc
Q 041206 315 AIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGD-ASGSVGVWKWLL 363 (371)
Q Consensus 315 ~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~-~dg~i~iw~~~~ 363 (371)
.|++||+.+++.+..+.....+.+++|+|++ .|++++ .|+.|++|++..
T Consensus 382 ~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 382 KVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 9999999999988888877889999999999 766655 599999999863
No 111
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.7e-28 Score=215.01 Aligned_cols=265 Identities=10% Similarity=0.086 Sum_probs=207.2
Q ss_pred EEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCC-EEEEE
Q 041206 36 EREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSN-KLYSG 114 (371)
Q Consensus 36 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~-~l~s~ 114 (371)
....+|.+.|.+++++|...++. .++.++.+++|+.... ........+.+|...|++++|+|+++ +|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~----~~~~d~~v~iw~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 75 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLL----ITSWDGSLTVYKFDIQ-----AKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEE----EEETTSEEEEEEEETT-----TTEEEEEEEEECSSCEEEEEEEESSSEEEEEE
T ss_pred ecccCCCCcEEEEEEcCCCCEEE----EEcCCCeEEEEEeCCC-----CccccceeeeecCCceEEEEECCCCCcEEEEE
Confidence 33458999999999999765432 3567889999994321 11124566679999999999999999 99999
Q ss_pred eCCCcEEEEEC-CCCceEEEEe--CCCeeEEEeec-CCEEEE-ecCCcEEEEEeCC---------C----------CeeE
Q 041206 115 SRDGRVSVWDR-DSGRCVNVIT--NGAEIGCLISE-GSWVFL-GLPNAVKSWRVNA---------A----------SVNA 170 (371)
Q Consensus 115 ~~dg~v~iwd~-~~~~~~~~~~--~~~~~~~~~~~-~~~~~~-~~~~~i~~~~~~~---------~----------~v~~ 170 (371)
+.||.|++||+ .+++...... +...+.++.+. +.++++ +.++.|++||+.+ . .|.+
T Consensus 76 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 155 (342)
T 1yfq_A 76 TVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFT 155 (342)
T ss_dssp ETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEE
T ss_pred cCCCeEEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEE
Confidence 99999999999 8887644444 56677777654 566655 6789999999765 3 7899
Q ss_pred EEEeCCEEEEEeCCCeEEEEeccC-CCCcceeeEEEecCc-ceEEEEecC-Cce-eEecccceeeeeCCCeEEEEECCCc
Q 041206 171 LVVNNDLLFAGSEGGVISVWKGTF-VANPFKQVASIRAPL-WFCSLSSSN-DTR-WNSKEEAAVFEFCGHTTRTWNLDNL 246 (371)
Q Consensus 171 ~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~-~v~~~~~~~-~~~-l~~~~~~~~~~~~dg~i~iwd~~~~ 246 (371)
++++++.+++++.++.|++||+++ ... ........+. .+.+++|+| ++. ++++ +.||.|++||++..
T Consensus 156 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~i~~i~~~~~~~~~l~~~-------~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 156 MDTNSSRLIVGMNNSQVQWFRLPLCEDD--NGTIEESGLKYQIRDVALLPKEQEGYACS-------SIDGRVAVEFFDDQ 226 (342)
T ss_dssp EEECSSEEEEEESTTEEEEEESSCCTTC--CCEEEECSCSSCEEEEEECSGGGCEEEEE-------ETTSEEEEEECCTT
T ss_pred EEecCCcEEEEeCCCeEEEEECCccccc--cceeeecCCCCceeEEEECCCCCCEEEEE-------ecCCcEEEEEEcCC
Confidence 999999999999999999999998 532 2233444566 999999999 886 8889 99999999999887
Q ss_pred ------eEEEEeecCCC---------cEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC----cce-ecceEEEEecCCC
Q 041206 247 ------ECVQTLKGHSD---------TVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN----NAE-LSSLFGMLDAEAK 304 (371)
Q Consensus 247 ------~~~~~~~~~~~---------~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~----~~~-~~~~~~~~~~~~~ 304 (371)
+....+..|.. .|.+++|+ +++|++++.||.|++||+...+. ..+ ...+..+. +++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~ 304 (342)
T 1yfq_A 227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSD 304 (342)
T ss_dssp CCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECS
T ss_pred CcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCC
Confidence 77788888865 99999998 67999999999999999876553 122 23445555 455
Q ss_pred CEEEEecCCCe-EEEEE
Q 041206 305 PVLFSSGKDSA-IRLYE 320 (371)
Q Consensus 305 ~~l~~~~~d~~-i~iwd 320 (371)
.+|++++.||. .+.|.
T Consensus 305 ~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 305 NILCLATSDDTFKTNAA 321 (342)
T ss_dssp SEEEEEEECTHHHHCSS
T ss_pred CeEEEEecCCccccccc
Confidence 59999999998 55544
No 112
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=1.3e-28 Score=220.92 Aligned_cols=258 Identities=15% Similarity=0.168 Sum_probs=197.0
Q ss_pred ceeeEeeeCccCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeC
Q 041206 86 LATLMKLNGHKKAVTNVGLPS-GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVN 164 (371)
Q Consensus 86 ~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 164 (371)
.+....+++|.+.|++++|+| ++++|++|+.||.|++||+.+++....+........ ... ..+.|
T Consensus 33 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~~-------------~~~~~ 98 (408)
T 4a11_B 33 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSI-GRD-------------HPDVH 98 (408)
T ss_dssp CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEE-CTT-------------CTTCC
T ss_pred CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccc-ccc-------------ccccC
Confidence 456778899999999999999 999999999999999999998865544431110000 000 00115
Q ss_pred CCCeeEEEEeC-C--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCc----eeEecccceeeeeCCCe
Q 041206 165 AASVNALVVNN-D--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDT----RWNSKEEAAVFEFCGHT 237 (371)
Q Consensus 165 ~~~v~~~~~~~-~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~l~~~~~~~~~~~~dg~ 237 (371)
...|.+++|+| + ++++++.||.|++||+.++ +....+.....+.++.+++.+ .++++ +.++.
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 167 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL----QTADVFNFEETVYSHHMSPVSTKHCLVAVG-------TRGPK 167 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT----EEEEEEECSSCEEEEEECSSCSSCCEEEEE-------ESSSS
T ss_pred CCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC----ccceeccCCCceeeeEeecCCCCCcEEEEE-------cCCCe
Confidence 56799999998 3 8999999999999999988 777777644489999998853 37888 99999
Q ss_pred EEEEECCCceEEEEeecCCCcEEEEEEc--CC-eEEEEeCCCcEEEEEccCCCC--------------------cceecc
Q 041206 238 TRTWNLDNLECVQTLKGHSDTVTSLLFW--DE-YLFSSSLDETIKIWLYTHTKN--------------------NAELSS 294 (371)
Q Consensus 238 i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~--------------------~~~~~~ 294 (371)
|++||+++++.+..+..|...|.+++|+ ++ ++++++.||.|++||++.... ..+...
T Consensus 168 v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (408)
T 4a11_B 168 VQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGK 247 (408)
T ss_dssp EEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSC
T ss_pred EEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCc
Confidence 9999999999999999999999999999 34 589999999999999876541 123345
Q ss_pred eEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecC------CceEEEEEeCCCC-eEEeeCCCCcEEEEEcccccee
Q 041206 295 LFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFS------RREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 295 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~ 367 (371)
+..+.+.+++.+|++++.|+.|++||+.+++....... ...+........+ .+++++.|+.|++||+.+++..
T Consensus 248 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 327 (408)
T 4a11_B 248 VNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI 327 (408)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE
T ss_pred eeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce
Confidence 66666777777999999999999999999876554432 1122222222233 7777788999999999877654
Q ss_pred c
Q 041206 368 K 368 (371)
Q Consensus 368 ~ 368 (371)
.
T Consensus 328 ~ 328 (408)
T 4a11_B 328 T 328 (408)
T ss_dssp E
T ss_pred e
Confidence 3
No 113
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-29 Score=227.06 Aligned_cols=242 Identities=8% Similarity=0.046 Sum_probs=189.2
Q ss_pred eCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEee--cCCEEEEecCCcEEEEEeC------
Q 041206 93 NGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLIS--EGSWVFLGLPNAVKSWRVN------ 164 (371)
Q Consensus 93 ~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~------ 164 (371)
+.-...|.+++|+|||+++||++.|++|+ |...++.+. .+...+.++.+ ++ .++.+.+|+..
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~--gh~~~v~~V~FsPdg------~~~~~~~~~~~~~~~~~ 81 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDIN--CNSKNLFHVKEFPLE------FENKLDFELAQQNGLLN 81 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCS--SBGGGTEEEEEECCC------CCCTTTTSCCCSSCSST
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceee--cccccceec--CCCccEEEEEECCCC------CcceEEEEeCCCceEee
Confidence 44568999999999999999999999999 766665542 22344555543 33 44445555432
Q ss_pred ---CCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc------ceEEEEecCCce-eEecccceeee
Q 041206 165 ---AASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL------WFCSLSSSNDTR-WNSKEEAAVFE 232 (371)
Q Consensus 165 ---~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~-l~~~~~~~~~~ 232 (371)
...|.+++|+|+ .|++++.||.|++||... .+..+. |. .+.+++|+|||+ |++|
T Consensus 82 ~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~------~l~~l~-~~~~~~~~sv~svafSPDG~~LAsg------- 147 (588)
T 2j04_A 82 SQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVG------- 147 (588)
T ss_dssp TSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE------EEEECC-CSSCSTTTCEEEEEECSSSSCEEEE-------
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc------eeeecc-CCCccccccEEEEEEcCCCCEEEEE-------
Confidence 347999999999 999999999999999543 455555 54 399999999997 8999
Q ss_pred eCCCeEEEEECCCce-------EEEEe----ecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCCc--------ceec
Q 041206 233 FCGHTTRTWNLDNLE-------CVQTL----KGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKNN--------AELS 293 (371)
Q Consensus 233 ~~dg~i~iwd~~~~~-------~~~~~----~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------~~~~ 293 (371)
+.||+|++||+.+++ .+.++ .+|...|.+++|+++-+++++.|+++++||+...... .+..
T Consensus 148 s~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~~h~~ 227 (588)
T 2j04_A 148 NEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASRR 227 (588)
T ss_dssp ETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSSCCCEEEEECCCSS
T ss_pred cCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCccccceeeecccccC
Confidence 999999999999875 35676 5677899999999444999999999999998766531 2222
Q ss_pred ceEEEEecCCCCEEEEecCCCeEEEEEcCCcce-eeeecCCceEEEEEe--CCCC-eEEeeCCCCcEEEEEcc
Q 041206 294 SLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKL-RARIFSRREVEVDQI--GPAG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 294 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~v~~~~~--s~~~-~l~~~~~dg~i~iw~~~ 362 (371)
.+..+.+. + ..+++++ ++.|++||+.+++. .....|.+.|..++| +|++ .+++++.||+ ++|...
T Consensus 228 ~V~svaFs-g-~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 228 KITDLKIV-D-YKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CCCCEEEE-T-TEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred cEEEEEEE-C-CEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 34444555 4 5888887 69999999999887 445468899999999 9999 9999999999 999975
No 114
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1.7e-28 Score=220.18 Aligned_cols=238 Identities=14% Similarity=0.115 Sum_probs=185.6
Q ss_pred CeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeC-
Q 041206 98 AVTNVGLPSGSNK-LYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNN- 175 (371)
Q Consensus 98 ~V~~~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~- 175 (371)
....++++|+... +++++.||.|++|++........ .+..+..|.+.|.+++|+|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~-----------------------~~~~~~~h~~~V~~~~~~p~ 92 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK-----------------------NVPLVCGHTAPVLDIAWCPH 92 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT-----------------------TCCCBCCCSSCEEEEEECTT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC-----------------------CCceEecCCCCEEEEEeCCC
Confidence 3446888887654 44578999999999865432110 0011122566899999998
Q ss_pred C--EEEEEeCCCeEEEEeccCCCCc---ceeeEEEecCc-ceEEEEecCCc--eeEecccceeeeeCCCeEEEEECCCce
Q 041206 176 D--LLFAGSEGGVISVWKGTFVANP---FKQVASIRAPL-WFCSLSSSNDT--RWNSKEEAAVFEFCGHTTRTWNLDNLE 247 (371)
Q Consensus 176 ~--~l~~~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~-~v~~~~~~~~~--~l~~~~~~~~~~~~dg~i~iwd~~~~~ 247 (371)
+ +|++|+.||.|++||+.++... .+++..+.+|. .|.+++|+|++ .++++ +.|+.|++||+++++
T Consensus 93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~-------~~dg~i~iwd~~~~~ 165 (402)
T 2aq5_A 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA-------GCDNVILVWDVGTGA 165 (402)
T ss_dssp CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEE-------ETTSCEEEEETTTTE
T ss_pred CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEE-------cCCCEEEEEECCCCC
Confidence 5 9999999999999999886321 13567888999 99999999997 38899 999999999999999
Q ss_pred EEEEe--ecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCccee-----c-ceEEEEecCCCCEEEEe---cCCC
Q 041206 248 CVQTL--KGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAEL-----S-SLFGMLDAEAKPVLFSS---GKDS 314 (371)
Q Consensus 248 ~~~~~--~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~-~~~~~~~~~~~~~l~~~---~~d~ 314 (371)
.+..+ ..|...|.+++|+ +++|++++.|+.|++||++..+....+ . .+..+.+.+++.+|++| +.|+
T Consensus 166 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~ 245 (402)
T 2aq5_A 166 AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSER 245 (402)
T ss_dssp EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCE
T ss_pred ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCc
Confidence 99999 7899999999998 679999999999999998775532221 1 13444555566688888 7999
Q ss_pred eEEEEEcCCcce---eeeecCCceEEEEEeCCCC-eE-EeeCCCCcEEEEEccccc
Q 041206 315 AIRLYELPSFKL---RARIFSRREVEVDQIGPAG-LF-FPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 315 ~i~iwd~~~~~~---~~~~~~~~~v~~~~~s~~~-~l-~~~~~dg~i~iw~~~~~~ 365 (371)
.|++||+++++. ...+.+...+.+++|+|++ .| ++|+.||.|++|++.+++
T Consensus 246 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 246 QVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp EEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred eEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 999999998764 2233467789999999999 55 567789999999998766
No 115
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=2.6e-27 Score=213.77 Aligned_cols=266 Identities=18% Similarity=0.249 Sum_probs=208.4
Q ss_pred cCCCCceeeccCcc------cccceeEEEEE--eeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCc
Q 041206 15 HSEGGETMMSDDDD------LMKGRAEEREE--MFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSL 86 (371)
Q Consensus 15 ~sp~g~~l~~~~~d------~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (371)
+|++ ..||++.+. ..++++...+. +|...|.+++|+|.+.++. .++.++.|++|+ ...+
T Consensus 113 wS~~-n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~la----sgs~Dg~v~iWd--------~~~~ 179 (420)
T 4gga_A 113 WSSG-NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLA----VGTSSAEVQLWD--------VQQQ 179 (420)
T ss_dssp ECTT-SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEE----EEETTSCEEEEE--------TTTT
T ss_pred ECCC-CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEE----EEECCCeEEEEE--------cCCC
Confidence 4554 478887644 55788777665 5677899999999766543 467889999999 4567
Q ss_pred eeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCC
Q 041206 87 ATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGR-CVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNA 165 (371)
Q Consensus 87 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 165 (371)
+.++.+.+|...|.+++++ +.+|++|+.|+.+++||..... .+..+. .|.
T Consensus 180 ~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~---------------------------~h~ 230 (420)
T 4gga_A 180 KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLS---------------------------GHS 230 (420)
T ss_dssp EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE---------------------------CCS
T ss_pred cEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEec---------------------------ccc
Confidence 8999999999999998885 6799999999999999988654 333333 355
Q ss_pred CCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce--eE--ecccceeeeeCCCeE
Q 041206 166 ASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR--WN--SKEEAAVFEFCGHTT 238 (371)
Q Consensus 166 ~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~--l~--~~~~~~~~~~~dg~i 238 (371)
..+..+.+.++ ++++++.|+.+++|+...+......+.....|. .|.+++|+|++. ++ +| +.|+.|
T Consensus 231 ~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g-------s~D~~I 303 (420)
T 4gga_A 231 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG-------TSDRHI 303 (420)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC-------TTTCEE
T ss_pred cceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee-------cCCCEE
Confidence 57889999887 999999999999999988765445667778888 999999999764 43 34 689999
Q ss_pred EEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEe--CCCcEEEEEccCCCCc----ceecceEEEEecCCCCEEEEe
Q 041206 239 RTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSS--LDETIKIWLYTHTKNN----AELSSLFGMLDAEAKPVLFSS 310 (371)
Q Consensus 239 ~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~--~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~l~~~ 310 (371)
++||+++++++..+..| ..+.++.|+ ++.+++++ .|+.|++||+...+.. ++...+..+.+.+++.+|++|
T Consensus 304 ~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~ 382 (420)
T 4gga_A 304 RIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA 382 (420)
T ss_dssp EEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred EEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 99999999999888855 567788887 56666654 7999999998876642 333456777777777799999
Q ss_pred cCCCeEEEEEcCCcceeeee
Q 041206 311 GKDSAIRLYELPSFKLRARI 330 (371)
Q Consensus 311 ~~d~~i~iwd~~~~~~~~~~ 330 (371)
+.|++|+|||+.+..+..+.
T Consensus 383 s~D~tvriWdv~~~~~~~~~ 402 (420)
T 4gga_A 383 AADETLRLWRCFELDPARRR 402 (420)
T ss_dssp ETTTEEEEECCSCSSCC---
T ss_pred ecCCeEEEEECCCCCccchh
Confidence 99999999999876555443
No 116
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=3.6e-28 Score=206.29 Aligned_cols=286 Identities=10% Similarity=0.009 Sum_probs=182.8
Q ss_pred cccceeEEEEEeeccceeeeeeeeccee-ec---cceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEE
Q 041206 29 LMKGRAEEREEMFGFGLAAMAIRVCNNW-IS---DSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGL 104 (371)
Q Consensus 29 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~ 104 (371)
....+++..++...+. ..+..+. -.| .. ..|+-......+++|+.. .....++++++++|+.+|..+.|
T Consensus 22 ~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~lw~~~-----~~~~~~~~~~~~~~~~~v~~~~~ 94 (356)
T 2w18_A 22 PGNLQLVSELKNPSGS-CSVDVSA-MFWERAGCKEPCIITACEDVVSLWKAL-----DAWQWEKLYTWHFAEVPVLQIVP 94 (356)
T ss_dssp --CEEEEEEECCCCSS-CEEEEEE-EEEC----CEEEEEEEESSEEEEEEES-----SSSBEEEEEEEECCSSCEEEECC
T ss_pred cceeeeeehhcCCCCC-eEEEEee-eeeccCCCCccEEEEeccceEEEcccC-----CCccceeeEEEeccCceeEEEEE
Confidence 3456677777665433 1222111 111 11 125555666789999921 11234899999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEe--ec----CCEEEEecCCcEEEEEeCCCCeeEEEEeCCEE
Q 041206 105 PSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLI--SE----GSWVFLGLPNAVKSWRVNAASVNALVVNNDLL 178 (371)
Q Consensus 105 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~l 178 (371)
.||..-|+...- |. ++ ...+..+. ++ +.+++.+. +.+++|++ ....+
T Consensus 95 ~~~~~~~~~~~~-~~-----~~----------~~~v~sla~spd~~~~~~~l~s~g-~~~~v~~l----------~~g~l 147 (356)
T 2w18_A 95 VPDVYNLVCVAL-GN-----LE----------IREIRALFCSSDDESEKQVLLKSG-NIKAVLGL----------TKRRL 147 (356)
T ss_dssp CTTCCSCEEEEE-CS-----SS----------EEEEEEECC------CCEEEEEEE-EEEEEEEE----------TTTEE
T ss_pred cCcccceeeeee-cc-----cc----------ccceEEEEECCCccccccEEEeCC-CeEEEEec----------CCCcE
Confidence 996533222111 10 11 01112222 22 23333322 33555543 22244
Q ss_pred EEEe---CCCeEEEEeccC-CCCcceeeEEEecCc-ceEEEEecC---Cce-eEecccceeeeeCCCeEEEEECCCceEE
Q 041206 179 FAGS---EGGVISVWKGTF-VANPFKQVASIRAPL-WFCSLSSSN---DTR-WNSKEEAAVFEFCGHTTRTWNLDNLECV 249 (371)
Q Consensus 179 ~~~~---~dg~v~iwd~~~-~~~~~~~~~~~~~~~-~v~~~~~~~---~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~ 249 (371)
+..+ .|+.|++|++.. + +.+..+..|. .++.++|++ ++. ++++ +.|++|+|||+++++++
T Consensus 148 v~ss~~g~d~~V~~~~~s~dG----~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSg-------S~D~TIkIWDl~TGk~l 216 (356)
T 2w18_A 148 VSSSGTLSDQQVEVMTFAEDG----GGKENQFLMPPEETILTFAEVQGMQEALLGT-------TIMNNIVIWNLKTGQLL 216 (356)
T ss_dssp EEEESSSTTCEEEEEEECTTS----CEEEEEEECCCSSCEEEEEEEETSTTEEEEE-------ETTSEEEEEETTTCCEE
T ss_pred EEecccCCCCcEEEEEECCCC----ceeeeeccCCCceeeEEeeccCCCCceEEEe-------cCCCcEEEEECCCCcEE
Confidence 4443 499999999955 5 6777888888 888888888 444 8999 99999999999999999
Q ss_pred EEeecCCC---cEEEEEEc--CCeE------------EEEeCCCcEEEEEccCCCCccee---------cceEEEEecCC
Q 041206 250 QTLKGHSD---TVTSLLFW--DEYL------------FSSSLDETIKIWLYTHTKNNAEL---------SSLFGMLDAEA 303 (371)
Q Consensus 250 ~~~~~~~~---~v~~~~~~--~~~l------------~s~~~dg~i~iwd~~~~~~~~~~---------~~~~~~~~~~~ 303 (371)
+++.+|.. .+.+++|+ +.++ ++|+.|++|++||..+.+..... ...... ...
T Consensus 217 ~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg--~~s 294 (356)
T 2w18_A 217 KKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEG--DVK 294 (356)
T ss_dssp EEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEE--EEE
T ss_pred EEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcc--ccC
Confidence 99987543 56677887 4444 67889999999998766432111 001100 011
Q ss_pred CCEEEEecCCCeEEEEEcCCcceeeeec-CCce-EEEEEeCCCC-eEEeeCCCCcEEEEEc
Q 041206 304 KPVLFSSGKDSAIRLYELPSFKLRARIF-SRRE-VEVDQIGPAG-LFFPGDASGSVGVWKW 361 (371)
Q Consensus 304 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~-v~~~~~s~~~-~l~~~~~dg~i~iw~~ 361 (371)
+.++++++.|++|+|||+.+++++..+. |... +..++|+||| +|++|+.|++|+|||+
T Consensus 295 g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 295 DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 3378999999999999999999999987 4444 4468999999 9999999999999996
No 117
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=8.7e-27 Score=201.98 Aligned_cols=232 Identities=18% Similarity=0.208 Sum_probs=187.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC-
Q 041206 98 AVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND- 176 (371)
Q Consensus 98 ~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~- 176 (371)
..++|+||+++ +||+|. |++|+|||+.+++++..+..+. |...|.+++|+|+
T Consensus 27 y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~-------------------------~~~~V~~v~~~~~~ 79 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQ-------------------------PGEYISSVAWIKEG 79 (318)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCS-------------------------TTCCEEEEEECTTS
T ss_pred cceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecC-------------------------CCCeEEEEEECCCC
Confidence 35789999875 777664 9999999999999988876432 3446999999998
Q ss_pred -EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCc-eEEEEee
Q 041206 177 -LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNL-ECVQTLK 253 (371)
Q Consensus 177 -~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~ 253 (371)
++++|+.||.|++||++++ +.+..+.+|. .+.++.+.+ ..++++ +.++.+++|+.... ..+..+.
T Consensus 80 ~~l~sgs~Dg~v~iw~~~~~----~~~~~~~~h~~~~~~~~~~~-~~l~s~-------~~~~~~~~~~~~~~~~~~~~~~ 147 (318)
T 4ggc_A 80 NYLAVGTSSAEVQLWDVQQQ----KRLRNMTSHSARVGSLSWNS-YILSSG-------SRSGHIHHHDVRVAEHHVATLS 147 (318)
T ss_dssp SEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEEET-TEEEEE-------ETTSEEEEEETTSSSCEEEEEE
T ss_pred CEEEEEECCCcEEEeecCCc----eeEEEecCccceEEEeecCC-CEEEEE-------ecCCceEeeecCCCceeEEEEc
Confidence 9999999999999999998 8899999999 888777655 358888 99999999999865 4567888
Q ss_pred cCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCc--------ceecceEEE-EecCCCCEE--EEecCCCeEEEEE
Q 041206 254 GHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNN--------AELSSLFGM-LDAEAKPVL--FSSGKDSAIRLYE 320 (371)
Q Consensus 254 ~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~--------~~~~~~~~~-~~~~~~~~l--~~~~~d~~i~iwd 320 (371)
+|...+..+.+. ++++++++.|+.|++||++..+.. .....+... +.+.+...+ ++++.++.|++||
T Consensus 148 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd 227 (318)
T 4ggc_A 148 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 227 (318)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEE
T ss_pred CccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEe
Confidence 999999999998 789999999999999998765531 111223333 334444444 4677899999999
Q ss_pred cCCcceeeeecCCceEEEEEeCCCC-eEE--eeCCCCcEEEEEccccceec
Q 041206 321 LPSFKLRARIFSRREVEVDQIGPAG-LFF--PGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 321 ~~~~~~~~~~~~~~~v~~~~~s~~~-~l~--~~~~dg~i~iw~~~~~~~~~ 368 (371)
...........+...+..+.|+|++ .++ +|+.|+.|++||+.+++...
T Consensus 228 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~ 278 (318)
T 4ggc_A 228 VCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA 278 (318)
T ss_dssp TTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE
T ss_pred cccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEE
Confidence 9999888888888999999999998 444 45689999999998876543
No 118
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-28 Score=236.23 Aligned_cols=243 Identities=22% Similarity=0.225 Sum_probs=193.0
Q ss_pred EEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCC--CCEEE
Q 041206 35 EEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSG--SNKLY 112 (371)
Q Consensus 35 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~--~~~l~ 112 (371)
+..+.+|.+.|.+++++|.+.++. .++.++.|++|+.. ....+.+..+.+|.++|++++|+|+ +++|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~la----tg~~dg~I~vwd~~------~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~ 71 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLA----TCSSDKTIKIFEVE------GETHKLIDTLTGHEGPVWRVDWAHPKFGTILA 71 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEE----EEETTTEEEEEEEE------TTEEEEEEEECCCSSCEEEEEECCTTSCSEEE
T ss_pred eeecccCcceeEEEEECCCCCeEE----EEECCCcEEEEecC------CCCCccceeccCCcCceEEEEecCCCCCCEEE
Confidence 356789999999999999765433 45678999999942 2356788999999999999999987 99999
Q ss_pred EEeCCCcEEEEECCCCc--eEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC----EEEEEeCCCe
Q 041206 113 SGSRDGRVSVWDRDSGR--CVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND----LLFAGSEGGV 186 (371)
Q Consensus 113 s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~----~l~~~~~dg~ 186 (371)
+|+.||.|++||+.+++ ....+.. |...|.+++|+|+ .+++|+.||.
T Consensus 72 s~s~Dg~I~vwd~~~~~~~~~~~~~~---------------------------h~~~V~~v~~sp~~~~~~l~sgs~dg~ 124 (753)
T 3jro_A 72 SCSYDGKVLIWKEENGRWSQIAVHAV---------------------------HSASVNSVQWAPHEYGPLLLVASSDGK 124 (753)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECC---------------------------CSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred EEeCCCeEEEEECCCCcccccccccC---------------------------CCCCeEEEEECCCCCCCEEEEEeCCCc
Confidence 99999999999999886 3333332 4557999999875 8999999999
Q ss_pred EEEEeccCCCCcceeeEEEecCc-ceEEEEecCC-------------ce-eEecccceeeeeCCCeEEEEECCCc----e
Q 041206 187 ISVWKGTFVANPFKQVASIRAPL-WFCSLSSSND-------------TR-WNSKEEAAVFEFCGHTTRTWNLDNL----E 247 (371)
Q Consensus 187 v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~-------------~~-l~~~~~~~~~~~~dg~i~iwd~~~~----~ 247 (371)
|++||+..... .....+..|. .|.+++|+|. +. +++| +.||.|++||++++ .
T Consensus 125 I~vwdl~~~~~--~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sg-------s~dg~I~iwd~~~~~~~~~ 195 (753)
T 3jro_A 125 VSVVEFKENGT--TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG-------GADNLVKIWKYNSDAQTYV 195 (753)
T ss_dssp EEEEECCSSSC--CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEE-------ETTSCEEEEEEETTTTEEE
T ss_pred EEEEEeecCCC--cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEE-------ECCCeEEEEeccCCcccce
Confidence 99999987633 3345667788 9999999994 54 8888 99999999999876 6
Q ss_pred EEEEeecCCCcEEEEEEc-----CCeEEEEeCCCcEEEEEccCCCC---------cceecceEEEEecCCCCEEEEecCC
Q 041206 248 CVQTLKGHSDTVTSLLFW-----DEYLFSSSLDETIKIWLYTHTKN---------NAELSSLFGMLDAEAKPVLFSSGKD 313 (371)
Q Consensus 248 ~~~~~~~~~~~v~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~d 313 (371)
+...+.+|..+|.+++|+ +++|++++.||.|++||+..... ..+...+..+.+.+++.++++++.|
T Consensus 196 ~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~D 275 (753)
T 3jro_A 196 LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD 275 (753)
T ss_dssp EEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSS
T ss_pred eeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCC
Confidence 677888999999999998 35899999999999999877531 1122344455566666699999999
Q ss_pred CeEEEEEcCC
Q 041206 314 SAIRLYELPS 323 (371)
Q Consensus 314 ~~i~iwd~~~ 323 (371)
|.|++||+..
T Consensus 276 g~I~vwd~~~ 285 (753)
T 3jro_A 276 NKVTLWKENL 285 (753)
T ss_dssp SCEECCBCCS
T ss_pred CEEEEEecCC
Confidence 9999999984
No 119
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=4.3e-28 Score=220.43 Aligned_cols=270 Identities=9% Similarity=0.125 Sum_probs=203.0
Q ss_pred eeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCC---CccCCceeeEeeeCcc------------CCeEEEEE
Q 041206 40 MFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGD---NTTNSLATLMKLNGHK------------KAVTNVGL 104 (371)
Q Consensus 40 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~l~~h~------------~~V~~~~~ 104 (371)
.|.+.|.+++++|...++. .++.++.|++|+...... ......+....+++|. +.|++++|
T Consensus 26 ~~~~~V~~v~~s~~g~~la----~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~ 101 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLA----TGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW 101 (447)
T ss_dssp CGGGSEEEEEECSSSSEEE----EEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE
T ss_pred cccCcEEEEEECCCCCEEE----EEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEE
Confidence 3678999999999766543 467789999999543211 1112344788999998 88999999
Q ss_pred cCCC--CEEEEEeCCCcEEEEECCCCceE---------------------------------------EEE--eCCCeeE
Q 041206 105 PSGS--NKLYSGSRDGRVSVWDRDSGRCV---------------------------------------NVI--TNGAEIG 141 (371)
Q Consensus 105 ~~~~--~~l~s~~~dg~v~iwd~~~~~~~---------------------------------------~~~--~~~~~~~ 141 (371)
+|++ .+|++++.|++|++||+.+++.. ..+ .+...+.
T Consensus 102 ~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 181 (447)
T 3dw8_B 102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHIN 181 (447)
T ss_dssp CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCC
T ss_pred cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceE
Confidence 9998 79999999999999998765432 122 2345566
Q ss_pred EEee--cCCEEEEecCCcEEEEEeCC-------------------CCeeEEEEeCC---EEEEEeCCCeEEEEeccCCCC
Q 041206 142 CLIS--EGSWVFLGLPNAVKSWRVNA-------------------ASVNALVVNND---LLFAGSEGGVISVWKGTFVAN 197 (371)
Q Consensus 142 ~~~~--~~~~~~~~~~~~i~~~~~~~-------------------~~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~ 197 (371)
++.+ ++.+++++.|+.|++||+.. ..|.+++|+|+ ++++|+.||.|++||++++..
T Consensus 182 ~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 261 (447)
T 3dw8_B 182 SISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL 261 (447)
T ss_dssp EEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred EEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence 6654 67888888899999999872 25899999985 899999999999999998732
Q ss_pred cceeeEEEecCc-------------ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCC-ceEEEEeecCCCc----
Q 041206 198 PFKQVASIRAPL-------------WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDN-LECVQTLKGHSDT---- 258 (371)
Q Consensus 198 ~~~~~~~~~~~~-------------~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~---- 258 (371)
.......+..|. .|.+++|+|+++ ++++ +. +.|++||+++ ++++..+.+|...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-------~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l 333 (447)
T 3dw8_B 262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTR-------DY-LSVKVWDLNMENRPVETYQVHEYLRSKL 333 (447)
T ss_dssp SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEE-------ES-SEEEEEETTCCSSCSCCEESCGGGTTTH
T ss_pred ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEe-------eC-CeEEEEeCCCCccccceeeccccccccc
Confidence 112256676664 699999999997 6777 77 9999999997 8888899888642
Q ss_pred -----------EEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcc-----------------------------------
Q 041206 259 -----------VTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNA----------------------------------- 290 (371)
Q Consensus 259 -----------v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~----------------------------------- 290 (371)
+..++|+ +++|++++.||.|++||+...+...
T Consensus 334 ~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (447)
T 3dw8_B 334 CSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSL 413 (447)
T ss_dssp HHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGC
T ss_pred cccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccccccccccc
Confidence 2348888 6799999999999999977654210
Q ss_pred -eecceEEEEecCCCCEEEEecCCCeEEEEEcC
Q 041206 291 -ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELP 322 (371)
Q Consensus 291 -~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 322 (371)
....+..+.+.+.+.+|++++.++ +++|..+
T Consensus 414 ~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 414 DFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred ccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 011344456667777999888775 7787643
No 120
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=1.2e-27 Score=216.67 Aligned_cols=257 Identities=15% Similarity=0.176 Sum_probs=198.2
Q ss_pred EEEEeeccceeeeeeeec-ceeeccceeeCCccceEEEEEeccCCCCc--cCCceeeEeeeCccCCeEEEEEcCCCC-EE
Q 041206 36 EREEMFGFGLAAMAIRVC-NNWISDSCVYGDKCRFLHSWVHSVDGDNT--TNSLATLMKLNGHKKAVTNVGLPSGSN-KL 111 (371)
Q Consensus 36 ~~~~~h~~~v~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~l~~h~~~V~~~~~~~~~~-~l 111 (371)
.....|...|.+++++|. ..++. .++.++.|++|+........ ....+.+..+.+|...|++++|+|+++ +|
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~la----t~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 197 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIA----TKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYL 197 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEE----EECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEE----EECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeE
Confidence 456789999999999996 33322 35677889999954321111 112677889999999999999999988 99
Q ss_pred EEEeCCCcEEEEECCCCceEE-EEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC---EEEEEeCCCeE
Q 041206 112 YSGSRDGRVSVWDRDSGRCVN-VITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND---LLFAGSEGGVI 187 (371)
Q Consensus 112 ~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~---~l~~~~~dg~v 187 (371)
++|+.||.|++||+.++.... .+. ....+..|...|.+++|+|. .+++++.||.|
T Consensus 198 ~s~~~dg~i~vwd~~~~~~~~~~~~---------------------~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i 256 (430)
T 2xyi_A 198 LSASDDHTICLWDINATPKEHRVID---------------------AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256 (430)
T ss_dssp EEECTTSCEEEEETTSCCBGGGEEE---------------------CSEEECCCSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred EEEeCCCeEEEEeCCCCCCCCceec---------------------cceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeE
Confidence 999999999999998743210 000 01122236667999999983 89999999999
Q ss_pred EEEeccCCCCcceeeEEEecCc-ceEEEEecCCce--eEecccceeeeeCCCeEEEEECCC-ceEEEEeecCCCcEEEEE
Q 041206 188 SVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR--WNSKEEAAVFEFCGHTTRTWNLDN-LECVQTLKGHSDTVTSLL 263 (371)
Q Consensus 188 ~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~ 263 (371)
++||+++... .+....+..|. .|++++|+|++. +++| +.||.|++||+++ .+++..+..|...|.+++
T Consensus 257 ~i~d~~~~~~-~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg-------~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~ 328 (430)
T 2xyi_A 257 MIWDTRNNNT-SKPSHTVDAHTAEVNCLSFNPYSEFILATG-------SADKTVALWDLRNLKLKLHSFESHKDEIFQVQ 328 (430)
T ss_dssp EEEETTCSCS-SSCSEEEECCSSCEEEEEECSSCTTEEEEE-------ETTSEEEEEETTCTTSCSEEEECCSSCEEEEE
T ss_pred EEEECCCCCC-CcceeEeecCCCCeEEEEeCCCCCCEEEEE-------eCCCeEEEEeCCCCCCCeEEeecCCCCEEEEE
Confidence 9999997631 14566777888 999999999884 7788 9999999999998 567889999999999999
Q ss_pred Ec--C-CeEEEEeCCCcEEEEEccCCCC------------------cceecceEEEEecCCCC-EEEEecCCCeEEEEEc
Q 041206 264 FW--D-EYLFSSSLDETIKIWLYTHTKN------------------NAELSSLFGMLDAEAKP-VLFSSGKDSAIRLYEL 321 (371)
Q Consensus 264 ~~--~-~~l~s~~~dg~i~iwd~~~~~~------------------~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~ 321 (371)
|+ + .+|++++.|+.|++||+..... ..+...+..+.+.+.+. ++++++.||.|++|++
T Consensus 329 ~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 329 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp ECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred ECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence 99 3 4699999999999999877221 12223456666666666 8999999999999999
Q ss_pred CCcc
Q 041206 322 PSFK 325 (371)
Q Consensus 322 ~~~~ 325 (371)
....
T Consensus 409 ~~~~ 412 (430)
T 2xyi_A 409 AENV 412 (430)
T ss_dssp CHHH
T ss_pred cccc
Confidence 7643
No 121
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.3e-28 Score=218.95 Aligned_cols=252 Identities=10% Similarity=-0.005 Sum_probs=187.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eEEEEeCCCee-EEE----ee-cCCEEEEecC----------C-
Q 041206 97 KAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGR---CVNVITNGAEI-GCL----IS-EGSWVFLGLP----------N- 156 (371)
Q Consensus 97 ~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~~-~~~----~~-~~~~~~~~~~----------~- 156 (371)
.++.+++|+|+|++|+++ .++.|++||+.+++ .+..+..+... ... .. ....+..... .
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578999999999976666 47899999999999 66666643220 000 00 0000000000 0
Q ss_pred ----------cEEEEEeCCCCeeEEEEeCC--E-EEEEeCCCeEEEEecc--CCCCcceeeEEEe--cCc-ceEEEEecC
Q 041206 157 ----------AVKSWRVNAASVNALVVNND--L-LFAGSEGGVISVWKGT--FVANPFKQVASIR--APL-WFCSLSSSN 218 (371)
Q Consensus 157 ----------~i~~~~~~~~~v~~~~~~~~--~-l~~~~~dg~v~iwd~~--~~~~~~~~~~~~~--~~~-~v~~~~~~~ 218 (371)
...-...+.+.|.+++|+|+ + +++++.||.|++||+. ++ +.+..+. .+. .|.+++|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK----NVLKLRKRFCFSKRPNAISIAE 159 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS----SCEEEEEEEECSSCEEEEEECT
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC----ceeeeeecccCCCCceEEEEcC
Confidence 00001123447999999998 5 4889999999999998 66 5566665 445 899999999
Q ss_pred Cce-eEecccceeeeeCCCeEEEEECCCceEEE----EeecCCCcEEEEEEcCC-----eEEEEeCCCcEEEEEccCCCC
Q 041206 219 DTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQ----TLKGHSDTVTSLLFWDE-----YLFSSSLDETIKIWLYTHTKN 288 (371)
Q Consensus 219 ~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~-----~l~s~~~dg~i~iwd~~~~~~ 288 (371)
++. ++++ +.+|.+++|++.+++... .+.+|...|.+++|+++ +|++++.|+.|++||++....
T Consensus 160 ~~~~l~~~-------~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~ 232 (450)
T 2vdu_B 160 DDTTVIIA-------DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI 232 (450)
T ss_dssp TSSEEEEE-------ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC
T ss_pred CCCEEEEE-------eCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce
Confidence 986 8888 999999999998877554 78889999999999844 899999999999999876653
Q ss_pred c-----ceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecC--------------------------CceEE
Q 041206 289 N-----AELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFS--------------------------RREVE 337 (371)
Q Consensus 289 ~-----~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--------------------------~~~v~ 337 (371)
. .+...+..+.+. ++.+|++++.|+.|++||+.+++++..+.. ...|.
T Consensus 233 ~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 233 VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 2 233455666666 777999999999999999999987776642 24689
Q ss_pred EEEeCCCC-eEEeeC-CCCcEEEEEc
Q 041206 338 VDQIGPAG-LFFPGD-ASGSVGVWKW 361 (371)
Q Consensus 338 ~~~~s~~~-~l~~~~-~dg~i~iw~~ 361 (371)
+++|+|++ +|++++ .|+.|++|++
T Consensus 312 ~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 312 KIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 99999999 777777 8999999999
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.8e-28 Score=210.64 Aligned_cols=262 Identities=9% Similarity=-0.006 Sum_probs=191.6
Q ss_pred ccCCCCceeeccCcc-------cccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCC-CccCC
Q 041206 14 KHSEGGETMMSDDDD-------LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGD-NTTNS 85 (371)
Q Consensus 14 ~~sp~g~~l~~~~~d-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~ 85 (371)
.+.+++..+++++.| +..++.+..+. ...|.++.++|. ++.++.++.+++|+....-. .....
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-------~~s~s~D~~i~~w~~~~~~~~~~~~~ 113 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-------IISRGPCNRLLLLYPGNQITILDSKT 113 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-------EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-------eEEecCCCeEEEEEccCceEEeecCC
Confidence 356788999999887 44677776665 466777778775 55678999999997321100 01123
Q ss_pred ceeeEeee-CccCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEE
Q 041206 86 LATLMKLN-GHKKAVTNVGLPS--GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWR 162 (371)
Q Consensus 86 ~~~~~~l~-~h~~~V~~~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 162 (371)
.+.+..+. +|.+.|.+++|+| ++++|++++.||+|++||+++++........
T Consensus 114 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------------------------- 168 (343)
T 3lrv_A 114 NKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAK------------------------- 168 (343)
T ss_dssp CCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCC-------------------------
T ss_pred cceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecC-------------------------
Confidence 34344444 7889999999999 9999999999999999999999886654321
Q ss_pred eCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceee-EEEec-Cc-ceEEEEecCCce-eEecccceeeeeCCC
Q 041206 163 VNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQV-ASIRA-PL-WFCSLSSSNDTR-WNSKEEAAVFEFCGH 236 (371)
Q Consensus 163 ~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~-~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg 236 (371)
+...+.+++|+|+ ++++|+.||.|++||++++ +.. ..+.. |. +|.+++|+|++. ++++ + ++
T Consensus 169 -~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~----~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~-------~-~~ 235 (343)
T 3lrv_A 169 -SDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP----DQASSRFPVDEEAKIKEVKFADNGYWMVVE-------C-DQ 235 (343)
T ss_dssp -SSCCCCEEEECTTSCEEEEECTTSCEEEEESSCT----TSCCEECCCCTTSCEEEEEECTTSSEEEEE-------E-SS
T ss_pred -CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC----CCCccEEeccCCCCEEEEEEeCCCCEEEEE-------e-CC
Confidence 2235899999998 9999999999999999988 444 67777 88 999999999997 7777 7 56
Q ss_pred eEEEEECCCceEEEEeec---CCCcEE--EEEEc--CCeEEEEeC-CCcEEEEEccCCCCcceecceEEEEecC---CCC
Q 041206 237 TTRTWNLDNLECVQTLKG---HSDTVT--SLLFW--DEYLFSSSL-DETIKIWLYTHTKNNAELSSLFGMLDAE---AKP 305 (371)
Q Consensus 237 ~i~iwd~~~~~~~~~~~~---~~~~v~--~~~~~--~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~ 305 (371)
.|++||+++++.+..+.. |...+. +++|+ +++|++++. |+.+++|++......-....+..+.+.+ ...
T Consensus 236 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (343)
T 3lrv_A 236 TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTADFT 315 (343)
T ss_dssp BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEEEEEEECCC----CCCC
T ss_pred eEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEecCceeEecCccccccc
Confidence 999999999877655543 444444 58998 689999988 9999999987665433322333334444 555
Q ss_pred EEEEecCCCeEEEEEcC
Q 041206 306 VLFSSGKDSAIRLYELP 322 (371)
Q Consensus 306 ~l~~~~~d~~i~iwd~~ 322 (371)
.+++++.|+.+.++-..
T Consensus 316 ~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 316 DMDVVCGDGGIAAILKT 332 (343)
T ss_dssp EEEEEEETTEEEEEEEC
T ss_pred eeEEEecCCceEEEEec
Confidence 88889999998887543
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=4e-25 Score=197.38 Aligned_cols=285 Identities=10% Similarity=0.066 Sum_probs=213.3
Q ss_pred cccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCC
Q 041206 29 LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGS 108 (371)
Q Consensus 29 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~ 108 (371)
...++++..+..|. .+.+++++|...++. +.+..++.|++|+ ..+++.+..+..|. .+.+++|+|++
T Consensus 19 ~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~---~~~~~d~~i~v~d--------~~~~~~~~~~~~~~-~v~~~~~spdg 85 (391)
T 1l0q_A 19 VTSNKVTATIPVGS-NPMGAVISPDGTKVY---VANAHSNDVSIID--------TATNNVIATVPAGS-SPQGVAVSPDG 85 (391)
T ss_dssp TTTTEEEEEEECSS-SEEEEEECTTSSEEE---EEEGGGTEEEEEE--------TTTTEEEEEEECSS-SEEEEEECTTS
T ss_pred CCCCeEEEEeecCC-CcceEEECCCCCEEE---EECCCCCeEEEEE--------CCCCeEEEEEECCC-CccceEECCCC
Confidence 55678888887665 488999999776432 2245678999999 45677888888666 89999999999
Q ss_pred CEEEE-EeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EE-EEEeCC
Q 041206 109 NKLYS-GSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LL-FAGSEG 184 (371)
Q Consensus 109 ~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l-~~~~~d 184 (371)
++|+. ++.++.|++||+.+++.+..+..+. .+.+++|+|+ .+ ++++.+
T Consensus 86 ~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~----------------------------~~~~~~~s~dg~~l~~~~~~~ 137 (391)
T 1l0q_A 86 KQVYVTNMASSTLSVIDTTSNTVAGTVKTGK----------------------------SPLGLALSPDGKKLYVTNNGD 137 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEECSS----------------------------SEEEEEECTTSSEEEEEETTT
T ss_pred CEEEEEECCCCEEEEEECCCCeEEEEEeCCC----------------------------CcceEEECCCCCEEEEEeCCC
Confidence 98765 5567999999999998887776433 4788999988 45 678889
Q ss_pred CeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-e-EecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEE
Q 041206 185 GVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-W-NSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSL 262 (371)
Q Consensus 185 g~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l-~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 262 (371)
+.|++||+.++ +....+..+..+.+++|+|+++ + +++ +.++.|++||+++++.+..+. +...+.++
T Consensus 138 ~~v~~~d~~~~----~~~~~~~~~~~~~~~~~~~dg~~l~~~~-------~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~ 205 (391)
T 1l0q_A 138 KTVSVINTVTK----AVINTVSVGRSPKGIAVTPDGTKVYVAN-------FDSMSISVIDTVTNSVIDTVK-VEAAPSGI 205 (391)
T ss_dssp TEEEEEETTTT----EEEEEEECCSSEEEEEECTTSSEEEEEE-------TTTTEEEEEETTTTEEEEEEE-CSSEEEEE
T ss_pred CEEEEEECCCC----cEEEEEecCCCcceEEECCCCCEEEEEe-------CCCCEEEEEECCCCeEEEEEe-cCCCccce
Confidence 99999999988 7777777777779999999985 4 577 789999999999999888776 55688999
Q ss_pred EEc--CCeEEEEe---CCCcEEEEEccCCCCccee---cceEEEEecCCCCEE-EEecCCCeEEEEEcCCcceeeeecC-
Q 041206 263 LFW--DEYLFSSS---LDETIKIWLYTHTKNNAEL---SSLFGMLDAEAKPVL-FSSGKDSAIRLYELPSFKLRARIFS- 332 (371)
Q Consensus 263 ~~~--~~~l~s~~---~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~- 332 (371)
+|+ ++++++++ .++.|++||+...+....+ ..+..+.+.++++++ ++++.|+.|++||+.+++.+..+..
T Consensus 206 ~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~ 285 (391)
T 1l0q_A 206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVG 285 (391)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred EECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECC
Confidence 998 56788777 6899999998765532111 123334444444455 6778999999999999888776652
Q ss_pred CceEE---EEEeCCC----------------------C-eEEeeCCCCcEEEEEccccce
Q 041206 333 RREVE---VDQIGPA----------------------G-LFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 333 ~~~v~---~~~~s~~----------------------~-~l~~~~~dg~i~iw~~~~~~~ 366 (371)
..+.. .+.+.|+ . .+...+.|..+++|++..+..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 286 KNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp SSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred cCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 22211 1222221 1 356667788999999977654
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=1.3e-25 Score=190.57 Aligned_cols=205 Identities=13% Similarity=0.047 Sum_probs=141.0
Q ss_pred ccCCeEEEEEcCC----CCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEe-------
Q 041206 95 HKKAVTNVGLPSG----SNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRV------- 163 (371)
Q Consensus 95 h~~~V~~~~~~~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------- 163 (371)
|...|++++|+|+ ++++++++.+ +++|++.+++.+.+... +.++.|++|++
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~----------------g~d~~V~~~~~s~dG~~~ 171 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGT----------------LSDQQVEVMTFAEDGGGK 171 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESS----------------STTCEEEEEEECTTSCEE
T ss_pred cccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEeccc----------------CCCCcEEEEEECCCCcee
Confidence 4456777777777 6777776643 66676665555444210 11333333333
Q ss_pred -----CCCCeeEEEEeC-----CEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc----ceEEEEecCCce-eEeccc-
Q 041206 164 -----NAASVNALVVNN-----DLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL----WFCSLSSSNDTR-WNSKEE- 227 (371)
Q Consensus 164 -----~~~~v~~~~~~~-----~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~-l~~~~~- 227 (371)
+...+..++|++ +.|++++.|++|+|||+.++ +++.++.+|. .+.+++|+|+++ ++++.+
T Consensus 172 ~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG----k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~ 247 (356)
T 2w18_A 172 ENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG----QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHP 247 (356)
T ss_dssp EEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC----CEEEEEECCC---CCCEEEEEEETTEEEEEEC--
T ss_pred eeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC----cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccC
Confidence 444566777776 39999999999999999999 8888888643 677889999997 433321
Q ss_pred ----ceeeeeCCCeEEEEECCCceEEEEe-----ecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCCccee----c-
Q 041206 228 ----AAVFEFCGHTTRTWNLDNLECVQTL-----KGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKNNAEL----S- 293 (371)
Q Consensus 228 ----~~~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~- 293 (371)
.++.++.|++|++||..+++.+..+ .+|...+.+..+++.++++++.|++|+|||+...+....+ .
T Consensus 248 ~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~ 327 (356)
T 2w18_A 248 CAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQ 327 (356)
T ss_dssp ----------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--C
T ss_pred CCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCC
Confidence 2345599999999999999988765 3777777777777889999999999999999887643222 1
Q ss_pred ceEEEEecCCCCEEEEecCCCeEEEEEc
Q 041206 294 SLFGMLDAEAKPVLFSSGKDSAIRLYEL 321 (371)
Q Consensus 294 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 321 (371)
.+..+.+++++++|++|+.|++|+|||+
T Consensus 328 vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 328 HWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 2233455566669999999999999996
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=3.8e-25 Score=200.22 Aligned_cols=247 Identities=13% Similarity=0.106 Sum_probs=193.2
Q ss_pred ceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCC
Q 041206 86 LATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNA 165 (371)
Q Consensus 86 ~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 165 (371)
.+.+..+..+. .+.+++|+|++.++++++.|+.|++||+.+++....+.... +..+.
T Consensus 113 ~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~----------------------~~~~~ 169 (433)
T 3bws_A 113 HRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEK----------------------YKKKL 169 (433)
T ss_dssp EEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHH----------------------HHTTC
T ss_pred ceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCccc----------------------ccccC
Confidence 36677777664 45699999988888888899999999999998876443210 00134
Q ss_pred CCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-e-EecccceeeeeCCCeEEE
Q 041206 166 ASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-W-NSKEEAAVFEFCGHTTRT 240 (371)
Q Consensus 166 ~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l-~~~~~~~~~~~~dg~i~i 240 (371)
+.|.+++++++ ++++++.|+.|++||+.++ +....+..+. .+.+++|+|++. + +++ +.++.|++
T Consensus 170 ~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~i~~ 238 (433)
T 3bws_A 170 GFVETISIPEHNELWVSQMQANAVHVFDLKTL----AYKATVDLTGKWSKILLYDPIRDLVYCSN-------WISEDISV 238 (433)
T ss_dssp CEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC----CEEEEEECSSSSEEEEEEETTTTEEEEEE-------TTTTEEEE
T ss_pred CceeEEEEcCCCEEEEEECCCCEEEEEECCCc----eEEEEEcCCCCCeeEEEEcCCCCEEEEEe-------cCCCcEEE
Confidence 45889999776 8889999999999999987 7778888888 999999999985 5 455 58999999
Q ss_pred EECCCceEEEEeecCCCcEEEEEEc--CCeEEEEe--------CCCcEEEEEccCCCCccee---cceEEEEecCCC-CE
Q 041206 241 WNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSS--------LDETIKIWLYTHTKNNAEL---SSLFGMLDAEAK-PV 306 (371)
Q Consensus 241 wd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~--------~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~-~~ 306 (371)
||+++++.+..+..+ ..+.+++|+ ++++++++ .|+.|++||+...+..... .....+.+.+++ .+
T Consensus 239 ~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l 317 (433)
T 3bws_A 239 IDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKI 317 (433)
T ss_dssp EETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEE
T ss_pred EECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEE
Confidence 999999998888754 458999998 56888887 4889999998866532211 233334444444 46
Q ss_pred EEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCC---------------CCcEEEEEcccccee
Q 041206 307 LFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDA---------------SGSVGVWKWLLAEQQ 367 (371)
Q Consensus 307 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~---------------dg~i~iw~~~~~~~~ 367 (371)
+++++.++.|++||+.+++.+..+.+...+.+++|+|++ .+++++. ||.|++||+.+++..
T Consensus 318 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~ 394 (433)
T 3bws_A 318 YVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK 394 (433)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE
T ss_pred EEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE
Confidence 677799999999999999988888888889999999999 6776665 579999999876544
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=3.4e-26 Score=204.52 Aligned_cols=225 Identities=11% Similarity=0.037 Sum_probs=149.9
Q ss_pred eeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcC--------CCCEEEEEeCCCcEEEEECCCCceEE
Q 041206 61 CVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPS--------GSNKLYSGSRDGRVSVWDRDSGRCVN 132 (371)
Q Consensus 61 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~--------~~~~l~s~~~dg~v~iwd~~~~~~~~ 132 (371)
...++.|+.+++|+.... .......+..+.||++.|++++|+| |+++||||+.|++|+|||+.++.++.
T Consensus 104 las~~~d~~v~lw~~~~~---~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~ 180 (393)
T 4gq1_A 104 LACVCQDNTVRLIITKNE---TIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL 180 (393)
T ss_dssp EEEEETTSCEEEEEEETT---EEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE
T ss_pred EEEEeCCCcEEEEECCCC---ccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee
Confidence 345678899999993211 0111234566899999999999997 78999999999999999998877655
Q ss_pred EEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCccee--------
Q 041206 133 VITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQ-------- 201 (371)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~-------- 201 (371)
.+.. +...|.+++|+|+ +|++++.|+.|++||++++......
T Consensus 181 ~~~~---------------------------~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~ 233 (393)
T 4gq1_A 181 AGYP---------------------------LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKN 233 (393)
T ss_dssp EEEE---------------------------CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSC
T ss_pred eecC---------------------------CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCccc
Confidence 4432 3446899999987 7999999999999999876421111
Q ss_pred -------------eEEEecCc-ceEEEEec-CCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc
Q 041206 202 -------------VASIRAPL-WFCSLSSS-NDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW 265 (371)
Q Consensus 202 -------------~~~~~~~~-~v~~~~~~-~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 265 (371)
.....+|. .+.++.|+ ++++ ++++ +.|+.+++||+..++....+..|...+..+.+.
T Consensus 234 ~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~-------s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~ 306 (393)
T 4gq1_A 234 PWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAM-------CKSGAWLRWNLFANNDYNEISDSTMKLGPKNLL 306 (393)
T ss_dssp CCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEE-------CTTSEEEEEEC-------------------CCS
T ss_pred ceEEecccccceeeeecccccccceeeeeecCCCCEEEEE-------eCCCCEEEEECccCCCCceEeeecCccccEEEc
Confidence 11123455 78888887 6775 8888 999999999999887776666665544443332
Q ss_pred ---------------------C-CeEEEEeCCCcEEEEEccCCCCcce----ecceEEEEecCCCCEEEEecCCCeEEEE
Q 041206 266 ---------------------D-EYLFSSSLDETIKIWLYTHTKNNAE----LSSLFGMLDAEAKPVLFSSGKDSAIRLY 319 (371)
Q Consensus 266 ---------------------~-~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~~i~iw 319 (371)
+ .++++++.||+|++||+...+.... -..+..+.+++++++|++++.+| +.+|
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lv 385 (393)
T 4gq1_A 307 PNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLT 385 (393)
T ss_dssp CSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEE
T ss_pred cccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEE
Confidence 1 2567888999999999887664322 23566777777888999998765 6666
Q ss_pred EcCC
Q 041206 320 ELPS 323 (371)
Q Consensus 320 d~~~ 323 (371)
.+..
T Consensus 386 rL~g 389 (393)
T 4gq1_A 386 RLMG 389 (393)
T ss_dssp EEGG
T ss_pred EEeC
Confidence 6543
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=8.1e-24 Score=196.09 Aligned_cols=287 Identities=13% Similarity=0.101 Sum_probs=211.7
Q ss_pred CCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCceEEEEeCCCeeE
Q 041206 64 GDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDR--DSGRCVNVITNGAEIG 141 (371)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~--~~~~~~~~~~~~~~~~ 141 (371)
...++.+.+|+ ...++++.++..+.. +..++|+|++++|++++.|++|++||+ .+++++.++..+....
T Consensus 155 ~~~d~~V~v~D--------~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~ 225 (543)
T 1nir_A 155 LRDAGQIALVD--------GDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR 225 (543)
T ss_dssp EGGGTEEEEEE--------TTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE
T ss_pred EcCCCeEEEEE--------CCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcc
Confidence 46678899999 456788899984333 899999999999999999999999999 8999999988776665
Q ss_pred EEe--e----cCCEEEEec--CCcEEEEEeCCC----------------------CeeEEEEeCC---EEEEEeCCCeEE
Q 041206 142 CLI--S----EGSWVFLGL--PNAVKSWRVNAA----------------------SVNALVVNND---LLFAGSEGGVIS 188 (371)
Q Consensus 142 ~~~--~----~~~~~~~~~--~~~i~~~~~~~~----------------------~v~~~~~~~~---~l~~~~~dg~v~ 188 (371)
.+. + +++++++++ +++|.+||..+. .+.++.++++ ++++...++.|.
T Consensus 226 ~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~ 305 (543)
T 1nir_A 226 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL 305 (543)
T ss_dssp EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred eEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEE
Confidence 554 4 678888764 799999997654 3567778775 677778899999
Q ss_pred EEeccCCCCcceeeEEEecCcceEEEEecCCce-eE-ecccceeeeeCCCeEEEEECCCceEEEEeec----CCCcEEEE
Q 041206 189 VWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WN-SKEEAAVFEFCGHTTRTWNLDNLECVQTLKG----HSDTVTSL 262 (371)
Q Consensus 189 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~ 262 (371)
+||+.+.... .+..+.....+.++.|+|+++ ++ ++ ..+++|.+||+.+++++..+.. |.+....+
T Consensus 306 vvd~~~~~~l--~~~~i~~~~~~~~~~~spdg~~l~va~-------~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~ 376 (543)
T 1nir_A 306 LVNYKDIDNL--TVTSIGAAPFLHDGGWDSSHRYFMTAA-------NNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF 376 (543)
T ss_dssp EEECTTSSSC--EEEEEECCSSCCCEEECTTSCEEEEEE-------GGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE
T ss_pred EEEecCCCcc--eeEEeccCcCccCceECCCCCEEEEEe-------cCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc
Confidence 9999876321 122333222788999999997 44 44 5689999999999999988874 55433333
Q ss_pred EEc--CCeEEEEe-CCCcEEEEEccCCCC-------ccee----cceEEEEecCCCCEEEEec-------CCCeEEEEEc
Q 041206 263 LFW--DEYLFSSS-LDETIKIWLYTHTKN-------NAEL----SSLFGMLDAEAKPVLFSSG-------KDSAIRLYEL 321 (371)
Q Consensus 263 ~~~--~~~l~s~~-~dg~i~iwd~~~~~~-------~~~~----~~~~~~~~~~~~~~l~~~~-------~d~~i~iwd~ 321 (371)
... +..++++. .|++|.+||+....+ ...+ .....+..++++++|++++ .+++|.+||+
T Consensus 377 ~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~ 456 (543)
T 1nir_A 377 VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL 456 (543)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEEC
Confidence 222 34566665 589999999887322 1111 1222344566666888886 2679999999
Q ss_pred CCcceeeee----------cCCceEEEEEeCCCC-eEEee-----CCCCcEEEEEccccceec
Q 041206 322 PSFKLRARI----------FSRREVEVDQIGPAG-LFFPG-----DASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 322 ~~~~~~~~~----------~~~~~v~~~~~s~~~-~l~~~-----~~dg~i~iw~~~~~~~~~ 368 (371)
.+++...+. .+...+..+.|+|+| .++.+ +.|+.|.|||..+.++.+
T Consensus 457 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~ 519 (543)
T 1nir_A 457 KNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKA 519 (543)
T ss_dssp TCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred CCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEE
Confidence 998876333 236789999999999 44433 358999999999987665
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=3.5e-22 Score=179.61 Aligned_cols=263 Identities=10% Similarity=-0.077 Sum_probs=190.0
Q ss_pred ccceeE--EEEEeeccceeeeeeeec---------------ceeeccceeeCCcc---ceEEEEEeccCCCCccCCceee
Q 041206 30 MKGRAE--EREEMFGFGLAAMAIRVC---------------NNWISDSCVYGDKC---RFLHSWVHSVDGDNTTNSLATL 89 (371)
Q Consensus 30 ~~~~~~--~~~~~h~~~v~~~~~~~~---------------~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~ 89 (371)
.+++.+ ..+.+|...+..+++++. ..++. ... ...+ +.|++|+ . .....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~-~s~-~~~~~~~~~i~i~d-------~--~g~~~ 171 (415)
T 2hqs_A 103 APGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAY-VVQ-TNGGQFPYELRVSD-------Y--DGYNQ 171 (415)
T ss_dssp STTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEE-EEE-CSSSSCCEEEEEEE-------T--TSCSC
T ss_pred CCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEE-EEe-cCCCCccceEEEEc-------C--CCCCC
Confidence 666766 458899988888876652 11111 111 1122 7899999 2 23556
Q ss_pred EeeeCccCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCC
Q 041206 90 MKLNGHKKAVTNVGLPSGSNKLYSGSRDG---RVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAA 166 (371)
Q Consensus 90 ~~l~~h~~~V~~~~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 166 (371)
+.+.+|...|.+++|+|++++|++++.++ .|++||+.+++...... +..
T Consensus 172 ~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~----------------------------~~~ 223 (415)
T 2hqs_A 172 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS----------------------------FPR 223 (415)
T ss_dssp EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC----------------------------CSS
T ss_pred EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeec----------------------------CCC
Confidence 78889999999999999999999999885 99999999988764333 223
Q ss_pred CeeEEEEeCC--EEE-EEeCCC--eEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeC-CC--
Q 041206 167 SVNALVVNND--LLF-AGSEGG--VISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFC-GH-- 236 (371)
Q Consensus 167 ~v~~~~~~~~--~l~-~~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~-dg-- 236 (371)
.+.+++|+|+ .|+ +++.++ .|++||+.++ +. ..+..+. .+.+++|+||++ ++.+ +. ++
T Consensus 224 ~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~----~~-~~l~~~~~~~~~~~~spdg~~l~~~-------s~~~g~~ 291 (415)
T 2hqs_A 224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG----QI-RQVTDGRSNNTEPTWFPDSQNLAFT-------SDQAGRP 291 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC----CE-EECCCCSSCEEEEEECTTSSEEEEE-------ECTTSSC
T ss_pred cccCEEEcCCCCEEEEEEecCCCceEEEEECCCC----CE-EeCcCCCCcccceEECCCCCEEEEE-------ECCCCCc
Confidence 5889999998 555 666655 4999999886 33 5666677 899999999997 6666 54 44
Q ss_pred eEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCC---CcEEEEEccCCCCccee--cceEEEEecCCCCEEEE
Q 041206 237 TTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLD---ETIKIWLYTHTKNNAEL--SSLFGMLDAEAKPVLFS 309 (371)
Q Consensus 237 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~l~~ 309 (371)
.|++||+.+++. ..+..+...+.+++|+ +++|++++.+ ..|++||+...+..... ..+....+.+++++|++
T Consensus 292 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~ 370 (415)
T 2hqs_A 292 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIY 370 (415)
T ss_dssp EEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEE
T ss_pred EEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCCCcCCeEEcCCCCEEEE
Confidence 788889988764 4455677789999998 6788887764 58999998765431110 13445556666668888
Q ss_pred ecCCC---eEEEEEcCCcceeeeec-CCceEEEEEeCCCC
Q 041206 310 SGKDS---AIRLYELPSFKLRARIF-SRREVEVDQIGPAG 345 (371)
Q Consensus 310 ~~~d~---~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~ 345 (371)
++.++ .|++||+..... ..+. +.+.|.+++|+|.-
T Consensus 371 ~s~~~~~~~l~~~d~~g~~~-~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 371 SSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp EEEETTEEEEEEEETTSCCE-EECCCSSSEEEEEEECCCC
T ss_pred EEcCCCccEEEEEECCCCcE-EEeeCCCCCCcCCcccccc
Confidence 77766 799999985544 4444 67899999999964
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=7.2e-21 Score=176.34 Aligned_cols=298 Identities=7% Similarity=0.026 Sum_probs=217.7
Q ss_pred CCcccCCCCceeeccCcc-------cccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCcc
Q 041206 11 DEHKHSEGGETMMSDDDD-------LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTT 83 (371)
Q Consensus 11 ~~~~~sp~g~~l~~~~~d-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (371)
..+.|+|++..+++...+ ...++++..+..+.. +..++++|.+.++... +.++.|.+|+.. .
T Consensus 141 ~~~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~----~~d~~V~v~D~~------~ 209 (543)
T 1nir_A 141 QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVI----GRDARIDMIDLW------A 209 (543)
T ss_dssp CCSCCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEE----ETTSEEEEEETT------S
T ss_pred cccccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEE----CCCCeEEEEECc------C
Confidence 346799999988887665 456888888874333 7788899987654322 234889999920 1
Q ss_pred CCceeeEeeeCccCCeEEEEEcC----CCCEEEEEeC-CCcEEEEECCCCceEEEEeCCC------------eeEEEee-
Q 041206 84 NSLATLMKLNGHKKAVTNVGLPS----GSNKLYSGSR-DGRVSVWDRDSGRCVNVITNGA------------EIGCLIS- 145 (371)
Q Consensus 84 ~~~~~~~~l~~h~~~V~~~~~~~----~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~------------~~~~~~~- 145 (371)
.+++.+.++.. ...+..++|+| ++++|++++. +++|.+||..+++++.++.... .+..+.+
T Consensus 210 ~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s 288 (543)
T 1nir_A 210 KEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS 288 (543)
T ss_dssp SSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred CCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEEC
Confidence 45778888884 45689999999 9999999984 8999999999999998886521 3444443
Q ss_pred -cCCEEEE--ecCCcEEEEEeCCC------------CeeEEEEeCC--EEEEE-eCCCeEEEEeccCCCCcceeeEEEec
Q 041206 146 -EGSWVFL--GLPNAVKSWRVNAA------------SVNALVVNND--LLFAG-SEGGVISVWKGTFVANPFKQVASIRA 207 (371)
Q Consensus 146 -~~~~~~~--~~~~~i~~~~~~~~------------~v~~~~~~~~--~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~ 207 (371)
++..+++ ..++.|.+||..+. .+.++.|+|+ +++++ ..++.|.+||..++ +++..+..
T Consensus 289 ~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg----~l~~~i~~ 364 (543)
T 1nir_A 289 HEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR----RLSALVDV 364 (543)
T ss_dssp SSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT----EEEEEEEC
T ss_pred CCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC----eEEEeecc
Confidence 3555444 35789999998653 3556888988 55554 45899999999998 77777774
Q ss_pred ----Cc-ceEEEEecCC-ce-eEecccceeeee-CCCeEEEEECCC-------ceEEEEeecCCCcEEEEEEc--CCeEE
Q 041206 208 ----PL-WFCSLSSSND-TR-WNSKEEAAVFEF-CGHTTRTWNLDN-------LECVQTLKGHSDTVTSLLFW--DEYLF 270 (371)
Q Consensus 208 ----~~-~v~~~~~~~~-~~-l~~~~~~~~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~--~~~l~ 270 (371)
|. ....+ ++|+ +. ++++ . .|++|.+||+.+ +++++++..|...+..+.++ +++|+
T Consensus 365 g~~ph~g~g~~~-~~p~~g~~~~s~-------~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~ 436 (543)
T 1nir_A 365 GKTPHPGRGANF-VHPKYGPVWSTS-------HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLY 436 (543)
T ss_dssp SSSBCCTTCEEE-EETTTEEEEEEE-------BSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEE
T ss_pred CCCCCCCCCccc-CCCCCccEEEec-------cCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEE
Confidence 33 23333 4676 55 4554 4 579999999998 89999999999888999999 67888
Q ss_pred EEe-------CCCcEEEEEccCCCCc-ce------------ecceEEEEecCCCCEEEEe-----cCCCeEEEEEcCCcc
Q 041206 271 SSS-------LDETIKIWLYTHTKNN-AE------------LSSLFGMLDAEAKPVLFSS-----GKDSAIRLYELPSFK 325 (371)
Q Consensus 271 s~~-------~dg~i~iwd~~~~~~~-~~------------~~~~~~~~~~~~~~~l~~~-----~~d~~i~iwd~~~~~ 325 (371)
+++ .+++|.+||+.+.+.. .. ...+....+.++++.++++ +.++.|.|||..+++
T Consensus 437 v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~ 516 (543)
T 1nir_A 437 VDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK 516 (543)
T ss_dssp ECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred EecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCce
Confidence 887 2779999998876643 21 1234444555555566654 247999999999999
Q ss_pred eeeeecC
Q 041206 326 LRARIFS 332 (371)
Q Consensus 326 ~~~~~~~ 332 (371)
++..+..
T Consensus 517 ~~~~i~~ 523 (543)
T 1nir_A 517 LKAVVKD 523 (543)
T ss_dssp EEEEECC
T ss_pred EEEeecC
Confidence 9888764
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=4.6e-22 Score=178.84 Aligned_cols=251 Identities=10% Similarity=-0.059 Sum_probs=181.8
Q ss_pred ceEEEEEeccCCCCc-cCCceee--EeeeCccCCeEEEEEcC--------------CCCEEEEEeCC------CcEEEEE
Q 041206 68 RFLHSWVHSVDGDNT-TNSLATL--MKLNGHKKAVTNVGLPS--------------GSNKLYSGSRD------GRVSVWD 124 (371)
Q Consensus 68 ~~i~~~~~~~~~~~~-~~~~~~~--~~l~~h~~~V~~~~~~~--------------~~~~l~s~~~d------g~v~iwd 124 (371)
..+++|+ . ..+++.+ ..+.+|...+..+++++ .+..++.++.+ +.|++||
T Consensus 93 ~~i~lwd-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d 165 (415)
T 2hqs_A 93 VAYQLVD-------TGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSD 165 (415)
T ss_dssp EEEEEEE-------CSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEE
T ss_pred EEEEEEe-------CCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEc
Confidence 3899999 3 0344555 56899999998888775 15566666654 7999999
Q ss_pred CCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCC---eEEEEeccCCCCcc
Q 041206 125 RDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGG---VISVWKGTFVANPF 199 (371)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg---~v~iwd~~~~~~~~ 199 (371)
++.+.. ..+.. +...+.+++|+|+ .|++++.++ .|++||+.++
T Consensus 166 ~~g~~~-~~l~~---------------------------~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg---- 213 (415)
T 2hqs_A 166 YDGYNQ-FVVHR---------------------------SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG---- 213 (415)
T ss_dssp TTSCSC-EEEEE---------------------------ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC----
T ss_pred CCCCCC-EEEeC---------------------------CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC----
Confidence 975443 33321 3345899999998 888888875 9999999987
Q ss_pred eeeEEEecCc-ceEEEEecCCce-eE-ecccceeeeeCCC--eEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEE
Q 041206 200 KQVASIRAPL-WFCSLSSSNDTR-WN-SKEEAAVFEFCGH--TTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSS 272 (371)
Q Consensus 200 ~~~~~~~~~~-~v~~~~~~~~~~-l~-~~~~~~~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~ 272 (371)
+.. .+..+. .+.+++|+|||+ |+ ++ +.++ .|++||+++++. ..+..|...+.+++|+ +++|+++
T Consensus 214 ~~~-~l~~~~~~~~~~~~spdg~~la~~~-------~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~ 284 (415)
T 2hqs_A 214 AVR-QVASFPRHNGAPAFSPDGSKLAFAL-------SKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFT 284 (415)
T ss_dssp CEE-EEECCSSCEEEEEECTTSSEEEEEE-------CTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEE
T ss_pred cEE-EeecCCCcccCEEEcCCCCEEEEEE-------ecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEE
Confidence 443 566666 899999999996 55 55 5554 499999998876 5677788899999998 5678877
Q ss_pred eC-CC--cEEEEEccCCCCcc---eecceEEEEecCCCCEEEEecCC---CeEEEEEcCCcceeeeecCCceEEEEEeCC
Q 041206 273 SL-DE--TIKIWLYTHTKNNA---ELSSLFGMLDAEAKPVLFSSGKD---SAIRLYELPSFKLRARIFSRREVEVDQIGP 343 (371)
Q Consensus 273 ~~-dg--~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~ 343 (371)
+. ++ .|.+||+...+... ....+....+.+++++|++++.+ ..|++||+.+++.. .+.....+.+++|+|
T Consensus 285 s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~sp 363 (415)
T 2hqs_A 285 SDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPSLAP 363 (415)
T ss_dssp ECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEEECT
T ss_pred ECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCCCcCCeEEcC
Confidence 75 45 57777876654311 11233344555566677777654 58999999988764 344334899999999
Q ss_pred CC-eEEeeCCCC---cEEEEEcccccee
Q 041206 344 AG-LFFPGDASG---SVGVWKWLLAEQQ 367 (371)
Q Consensus 344 ~~-~l~~~~~dg---~i~iw~~~~~~~~ 367 (371)
+| .|++++.++ .|++||+..+...
T Consensus 364 dg~~l~~~s~~~~~~~l~~~d~~g~~~~ 391 (415)
T 2hqs_A 364 NGTMVIYSSSQGMGSVLNLVSTDGRFKA 391 (415)
T ss_dssp TSSEEEEEEEETTEEEEEEEETTSCCEE
T ss_pred CCCEEEEEEcCCCccEEEEEECCCCcEE
Confidence 99 788887776 7999998765443
No 131
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=1.4e-20 Score=164.50 Aligned_cols=256 Identities=14% Similarity=0.172 Sum_probs=172.8
Q ss_pred CccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCC-CcEEEEECC--CCceE--EEEeCCCe
Q 041206 65 DKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRD-GRVSVWDRD--SGRCV--NVITNGAE 139 (371)
Q Consensus 65 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~d-g~v~iwd~~--~~~~~--~~~~~~~~ 139 (371)
..++.+++|+... ....+.+..+ .|...+.+++|+|++++|++++.+ +.|++|++. +++.. ..+...
T Consensus 12 ~~~~~v~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-- 83 (343)
T 1ri6_A 12 PESQQIHVWNLNH-----EGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-- 83 (343)
T ss_dssp GGGTEEEEEEECT-----TSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS--
T ss_pred CCCCeEEEEEECC-----CCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC--
Confidence 5678899998321 0122334444 477889999999999999998876 999999997 55432 233221
Q ss_pred eEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEe-CCCeEEEEeccCCCCcceeeEEEecCcceEEEEe
Q 041206 140 IGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGS-EGGVISVWKGTFVANPFKQVASIRAPLWFCSLSS 216 (371)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 216 (371)
..+..++|+|+ ++++++ .++.|.+||+..+ ...+....+..+..+.+++|
T Consensus 84 --------------------------~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~ 136 (343)
T 1ri6_A 84 --------------------------GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG-LPVGVVDVVEGLDGCHSANI 136 (343)
T ss_dssp --------------------------SCCSEEEECTTSSEEEEEETTTTEEEEEEEETT-EEEEEEEEECCCTTBCCCEE
T ss_pred --------------------------CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCC-ccccccccccCCCCceEEEE
Confidence 14788999988 565555 4889999999522 11144555555458889999
Q ss_pred cCCce-eEecccceeeee-CCCeEEEEECCC-ceEEE----Eeec-CCCcEEEEEEc--CCeEE-EEeCCCcEEEEEccC
Q 041206 217 SNDTR-WNSKEEAAVFEF-CGHTTRTWNLDN-LECVQ----TLKG-HSDTVTSLLFW--DEYLF-SSSLDETIKIWLYTH 285 (371)
Q Consensus 217 ~~~~~-l~~~~~~~~~~~-~dg~i~iwd~~~-~~~~~----~~~~-~~~~v~~~~~~--~~~l~-s~~~dg~i~iwd~~~ 285 (371)
+|+++ ++++ + .++.|++||+.+ ++... .+.. ....+..++|+ +++++ ++..++.|.+|++..
T Consensus 137 s~dg~~l~~~-------~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~ 209 (343)
T 1ri6_A 137 SPDNRTLWVP-------ALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD 209 (343)
T ss_dssp CTTSSEEEEE-------EGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred CCCCCEEEEe-------cCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 99996 6655 5 899999999987 65432 2333 33478889998 55565 445889999999854
Q ss_pred CC--C--cce----------ecceEEEEecCCCCEEE-EecCCCeEEEEEcC----CcceeeeecCCceEEEEEeCCCC-
Q 041206 286 TK--N--NAE----------LSSLFGMLDAEAKPVLF-SSGKDSAIRLYELP----SFKLRARIFSRREVEVDQIGPAG- 345 (371)
Q Consensus 286 ~~--~--~~~----------~~~~~~~~~~~~~~~l~-~~~~d~~i~iwd~~----~~~~~~~~~~~~~v~~~~~s~~~- 345 (371)
.. . ... ......+.+.+++++|+ +...++.|++||+. ..+.+..+.....+..++|+|++
T Consensus 210 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 289 (343)
T 1ri6_A 210 PHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGK 289 (343)
T ss_dssp TTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSS
T ss_pred CCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCC
Confidence 21 1 000 01122344444444555 66689999999998 33444444444458899999999
Q ss_pred eEEeeC-CCCcEEEEEcc
Q 041206 346 LFFPGD-ASGSVGVWKWL 362 (371)
Q Consensus 346 ~l~~~~-~dg~i~iw~~~ 362 (371)
+|++++ .++.|.+|++.
T Consensus 290 ~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 290 YLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEEECTTTCEEEEEEEE
T ss_pred EEEEecCCCCeEEEEEEc
Confidence 666665 68999999665
No 132
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=2.1e-21 Score=194.14 Aligned_cols=332 Identities=10% Similarity=-0.002 Sum_probs=230.2
Q ss_pred cccCCCCceeeccCcc-------------cccceeEEEEEeeccce-------eeeeeeecceeeccceeeCC--ccceE
Q 041206 13 HKHSEGGETMMSDDDD-------------LMKGRAEEREEMFGFGL-------AAMAIRVCNNWISDSCVYGD--KCRFL 70 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d-------------~~~~~~~~~~~~h~~~v-------~~~~~~~~~~~~~~~~~~~~--~~~~i 70 (371)
..|||||++||....+ ...++ ...+..|...+ ..++|+|.+.++........ ....+
T Consensus 58 ~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l 136 (1045)
T 1k32_A 58 ARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCL 136 (1045)
T ss_dssp EEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEE
T ss_pred eEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceE
Confidence 5699999999976432 12233 56677888887 88899988763221110000 11235
Q ss_pred EEEEeccCC-CC-----------------------------------------ccCCceeeEeeeCccCCeEEEEEcCCC
Q 041206 71 HSWVHSVDG-DN-----------------------------------------TTNSLATLMKLNGHKKAVTNVGLPSGS 108 (371)
Q Consensus 71 ~~~~~~~~~-~~-----------------------------------------~~~~~~~~~~l~~h~~~V~~~~~~~~~ 108 (371)
+.|+..... .. .... .....+.+|...+.++.|+++
T Consensus 137 ~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~-~~~~~l~~~~~~v~~~~~s~d- 214 (1045)
T 1k32_A 137 YRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-GAFKKIVDMSTHVSSPVIVGH- 214 (1045)
T ss_dssp EEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEET-TEEEEEECCSSCCEEEEEETT-
T ss_pred EEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCC-CCeEECcCCCCcccceEEeCC-
Confidence 555422110 00 0011 233456889999999999988
Q ss_pred CEEEEEeCCCcEEEEECCC-CceEEEEeCCC--eeEEEeecCCEEEEecCCcEEEEEeCCC-------------------
Q 041206 109 NKLYSGSRDGRVSVWDRDS-GRCVNVITNGA--EIGCLISEGSWVFLGLPNAVKSWRVNAA------------------- 166 (371)
Q Consensus 109 ~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------------- 166 (371)
.++++++.|+.++||.+.. +.....+..+. ...++.++++.++.+.++.+.+|+....
T Consensus 215 ~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~ 294 (1045)
T 1k32_A 215 RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIIS 294 (1045)
T ss_dssp EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEE
T ss_pred EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCccccccccccc
Confidence 6778888899999998653 33333443322 2346677888888888999999986322
Q ss_pred --CeeEEEEe-CC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc--ceEEEEecCCce-eEecccceeeeeCCCeE
Q 041206 167 --SVNALVVN-ND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL--WFCSLSSSNDTR-WNSKEEAAVFEFCGHTT 238 (371)
Q Consensus 167 --~v~~~~~~-~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i 238 (371)
.+.+++|+ |+ .+++++ ++.|.+|++..+ +.. .+..+. .+..++|+ |++ ++.+ +.++.+
T Consensus 295 ~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~----~~~-~~~~~~~~~~~~~~~s-dg~~l~~~-------s~~~~l 360 (1045)
T 1k32_A 295 IPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGT----YVL-KVPEPLRIRYVRRGGD-TKVAFIHG-------TREGDF 360 (1045)
T ss_dssp CGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSS----BEE-ECSCCSCEEEEEECSS-SEEEEEEE-------ETTEEE
T ss_pred ccccceeeecCCCCCEEEEEE-cCEEEEEcCCCC----ceE-EccCCCcceEEeeeEc-CCCeEEEE-------ECCCce
Confidence 47889999 98 677766 889999999876 333 344443 78999999 986 7777 778889
Q ss_pred E-EEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCccee----cceEEEEecCCCCEEEEec
Q 041206 239 R-TWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAEL----SSLFGMLDAEAKPVLFSSG 311 (371)
Q Consensus 239 ~-iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~ 311 (371)
. +||+.+++... +.+|...+..++|+ +++|++++.++.|++||+...+..... ..+..+.+++++++|++++
T Consensus 361 ~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~ 439 (1045)
T 1k32_A 361 LGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGF 439 (1045)
T ss_dssp EEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEE
T ss_pred EEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEe
Confidence 8 99998876654 44788899999999 679999999999999999776532211 1223344555666787776
Q ss_pred CC----------CeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEcc
Q 041206 312 KD----------SAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 312 ~d----------~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~ 362 (371)
.+ +.|++||+.+++......+...+..++|+||| .|+.++.++...+|+..
T Consensus 440 ~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 440 PLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp EECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred cCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 54 48999999988744333356778899999999 88888888887777754
No 133
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=1.5e-20 Score=187.99 Aligned_cols=326 Identities=10% Similarity=0.002 Sum_probs=224.3
Q ss_pred ccCCCCceeeccCcc------cccceeEEEEEeeccceeeeeeeecceeeccceeeC--CccceEEEEEeccCCCCccCC
Q 041206 14 KHSEGGETMMSDDDD------LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYG--DKCRFLHSWVHSVDGDNTTNS 85 (371)
Q Consensus 14 ~~sp~g~~l~~~~~d------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~ 85 (371)
.||| +.++....+ ...+ ....+..|...+.+++++|.+.++....... .....|++|+ ..+
T Consensus 21 ~~S~--~~iaf~~~~~l~~~~~~gg-~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d--------~~~ 89 (1045)
T 1k32_A 21 DIHG--DRIIFVCCDDLWEHDLKSG-STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYN--------GEN 89 (1045)
T ss_dssp EEET--TEEEEEETTEEEEEETTTC-CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEE--------TTT
T ss_pred EEeC--CEEEEEECCcEEEEECCCC-cEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEE--------CCC
Confidence 4664 456654322 2233 3456778999999999999988766433321 2345788888 223
Q ss_pred ceeeEeeeCccCCe-------EEEEEcCCCCEEEEEeCC------CcEEEEECCCCceEEEEeC----------------
Q 041206 86 LATLMKLNGHKKAV-------TNVGLPSGSNKLYSGSRD------GRVSVWDRDSGRCVNVITN---------------- 136 (371)
Q Consensus 86 ~~~~~~l~~h~~~V-------~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~---------------- 136 (371)
+ ....+.+|...+ ..++|+|||+++++++.+ ..|.+|++.+++.......
T Consensus 90 g-~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~ 168 (1045)
T 1k32_A 90 G-EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGR 168 (1045)
T ss_dssp T-EEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEE
T ss_pred C-CeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEec
Confidence 3 367888999988 999999999988888754 3588888876654322111
Q ss_pred ----------------------------------CCeeEEEeecCC-EEEE-ecCCcEEEEEeCC--C---------Cee
Q 041206 137 ----------------------------------GAEIGCLISEGS-WVFL-GLPNAVKSWRVNA--A---------SVN 169 (371)
Q Consensus 137 ----------------------------------~~~~~~~~~~~~-~~~~-~~~~~i~~~~~~~--~---------~v~ 169 (371)
...+.+..+.+. ++++ ..++.+.+|.+.. + .+.
T Consensus 169 ~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~ 248 (1045)
T 1k32_A 169 NTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYY 248 (1045)
T ss_dssp SCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSC
T ss_pred cCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcc
Confidence 011122222233 3333 3457778887643 1 345
Q ss_pred EEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEec-----------Cc-ceEEEEec-CCce-eEecccceeeee
Q 041206 170 ALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRA-----------PL-WFCSLSSS-NDTR-WNSKEEAAVFEF 233 (371)
Q Consensus 170 ~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-----------~~-~v~~~~~~-~~~~-l~~~~~~~~~~~ 233 (371)
..+|+|+ .++.+ .++.|++||+... .+..+.. +. .+.+++|+ |||+ ++++ +
T Consensus 249 ~~~~SpDG~~la~~-~~~~i~~~d~~~~-----~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~-------~ 315 (1045)
T 1k32_A 249 PRHLNTDGRRILFS-KGGSIYIFNPDTE-----KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFV-------S 315 (1045)
T ss_dssp EEEEEESSSCEEEE-ETTEEEEECTTTC-----CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEE-------E
T ss_pred eeeEcCCCCEEEEE-eCCEEEEecCCce-----EeeeeccCcccccccccccccccceeeecCCCCCEEEEE-------E
Confidence 6678877 56665 5889999998432 2223333 33 68899999 9997 6666 5
Q ss_pred CCCeEEEEECCCceEEEEeecCCC-cEEEEEEc-CCeEEEEeCCCcEE-EEEccCCCCc---ceecceEEEEecCCCCEE
Q 041206 234 CGHTTRTWNLDNLECVQTLKGHSD-TVTSLLFW-DEYLFSSSLDETIK-IWLYTHTKNN---AELSSLFGMLDAEAKPVL 307 (371)
Q Consensus 234 ~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~-~~~l~s~~~dg~i~-iwd~~~~~~~---~~~~~~~~~~~~~~~~~l 307 (371)
++.+++|++.+++... +..|.. .+..++|+ ++.|++++.+..+. +||+...... .....+..+.+++++++|
T Consensus 316 -~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~l 393 (1045)
T 1k32_A 316 -RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFA 393 (1045)
T ss_dssp -TTEEEEECTTSSBEEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEE
T ss_pred -cCEEEEEcCCCCceEE-ccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEE
Confidence 8899999999877543 566777 88999998 55788888888888 8897654321 112234555666777799
Q ss_pred EEecCCCeEEEEEcCCcceeeee-cCCceEEEEEeCCCC-eEEeeCCCC----------cEEEEEccccce
Q 041206 308 FSSGKDSAIRLYELPSFKLRARI-FSRREVEVDQIGPAG-LFFPGDASG----------SVGVWKWLLAEQ 366 (371)
Q Consensus 308 ~~~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~-~l~~~~~dg----------~i~iw~~~~~~~ 366 (371)
++++.++.|++||+.+++..... .+...+..++|+||| +|++++.++ .|++||+.+++.
T Consensus 394 a~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~ 464 (1045)
T 1k32_A 394 VVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI 464 (1045)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE
T ss_pred EEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE
Confidence 99999999999999998877666 467788999999999 787776544 999999987653
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=7.1e-20 Score=159.51 Aligned_cols=257 Identities=11% Similarity=0.060 Sum_probs=177.3
Q ss_pred CCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCce-EEEEeCCCeeE
Q 041206 64 GDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSR-DGRVSVWDRDSGRC-VNVITNGAEIG 141 (371)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~-~~~~~~~~~~~ 141 (371)
...++.|.+|+ ..+++.+..+..+...+ .++|+|+++++++++. ++.|.+||..+++. ...+..+.
T Consensus 16 ~~~~~~v~~~d--------~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--- 83 (331)
T 3u4y_A 16 EQHLRRISFFS--------TDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ--- 83 (331)
T ss_dssp EGGGTEEEEEE--------TTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS---
T ss_pred ecCCCeEEEEe--------CcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC---
Confidence 45667899999 44567777777777777 9999999997777665 88999999999886 55544322
Q ss_pred EEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCC---eEEEEeccCCCCcceeeEEEecCcceEEEEe
Q 041206 142 CLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGG---VISVWKGTFVANPFKQVASIRAPLWFCSLSS 216 (371)
Q Consensus 142 ~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 216 (371)
....+++++|+ +++++..++ .|.+||+.++ +.+..+..+....+++|
T Consensus 84 ------------------------~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~----~~~~~~~~~~~~~~~~~ 135 (331)
T 3u4y_A 84 ------------------------SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN----KFISTIPIPYDAVGIAI 135 (331)
T ss_dssp ------------------------SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT----EEEEEEECCTTEEEEEE
T ss_pred ------------------------CCccceEECCCCCEEEEecCCCCcccEEEEECCCC----CeEEEEECCCCccceEE
Confidence 23444888888 666554443 8999999988 77777766567799999
Q ss_pred cCCce-eE-ecccceeeeeCCCe-EEEEECCCceEE----EEeecCCCcEEEEEEc--CCeE-EEEeCCCcEEEEEccCC
Q 041206 217 SNDTR-WN-SKEEAAVFEFCGHT-TRTWNLDNLECV----QTLKGHSDTVTSLLFW--DEYL-FSSSLDETIKIWLYTHT 286 (371)
Q Consensus 217 ~~~~~-l~-~~~~~~~~~~~dg~-i~iwd~~~~~~~----~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i~iwd~~~~ 286 (371)
+|+++ ++ +. ..++. |.+|++.....+ ............++|+ ++++ +++..++.|++||+...
T Consensus 136 spdg~~l~~~~-------~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 208 (331)
T 3u4y_A 136 SPNGNGLILID-------RSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNP 208 (331)
T ss_dssp CTTSSCEEEEE-------ETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSST
T ss_pred CCCCCEEEEEe-------cCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 99996 54 44 55577 999998753322 1122344567899998 5545 55557899999998866
Q ss_pred CC---ccee---cceEEEEecCCCCEEE-EecCCCeEEEEEcCCcce--eeeecC-----C---ceEEEEEeCCCC-eE-
Q 041206 287 KN---NAEL---SSLFGMLDAEAKPVLF-SSGKDSAIRLYELPSFKL--RARIFS-----R---REVEVDQIGPAG-LF- 347 (371)
Q Consensus 287 ~~---~~~~---~~~~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~--~~~~~~-----~---~~v~~~~~s~~~-~l- 347 (371)
+. ...+ .....+.+.+++++++ +...++.|.+||+.+++. +..+.. . .....++|+|++ +|
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 288 (331)
T 3u4y_A 209 ENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLF 288 (331)
T ss_dssp TSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEE
T ss_pred cccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEE
Confidence 64 2211 1222334445555554 445678899999998876 332221 1 122568999999 54
Q ss_pred EeeCCCCcEEEEEcccccee
Q 041206 348 FPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 348 ~~~~~dg~i~iw~~~~~~~~ 367 (371)
+++..++.|.+|++......
T Consensus 289 v~~~~~~~v~v~d~~~~~~~ 308 (331)
T 3u4y_A 289 ISANISRELKVFTISGKVVG 308 (331)
T ss_dssp EEETTTTEEEEEETTSCEEE
T ss_pred EecCCCCcEEEEEecCCccc
Confidence 56666789999999876543
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.89 E-value=9.1e-21 Score=183.18 Aligned_cols=307 Identities=11% Similarity=0.033 Sum_probs=203.7
Q ss_pred ccceeeeeeeecceeeccceeeC--CccceEEEEEeccCCCCccCCceeeEeeeCccC----------------------
Q 041206 42 GFGLAAMAIRVCNNWISDSCVYG--DKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKK---------------------- 97 (371)
Q Consensus 42 ~~~v~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~---------------------- 97 (371)
...+..++++|.+.++......+ .....|++|+ ..+++....+..|..
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYD--------IGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAA 107 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEE--------TTTCCEEEEECGGGTC--------------------C
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEE--------CCCCceeEccchhhcccccccccchhhhhhhhhhhcc
Confidence 34566778888766544221101 1122788888 334455555554433
Q ss_pred --CeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---ceEEEEeCCCeeEEE--eecCCEEEEecCCcEEEEEeCCCC---
Q 041206 98 --AVTNVGLPSGSNKLYSGSRDGRVSVWDRDSG---RCVNVITNGAEIGCL--ISEGSWVFLGLPNAVKSWRVNAAS--- 167 (371)
Q Consensus 98 --~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~--- 167 (371)
.|.+++|+|||++|++++. +.|++||+.++ +..........+..+ .+++++++...++.|.+|++.++.
T Consensus 108 ~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 108 MTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEE
T ss_pred ccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEE
Confidence 3889999999999999987 99999999988 544433333445444 467898888888899999987651
Q ss_pred ------------------------eeEEEEeCC--EEEEEeCCC---------------------------------eEE
Q 041206 168 ------------------------VNALVVNND--LLFAGSEGG---------------------------------VIS 188 (371)
Q Consensus 168 ------------------------v~~~~~~~~--~l~~~~~dg---------------------------------~v~ 188 (371)
+.+++|+|+ +|++++.|+ .|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 366899998 777777655 788
Q ss_pred EEeccC-CCCcceeeEEEe--cCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCCC----cE
Q 041206 189 VWKGTF-VANPFKQVASIR--APL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSD----TV 259 (371)
Q Consensus 189 iwd~~~-~~~~~~~~~~~~--~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~v 259 (371)
+||+.+ + +...... .+. .+.+++| |||+ |+.+... ....+..|++||+.+++....+..+.. .+
T Consensus 267 ~~d~~~~~----~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~--~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 339 (741)
T 2ecf_A 267 VISPAEQA----QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQS--RDQKKLDLVEVTLASNQQRVLAHETSPTWVPLH 339 (741)
T ss_dssp EECSSTTC----CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEE--TTSSEEEEEEEETTTCCEEEEEEEECSSCCCCC
T ss_pred EEECCCCC----ceEEecCCCCcceEEEEEEe-CCCCEEEEEEec--ccCCeEEEEEEECCCCceEEEEEcCCCCcCCcC
Confidence 999987 6 3322222 355 8999999 9996 5544000 002467899999999988777765543 45
Q ss_pred EEEEEc--CCeEEEEeCCCcEEEEEccCCCCccee----cceEEE--EecCCCCEEEEecCCC--eEEEEEcCC-cceee
Q 041206 260 TSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAEL----SSLFGM--LDAEAKPVLFSSGKDS--AIRLYELPS-FKLRA 328 (371)
Q Consensus 260 ~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~--~~~~~~~~l~~~~~d~--~i~iwd~~~-~~~~~ 328 (371)
..++|+ ++++++++.|+.++||.+........+ ..+... ++++++.++++++.++ .+++|++.. +....
T Consensus 340 ~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~ 419 (741)
T 2ecf_A 340 NSLRFLDDGSILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQ 419 (741)
T ss_dssp SCCEECTTSCEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCE
T ss_pred CceEECCCCeEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCee
Confidence 678898 568888999998888876532211111 123232 4455543445666666 899999864 45455
Q ss_pred eecCCceEEEEEeCCCC-eEEeeCC-C---CcEEEEEcccc
Q 041206 329 RIFSRREVEVDQIGPAG-LFFPGDA-S---GSVGVWKWLLA 364 (371)
Q Consensus 329 ~~~~~~~v~~~~~s~~~-~l~~~~~-d---g~i~iw~~~~~ 364 (371)
.+.....+..++|+||| .|+.... . ..+.+|+...+
T Consensus 420 ~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 420 RLSKAPGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp ECCCSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred ecccCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 55556678899999999 5554432 2 46888887544
No 136
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=2.3e-20 Score=162.76 Aligned_cols=256 Identities=11% Similarity=0.029 Sum_probs=181.7
Q ss_pred CCccceEEEEEeccCCCCccCCceeeEeeeCcc-C-CeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEEEeCCCee
Q 041206 64 GDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHK-K-AVTNVGLPSGSNKL-YSGSRDGRVSVWDRDSGRCVNVITNGAEI 140 (371)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~-~-~V~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 140 (371)
+..++.+.+|+ ..+++.+..+.... . .+..++|+|+++++ +++..++.|.+||+.+++.+..+.....-
T Consensus 7 ~~~~~~v~~~d--------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 7 PARPDKLVVID--------TEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EETTTEEEEEE--------TTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cCCCCeEEEEE--------CCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc
Confidence 45677899999 34567777776332 2 48899999999766 45566789999999999988776643200
Q ss_pred EEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEe------------CCCeEEEEeccCCCCcceeeEEEe
Q 041206 141 GCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGS------------EGGVISVWKGTFVANPFKQVASIR 206 (371)
Q Consensus 141 ~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~------------~dg~v~iwd~~~~~~~~~~~~~~~ 206 (371)
. +...+.+++++|+ +++++. .++.|.+||+.++ +....+.
T Consensus 79 ~----------------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----~~~~~~~ 132 (337)
T 1pby_B 79 E----------------------RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL----SRRKAFE 132 (337)
T ss_dssp E----------------------EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT----EEEEEEE
T ss_pred c----------------------ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC----cEEEEEe
Confidence 0 0013567888877 666665 5799999999887 6666666
Q ss_pred cCcceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCC--CcEEEEEEc--CCeEEEEeC-CC----
Q 041206 207 APLWFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHS--DTVTSLLFW--DEYLFSSSL-DE---- 276 (371)
Q Consensus 207 ~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~--~~~l~s~~~-dg---- 276 (371)
....+.+++|+|+++ ++++ ++.|++||+.+++.+..+..+. .++ .|+ +.+++..+. ++
T Consensus 133 ~~~~~~~~~~s~dg~~l~~~---------~~~i~~~d~~~~~~~~~~~~~~~~~~~---~~s~dg~~l~~~~~~~~~~~~ 200 (337)
T 1pby_B 133 APRQITMLAWARDGSKLYGL---------GRDLHVMDPEAGTLVEDKPIQSWEAET---YAQPDVLAVWNQHESSGVMAT 200 (337)
T ss_dssp CCSSCCCEEECTTSSCEEEE---------SSSEEEEETTTTEEEEEECSTTTTTTT---BCCCBCCCCCCCCTTTTEEEE
T ss_pred CCCCcceeEECCCCCEEEEe---------CCeEEEEECCCCcEeeeeeccccCCCc---eeCCCccEEeeeccCCCceee
Confidence 544778899999997 5544 5789999999999887776543 222 344 343433322 22
Q ss_pred -------------------cEEEEEccCCCCcc-----eecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecC
Q 041206 277 -------------------TIKIWLYTHTKNNA-----ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFS 332 (371)
Q Consensus 277 -------------------~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 332 (371)
.|.+||+...+... .......+.+.+++++++++ ++.|++||+.+++.+..+..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~ 278 (337)
T 1pby_B 201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL 278 (337)
T ss_dssp EEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC
T ss_pred eeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC
Confidence 46889987655320 00122334555566677777 78999999999988877776
Q ss_pred CceEEEEEeCCCC-eEEeeCCCCcEEEEEcccccee
Q 041206 333 RREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 333 ~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~ 367 (371)
...+.+++|+|++ +|++++.++.|++||+.+++..
T Consensus 279 ~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 279 PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 6778999999999 7888888999999999877644
No 137
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.88 E-value=2.9e-19 Score=156.88 Aligned_cols=276 Identities=11% Similarity=0.084 Sum_probs=194.3
Q ss_pred eeccceeeeeeeecceeeccceeeC---CccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEE-Ee
Q 041206 40 MFGFGLAAMAIRVCNNWISDSCVYG---DKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYS-GS 115 (371)
Q Consensus 40 ~h~~~v~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s-~~ 115 (371)
....++..++++|....+......+ ..++.+..|+ ..+++.+..+.. ...+..++|+|++++++. ..
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d--------~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~ 108 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLD--------PVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNT 108 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEEC--------TTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEET
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEc--------CCCCeEEEEEec-CCCcceEEECCCCCEEEEEec
Confidence 4556777888888765432222111 1266888888 445677777764 345789999999996555 45
Q ss_pred CCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEe--CCCeEEEEe
Q 041206 116 RDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGS--EGGVISVWK 191 (371)
Q Consensus 116 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~--~dg~v~iwd 191 (371)
.++.|.+||..+++.+..+..+.....-. .....+.+++++|+ .+++++ .++.|.+||
T Consensus 109 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d 170 (353)
T 3vgz_A 109 VNSAVTAIDAKTGEVKGRLVLDDRKRTEE------------------VRPLQPRELVADDATNTVYISGIGKESVIWVVD 170 (353)
T ss_dssp TTTEEEEEETTTCCEEEEEESCCCCCCSS------------------CCCCEEEEEEEETTTTEEEEEEESSSCEEEEEE
T ss_pred CCCEEEEEeCCCCeeEEEEecCCCccccc------------------cCCCCCceEEECCCCCEEEEEecCCCceEEEEc
Confidence 67999999999999888776532100000 00002678899887 555555 478999999
Q ss_pred ccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeec----CCCcEEEEEEc
Q 041206 192 GTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKG----HSDTVTSLLFW 265 (371)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~ 265 (371)
+.++ +....+..+. .+.+++++|+++ ++++ +.++.|.+||+.+++.+..+.. +...+.+++|+
T Consensus 171 ~~~~----~~~~~~~~~~~~~~~~~~s~dg~~l~~~-------~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s 239 (353)
T 3vgz_A 171 GGNI----KLKTAIQNTGKMSTGLALDSEGKRLYTT-------NADGELITIDTADNKILSRKKLLDDGKEHFFINISLD 239 (353)
T ss_dssp TTTT----EEEEEECCCCTTCCCCEEETTTTEEEEE-------CTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEE
T ss_pred CCCC----ceEEEecCCCCccceEEECCCCCEEEEE-------cCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEEC
Confidence 9988 7777777555 788999999986 7777 8899999999999998887764 45568889998
Q ss_pred --CCeEEEEe-CCCcEEEEEccCCCCccee---cceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEE
Q 041206 266 --DEYLFSSS-LDETIKIWLYTHTKNNAEL---SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVD 339 (371)
Q Consensus 266 --~~~l~s~~-~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~ 339 (371)
+++++.++ .++.|.+||+...+....+ ......+.+++..++++...++.|.+||+.+++.+..+.....+.++
T Consensus 240 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 319 (353)
T 3vgz_A 240 TARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSL 319 (353)
T ss_dssp TTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEE
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeE
Confidence 56665555 4599999998766532211 11222345555535556667999999999999988888777789999
Q ss_pred EeCCCC-eEEeeCCC
Q 041206 340 QIGPAG-LFFPGDAS 353 (371)
Q Consensus 340 ~~s~~~-~l~~~~~d 353 (371)
+|+|+| .|+.+..+
T Consensus 320 ~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 320 ALSADGKTLYVSVKQ 334 (353)
T ss_dssp EECTTSCEEEEEEEC
T ss_pred EEcCCCCEEEEEEcc
Confidence 999999 55554443
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=3.1e-20 Score=158.60 Aligned_cols=241 Identities=10% Similarity=0.018 Sum_probs=169.3
Q ss_pred CCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEeCCCeeEE
Q 041206 64 GDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDS-GRCVNVITNGAEIGC 142 (371)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~ 142 (371)
++.++.|++|+ ....+ ...+..|...|.+++|+|++++|++++ ++.|++||+.+ ++........
T Consensus 18 ~~~~~~i~~~d--------~~~~~-~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~----- 82 (297)
T 2ojh_A 18 GSMRSSIEIFN--------IRTRK-MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGF----- 82 (297)
T ss_dssp CCCCEEEEEEE--------TTTTE-EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTT-----
T ss_pred CCcceeEEEEe--------CCCCc-eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccc-----
Confidence 56778999999 23334 345667999999999999999999987 78999999998 7766544322
Q ss_pred EeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEe--CCCeEEEEec--cCCCCcceeeEEEecCcceEEEEe
Q 041206 143 LISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGS--EGGVISVWKG--TFVANPFKQVASIRAPLWFCSLSS 216 (371)
Q Consensus 143 ~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~--~dg~v~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~ 216 (371)
+...+.+++|+|+ ++++++ .++...+|.+ .+. ....+..+..+..++|
T Consensus 83 ---------------------~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~ 136 (297)
T 2ojh_A 83 ---------------------ATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGG-----TPRLMTKNLPSYWHGW 136 (297)
T ss_dssp ---------------------CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCC-----CCEECCSSSSEEEEEE
T ss_pred ---------------------ccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCC-----ceEEeecCCCccceEE
Confidence 1134788999988 788877 3345555554 443 2334444447888999
Q ss_pred cCCce-eE-ecccceeeeeCCCeEEEEEC--CCceEEEEeecCCCcEEEEEEc--CCeEEEEe-CCCcEEEEEccCCC-C
Q 041206 217 SNDTR-WN-SKEEAAVFEFCGHTTRTWNL--DNLECVQTLKGHSDTVTSLLFW--DEYLFSSS-LDETIKIWLYTHTK-N 288 (371)
Q Consensus 217 ~~~~~-l~-~~~~~~~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~iwd~~~~~-~ 288 (371)
+|+++ ++ ++ ..++.+++|++ .+++ ...+..+...+.+++|+ +++|+.++ .++.+++|++.... .
T Consensus 137 spdg~~l~~~~-------~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~ 208 (297)
T 2ojh_A 137 SPDGKSFTYCG-------IRDQVFDIYSMDIDSGV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS 208 (297)
T ss_dssp CTTSSEEEEEE-------EETTEEEEEEEETTTCC-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred CCCCCEEEEEE-------CCCCceEEEEEECCCCc-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCC
Confidence 99996 54 67 78999999985 3443 45666788899999998 56666655 58999999976322 1
Q ss_pred cc----eecceEEEEecCCCCEEEEecCC-----------CeEEEEEcCCcceee--ee-cCCceEEEEEeCCCC-eEEe
Q 041206 289 NA----ELSSLFGMLDAEAKPVLFSSGKD-----------SAIRLYELPSFKLRA--RI-FSRREVEVDQIGPAG-LFFP 349 (371)
Q Consensus 289 ~~----~~~~~~~~~~~~~~~~l~~~~~d-----------~~i~iwd~~~~~~~~--~~-~~~~~v~~~~~s~~~-~l~~ 349 (371)
.. ....+..+.+.+++++|++++.+ +.|++||+.+++... .+ .+...+..++|+|++ .|++
T Consensus 209 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 288 (297)
T 2ojh_A 209 VERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAY 288 (297)
T ss_dssp EEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEE
T ss_pred cEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEE
Confidence 11 11234445555666677777655 569999999876533 22 246688999999999 7776
Q ss_pred eCCC
Q 041206 350 GDAS 353 (371)
Q Consensus 350 ~~~d 353 (371)
++.+
T Consensus 289 ~~~~ 292 (297)
T 2ojh_A 289 VRYF 292 (297)
T ss_dssp EEEC
T ss_pred EEec
Confidence 6654
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=1.3e-19 Score=159.24 Aligned_cols=233 Identities=12% Similarity=0.090 Sum_probs=174.4
Q ss_pred ccCCeEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCC
Q 041206 95 HKKAVTNVGLPSGSNKLYSGSR-------DGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAAS 167 (371)
Q Consensus 95 h~~~V~~~~~~~~~~~l~s~~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 167 (371)
....+..++|+|+++++++++. ++.|.+||..+++.+..+.... .
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~----------------------------~ 90 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL----------------------------K 90 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS----------------------------C
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC----------------------------C
Confidence 3457889999999999888874 5689999999999888776432 2
Q ss_pred eeEEEEeCC--EE-EEEeCCCeEEEEeccCCCCcceeeEEEecCc----------ceEEEEecCCce-eEecccceeeee
Q 041206 168 VNALVVNND--LL-FAGSEGGVISVWKGTFVANPFKQVASIRAPL----------WFCSLSSSNDTR-WNSKEEAAVFEF 233 (371)
Q Consensus 168 v~~~~~~~~--~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~----------~v~~~~~~~~~~-l~~~~~~~~~~~ 233 (371)
+..++++++ .+ ++...++.|.+||+.++ +....+..+. .+.+++++|+++ ++++ +
T Consensus 91 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-------~ 159 (353)
T 3vgz_A 91 PFGATINNTTQTLWFGNTVNSAVTAIDAKTG----EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYIS-------G 159 (353)
T ss_dssp CCSEEEETTTTEEEEEETTTTEEEEEETTTC----CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEE-------E
T ss_pred cceEEECCCCCEEEEEecCCCEEEEEeCCCC----eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEE-------e
Confidence 567788886 44 44555799999999988 6666666543 278999999986 5555 4
Q ss_pred --CCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCccee--------cceEEE-Ee
Q 041206 234 --CGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAEL--------SSLFGM-LD 300 (371)
Q Consensus 234 --~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~--------~~~~~~-~~ 300 (371)
.++.|.+||+.+++.+..+..+...+.+++|+ ++++++++.++.|.+||+...+..... .....+ +.
T Consensus 160 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s 239 (353)
T 3vgz_A 160 IGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLD 239 (353)
T ss_dssp ESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEE
T ss_pred cCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEEC
Confidence 47899999999999998887666668888887 678999999999999998765532111 122233 44
Q ss_pred cCCCCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC--eEEeeCCCCcEEEEEcccccee
Q 041206 301 AEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG--LFFPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 301 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~--~l~~~~~dg~i~iw~~~~~~~~ 367 (371)
+++..++++...++.|.+||+.+++.+..+....+ ..++|+|++ .+++...++.|.+||..+++..
T Consensus 240 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~ 307 (353)
T 3vgz_A 240 TARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV 307 (353)
T ss_dssp TTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence 44443444555569999999999988877764443 679999999 4556667999999999876654
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.86 E-value=2.8e-19 Score=171.89 Aligned_cols=255 Identities=13% Similarity=0.073 Sum_probs=176.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeE--EEeecCCEEEEecCCcEEEEEeCC-----C---
Q 041206 97 KAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIG--CLISEGSWVFLGLPNAVKSWRVNA-----A--- 166 (371)
Q Consensus 97 ~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~-----~--- 166 (371)
..|.+++|+|| +.++.+. ++.|++||+.+++..........+. .+.++++.++...++.|.+|++.+ +
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~ 159 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAI 159 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCE
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcE
Confidence 56999999999 6655554 5999999999988766655544443 455688888888899999999987 5
Q ss_pred -------C---------------eeEEEEeCC--EEEEEe---------------------------------CCCeEEE
Q 041206 167 -------S---------------VNALVVNND--LLFAGS---------------------------------EGGVISV 189 (371)
Q Consensus 167 -------~---------------v~~~~~~~~--~l~~~~---------------------------------~dg~v~i 189 (371)
. +.++.|+|+ +|++++ .+..|++
T Consensus 160 ~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~ 239 (706)
T 2z3z_A 160 AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGI 239 (706)
T ss_dssp ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEE
T ss_pred EeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEE
Confidence 1 378899998 777776 4468999
Q ss_pred EeccCCCCcceeeEEEe--cCc-ceEEEEecCCce-eEecccceeeeeCCC-----eEEEEECCCceEEEEee--cCCC-
Q 041206 190 WKGTFVANPFKQVASIR--APL-WFCSLSSSNDTR-WNSKEEAAVFEFCGH-----TTRTWNLDNLECVQTLK--GHSD- 257 (371)
Q Consensus 190 wd~~~~~~~~~~~~~~~--~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg-----~i~iwd~~~~~~~~~~~--~~~~- 257 (371)
||+.++ +...... .+. .+.+++|+||++ ++++ +.++ .|++||+.+++....+. .+..
T Consensus 240 ~d~~~~----~~~~~~~~~~~~~~~~~~~~spdg~~l~~~-------~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~ 308 (706)
T 2z3z_A 240 YHLATG----KTVYLQTGEPKEKFLTNLSWSPDENILYVA-------EVNRAQNECKVNAYDAETGRFVRTLFVETDKHY 308 (706)
T ss_dssp EETTTT----EEEECCCCSCTTCEEEEEEECTTSSEEEEE-------EECTTSCEEEEEEEETTTCCEEEEEEEEECSSC
T ss_pred EECCCC----ceEeeccCCCCceeEeeEEEECCCCEEEEE-------EeCCCCCeeEEEEEECCCCceeeEEEEccCCCe
Confidence 999887 4333222 345 899999999997 7776 6554 99999999983333332 2222
Q ss_pred --cEEEEEEcC----CeEEEEeCCCcEEEEEccCC-CCcce----ecceEE-E-EecCCCCEEEEecCCC----eEEEEE
Q 041206 258 --TVTSLLFWD----EYLFSSSLDETIKIWLYTHT-KNNAE----LSSLFG-M-LDAEAKPVLFSSGKDS----AIRLYE 320 (371)
Q Consensus 258 --~v~~~~~~~----~~l~s~~~dg~i~iwd~~~~-~~~~~----~~~~~~-~-~~~~~~~~l~~~~~d~----~i~iwd 320 (371)
.+.++.|++ +++++++.|+.+++|++... ..... ...+.. . +++++..+++++..++ .|..||
T Consensus 309 ~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 309 VEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID 388 (706)
T ss_dssp CCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred ECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence 245677864 58888889999999987632 21111 112322 3 4444443445555555 677778
Q ss_pred cCCcceeeeecCCceEEEEEeCCCC-eEEeeC-CC---CcEEEEEccccc
Q 041206 321 LPSFKLRARIFSRREVEVDQIGPAG-LFFPGD-AS---GSVGVWKWLLAE 365 (371)
Q Consensus 321 ~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~-~d---g~i~iw~~~~~~ 365 (371)
+.+++ ...+.+...+.+++|+||| +++... .+ +.|++||+.+++
T Consensus 389 ~~~~~-~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 389 IKGGK-TKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp TTCCC-CEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred cCCCC-ceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 87765 3444566778999999999 555543 33 569999998765
No 141
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.86 E-value=2.7e-19 Score=172.84 Aligned_cols=255 Identities=9% Similarity=-0.003 Sum_probs=182.5
Q ss_pred cCCeEEEEEcCCCCEEEEEeC-CC-----cEEEEECCCCceEEEEeCCC-------------------------eeE--E
Q 041206 96 KKAVTNVGLPSGSNKLYSGSR-DG-----RVSVWDRDSGRCVNVITNGA-------------------------EIG--C 142 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~l~s~~~-dg-----~v~iwd~~~~~~~~~~~~~~-------------------------~~~--~ 142 (371)
...|.+++|+|||++|++++. |+ .|++||+.+++....+..+. .+. .
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457999999999999999998 88 89999999998777665421 122 4
Q ss_pred EeecCCEEEEecCCcEEEEEeCCC-------------CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEec
Q 041206 143 LISEGSWVFLGLPNAVKSWRVNAA-------------SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRA 207 (371)
Q Consensus 143 ~~~~~~~~~~~~~~~i~~~~~~~~-------------~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 207 (371)
+.+++++++.+..+.|.+||+.++ .+.+++|+|+ +|+.++ ++.|++||+.++ +.......
T Consensus 116 ~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g----~~~~~~~~ 190 (741)
T 2ecf_A 116 WSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASG----RQMQLTAD 190 (741)
T ss_dssp ECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTT----EEEECCCC
T ss_pred ECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCC----CEEEeccC
Confidence 456788888877799999998765 4788999999 677766 569999999886 44333332
Q ss_pred Cc-c----------------eEEEEecCCce-eEecccceeeeeCCC---------------------------------
Q 041206 208 PL-W----------------FCSLSSSNDTR-WNSKEEAAVFEFCGH--------------------------------- 236 (371)
Q Consensus 208 ~~-~----------------v~~~~~~~~~~-l~~~~~~~~~~~~dg--------------------------------- 236 (371)
+. . +.+++|+|||+ |+++ +.|+
T Consensus 191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~-------~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~ 263 (741)
T 2ecf_A 191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYA-------RIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV 263 (741)
T ss_dssp CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEE-------EEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred CccceeccccceeeeeccccccceEECCCCCEEEEE-------EEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence 22 2 47899999997 7666 5544
Q ss_pred eEEEEECCC-ceEEEEee--cCCCcEEEEEEc-CCeEEEEeC-----CCcEEEEEccCCCCcceec--------ceEEEE
Q 041206 237 TTRTWNLDN-LECVQTLK--GHSDTVTSLLFW-DEYLFSSSL-----DETIKIWLYTHTKNNAELS--------SLFGML 299 (371)
Q Consensus 237 ~i~iwd~~~-~~~~~~~~--~~~~~v~~~~~~-~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~--------~~~~~~ 299 (371)
.|++||+.+ ++...... .|...+..++|. +++|+.++. +..|++||+...+...... .+....
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 343 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR 343 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEEECCCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE
Confidence 889999998 77654433 477788888883 457776553 5679999987765322110 111233
Q ss_pred ecCCCCEEEEecCCCeEEEEEcC-Ccceeeeec-CCceEEEE-EeCCCC-eE-EeeCCCC--cEEEEEccc
Q 041206 300 DAEAKPVLFSSGKDSAIRLYELP-SFKLRARIF-SRREVEVD-QIGPAG-LF-FPGDASG--SVGVWKWLL 363 (371)
Q Consensus 300 ~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~-~~~~v~~~-~~s~~~-~l-~~~~~dg--~i~iw~~~~ 363 (371)
+.++++++++++.++.++||.+. .+. ...+. +...+..+ .|+|++ .| ++++.++ .+++|++..
T Consensus 344 ~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 344 FLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred ECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 44455588999999988888765 333 44443 46677777 599999 44 5666666 899999864
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.85 E-value=1.2e-19 Score=174.76 Aligned_cols=269 Identities=8% Similarity=-0.038 Sum_probs=178.0
Q ss_pred eeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccC---CeEEEEEcCCCCEEEEEeCC----
Q 041206 45 LAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKK---AVTNVGLPSGSNKLYSGSRD---- 117 (371)
Q Consensus 45 v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~---~V~~~~~~~~~~~l~s~~~d---- 117 (371)
...++|+|.+.++. .+.++.+++|+ ..+++....+.+|.. .|.+++|||||++|++++.+
T Consensus 19 ~~~~~~spdg~~~~-----~~~dg~i~~~d--------~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~ 85 (723)
T 1xfd_A 19 DPEAKWISDTEFIY-----REQKGTVRLWN--------VETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIY 85 (723)
T ss_dssp CCCCCBSSSSCBCC-----CCSSSCEEEBC--------GGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCS
T ss_pred ccccEEcCCCcEEE-----EeCCCCEEEEE--------CCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccce
Confidence 45667888666443 24567899998 345566777777765 49999999999999999864
Q ss_pred -----CcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEE
Q 041206 118 -----GRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVW 190 (371)
Q Consensus 118 -----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iw 190 (371)
+.+.+||+.+++. ..+..... +...+..++|+|+ .|+.++. +.|++|
T Consensus 86 ~~~~~~~i~~~d~~~~~~-~~l~~~~~------------------------~~~~~~~~~~SPdG~~la~~~~-~~i~~~ 139 (723)
T 1xfd_A 86 QHSYTGYYVLSKIPHGDP-QSLDPPEV------------------------SNAKLQYAGWGPKGQQLIFIFE-NNIYYC 139 (723)
T ss_dssp SSCCCSEEEEEESSSCCC-EECCCTTC------------------------CSCCCSBCCBCSSTTCEEEEET-TEEEEE
T ss_pred eecceeeEEEEECCCCce-EeccCCcc------------------------ccccccccEECCCCCEEEEEEC-CeEEEE
Confidence 7788999998876 23322111 1223778889988 7777765 799999
Q ss_pred eccCCCCcceeeEEEecCc-ce------------------EEEEecCCce-eEecccceeeeeCC---------------
Q 041206 191 KGTFVANPFKQVASIRAPL-WF------------------CSLSSSNDTR-WNSKEEAAVFEFCG--------------- 235 (371)
Q Consensus 191 d~~~~~~~~~~~~~~~~~~-~v------------------~~~~~~~~~~-l~~~~~~~~~~~~d--------------- 235 (371)
|+.++ +.......+. .+ .+++|+|||+ |+.+ +.+
T Consensus 140 ~~~~g----~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~-------~~~~~~~~~~~~~~~~~~ 208 (723)
T 1xfd_A 140 AHVGK----QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA-------AINDSRVPIMELPTYTGS 208 (723)
T ss_dssp SSSSS----CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE-------EEECTTSCEEEECCCSSS
T ss_pred ECCCC----ceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEE-------EECCCccceEEeeccCCc
Confidence 99887 4444333333 33 7899999996 6665 322
Q ss_pred -------------------CeEEEEECCCceEEEEeecC------CCcEEEEEEc--CCeEEEEeC----CCcEEEEEcc
Q 041206 236 -------------------HTTRTWNLDNLECVQTLKGH------SDTVTSLLFW--DEYLFSSSL----DETIKIWLYT 284 (371)
Q Consensus 236 -------------------g~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~--~~~l~s~~~----dg~i~iwd~~ 284 (371)
..|++||+.+++....+..+ ...+.+++|+ ++++++.+. +..|++||+.
T Consensus 209 ~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~ 288 (723)
T 1xfd_A 209 IYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT 288 (723)
T ss_dssp SSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETT
T ss_pred CCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCC
Confidence 28999999988865666654 5688999999 556666543 3579999987
Q ss_pred CCCCcceec-----ce-----EEEEecCCCCEEEE-ecCCC------eEEEEE-cCCcce--eeeec-CCceEEE-EEeC
Q 041206 285 HTKNNAELS-----SL-----FGMLDAEAKPVLFS-SGKDS------AIRLYE-LPSFKL--RARIF-SRREVEV-DQIG 342 (371)
Q Consensus 285 ~~~~~~~~~-----~~-----~~~~~~~~~~~l~~-~~~d~------~i~iwd-~~~~~~--~~~~~-~~~~v~~-~~~s 342 (371)
..+...... .+ ...+++++..+++. +..++ .|.+|| ..+++. ...+. +...+.. ++|+
T Consensus 289 ~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~s 368 (723)
T 1xfd_A 289 TGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYD 368 (723)
T ss_dssp TCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEE
T ss_pred CCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEc
Confidence 665322110 01 22355555544444 55666 577777 344431 33443 3344544 6999
Q ss_pred CCC-eEEe-eCCC--CcEEEEEccc
Q 041206 343 PAG-LFFP-GDAS--GSVGVWKWLL 363 (371)
Q Consensus 343 ~~~-~l~~-~~~d--g~i~iw~~~~ 363 (371)
||| .|+. +..+ +.+++|++..
T Consensus 369 pdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 369 EKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp TTTTEEEEEESSSCTTCCEEEEECS
T ss_pred CCCCEEEEEEcCCCCcceEEEEEeC
Confidence 999 6654 4444 8899999864
No 143
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.85 E-value=1.3e-18 Score=151.41 Aligned_cols=224 Identities=11% Similarity=0.043 Sum_probs=161.0
Q ss_pred EEcCCCCE-EEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEE
Q 041206 103 GLPSGSNK-LYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLF 179 (371)
Q Consensus 103 ~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~ 179 (371)
.|.+++++ +++++.++.|++||..+++.+..+..+. ..+ .++++|+ +++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~---------------------------~~~-~~~~s~dg~~l~ 55 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGY---------------------------DFV-DTAITSDCSNVV 55 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCC---------------------------CEE-EEEECSSSCEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccC---------------------------Ccc-eEEEcCCCCEEE
Confidence 45665554 7778889999999999999887766432 235 8889887 566
Q ss_pred EEeC-CCeEEEEeccCCCCccee-eEEEecCc-ceEEEEecCCce-eEecccceeeeeCC-C--eEEEEECCCceEEEEe
Q 041206 180 AGSE-GGVISVWKGTFVANPFKQ-VASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCG-H--TTRTWNLDNLECVQTL 252 (371)
Q Consensus 180 ~~~~-dg~v~iwd~~~~~~~~~~-~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~d-g--~i~iwd~~~~~~~~~~ 252 (371)
+++. ++.|.+||+.++ +. ...+..+. +..+++|+|+++ ++++ ..+ + .|.+||+.+++.+..+
T Consensus 56 ~~~~~~~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-------~~~~~~~~i~v~d~~~~~~~~~~ 124 (331)
T 3u4y_A 56 VTSDFCQTLVQIETQLE----PPKVVAIQEGQSSMADVDITPDDQFAVTV-------TGLNHPFNMQSYSFLKNKFISTI 124 (331)
T ss_dssp EEESTTCEEEEEECSSS----SCEEEEEEECSSCCCCEEECTTSSEEEEC-------CCSSSSCEEEEEETTTTEEEEEE
T ss_pred EEeCCCCeEEEEECCCC----ceeEEecccCCCCccceEECCCCCEEEEe-------cCCCCcccEEEEECCCCCeEEEE
Confidence 5555 889999999987 44 55666666 555599999997 6655 444 3 9999999999998887
Q ss_pred ecCCCcEEEEEEc--CCeEE-EEeCCCc-EEEEEccCCCCcc----e----ecceEEEEecCCCC-EEEEecCCCeEEEE
Q 041206 253 KGHSDTVTSLLFW--DEYLF-SSSLDET-IKIWLYTHTKNNA----E----LSSLFGMLDAEAKP-VLFSSGKDSAIRLY 319 (371)
Q Consensus 253 ~~~~~~v~~~~~~--~~~l~-s~~~dg~-i~iwd~~~~~~~~----~----~~~~~~~~~~~~~~-~l~~~~~d~~i~iw 319 (371)
..+ ....+++|+ +++++ +...++. |.+|++....... . ......+.+.++++ +++++..++.|++|
T Consensus 125 ~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 203 (331)
T 3u4y_A 125 PIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGIL 203 (331)
T ss_dssp ECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred ECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEE
Confidence 754 456899998 44454 4456688 9999976433210 0 01233344455555 45566678999999
Q ss_pred EcCCcce---eeeecCCceEEEEEeCCCC-eE-EeeCCCCcEEEEEccccce
Q 041206 320 ELPSFKL---RARIFSRREVEVDQIGPAG-LF-FPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 320 d~~~~~~---~~~~~~~~~v~~~~~s~~~-~l-~~~~~dg~i~iw~~~~~~~ 366 (371)
|+.+++. +..+.....+..++|+|+| ++ ++...++.|.+||+.+++.
T Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 204 ETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp ECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred ECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence 9999888 7777777788999999999 45 4555688999999987765
No 144
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.85 E-value=2.4e-19 Score=157.09 Aligned_cols=224 Identities=13% Similarity=0.036 Sum_probs=162.1
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EE
Q 041206 101 NVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LL 178 (371)
Q Consensus 101 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l 178 (371)
.++++++++++++++.+++|++||..+++.+..+..+. ...+..++++|+ .+
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~--------------------------~~~~~~~~~s~dg~~~ 57 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD--------------------------KFGPGTAMMAPDNRTA 57 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS--------------------------CCSSCEEEECTTSSEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCC--------------------------CCCCceeEECCCCCEE
Confidence 45688899999999999999999999999888776432 013667888887 44
Q ss_pred -EEEeCCCeEEEEeccCCCCcceeeEEEecC------c-ceEEEEecCCce-eEecccceeeeeCC------------Ce
Q 041206 179 -FAGSEGGVISVWKGTFVANPFKQVASIRAP------L-WFCSLSSSNDTR-WNSKEEAAVFEFCG------------HT 237 (371)
Q Consensus 179 -~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~------~-~v~~~~~~~~~~-l~~~~~~~~~~~~d------------g~ 237 (371)
++...++.|.+||+.++ +....+... . .+.+++|+|+++ ++++ +.+ +.
T Consensus 58 ~v~~~~~~~i~~~d~~t~----~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~-------~~~~~~~~~~~~~~~~~ 126 (349)
T 1jmx_B 58 YVLNNHYGDIYGIDLDTC----KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYAT-------VNPTQRLNDHYVVKPPR 126 (349)
T ss_dssp EEEETTTTEEEEEETTTT----EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEE-------EEEEEECSSCEEECCCE
T ss_pred EEEeCCCCcEEEEeCCCC----cEEEEEEcccccccccccccceEECCCCCEEEEE-------cccccccccccccCCCe
Confidence 45556899999999887 666555532 2 478999999996 6666 544 89
Q ss_pred EEEEECCCceE---EEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCccee--c-----------------
Q 041206 238 TRTWNLDNLEC---VQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAEL--S----------------- 293 (371)
Q Consensus 238 i~iwd~~~~~~---~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~--~----------------- 293 (371)
|.+||+.+++. +..+. +...+.+++|+ ++ +++++. .|.+||+...+....+ .
T Consensus 127 i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (349)
T 1jmx_B 127 LEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWP 202 (349)
T ss_dssp EEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCC
T ss_pred EEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeec
Confidence 99999988443 34444 33468888898 45 555543 4999997654421100 0
Q ss_pred -----------------------------------------------------ceEEEEecC-CCCEEEEecCCCeEEEE
Q 041206 294 -----------------------------------------------------SLFGMLDAE-AKPVLFSSGKDSAIRLY 319 (371)
Q Consensus 294 -----------------------------------------------------~~~~~~~~~-~~~~l~~~~~d~~i~iw 319 (371)
....+...+ ++++++++ ++.|.+|
T Consensus 203 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~ 280 (349)
T 1jmx_B 203 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKY 280 (349)
T ss_dssp CCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEE
T ss_pred CCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEE
Confidence 001112224 55577777 8899999
Q ss_pred EcCCcceeeeecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccccee
Q 041206 320 ELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 320 d~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~ 367 (371)
|+.+++.+..+.....+.+++|+|++ .|++++.++.|++||+.+.+..
T Consensus 281 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 281 DLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp ETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred ECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEecccccee
Confidence 99999888777666678899999999 7777888999999999876654
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.84 E-value=9.7e-19 Score=168.51 Aligned_cols=320 Identities=9% Similarity=0.000 Sum_probs=193.5
Q ss_pred CCcccCCCCceeeccCc------ccccceeEEEEEeecc---ceeeeeeeecceeeccceeeC-----CccceEEEEEec
Q 041206 11 DEHKHSEGGETMMSDDD------DLMKGRAEEREEMFGF---GLAAMAIRVCNNWISDSCVYG-----DKCRFLHSWVHS 76 (371)
Q Consensus 11 ~~~~~sp~g~~l~~~~~------d~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~ 76 (371)
..-.|||||++++++.+ |...++....+..|.. .|..++++|.+.++....... ..+..+++|+.
T Consensus 20 ~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~- 98 (723)
T 1xfd_A 20 PEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKI- 98 (723)
T ss_dssp CCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEES-
T ss_pred cccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEEC-
Confidence 34569999998877432 2445777777766654 489999999887654322111 12378889982
Q ss_pred cCCCCccCCce--eeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC-e--------------
Q 041206 77 VDGDNTTNSLA--TLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGA-E-------------- 139 (371)
Q Consensus 77 ~~~~~~~~~~~--~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~-------------- 139 (371)
.+++ .+....+|...+..++|||||++||.++. +.|++||+.+++.......+. .
T Consensus 99 -------~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee 170 (723)
T 1xfd_A 99 -------PHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEE 170 (723)
T ss_dssp -------SSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHT
T ss_pred -------CCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEE
Confidence 2222 23334456667999999999999999986 789999999988766554321 1
Q ss_pred ------eEEEeecCCEEEEec--CCcEEEEEeCCC------CeeEEEEeCC-EEEEEeCCCeEEEEeccCCCCcceeeEE
Q 041206 140 ------IGCLISEGSWVFLGL--PNAVKSWRVNAA------SVNALVVNND-LLFAGSEGGVISVWKGTFVANPFKQVAS 204 (371)
Q Consensus 140 ------~~~~~~~~~~~~~~~--~~~i~~~~~~~~------~v~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 204 (371)
-..+.++++.++... +..+.+|++... .+..+.+.++ .. ..+..|++||+.++ +....
T Consensus 171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~----~~~~~ 243 (723)
T 1xfd_A 171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSE---NPSISLHVIGLNGP----THDLE 243 (723)
T ss_dssp TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSC---CCEEEEEEEESSSS----CCCEE
T ss_pred eccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCC---CCeeEEEEEECCCC----ceeEE
Confidence 123345666665532 345556655321 2444444332 10 12348999999887 33344
Q ss_pred EecC------c-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEeec-CCCcEE----EEEEc--CCeE
Q 041206 205 IRAP------L-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKG-HSDTVT----SLLFW--DEYL 269 (371)
Q Consensus 205 ~~~~------~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~----~~~~~--~~~l 269 (371)
+..+ . .+.+++|+|||+ +++.... +..+..|++||+.++++...+.. +...+. .++|+ ++.|
T Consensus 244 l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~---~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 320 (723)
T 1xfd_A 244 MMPPDDPRMREYYITMVKWATSTKVAVTWLNR---AQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF 320 (723)
T ss_dssp CCCCCCGGGSSEEEEEEEESSSSEEEEEEEET---TSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred eeCCccCCCccceeEEEEEeCCCeEEEEEEcC---CCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeE
Confidence 4433 5 889999999998 4343000 02346899999999987766543 333333 77888 5655
Q ss_pred EE--EeCCC------cEEEEE-ccCCCC--ccee----cceEE-EEecCCCCEEEE-ecCC--CeEEEEEcCCcc--eee
Q 041206 270 FS--SSLDE------TIKIWL-YTHTKN--NAEL----SSLFG-MLDAEAKPVLFS-SGKD--SAIRLYELPSFK--LRA 328 (371)
Q Consensus 270 ~s--~~~dg------~i~iwd-~~~~~~--~~~~----~~~~~-~~~~~~~~~l~~-~~~d--~~i~iwd~~~~~--~~~ 328 (371)
+. +..++ .|.+|| ...... ...+ ..+.. ..++++++.|+. +..+ +.+++|++.... ...
T Consensus 321 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 400 (723)
T 1xfd_A 321 FFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQ 400 (723)
T ss_dssp EEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCB
T ss_pred EEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcc
Confidence 54 45666 466677 333320 1111 11222 234444446654 4444 789999986532 233
Q ss_pred eec----CCceEEEEEeCCCC-eEEe
Q 041206 329 RIF----SRREVEVDQIGPAG-LFFP 349 (371)
Q Consensus 329 ~~~----~~~~v~~~~~s~~~-~l~~ 349 (371)
.+. +...+..++|+||| .|+.
T Consensus 401 ~l~~~~~~~~~~~~~~~spdg~~l~~ 426 (723)
T 1xfd_A 401 CLSCDLVENCTYFSASFSHSMDFFLL 426 (723)
T ss_dssp CSSTTSSSSCCCCEEEECTTSSEEEE
T ss_pred eecccccCCCCeEEEEECCCCCEEEE
Confidence 333 35568899999999 4443
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=9.5e-18 Score=147.10 Aligned_cols=262 Identities=12% Similarity=0.116 Sum_probs=165.8
Q ss_pred ccceEEEEEeccCCCCccCCceeeE-eeeCccCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceEEEEeCCCeeE
Q 041206 66 KCRFLHSWVHSVDGDNTTNSLATLM-KLNGHKKAVTNVGLPSGSNKLYSGSR---DGRVSVWDRDSGRCVNVITNGAEIG 141 (371)
Q Consensus 66 ~~~~i~~~~~~~~~~~~~~~~~~~~-~l~~h~~~V~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~ 141 (371)
..+-+.+|.+.. .+++... ....+...+..++|+|+++ |++++. ++.|++|++.+++......
T Consensus 14 ~~~~i~v~~~d~------~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~------ 80 (347)
T 3hfq_A 14 TSQGIYQGTLDT------TAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNT------ 80 (347)
T ss_dssp SCCEEEEEEEET------TTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEE------
T ss_pred CCCCEEEEEEcC------CCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeee------
Confidence 345566666422 2333322 3344667788999999999 665554 6899999997765322111
Q ss_pred EEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEe-CCCeEEEEeccCCCCcceeeEEEecC---------c
Q 041206 142 CLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGS-EGGVISVWKGTFVANPFKQVASIRAP---------L 209 (371)
Q Consensus 142 ~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~---------~ 209 (371)
...+...+..++++|+ +|++++ .++.|.+|++..... ...+..+... .
T Consensus 81 -------------------~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~-~~~~~~~~~~~~~p~~~~~~ 140 (347)
T 3hfq_A 81 -------------------VVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGA-LTLTDTVQHSGHGPRPEQDG 140 (347)
T ss_dssp -------------------EEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSC-EEEEEEEECCCCCSSTTCSS
T ss_pred -------------------eecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCC-eeecceeecCCCCCCccccC
Confidence 0012335788999988 677777 679999999964211 1333333321 1
Q ss_pred -ceEEEEecCCce-eEecccceeeeeCCCeEEEEECC-CceEE--EEeecC-CCcEEEEEEc--CCeEEE-EeCCCcEEE
Q 041206 210 -WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLD-NLECV--QTLKGH-SDTVTSLLFW--DEYLFS-SSLDETIKI 280 (371)
Q Consensus 210 -~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~-~~~~~--~~~~~~-~~~v~~~~~~--~~~l~s-~~~dg~i~i 280 (371)
.+.+++|+|+++ +++. ..++.|++||+. +++.. ..+..+ ......++|+ ++++++ ...++.+.+
T Consensus 141 ~~~~~~~~spdg~l~v~~-------~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v 213 (347)
T 3hfq_A 141 SHIHYTDLTPDNRLAVID-------LGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIAS 213 (347)
T ss_dssp CCEEEEEECTTSCEEEEE-------TTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCceEEEECCCCcEEEEe-------CCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEE
Confidence 488999999998 4444 568899999998 55433 222332 2367789998 565554 567889999
Q ss_pred EEccCCCCc----cee----------cceEEEEecCCCCEE-EEecCCCeEEEEEcCCc---ceeeeecC-CceEEEEEe
Q 041206 281 WLYTHTKNN----AEL----------SSLFGMLDAEAKPVL-FSSGKDSAIRLYELPSF---KLRARIFS-RREVEVDQI 341 (371)
Q Consensus 281 wd~~~~~~~----~~~----------~~~~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~---~~~~~~~~-~~~v~~~~~ 341 (371)
|++...... ... .....+.+.+++++| ++...++.|.+|++... +.+..+.. ...+..++|
T Consensus 214 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~ 293 (347)
T 3hfq_A 214 LKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDL 293 (347)
T ss_dssp EEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEE
T ss_pred EEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEE
Confidence 998742110 000 123334455555565 56667899999999732 34444433 456889999
Q ss_pred CCCC-eEEeeC-CCCcEEEEEcc--cccee
Q 041206 342 GPAG-LFFPGD-ASGSVGVWKWL--LAEQQ 367 (371)
Q Consensus 342 s~~~-~l~~~~-~dg~i~iw~~~--~~~~~ 367 (371)
+||| +|++++ .++.|.+|++. ++++.
T Consensus 294 spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 294 DPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 9999 666665 45899999654 45444
No 147
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=1.8e-18 Score=162.41 Aligned_cols=246 Identities=9% Similarity=-0.021 Sum_probs=170.7
Q ss_pred cCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceEEEEeCC-CeeEEEeec-CCEEEEec----CCcEEEEEeCC---
Q 041206 96 KKAVTNVGLPSGSNKLYSGSR-DGRVSVWDRDSGRCVNVITNG-AEIGCLISE-GSWVFLGL----PNAVKSWRVNA--- 165 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~----~~~i~~~~~~~--- 165 (371)
..+|++++|+|||++||+++. ||+++||++++++..+....+ ..+....+. +.+++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~ 100 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRP 100 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTST
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCC
Confidence 568999999999999999887 999999999777665544444 356665543 34555433 35566665543
Q ss_pred -C--------CeeEEEEe--CC-EEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eEecccceeee
Q 041206 166 -A--------SVNALVVN--ND-LLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFE 232 (371)
Q Consensus 166 -~--------~v~~~~~~--~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~ 232 (371)
. .+...+|+ ++ .+++...++.+.+||+.++ +.......+ . .+++|+|||+ ++++
T Consensus 101 g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g----~~~~l~~~~-~-~~~~~spDG~~la~~------- 167 (582)
T 3o4h_A 101 GEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGG----GLRELARLP-G-FGFVSDIRGDLIAGL------- 167 (582)
T ss_dssp TCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETT----EEEEEEEES-S-CEEEEEEETTEEEEE-------
T ss_pred CccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCC----cEEEeecCC-C-ceEEECCCCCEEEEE-------
Confidence 1 23334554 44 4445555555669999887 444333332 3 7899999997 6656
Q ss_pred eCC----CeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCC--cEEEEEccCCCCcceec----ceEEE--
Q 041206 233 FCG----HTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDE--TIKIWLYTHTKNNAELS----SLFGM-- 298 (371)
Q Consensus 233 ~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg--~i~iwd~~~~~~~~~~~----~~~~~-- 298 (371)
+.+ +.|++||+.+++.. .+..|...+..++|+ ++.|+++..++ .|++||+...+.. ... .+...
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~ 245 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRP 245 (582)
T ss_dssp EEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCC
T ss_pred EEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhh
Confidence 555 78999999988764 667888899999999 67888888888 8999998765532 111 11111
Q ss_pred -------EecCCCCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCCCCc---EEEEEcc
Q 041206 299 -------LDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDASGS---VGVWKWL 362 (371)
Q Consensus 299 -------~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~---i~iw~~~ 362 (371)
+++++ .++++++.++.+++|++ ++... .....+.+++|+ ++ .+++++.+.. +.+|+..
T Consensus 246 ~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 246 TAITWLGYLPDG-RLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp SEEEEEEECTTS-CEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred ccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 44554 79999999999999999 55544 234788999999 88 7777776643 5555554
No 148
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.82 E-value=2.5e-18 Score=155.10 Aligned_cols=158 Identities=14% Similarity=0.075 Sum_probs=121.0
Q ss_pred CccCCeEEEEEcCCCCEEE----EEeCCCcEEEEECCCC--------ceEEEEeCCCeeEEEeecCCEEEEecCCcEEEE
Q 041206 94 GHKKAVTNVGLPSGSNKLY----SGSRDGRVSVWDRDSG--------RCVNVITNGAEIGCLISEGSWVFLGLPNAVKSW 161 (371)
Q Consensus 94 ~h~~~V~~~~~~~~~~~l~----s~~~dg~v~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 161 (371)
.|...|++++|+|++++|+ +|+.|++|+|||+.++ +.+..+ +.+
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~------------------------~~~ 145 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYH------------------------KLL 145 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEE------------------------ECC
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeee------------------------ecc
Confidence 3677899999999999999 8899999999998754 111111 111
Q ss_pred EeCCCCeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCC
Q 041206 162 RVNAASVNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGH 236 (371)
Q Consensus 162 ~~~~~~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg 236 (371)
..|...|.+++|+|+ +|++++.||.|++||++++ ........|. .|.+++|+|+++ |++| +.||
T Consensus 146 ~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~----~~~~~~~~~~~~v~~v~wspdg~~lasg-------s~dg 214 (434)
T 2oit_A 146 KDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET----VKVCATLPSTVAVTSVCWSPKGKQLAVG-------KQNG 214 (434)
T ss_dssp CSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS----EEEEEEECGGGCEEEEEECTTSSCEEEE-------ETTS
T ss_pred CCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC----cceeeccCCCCceeEEEEcCCCCEEEEE-------cCCC
Confidence 225567999999986 8999999999999999987 5666667777 999999999996 8999 9999
Q ss_pred eEEEEECCCceEEEEeecC-------CCcEEEEEEc-CC-eEEE-EeCCC------cEEEEEccCCC
Q 041206 237 TTRTWNLDNLECVQTLKGH-------SDTVTSLLFW-DE-YLFS-SSLDE------TIKIWLYTHTK 287 (371)
Q Consensus 237 ~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~-~~-~l~s-~~~dg------~i~iwd~~~~~ 287 (371)
.|++||++ ++....+..| ...|.+++|+ +. ++++ ...+| .+++|+++..+
T Consensus 215 ~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 215 TVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp CEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred cEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCC
Confidence 99999998 5555555443 2388999998 33 3332 33443 38999987653
No 149
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=1.5e-16 Score=140.19 Aligned_cols=264 Identities=11% Similarity=0.108 Sum_probs=163.9
Q ss_pred CccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCC----CcEEEEECCC--CceE--EEEeC
Q 041206 65 DKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRD----GRVSVWDRDS--GRCV--NVITN 136 (371)
Q Consensus 65 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~d----g~v~iwd~~~--~~~~--~~~~~ 136 (371)
+.++-|++|.+.+. ....+.+..+ |...+..++|+|++++|++++.+ +.|.+|++.. ++.. .....
T Consensus 24 ~~~~~i~~~~~d~~----~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~ 97 (361)
T 3scy_A 24 GNSKGIYTFRFNEE----TGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKT 97 (361)
T ss_dssp SSCCEEEEEEEETT----TCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEEC
T ss_pred CCCCCEEEEEEeCC----CCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEecc
Confidence 44567888875321 1122333333 77888899999999999999886 7999998865 4332 22221
Q ss_pred CCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCCEEEEEe-CCCeEEEEeccCCCCcceeeEEEe--c------
Q 041206 137 GAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNNDLLFAGS-EGGVISVWKGTFVANPFKQVASIR--A------ 207 (371)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~--~------ 207 (371)
+......++++.+++++++ .++.|.+|++.............. +
T Consensus 98 ---------------------------~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~ 150 (361)
T 3scy_A 98 ---------------------------MGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKE 150 (361)
T ss_dssp ---------------------------SSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTT
T ss_pred ---------------------------CCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcc
Confidence 1123556666444555555 578999999875422111111111 1
Q ss_pred --Cc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCce-------E------EEEeecCCCcEEEEEEc--CCe
Q 041206 208 --PL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLE-------C------VQTLKGHSDTVTSLLFW--DEY 268 (371)
Q Consensus 208 --~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~-------~------~~~~~~~~~~v~~~~~~--~~~ 268 (371)
+. .+.+++|+|+++ ++++ ...++.|.+|++.... . ......+......++|+ +++
T Consensus 151 ~~~~~~~~~~~~spdg~~l~~~------~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~ 224 (361)
T 3scy_A 151 RQTMPHLHCVRITPDGKYLLAD------DLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKF 224 (361)
T ss_dssp TCSSCCEEEEEECTTSSEEEEE------ETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred ccCCCcceEEEECCCCCEEEEE------eCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCE
Confidence 12 458899999996 5444 0458899999887533 1 11122344567889998 566
Q ss_pred EEEEe-CCCcEEEEEccCCCC---------cceecceEEEEecCCCCEEEEecC--CCeEEEEEcC--Ccc--eeeeecC
Q 041206 269 LFSSS-LDETIKIWLYTHTKN---------NAELSSLFGMLDAEAKPVLFSSGK--DSAIRLYELP--SFK--LRARIFS 332 (371)
Q Consensus 269 l~s~~-~dg~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~--d~~i~iwd~~--~~~--~~~~~~~ 332 (371)
+++++ .++.|.+|++..... .........+.+.+++++|+++.. ++.|.+|++. +++ .+..+..
T Consensus 225 l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~ 304 (361)
T 3scy_A 225 AYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT 304 (361)
T ss_dssp EEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC
T ss_pred EEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC
Confidence 76666 689999999874321 000111234455556667755544 5899999996 333 3434434
Q ss_pred CceEEEEEeCCCC-eEEeeC-CCCcEEEEEcc--cccee
Q 041206 333 RREVEVDQIGPAG-LFFPGD-ASGSVGVWKWL--LAEQQ 367 (371)
Q Consensus 333 ~~~v~~~~~s~~~-~l~~~~-~dg~i~iw~~~--~~~~~ 367 (371)
...+..++|+|+| +|++++ .++.|.+|++. ++++.
T Consensus 305 g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~ 343 (361)
T 3scy_A 305 GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLT 343 (361)
T ss_dssp SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEe
Confidence 4577899999999 666665 77999997665 44443
No 150
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.81 E-value=2.4e-17 Score=158.44 Aligned_cols=291 Identities=9% Similarity=-0.032 Sum_probs=185.7
Q ss_pred cceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 041206 43 FGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSV 122 (371)
Q Consensus 43 ~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~i 122 (371)
..|.+++++|.+.++.. .++.+++|+ . .+++ ...+..|...+.+++|+|||++|+++ .|+.|++
T Consensus 82 ~~v~~~~~spd~~~~~~------~~~~i~~~d-------~-~~~~-~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v 145 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLF------TQGGLVGFD-------M-LARK-VTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYI 145 (706)
T ss_dssp CCCEEEEETTTTEEEEE------ETTEEEEEE-------T-TTTE-EEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEE
T ss_pred cCceeEEECCCCeEEEE------ECCEEEEEE-------C-CCCc-eEEccCCcccccCCcCCCCCCEEEEE-ECCeEEE
Confidence 45888899998444331 237899999 2 3333 34556677889999999999999995 6799999
Q ss_pred EECCC-----CceEEEEeCCCe-----------------eEEEeecCCEEEEec--------------------------
Q 041206 123 WDRDS-----GRCVNVITNGAE-----------------IGCLISEGSWVFLGL-------------------------- 154 (371)
Q Consensus 123 wd~~~-----~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~-------------------------- 154 (371)
||+.+ ++.......+.. -..+.+++++++...
T Consensus 146 ~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y 225 (706)
T 2z3z_A 146 ARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYY 225 (706)
T ss_dssp EECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECC
T ss_pred EecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeC
Confidence 99998 876654443322 223456788877643
Q ss_pred --------CCcEEEEEeCCC-------------CeeEEEEeCC--EEEEEeCCC-----eEEEEeccCCCCcceeeEEEe
Q 041206 155 --------PNAVKSWRVNAA-------------SVNALVVNND--LLFAGSEGG-----VISVWKGTFVANPFKQVASIR 206 (371)
Q Consensus 155 --------~~~i~~~~~~~~-------------~v~~~~~~~~--~l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~ 206 (371)
+..|.+||+.++ .+.+++|+|+ .|++++.++ .|++||+.++ +....+.
T Consensus 226 ~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g----~~~~~~~ 301 (706)
T 2z3z_A 226 PMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG----RFVRTLF 301 (706)
T ss_dssp CBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC----CEEEEEE
T ss_pred CCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC----ceeeEEE
Confidence 357889998655 3678999998 788777665 8999999886 2232222
Q ss_pred --cCc----ceEEEEecC--Cce-eEecccceeeeeCCCeEEEEECC-CceEEEEeecCCCcEEE-EEEc--CCeEEEE-
Q 041206 207 --APL----WFCSLSSSN--DTR-WNSKEEAAVFEFCGHTTRTWNLD-NLECVQTLKGHSDTVTS-LLFW--DEYLFSS- 272 (371)
Q Consensus 207 --~~~----~v~~~~~~~--~~~-l~~~~~~~~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~-~~~~--~~~l~s~- 272 (371)
.+. .+.+++|+| |++ ++++ ..++.+++|++. +++.+..+..|...+.. ++|+ ++.|+.+
T Consensus 302 ~~~~~~~~~~~~~~~~sp~~dg~~l~~~-------~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~ 374 (706)
T 2z3z_A 302 VETDKHYVEPLHPLTFLPGSNNQFIWQS-------RRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFES 374 (706)
T ss_dssp EEECSSCCCCCSCCEECTTCSSEEEEEE-------CTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEE
T ss_pred EccCCCeECccCCceeecCCCCEEEEEE-------ccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEe
Confidence 111 246789999 997 6677 788989999876 66777788888888877 7898 4556544
Q ss_pred eCCC----cEEEEEccCCCCc--ceecceEEEEecCCCCEEEEecC-C---CeEEEEEcCCcceeeeecCCceEEEEEeC
Q 041206 273 SLDE----TIKIWLYTHTKNN--AELSSLFGMLDAEAKPVLFSSGK-D---SAIRLYELPSFKLRARIFSRREVEVDQIG 342 (371)
Q Consensus 273 ~~dg----~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~-d---~~i~iwd~~~~~~~~~~~~~~~v~~~~~s 342 (371)
+.++ .|..||+...... .....+..+.+++++++++.... + +.|++||+.+++ ...+.+..++....+.
T Consensus 375 ~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~~~~~~~~~~~~~ 453 (706)
T 2z3z_A 375 TEASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLLEAKNPDTGYAMP 453 (706)
T ss_dssp SSSCTTCBEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEEECC------CCC
T ss_pred cCCCCceEEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe-EeeccccchhhhcCCC
Confidence 4444 5666665543321 11123344455555556665533 3 569999998876 3333344445444444
Q ss_pred CCCeEEeeCCCC--cEEEEEc
Q 041206 343 PAGLFFPGDASG--SVGVWKW 361 (371)
Q Consensus 343 ~~~~l~~~~~dg--~i~iw~~ 361 (371)
+...+..-..|| .+..|-+
T Consensus 454 ~~~~~~~~~~~g~~~~~~~~~ 474 (706)
T 2z3z_A 454 EIRTGTIMAADGQTPLYYKLT 474 (706)
T ss_dssp CEEEEEEECTTSSSEEEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEEEE
Confidence 333232333444 5555544
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.81 E-value=1.4e-18 Score=167.24 Aligned_cols=294 Identities=13% Similarity=0.082 Sum_probs=189.9
Q ss_pred eeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccC---CeEEEEEcCCCCEEEEEeC-------
Q 041206 47 AMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKK---AVTNVGLPSGSNKLYSGSR------- 116 (371)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~---~V~~~~~~~~~~~l~s~~~------- 116 (371)
.++++|...++. .+.++.+++|+ ..+++....+.+|.. .|.+++|||||++|++++.
T Consensus 20 ~~~~s~dg~~~~-----~~~d~~i~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~ 86 (719)
T 1z68_A 20 FPNWISGQEYLH-----QSADNNIVLYN--------IETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRY 86 (719)
T ss_dssp CCEESSSSEEEE-----ECTTSCEEEEE--------SSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSS
T ss_pred ccEECCCCeEEE-----EcCCCCEEEEE--------cCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEe
Confidence 345566554332 23467899999 345566666666654 4999999999999999876
Q ss_pred --CCcEEEEECCCCceE--EEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCC------------e------------
Q 041206 117 --DGRVSVWDRDSGRCV--NVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAAS------------V------------ 168 (371)
Q Consensus 117 --dg~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------v------------ 168 (371)
++.|++||+.+++.+ ..+........++++++.++...++.|++|++.++. +
T Consensus 87 s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee 166 (719)
T 1z68_A 87 SYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEE 166 (719)
T ss_dssp CEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHH
T ss_pred ecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeee
Confidence 789999999998763 222222223455678999988889999999986642 1
Q ss_pred -----eEEEEeCC--EEEEEeCCC----------------------------------eEEEEeccCCCCcceee-----
Q 041206 169 -----NALVVNND--LLFAGSEGG----------------------------------VISVWKGTFVANPFKQV----- 202 (371)
Q Consensus 169 -----~~~~~~~~--~l~~~~~dg----------------------------------~v~iwd~~~~~~~~~~~----- 202 (371)
.+++|+|+ .|++++.|. .|++||+.++ +..
T Consensus 167 ~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~----~~~~~~~~ 242 (719)
T 1z68_A 167 MLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP----AYVGPQEV 242 (719)
T ss_dssp TTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH----HHHCCEEC
T ss_pred cccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC----CccceeEc
Confidence 37999998 787776542 7889999876 321
Q ss_pred ---EEEecCc-ceEEEEecCCcee-EecccceeeeeCC----CeEEEEE----CCCceEEEEe----ecCCCcEE-----
Q 041206 203 ---ASIRAPL-WFCSLSSSNDTRW-NSKEEAAVFEFCG----HTTRTWN----LDNLECVQTL----KGHSDTVT----- 260 (371)
Q Consensus 203 ---~~~~~~~-~v~~~~~~~~~~l-~~~~~~~~~~~~d----g~i~iwd----~~~~~~~~~~----~~~~~~v~----- 260 (371)
..+..+. .+.+++|+||+++ ++. ... ..|.+|| +.++++...+ ..|...+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~SpD~~~~~~~-------~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 315 (719)
T 1z68_A 243 PVPAMIASSDYYFSWLTWVTDERVCLQW-------LKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVS 315 (719)
T ss_dssp CCCHHHHTSCEEEEEEEESSSSEEEEEE-------EESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCC
T ss_pred cCCccCCCCcceEEEeEEeCCCeEEEEE-------eccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCC
Confidence 1223466 8999999999874 443 222 3588999 8888776655 46777666
Q ss_pred EEEEc--CCeEE--EEeCCCc--EEEEEccCCCCcce---ecceEE-EEecCCCCEEEEecC----CCeEEEEEcCC--c
Q 041206 261 SLLFW--DEYLF--SSSLDET--IKIWLYTHTKNNAE---LSSLFG-MLDAEAKPVLFSSGK----DSAIRLYELPS--F 324 (371)
Q Consensus 261 ~~~~~--~~~l~--s~~~dg~--i~iwd~~~~~~~~~---~~~~~~-~~~~~~~~~l~~~~~----d~~i~iwd~~~--~ 324 (371)
.+.|+ ++.++ +...++. |.+||+...+.... ...+.. .++ +++.+++++.. ++..++|.+.. +
T Consensus 316 ~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g 394 (719)
T 1z68_A 316 TPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSY 394 (719)
T ss_dssp CCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSS
T ss_pred ccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCC
Confidence 78888 45443 4545664 56666554332100 011222 244 55544455544 47888888754 3
Q ss_pred c-eeeeec-----CCceEEEEEeCCCC--eEEeeCCC--CcEEEEEccccc
Q 041206 325 K-LRARIF-----SRREVEVDQIGPAG--LFFPGDAS--GSVGVWKWLLAE 365 (371)
Q Consensus 325 ~-~~~~~~-----~~~~v~~~~~s~~~--~l~~~~~d--g~i~iw~~~~~~ 365 (371)
. ....+. +...+..+.|+|++ ++++++.+ ..+.+|++.+++
T Consensus 395 ~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 395 PPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp SCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred CCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 2 122222 33567889999998 44444443 467888886655
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.80 E-value=4e-18 Score=153.76 Aligned_cols=209 Identities=11% Similarity=0.083 Sum_probs=140.6
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeC
Q 041206 96 KKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNN 175 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~ 175 (371)
...++.+++++++.++++++.|+ +++|+......... ............ .. ... .+...|.+++|++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~-~~~~~~~~~~~~---------~~-~~~-~~~~~v~~l~~sp 102 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNK-PGDDPNKIVDKV---------QG-LLV-PMKFPIHHLALSC 102 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCC-TTCCTTCEEECC---------CC-EEE-CCSSCEEEEEECT
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcc-cccCcccccccC---------cc-ccc-cCCCcccEEEEcC
Confidence 44689999999999999999988 99988542110000 000000000000 00 000 1244699999999
Q ss_pred C--EEE----EEeCCCeEEEEeccCCC-------CcceeeEEEecCc-ceEEEEecCC-ce-eEecccceeeeeCCCeEE
Q 041206 176 D--LLF----AGSEGGVISVWKGTFVA-------NPFKQVASIRAPL-WFCSLSSSND-TR-WNSKEEAAVFEFCGHTTR 239 (371)
Q Consensus 176 ~--~l~----~~~~dg~v~iwd~~~~~-------~~~~~~~~~~~~~-~v~~~~~~~~-~~-l~~~~~~~~~~~~dg~i~ 239 (371)
+ +|+ +++.|+.|++||+.+.. ........+.+|. .|.+++|+|+ +. ++++ +.||+|+
T Consensus 103 dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~-------s~Dg~v~ 175 (434)
T 2oit_A 103 DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC-------LADGSIA 175 (434)
T ss_dssp TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE-------ETTSCEE
T ss_pred CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE-------ECCCeEE
Confidence 8 777 78889999999987641 1112345566788 9999999997 44 8889 9999999
Q ss_pred EEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC------cc----eecceEEEEecCCCCEE
Q 041206 240 TWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN------NA----ELSSLFGMLDAEAKPVL 307 (371)
Q Consensus 240 iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~------~~----~~~~~~~~~~~~~~~~l 307 (371)
+||+++++.+....+|...|.+++|+ +++|++++.||+|++||.+.... .. +...+..+.+.++..++
T Consensus 176 iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l 255 (434)
T 2oit_A 176 VLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFA 255 (434)
T ss_dssp EEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEE
T ss_pred EEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEE
Confidence 99999988877777899999999999 78999999999999999872110 00 01133444444444344
Q ss_pred EE-ecCCC------eEEEEEcCCc
Q 041206 308 FS-SGKDS------AIRLYELPSF 324 (371)
Q Consensus 308 ~~-~~~d~------~i~iwd~~~~ 324 (371)
++ ...+| .+++|+++..
T Consensus 256 ~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 256 IVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEEccCCCccCCCCceEEEEeccC
Confidence 33 33343 3899999864
No 153
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.80 E-value=4e-17 Score=142.49 Aligned_cols=218 Identities=14% Similarity=0.159 Sum_probs=145.7
Q ss_pred EEEEEeCCCcEEEEECC-CCc--eEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCC
Q 041206 110 KLYSGSRDGRVSVWDRD-SGR--CVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEG 184 (371)
Q Consensus 110 ~l~s~~~dg~v~iwd~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~d 184 (371)
.+++++.|+.|++||+. +++ .+..+. +...+.+++|+|+ ++++++.+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~spdg~~l~~~~~~ 58 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVD----------------------------VPGQVQPMVVSPDKRYLYVGVRP 58 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEE----------------------------CSSCCCCEEECTTSSEEEEEETT
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEe----------------------------cCCCCceEEECCCCCEEEEeecC
Confidence 44455789999999985 332 233333 2234788999988 78888776
Q ss_pred -CeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eEecccceeeeeCCCeEEEEEC---CCceEEEEeecCCCcE
Q 041206 185 -GVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNL---DNLECVQTLKGHSDTV 259 (371)
Q Consensus 185 -g~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~---~~~~~~~~~~~~~~~v 259 (371)
+.|.+|++.......+.+..+..+..+..++|+|+++ ++++ +..++.|.+||+ .+.+.+..+..+ ..+
T Consensus 59 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~------~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~ 131 (343)
T 1ri6_A 59 EFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVG------SYNAGNVSVTRLEDGLPVGVVDVVEGL-DGC 131 (343)
T ss_dssp TTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEE------ETTTTEEEEEEEETTEEEEEEEEECCC-TTB
T ss_pred CCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEE------ecCCCeEEEEECCCCccccccccccCC-CCc
Confidence 9999999973222224445555444788999999996 5444 045899999999 444555555543 458
Q ss_pred EEEEEc--CCeEEEEe-CCCcEEEEEccC-CCCcc------e---ecceEEEEecCCCCEE-EEecCCCeEEEEEcCC--
Q 041206 260 TSLLFW--DEYLFSSS-LDETIKIWLYTH-TKNNA------E---LSSLFGMLDAEAKPVL-FSSGKDSAIRLYELPS-- 323 (371)
Q Consensus 260 ~~~~~~--~~~l~s~~-~dg~i~iwd~~~-~~~~~------~---~~~~~~~~~~~~~~~l-~~~~~d~~i~iwd~~~-- 323 (371)
.+++|+ ++++++++ .++.|++||+.. .+... . ......+.+.++++++ +++..++.|.+|++..
T Consensus 132 ~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~ 211 (343)
T 1ri6_A 132 HSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH 211 (343)
T ss_dssp CCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT
T ss_pred eEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCC
Confidence 889998 56777776 899999999876 32110 0 0123334455555555 5556889999999954
Q ss_pred cce--eeeec---C----CceEEEEEeCCCC-eEE-eeCCCCcEEEEEcc
Q 041206 324 FKL--RARIF---S----RREVEVDQIGPAG-LFF-PGDASGSVGVWKWL 362 (371)
Q Consensus 324 ~~~--~~~~~---~----~~~v~~~~~s~~~-~l~-~~~~dg~i~iw~~~ 362 (371)
++. ..... . ...+..++|+|++ .|+ ++..++.|++|++.
T Consensus 212 g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 212 GNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp SCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 332 21221 1 2357789999999 444 66689999999997
No 154
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.79 E-value=2.6e-17 Score=140.37 Aligned_cols=212 Identities=9% Similarity=-0.052 Sum_probs=147.5
Q ss_pred EEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEE
Q 041206 113 SGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVW 190 (371)
Q Consensus 113 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iw 190 (371)
+++.|++|++||+.+++......+ ...+.+++|+|+ ++++++ ++.|++|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~----------------------------~~~v~~~~~spdg~~l~~~~-~~~i~~~ 67 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQT----------------------------PELFEAPNWSPDGKYLLLNS-EGLLYRL 67 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEE----------------------------SSCCEEEEECTTSSEEEEEE-TTEEEEE
T ss_pred CCCcceeEEEEeCCCCceeeeccC----------------------------CcceEeeEECCCCCEEEEEc-CCeEEEE
Confidence 356789999999998887655442 335899999998 677765 8899999
Q ss_pred eccC-CCCcceeeEEEecCc--ceEEEEecCCce-eEecccceeeee--C--CCeEEEEECCCceEEEEeecCCCcEEEE
Q 041206 191 KGTF-VANPFKQVASIRAPL--WFCSLSSSNDTR-WNSKEEAAVFEF--C--GHTTRTWNLDNLECVQTLKGHSDTVTSL 262 (371)
Q Consensus 191 d~~~-~~~~~~~~~~~~~~~--~v~~~~~~~~~~-l~~~~~~~~~~~--~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 262 (371)
|+.+ + +.......+. .+.+++|+|+++ ++++ + . ...|..+++.+++ ...+..+ ..+..+
T Consensus 68 d~~~~~----~~~~~~~~~~~~~~~~~~~spdg~~l~~~-------~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~ 134 (297)
T 2ojh_A 68 SLAGDP----SPEKVDTGFATICNNDHGISPDGALYAIS-------DKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWH 134 (297)
T ss_dssp ESSSCC----SCEECCCTTCCCBCSCCEECTTSSEEEEE-------ECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEE
T ss_pred eCCCCC----CceEeccccccccccceEECCCCCEEEEE-------EeCCCCcceEEEEECCCCc-eEEeecC-CCccce
Confidence 9998 6 4444455553 789999999997 6666 5 2 3455666666555 3444433 348889
Q ss_pred EEc--CCeEE-EEeCCCcEEEEEccCCCC-----cceecceEEEEecCCCCEEEEec-CCCeEEEEEcC-Ccceeeeec-
Q 041206 263 LFW--DEYLF-SSSLDETIKIWLYTHTKN-----NAELSSLFGMLDAEAKPVLFSSG-KDSAIRLYELP-SFKLRARIF- 331 (371)
Q Consensus 263 ~~~--~~~l~-s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~-~~~~~~~~~- 331 (371)
+|+ +++|+ +++.++.+++|++..... ......+..+.+.+++++++.++ .++.+++|++. .......+.
T Consensus 135 ~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 214 (297)
T 2ojh_A 135 GWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD 214 (297)
T ss_dssp EECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC
T ss_pred EECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec
Confidence 998 55665 788899999999654321 11112344455555565666554 68899999886 344444444
Q ss_pred CCceEEEEEeCCCC-eEEeeCCC-----------CcEEEEEccccce
Q 041206 332 SRREVEVDQIGPAG-LFFPGDAS-----------GSVGVWKWLLAEQ 366 (371)
Q Consensus 332 ~~~~v~~~~~s~~~-~l~~~~~d-----------g~i~iw~~~~~~~ 366 (371)
+...+..++|+|++ +|++++.+ +.|++||+.+++.
T Consensus 215 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 215 SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 46788999999999 77777765 5699999987654
No 155
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.79 E-value=8.1e-17 Score=140.18 Aligned_cols=250 Identities=11% Similarity=0.044 Sum_probs=172.0
Q ss_pred cccceeEEEEEeecc--ceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeC-c----cCCeEE
Q 041206 29 LMKGRAEEREEMFGF--GLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNG-H----KKAVTN 101 (371)
Q Consensus 29 ~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~-h----~~~V~~ 101 (371)
...++.+..+..... .+..++++|.+..+. +....++.|..|+ ..+++.+..+.. + ...+.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~---v~~~~~~~v~~~d--------~~~~~~~~~~~~~~~~~~~~~~~~ 86 (337)
T 1pby_B 18 TEKMAVDKVITIADAGPTPMVPMVAPGGRIAY---ATVNKSESLVKID--------LVTGETLGRIDLSTPEERVKSLFG 86 (337)
T ss_dssp TTTTEEEEEEECTTCTTCCCCEEECTTSSEEE---EEETTTTEEEEEE--------TTTCCEEEEEECCBTTEEEECTTC
T ss_pred CCCCcEEEEEEcCCCCCCccceEEcCCCCEEE---EEeCCCCeEEEEE--------CCCCCeEeeEEcCCcccccccccc
Confidence 456777766653322 477888988764322 1134567899998 344566665653 2 236788
Q ss_pred EEEcCCCCEEEEEe------------CCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCee
Q 041206 102 VGLPSGSNKLYSGS------------RDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVN 169 (371)
Q Consensus 102 ~~~~~~~~~l~s~~------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~ 169 (371)
++|+|++++|++++ .++.|.+||+.+++.+..+.... .+.
T Consensus 87 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~----------------------------~~~ 138 (337)
T 1pby_B 87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR----------------------------QIT 138 (337)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS----------------------------SCC
T ss_pred eEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC----------------------------Ccc
Confidence 99999999999886 57999999999988877766432 367
Q ss_pred EEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eEecccceeeeeCCC----------
Q 041206 170 ALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFCGH---------- 236 (371)
Q Consensus 170 ~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg---------- 236 (371)
+++++|+ +++++ ++.|.+||+.++ +....+..+.....+.++|+++ ++... ..++
T Consensus 139 ~~~~s~dg~~l~~~--~~~i~~~d~~~~----~~~~~~~~~~~~~~~~~s~dg~~l~~~~------~~~~~~~~~~~~~~ 206 (337)
T 1pby_B 139 MLAWARDGSKLYGL--GRDLHVMDPEAG----TLVEDKPIQSWEAETYAQPDVLAVWNQH------ESSGVMATPFYTAR 206 (337)
T ss_dssp CEEECTTSSCEEEE--SSSEEEEETTTT----EEEEEECSTTTTTTTBCCCBCCCCCCCC------TTTTEEEEEEEEEB
T ss_pred eeEECCCCCEEEEe--CCeEEEEECCCC----cEeeeeeccccCCCceeCCCccEEeeec------cCCCceeeeeeccc
Confidence 7888887 56666 688999999987 6666665443112347889886 43330 2222
Q ss_pred -------------eEEEEECCCceEE-EEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCccee---cceEE
Q 041206 237 -------------TTRTWNLDNLECV-QTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAEL---SSLFG 297 (371)
Q Consensus 237 -------------~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~ 297 (371)
.|.+||+.+++.. ..+..+...+.+++|+ +++++++ ++.|.+||+...+....+ .....
T Consensus 207 ~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~ 284 (337)
T 1pby_B 207 KDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYS 284 (337)
T ss_dssp TTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCE
T ss_pred cccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceee
Confidence 5789999998764 3344566778899998 5677777 799999998765432211 12333
Q ss_pred EEecCCCCEEEEecCCCeEEEEEcCCcceeeeec
Q 041206 298 MLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF 331 (371)
Q Consensus 298 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 331 (371)
+.+.++++++++++.++.|++||+.+++.+..+.
T Consensus 285 ~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 285 VNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp EEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred EEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 4455555588888889999999999998877765
No 156
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.76 E-value=4.3e-15 Score=130.12 Aligned_cols=248 Identities=13% Similarity=0.133 Sum_probs=162.4
Q ss_pred eeccCcccccceeEE-EEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeE
Q 041206 22 MMSDDDDLMKGRAEE-REEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVT 100 (371)
Q Consensus 22 l~~~~~d~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 100 (371)
+.+-..|...+++.. ....+......++++|.+.+.. .. ..+.++.+++|+.. ....+.+..+..|...+.
T Consensus 18 i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~-~~-~~~~~~~v~~~~~~------~g~~~~~~~~~~~~~~p~ 89 (347)
T 3hfq_A 18 IYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYS-VD-KEDDEGGIAAWQID------GQTAHKLNTVVAPGTPPA 89 (347)
T ss_dssp EEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEE-EE-EETTEEEEEEEEEE------TTEEEEEEEEEEESCCCS
T ss_pred EEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEE-EE-ecCCCceEEEEEec------CCcEEEeeeeecCCCCCE
Confidence 333344445555543 3445667788889998776322 11 11346789999831 123345666677888899
Q ss_pred EEEEcCCCCEEEEEe-CCCcEEEEECC-CCc--eEEEEeCCC----------eeE--EEeecCCEEEEe-cCCcEEEEEe
Q 041206 101 NVGLPSGSNKLYSGS-RDGRVSVWDRD-SGR--CVNVITNGA----------EIG--CLISEGSWVFLG-LPNAVKSWRV 163 (371)
Q Consensus 101 ~~~~~~~~~~l~s~~-~dg~v~iwd~~-~~~--~~~~~~~~~----------~~~--~~~~~~~~~~~~-~~~~i~~~~~ 163 (371)
.++|+|++++|++++ .++.|.+|++. ++. .+..+.... .+. .+.++++++++. .++.+.+|++
T Consensus 90 ~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~ 169 (347)
T 3hfq_A 90 YVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNV 169 (347)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEE
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEE
Confidence 999999999999888 67999999996 333 333333211 133 334567744444 3678999999
Q ss_pred C-CC--------------CeeEEEEeCC--EEEE-EeCCCeEEEEeccCCCCcceeeEEEecCc-------ceEEEEecC
Q 041206 164 N-AA--------------SVNALVVNND--LLFA-GSEGGVISVWKGTFVANPFKQVASIRAPL-------WFCSLSSSN 218 (371)
Q Consensus 164 ~-~~--------------~v~~~~~~~~--~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-------~v~~~~~~~ 218 (371)
. ++ .+..++|+|+ ++++ ...++.|.+|++............+.... .+..++|+|
T Consensus 170 ~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp 249 (347)
T 3hfq_A 170 SDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH 249 (347)
T ss_dssp CTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred CCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence 8 33 3456789988 4555 55688999999885322222333333222 488899999
Q ss_pred Cce-e-EecccceeeeeCCCeEEEEECC---CceEEEEeecCCCcEEEEEEc--CCeEEEEeC-CCcEEEEEcc
Q 041206 219 DTR-W-NSKEEAAVFEFCGHTTRTWNLD---NLECVQTLKGHSDTVTSLLFW--DEYLFSSSL-DETIKIWLYT 284 (371)
Q Consensus 219 ~~~-l-~~~~~~~~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg~i~iwd~~ 284 (371)
||+ + ++. ..++.|.+||+. +.+.+..+..+...+..++|+ +++|++++. ++.|.+|++.
T Consensus 250 dG~~l~v~~-------~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 250 DGHFLYVSN-------RGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp TSCEEEEEE-------ETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEe-------CCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 997 5 455 668999999997 335566666666677888888 566766665 4788888654
No 157
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.76 E-value=9.6e-16 Score=136.32 Aligned_cols=270 Identities=12% Similarity=0.072 Sum_probs=173.5
Q ss_pred ccCCceeeEeeeCccCCeEE-----EEEcCCCCEEEEEeC-CC--cEEEEECCCCceEEEEeCCCee---EEEeecCCEE
Q 041206 82 TTNSLATLMKLNGHKKAVTN-----VGLPSGSNKLYSGSR-DG--RVSVWDRDSGRCVNVITNGAEI---GCLISEGSWV 150 (371)
Q Consensus 82 ~~~~~~~~~~l~~h~~~V~~-----~~~~~~~~~l~s~~~-dg--~v~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~ 150 (371)
...++..+..+..|...... .+|+|||++|+.++. +| .|.+||+.+++.......+... ..+.++++.+
T Consensus 16 ~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l 95 (388)
T 3pe7_A 16 DASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDAL 95 (388)
T ss_dssp CTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEE
T ss_pred cCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEE
Confidence 34556777888888877766 889999999999887 66 4888899998877665544322 2566778877
Q ss_pred EEe-cCCcEEEEEeCCCCeeEEE-------------EeCC--EEEE----------------------EeCCCeEEEEec
Q 041206 151 FLG-LPNAVKSWRVNAASVNALV-------------VNND--LLFA----------------------GSEGGVISVWKG 192 (371)
Q Consensus 151 ~~~-~~~~i~~~~~~~~~v~~~~-------------~~~~--~l~~----------------------~~~dg~v~iwd~ 192 (371)
+.. .+..+.+||+.++....+. ++++ .++. ...+..|.+||+
T Consensus 96 ~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 175 (388)
T 3pe7_A 96 FYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDL 175 (388)
T ss_dssp EEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEET
T ss_pred EEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEEC
Confidence 664 5678999999888544322 2444 3332 123467999999
Q ss_pred cCCCCcceeeEEEecCc-ceEEEEecC-Cce-eEecccceeeeeC------CCeEEEEECCCceEEEEeecCC--CcEEE
Q 041206 193 TFVANPFKQVASIRAPL-WFCSLSSSN-DTR-WNSKEEAAVFEFC------GHTTRTWNLDNLECVQTLKGHS--DTVTS 261 (371)
Q Consensus 193 ~~~~~~~~~~~~~~~~~-~v~~~~~~~-~~~-l~~~~~~~~~~~~------dg~i~iwd~~~~~~~~~~~~~~--~~v~~ 261 (371)
.++ +.. .+..+. .+..++|+| |++ ++.. .. ...|.++|+..++.. .+..+. ..+..
T Consensus 176 ~~g----~~~-~l~~~~~~~~~~~~sp~dg~~l~~~-------~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~ 242 (388)
T 3pe7_A 176 KTG----EST-VILQENQWLGHPIYRPYDDSTVAFC-------HEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTH 242 (388)
T ss_dssp TTC----CEE-EEEEESSCEEEEEEETTEEEEEEEE-------ECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEE
T ss_pred CCC----ceE-EeecCCccccccEECCCCCCEEEEE-------EecCCCCCcceEEEEeCCCCceE-EeeeCCCCccccc
Confidence 887 333 333444 789999999 986 5544 33 347888888765543 343343 35778
Q ss_pred EEEc--CCeEEEEeC-CC----cEEEEEccCCCCcce--ecc-------eE-EEEecCCCCEEEEe--------cCCCeE
Q 041206 262 LLFW--DEYLFSSSL-DE----TIKIWLYTHTKNNAE--LSS-------LF-GMLDAEAKPVLFSS--------GKDSAI 316 (371)
Q Consensus 262 ~~~~--~~~l~s~~~-dg----~i~iwd~~~~~~~~~--~~~-------~~-~~~~~~~~~~l~~~--------~~d~~i 316 (371)
..|+ ++.|+..+. ++ .|++||+...+.... ... .. ..+++++..++++. ..+..|
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i 322 (388)
T 3pe7_A 243 EFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFL 322 (388)
T ss_dssp EEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEE
T ss_pred ceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEE
Confidence 8898 566655443 22 399999887653211 101 00 02445555333332 456789
Q ss_pred EEEEcCCcceeeeecCCc-----------eEEEEEeCCCC-eEE-eeCCCCcEEEEEcccc
Q 041206 317 RLYELPSFKLRARIFSRR-----------EVEVDQIGPAG-LFF-PGDASGSVGVWKWLLA 364 (371)
Q Consensus 317 ~iwd~~~~~~~~~~~~~~-----------~v~~~~~s~~~-~l~-~~~~dg~i~iw~~~~~ 364 (371)
++||+.+++...-..+.. .+..++|+||| .|+ +...+|...+|.+...
T Consensus 323 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 323 YVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP 383 (388)
T ss_dssp EEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred EEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence 999999876543333333 47888999999 444 5556888888876543
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.74 E-value=1.2e-15 Score=134.80 Aligned_cols=234 Identities=10% Similarity=0.082 Sum_probs=152.8
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEE
Q 041206 95 HKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRD-SGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVV 173 (371)
Q Consensus 95 h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~ 173 (371)
+...+..++|+|++++|++++.+ .|.+|++. +++........ ..+.+.++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~--------------------------~~g~~~~~~~ 90 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP--------------------------IGGHPRANDA 90 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE--------------------------CCSSGGGGCT
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEee--------------------------cCCCCccEEE
Confidence 44568899999999999999988 89999997 77654432210 0011334566
Q ss_pred eCC--E--EEEEe-------------CCCeEEEEeccCCCCcceeeEEEe----cCc-ceEEEEecCCce-eEeccccee
Q 041206 174 NND--L--LFAGS-------------EGGVISVWKGTFVANPFKQVASIR----APL-WFCSLSSSNDTR-WNSKEEAAV 230 (371)
Q Consensus 174 ~~~--~--l~~~~-------------~dg~v~iwd~~~~~~~~~~~~~~~----~~~-~v~~~~~~~~~~-l~~~~~~~~ 230 (371)
+|+ + ++++. .+|.+.+|++.... +....+. .+. .+.+++|+|||+ ++++
T Consensus 91 spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~----- 162 (365)
T 1jof_A 91 DTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETG---KLEKNVQNYEYQENTGIHGMVFDPTETYLYSA----- 162 (365)
T ss_dssp TSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTC---CEEEEEEEEECCTTCCEEEEEECTTSSEEEEE-----
T ss_pred CCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCC---cCcceEeeEEeCCCCcceEEEECCCCCEEEEE-----
Confidence 665 2 23332 68899999997421 2222222 234 789999999996 5554
Q ss_pred eee-CCCeEEEEECC-CceEE--EEee--cCCCcEEEEEEc--CCeEEEEeC-CCcEEEEEccC--CCCc---cee----
Q 041206 231 FEF-CGHTTRTWNLD-NLECV--QTLK--GHSDTVTSLLFW--DEYLFSSSL-DETIKIWLYTH--TKNN---AEL---- 292 (371)
Q Consensus 231 ~~~-~dg~i~iwd~~-~~~~~--~~~~--~~~~~v~~~~~~--~~~l~s~~~-dg~i~iwd~~~--~~~~---~~~---- 292 (371)
. .++.|++||+. +++.. ..+. .|...+..++|+ ++++++++. ++.|.+|++.. .+.. ..+
T Consensus 163 --~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~ 240 (365)
T 1jof_A 163 --DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP 240 (365)
T ss_dssp --ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred --cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCC
Confidence 4 46899999998 67643 3343 245678999999 567777664 78999998653 2110 000
Q ss_pred ------c-------ceEEEE-ecCCCCEEEEecCC-C-----eEEEEEcC-Ccceeee---ec-CCceEEEEEeCC---C
Q 041206 293 ------S-------SLFGML-DAEAKPVLFSSGKD-S-----AIRLYELP-SFKLRAR---IF-SRREVEVDQIGP---A 344 (371)
Q Consensus 293 ------~-------~~~~~~-~~~~~~~l~~~~~d-~-----~i~iwd~~-~~~~~~~---~~-~~~~v~~~~~s~---~ 344 (371)
. ....+. +.+++++|+++..+ + .|.+|++. +++.... .. ....+..++|+| |
T Consensus 241 ~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~d 320 (365)
T 1jof_A 241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS 320 (365)
T ss_dssp TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC
T ss_pred CCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcC
Confidence 0 234445 66666677665532 2 89999996 5554321 22 234567889999 7
Q ss_pred C-eEEeeCC-CCcEEEEEccccc
Q 041206 345 G-LFFPGDA-SGSVGVWKWLLAE 365 (371)
Q Consensus 345 ~-~l~~~~~-dg~i~iw~~~~~~ 365 (371)
| +|++++. ++.|.+|++....
T Consensus 321 g~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 321 DEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp TTEEEEECSSSCEEEEEEEETTE
T ss_pred CCEEEEEEcCCCeEEEEEEchhh
Confidence 8 7777765 5899999997653
No 159
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.73 E-value=1.3e-14 Score=123.56 Aligned_cols=236 Identities=10% Similarity=0.148 Sum_probs=161.6
Q ss_pred eCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEE
Q 041206 93 NGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALV 172 (371)
Q Consensus 93 ~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~ 172 (371)
.+|-..+.+++++++++++++...++.|.+||.. ++.+..+...... ..+...+.+++
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~---------------------~~~~~~p~~i~ 83 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKR---------------------DSQLLYPNRVA 83 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSS---------------------TTCBSSEEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCC---------------------cccccCceEEE
Confidence 3566789999999999988888889999999976 6665555421100 00112477888
Q ss_pred Ee-CC-EEEEEeC--CCeEEEEeccCCCCcceeeEEEecCc--ceEEEEecCCcee-EecccceeeeeCCCeEEEEECCC
Q 041206 173 VN-ND-LLFAGSE--GGVISVWKGTFVANPFKQVASIRAPL--WFCSLSSSNDTRW-NSKEEAAVFEFCGHTTRTWNLDN 245 (371)
Q Consensus 173 ~~-~~-~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~l-~~~~~~~~~~~~dg~i~iwd~~~ 245 (371)
++ ++ .++++.. ++.|.+||. ++ +.+..+.... .+.++++++++++ ++. ..++.|++||..
T Consensus 84 ~~~~~g~l~v~~~~~~~~i~~~d~-~g----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~-------~~~~~i~~~~~~- 150 (286)
T 1q7f_A 84 VVRNSGDIIVTERSPTHQIQIYNQ-YG----QFVRKFGATILQHPRGVTVDNKGRIIVVE-------CKVMRVIIFDQN- 150 (286)
T ss_dssp EETTTTEEEEEECGGGCEEEEECT-TS----CEEEEECTTTCSCEEEEEECTTSCEEEEE-------TTTTEEEEECTT-
T ss_pred EEcCCCeEEEEcCCCCCEEEEECC-CC----cEEEEecCccCCCceEEEEeCCCCEEEEE-------CCCCEEEEEcCC-
Confidence 84 44 5555553 789999994 44 4555554333 7899999999974 454 567899999965
Q ss_pred ceEEEEee--cCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC-----cceecceEEEEecCCCCEEEEecCCC-e
Q 041206 246 LECVQTLK--GHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN-----NAELSSLFGMLDAEAKPVLFSSGKDS-A 315 (371)
Q Consensus 246 ~~~~~~~~--~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~d~-~ 315 (371)
++.+..+. .+...+..++++ ++++++...++.|++||...... .........+...++++++++...++ .
T Consensus 151 g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~ 230 (286)
T 1q7f_A 151 GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN 230 (286)
T ss_dssp SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE
T ss_pred CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEE
Confidence 56665654 345578899998 45666667789999999643211 11112344455555566778777775 9
Q ss_pred EEEEEcCCcceeeeecC---CceEEEEEeCCCC-eEEeeCCCCcEEEEEccccc
Q 041206 316 IRLYELPSFKLRARIFS---RREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 316 i~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~ 365 (371)
|.+||.. ++.+..+.. ...+.+++++|+| ++++ +.|+.|++|++....
T Consensus 231 i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 231 LTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp EEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred EEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 9999964 555555542 2347899999999 6666 569999999986543
No 160
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.73 E-value=3.1e-15 Score=131.65 Aligned_cols=257 Identities=13% Similarity=0.056 Sum_probs=172.5
Q ss_pred ccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCceEEEEe
Q 041206 66 KCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSR----------DGRVSVWDRDSGRCVNVIT 135 (371)
Q Consensus 66 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~ 135 (371)
.++.+..|+ ..+++.+.++..+..+ .++|+||+++|+++.. +++|.+||..+++.+.++.
T Consensus 29 ~d~~v~v~D--------~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~ 98 (361)
T 2oiz_A 29 TESRVHVYD--------YTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEIS 98 (361)
T ss_dssp GGCEEEEEE--------TTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEE
T ss_pred ccCeEEEEE--------CCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEE
Confidence 466888888 3556778888887766 8999999999999863 6789999999999888776
Q ss_pred CCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeC--CCeEEEEeccCCCCcceeeEE-EecCcc
Q 041206 136 NGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSE--GGVISVWKGTFVANPFKQVAS-IRAPLW 210 (371)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~--dg~v~iwd~~~~~~~~~~~~~-~~~~~~ 210 (371)
....-. ........++++|+ +|+++.. ++.|.+||+.+. +.+.. +... .
T Consensus 99 ~~~~~~---------------------~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~----~~~~~~i~~~-~ 152 (361)
T 2oiz_A 99 LPPKRV---------------------QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG----DYVEDVTAAA-G 152 (361)
T ss_dssp ECTTBC---------------------CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT----EEEEEEGGGT-T
T ss_pred cCcccc---------------------ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC----cEEEEEecCC-C
Confidence 321000 00113567888887 7777653 689999999987 66655 4432 2
Q ss_pred eEEEEecCCc--eeEecccceeeeeCCCeEEEEECCC-ceEEE------EeecCCCcEEEE-EEcCCeEEEEeCCCcEEE
Q 041206 211 FCSLSSSNDT--RWNSKEEAAVFEFCGHTTRTWNLDN-LECVQ------TLKGHSDTVTSL-LFWDEYLFSSSLDETIKI 280 (371)
Q Consensus 211 v~~~~~~~~~--~l~~~~~~~~~~~~dg~i~iwd~~~-~~~~~------~~~~~~~~v~~~-~~~~~~l~s~~~dg~i~i 280 (371)
...+.+.|++ .+++. +.||.+.+|+... ++... .+..+..++... .-.+..++..+.++.+.+
T Consensus 153 ~~~v~~~p~~~~~~~~~-------~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v 225 (361)
T 2oiz_A 153 CWSVIPQPNRPRSFMTI-------CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYS 225 (361)
T ss_dssp EEEEEECTTSSSEEEEE-------ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEE
T ss_pred cceeEEcCCCCeeEEEE-------CCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEE
Confidence 2235567766 37777 8899999999865 55442 122222222110 112456666778899999
Q ss_pred EEccCCCCcc--e--------------ecce-EEEEecCCCCEEEEecC-----------CCeEEEEEcCCcceeeeecC
Q 041206 281 WLYTHTKNNA--E--------------LSSL-FGMLDAEAKPVLFSSGK-----------DSAIRLYELPSFKLRARIFS 332 (371)
Q Consensus 281 wd~~~~~~~~--~--------------~~~~-~~~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~ 332 (371)
+|+....... . .... ...+.++++ .++++.. .+.|.+||+.+++.+..+..
T Consensus 226 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~-~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~ 304 (361)
T 2oiz_A 226 ADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASG-RMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG 304 (361)
T ss_dssp EECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTT-EEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC
T ss_pred EEecCCCceecccccccCccccccccccCCeeEEEEecCCC-eEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec
Confidence 9986432110 0 0000 012444445 4444322 35899999999999988886
Q ss_pred CceEEEEEeCCCC-eEEeeCCCCcEEEEEcccc--ceec
Q 041206 333 RREVEVDQIGPAG-LFFPGDASGSVGVWKWLLA--EQQK 368 (371)
Q Consensus 333 ~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~--~~~~ 368 (371)
.. +.+++|+||| +|++++. +.|.+||..++ +..+
T Consensus 305 ~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~ 341 (361)
T 2oiz_A 305 RD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLR 341 (361)
T ss_dssp TT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEE
T ss_pred CC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeE
Confidence 66 9999999999 7777776 99999999988 5543
No 161
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.73 E-value=3.7e-14 Score=124.85 Aligned_cols=287 Identities=11% Similarity=0.082 Sum_probs=168.0
Q ss_pred ccceeEEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCC
Q 041206 30 MKGRAEEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSN 109 (371)
Q Consensus 30 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~ 109 (371)
..+++......+......++++|.+.++......+...+.+.+|.+..+ ....+.+.....+......+++ +++
T Consensus 37 ~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~----~g~~~~~~~~~~~~~~p~~~~~--dg~ 110 (361)
T 3scy_A 37 ETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKE----KGTLHLLNTQKTMGADPCYLTT--NGK 110 (361)
T ss_dssp TTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETT----TTEEEEEEEEECSSSCEEEEEE--CSS
T ss_pred CCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCC----CCcEEEeeEeccCCCCcEEEEE--CCC
Confidence 3444433322367777888999987654423222224478888884321 0123445556666677888888 788
Q ss_pred EEEEEe-CCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEe-CCC
Q 041206 110 KLYSGS-RDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGS-EGG 185 (371)
Q Consensus 110 ~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~-~dg 185 (371)
+|++++ .++.|.+|++.....+..+.. . ....+. +.. . -..+...+.+++|+|+ ++++++ .++
T Consensus 111 ~l~~~~~~~~~v~~~~~~~~g~~~~~~~---~--~~~~g~----~~~-~---~~~~~~~~~~~~~spdg~~l~~~~~~~~ 177 (361)
T 3scy_A 111 NIVTANYSGGSITVFPIGQDGALLPASD---V--IEFKGS----GPD-K---ERQTMPHLHCVRITPDGKYLLADDLGTD 177 (361)
T ss_dssp EEEEEETTTTEEEEEEBCTTSCBCSCSE---E--EECCCC----CSC-T---TTCSSCCEEEEEECTTSSEEEEEETTTT
T ss_pred EEEEEECCCCEEEEEEeCCCCcCcccce---e--EEccCC----CCC-c---cccCCCcceEEEECCCCCEEEEEeCCCC
Confidence 877776 578999999975443221110 0 000000 000 0 0001123678999998 555555 478
Q ss_pred eEEEEeccCCCC----c-ceee---EEEe-cCc-ceEEEEecCCce-eEecccceeeee-CCCeEEEEECCCceE--EEE
Q 041206 186 VISVWKGTFVAN----P-FKQV---ASIR-APL-WFCSLSSSNDTR-WNSKEEAAVFEF-CGHTTRTWNLDNLEC--VQT 251 (371)
Q Consensus 186 ~v~iwd~~~~~~----~-~~~~---~~~~-~~~-~v~~~~~~~~~~-l~~~~~~~~~~~-~dg~i~iwd~~~~~~--~~~ 251 (371)
.|.+|++..... . .... .... ... ...+++|+||++ ++++ + .++.|.+||+.+++. +..
T Consensus 178 ~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~-------~~~~~~v~v~~~~~g~~~~~~~ 250 (361)
T 3scy_A 178 QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLI-------NEIGGTVIAFRYADGMLDEIQT 250 (361)
T ss_dssp EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEE-------ETTTCEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEE-------cCCCCeEEEEEecCCceEEeEE
Confidence 999999886532 1 1111 1222 223 788999999996 5555 4 689999999987754 333
Q ss_pred ee---cCCCcEEEEEEc--CCeEEEEeC--CCcEEEEEccCC--CC--ccee---cceEEEEecCCCCEEEEec-CCCeE
Q 041206 252 LK---GHSDTVTSLLFW--DEYLFSSSL--DETIKIWLYTHT--KN--NAEL---SSLFGMLDAEAKPVLFSSG-KDSAI 316 (371)
Q Consensus 252 ~~---~~~~~v~~~~~~--~~~l~s~~~--dg~i~iwd~~~~--~~--~~~~---~~~~~~~~~~~~~~l~~~~-~d~~i 316 (371)
+. .+......++|+ +++|+++.. ++.|.+|++... .. .... .....+.+.+++++|++++ .++.|
T Consensus 251 ~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v 330 (361)
T 3scy_A 251 VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVI 330 (361)
T ss_dssp EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEE
T ss_pred EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCE
Confidence 32 233456899998 667766655 489999998632 21 1111 1233344555555666665 67899
Q ss_pred EEEEc--CCcceeeeec--CCceEEEEEeC
Q 041206 317 RLYEL--PSFKLRARIF--SRREVEVDQIG 342 (371)
Q Consensus 317 ~iwd~--~~~~~~~~~~--~~~~v~~~~~s 342 (371)
.+|++ .++++..... +...+.|+.|.
T Consensus 331 ~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 331 QIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 99654 4665544322 34567888875
No 162
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.73 E-value=8.6e-15 Score=127.28 Aligned_cols=232 Identities=9% Similarity=0.008 Sum_probs=161.3
Q ss_pred cCCeEEEEEcCCCCEEEEEeCC------------------------CcEEEEECCCCceEEEEeCCCeeEEEeecCCEEE
Q 041206 96 KKAVTNVGLPSGSNKLYSGSRD------------------------GRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVF 151 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~l~s~~~d------------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (371)
-+.+.+++++|+|+++++.+.+ ++|.+||..+++.+..+...
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-------------- 88 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKN-------------- 88 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTT--------------
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCC--------------
Confidence 3679999999999999988877 46888888777776544321
Q ss_pred EecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEe---------cCc-ceEEEEecC-
Q 041206 152 LGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIR---------APL-WFCSLSSSN- 218 (371)
Q Consensus 152 ~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---------~~~-~v~~~~~~~- 218 (371)
+-.....++++++ ++++...++.|++||..... ..+..+. .+- ....++++|
T Consensus 89 ------------~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~---~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~ 153 (329)
T 3fvz_A 89 ------------LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE---GPLLILGRSMQPGSDQNHFCQPTDVAVEPS 153 (329)
T ss_dssp ------------TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSS---CCSEEESBTTBCCCSTTCCSSEEEEEECTT
T ss_pred ------------ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCe---EEEEEecccCCCCCCccccCCCcEEEEeCC
Confidence 1124778899887 66677778999999986541 1344442 223 688999999
Q ss_pred CceeEecccceeeee-CCCeEEEEECCCceEEEEeec----------CCCcEEEEEEc---CCeEEEEeCCCcEEEEEcc
Q 041206 219 DTRWNSKEEAAVFEF-CGHTTRTWNLDNLECVQTLKG----------HSDTVTSLLFW---DEYLFSSSLDETIKIWLYT 284 (371)
Q Consensus 219 ~~~l~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~----------~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~ 284 (371)
++.++.+ .+ .++.|++|| .+++.+..+.. +......++++ +.++++...++.|++||..
T Consensus 154 ~g~lyv~------d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~ 226 (329)
T 3fvz_A 154 TGAVFVS------DGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD 226 (329)
T ss_dssp TCCEEEE------ECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCeEEEE------eCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence 7775544 04 589999999 55777766642 22347899997 3466677788999999987
Q ss_pred CCCCccee------cceEEEEecCCCCEEEE-------ecCCCeEEEEEcCCcceeeeec----CCceEEEEEeCCCC-e
Q 041206 285 HTKNNAEL------SSLFGMLDAEAKPVLFS-------SGKDSAIRLYELPSFKLRARIF----SRREVEVDQIGPAG-L 346 (371)
Q Consensus 285 ~~~~~~~~------~~~~~~~~~~~~~~l~~-------~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~s~~~-~ 346 (371)
..+....+ .....+...+ +..+.+ ...+..|++||+.+++.+..+. +...+..++++|+| +
T Consensus 227 ~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~l 305 (329)
T 3fvz_A 227 TKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTV 305 (329)
T ss_dssp TCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEE
T ss_pred CCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCE
Confidence 43321111 1222333334 212222 2345589999999999888763 34568999999999 8
Q ss_pred EEeeCCCCcEEEEEcccc
Q 041206 347 FFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 347 l~~~~~dg~i~iw~~~~~ 364 (371)
+++...++.|++|++...
T Consensus 306 yvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 306 YIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EEEESSSCCEEEEEEEEC
T ss_pred EEEECCCCEEEEEeCCcc
Confidence 889999999999998754
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.72 E-value=3.1e-15 Score=130.80 Aligned_cols=227 Identities=10% Similarity=0.019 Sum_probs=152.0
Q ss_pred CCccceEEEEEeccCCCCccCCceeeEeeeCcc-CCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceEEEEeCCCeeE
Q 041206 64 GDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHK-KAVTNVGLPSGSNKLY-SGSRDGRVSVWDRDSGRCVNVITNGAEIG 141 (371)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 141 (371)
...++.|++|+ ..+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++.+..+.......
T Consensus 17 ~~~~~~v~~~d--------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~ 88 (349)
T 1jmx_B 17 TNYPNNLHVVD--------VASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG 88 (349)
T ss_dssp EETTTEEEEEE--------TTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT
T ss_pred eCCCCeEEEEE--------CCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccc
Confidence 34567899999 44567777777554 2578999999998665 55578999999999998877665321000
Q ss_pred EEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCC------------CeEEEEeccCCCCcceeeEEEec
Q 041206 142 CLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEG------------GVISVWKGTFVANPFKQVASIRA 207 (371)
Q Consensus 142 ~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~d------------g~v~iwd~~~~~~~~~~~~~~~~ 207 (371)
.....+.+++++|+ ++++++.+ +.|.+||+.++.. .+.+..+..
T Consensus 89 ---------------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~ 146 (349)
T 1jmx_B 89 ---------------------EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE-AKPVRTFPM 146 (349)
T ss_dssp ---------------------EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-BCCSEEEEC
T ss_pred ---------------------cccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc-cceeeeccC
Confidence 00012677888887 77777754 8999999987421 023334444
Q ss_pred CcceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEeecCC-------------------------------
Q 041206 208 PLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHS------------------------------- 256 (371)
Q Consensus 208 ~~~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~------------------------------- 256 (371)
+..+.+++|+|+++++++ +.+ |++||+.+++.+..+..+.
T Consensus 147 ~~~~~~~~~s~dg~l~~~-------~~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (349)
T 1jmx_B 147 PRQVYLMRAADDGSLYVA-------GPD--IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 217 (349)
T ss_dssp CSSCCCEEECTTSCEEEE-------SSS--EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE
T ss_pred CCcccceeECCCCcEEEc-------cCc--EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeee
Confidence 447889999999986555 443 9999999988777665332
Q ss_pred -------------------------------------CcEEEEEEc---CCeEEEEeCCCcEEEEEccCCCCccee---c
Q 041206 257 -------------------------------------DTVTSLLFW---DEYLFSSSLDETIKIWLYTHTKNNAEL---S 293 (371)
Q Consensus 257 -------------------------------------~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~---~ 293 (371)
..+.+++++ +++++++ ++.|.+||+...+....+ .
T Consensus 218 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~ 295 (349)
T 1jmx_B 218 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH 295 (349)
T ss_dssp EC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS
T ss_pred ecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC
Confidence 022344444 3466666 889999998765532211 1
Q ss_pred ceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec
Q 041206 294 SLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF 331 (371)
Q Consensus 294 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 331 (371)
....+.+.+++++|++++.++.|++||+.+++.+..+.
T Consensus 296 ~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 296 TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred CccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 22334444444466677888999999999988777664
No 164
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.71 E-value=9.8e-16 Score=143.85 Aligned_cols=252 Identities=10% Similarity=-0.019 Sum_probs=172.0
Q ss_pred ccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCcc-CCeEEEEEcCCCCEEEEEeC---C
Q 041206 42 GFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHK-KAVTNVGLPSGSNKLYSGSR---D 117 (371)
Q Consensus 42 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~~~~~~~~~~l~s~~~---d 117 (371)
...|.+++++|.+..+... +..++.+++|.. .+++. ..+..|. ..+..++|+|| +++++++. +
T Consensus 21 ~~~~~~~~~~~DG~~la~~---s~~~g~~~lw~~--------~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~ 87 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVV---GFSEGSVNAYLY--------DGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGA 87 (582)
T ss_dssp HSCEEEEEEEETTTEEEEE---EEETTEEEEEEE--------ETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTS
T ss_pred ccchheeecCCCCCeEEEE---EccCCceeEEEE--------cCCCc-EeeecccccccccccCCCC-eEEEEeccCCCC
Confidence 4457888888876654422 123667889982 33344 4455555 68999999999 78888775 4
Q ss_pred CcEEEEECCC---CceEEEEeC--CCeeEEEeecCC--EEEEecCCcEEEEEeCCCCe--------eEEEEeCC--EEEE
Q 041206 118 GRVSVWDRDS---GRCVNVITN--GAEIGCLISEGS--WVFLGLPNAVKSWRVNAASV--------NALVVNND--LLFA 180 (371)
Q Consensus 118 g~v~iwd~~~---~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~v--------~~~~~~~~--~l~~ 180 (371)
...++|.+.. +... .+.. ...+.++.++++ .++++.++.+.+||+.++.. .+++|+|+ ++++
T Consensus 88 ~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~ 166 (582)
T 3o4h_A 88 EQHALFKVNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAG 166 (582)
T ss_dssp CCEEEEEEETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEE
T ss_pred cceEEEEEeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEE
Confidence 5566665433 3222 3322 233456677765 33445666677999987733 56777777 7787
Q ss_pred EeCC----CeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCCC--eEEEEECCCceEEEEe
Q 041206 181 GSEG----GVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCGH--TTRTWNLDNLECVQTL 252 (371)
Q Consensus 181 ~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg--~i~iwd~~~~~~~~~~ 252 (371)
++.+ +.|++||+.++ + ...+..+. .+..++|+|||+ ++++ ..++ .|++||+.+++.. .+
T Consensus 167 ~~~~~~~~~~i~~~d~~~g----~-~~~l~~~~~~~~~~~~SpDG~~l~~~-------~~~~~~~i~~~d~~~~~~~-~~ 233 (582)
T 3o4h_A 167 LGFFGGGRVSLFTSNLSSG----G-LRVFDSGEGSFSSASISPGMKVTAGL-------ETAREARLVTVDPRDGSVE-DL 233 (582)
T ss_dssp EEEEETTEEEEEEEETTTC----C-CEEECCSSCEEEEEEECTTSCEEEEE-------ECSSCEEEEEECTTTCCEE-EC
T ss_pred EEEcCCCCeEEEEEcCCCC----C-ceEeecCCCccccceECCCCCEEEEc-------cCCCeeEEEEEcCCCCcEE-Ec
Confidence 7766 78999999887 3 33667777 899999999997 7766 7788 8999999998887 77
Q ss_pred ecCCCcEEEEE--------Ec--CCeEEEEeCCCcEEEEEccCCCCc-ceecceEEEEecCCCCEEEEecCCC---eEEE
Q 041206 253 KGHSDTVTSLL--------FW--DEYLFSSSLDETIKIWLYTHTKNN-AELSSLFGMLDAEAKPVLFSSGKDS---AIRL 318 (371)
Q Consensus 253 ~~~~~~v~~~~--------~~--~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~---~i~i 318 (371)
..|...+..+. |+ +.++++++.|+++++|++ .+.. .....+..+.+. ++.++++++.+. .+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~ 310 (582)
T 3o4h_A 234 ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAPQGNHGRVVLW-RGKLVTSHTSLSTPPRIVS 310 (582)
T ss_dssp CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCCSSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccCCCceEEEEec-CCEEEEEEcCCCCCCeEEE
Confidence 77877777677 88 568889999999999998 2211 111233344444 555777777664 4677
Q ss_pred EEcCC
Q 041206 319 YELPS 323 (371)
Q Consensus 319 wd~~~ 323 (371)
||..+
T Consensus 311 ~d~~~ 315 (582)
T 3o4h_A 311 LPSGE 315 (582)
T ss_dssp ETTCC
T ss_pred EcCCC
Confidence 77654
No 165
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.71 E-value=4.5e-16 Score=149.86 Aligned_cols=248 Identities=11% Similarity=0.036 Sum_probs=160.8
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCe----eE--EEeecCCEEEEec----------CCcEEEEEeC
Q 041206 101 NVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAE----IG--CLISEGSWVFLGL----------PNAVKSWRVN 164 (371)
Q Consensus 101 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~----------~~~i~~~~~~ 164 (371)
+++|+|++++++++ .|++|++||+.+++....+..+.. +. .+.+++++++.+. ++.+.+||+.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 77999999666654 699999999999998777665322 33 4556888887654 4899999987
Q ss_pred CCC----------eeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEE-ecCc-ce-----------------EE
Q 041206 165 AAS----------VNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASI-RAPL-WF-----------------CS 213 (371)
Q Consensus 165 ~~~----------v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~-~v-----------------~~ 213 (371)
++. +..++|+|+ .|+.+. ++.|++||+.++. ..... .++. .+ .+
T Consensus 99 ~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~----~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 99 NGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDP----PFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp TTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSC----CEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred CCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCC----cEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 664 467899998 666664 7899999998773 22211 1221 22 48
Q ss_pred EEecCCce-eEecccceeeeeCC----------------------------------CeEEEEECCCceEE--------E
Q 041206 214 LSSSNDTR-WNSKEEAAVFEFCG----------------------------------HTTRTWNLDNLECV--------Q 250 (371)
Q Consensus 214 ~~~~~~~~-l~~~~~~~~~~~~d----------------------------------g~i~iwd~~~~~~~--------~ 250 (371)
++|+|||+ |+.+ +.| ..|++||+.+++.. .
T Consensus 174 ~~wSPDG~~la~~-------~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 246 (719)
T 1z68_A 174 LWWSPNGKFLAYA-------EFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPA 246 (719)
T ss_dssp EEECTTSSEEEEE-------EEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCH
T ss_pred EEECCCCCEEEEE-------EECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCc
Confidence 99999996 6666 433 18899999988753 1
Q ss_pred EeecCCCcEEEEEEc--CCeEEEEeCC----CcEEEEE----ccCCCCccee--------cce------EEEEecCCCCE
Q 041206 251 TLKGHSDTVTSLLFW--DEYLFSSSLD----ETIKIWL----YTHTKNNAEL--------SSL------FGMLDAEAKPV 306 (371)
Q Consensus 251 ~~~~~~~~v~~~~~~--~~~l~s~~~d----g~i~iwd----~~~~~~~~~~--------~~~------~~~~~~~~~~~ 306 (371)
.+.+|...+.+++|+ ++++++.... ..|.+|| +...+..... ..+ ...+++++..+
T Consensus 247 ~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 326 (719)
T 1z68_A 247 MIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISY 326 (719)
T ss_dssp HHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCE
T ss_pred cCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeE
Confidence 234688889999999 3455553322 2488888 5543321111 111 12244555544
Q ss_pred EE-EecCCC--eEEEEEcCCcceeeeec-CCceEEEEEeCCCC--eEEeeCC----CCcEEEEEccc
Q 041206 307 LF-SSGKDS--AIRLYELPSFKLRARIF-SRREVEVDQIGPAG--LFFPGDA----SGSVGVWKWLL 363 (371)
Q Consensus 307 l~-~~~~d~--~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~--~l~~~~~----dg~i~iw~~~~ 363 (371)
++ +...++ .|.+||+.+++.. .+. +...+..+.++ ++ .++++.. ++..++|.+..
T Consensus 327 ~~~~~~~~g~~~l~~~~~~~~~~~-~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 327 YKIFSDKDGYKHIHYIKDTVENAI-QITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEEEECTTSCEEEEEESSCSTTCE-ECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred EEEEEccCCceEEEEEECCCCceE-ecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 43 344555 5777788776633 333 34557777766 66 4455544 58899998864
No 166
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.66 E-value=5e-14 Score=125.40 Aligned_cols=268 Identities=7% Similarity=0.002 Sum_probs=166.6
Q ss_pred cCCceeeEeeeCccCC-----eEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceEEEEeCCCee---EEEeecCCEEE
Q 041206 83 TNSLATLMKLNGHKKA-----VTNVGLPSGSNKLYSGSRD---GRVSVWDRDSGRCVNVITNGAEI---GCLISEGSWVF 151 (371)
Q Consensus 83 ~~~~~~~~~l~~h~~~-----V~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 151 (371)
...++.+..+..+... +..++|+|||++|+..... ..|.+||+.+++........... ..+.++++.++
T Consensus 17 ~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~ 96 (396)
T 3c5m_A 17 SDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFF 96 (396)
T ss_dssp TTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEE
T ss_pred CCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEE
Confidence 4455566666655443 7788999999998876543 36888999888765544433322 33466787774
Q ss_pred -EecCCcEEEEEeCCCCeeEEEEeCC-------EEEEE------------------------------eCCCeEEEEecc
Q 041206 152 -LGLPNAVKSWRVNAASVNALVVNND-------LLFAG------------------------------SEGGVISVWKGT 193 (371)
Q Consensus 152 -~~~~~~i~~~~~~~~~v~~~~~~~~-------~l~~~------------------------------~~dg~v~iwd~~ 193 (371)
+..++.+.+|++.++....+.-.+. .|+.. ..+..|.+||+.
T Consensus 97 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~ 176 (396)
T 3c5m_A 97 YVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIE 176 (396)
T ss_dssp EEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETT
T ss_pred EEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECC
Confidence 4566789999998886655543222 22211 345679999998
Q ss_pred CCCCcceeeEEEecCc-ceEEEEecC-Cce-eEecccceeeeeCC------CeEEEEECCCceEEEEeecC-CCcEEEEE
Q 041206 194 FVANPFKQVASIRAPL-WFCSLSSSN-DTR-WNSKEEAAVFEFCG------HTTRTWNLDNLECVQTLKGH-SDTVTSLL 263 (371)
Q Consensus 194 ~~~~~~~~~~~~~~~~-~v~~~~~~~-~~~-l~~~~~~~~~~~~d------g~i~iwd~~~~~~~~~~~~~-~~~v~~~~ 263 (371)
++ +..... .+. .+..+.|+| ++. ++.. +.+ ..|.+||+.+++........ ...+..+.
T Consensus 177 ~g----~~~~~~-~~~~~~~~~~~sp~dg~~l~~~-------~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~ 244 (396)
T 3c5m_A 177 TG----ELEVIH-QDTAWLGHPIYRPFDDSTVGFC-------HEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEF 244 (396)
T ss_dssp TC----CEEEEE-EESSCEEEEEEETTEEEEEEEE-------ECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEE
T ss_pred CC----cEEeec-cCCcccccceECCCCCCEEEEE-------ecCCCCCCCceEEEEECCCCceeEeeccCCCccccceE
Confidence 76 333333 344 889999999 675 5544 322 46899998766543333311 23577889
Q ss_pred Ec--CCeEEEEeCC-----CcEEEEEccCCCCcce--ecceEEEEecCCCCEEEEec----------------CCCeEEE
Q 041206 264 FW--DEYLFSSSLD-----ETIKIWLYTHTKNNAE--LSSLFGMLDAEAKPVLFSSG----------------KDSAIRL 318 (371)
Q Consensus 264 ~~--~~~l~s~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~----------------~d~~i~i 318 (371)
|+ +++|+..+.+ +.|++||+...+.... .......+.+++++++++++ .+..|++
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~ 324 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCSHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYV 324 (396)
T ss_dssp ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEEEEEECSSSSEEEEEECCC----------CCCCCCEEEE
T ss_pred ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCCCCccCCCCceEEEecCCcceeeccccccccCCCCcEEE
Confidence 98 5667666543 4499999876543211 11122334551555776643 3478999
Q ss_pred EEcCCcceeeeecCCc-----------eEEEEEeCCCC-eEEee-CCCCcEEEEEcc
Q 041206 319 YELPSFKLRARIFSRR-----------EVEVDQIGPAG-LFFPG-DASGSVGVWKWL 362 (371)
Q Consensus 319 wd~~~~~~~~~~~~~~-----------~v~~~~~s~~~-~l~~~-~~dg~i~iw~~~ 362 (371)
||+.+++...-..+.. .+..++|+|+| .|+.. ..++...+|.+.
T Consensus 325 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 325 LNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp EETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred EecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 9998876533222222 25668899999 55544 446666666654
No 167
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.66 E-value=1e-12 Score=114.25 Aligned_cols=256 Identities=7% Similarity=-0.039 Sum_probs=163.7
Q ss_pred cceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 041206 43 FGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSV 122 (371)
Q Consensus 43 ~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~i 122 (371)
..|.++++++....+.. ...++.++.|. .+....+.++...+.+++|+|++++++++..++.|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~ 70 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVP----IISESELQTIT-----------AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFK 70 (333)
T ss_dssp CCCCBCCSCGGGGCSSC----CCCGGGSCEEE-----------CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEE
T ss_pred cccceeeecCCccceeE----EeecccCcccc-----------cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEE
Confidence 34556666664332221 13344555554 3456677778888999999999998888888999999
Q ss_pred EECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCC----CeEEEEeccCCC
Q 041206 123 WDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEG----GVISVWKGTFVA 196 (371)
Q Consensus 123 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~d----g~v~iwd~~~~~ 196 (371)
||..+++....... ....+.+++++++ ++++...+ +.|.+||..+.
T Consensus 71 ~d~~~~~~~~~~~~---------------------------~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~- 122 (333)
T 2dg1_A 71 INPETKEIKRPFVS---------------------------HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD- 122 (333)
T ss_dssp ECTTTCCEEEEEEC---------------------------SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC-
T ss_pred EeCCCCcEEEEeeC---------------------------CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC-
Confidence 99988876544321 1234888999887 44444444 58999998876
Q ss_pred CcceeeEEEe--cCc-ceEEEEecCCceeEecccceeeeeC-------CCeEEEEECCCceEEEEeecCCCcEEEEEEc-
Q 041206 197 NPFKQVASIR--APL-WFCSLSSSNDTRWNSKEEAAVFEFC-------GHTTRTWNLDNLECVQTLKGHSDTVTSLLFW- 265 (371)
Q Consensus 197 ~~~~~~~~~~--~~~-~v~~~~~~~~~~l~~~~~~~~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~- 265 (371)
.....+. ... .+.+++++|+++++.+ +. .+.|..+|..+++.... ..+...+..++|+
T Consensus 123 ---~~~~~~~~~~~~~~~~~i~~d~~g~l~v~-------~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~i~~~~ 191 (333)
T 2dg1_A 123 ---NLQDIIEDLSTAYCIDDMVFDSKGGFYFT-------DFRGYSTNPLGGVYYVSPDFRTVTPI-IQNISVANGIALST 191 (333)
T ss_dssp ---SCEEEECSSSSCCCEEEEEECTTSCEEEE-------ECCCBTTBCCEEEEEECTTSCCEEEE-EEEESSEEEEEECT
T ss_pred ---EEEEEEccCccCCcccceEECCCCCEEEE-------eccccccCCCceEEEEeCCCCEEEEe-ecCCCcccceEECC
Confidence 3222222 233 7899999999986555 43 35677777766554332 2234457889998
Q ss_pred -CCeE-EEEeCCCcEEEEEccCC-CCcce--------e---cceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec
Q 041206 266 -DEYL-FSSSLDETIKIWLYTHT-KNNAE--------L---SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF 331 (371)
Q Consensus 266 -~~~l-~s~~~dg~i~iwd~~~~-~~~~~--------~---~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 331 (371)
++.| ++.+.++.|.+||+... ..... . .....+...+++++.++...++.|.+||.. ++.+..+.
T Consensus 192 dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~ 270 (333)
T 2dg1_A 192 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQIL 270 (333)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEE
T ss_pred CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEE
Confidence 4445 45556789999998542 11100 0 123334455556577776677899999984 55555554
Q ss_pred CC-c------eEEEEEeCCCC-eEEeeCCC
Q 041206 332 SR-R------EVEVDQIGPAG-LFFPGDAS 353 (371)
Q Consensus 332 ~~-~------~v~~~~~s~~~-~l~~~~~d 353 (371)
.. . .+.+++|+||+ .|+.++.+
T Consensus 271 ~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 271 IPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp CTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred cCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 22 2 68999999997 55544444
No 168
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.65 E-value=7e-14 Score=134.88 Aligned_cols=302 Identities=8% Similarity=0.003 Sum_probs=183.6
Q ss_pred eeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCC-----eEEEEEcCCCCEEEEEeCC--
Q 041206 45 LAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKA-----VTNVGLPSGSNKLYSGSRD-- 117 (371)
Q Consensus 45 v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~-----V~~~~~~~~~~~l~s~~~d-- 117 (371)
...++++|.+.++.. + ++.|++|+ ..+++....+.+|... ...++|||||++|+.++.+
T Consensus 19 ~~~~~w~~dg~~~~~-----~-~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~ 84 (740)
T 4a5s_A 19 LYSLRWISDHEYLYK-----Q-ENNILVFN--------AEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVK 84 (740)
T ss_dssp CCCEEECSSSEEEEE-----E-TTEEEEEE--------TTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEE
T ss_pred ccccEECCCCcEEEE-----c-CCcEEEEE--------CCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCee
Confidence 445677776654431 1 67899999 3455666778887643 2447889999999998876
Q ss_pred -------CcEEEEECCCCceEEEEeCCCeeE--EEeecCCEEEEecCCcEEEEEeCCCCe--------------------
Q 041206 118 -------GRVSVWDRDSGRCVNVITNGAEIG--CLISEGSWVFLGLPNAVKSWRVNAASV-------------------- 168 (371)
Q Consensus 118 -------g~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~v-------------------- 168 (371)
+.+.+||+.+++..........+. .++++++.++...++.|.+|+..++..
T Consensus 85 ~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v 164 (740)
T 4a5s_A 85 QWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWV 164 (740)
T ss_dssp CSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHH
T ss_pred eEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCccccc
Confidence 566799999998655333333333 445688888888899999999876521
Q ss_pred ---------eEEEEeCC--EEEEEeCCC------------------------------------eEEEEeccC---CCCc
Q 041206 169 ---------NALVVNND--LLFAGSEGG------------------------------------VISVWKGTF---VANP 198 (371)
Q Consensus 169 ---------~~~~~~~~--~l~~~~~dg------------------------------------~v~iwd~~~---~~~~ 198 (371)
.++.|+|+ .|+.++.|. .|++||+.+ +...
T Consensus 165 ~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~ 244 (740)
T 4a5s_A 165 YEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNA 244 (740)
T ss_dssp HHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCC
T ss_pred ccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcc
Confidence 13789998 676664221 577888877 5210
Q ss_pred ceeeEEEe------cCc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCce----EE--EEe--ecCCCcEE--
Q 041206 199 FKQVASIR------APL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLE----CV--QTL--KGHSDTVT-- 260 (371)
Q Consensus 199 ~~~~~~~~------~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~----~~--~~~--~~~~~~v~-- 260 (371)
....+. ++. .+..++|+||++ ++.... -...+..|++||+.+++ +. ..+ ..|...|.
T Consensus 245 --~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~---r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~ 319 (740)
T 4a5s_A 245 --TSIQITAPASMLIGDHYLCDVTWATQERISLQWLR---RIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRF 319 (740)
T ss_dssp --CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEE---SSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSS
T ss_pred --eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeC---CCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccC
Confidence 122333 255 899999999998 333200 00223479999999887 32 222 44555444
Q ss_pred ---EEEEc--CCeEE-EEe-CCC--cEEEEEccCCCCccee---cceEEEEecCCCCEEEEecC----CC--eEEEEEcC
Q 041206 261 ---SLLFW--DEYLF-SSS-LDE--TIKIWLYTHTKNNAEL---SSLFGMLDAEAKPVLFSSGK----DS--AIRLYELP 322 (371)
Q Consensus 261 ---~~~~~--~~~l~-s~~-~dg--~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~----d~--~i~iwd~~ 322 (371)
...|+ ++.++ ..+ .+| .|.+||+......... ..+......+++.+++++.. .+ .|+..++.
T Consensus 320 ~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~ 399 (740)
T 4a5s_A 320 RPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLI 399 (740)
T ss_dssp SCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETT
T ss_pred cCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECC
Confidence 67888 55655 554 344 5778887654431111 12233333445545555554 23 45555555
Q ss_pred Ccceeeeec-----CCceEEEEEeCCCC--eEEeeCCC--CcEEEEEccccc
Q 041206 323 SFKLRARIF-----SRREVEVDQIGPAG--LFFPGDAS--GSVGVWKWLLAE 365 (371)
Q Consensus 323 ~~~~~~~~~-----~~~~v~~~~~s~~~--~l~~~~~d--g~i~iw~~~~~~ 365 (371)
.+.....+. .........|+|++ ++++.+.. ..+.+++...++
T Consensus 400 g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~ 451 (740)
T 4a5s_A 400 DYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDK 451 (740)
T ss_dssp EEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTE
T ss_pred CCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCc
Confidence 544332332 13568899999999 34444332 367777776543
No 169
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.64 E-value=1e-11 Score=114.90 Aligned_cols=286 Identities=13% Similarity=0.106 Sum_probs=189.1
Q ss_pred CCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceEEEEeCCCeeE
Q 041206 64 GDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRD--SGRCVNVITNGAEIG 141 (371)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~ 141 (371)
...++.+.+++ ..+++.+.++... ..+..+.|+||++++++++.|+.|.+||+. +++.+.++..+....
T Consensus 173 ~~~~~~V~viD--------~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~ 243 (567)
T 1qks_A 173 LRDAGQIALID--------GSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR 243 (567)
T ss_dssp ETTTTEEEEEE--------TTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred eCCCCeEEEEE--------CCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc
Confidence 34566788888 4566778887743 357799999999999999999999999996 888888888765544
Q ss_pred EE--e----ecCCEEEEec--CCcEEEEEeCCCCe----------------------eEEEEeCC---EEEEEeCCCeEE
Q 041206 142 CL--I----SEGSWVFLGL--PNAVKSWRVNAASV----------------------NALVVNND---LLFAGSEGGVIS 188 (371)
Q Consensus 142 ~~--~----~~~~~~~~~~--~~~i~~~~~~~~~v----------------------~~~~~~~~---~l~~~~~dg~v~ 188 (371)
.+ . ++++++++++ ++.+.++|..+..+ ..+..+++ +++....+|.|.
T Consensus 244 ~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~ 323 (567)
T 1qks_A 244 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL 323 (567)
T ss_dssp EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEE
Confidence 43 3 3688888754 68999999766532 23334433 555556678999
Q ss_pred EEeccCCCCcceeeEEEecCcceEEEEecCCce-e-EecccceeeeeCCCeEEEEECCCceEEEEeec-----CCCcEEE
Q 041206 189 VWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-W-NSKEEAAVFEFCGHTTRTWNLDNLECVQTLKG-----HSDTVTS 261 (371)
Q Consensus 189 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l-~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~ 261 (371)
++|...... ..+..+........+.|+|+++ + ++. ..++.|.++|+.+++.+..+.. |.+.-..
T Consensus 324 ~vd~~~~~~--~~v~~i~~~~~~~d~~~~pdgr~~~va~-------~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~ 394 (567)
T 1qks_A 324 LVDYTDLNN--LKTTEISAERFLHDGGLDGSHRYFITAA-------NARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN 394 (567)
T ss_dssp EEETTCSSE--EEEEEEECCSSEEEEEECTTSCEEEEEE-------GGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE
T ss_pred EEecCCCcc--ceeeeeeccccccCceECCCCCEEEEEe-------CCCCeEEEEECCCCcEEEEEeccCcCCCCcccee
Confidence 999876521 1222332222667889999997 4 444 5688999999999998776654 3221112
Q ss_pred EEEcC--C-eEEEEe-CCCcEEEEEccCCCCc----ceecce-------EEEEecCCCCEEEEecC-------CCeEEEE
Q 041206 262 LLFWD--E-YLFSSS-LDETIKIWLYTHTKNN----AELSSL-------FGMLDAEAKPVLFSSGK-------DSAIRLY 319 (371)
Q Consensus 262 ~~~~~--~-~l~s~~-~dg~i~iwd~~~~~~~----~~~~~~-------~~~~~~~~~~~l~~~~~-------d~~i~iw 319 (371)
+ +++ . ..+++. .+++|.++|.....+. ..+..+ ..+..+++++++.+... .+.|.++
T Consensus 395 ~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~ 473 (567)
T 1qks_A 395 F-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVF 473 (567)
T ss_dssp E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEE
T ss_pred e-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEE
Confidence 2 332 3 444443 4689999998763321 111111 11233455557776552 3589999
Q ss_pred EcCCc-----cee-eeec---------CCceEEEEEeCCCC--eEEeeC----CCCcEEEEEccccceec
Q 041206 320 ELPSF-----KLR-ARIF---------SRREVEVDQIGPAG--LFFPGD----ASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 320 d~~~~-----~~~-~~~~---------~~~~v~~~~~s~~~--~l~~~~----~dg~i~iw~~~~~~~~~ 368 (371)
|+.+. ... ..+. ....+..+.|+|+| .+++.. .++.|.|+|..+.++.+
T Consensus 474 d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~ 543 (567)
T 1qks_A 474 DIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKH 543 (567)
T ss_dssp EGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred ECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEE
Confidence 99876 211 2221 24688999999999 444432 47999999998877654
No 170
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.64 E-value=7.8e-13 Score=114.76 Aligned_cols=251 Identities=9% Similarity=-0.045 Sum_probs=166.7
Q ss_pred CCccceEEEEEeccCCCCccCCceeeEeee------CccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC
Q 041206 64 GDKCRFLHSWVHSVDGDNTTNSLATLMKLN------GHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNG 137 (371)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~------~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 137 (371)
+..+..|..++ ..+++....+. ........+.+. +++..++...++.|.+||..+++.+.++...
T Consensus 13 g~~~~~l~~~d--------~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~ 83 (328)
T 3dsm_A 13 QYSNATLSYYD--------PATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGF 83 (328)
T ss_dssp TSCCBEEEEEE--------TTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECC
T ss_pred CCCCceEEEEE--------CCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCC
Confidence 44567788888 33444444331 122446778875 3455566666899999999999998887532
Q ss_pred CeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC-EEEEEe-CCCeEEEEeccCCCCcceeeEEEecCc------
Q 041206 138 AEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND-LLFAGS-EGGVISVWKGTFVANPFKQVASIRAPL------ 209 (371)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~-~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~------ 209 (371)
. ....++++++ .++++. .++.|.+||..+. +....+....
T Consensus 84 ~----------------------------~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~----~~~~~i~~g~~~~~~~ 131 (328)
T 3dsm_A 84 T----------------------------SPRYIHFLSDEKAYVTQIWDYRIFIINPKTY----EITGYIECPDMDMESG 131 (328)
T ss_dssp S----------------------------SEEEEEEEETTEEEEEEBSCSEEEEEETTTT----EEEEEEECTTCCTTTC
T ss_pred C----------------------------CCcEEEEeCCCeEEEEECCCCeEEEEECCCC----eEEEEEEcCCccccCC
Confidence 2 3677888655 555555 7899999999987 6665555433
Q ss_pred ceEEEEecCCceeEecccceeeee--CCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCC----------
Q 041206 210 WFCSLSSSNDTRWNSKEEAAVFEF--CGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLD---------- 275 (371)
Q Consensus 210 ~v~~~~~~~~~~l~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d---------- 275 (371)
....+++ .+++++++ . .++.|.++|+.+++.+..+.... ....+.++ +++++++..+
T Consensus 132 ~p~~i~~-~~~~lyv~-------~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~ 202 (328)
T 3dsm_A 132 STEQMVQ-YGKYVYVN-------CWSYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEA 202 (328)
T ss_dssp BCCCEEE-ETTEEEEE-------ECTTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCC
T ss_pred CcceEEE-ECCEEEEE-------cCCCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccCCccccCC
Confidence 4556666 44565554 4 48999999999999888877533 34677777 4555555444
Q ss_pred CcEEEEEccCCCCcceec-----ceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeee-cC--CceEEEEEeCCC-C-
Q 041206 276 ETIKIWLYTHTKNNAELS-----SLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARI-FS--RREVEVDQIGPA-G- 345 (371)
Q Consensus 276 g~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~--~~~v~~~~~s~~-~- 345 (371)
+.|.++|..+.+....+. ....+...+++..++++.. .|.+||..+++..... .. ......++++|+ +
T Consensus 203 ~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~ 280 (328)
T 3dsm_A 203 PSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGE 280 (328)
T ss_dssp CEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCC
T ss_pred ceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCe
Confidence 789999987654322211 2344455554446766654 8999999987764322 12 357899999995 4
Q ss_pred eEEee----CCCCcEEEEEcccccee
Q 041206 346 LFFPG----DASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 346 ~l~~~----~~dg~i~iw~~~~~~~~ 367 (371)
++++. ..++.|.+|+.. ++..
T Consensus 281 lyva~~~~y~~~~~V~v~d~~-g~~~ 305 (328)
T 3dsm_A 281 VYVADAIDYQQQGIVYRYSPQ-GKLI 305 (328)
T ss_dssp EEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred EEEEcccccccCCEEEEECCC-CCEE
Confidence 66666 678999999998 5443
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.63 E-value=1.2e-13 Score=131.55 Aligned_cols=282 Identities=9% Similarity=-0.054 Sum_probs=169.7
Q ss_pred EEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeE---------EEEEc--C
Q 041206 38 EEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVT---------NVGLP--S 106 (371)
Q Consensus 38 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~---------~~~~~--~ 106 (371)
+.+|...+..+++++...+.. ......++...+|.. ..+ .....+..|...+. ...|+ |
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~~~l~~~-------~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SP 88 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWV--APRPAEAGRATLVRR-------RAD-GAEESALPAPWNVRNRVFEYSGFPWAGVPRP 88 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEE--EEETTTTTEEEEEEE-------CTT-SCEEESSCTTCCBCCCGGGTCCCCEEEECCS
T ss_pred HhhcCCccceeEEcCCeEEEE--ecCcccCCcEEEEEE-------CCC-CCcceeCCCCccccccccccCCccceeeeec
Confidence 346777888888886544322 111234556677773 122 33556666766666 56565 9
Q ss_pred CCCE-EEEEeC-CCcEEEEECC--C-CceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEE
Q 041206 107 GSNK-LYSGSR-DGRVSVWDRD--S-GRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLF 179 (371)
Q Consensus 107 ~~~~-l~s~~~-dg~v~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~ 179 (371)
|+++ |+.++. +..|.+|++. . ++. ..+...... .+...+.+++|+|+ .|+
T Consensus 89 Dg~~~la~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~~~----------------------~~~~~~~~~~~spDg~~l~ 145 (662)
T 3azo_A 89 AGGPLLVFTHFGDQRLYAFEPDAPGGAVP-RPLTPVSAV----------------------GGGLRWADPVLLPERGEVW 145 (662)
T ss_dssp SSSCEEEEEBTTTCCEEEECTTSTTCCCC-EECSCCCCS----------------------TTCEEEEEEEEETTTTEEE
T ss_pred CCCeEEEEEECCCCeEEEEcCCCCCCCCC-EeccCCccC----------------------CCCccccCcEECCCCCEEE
Confidence 9998 766553 5667777765 2 433 222221000 01123678899998 777
Q ss_pred EEeCC----------CeEEEEeccC------CCCcceeeEEEe-cCc-ceEEEEecCCce-eEecccceeeeeCC-----
Q 041206 180 AGSEG----------GVISVWKGTF------VANPFKQVASIR-APL-WFCSLSSSNDTR-WNSKEEAAVFEFCG----- 235 (371)
Q Consensus 180 ~~~~d----------g~v~iwd~~~------~~~~~~~~~~~~-~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~d----- 235 (371)
.++.+ ..|++||+.+ + +. ..+. .+. .+..++|+|||+ |+.+ +.+
T Consensus 146 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~~-~~l~~~~~~~~~~~~~SpDG~~la~~-------~~~~~~~~ 213 (662)
T 3azo_A 146 CMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS----AV-RELSDDAHRFVTGPRLSPDGRQAVWL-------AWDHPRMP 213 (662)
T ss_dssp EEEEEECSSSTTCEEEEEEEEETTSTTTTCGG----GS-EESSCSCSSEECCCEECTTSSEEEEE-------EECTTCCT
T ss_pred EEEecccCCCCCCceeEEEEEECCCCccccCC----ce-eEEEecCCCcccCceECCCCCEEEEE-------ECCCCCCC
Confidence 77766 5899999987 4 22 2333 444 788899999997 6655 533
Q ss_pred ---CeEEEEECC-Cc---eEEEEeecCCCcEEEEEEc--CCeEEEEeCCC--cEEEEEccCCCCc------ceec-----
Q 041206 236 ---HTTRTWNLD-NL---ECVQTLKGHSDTVTSLLFW--DEYLFSSSLDE--TIKIWLYTHTKNN------AELS----- 293 (371)
Q Consensus 236 ---g~i~iwd~~-~~---~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg--~i~iwd~~~~~~~------~~~~----- 293 (371)
..|++||+. ++ +......+|...+..+.|+ +++++++..++ .|.+||+...+.. ....
T Consensus 214 ~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~ 293 (662)
T 3azo_A 214 WEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWT 293 (662)
T ss_dssp TTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCS
T ss_pred CCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCcccc
Confidence 489999999 56 5544555567889999998 56777888888 5555554333210 0000
Q ss_pred -ceEEEEecCCCCEEEEecCCCeEEEE--EcCCcceeeeec-CCceEEEE-EeCCCC-eEEeeCCCCcEEEE--Eccccc
Q 041206 294 -SLFGMLDAEAKPVLFSSGKDSAIRLY--ELPSFKLRARIF-SRREVEVD-QIGPAG-LFFPGDASGSVGVW--KWLLAE 365 (371)
Q Consensus 294 -~~~~~~~~~~~~~l~~~~~d~~i~iw--d~~~~~~~~~~~-~~~~v~~~-~~s~~~-~l~~~~~dg~i~iw--~~~~~~ 365 (371)
.+..+.+.+++.+++++.. +.++|| |+.+++ +..+. +...+..+ +++++. .+++++.+....+| ++.+++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 294 PGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp TTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred ccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 0122333455668888888 999999 655555 34443 45667777 555444 55666666554555 554554
Q ss_pred e
Q 041206 366 Q 366 (371)
Q Consensus 366 ~ 366 (371)
.
T Consensus 372 ~ 372 (662)
T 3azo_A 372 A 372 (662)
T ss_dssp E
T ss_pred e
Confidence 3
No 172
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.63 E-value=2.7e-13 Score=130.20 Aligned_cols=236 Identities=9% Similarity=-0.040 Sum_probs=155.1
Q ss_pred CccCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCe
Q 041206 94 GHKKAVTNVGLPSGSNKLYSGSRDG-----RVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASV 168 (371)
Q Consensus 94 ~h~~~V~~~~~~~~~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v 168 (371)
+|...+..++|||||++||.++.++ .|++||+.+++........ ..+
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~----------------------------~~~ 173 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER----------------------------VKF 173 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE----------------------------ECS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC----------------------------ccc
Confidence 3555789999999999998776543 8999999999876532211 025
Q ss_pred eEEEEeCC--EEEEEeCCCe----------------EEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccc
Q 041206 169 NALVVNND--LLFAGSEGGV----------------ISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEA 228 (371)
Q Consensus 169 ~~~~~~~~--~l~~~~~dg~----------------v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~ 228 (371)
..++|+|+ .|+.++.++. |++|++.++......+.....+. .+..+.|+|||+ ++..
T Consensus 174 ~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~--- 250 (710)
T 2xdw_A 174 SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS--- 250 (710)
T ss_dssp CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE---
T ss_pred ceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEE---
Confidence 56888887 6777766655 99999987632111222222234 678999999997 5544
Q ss_pred eeeeeC-----CCeEEEEECCC------ce-EEEEeecCCCcEEEEEEc--CCeEEEEeCC----CcEEEEEccCCCC--
Q 041206 229 AVFEFC-----GHTTRTWNLDN------LE-CVQTLKGHSDTVTSLLFW--DEYLFSSSLD----ETIKIWLYTHTKN-- 288 (371)
Q Consensus 229 ~~~~~~-----dg~i~iwd~~~------~~-~~~~~~~~~~~v~~~~~~--~~~l~s~~~d----g~i~iwd~~~~~~-- 288 (371)
+. +..|++||+.+ ++ ....+..+...+... |+ ++.|+..+.. +.|.+||+.....
T Consensus 251 ----~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~ 325 (710)
T 2xdw_A 251 ----IREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESK 325 (710)
T ss_dssp ----EECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGG
T ss_pred ----EEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccc
Confidence 32 67899999986 43 355666666655553 43 6666655543 3699999876531
Q ss_pred -ccee-----cceEEEEecCCCCEEEEecCCCe--EEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEE-e---eCCCC
Q 041206 289 -NAEL-----SSLFGMLDAEAKPVLFSSGKDSA--IRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFF-P---GDASG 354 (371)
Q Consensus 289 -~~~~-----~~~~~~~~~~~~~~l~~~~~d~~--i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~-~---~~~dg 354 (371)
...+ ..+..+.+.+++.++++...++. |++|++.+++.+..+. +...+..+.++|++ .++ + ....+
T Consensus 326 ~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~ 405 (710)
T 2xdw_A 326 WKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPG 405 (710)
T ss_dssp CEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCC
T ss_pred ceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCC
Confidence 1000 12333444455557888888874 6667876776655554 46788999999988 443 2 23467
Q ss_pred cEEEEEccccc
Q 041206 355 SVGVWKWLLAE 365 (371)
Q Consensus 355 ~i~iw~~~~~~ 365 (371)
.|+.||+.+++
T Consensus 406 ~i~~~d~~tg~ 416 (710)
T 2xdw_A 406 IIYHCDLTKEE 416 (710)
T ss_dssp EEEEEETTSSS
T ss_pred EEEEEECCCCc
Confidence 99999997765
No 173
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.61 E-value=2.6e-13 Score=130.91 Aligned_cols=255 Identities=10% Similarity=0.078 Sum_probs=158.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCC------ee--EEEeecCCEEEEecC----------CcEE
Q 041206 98 AVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGA------EI--GCLISEGSWVFLGLP----------NAVK 159 (371)
Q Consensus 98 ~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~----------~~i~ 159 (371)
...+++|+||+++++++ |++|++||+.++++...+..+. .. ..+++++++++.+.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 45688999999999986 8999999999999877766532 12 355678888877554 5677
Q ss_pred EEEeCCC----------CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeE-EEecCc-ce--------------
Q 041206 160 SWRVNAA----------SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVA-SIRAPL-WF-------------- 211 (371)
Q Consensus 160 ~~~~~~~----------~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~-~v-------------- 211 (371)
+||+.++ .+...+|+|+ .|+.+ .++.|++|++.++. ..+ +..++. .+
T Consensus 96 ~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~----~~~lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 96 IYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP----SYRITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC----CEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCc----eEEEcCCCCccceecCcccccccchhc
Confidence 9999776 5788999998 66666 57899999998773 221 112222 22
Q ss_pred ---EEEEecCCce-eEecc--cc---e--e--------------------ee--eCCCeEEEEECCC---c---eEEEEe
Q 041206 212 ---CSLSSSNDTR-WNSKE--EA---A--V--------------------FE--FCGHTTRTWNLDN---L---ECVQTL 252 (371)
Q Consensus 212 ---~~~~~~~~~~-l~~~~--~~---~--~--------------------~~--~~dg~i~iwd~~~---~---~~~~~~ 252 (371)
..+.|||||+ |+... .. + + .+ .....|++||+.+ + +.. .+
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~-~l 249 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI-QI 249 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE-EE
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE-Ee
Confidence 3489999997 65540 00 0 0 00 0112689999998 7 333 33
Q ss_pred e------cCCCcEEEEEEc--CCeEEEEeC----CCcEEEEEccCCC-------Cc--------ceec---ceEEEEecC
Q 041206 253 K------GHSDTVTSLLFW--DEYLFSSSL----DETIKIWLYTHTK-------NN--------AELS---SLFGMLDAE 302 (371)
Q Consensus 253 ~------~~~~~v~~~~~~--~~~l~s~~~----dg~i~iwd~~~~~-------~~--------~~~~---~~~~~~~~~ 302 (371)
. +|...+..++|+ ++.++.... +..|++||+...+ .. ..+. .....++++
T Consensus 250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspD 329 (740)
T 4a5s_A 250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLD 329 (740)
T ss_dssp CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTT
T ss_pred cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCC
Confidence 3 377789999998 454554432 3479999987765 11 1111 011224454
Q ss_pred CCCEEE-Eec-CC--CeEEEEEcCCcceeeeecCCceEEEEE-eCCCC-eEEeeCC----CCcEEEEEcc
Q 041206 303 AKPVLF-SSG-KD--SAIRLYELPSFKLRARIFSRREVEVDQ-IGPAG-LFFPGDA----SGSVGVWKWL 362 (371)
Q Consensus 303 ~~~~l~-~~~-~d--~~i~iwd~~~~~~~~~~~~~~~v~~~~-~s~~~-~l~~~~~----dg~i~iw~~~ 362 (371)
+. .++ ..+ .+ ..|++||+.+++......+...+..+. ++ ++ .+++++. .+..++|.+.
T Consensus 330 G~-~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~~d-~~~i~f~~~~~~~~~~~~~ly~v~ 397 (740)
T 4a5s_A 330 GN-SFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALT-SDYLYYISNEYKGMPGGRNLYKIQ 397 (740)
T ss_dssp SS-EEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEEEC-SSEEEEEESCGGGCTTCBEEEEEE
T ss_pred CC-EEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEEEe-CCEEEEEEecCCCCCceeEEEEEE
Confidence 44 544 444 33 468888988766554443455555544 44 33 4555544 3445555543
No 174
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.60 E-value=1.8e-12 Score=110.69 Aligned_cols=237 Identities=10% Similarity=0.023 Sum_probs=156.0
Q ss_pred ceeeEeeeCccCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeC
Q 041206 86 LATLMKLNGHKKAVTNVGLPSGSN-KLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVN 164 (371)
Q Consensus 86 ~~~~~~l~~h~~~V~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 164 (371)
...+..+..+.....+++|+|+++ +++++..++.|..||..++ ...+.. .
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~---------------------------~ 67 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMH---------------------------P 67 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEES---------------------------S
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEEC---------------------------C
Confidence 344556666777889999999998 7888888999999998877 444432 2
Q ss_pred CCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEe---cCc--ceEEEEecCCceeEe-----cccceeee
Q 041206 165 AASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIR---APL--WFCSLSSSNDTRWNS-----KEEAAVFE 232 (371)
Q Consensus 165 ~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---~~~--~v~~~~~~~~~~l~~-----~~~~~~~~ 232 (371)
...+.+++++++ ++++...++.|.+||..++ +...... ... .+..++++|+|+++. |
T Consensus 68 ~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g----~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g------- 136 (296)
T 3e5z_A 68 SHHQNGHCLNKQGHLIACSHGLRRLERQREPGG----EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYG------- 136 (296)
T ss_dssp CSSEEEEEECTTCCEEEEETTTTEEEEECSTTC----CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHH-------
T ss_pred CCCcceeeECCCCcEEEEecCCCeEEEEcCCCC----cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccc-------
Confidence 235788999887 4444445689999999776 3222211 111 567899999998544 3
Q ss_pred e-------------CCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCc----cee-
Q 041206 233 F-------------CGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNN----AEL- 292 (371)
Q Consensus 233 ~-------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~----~~~- 292 (371)
+ ..+.|..++.. ++. ..+..+......++|+ ++.+++.+.++.|.+|++...... ..+
T Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~ 214 (296)
T 3e5z_A 137 IDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFT 214 (296)
T ss_dssp HHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEEC
T ss_pred cccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEee
Confidence 3 13567777766 443 3445566778899998 566777778899999998622111 010
Q ss_pred ---cceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEe-CCCC-eEEeeCCCCcEEEEEcccccee
Q 041206 293 ---SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQI-GPAG-LFFPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 293 ---~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~-s~~~-~l~~~~~dg~i~iw~~~~~~~~ 367 (371)
.....+...+++++.++. ++.|.+||.. ++.+..+.....+.+++| +|++ .|++++.+ .+.-++..+.+++
T Consensus 215 ~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 215 VEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQTTSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp CSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSCCCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred CCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCCceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence 011123344445455554 7899999987 666666653333899999 6888 77777665 4555577666665
Q ss_pred c
Q 041206 368 K 368 (371)
Q Consensus 368 ~ 368 (371)
+
T Consensus 291 ~ 291 (296)
T 3e5z_A 291 H 291 (296)
T ss_dssp C
T ss_pred c
Confidence 4
No 175
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.60 E-value=3.1e-12 Score=112.51 Aligned_cols=259 Identities=10% Similarity=0.023 Sum_probs=165.4
Q ss_pred cccceeEEEEEeeccceeeeeeeecceeecccee------eCCccceEEEEEeccCCCCccCCceeeEeeeCc------c
Q 041206 29 LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCV------YGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGH------K 96 (371)
Q Consensus 29 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h------~ 96 (371)
..+++++..+..+... .++++|.+.++..... .+..+..+..|+ ....+.+.++..+ .
T Consensus 38 ~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d--------~~t~~~~~~i~~~~~~~~~g 107 (361)
T 2oiz_A 38 YTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWD--------ADKLTFEKEISLPPKRVQGL 107 (361)
T ss_dssp TTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEE--------TTTCCEEEEEEECTTBCCBC
T ss_pred CCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEE--------CcCCcEEEEEEcCccccccC
Confidence 4567777777665443 7889988765432221 233567889998 3456677766532 3
Q ss_pred CCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceEEE-EeCCCeeE-EEeecC--CEEEEecCCcEEEEEeCC-CCee
Q 041206 97 KAVTNVGLPSGSNKLYSGSR--DGRVSVWDRDSGRCVNV-ITNGAEIG-CLISEG--SWVFLGLPNAVKSWRVNA-ASVN 169 (371)
Q Consensus 97 ~~V~~~~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~-~~~~~~~~-~~~~~~--~~~~~~~~~~i~~~~~~~-~~v~ 169 (371)
.....++|+|||++|+++.. +++|.+||+.+++.+.. +....... .+.+.+ .++..+.++.+..|+... +.+.
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~ 187 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVA 187 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEE
T ss_pred CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEe
Confidence 45778999999999999874 58999999999998888 66544311 223332 233445677777777754 3333
Q ss_pred EE----------------EEeC--CEEEEEeCCCeEEEEeccCCCCcceeeEEEecC----------c-ceEEEEecCCc
Q 041206 170 AL----------------VVNN--DLLFAGSEGGVISVWKGTFVANPFKQVASIRAP----------L-WFCSLSSSNDT 220 (371)
Q Consensus 170 ~~----------------~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~----------~-~v~~~~~~~~~ 220 (371)
.. .+.+ ..++..+.++.|.++|+..... .....+... . ....++++|++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg 265 (361)
T 2oiz_A 188 SQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEV--KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRAS 265 (361)
T ss_dssp EEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSC--EEEEEEESCCHHHHHTTCEECCSSCEEEETTT
T ss_pred eeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCc--eecccccccCccccccccccCCeeEEEEecCC
Confidence 11 1112 2556667889999999976521 222222110 0 11237889986
Q ss_pred e-eEecccceeeeeC-----------CCeEEEEECCCceEEEEeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCC
Q 041206 221 R-WNSKEEAAVFEFC-----------GHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKN 288 (371)
Q Consensus 221 ~-l~~~~~~~~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 288 (371)
. ++++ .. .+.|.+||+.+++.+.++..+. ..+++|
T Consensus 266 ~~lyv~-------~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~------------------------ 312 (361)
T 2oiz_A 266 GRMYVF-------MHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTI------------------------ 312 (361)
T ss_dssp TEEEEE-------EESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEE------------------------
T ss_pred CeEEEE-------EccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEE------------------------
Confidence 4 5443 22 4589999999999998888664 444443
Q ss_pred cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCc--ceeeee-cCCceEEEEEeCCCC
Q 041206 289 NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSF--KLRARI-FSRREVEVDQIGPAG 345 (371)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~-~~~~~v~~~~~s~~~ 345 (371)
.+++. +|++++. +.|.+||..++ +.+..+ ........++++|+|
T Consensus 313 -----------spdg~-~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 313 -----------DQQRN-LMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVG 359 (361)
T ss_dssp -----------ETTTT-EEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCS
T ss_pred -----------CCCCC-EEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCC
Confidence 33333 5666655 88888888888 777776 345667788888886
No 176
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.60 E-value=2.2e-13 Score=120.98 Aligned_cols=238 Identities=9% Similarity=-0.097 Sum_probs=146.4
Q ss_pred ccceeEEEEEeeccceee-----eeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEE
Q 041206 30 MKGRAEEREEMFGFGLAA-----MAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGL 104 (371)
Q Consensus 30 ~~~~~~~~~~~h~~~v~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~ 104 (371)
..+..+..+..|...... .+++|...++..... ......|+.|+ ..+++......+|...+..++|
T Consensus 18 ~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~-~~g~~~l~~~d--------~~~g~~~~lt~~~~~~~~~~~~ 88 (388)
T 3pe7_A 18 STGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGA-FDGPWNYYLLD--------LNTQVATQLTEGRGDNTFGGFL 88 (388)
T ss_dssp TTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEEC-TTSSCEEEEEE--------TTTCEEEECCCSSCBCSSSCEE
T ss_pred CCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEc-CCCCceEEEEe--------CCCCceEEeeeCCCCCccceEE
Confidence 345555666666554444 678887765442221 11222466666 3456667777777777777889
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeE----E-EeecCCEEEE-----------------------ecCC
Q 041206 105 PSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIG----C-LISEGSWVFL-----------------------GLPN 156 (371)
Q Consensus 105 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~-----------------------~~~~ 156 (371)
+||++.|+.++.++.|++||+.+++.......+.... . ..+++.+++. ..+.
T Consensus 89 spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (388)
T 3pe7_A 89 SPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCC 168 (388)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCE
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcc
Confidence 9999999999999999999999998776665543311 1 1345666652 1235
Q ss_pred cEEEEEeCCC----------CeeEEEEeC-C--EEEEEeCC------CeEEEEeccCCCCcceeeEEEecCc---ceEEE
Q 041206 157 AVKSWRVNAA----------SVNALVVNN-D--LLFAGSEG------GVISVWKGTFVANPFKQVASIRAPL---WFCSL 214 (371)
Q Consensus 157 ~i~~~~~~~~----------~v~~~~~~~-~--~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~---~v~~~ 214 (371)
.|.+||+.++ .+..+.|+| + .|+....+ ..|.++|+... .. ..+..+. .+..+
T Consensus 169 ~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~----~~-~~l~~~~~~~~~~~~ 243 (388)
T 3pe7_A 169 RLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT----NM-RKVKTHAEGESCTHE 243 (388)
T ss_dssp EEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC----CC-EESCCCCTTEEEEEE
T ss_pred eEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC----ce-EEeeeCCCCcccccc
Confidence 6888887766 467788999 6 56655543 37888887664 22 2222222 57789
Q ss_pred EecCCce-eEecccceeeeeCC----CeEEEEECCCceEE--EEeecCCCc---EEEEEEc--CCeEEEE---------e
Q 041206 215 SSSNDTR-WNSKEEAAVFEFCG----HTTRTWNLDNLECV--QTLKGHSDT---VTSLLFW--DEYLFSS---------S 273 (371)
Q Consensus 215 ~~~~~~~-l~~~~~~~~~~~~d----g~i~iwd~~~~~~~--~~~~~~~~~---v~~~~~~--~~~l~s~---------~ 273 (371)
+|+|||+ |+... ..+ ..|++||+.+++.. ..+.++... ...+.|+ ++.|+.. .
T Consensus 244 ~~spdg~~l~~~~------~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 317 (388)
T 3pe7_A 244 FWVPDGSALVYVS------YLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIE 317 (388)
T ss_dssp EECTTSSCEEEEE------EETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------C
T ss_pred eECCCCCEEEEEe------cCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccC
Confidence 9999997 54430 222 24999999988743 333321100 0112455 5555533 4
Q ss_pred CCCcEEEEEccCCC
Q 041206 274 LDETIKIWLYTHTK 287 (371)
Q Consensus 274 ~dg~i~iwd~~~~~ 287 (371)
.+..|++||+...+
T Consensus 318 ~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 318 NDPFLYVFNMKNGT 331 (388)
T ss_dssp CCCEEEEEETTTTE
T ss_pred CCCEEEEEeccCCc
Confidence 56789999987654
No 177
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.59 E-value=9.1e-13 Score=110.87 Aligned_cols=231 Identities=8% Similarity=-0.001 Sum_probs=154.0
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC
Q 041206 98 AVTNVGLPSGSNKLY-SGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND 176 (371)
Q Consensus 98 ~V~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~ 176 (371)
...++++++++++++ +...++.|.+||..++.... +... ....+.+++++++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~~~~--------------------------~~~~p~~i~~~~~ 77 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LPFN--------------------------GLYQPQGLAVDGA 77 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-CCCC--------------------------SCCSCCCEEECTT
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-EeeC--------------------------CcCCcceeEECCC
Confidence 678999999998777 54778899999976544321 1110 1124677888877
Q ss_pred -EEEEEeCCCeEEEEeccCCCCcceeeEEEe-cC-cceEEEEecCCcee-EecccceeeeeCCCeEEEEECCCceEEEEe
Q 041206 177 -LLFAGSEGGVISVWKGTFVANPFKQVASIR-AP-LWFCSLSSSNDTRW-NSKEEAAVFEFCGHTTRTWNLDNLECVQTL 252 (371)
Q Consensus 177 -~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~-~~v~~~~~~~~~~l-~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~ 252 (371)
.++++..++.|.+||.... . ...+. .. ..+..+++.+++++ ++. ..++.|.+|+..+.......
T Consensus 78 g~l~v~~~~~~i~~~d~~~~----~-~~~~~~~~~~~p~~i~~~~~g~l~v~~-------~~~~~i~~~~~~~~~~~~~~ 145 (270)
T 1rwi_B 78 GTVYVTDFNNRVVTLAAGSN----N-QTVLPFDGLNYPEGLAVDTQGAVYVAD-------RGNNRVVKLAAGSKTQTVLP 145 (270)
T ss_dssp CCEEEEETTTEEEEECTTCS----C-CEECCCCSCSSEEEEEECTTCCEEEEE-------GGGTEEEEECTTCCSCEECC
T ss_pred CCEEEEcCCCEEEEEeCCCc----e-EeeeecCCcCCCcceEECCCCCEEEEE-------CCCCEEEEEECCCceeEeec
Confidence 4555555889999998765 2 22222 22 27889999999874 444 55789999987665443322
Q ss_pred ecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCc----ceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcce
Q 041206 253 KGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNN----AELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKL 326 (371)
Q Consensus 253 ~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 326 (371)
......+.+++++ ++++++...++.|.+||....... ........+...+++.++++...++.|.+||......
T Consensus 146 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~ 225 (270)
T 1rwi_B 146 FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS 225 (270)
T ss_dssp CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence 2333467788887 566666667889999997654321 1112344455555556777777788999999876544
Q ss_pred eeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccccee
Q 041206 327 RARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 327 ~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~ 367 (371)
..... +...+.+++++|+| ++++...++.|+++++...+..
T Consensus 226 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~~ 268 (270)
T 1rwi_B 226 TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHHH 268 (270)
T ss_dssp EECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGSC
T ss_pred eeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcccc
Confidence 33222 23578999999999 8888889999999999877654
No 178
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.57 E-value=4.7e-12 Score=110.65 Aligned_cols=215 Identities=10% Similarity=0.070 Sum_probs=135.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCC---C--cEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEE
Q 041206 97 KAVTNVGLPSGSNKLYSGSRD---G--RVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNAL 171 (371)
Q Consensus 97 ~~V~~~~~~~~~~~l~s~~~d---g--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~ 171 (371)
..+..++|+|||++|+.++.+ + .|.+||+.+++.......+. +..+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-----------------------------~~~~ 109 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-----------------------------IRSL 109 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-----------------------------EEEE
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-----------------------------ccce
Confidence 568899999999999987754 3 38888888877655444322 4455
Q ss_pred EEeCC--EEEEEeC---------------------------CCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCcee
Q 041206 172 VVNND--LLFAGSE---------------------------GGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTRW 222 (371)
Q Consensus 172 ~~~~~--~l~~~~~---------------------------dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l 222 (371)
+|+|+ .|+.++. ...|.+||+.++ +.+..+... .+..+.|+||+.+
T Consensus 110 ~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~----~~~~~l~~~-~~~~~~~spdg~~ 184 (347)
T 2gop_A 110 EWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE----EVIEEFEKP-RFSSGIWHRDKIV 184 (347)
T ss_dssp EECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT----EEEEEEEEE-TTCEEEEETTEEE
T ss_pred eECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC----eEEeeecCC-CcccccCCCCeEE
Confidence 55555 3443332 357899999877 442333332 6778999999933
Q ss_pred EecccceeeeeCC---------CeEEEEECCCceEEEEeecCCCcEEEEEEcCCeEEEEeCC--------CcEEEEEccC
Q 041206 223 NSKEEAAVFEFCG---------HTTRTWNLDNLECVQTLKGHSDTVTSLLFWDEYLFSSSLD--------ETIKIWLYTH 285 (371)
Q Consensus 223 ~~~~~~~~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d--------g~i~iwd~~~ 285 (371)
+++ ..+ ..|.++| +++.. .+..+ ..+..+.-++++|+..+.+ ..|.+|| .
T Consensus 185 ~~~-------~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~ 251 (347)
T 2gop_A 185 VNV-------PHREIIPQYFKFWDIYIWE--DGKEE-KMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--G 251 (347)
T ss_dssp EEE-------ECCCSSCCSSCCEEEEEEE--TTEEE-EEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--S
T ss_pred EEE-------ecccccccccccccEEEeC--CCceE-EeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--C
Confidence 333 332 2455666 55543 33334 5566653347778776644 3677777 2
Q ss_pred CCC----cceecceEE-EEecCCCCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCCeEEeeCCCCcE-EEE
Q 041206 286 TKN----NAELSSLFG-MLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAGLFFPGDASGSV-GVW 359 (371)
Q Consensus 286 ~~~----~~~~~~~~~-~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~l~~~~~dg~i-~iw 359 (371)
.+. ......+.. ..+. ++ ++++++.++.+++| +.+++......+...|.+++|+| ..+++++.++.. .+|
T Consensus 252 ~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~-~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 252 KEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE-IVVYLKETATRLRELF 327 (347)
T ss_dssp SCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS-SEEEEEECSSSCCEEE
T ss_pred CceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC-cEEEEEcCCCChHHhe
Confidence 221 111112332 4455 56 88899999999999 87665544444677899999999 855555555554 777
Q ss_pred Ecc
Q 041206 360 KWL 362 (371)
Q Consensus 360 ~~~ 362 (371)
.+.
T Consensus 328 ~~~ 330 (347)
T 2gop_A 328 TWD 330 (347)
T ss_dssp EES
T ss_pred EeC
Confidence 775
No 179
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.57 E-value=1.9e-13 Score=130.92 Aligned_cols=236 Identities=8% Similarity=-0.084 Sum_probs=153.5
Q ss_pred CccCCeEEEEEcCCCCEEE-----EEeCCCcEEEEECCCCceE-EEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCC
Q 041206 94 GHKKAVTNVGLPSGSNKLY-----SGSRDGRVSVWDRDSGRCV-NVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAAS 167 (371)
Q Consensus 94 ~h~~~V~~~~~~~~~~~l~-----s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 167 (371)
+|+..+..++|||||++|| +|+.+.+|++||+.+++.+ .... ....
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~----------------------------~~~~ 169 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI----------------------------EGGK 169 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB----------------------------SCCT
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc----------------------------Cccc
Confidence 5666799999999999998 4555678999999998864 1100 0001
Q ss_pred eeEEEEeCC--EEEEEeCCCe-------------EEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEeccccee
Q 041206 168 VNALVVNND--LLFAGSEGGV-------------ISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAV 230 (371)
Q Consensus 168 v~~~~~~~~--~l~~~~~dg~-------------v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~ 230 (371)
...++|+|+ .|+.++.+.. |++|++.++......+.....+. .+.++.|+|||+ ++.+
T Consensus 170 ~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~----- 244 (695)
T 2bkl_A 170 YATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVY----- 244 (695)
T ss_dssp TCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEE-----
T ss_pred ccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEE-----
Confidence 256789888 7777777665 99999988732112333344455 788999999997 6555
Q ss_pred eeeCCC----eEEEEECCCceEEEEeecCCCcEEEEEEc-CCeEEEEe---CCCcEEEEEccCCCC---cce-----ecc
Q 041206 231 FEFCGH----TTRTWNLDNLECVQTLKGHSDTVTSLLFW-DEYLFSSS---LDETIKIWLYTHTKN---NAE-----LSS 294 (371)
Q Consensus 231 ~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~---~dg~i~iwd~~~~~~---~~~-----~~~ 294 (371)
+.++ .|++||..+++. ..+..+...+....+. +.+++... .++.|.+||+..... ... -..
T Consensus 245 --~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 321 (695)
T 2bkl_A 245 --ILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSAS 321 (695)
T ss_dssp --EEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCE
T ss_pred --EeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCe
Confidence 4444 777887765544 3444455555555555 55334433 257899999876542 111 112
Q ss_pred eEEEEecCCCCEEEEecCCCeEEEEEcC-Ccceeeeec--CCceEEEEEeCCCC-eEE----eeCCCCcEEEEEccccce
Q 041206 295 LFGMLDAEAKPVLFSSGKDSAIRLYELP-SFKLRARIF--SRREVEVDQIGPAG-LFF----PGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 295 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~--~~~~v~~~~~s~~~-~l~----~~~~dg~i~iw~~~~~~~ 366 (371)
+..+... ++.++++...|+..++|.+. +++....+. ....+..++++|++ .++ +....+.|++||+.+++.
T Consensus 322 l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 322 LLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 3333333 45588888889988888654 344444443 25678889999998 444 333457899999987654
No 180
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.57 E-value=1.6e-11 Score=106.52 Aligned_cols=232 Identities=10% Similarity=0.028 Sum_probs=159.1
Q ss_pred ccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEee
Q 041206 66 KCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLIS 145 (371)
Q Consensus 66 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 145 (371)
..+.+.+++ ..+++.+.++.. ......++++++++..++...++.|.+||..+++....+..+...
T Consensus 62 ~~~~v~viD--------~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~----- 127 (328)
T 3dsm_A 62 NSHVIFAID--------INTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMD----- 127 (328)
T ss_dssp GGTEEEEEE--------TTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCC-----
T ss_pred CCCEEEEEE--------CcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcc-----
Confidence 456788888 456777787853 467899999998855555448999999999999988777643300
Q ss_pred cCCEEEEecCCcEEEEEeCCCCeeEEEEeCCEEEEEe--CCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCceeE
Q 041206 146 EGSWVFLGLPNAVKSWRVNAASVNALVVNNDLLFAGS--EGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTRWN 223 (371)
Q Consensus 146 ~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~ 223 (371)
.+......+++....++++. .++.|.++|+.++ +....+........++++|+++++
T Consensus 128 -----------------~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~----~~~~~i~~g~~p~~i~~~~dG~l~ 186 (328)
T 3dsm_A 128 -----------------MESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETD----KVVDELTIGIQPTSLVMDKYNKMW 186 (328)
T ss_dssp -----------------TTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTT----EEEEEEECSSCBCCCEECTTSEEE
T ss_pred -----------------ccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCC----eEEEEEEcCCCccceEEcCCCCEE
Confidence 00002445666555555555 4889999999988 666666654456788999999854
Q ss_pred ecccceeeeeCC----------CeEEEEECCCceEEEEeecC-CCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCc-
Q 041206 224 SKEEAAVFEFCG----------HTTRTWNLDNLECVQTLKGH-SDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNN- 289 (371)
Q Consensus 224 ~~~~~~~~~~~d----------g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~- 289 (371)
.+. ..+ +.|.++|..+++....+... ......++++ +++|+.+.. .|.+||....+..
T Consensus 187 v~~------~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~ 258 (328)
T 3dsm_A 187 TIT------DGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPV 258 (328)
T ss_dssp EEB------CCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCS
T ss_pred EEE------CCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceee
Confidence 430 332 78999999999988777643 2367899998 567766654 8999998765431
Q ss_pred -ce----ecceEEEEe-cCCCCEEEEe----cCCCeEEEEEcCCcceeeeecCCceEEEEEe
Q 041206 290 -AE----LSSLFGMLD-AEAKPVLFSS----GKDSAIRLYELPSFKLRARIFSRREVEVDQI 341 (371)
Q Consensus 290 -~~----~~~~~~~~~-~~~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~ 341 (371)
.. ......+.. +.++.+.++. ..++.|.+||.. ++.+.++........++|
T Consensus 259 ~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~ 319 (328)
T 3dsm_A 259 RPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCW 319 (328)
T ss_dssp SCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEE
T ss_pred eeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEE
Confidence 11 122334444 4467677776 678999999998 888887764444455554
No 181
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.56 E-value=2.3e-12 Score=113.60 Aligned_cols=234 Identities=9% Similarity=-0.020 Sum_probs=134.4
Q ss_pred cccCCCCceeeccCcc------cc-cceeEEEEEeec-cceeeeeeeeccee--eccce-----eeCC----ccceEEEE
Q 041206 13 HKHSEGGETMMSDDDD------LM-KGRAEEREEMFG-FGLAAMAIRVCNNW--ISDSC-----VYGD----KCRFLHSW 73 (371)
Q Consensus 13 ~~~sp~g~~l~~~~~d------~~-~~~~~~~~~~h~-~~v~~~~~~~~~~~--~~~~~-----~~~~----~~~~i~~~ 73 (371)
..|+|+|++|+++..+ +. .+++........ .....++++|.+.+ +.... .++. .++.+.+|
T Consensus 45 ~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~ 124 (365)
T 1jof_A 45 MTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVF 124 (365)
T ss_dssp EEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEE
T ss_pred EEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEE
Confidence 3479999988877654 22 444443322111 23556777776652 21110 0111 45678888
Q ss_pred EeccCCCCccCCceeeEeee----CccCCeEEEEEcCCCCEEEEEeC-CCcEEEEECC-CCceEE--EEeCCCeeEEEee
Q 041206 74 VHSVDGDNTTNSLATLMKLN----GHKKAVTNVGLPSGSNKLYSGSR-DGRVSVWDRD-SGRCVN--VITNGAEIGCLIS 145 (371)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~----~h~~~V~~~~~~~~~~~l~s~~~-dg~v~iwd~~-~~~~~~--~~~~~~~~~~~~~ 145 (371)
.... .+++...+. .+...+.+++|+|+|++|+++.. ++.|++||+. +++... .+...
T Consensus 125 ~~~~-------~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~-------- 189 (365)
T 1jof_A 125 SVSE-------TGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP-------- 189 (365)
T ss_dssp EECT-------TCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS--------
T ss_pred ccCC-------CCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC--------
Confidence 8432 233333332 35678999999999999887764 6799999998 676532 12100
Q ss_pred cCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeC-CCeEEEEeccCCCCccee-eEEEe-------cCc-----
Q 041206 146 EGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSE-GGVISVWKGTFVANPFKQ-VASIR-------APL----- 209 (371)
Q Consensus 146 ~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~-dg~v~iwd~~~~~~~~~~-~~~~~-------~~~----- 209 (371)
.+...+..++|+|+ ++++++. ++.|.+|++......... ...+. ++.
T Consensus 190 -----------------~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 252 (365)
T 1jof_A 190 -----------------DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGK 252 (365)
T ss_dssp -----------------STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSS
T ss_pred -----------------CCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccc
Confidence 01234788999998 6666664 789999987532111111 11222 112
Q ss_pred --ceEEEE-ecCCce-eEecccceeeeeC-CC-----eEEEEECC-CceEEE---EeecCCCcEEEEEEc-----CCeEE
Q 041206 210 --WFCSLS-SSNDTR-WNSKEEAAVFEFC-GH-----TTRTWNLD-NLECVQ---TLKGHSDTVTSLLFW-----DEYLF 270 (371)
Q Consensus 210 --~v~~~~-~~~~~~-l~~~~~~~~~~~~-dg-----~i~iwd~~-~~~~~~---~~~~~~~~v~~~~~~-----~~~l~ 270 (371)
.+..++ |+|||+ ++++ .. ++ .|.+|++. +++... ....+...+..++|+ +++|+
T Consensus 253 ~~~~~~i~~~spdG~~l~v~-------~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~ 325 (365)
T 1jof_A 253 GLYRADVCALTFSGKYMFAS-------SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMA 325 (365)
T ss_dssp BSEEEEEEEECTTSSEEEEE-------EEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEE
T ss_pred ccccccEEEECCCCCEEEEE-------CCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEE
Confidence 378899 999997 5555 43 23 89999996 565433 122233333444443 34565
Q ss_pred EEeCC-CcEEEEEccC
Q 041206 271 SSSLD-ETIKIWLYTH 285 (371)
Q Consensus 271 s~~~d-g~i~iwd~~~ 285 (371)
+++.+ +.|++|++..
T Consensus 326 v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 326 ITDDQEGWLEIYRWKD 341 (365)
T ss_dssp EECSSSCEEEEEEEET
T ss_pred EEEcCCCeEEEEEEch
Confidence 55543 6666666544
No 182
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.56 E-value=4.9e-12 Score=106.71 Aligned_cols=203 Identities=12% Similarity=0.018 Sum_probs=145.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC-EEEEEeCCC
Q 041206 107 GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND-LLFAGSEGG 185 (371)
Q Consensus 107 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~-~l~~~~~dg 185 (371)
.+++|++++.|+.|.+||.++|+.+.++..+.. ..+.++.+.|+ .+++ +.++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~--------------------------~~~~~~~~~pdG~ilv-s~~~ 56 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG--------------------------WECNSVAATKAGEILF-SYSK 56 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT--------------------------CCCCEEEECTTSCEEE-ECBS
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc--------------------------CCCcCeEECCCCCEEE-eCCC
Confidence 357999999999999999999999988875320 13677888887 3333 5578
Q ss_pred eEEEEeccCCCCcceeeEEEecC-c-ceEEEEecCCce-eEecccceeeeeC-CCeEEEEECCCceEEEEeec------C
Q 041206 186 VISVWKGTFVANPFKQVASIRAP-L-WFCSLSSSNDTR-WNSKEEAAVFEFC-GHTTRTWNLDNLECVQTLKG------H 255 (371)
Q Consensus 186 ~v~iwd~~~~~~~~~~~~~~~~~-~-~v~~~~~~~~~~-l~~~~~~~~~~~~-dg~i~iwd~~~~~~~~~~~~------~ 255 (371)
.|..||. ++ +.+..+..+ . .+.++.+.++|+ +++. +. ++.+..+|. +++.+..+.. +
T Consensus 57 ~V~~~d~-~G----~~~W~~~~~~~~~~~~~~~~~dG~~lv~~-------~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~ 123 (276)
T 3no2_A 57 GAKMITR-DG----RELWNIAAPAGCEMQTARILPDGNALVAW-------CGHPSTILEVNM-KGEVLSKTEFETGIERP 123 (276)
T ss_dssp EEEEECT-TS----CEEEEEECCTTCEEEEEEECTTSCEEEEE-------ESTTEEEEEECT-TSCEEEEEEECCSCSSG
T ss_pred CEEEECC-CC----CEEEEEcCCCCccccccEECCCCCEEEEe-------cCCCCEEEEEeC-CCCEEEEEeccCCCCcc
Confidence 8999999 66 677777765 3 788999999997 5555 55 678888886 6777766642 2
Q ss_pred CCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCccee---cceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeee
Q 041206 256 SDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAEL---SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARI 330 (371)
Q Consensus 256 ~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 330 (371)
......+++. ++++++...++.|..||.. .+..-.. .........+++++++++..++.|..+|..+++.+.++
T Consensus 124 ~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~ 202 (276)
T 3no2_A 124 HAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRV 202 (276)
T ss_dssp GGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred cccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence 1233344454 7899999999999999976 4431111 11222333455568888888889999999999998888
Q ss_pred cCC-------ceEEEEEeCCCC-eEEee
Q 041206 331 FSR-------REVEVDQIGPAG-LFFPG 350 (371)
Q Consensus 331 ~~~-------~~v~~~~~s~~~-~l~~~ 350 (371)
... ..+..+...++| .+++.
T Consensus 203 ~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 203 NANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp EGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred cCCCCCCccccccccceEcCCCCEEEEe
Confidence 531 237889999999 55554
No 183
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.55 E-value=2.4e-12 Score=114.46 Aligned_cols=220 Identities=8% Similarity=-0.070 Sum_probs=132.4
Q ss_pred eeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 041206 45 LAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWD 124 (371)
Q Consensus 45 v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd 124 (371)
+..++++|.+.++...... .....+++|+ ..+++......++......+.|+||+++|+.++.++.|++||
T Consensus 38 ~~~~~~SpdG~~l~~~~~~-~g~~~l~~~d--------~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d 108 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDF-DGNRNYYLLN--------LETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVD 108 (396)
T ss_dssp TTSCCBCTTSCEEEEEECT-TSSCEEEEEE--------TTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEE
T ss_pred eecCcCCCCCCEEEEEEec-CCCceEEEEE--------CCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEE
Confidence 6677888877654422221 2234567766 233444433333333333478999999999999999999999
Q ss_pred CCCCceEEEEeCCCee-E---------------------EEeecCCEEEE------ecCCcEEEEEeCCC----------
Q 041206 125 RDSGRCVNVITNGAEI-G---------------------CLISEGSWVFL------GLPNAVKSWRVNAA---------- 166 (371)
Q Consensus 125 ~~~~~~~~~~~~~~~~-~---------------------~~~~~~~~~~~------~~~~~i~~~~~~~~---------- 166 (371)
+.+++.......+... . .+.++++.++. ..+..|.+||+.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~ 188 (396)
T 3c5m_A 109 LETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTA 188 (396)
T ss_dssp TTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESS
T ss_pred CCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCc
Confidence 9988876655533211 0 01122332221 23446777777665
Q ss_pred CeeEEEEeC-C--EEEEEeCC------CeEEEEeccCCCCcceeeEEEecC-c-ceEEEEecCCce-eEecccceeeeeC
Q 041206 167 SVNALVVNN-D--LLFAGSEG------GVISVWKGTFVANPFKQVASIRAP-L-WFCSLSSSNDTR-WNSKEEAAVFEFC 234 (371)
Q Consensus 167 ~v~~~~~~~-~--~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~~-~-~v~~~~~~~~~~-l~~~~~~~~~~~~ 234 (371)
.+..+.|+| + .++..+.+ ..|.+||+... +........ . .+..++|+||++ |+.. +.
T Consensus 189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~----~~~~l~~~~~~~~~~~~~~spdg~~l~~~-------~~ 257 (396)
T 3c5m_A 189 WLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS----NVRKIKEHAEGESCTHEFWIPDGSAMAYV-------SY 257 (396)
T ss_dssp CEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC----CCEESSCCCTTEEEEEEEECTTSSCEEEE-------EE
T ss_pred ccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC----ceeEeeccCCCccccceEECCCCCEEEEE-------ec
Confidence 466788998 4 45555543 36888888665 222112222 3 688899999996 5554 33
Q ss_pred C-----CeEEEEECCCceEEEEeecCCCcEEEEEEc---CCeEEEEe----------------CCCcEEEEEccCCC
Q 041206 235 G-----HTTRTWNLDNLECVQTLKGHSDTVTSLLFW---DEYLFSSS----------------LDETIKIWLYTHTK 287 (371)
Q Consensus 235 d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~----------------~dg~i~iwd~~~~~ 287 (371)
+ +.|++||+.+++....... .. .. +.|+ ++++++++ .+..|++||+...+
T Consensus 258 ~~~~~~~~l~~~d~~~g~~~~l~~~-~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 258 FKGQTDRVIYKANPETLENEEVMVM-PP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp ETTTCCEEEEEECTTTCCEEEEEEC-CS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred CCCCccceEEEEECCCCCeEEeeeC-CC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence 3 5599999998765433221 11 22 6665 45666654 34789999987654
No 184
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.53 E-value=3e-11 Score=102.50 Aligned_cols=229 Identities=9% Similarity=0.144 Sum_probs=148.2
Q ss_pred cceeeeeeeecce-eeccceeeCCccceEEEEEeccCCCCccCCceeeEeee------CccCCeEEEEE-cCCCCEEEEE
Q 041206 43 FGLAAMAIRVCNN-WISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLN------GHKKAVTNVGL-PSGSNKLYSG 114 (371)
Q Consensus 43 ~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~------~h~~~V~~~~~-~~~~~~l~s~ 114 (371)
.....+++.+... |+. +...+.|..|+ ..++.+..+. +|...+.++++ .++++++++.
T Consensus 30 ~~p~~v~~~~~g~l~v~-----~~~~~~i~~~d---------~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~ 95 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVA-----DTNNHRIQIFD---------KEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTE 95 (286)
T ss_dssp SCEEEEEECTTCCEEEE-----EGGGTEEEEEC---------TTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEE
T ss_pred CCCceEEECCCCCEEEE-----ECCCCEEEEEC---------CCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEc
Confidence 4455666666443 332 33456788887 2244555553 35567999999 5677776666
Q ss_pred eC-CCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCCeEEEEe
Q 041206 115 SR-DGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGGVISVWK 191 (371)
Q Consensus 115 ~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg~v~iwd 191 (371)
.. ++.|++|| .+++.+..+... ....+.+++++++ ++++...++.|.+||
T Consensus 96 ~~~~~~i~~~d-~~g~~~~~~~~~--------------------------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 148 (286)
T 1q7f_A 96 RSPTHQIQIYN-QYGQFVRKFGAT--------------------------ILQHPRGVTVDNKGRIIVVECKVMRVIIFD 148 (286)
T ss_dssp CGGGCEEEEEC-TTSCEEEEECTT--------------------------TCSCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred CCCCCEEEEEC-CCCcEEEEecCc--------------------------cCCCceEEEEeCCCCEEEEECCCCEEEEEc
Confidence 43 88999999 667766655421 1124788899887 555556688999999
Q ss_pred ccCCCCcceeeEEEe--cCc-ceEEEEecCCcee-EecccceeeeeCCCeEEEEECCCceEEEEeecC--CCcEEEEEEc
Q 041206 192 GTFVANPFKQVASIR--APL-WFCSLSSSNDTRW-NSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGH--SDTVTSLLFW 265 (371)
Q Consensus 192 ~~~~~~~~~~~~~~~--~~~-~v~~~~~~~~~~l-~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~ 265 (371)
... +.+..+. .+. .+.++++++++++ ++. ..++.|++||.. ++.+..+..+ ...+..++++
T Consensus 149 ~~g-----~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~-------~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d 215 (286)
T 1q7f_A 149 QNG-----NVLHKFGCSKHLEFPNGVVVNDKQEIFISD-------NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGIN 215 (286)
T ss_dssp TTS-----CEEEEEECTTTCSSEEEEEECSSSEEEEEE-------GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEEC
T ss_pred CCC-----CEEEEeCCCCccCCcEEEEECCCCCEEEEE-------CCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEEC
Confidence 653 3444444 233 7899999999984 555 568999999985 5566666433 3578899998
Q ss_pred --CCeEEEEeCCC-cEEEEEccCCCCc-----ceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcce
Q 041206 266 --DEYLFSSSLDE-TIKIWLYTHTKNN-----AELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKL 326 (371)
Q Consensus 266 --~~~l~s~~~dg-~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 326 (371)
++++++...++ .|.+||....... ........+...++++++++ +.++.|++|++....+
T Consensus 216 ~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 216 SNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp TTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred CCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence 56777777775 9999995432110 00111233444455545555 5789999999866443
No 185
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.51 E-value=2.3e-12 Score=124.37 Aligned_cols=237 Identities=11% Similarity=-0.060 Sum_probs=147.2
Q ss_pred CccCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCe
Q 041206 94 GHKKAVTNVGLPSGSNKLYSGSRD-----GRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASV 168 (371)
Q Consensus 94 ~h~~~V~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v 168 (371)
+|...+..++|||||++||.++.+ ..|++||+.+++.+....... .+
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~----------------------------~~ 211 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWV----------------------------KF 211 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEE----------------------------ES
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCc----------------------------ee
Confidence 344578899999999999887643 369999999998754311100 12
Q ss_pred eEEEEeCC-EEEEEeCCC--------------eEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceee
Q 041206 169 NALVVNND-LLFAGSEGG--------------VISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVF 231 (371)
Q Consensus 169 ~~~~~~~~-~l~~~~~dg--------------~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~ 231 (371)
..++|+|+ .|+.++.++ .|++|++.++......+.....+. .+..+.|+|||+ ++..
T Consensus 212 ~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~------ 285 (741)
T 1yr2_A 212 SGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVIT------ 285 (741)
T ss_dssp CCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE------
T ss_pred ccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEE------
Confidence 45667766 555555443 488999877632112222222333 588999999996 5554
Q ss_pred eeC-----CCeEEEEECCCc--eEEEEeecCCCcEEEEEEc-CCeEEEEeC----CCcEEEEEccCCC-C-c----ceec
Q 041206 232 EFC-----GHTTRTWNLDNL--ECVQTLKGHSDTVTSLLFW-DEYLFSSSL----DETIKIWLYTHTK-N-N----AELS 293 (371)
Q Consensus 232 ~~~-----dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~-~~~l~s~~~----dg~i~iwd~~~~~-~-~----~~~~ 293 (371)
+. ...|++||+.++ ++...+..+...+....+. ++.|+..+. ++.|.+||+.... . . ....
T Consensus 286 -~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~ 364 (741)
T 1yr2_A 286 -SSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKD 364 (741)
T ss_dssp -EECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSS
T ss_pred -EEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCC
Confidence 43 348999999876 3145555555544444334 777776665 3459999987642 1 0 0001
Q ss_pred ceEEEEecCCCCEEEEecCCCeEEEEEcC-Ccceeeeec--CCceEEEEEeCCCC-eEE----eeCCCCcEEEEEccccc
Q 041206 294 SLFGMLDAEAKPVLFSSGKDSAIRLYELP-SFKLRARIF--SRREVEVDQIGPAG-LFF----PGDASGSVGVWKWLLAE 365 (371)
Q Consensus 294 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~--~~~~v~~~~~s~~~-~l~----~~~~dg~i~iw~~~~~~ 365 (371)
.+..+... ++.++++...|+..+||.+. ++.....+. ....+..+.++|++ .|+ +....+.|++||+.+++
T Consensus 365 ~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 365 NLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred eEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 22222233 44478888888887777554 344444443 36788999999998 444 33346799999998765
Q ss_pred e
Q 041206 366 Q 366 (371)
Q Consensus 366 ~ 366 (371)
.
T Consensus 444 ~ 444 (741)
T 1yr2_A 444 T 444 (741)
T ss_dssp E
T ss_pred E
Confidence 3
No 186
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.51 E-value=7.2e-10 Score=94.32 Aligned_cols=257 Identities=9% Similarity=0.060 Sum_probs=162.7
Q ss_pred eeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE-e-CCCeeEEEee--cCCEEEEec-CCcEEEEEeC-
Q 041206 91 KLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI-T-NGAEIGCLIS--EGSWVFLGL-PNAVKSWRVN- 164 (371)
Q Consensus 91 ~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~-~~~~~~~~~~--~~~~~~~~~-~~~i~~~~~~- 164 (371)
.+..+...+.+++++++++++++...++.|.+||.. ++..... . ....+..+.. ++.+.++.. ++.|..|+..
T Consensus 9 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g 87 (299)
T 2z2n_A 9 NLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG 87 (299)
T ss_dssp ECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS
T ss_pred cCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC
Confidence 344566789999999999988877768899999988 6544322 1 1234555554 455555544 5667766643
Q ss_pred ----------CCCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeE-EEecCc-ceEEEEecCCceeEeccccee
Q 041206 165 ----------AASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVA-SIRAPL-WFCSLSSSNDTRWNSKEEAAV 230 (371)
Q Consensus 165 ----------~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~-~v~~~~~~~~~~l~~~~~~~~ 230 (371)
...+.+++++++ ++++...++.|..||. ++ +... ...... .+..+++.+++.++.+
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g----~~~~~~~~~~~~~~~~i~~~~~g~l~v~----- 157 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DG----KIREYELPNKGSYPSFITLGSDNALWFT----- 157 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC----CEEEEECSSTTCCEEEEEECTTSCEEEE-----
T ss_pred cEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CC----CEEEecCCCCCCCCceEEEcCCCCEEEE-----
Confidence 125778888876 4444456789999998 43 2221 222233 7899999999885544
Q ss_pred eeeCCCeEEEEECCCceEEEE-eecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCcc-----eecceEEEEecC
Q 041206 231 FEFCGHTTRTWNLDNLECVQT-LKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNA-----ELSSLFGMLDAE 302 (371)
Q Consensus 231 ~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~ 302 (371)
...++.|..||. +++.... +..+...+.+++++ +++.++...++.|.+||. ...... .......+...+
T Consensus 158 -~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~ 234 (299)
T 2z2n_A 158 -ENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGA 234 (299)
T ss_dssp -ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS
T ss_pred -eCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECC
Confidence 045689999999 6665432 33345568889998 455555556788999997 332111 112344455555
Q ss_pred CCCEEEEecCCCeEEEEEcCCcceeeee--c-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccc
Q 041206 303 AKPVLFSSGKDSAIRLYELPSFKLRARI--F-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 303 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~ 365 (371)
++.+.++...++.|..||.. ++. ..+ . +...+.++++ +++ ++++.. .+.|..++..+.+
T Consensus 235 ~g~l~v~~~~~~~i~~~d~~-g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 235 GIDLWFTEWGANKIGRLTSN-NII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp TTCEEEEETTTTEEEEEETT-TEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred CCCEEEeccCCceEEEECCC-Cce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 55566666677899999984 432 222 1 2467899999 888 544444 5677777876643
No 187
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.51 E-value=1.4e-12 Score=124.21 Aligned_cols=232 Identities=8% Similarity=-0.071 Sum_probs=151.8
Q ss_pred EeeeCccCCeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCC
Q 041206 90 MKLNGHKKAVTNVGLPSGSNKLYSG--SRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAAS 167 (371)
Q Consensus 90 ~~l~~h~~~V~~~~~~~~~~~l~s~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 167 (371)
..+.+|...|..++|+++.-++++. +.++...||....+.....+..+. ..
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~---------------------------~~ 69 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAP---------------------------WN 69 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTT---------------------------CC
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCC---------------------------cc
Confidence 4567899999999999887777777 568899999965444444443221 11
Q ss_pred ee---------EEEEe--CC--E-EEEEeC-CCeEEEEecc--C-CCCcceeeEEEec-----Cc-ceEEEEecCCce-e
Q 041206 168 VN---------ALVVN--ND--L-LFAGSE-GGVISVWKGT--F-VANPFKQVASIRA-----PL-WFCSLSSSNDTR-W 222 (371)
Q Consensus 168 v~---------~~~~~--~~--~-l~~~~~-dg~v~iwd~~--~-~~~~~~~~~~~~~-----~~-~v~~~~~~~~~~-l 222 (371)
+. ...++ |+ . |+..+. +..|.++++. . + + ...+.. +. .+.+++|+|||+ |
T Consensus 70 ~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~----~-~~~l~~~~~~~~~~~~~~~~~spDg~~l 144 (662)
T 3azo_A 70 VRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGA----V-PRPLTPVSAVGGGLRWADPVLLPERGEV 144 (662)
T ss_dssp BCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCC----C-CEECSCCCCSTTCEEEEEEEEETTTTEE
T ss_pred ccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCC----C-CEeccCCccCCCCccccCcEECCCCCEE
Confidence 22 34444 55 5 555443 5667777776 2 3 2 223333 45 889999999996 7
Q ss_pred EecccceeeeeCC----------CeEEEEECCC------ceEEEEee-cCCCcEEEEEEc--CCeEEEEeCC--------
Q 041206 223 NSKEEAAVFEFCG----------HTTRTWNLDN------LECVQTLK-GHSDTVTSLLFW--DEYLFSSSLD-------- 275 (371)
Q Consensus 223 ~~~~~~~~~~~~d----------g~i~iwd~~~------~~~~~~~~-~~~~~v~~~~~~--~~~l~s~~~d-------- 275 (371)
+.+ +.+ ..|++||+.+ ++. ..+. .+...+..++|+ +++|+.++.+
T Consensus 145 ~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~ 216 (662)
T 3azo_A 145 WCM-------AEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEG 216 (662)
T ss_dssp EEE-------EEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTC
T ss_pred EEE-------EecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCC
Confidence 766 655 5899999988 554 3444 556778888998 6788877755
Q ss_pred CcEEEEEcc-CC---CCcce----ecceEEEEecCCCCEEEEecCCC--eEEEEEcCCcceeeeecCCce---------E
Q 041206 276 ETIKIWLYT-HT---KNNAE----LSSLFGMLDAEAKPVLFSSGKDS--AIRLYELPSFKLRARIFSRRE---------V 336 (371)
Q Consensus 276 g~i~iwd~~-~~---~~~~~----~~~~~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~---------v 336 (371)
..|++||+. .. +.... ...+....+.+++++++++..++ .|.+||+.+++......+... +
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~ 296 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGM 296 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTC
T ss_pred cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccC
Confidence 379999998 34 21111 12333444555555888888888 677777666654433322211 4
Q ss_pred EEEEeCCCC-eEEeeCCCCcEEEEEcc
Q 041206 337 EVDQIGPAG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 337 ~~~~~s~~~-~l~~~~~dg~i~iw~~~ 362 (371)
..++|+|++ ++++++. +.+++|.+.
T Consensus 297 ~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 297 RWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp CSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred ceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 678899999 8888888 999999543
No 188
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.50 E-value=1.8e-10 Score=101.36 Aligned_cols=255 Identities=8% Similarity=-0.077 Sum_probs=162.5
Q ss_pred eEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceEEEEeCCC
Q 041206 69 FLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGS----------RDGRVSVWDRDSGRCVNVITNGA 138 (371)
Q Consensus 69 ~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~ 138 (371)
.+.+++ ..+++.+.++.....+ .++++||+++|+.+. .++.|.+||..+.+.+.++....
T Consensus 48 ~v~v~D--------~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~ 117 (373)
T 2mad_H 48 QQWVLD--------AGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD 117 (373)
T ss_pred EEEEEE--------CCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCC
Confidence 556666 3456677777755554 999999999999886 36789999999998888776431
Q ss_pred eeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeC--CCeEEEEeccCCCCcceeeEE-EecCcceEE
Q 041206 139 EIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSE--GGVISVWKGTFVANPFKQVAS-IRAPLWFCS 213 (371)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~--dg~v~iwd~~~~~~~~~~~~~-~~~~~~v~~ 213 (371)
.... ........+.++|+ +|+++.. ++.|.++| .++ +.... +.... +
T Consensus 118 ~~~~--------------------~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~----~~~~~~i~~~~---~ 169 (373)
T 2mad_H 118 APRF--------------------DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGG----SSDDQLLSSPT---C 169 (373)
T ss_pred cccc--------------------ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCC----CEEeEEcCCCc---e
Confidence 0000 00012456788887 7777664 57899999 887 55555 43322 2
Q ss_pred EEecCCc--eeEecccceeeeeCCCeEEEEECCCceEEEEee-----cCCCcE-EEEEEc--CCeEEEEeCCCcEEEEEc
Q 041206 214 LSSSNDT--RWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLK-----GHSDTV-TSLLFW--DEYLFSSSLDETIKIWLY 283 (371)
Q Consensus 214 ~~~~~~~--~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v-~~~~~~--~~~l~s~~~dg~i~iwd~ 283 (371)
+.+.|++ .+++. +.||.+.++|. +++.+.... ....++ ....+. +..++..+..+.+.+.|+
T Consensus 170 ~~~~~~~~~~~~~~-------~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~ 241 (373)
T 2mad_H 170 YHIHPGAPSTFYLL-------CAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADI 241 (373)
T ss_pred EEEEeCCCceEEEE-------cCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEec
Confidence 4445555 25666 78999999999 877663322 111222 122233 333333346778888887
Q ss_pred cCCCCc--ce--------------ecceEEEEecCCCCEEEEecC----------CCeEEEEEcCCcceeeeecCCceEE
Q 041206 284 THTKNN--AE--------------LSSLFGMLDAEAKPVLFSSGK----------DSAIRLYELPSFKLRARIFSRREVE 337 (371)
Q Consensus 284 ~~~~~~--~~--------------~~~~~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~v~ 337 (371)
...... .. ......+...+++..+++... .+.|.++|+.+++.+.++.......
T Consensus 242 ~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~ 321 (373)
T 2mad_H 242 SAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVD 321 (373)
T ss_pred cCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcC
Confidence 543210 00 011111222333335554432 3589999999999998887667789
Q ss_pred EEEeCCCC--eEEeeC-CCCcEEEEEccccceecc
Q 041206 338 VDQIGPAG--LFFPGD-ASGSVGVWKWLLAEQQKM 369 (371)
Q Consensus 338 ~~~~s~~~--~l~~~~-~dg~i~iw~~~~~~~~~~ 369 (371)
.++|+||| +++++. .++.|.+||..+.+..+.
T Consensus 322 ~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 322 AISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred eEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 99999999 566666 589999999998776543
No 189
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.50 E-value=3.5e-11 Score=104.43 Aligned_cols=209 Identities=15% Similarity=0.125 Sum_probs=137.6
Q ss_pred cceeeeeeeecce-eeccceeeCCccceEEEEEeccCCCCccCCceeeEee---------eCccCCeEEEEEcC-CCCEE
Q 041206 43 FGLAAMAIRVCNN-WISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKL---------NGHKKAVTNVGLPS-GSNKL 111 (371)
Q Consensus 43 ~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l---------~~h~~~V~~~~~~~-~~~~l 111 (371)
.....+++.+... |+. +.....|..|+. ......+..+ .++-.....++++| +++++
T Consensus 91 ~~p~gia~d~~g~l~v~-----d~~~~~v~~~~~-------~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~ly 158 (329)
T 3fvz_A 91 YLPHGLSIDTDGNYWVT-----DVALHQVFKLDP-------HSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVF 158 (329)
T ss_dssp SSEEEEEECTTSCEEEE-----ETTTTEEEEECT-------TCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEE
T ss_pred CCceEEEECCCCCEEEE-----ECCCCEEEEEeC-------CCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEE
Confidence 3455566665443 222 344566777771 1111144444 35566799999999 78888
Q ss_pred EEEe-CCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC---EEEEEeCCCeE
Q 041206 112 YSGS-RDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND---LLFAGSEGGVI 187 (371)
Q Consensus 112 ~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~---~l~~~~~dg~v 187 (371)
++.+ .++.|++|+ .+++.+..+.....-. .. ..+ +-.....++++++ ++++...++.|
T Consensus 159 v~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~--~~--------~~~-------~~~~p~gia~d~~~g~l~v~d~~~~~I 220 (329)
T 3fvz_A 159 VSDGYCNSRIVQFS-PSGKFVTQWGEESSGS--SP--------RPG-------QFSVPHSLALVPHLDQLCVADRENGRI 220 (329)
T ss_dssp EEECSSCCEEEEEC-TTSCEEEEECEECCSS--SC--------CTT-------EESCEEEEEEETTTTEEEEEETTTTEE
T ss_pred EEeCCCCCeEEEEc-CCCCEEEEeccCCCCC--CC--------CCc-------ccCCCcEEEEECCCCEEEEEECCCCEE
Confidence 8886 689999999 5677666553211000 00 000 0013788999875 55566678899
Q ss_pred EEEeccCCCCcceeeEEEec--Cc-ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEEee---cCCCcEE
Q 041206 188 SVWKGTFVANPFKQVASIRA--PL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLK---GHSDTVT 260 (371)
Q Consensus 188 ~iwd~~~~~~~~~~~~~~~~--~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~ 260 (371)
++||..++ +.+..+.. +. .+.+++++| +. +.+.+...+....+..|++||..+++.+..+. ++.....
T Consensus 221 ~~~~~~~G----~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~ 295 (329)
T 3fvz_A 221 QCFKTDTK----EFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPH 295 (329)
T ss_dssp EEEETTTC----CEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEE
T ss_pred EEEECCCC----cEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCee
Confidence 99999866 66666643 33 788999999 54 33333333333667799999999999988874 5667788
Q ss_pred EEEEc--CCeEEEEeCCCcEEEEEccCC
Q 041206 261 SLLFW--DEYLFSSSLDETIKIWLYTHT 286 (371)
Q Consensus 261 ~~~~~--~~~l~s~~~dg~i~iwd~~~~ 286 (371)
+++++ ++++++...++.|++|++...
T Consensus 296 ~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 296 DIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred EEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 99998 557777888899999987653
No 190
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.46 E-value=1.5e-11 Score=106.81 Aligned_cols=226 Identities=9% Similarity=-0.003 Sum_probs=146.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC
Q 041206 97 KAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND 176 (371)
Q Consensus 97 ~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~ 176 (371)
..|.+++|++++..++..+.++.++.| .++....+... ...+.+++|+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---------------------------~~~~~~~~~~~~ 55 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKK---------------------------GLQLEGLNFDRQ 55 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESS---------------------------CCCEEEEEECTT
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEecc---------------------------CccccCcEECCC
Confidence 457788899988888887888899999 34444444321 223678888887
Q ss_pred --EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeee-CC----CeEEEEECCCceE
Q 041206 177 --LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEF-CG----HTTRTWNLDNLEC 248 (371)
Q Consensus 177 --~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~-~d----g~i~iwd~~~~~~ 248 (371)
+++++..++.|.+||..++ +.......+. .+.+++++++++++.+ . .+ +.|.+||..+++.
T Consensus 56 g~l~~~~~~~~~i~~~d~~~~----~~~~~~~~~~~~~~~i~~~~dg~l~v~-------~~~~~~~~~~i~~~d~~~~~~ 124 (333)
T 2dg1_A 56 GQLFLLDVFEGNIFKINPETK----EIKRPFVSHKANPAAIKIHKDGRLFVC-------YLGDFKSTGGIFAATENGDNL 124 (333)
T ss_dssp SCEEEEETTTCEEEEECTTTC----CEEEEEECSSSSEEEEEECTTSCEEEE-------ECTTSSSCCEEEEECTTSCSC
T ss_pred CCEEEEECCCCEEEEEeCCCC----cEEEEeeCCCCCcceEEECCCCcEEEE-------eCCCCCCCceEEEEeCCCCEE
Confidence 5566778899999999876 4333333444 8999999999985444 3 34 5899999988765
Q ss_pred EEEee--cCCCcEEEEEEc--CCeEEEEeC------CCcEEEEEccCCCCcc---eecceEEEEecCCCCE-EEEecCCC
Q 041206 249 VQTLK--GHSDTVTSLLFW--DEYLFSSSL------DETIKIWLYTHTKNNA---ELSSLFGMLDAEAKPV-LFSSGKDS 314 (371)
Q Consensus 249 ~~~~~--~~~~~v~~~~~~--~~~l~s~~~------dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~-l~~~~~d~ 314 (371)
...+. .+...+.+++++ ++++++... .+.|..+|....+... .......+...+++.. +++...++
T Consensus 125 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~ 204 (333)
T 2dg1_A 125 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTAN 204 (333)
T ss_dssp EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGT
T ss_pred EEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCC
Confidence 43332 244578899998 455555443 2445555543322111 1122334445555544 45556688
Q ss_pred eEEEEEcCC-cceeee--------ecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEccc
Q 041206 315 AIRLYELPS-FKLRAR--------IFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 315 ~i~iwd~~~-~~~~~~--------~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~ 363 (371)
.|.+||+.+ +..... +.....+..++++++| ++++...++.|.+|+...
T Consensus 205 ~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g 263 (333)
T 2dg1_A 205 RLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG 263 (333)
T ss_dssp EEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred eEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCC
Confidence 999999964 332211 1112478899999999 666666788999999853
No 191
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.45 E-value=1.9e-10 Score=101.70 Aligned_cols=272 Identities=9% Similarity=0.049 Sum_probs=172.5
Q ss_pred CccceEEEEEeccCCCCccCCceeeEeeeCc---------cCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 041206 65 DKCRFLHSWVHSVDGDNTTNSLATLMKLNGH---------KKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVIT 135 (371)
Q Consensus 65 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h---------~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 135 (371)
..++.+..++ ..+++.+..+... ...+.+. ...++..++.++.++.|..+|..+|+.+....
T Consensus 60 ~~~g~v~a~d--------~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 60 DRAGLVKALN--------ADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp CTTSEEEEEE--------TTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred cCCCeEEEEE--------ccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 3455677776 3455666555542 1223222 22245678888899999999999999988877
Q ss_pred CCCeeE--EEeecCCEEEEecCCcEEEEEeCCCCee----------------EEEEeCCEEEEEeCCCeEEEEeccCCCC
Q 041206 136 NGAEIG--CLISEGSWVFLGLPNAVKSWRVNAASVN----------------ALVVNNDLLFAGSEGGVISVWKGTFVAN 197 (371)
Q Consensus 136 ~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~v~----------------~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 197 (371)
....+. ....++..++...++.+..+|..++.+. ......+.+++++.++.+..+|..++
T Consensus 131 ~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG-- 208 (376)
T 3q7m_A 131 VAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQG-- 208 (376)
T ss_dssp CSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTC--
T ss_pred CCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCC--
Confidence 654322 1223444444456788888888777321 12233347888889999999999988
Q ss_pred cceeeEEEecCcc-----eEE---EEecC---CceeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEcC
Q 041206 198 PFKQVASIRAPLW-----FCS---LSSSN---DTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWD 266 (371)
Q Consensus 198 ~~~~~~~~~~~~~-----v~~---~~~~~---~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 266 (371)
+.+-......+ +.. +...| ++.++.+ +.++.+..+|.++++.+..... .....+...+
T Consensus 209 --~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~-------~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~~ 277 (376)
T 3q7m_A 209 --QMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFAL-------AYNGNLTALDLRSGQIMWKREL--GSVNDFIVDG 277 (376)
T ss_dssp --CEEEEEECCC-----------CCCCCCEEETTEEEEE-------CTTSCEEEEETTTCCEEEEECC--CCEEEEEEET
T ss_pred --cEEEEEecccCCCCcccccccccCCCcEEECCEEEEE-------ecCcEEEEEECCCCcEEeeccC--CCCCCceEEC
Confidence 44444332210 000 11111 3456666 8899999999999998766542 3455666668
Q ss_pred CeEEEEeCCCcEEEEEccCCCCcceec-----ceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecC-CceEEEEE
Q 041206 267 EYLFSSSLDETIKIWLYTHTKNNAELS-----SLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFS-RREVEVDQ 340 (371)
Q Consensus 267 ~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~ 340 (371)
..++.++.++.+..+|..+.+..-... ....... .++ .++.++.+|.|..+|..+++.+..... ...+....
T Consensus 278 ~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~-~~~-~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~ 355 (376)
T 3q7m_A 278 NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL-YNG-NLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEP 355 (376)
T ss_dssp TEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE-ETT-EEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCC
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE-ECC-EEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCC
Confidence 888889999999999987665321110 0111111 123 788889999999999999998877653 23322211
Q ss_pred eCCCCeEEeeCCCCcEEEEE
Q 041206 341 IGPAGLFFPGDASGSVGVWK 360 (371)
Q Consensus 341 ~s~~~~l~~~~~dg~i~iw~ 360 (371)
...++.|+.++.+|.|+.|+
T Consensus 356 ~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 356 VAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEETTEEEEEBTTSCEEEEE
T ss_pred EEECCEEEEEeCCCEEEEEe
Confidence 11245788888999999986
No 192
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.45 E-value=2.6e-10 Score=101.81 Aligned_cols=228 Identities=12% Similarity=0.056 Sum_probs=152.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC
Q 041206 97 KAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND 176 (371)
Q Consensus 97 ~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~ 176 (371)
.....++|+++++++++...++.|++||..+++......... ... ++++++
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~----------------------------~~~-ia~~~~ 181 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK----------------------------GGK-PAVTKD 181 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC----------------------------BCB-CEECTT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC----------------------------CCc-eeEecC
Confidence 468899999999988887778999999998877665444311 133 777776
Q ss_pred --EEEEEeCCC--eEEEEeccCCCCcceeeEEEec-Cc-ceEEEEecC-CceeEecccceeeeeCCCeEEEEECCCceEE
Q 041206 177 --LLFAGSEGG--VISVWKGTFVANPFKQVASIRA-PL-WFCSLSSSN-DTRWNSKEEAAVFEFCGHTTRTWNLDNLECV 249 (371)
Q Consensus 177 --~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~-~~-~v~~~~~~~-~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~ 249 (371)
.|+++..++ .|.+++....... ..+..+.. .. .+.+++++| ++.|+.+ ..++.|+.||..++...
T Consensus 182 g~~l~~~d~~~~~~I~~~d~~~~~~~-~~~g~~~~~~~~~p~~iav~p~~g~lyv~-------d~~~~I~~~d~~~~~~~ 253 (409)
T 3hrp_A 182 KQRVYSIGWEGTHTVYVYMKASGWAP-TRIGQLGSTFSGKIGAVALDETEEWLYFV-------DSNKNFGRFNVKTQEVT 253 (409)
T ss_dssp SSEEEEEBSSTTCEEEEEEGGGTTCE-EEEEECCTTSCSCCCBCEECTTSSEEEEE-------CTTCEEEEEETTTCCEE
T ss_pred CCcEEEEecCCCceEEEEEcCCCcee-EEeeeccchhcCCcEEEEEeCCCCeEEEE-------ECCCcEEEEECCCCCEE
Confidence 677777655 7888888765210 11111112 23 778899999 6777667 77899999999876543
Q ss_pred EE----eecCCCcE--EEEEEcC--C-eEEEEeCCCcEEEEEccCCCC-----------------cceecceEEEEecCC
Q 041206 250 QT----LKGHSDTV--TSLLFWD--E-YLFSSSLDETIKIWLYTHTKN-----------------NAELSSLFGMLDAEA 303 (371)
Q Consensus 250 ~~----~~~~~~~v--~~~~~~~--~-~l~s~~~dg~i~iwd~~~~~~-----------------~~~~~~~~~~~~~~~ 303 (371)
.. ..++...- ..++|++ . ++++-..++.|+.|+...... ...+.....+...++
T Consensus 254 ~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d 333 (409)
T 3hrp_A 254 LIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDED 333 (409)
T ss_dssp EEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT
T ss_pred EEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC
Confidence 22 22222222 3888883 3 555556778899998653210 001223444555555
Q ss_pred CCEEEEec-CCCeEEEEEcCCcceeeeecC---------------CceEEEEEeCCCC-eEEeeCCCCcEEEEEc
Q 041206 304 KPVLFSSG-KDSAIRLYELPSFKLRARIFS---------------RREVEVDQIGPAG-LFFPGDASGSVGVWKW 361 (371)
Q Consensus 304 ~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~---------------~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~ 361 (371)
+.++++-. .++.|+.|++.+++......+ -.....++++|++ ++++-..++.|+.+++
T Consensus 334 G~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 334 GNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 66777777 889999999877664322211 1458999999999 8888888889988876
No 193
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.44 E-value=3.4e-10 Score=98.71 Aligned_cols=252 Identities=9% Similarity=0.023 Sum_probs=167.6
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEECCCCceEEEEeCCC-eeEEEeecCCEEEEec-----------CCcEEEEEeC
Q 041206 102 VGLPSGSNKLYSGSR-----DGRVSVWDRDSGRCVNVITNGA-EIGCLISEGSWVFLGL-----------PNAVKSWRVN 164 (371)
Q Consensus 102 ~~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~i~~~~~~ 164 (371)
....|+++.++.... ++.|.+.|..+++.+.+++.+. +-..+.++++++++++ ++.|.+||..
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCcEEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 445688888888765 6789999999999998887643 3244556788877654 4679999998
Q ss_pred CCCeeE------------------EEEeCC--EEEEEeC--CCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCc--
Q 041206 165 AASVNA------------------LVVNND--LLFAGSE--GGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDT-- 220 (371)
Q Consensus 165 ~~~v~~------------------~~~~~~--~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-- 220 (371)
+..+.. +.++|+ +++++.. ++.|.++|+.+. +.+.++..... ....|.+
T Consensus 118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~----~vv~tI~v~g~---~~~~P~g~~ 190 (386)
T 3sjl_D 118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK----AFKRMLDVPDC---YHIFPTAPD 190 (386)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT----EEEEEEECCSE---EEEEEEETT
T ss_pred CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC----cEEEEEECCCc---ceeecCCCc
Confidence 885433 677877 6666653 689999999998 77777754331 1122333
Q ss_pred eeEecccceeeeeCCCeEEEEECCC-ceEEEEeecC----CCcEE-EEEEc--CCeEEEEeCCCcEEEEEccCCCC--cc
Q 041206 221 RWNSKEEAAVFEFCGHTTRTWNLDN-LECVQTLKGH----SDTVT-SLLFW--DEYLFSSSLDETIKIWLYTHTKN--NA 290 (371)
Q Consensus 221 ~l~~~~~~~~~~~~dg~i~iwd~~~-~~~~~~~~~~----~~~v~-~~~~~--~~~l~s~~~dg~i~iwd~~~~~~--~~ 290 (371)
.+++. +.||.+.+.++.+ ++.......+ ..++. ...|. +..++-.+.+|.+.+.|+..... ..
T Consensus 191 ~~~~~-------~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~ 263 (386)
T 3sjl_D 191 TFFMH-------CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLP 263 (386)
T ss_dssp EEEEE-------ETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECC
T ss_pred eeEEE-------CCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeec
Confidence 36666 7888888888876 5543221111 12222 13453 33444466689999999865431 11
Q ss_pred ee--------------cce-EEEEecCCCCEEEEecC----------CCeEEEEEcCCcceeeeecCCceEEEEEeCCCC
Q 041206 291 EL--------------SSL-FGMLDAEAKPVLFSSGK----------DSAIRLYELPSFKLRARIFSRREVEVDQIGPAG 345 (371)
Q Consensus 291 ~~--------------~~~-~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~ 345 (371)
.+ ... .....++++ .++.... .+.|.++|+.+++.+.++....+++.++++||+
T Consensus 264 ~~~~~~~~~~~~g~~p~g~q~~a~~~~~~-~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~ 342 (386)
T 3sjl_D 264 AVEALTEAERADGWRPGGWQQVAYHRALD-RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDE 342 (386)
T ss_dssp CEESSCHHHHHTTEEECSSSCEEEETTTT-EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSS
T ss_pred ceeccccccccccccCCCcceeeECCCCC-eEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCC
Confidence 11 011 111344444 4444321 257999999999999998877789999999998
Q ss_pred --eEEe-eCCCCcEEEEEccccceec
Q 041206 346 --LFFP-GDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 346 --~l~~-~~~dg~i~iw~~~~~~~~~ 368 (371)
+|++ ...++.|.++|..+++..+
T Consensus 343 ~~~ly~tn~~~~~VsViD~~t~k~~~ 368 (386)
T 3sjl_D 343 KPLLYALSTGDKTLYIHDAESGEELR 368 (386)
T ss_dssp SCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred CeEEEEEcCCCCeEEEEECCCCcEEE
Confidence 4555 5568999999999887654
No 194
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.43 E-value=1.8e-10 Score=106.59 Aligned_cols=219 Identities=13% Similarity=0.046 Sum_probs=153.2
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeC
Q 041206 106 SGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSE 183 (371)
Q Consensus 106 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~ 183 (371)
|.+.++++...+++|.++|..+++.+.++..+.. +..+.++|+ ++++++.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~----------------------------p~~v~~SpDGr~lyv~~~ 216 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA----------------------------VHISRLSASGRYLFVIGR 216 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSC----------------------------EEEEEECTTSCEEEEEET
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCC----------------------------ccceEECCCCCEEEEEcC
Confidence 4455677778899999999999999988875433 668889988 8888899
Q ss_pred CCeEEEEecc--CCCCcceeeEEEecCcceEEEEec----CCce-e-EecccceeeeeCCCeEEEEECCCceEEEEeecC
Q 041206 184 GGVISVWKGT--FVANPFKQVASIRAPLWFCSLSSS----NDTR-W-NSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGH 255 (371)
Q Consensus 184 dg~v~iwd~~--~~~~~~~~~~~~~~~~~v~~~~~~----~~~~-l-~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~ 255 (371)
++.|.+||+. +. +.+..+........++++ |||+ + ++. ..++.+.++|..+.+.++.+...
T Consensus 217 dg~V~viD~~~~t~----~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n-------~~~~~v~ViD~~t~~~~~~i~~~ 285 (567)
T 1qks_A 217 DGKVNMIDLWMKEP----TTVAEIKIGSEARSIETSKMEGWEDKYAIAGA-------YWPPQYVIMDGETLEPKKIQSTR 285 (567)
T ss_dssp TSEEEEEETTSSSC----CEEEEEECCSEEEEEEECCSTTCTTTEEEEEE-------EETTEEEEEETTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCC----cEeEEEecCCCCceeEEccccCCCCCEEEEEE-------ccCCeEEEEECCCCcEEEEEecc
Confidence 9999999996 55 566677665566899999 6996 4 445 66799999999999998876532
Q ss_pred ----------CC-cEEEEEEc---CCeEEEEeCCCcEEEEEccCCCCccee-----cceEEEEecCCCCEE-EEecCCCe
Q 041206 256 ----------SD-TVTSLLFW---DEYLFSSSLDETIKIWLYTHTKNNAEL-----SSLFGMLDAEAKPVL-FSSGKDSA 315 (371)
Q Consensus 256 ----------~~-~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~l-~~~~~d~~ 315 (371)
.. .+..+..+ +.++++...+|.|.++|+......... .......+.++++++ ++...++.
T Consensus 286 ~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~ 365 (567)
T 1qks_A 286 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK 365 (567)
T ss_dssp EECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTE
T ss_pred ccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCe
Confidence 12 56677766 346677778899999998654311100 011122333444455 45557889
Q ss_pred EEEEEcCCcceeeeecC-Cc---eEEEEE-eCCCC--eEEeeC-CCCcEEEEEccc
Q 041206 316 IRLYELPSFKLRARIFS-RR---EVEVDQ-IGPAG--LFFPGD-ASGSVGVWKWLL 363 (371)
Q Consensus 316 i~iwd~~~~~~~~~~~~-~~---~v~~~~-~s~~~--~l~~~~-~dg~i~iw~~~~ 363 (371)
|.++|+.+++++..+.. .. +-.... ++|++ .+++.. .++.|.+++..+
T Consensus 366 V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 366 LVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp EEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred EEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 99999999987665543 11 101222 57875 555543 578999999876
No 195
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.42 E-value=1.1e-10 Score=101.98 Aligned_cols=215 Identities=12% Similarity=0.120 Sum_probs=136.1
Q ss_pred CCeEEEEEcCCCCEEEEEe---------CCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCC
Q 041206 97 KAVTNVGLPSGSNKLYSGS---------RDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAAS 167 (371)
Q Consensus 97 ~~V~~~~~~~~~~~l~s~~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 167 (371)
..+...++ ||++++... .++.|.+||+.+++.... . .
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~-------------------------------~ 60 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-E-------------------------------N 60 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-E-------------------------------S
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-c-------------------------------c
Confidence 34667777 788776542 256799999988765332 1 3
Q ss_pred eeEEEEeCC--EEEEEeCC---C--eEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eEecccceeeeeC-----
Q 041206 168 VNALVVNND--LLFAGSEG---G--VISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFC----- 234 (371)
Q Consensus 168 v~~~~~~~~--~l~~~~~d---g--~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~----- 234 (371)
+..++|+|+ .|+..+.+ + .|.+||+.++ +.......+. +..++|+||++ |+.+ +.
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g----~~~~l~~~~~-~~~~~wspdg~~l~~~-------~~~~~~~ 128 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL----SSKKILEAKN-IRSLEWNEDSRKLLIV-------GFKRRED 128 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT----EEEEEEEESE-EEEEEECTTSSEEEEE-------EECCCC-
T ss_pred CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC----ceEEEEcCCC-ccceeECCCCCEEEEE-------EccCCCc
Confidence 778899988 66665543 3 4777888776 4444444444 89999999996 6555 32
Q ss_pred ----------------------CCeEEEEECCCceEEEEeecCCCcEEEEEEcCC-eEEEEeCCC-------cEEEEEcc
Q 041206 235 ----------------------GHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDE-YLFSSSLDE-------TIKIWLYT 284 (371)
Q Consensus 235 ----------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg-------~i~iwd~~ 284 (371)
...|++||+.+++.+..+.. . .+..+.|+++ +++++..+. ...+|.+.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d 206 (347)
T 2gop_A 129 EDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE 206 (347)
T ss_dssp --------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE
T ss_pred CCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC
Confidence 35799999999887555554 3 7888899833 566665442 44555554
Q ss_pred CCCCccee--cceEEEEecCCCCEEEEecCC--------CeEEEEEcCCcceeeeec-CCceEEE-EEeCCCCeEEeeCC
Q 041206 285 HTKNNAEL--SSLFGMLDAEAKPVLFSSGKD--------SAIRLYELPSFKLRARIF-SRREVEV-DQIGPAGLFFPGDA 352 (371)
Q Consensus 285 ~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~-~~~~v~~-~~~s~~~~l~~~~~ 352 (371)
..+..... ..+.. .++++. .|+..+.+ ..|.+|| +++...... +...+.. +.|+ |+++++++.
T Consensus 207 ~~~~~~l~~~~~~~~-~spdg~-~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg~~~~~~~ 281 (347)
T 2gop_A 207 DGKEEKMFEKVSFYA-VDSDGE-RILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GKVYFTLFE 281 (347)
T ss_dssp TTEEEEEEEEESEEE-EEECSS-CEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TEEEEEEEE
T ss_pred CCceEEeccCcceee-ECCCCC-EEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-CcEEEEEec
Confidence 22111100 12222 255555 55544432 4688888 444433332 3567886 8999 777788888
Q ss_pred CCcEEEEEccccc
Q 041206 353 SGSVGVWKWLLAE 365 (371)
Q Consensus 353 dg~i~iw~~~~~~ 365 (371)
++.+++| +.+++
T Consensus 282 ~~~~~l~-~~~g~ 293 (347)
T 2gop_A 282 EGSVNLY-IWDGE 293 (347)
T ss_dssp TTEEEEE-EESSS
T ss_pred CCcEEEE-EcCCc
Confidence 9999999 87443
No 196
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.42 E-value=2.3e-10 Score=97.55 Aligned_cols=223 Identities=12% Similarity=0.011 Sum_probs=146.9
Q ss_pred EEEEEeeccceeeeeeeecce--eeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEE
Q 041206 35 EEREEMFGFGLAAMAIRVCNN--WISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLY 112 (371)
Q Consensus 35 ~~~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~ 112 (371)
+..+..+......+++.+... +.. +...+.|..|+ ..+ . ...+..+...+.+++++|++++++
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~-----~~~~~~i~~~~--------~~~-~-~~~~~~~~~~~~~l~~~~dg~l~v 84 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFS-----DVRQNRTWAWS--------DDG-Q-LSPEMHPSHHQNGHCLNKQGHLIA 84 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEE-----EGGGTEEEEEE--------TTS-C-EEEEESSCSSEEEEEECTTCCEEE
T ss_pred EEEEecCCccccCCeEeCCCCEEEEE-----eCCCCEEEEEE--------CCC-C-eEEEECCCCCcceeeECCCCcEEE
Confidence 344445555566778887654 322 34556788888 222 2 566777888899999999999888
Q ss_pred EEeCCCcEEEEECCCCceEEEEeC--CC---eeE--EEeecCCEEEE----ec--------------CCcEEEEEeC---
Q 041206 113 SGSRDGRVSVWDRDSGRCVNVITN--GA---EIG--CLISEGSWVFL----GL--------------PNAVKSWRVN--- 164 (371)
Q Consensus 113 s~~~dg~v~iwd~~~~~~~~~~~~--~~---~~~--~~~~~~~~~~~----~~--------------~~~i~~~~~~--- 164 (371)
+...++.|.+||..+++....... .. .+. .+.+++.++++ +. .+.|..++..
T Consensus 85 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 164 (296)
T 3e5z_A 85 CSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTL 164 (296)
T ss_dssp EETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCE
T ss_pred EecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCE
Confidence 877778999999988876544321 11 112 23345666665 21 2244444432
Q ss_pred ------CCCeeEEEEeCC--EEEEEeCCCeEEEEecc-CCCCcc-eeeEEEecCc-ceEEEEecCCceeEecccceeeee
Q 041206 165 ------AASVNALVVNND--LLFAGSEGGVISVWKGT-FVANPF-KQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEF 233 (371)
Q Consensus 165 ------~~~v~~~~~~~~--~l~~~~~dg~v~iwd~~-~~~~~~-~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~ 233 (371)
......++++|+ .+++.+.++.|.+|++. ++. . .....+..+. .+.+++++++|+++++ .
T Consensus 165 ~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~--~~~~~~~~~~~~~~p~~i~~d~~G~l~v~-------~ 235 (296)
T 3e5z_A 165 SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGE--TEYQGVHFTVEPGKTDGLRVDAGGLIWAS-------A 235 (296)
T ss_dssp EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSC--EEEEEEEECCSSSCCCSEEEBTTSCEEEE-------E
T ss_pred EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCc--CcCCCeEeeCCCCCCCeEEECCCCCEEEE-------c
Confidence 124678999988 56777778999999997 331 1 1122332233 6778999999998888 7
Q ss_pred CCCeEEEEECCCceEEEEeecCCCcEEEEEEc---CCeEEEEeCCCcEEEEEccC
Q 041206 234 CGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW---DEYLFSSSLDETIKIWLYTH 285 (371)
Q Consensus 234 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~ 285 (371)
++.|.+||.. ++.+..+..+.. +.+++|. ++.|+.++.++ +.-++...
T Consensus 236 -~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 236 -GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp -TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred -CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 8899999987 778888887777 8899994 34677777653 44444433
No 197
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.41 E-value=4.7e-11 Score=100.69 Aligned_cols=181 Identities=8% Similarity=-0.075 Sum_probs=134.6
Q ss_pred eCC-EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc--ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEE
Q 041206 174 NND-LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL--WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQ 250 (371)
Q Consensus 174 ~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~ 250 (371)
+|+ .|++++.++.|.+||.+++ +.+..+..+. .+.++.+.|+|+++.+ . ++.|+.||. +++.+.
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG----~~~w~~~~~~~~~~~~~~~~pdG~ilvs-------~-~~~V~~~d~-~G~~~W 69 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTK----EIVWEYPLEKGWECNSVAATKAGEILFS-------Y-SKGAKMITR-DGRELW 69 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTT----EEEEEEECCTTCCCCEEEECTTSCEEEE-------C-BSEEEEECT-TSCEEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCC----eEEEEeCCCccCCCcCeEECCCCCEEEe-------C-CCCEEEECC-CCCEEE
Confidence 355 8888999999999999888 7888887765 6889999999985444 3 677999999 799998
Q ss_pred EeecCC-CcEEEEEEc--CCeEEEEeC-CCcEEEEEccCCCC---------cceecceEEEEecCCCCEEEEecCCCeEE
Q 041206 251 TLKGHS-DTVTSLLFW--DEYLFSSSL-DETIKIWLYTHTKN---------NAELSSLFGMLDAEAKPVLFSSGKDSAIR 317 (371)
Q Consensus 251 ~~~~~~-~~v~~~~~~--~~~l~s~~~-dg~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 317 (371)
.+..+. ..+.++.+. ++++++.+. ++.+..+|...... .........+...+++.++++...++.|.
T Consensus 70 ~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~ 149 (276)
T 3no2_A 70 NIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVR 149 (276)
T ss_dssp EEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEE
T ss_pred EEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEE
Confidence 888653 467788777 678887776 66676666321110 00000111122344556999999999999
Q ss_pred EEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccceec
Q 041206 318 LYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 318 iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
.||.. ++.+.++.....+.++...++| .+++++.++.|..+|..+++..+
T Consensus 150 ~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w 200 (276)
T 3no2_A 150 EIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVR 200 (276)
T ss_dssp EECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEE
T ss_pred EECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEE
Confidence 99998 9999888766667778889999 88888888899999988776644
No 198
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.40 E-value=1.2e-09 Score=93.66 Aligned_cols=235 Identities=11% Similarity=0.041 Sum_probs=151.0
Q ss_pred eCccCCeEEEEEcCCCCEEEE-------EeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCC
Q 041206 93 NGHKKAVTNVGLPSGSNKLYS-------GSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNA 165 (371)
Q Consensus 93 ~~h~~~V~~~~~~~~~~~l~s-------~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 165 (371)
.+.-....+++|+++++++++ +..++.|.+||..+++...... ... . ...
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~---------------~-------~~~ 70 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-PEV---------------N-------GYG 70 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-CEE---------------T-------TEE
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-ccc---------------C-------CCC
Confidence 444456789999999988888 6778999999988877543221 000 0 001
Q ss_pred CCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEE-Ee---cC-c-ceEEEEecCCceeEecccceeeee-CC-
Q 041206 166 ASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVAS-IR---AP-L-WFCSLSSSNDTRWNSKEEAAVFEF-CG- 235 (371)
Q Consensus 166 ~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~---~~-~-~v~~~~~~~~~~l~~~~~~~~~~~-~d- 235 (371)
..+.+++++++ .+.+++..+.|.+||.. + +.... .. .. . .+.++++.++++++.+ + .+
T Consensus 71 ~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g----~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~-------~~~~~ 138 (314)
T 1pjx_A 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTD-G----TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWIT-------APAGE 138 (314)
T ss_dssp CCEEEEEECSSSSEEEEEETTTEEEEEETT-S----CEEECCSBCTTSCBCBCCCEEEECTTSCEEEE-------ECBCB
T ss_pred CCCceEEEecCCCcEEEEECCCCEEEEeCC-C----CEEEEEeccCCCccccCCcCEEECCCCCEEEE-------ecCcc
Confidence 24778888876 66666666689999987 5 22211 11 11 1 5889999999985544 3 33
Q ss_pred --------------CeEEEEECCCceEEEEeecCCCcEEEEEEc----CC--eEE-EEeCCCcEEEEEccC-CCC-----
Q 041206 236 --------------HTTRTWNLDNLECVQTLKGHSDTVTSLLFW----DE--YLF-SSSLDETIKIWLYTH-TKN----- 288 (371)
Q Consensus 236 --------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~----~~--~l~-s~~~dg~i~iwd~~~-~~~----- 288 (371)
+.|..||.. ++..... .+......++++ ++ .++ +...++.|.+||+.. ...
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~ 216 (314)
T 1pjx_A 139 VAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKV 216 (314)
T ss_dssp CTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEE
T ss_pred cccccccccccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceE
Confidence 578888876 5543332 233455777777 43 454 445678999999762 110
Q ss_pred ccee-----cceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC--eEEeeCCCCcEEEEE
Q 041206 289 NAEL-----SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG--LFFPGDASGSVGVWK 360 (371)
Q Consensus 289 ~~~~-----~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~--~l~~~~~dg~i~iw~ 360 (371)
.... .....+...+++.+.++...++.|.+||..+++.+..+. +...+.+++++|++ ++++...++.|..|+
T Consensus 217 ~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 217 WGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp EEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 0000 122334444556577776678899999998777655554 34778999999999 445555678999999
Q ss_pred cccc
Q 041206 361 WLLA 364 (371)
Q Consensus 361 ~~~~ 364 (371)
+...
T Consensus 297 ~~~~ 300 (314)
T 1pjx_A 297 WQRN 300 (314)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8753
No 199
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.39 E-value=1.7e-11 Score=107.30 Aligned_cols=156 Identities=13% Similarity=0.030 Sum_probs=122.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------eEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCC
Q 041206 98 AVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGR-----------CVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAA 166 (371)
Q Consensus 98 ~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 166 (371)
.++.+++++...++++|+.++ +++|++...+ ......... +..+.+++++++++.++.|++||+.+.
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd~~~L~v~~~~~l~v~dv~sl 116 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFHGDQVLVSTRNALYSLDLEEL 116 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEETTEEEEEESSEEEEEESSST
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEECCCEEEEEcCCcEEEEEchhh
Confidence 689999999999999999986 7779865333 223344556 888888889999999999999997544
Q ss_pred -----------CeeEEEEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeC
Q 041206 167 -----------SVNALVVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFC 234 (371)
Q Consensus 167 -----------~v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~ 234 (371)
.+.++.+.+..+++++.||.|.+||+.++ .... +. .|+|++|+|+| ++.| ..
T Consensus 117 ~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~----~~~~----~~~~Vs~v~WSpkG-~~vg-------~~ 180 (388)
T 1xip_A 117 SEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTK----STKQ----LAQNVTSFDVTNSQ-LAVL-------LK 180 (388)
T ss_dssp TCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTC----CEEE----EEESEEEEEECSSE-EEEE-------ET
T ss_pred hccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCC----cccc----ccCCceEEEEcCCc-eEEE-------Ec
Confidence 56677776667889999999999999976 3322 33 89999999999 6677 89
Q ss_pred CCeEEEEECCCceE--EEEe------e---cCCCcEEEEEEcC--CeEEE
Q 041206 235 GHTTRTWNLDNLEC--VQTL------K---GHSDTVTSLLFWD--EYLFS 271 (371)
Q Consensus 235 dg~i~iwd~~~~~~--~~~~------~---~~~~~v~~~~~~~--~~l~s 271 (371)
||++++|+...++. ..++ . +|...|.++.|.+ .++++
T Consensus 181 dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 181 DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 99999999988775 5566 2 3778999999983 34444
No 200
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.36 E-value=6.6e-10 Score=98.19 Aligned_cols=247 Identities=11% Similarity=0.076 Sum_probs=161.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeCCC----------ee-EEEeecCCEEE-EecCCcEEEEEeCCCCee-EE--
Q 041206 107 GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGA----------EI-GCLISEGSWVF-LGLPNAVKSWRVNAASVN-AL-- 171 (371)
Q Consensus 107 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~-~~~~~~i~~~~~~~~~v~-~~-- 171 (371)
.+..++.++.++.|..+|..+|+.+..+.... .+ ......+..++ ...++.+..+|..++.+. ..
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 35688888889999999999999988777632 22 22233444444 456788999998877432 11
Q ss_pred --------EEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCcce------EEEEecCCceeEecccceeeeeCCCe
Q 041206 172 --------VVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWF------CSLSSSNDTRWNSKEEAAVFEFCGHT 237 (371)
Q Consensus 172 --------~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v------~~~~~~~~~~l~~~~~~~~~~~~dg~ 237 (371)
....+.+++++.++.|..+|..++ +.+-.......+ ...... ++.++.+ +.++.
T Consensus 132 ~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG----~~~W~~~~~~~~~~~~~~~~~~~~-~~~v~~g-------~~~g~ 199 (376)
T 3q7m_A 132 AGEALSRPVVSDGLVLIHTSNGQLQALNEADG----AVKWTVNLDMPSLSLRGESAPTTA-FGAAVVG-------GDNGR 199 (376)
T ss_dssp SSCCCSCCEEETTEEEEECTTSEEEEEETTTC----CEEEEEECCC-----CCCCCCEEE-TTEEEEC-------CTTTE
T ss_pred CCceEcCCEEECCEEEEEcCCCeEEEEECCCC----cEEEEEeCCCCceeecCCCCcEEE-CCEEEEE-------cCCCE
Confidence 223347888999999999999988 555444443322 111111 4567777 88999
Q ss_pred EEEEECCCceEEEEeecCCCc----------E-EEEEEcCCeEEEEeCCCcEEEEEccCCCCcce--ecceEEEEecCCC
Q 041206 238 TRTWNLDNLECVQTLKGHSDT----------V-TSLLFWDEYLFSSSLDETIKIWLYTHTKNNAE--LSSLFGMLDAEAK 304 (371)
Q Consensus 238 i~iwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~ 304 (371)
+..+|.++++.+......... + ......+..++.++.++.+..+|.++.+..-. ......... .++
T Consensus 200 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~-~~~ 278 (376)
T 3q7m_A 200 VSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIV-DGN 278 (376)
T ss_dssp EEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEE-ETT
T ss_pred EEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceE-ECC
Confidence 999999999988766532110 1 11122367888888899999999876653211 111222222 233
Q ss_pred CEEEEecCCCeEEEEEcCCcceeeeecC--CceEEEEEeCCCCeEEeeCCCCcEEEEEccccceec
Q 041206 305 PVLFSSGKDSAIRLYELPSFKLRARIFS--RREVEVDQIGPAGLFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 305 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
.++.++.++.|..+|..+++.+..... ...+...... ++.|+.++.+|.|.++|..+++...
T Consensus 279 -~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~-~~~l~v~~~~g~l~~~d~~tG~~~~ 342 (376)
T 3q7m_A 279 -RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY-NGNLVVGDSEGYLHWINVEDGRFVA 342 (376)
T ss_dssp -EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE-TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE-CCEEEEEeCCCeEEEEECCCCcEEE
Confidence 677788899999999999998876651 2222222222 3488888899999999998877654
No 201
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.35 E-value=8.7e-11 Score=102.79 Aligned_cols=170 Identities=11% Similarity=0.012 Sum_probs=126.4
Q ss_pred CeeEEEEeCC--EEEEEeCCCeEEEEeccCCC-------CcceeeEEEecCcceEEEEecCCceeEecccceeeeeCCCe
Q 041206 167 SVNALVVNND--LLFAGSEGGVISVWKGTFVA-------NPFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHT 237 (371)
Q Consensus 167 ~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~dg~ 237 (371)
+++.+++++. ++++|+.+ .+.+|++.... ..+++....... .|+.++| |+.++.. +.++.
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp-~V~~l~f--d~~~L~v-------~~~~~ 107 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIP-DVIFVCF--HGDQVLV-------STRNA 107 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECT-TEEEEEE--ETTEEEE-------EESSE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCC-CeeEEEE--CCCEEEE-------EcCCc
Confidence 5888999888 88888876 56669876442 001222233333 4999999 6664444 56799
Q ss_pred EEEEECCCceEEEEeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCCcceecceEEEEecCCCCEEEEecCCCeEE
Q 041206 238 TRTWNLDNLECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKNNAELSSLFGMLDAEAKPVLFSSGKDSAIR 317 (371)
Q Consensus 238 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 317 (371)
|++||+++.........|..++.++.+.+..++++..||.+.+||+...........+.++.+++.+ ++.|..||+++
T Consensus 108 l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~~~~~Vs~v~WSpkG--~~vg~~dg~i~ 185 (388)
T 1xip_A 108 LYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQ--LAVLLKDRSFQ 185 (388)
T ss_dssp EEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSE--EEEEETTSCEE
T ss_pred EEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCccccccCCceEEEEcCCc--eEEEEcCCcEE
Confidence 9999998876666677788889998888556999999999999999876655555677777787777 67788999999
Q ss_pred EEEcCCcce--eeee------c----CCceEEEEEeCCCC-eEEe
Q 041206 318 LYELPSFKL--RARI------F----SRREVEVDQIGPAG-LFFP 349 (371)
Q Consensus 318 iwd~~~~~~--~~~~------~----~~~~v~~~~~s~~~-~l~~ 349 (371)
+|+....+. ..++ . +...|.++.|.+++ ++++
T Consensus 186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 999887764 4444 1 46789999999999 5554
No 202
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.34 E-value=4.4e-10 Score=107.61 Aligned_cols=274 Identities=9% Similarity=-0.056 Sum_probs=156.4
Q ss_pred CCCCcccCCCCceeeccCcccc------------cceeEEEE------Eeeccceeeeeeeecceeecccee-eCCccce
Q 041206 9 DDDEHKHSEGGETMMSDDDDLM------------KGRAEERE------EMFGFGLAAMAIRVCNNWISDSCV-YGDKCRF 69 (371)
Q Consensus 9 ~~~~~~~sp~g~~l~~~~~d~~------------~~~~~~~~------~~h~~~v~~~~~~~~~~~~~~~~~-~~~~~~~ 69 (371)
.++....+|+|++++....+.. .++....+ ++|...+..++++|.+.+++-... .|+....
T Consensus 69 ~~~~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~ 148 (695)
T 2bkl_A 69 TDSVSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAV 148 (695)
T ss_dssp CCEECCCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCE
T ss_pred cccCCCCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEE
Confidence 3444557789988875543321 11111111 134445778889998776553433 3445678
Q ss_pred EEEEEeccCCCCccCCceeeEeeeCccCCe--EEEEEcCCCCEEEEEeCCCc-------------EEEEECCCCce--EE
Q 041206 70 LHSWVHSVDGDNTTNSLATLMKLNGHKKAV--TNVGLPSGSNKLYSGSRDGR-------------VSVWDRDSGRC--VN 132 (371)
Q Consensus 70 i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V--~~~~~~~~~~~l~s~~~dg~-------------v~iwd~~~~~~--~~ 132 (371)
|++|+. .+++.+. ..+...+ ..++|+||++.|+.++.|.. |++|++.+++. ..
T Consensus 149 i~v~dl--------~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~l 218 (695)
T 2bkl_A 149 LHVIDV--------DSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTV 218 (695)
T ss_dssp EEEEET--------TTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEE
T ss_pred EEEEEC--------CCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceE
Confidence 999993 2333320 1122222 68899999999999998776 99999998762 12
Q ss_pred EEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCCC----eEEEEeccCCCCcceeeEEEe
Q 041206 133 VITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEGG----VISVWKGTFVANPFKQVASIR 206 (371)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~dg----~v~iwd~~~~~~~~~~~~~~~ 206 (371)
.+.... +...+.++.++|+ +|+..+.++ .|++|+..++ ....+.
T Consensus 219 v~~~~~-------------------------~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~-----~~~~l~ 268 (695)
T 2bkl_A 219 VHERTG-------------------------DPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK-----DFRLLV 268 (695)
T ss_dssp EECCCC-------------------------CTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS-----SCEEEE
T ss_pred EEecCC-------------------------CCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC-----ceEEee
Confidence 222110 1224778889988 666655554 6666665443 233344
Q ss_pred cCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceE---EEEeecC-CCcEEEEEEc-CCeEEEEeCCCcEEE
Q 041206 207 APL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLEC---VQTLKGH-SDTVTSLLFW-DEYLFSSSLDETIKI 280 (371)
Q Consensus 207 ~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~---~~~~~~~-~~~v~~~~~~-~~~l~s~~~dg~i~i 280 (371)
.+. .+....+ +++.++..... ...++.|.+||+.+++. ...+..+ ...+..+++. +.++++...|+..++
T Consensus 269 ~~~~~~~~~~~-~~g~l~~~s~~---~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l 344 (695)
T 2bkl_A 269 KGVGAKYEVHA-WKDRFYVLTDE---GAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEV 344 (695)
T ss_dssp ECSSCCEEEEE-ETTEEEEEECT---TCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEE
T ss_pred cCCCceEEEEe-cCCcEEEEECC---CCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEE
Confidence 444 5555555 44444443000 01368999999987653 3333333 4467888887 567788888999888
Q ss_pred EEccCCCC-cce-----ecceEEEEecCCCCEEE-Ee---cCCCeEEEEEcCCcce
Q 041206 281 WLYTHTKN-NAE-----LSSLFGMLDAEAKPVLF-SS---GKDSAIRLYELPSFKL 326 (371)
Q Consensus 281 wd~~~~~~-~~~-----~~~~~~~~~~~~~~~l~-~~---~~d~~i~iwd~~~~~~ 326 (371)
|.+..... ... ...+..+...+++..++ +. ...+.|++||+.+++.
T Consensus 345 ~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 345 RVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 87653211 100 11122222223333444 33 2347899999988763
No 203
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.32 E-value=8.8e-10 Score=92.44 Aligned_cols=194 Identities=8% Similarity=-0.025 Sum_probs=128.8
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEe
Q 041206 95 HKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVN 174 (371)
Q Consensus 95 h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~ 174 (371)
+...+.+++++++++++++.. ++.|.+||....... .+... ....+.+++++
T Consensus 65 ~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~--------------------------~~~~p~~i~~~ 116 (270)
T 1rwi_B 65 GLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFD--------------------------GLNYPEGLAVD 116 (270)
T ss_dssp SCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCC--------------------------SCSSEEEEEEC
T ss_pred CcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecC--------------------------CcCCCcceEEC
Confidence 445688999999998666665 889999998765432 22111 11247788888
Q ss_pred CC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeE-ecccceeeeeCCCeEEEEECCCceEEE
Q 041206 175 ND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWN-SKEEAAVFEFCGHTTRTWNLDNLECVQ 250 (371)
Q Consensus 175 ~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~-~~~~~~~~~~~dg~i~iwd~~~~~~~~ 250 (371)
++ .+++...++.|.+|+..+. .......... .+.+++++++++++ +. ..++.|.+||........
T Consensus 117 ~~g~l~v~~~~~~~i~~~~~~~~----~~~~~~~~~~~~p~~i~~~~~g~l~v~~-------~~~~~i~~~~~~~~~~~~ 185 (270)
T 1rwi_B 117 TQGAVYVADRGNNRVVKLAAGSK----TQTVLPFTGLNDPDGVAVDNSGNVYVTD-------TDNNRVVKLEAESNNQVV 185 (270)
T ss_dssp TTCCEEEEEGGGTEEEEECTTCC----SCEECCCCSCCSCCCEEECTTCCEEEEE-------GGGTEEEEECTTTCCEEE
T ss_pred CCCCEEEEECCCCEEEEEECCCc----eeEeeccccCCCceeEEEeCCCCEEEEE-------CCCCEEEEEecCCCceEe
Confidence 77 4444456789999976554 2221112222 67889999988854 44 457899999998766554
Q ss_pred EeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCc----ceecceEEEEecCCCCEEEEecCCCeEEEEEcCCc
Q 041206 251 TLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNN----AELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSF 324 (371)
Q Consensus 251 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 324 (371)
....+...+.+++++ +.++++...++.|.+|+....... ........+...++++++++...++.|+++++...
T Consensus 186 ~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 186 LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp CCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred ecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 333444678899998 455666667889999997654321 11223445555555568888889999999998876
Q ss_pred cee
Q 041206 325 KLR 327 (371)
Q Consensus 325 ~~~ 327 (371)
+..
T Consensus 266 ~~~ 268 (270)
T 1rwi_B 266 HHH 268 (270)
T ss_dssp GSC
T ss_pred ccc
Confidence 543
No 204
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.32 E-value=6.5e-10 Score=98.63 Aligned_cols=258 Identities=9% Similarity=-0.041 Sum_probs=166.2
Q ss_pred ceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceEEEEeCC
Q 041206 68 RFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGS----------RDGRVSVWDRDSGRCVNVITNG 137 (371)
Q Consensus 68 ~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~ 137 (371)
..+.+.+ ..+.+.+.++.--..+ .++++||+++|+.+. .++.|.++|..+++.+.++...
T Consensus 99 ~~VsVID--------~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~ 168 (426)
T 3c75_H 99 TQQFVID--------GSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELP 168 (426)
T ss_dssp EEEEEEE--------TTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEET
T ss_pred CeEEEEE--------CCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECC
Confidence 4666666 5667888888765566 899999999988876 3678999999999998887642
Q ss_pred CeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeC--CCeEEEEeccCCCCcceeeEEEecCcceEE
Q 041206 138 AEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSE--GGVISVWKGTFVANPFKQVASIRAPLWFCS 213 (371)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~ 213 (371)
..-.. ........+.++|+ +++++.. ++.|.+.|+.+. +.+..+.....
T Consensus 169 g~~r~--------------------~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~----kvv~~I~v~g~--- 221 (426)
T 3c75_H 169 DAPRF--------------------LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK----TFDRMLDVPDC--- 221 (426)
T ss_dssp TCCCC--------------------CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT----EEEEEEECCSE---
T ss_pred Ccccc--------------------ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC----eEEEEEEcCCc---
Confidence 10000 00012456778877 6666653 578999999998 66666654321
Q ss_pred EEecCCc--eeEecccceeeeeCCCeEEEEECCCceEEEE----eecCCCcEE-EEEEc--CCeEEEEeCCCcEEEEEcc
Q 041206 214 LSSSNDT--RWNSKEEAAVFEFCGHTTRTWNLDNLECVQT----LKGHSDTVT-SLLFW--DEYLFSSSLDETIKIWLYT 284 (371)
Q Consensus 214 ~~~~~~~--~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~v~-~~~~~--~~~l~s~~~dg~i~iwd~~ 284 (371)
....|++ .+++. +.||.+.+.+..+++.... +.....++. .+.+. +..++..+..+.+.+.|+.
T Consensus 222 ~~~~p~g~~~~v~~-------~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~ 294 (426)
T 3c75_H 222 YHIFPASPTVFYMN-------CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLT 294 (426)
T ss_dssp EEEEEEETTEEEEE-------ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEEC
T ss_pred eeeccCCCcEEEEE-------cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEecc
Confidence 2233433 25555 7788888888766554422 211112211 23344 4555556677889999975
Q ss_pred CCCCc---------------c-eecce-EEEEecCCCCEEEEec---------CCCeEEEEEcCCcceeeeecCCceEEE
Q 041206 285 HTKNN---------------A-ELSSL-FGMLDAEAKPVLFSSG---------KDSAIRLYELPSFKLRARIFSRREVEV 338 (371)
Q Consensus 285 ~~~~~---------------~-~~~~~-~~~~~~~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~v~~ 338 (371)
..... . ..... ...+.+++++++++.. ..+.|.++|+.+.+.+.++........
T Consensus 295 ~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~g 374 (426)
T 3c75_H 295 AEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDS 374 (426)
T ss_dssp SSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECE
T ss_pred CCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCe
Confidence 33210 0 00010 0124555553444432 135799999999999999886667999
Q ss_pred EEeCCCC--eEEeeC-CCCcEEEEEccccceecc
Q 041206 339 DQIGPAG--LFFPGD-ASGSVGVWKWLLAEQQKM 369 (371)
Q Consensus 339 ~~~s~~~--~l~~~~-~dg~i~iw~~~~~~~~~~ 369 (371)
++|+||+ ++++.. .++.|.++|+.+.+..+.
T Consensus 375 ia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 375 INVSQDAEPLLYALSAGTQTLHIYDAATGEELRS 408 (426)
T ss_dssp EEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred EEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence 9999998 566665 699999999998876543
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.31 E-value=4.1e-08 Score=83.40 Aligned_cols=252 Identities=11% Similarity=0.092 Sum_probs=156.7
Q ss_pred eCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC---CCeeEEEee--cCCEEEEec-CCcEEEEEeCC-
Q 041206 93 NGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN---GAEIGCLIS--EGSWVFLGL-PNAVKSWRVNA- 165 (371)
Q Consensus 93 ~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~-~~~i~~~~~~~- 165 (371)
......+.++++.+++++.++...++.|.+||.. ++... +.. ...+..+.. ++.+.++.. ++.|..++...
T Consensus 16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~ 93 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGG 93 (300)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC
T ss_pred CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCCCC
Confidence 3455688999999999988887778999999987 65443 322 133445543 355555543 46677776541
Q ss_pred ----------CCeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceee-EEEecCc-ceEEEEecCCceeEecccceee
Q 041206 166 ----------ASVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQV-ASIRAPL-WFCSLSSSNDTRWNSKEEAAVF 231 (371)
Q Consensus 166 ----------~~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~ 231 (371)
..+.+++++++ ++++...++.|..+|.. + +.. ..+.... .+.++++.++++++.+
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g----~~~~~~~~~~~~~~~~i~~d~~g~l~v~------ 162 (300)
T 2qc5_A 94 FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-G----TIYEYDLPNKGSYPAFITLGSDNALWFT------ 162 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-S----CEEEEECSSTTCCEEEEEECTTSSEEEE------
T ss_pred eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-C----CEEEccCCCCCCCceeEEECCCCCEEEE------
Confidence 24677778766 44444447889999887 4 222 1222233 7899999999885544
Q ss_pred eeCCCeEEEEECCCceEEE-EeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC----cceecceEEEEecCCC
Q 041206 232 EFCGHTTRTWNLDNLECVQ-TLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN----NAELSSLFGMLDAEAK 304 (371)
Q Consensus 232 ~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~ 304 (371)
...++.|..+|. +++... .+..+...+..++++ +++.++....+.|.+||...... .........+...+++
T Consensus 163 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g 241 (300)
T 2qc5_A 163 ENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNS 241 (300)
T ss_dssp ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTT
T ss_pred ecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCC
Confidence 044788999998 555443 222344568889887 45555555567899998632111 0111233444455555
Q ss_pred CEEEEecCCCeEEEEEcCCcceeee-ec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEc
Q 041206 305 PVLFSSGKDSAIRLYELPSFKLRAR-IF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKW 361 (371)
Q Consensus 305 ~~l~~~~~d~~i~iwd~~~~~~~~~-~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~ 361 (371)
.+.++...++.|..||.. ++.... +. ....+.+++++++| ++++.. . .|..++.
T Consensus 242 ~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 242 EIWFTEWGANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CEEEeccCCCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 566666667899999984 443321 22 24568899999999 444444 4 6666664
No 206
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.31 E-value=4e-10 Score=107.76 Aligned_cols=238 Identities=11% Similarity=0.042 Sum_probs=141.8
Q ss_pred CccCCeEEEEEcCCCCEEEE-----EeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCe
Q 041206 94 GHKKAVTNVGLPSGSNKLYS-----GSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASV 168 (371)
Q Consensus 94 ~h~~~V~~~~~~~~~~~l~s-----~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v 168 (371)
+|...+..++|||||++||- |+....|++||+.+++.+....... ..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~----------------------------k~ 177 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV----------------------------KF 177 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE----------------------------ES
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc----------------------------ee
Confidence 46667999999999998883 3334679999999998654311100 01
Q ss_pred eEEEEeCC--EEEEEeCC-------------CeEEEEeccCCCCcceeeEEEec-Cc-ceEEEEecCCce-e-Eecccce
Q 041206 169 NALVVNND--LLFAGSEG-------------GVISVWKGTFVANPFKQVASIRA-PL-WFCSLSSSNDTR-W-NSKEEAA 229 (371)
Q Consensus 169 ~~~~~~~~--~l~~~~~d-------------g~v~iwd~~~~~~~~~~~~~~~~-~~-~v~~~~~~~~~~-l-~~~~~~~ 229 (371)
..++|+ + .|+.++.+ ..|++|++.+.......+..... +. ...++.++||++ + ++..
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~--- 253 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAA--- 253 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEE---
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEc---
Confidence 334555 4 55555554 34999998876322223333334 44 578899999997 4 3220
Q ss_pred eeeeCCCeEEEEECCCce-EEEEeecCCCcEEEEEE-cCCeEE-EEeCC---CcEEEEEccCCCC---cc---eecceEE
Q 041206 230 VFEFCGHTTRTWNLDNLE-CVQTLKGHSDTVTSLLF-WDEYLF-SSSLD---ETIKIWLYTHTKN---NA---ELSSLFG 297 (371)
Q Consensus 230 ~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~-~~~~l~-s~~~d---g~i~iwd~~~~~~---~~---~~~~~~~ 297 (371)
.+...+.|+++|+.+++ ....+..+......... .++.|+ ....+ +.|..+|+..... .. ......
T Consensus 254 -~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~- 331 (693)
T 3iuj_A 254 -NSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL- 331 (693)
T ss_dssp -SSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE-
T ss_pred -cCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE-
Confidence 00234689999998763 34555666665555422 255444 44433 5788899876543 10 001112
Q ss_pred EEecCCCCEEEEecCCC--eEEEEEcCCcceeeeec--CCceEEEEEeCCCC-eEEeeCCC----CcEEEEEccccce
Q 041206 298 MLDAEAKPVLFSSGKDS--AIRLYELPSFKLRARIF--SRREVEVDQIGPAG-LFFPGDAS----GSVGVWKWLLAEQ 366 (371)
Q Consensus 298 ~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~-~l~~~~~d----g~i~iw~~~~~~~ 366 (371)
.+.+.++.++++...++ .|++||+..+.. ..+. ....+..+.++|++ .++....+ +.|..||+.+++.
T Consensus 332 ~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 332 TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EEEEECCEEEEEEEECCeeEEEEEECCCCee-EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 34455553444444454 688999885443 3332 45678888889888 44333333 7899999876543
No 207
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.29 E-value=9e-09 Score=87.74 Aligned_cols=218 Identities=11% Similarity=0.030 Sum_probs=137.9
Q ss_pred eeeCccCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCee
Q 041206 91 KLNGHKKAVTNVGLPSG-SNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVN 169 (371)
Q Consensus 91 ~l~~h~~~V~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~ 169 (371)
.+..+..--.+..|+|+ +.++++...++.|..||..+++. ..+... ..+.
T Consensus 7 ~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~----------------------------~~~~ 57 (297)
T 3g4e_A 7 VLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMD----------------------------APVS 57 (297)
T ss_dssp EECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECS----------------------------SCEE
T ss_pred EeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCC----------------------------CceE
Confidence 34445556678899995 55666667789999999987765 233322 2477
Q ss_pred EEEEeCC-EEEEEeCCCeEEEEeccCCCCcceeeEEEec----Cc-ceEEEEecCCceeEecccceeeee----------
Q 041206 170 ALVVNND-LLFAGSEGGVISVWKGTFVANPFKQVASIRA----PL-WFCSLSSSNDTRWNSKEEAAVFEF---------- 233 (371)
Q Consensus 170 ~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----~~-~v~~~~~~~~~~l~~~~~~~~~~~---------- 233 (371)
+++++++ .++++. ++.|.+||..++ +....... .. .++.++++|+|+++.+ +
T Consensus 58 ~i~~~~dG~l~v~~-~~~l~~~d~~~g----~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~-------~~~~~~~~~~~ 125 (297)
T 3g4e_A 58 SVALRQSGGYVATI-GTKFCALNWKEQ----SAVVLATVDNDKKNNRFNDGKVDPAGRYFAG-------TMAEETAPAVL 125 (297)
T ss_dssp EEEEBTTSSEEEEE-TTEEEEEETTTT----EEEEEEECCTTCSSEEEEEEEECTTSCEEEE-------EEECCSBTTBC
T ss_pred EEEECCCCCEEEEE-CCeEEEEECCCC----cEEEEEecCCCCCCCCCCCEEECCCCCEEEe-------cCCcccccccc
Confidence 8888887 444554 568999998876 32221111 12 6889999999986555 3
Q ss_pred --CCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeE-EEEeCCCcEEEEEcc--CCCCc--cee-------cceEE
Q 041206 234 --CGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYL-FSSSLDETIKIWLYT--HTKNN--AEL-------SSLFG 297 (371)
Q Consensus 234 --~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i~iwd~~--~~~~~--~~~-------~~~~~ 297 (371)
..+.|+.+|.. ++... +..+......++|+ ++.| ++.+.++.|.+|++. ..... ..+ .....
T Consensus 126 ~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g 203 (297)
T 3g4e_A 126 ERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDG 203 (297)
T ss_dssp CTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEE
T ss_pred cCCCcEEEEEECC-CCEEE-EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCe
Confidence 12345555543 33322 33334456789998 4445 556668899999874 22110 000 12233
Q ss_pred EEecCCCCEEEEecCCCeEEEEEcCCcceeeeecC-CceEEEEEeC-CCC--eEEeeC
Q 041206 298 MLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFS-RREVEVDQIG-PAG--LFFPGD 351 (371)
Q Consensus 298 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s-~~~--~l~~~~ 351 (371)
+...+++++.++....+.|..||..+++.+..+.. ...+++++|. |++ ++++..
T Consensus 204 ~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 204 MCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred eEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 44444555767766778899999998888877764 4689999998 777 444443
No 208
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.28 E-value=6.5e-09 Score=90.66 Aligned_cols=257 Identities=9% Similarity=0.030 Sum_probs=165.6
Q ss_pred ceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceEEEEeCC
Q 041206 68 RFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGS----------RDGRVSVWDRDSGRCVNVITNG 137 (371)
Q Consensus 68 ~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~ 137 (371)
..+.+.+ ..+.+.+.++..-..+ . ++++||+++|+.+. .++.|.+||..+++.+.++..+
T Consensus 59 ~~V~ViD--------~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~ 128 (386)
T 3sjl_D 59 TQQFVID--------GEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELP 128 (386)
T ss_dssp EEEEEEE--------TTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEET
T ss_pred CEEEEEE--------CCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECC
Confidence 4566666 4567788888765555 4 99999999988775 3678999999999999888643
Q ss_pred C----------eeEEEeecCCEEEEec---CCcEEEEEeCCCCeeEEE-------Ee---CCEEEEEeCCCeEEEEeccC
Q 041206 138 A----------EIGCLISEGSWVFLGL---PNAVKSWRVNAASVNALV-------VN---NDLLFAGSEGGVISVWKGTF 194 (371)
Q Consensus 138 ~----------~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~v~~~~-------~~---~~~l~~~~~dg~v~iwd~~~ 194 (371)
. .-..+.++++++++.+ ++.|.++|..+..+..-- +. ...+++.+.||.+.+.++..
T Consensus 129 ~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 129 DAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp TCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred CccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCC
Confidence 2 1345667899888753 578999999998553321 11 22677888999999999986
Q ss_pred CCCcceeeEEEecC----c-ce-EEEEe-cCCceeEecccceeeeeCCCeEEEEECCCce--EEEEee---------c-C
Q 041206 195 VANPFKQVASIRAP----L-WF-CSLSS-SNDTRWNSKEEAAVFEFCGHTTRTWNLDNLE--CVQTLK---------G-H 255 (371)
Q Consensus 195 ~~~~~~~~~~~~~~----~-~v-~~~~~-~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~--~~~~~~---------~-~ 255 (371)
.. +........ . ++ ....| .++|+++.. +.+|.|++.|+.+.. .+..+. + .
T Consensus 209 ~g---~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~v-------s~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~ 278 (386)
T 3sjl_D 209 EG---TPEITHTEVFHPEDEFLINHPAYSQKAGRLVWP-------TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR 278 (386)
T ss_dssp SS---CCEEEECCCCSCTTSCBCSCCEEETTTTEEEEE-------BTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE
T ss_pred CC---eEEEeecceeccccccccccceeEcCCCcEEEE-------eCCCEEEEEECCCCcceeecceecccccccccccc
Confidence 32 221111111 1 22 12344 367764445 678999999997653 333332 0 1
Q ss_pred CCcEEEEEEc--CCeEEEEeC----------CCcEEEEEccCCCCccee---cceEEE-EecCCCCEEEE-ecCCCeEEE
Q 041206 256 SDTVTSLLFW--DEYLFSSSL----------DETIKIWLYTHTKNNAEL---SSLFGM-LDAEAKPVLFS-SGKDSAIRL 318 (371)
Q Consensus 256 ~~~v~~~~~~--~~~l~s~~~----------dg~i~iwd~~~~~~~~~~---~~~~~~-~~~~~~~~l~~-~~~d~~i~i 318 (371)
.+....++++ ++.++.... ...|.+.|+.+.+....+ .....+ +++++..+|++ ...++.|.+
T Consensus 279 p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsV 358 (386)
T 3sjl_D 279 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYI 358 (386)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEE
T ss_pred CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEE
Confidence 1122335555 455555432 246889998887753332 122233 44444445555 456899999
Q ss_pred EEcCCcceeeeecCCceEEEEEeCCC
Q 041206 319 YELPSFKLRARIFSRREVEVDQIGPA 344 (371)
Q Consensus 319 wd~~~~~~~~~~~~~~~v~~~~~s~~ 344 (371)
+|..+++.+..+......+.|.+++|
T Consensus 359 iD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 359 HDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp EETTTCCEEEEECCCCSSCCEEEECC
T ss_pred EECCCCcEEEEecCCCCCceeEECCc
Confidence 99999999998886666666666665
No 209
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.27 E-value=1.7e-09 Score=103.90 Aligned_cols=188 Identities=8% Similarity=0.030 Sum_probs=121.2
Q ss_pred CeeEEEEeCC--EEEEEeCC-C----eEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eEecccceeeeeCCCe-
Q 041206 167 SVNALVVNND--LLFAGSEG-G----VISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFCGHT- 237 (371)
Q Consensus 167 ~v~~~~~~~~--~l~~~~~d-g----~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg~- 237 (371)
.+..++|+|+ +|+.+..+ | .|++||+.++ +.......+..+..++|+|||+ |+.+ +.++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg----~~~~~~~~~~~~~~~~wspDg~~l~~~-------~~~~~~ 194 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA----KELPDVLERVKFSCMAWTHDGKGMFYN-------AYPQQD 194 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT----EEEEEEEEEECSCCEEECTTSSEEEEE-------ECCCCS
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCC----CCCcccccCcccceEEEEeCCCEEEEE-------EECCcc
Confidence 3778899998 66655443 3 8999999988 5443222222567899999996 7666 55544
Q ss_pred ---------------EEEEECCCce----EEEEeecCCCcEEEEEEc--CCeEEEEeC-----CCcEEEEEccC------
Q 041206 238 ---------------TRTWNLDNLE----CVQTLKGHSDTVTSLLFW--DEYLFSSSL-----DETIKIWLYTH------ 285 (371)
Q Consensus 238 ---------------i~iwd~~~~~----~~~~~~~~~~~v~~~~~~--~~~l~s~~~-----dg~i~iwd~~~------ 285 (371)
|++|++.+++ .+.....|...+..+.|+ +++|+..+. +..|.+||+..
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 274 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT 274 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccC
Confidence 9999998865 233333355567889998 677776654 56899999876
Q ss_pred CC-Ccce----ecceEEEEecCCCCEEEEecC---CCeEEEEEcCCcce--eeeec-CC--ceEEEEEeCCCC-eEEeeC
Q 041206 286 TK-NNAE----LSSLFGMLDAEAKPVLFSSGK---DSAIRLYELPSFKL--RARIF-SR--REVEVDQIGPAG-LFFPGD 351 (371)
Q Consensus 286 ~~-~~~~----~~~~~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~--~~~~~-~~--~~v~~~~~s~~~-~l~~~~ 351 (371)
+. .... .......++++++.+++.+.. ++.|.+||+.++.. ...+. +. ..+..++|++++ ++++..
T Consensus 275 ~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~ 354 (710)
T 2xdw_A 275 GILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL 354 (710)
T ss_dssp SSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE
T ss_pred CccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEE
Confidence 32 1111 112333456666644444433 34799999987642 22332 32 378889999777 888888
Q ss_pred CCCc--EEEEEccccc
Q 041206 352 ASGS--VGVWKWLLAE 365 (371)
Q Consensus 352 ~dg~--i~iw~~~~~~ 365 (371)
.|+. |.+|++.+++
T Consensus 355 ~~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 355 HDVKNTLQLHDLATGA 370 (710)
T ss_dssp ETTEEEEEEEETTTCC
T ss_pred ECCEEEEEEEECCCCC
Confidence 8885 4556664443
No 210
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.25 E-value=9.6e-08 Score=83.99 Aligned_cols=258 Identities=8% Similarity=-0.053 Sum_probs=150.1
Q ss_pred ccCCCCceeeccCc------------ccccceeEEEEEeeccceeeeeeeecceeecccee------eCCccceEEEEEe
Q 041206 14 KHSEGGETMMSDDD------------DLMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCV------YGDKCRFLHSWVH 75 (371)
Q Consensus 14 ~~sp~g~~l~~~~~------------d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~ 75 (371)
..+|+++++.+... |..+++++..+..... ..++++|...++..... .+..+..|..++
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~--p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD- 103 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD- 103 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCC--CCeEECCCCCEEEEEeccccccccCCCCCeEEEEE-
Confidence 44567765555443 2345666666543222 27788887765432221 123456777777
Q ss_pred ccCCCCccCCceeeEeeeCc-------cCCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceEEE-EeCCCeeEEEee
Q 041206 76 SVDGDNTTNSLATLMKLNGH-------KKAVTNVGLPSGSNKLYSGSR--DGRVSVWDRDSGRCVNV-ITNGAEIGCLIS 145 (371)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~h-------~~~V~~~~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~ 145 (371)
....+.+.++.-- ......++|+|||++|+.+.. ++.|.++| .+++.+.. +.....+. +.+
T Consensus 104 -------~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~-~~~ 174 (373)
T 2mad_H 104 -------PVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYH-IHP 174 (373)
T ss_pred -------CCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEE-EEe
Confidence 3345555554321 123568999999999998874 47899999 99999888 76654432 233
Q ss_pred cC--CEEEEecCCcEEEEEeCCCCeeEE-----------------EEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEE
Q 041206 146 EG--SWVFLGLPNAVKSWRVNAASVNAL-----------------VVNND--LLFAGSEGGVISVWKGTFVANPFKQVAS 204 (371)
Q Consensus 146 ~~--~~~~~~~~~~i~~~~~~~~~v~~~-----------------~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 204 (371)
.+ .++....++.+.+++. ++.+... .+.++ .++..+..+.+.+.|+..... +....
T Consensus 175 ~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~--~v~~~ 251 (373)
T 2mad_H 175 GAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA--TNKAP 251 (373)
T ss_pred CCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc--eEeee
Confidence 33 2334456888888888 6654421 11222 333334678899999875421 11222
Q ss_pred EecC----------c-ceEEEEecCCce-eEecccceeee---eCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CC
Q 041206 205 IRAP----------L-WFCSLSSSNDTR-WNSKEEAAVFE---FCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DE 267 (371)
Q Consensus 205 ~~~~----------~-~v~~~~~~~~~~-l~~~~~~~~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~ 267 (371)
+... . ....+.++|++. ++.+.+...-. ..++.|.++|+.+++.+.++.. .....++.|+ ++
T Consensus 252 ~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~ 330 (373)
T 2mad_H 252 IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGG 330 (373)
T ss_pred eeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCC
Confidence 2110 1 233477888874 54430000000 0246899999999999888863 3346677777 44
Q ss_pred -eEEEEe-CCCcEEEEEccCCC
Q 041206 268 -YLFSSS-LDETIKIWLYTHTK 287 (371)
Q Consensus 268 -~l~s~~-~dg~i~iwd~~~~~ 287 (371)
+++++. .++.|.++|..+.+
T Consensus 331 ~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 331 PDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred eEEEEEcCCCCeEEEEECCCCC
Confidence 555555 36777777766554
No 211
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.25 E-value=7.4e-09 Score=88.64 Aligned_cols=228 Identities=14% Similarity=0.077 Sum_probs=137.8
Q ss_pred eeEeeeCccCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCC
Q 041206 88 TLMKLNGHKKAVTNVGLPSGSN-KLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAA 166 (371)
Q Consensus 88 ~~~~l~~h~~~V~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 166 (371)
.+..+..+........|+|+++ ++++...++.|..|+. +++. ..+.. ...
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~---------------------------~~~ 86 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLD---------------------------ATA 86 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEE---------------------------SCS
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeC---------------------------CCC
Confidence 3444555566778999999998 6677778899999997 4543 22221 223
Q ss_pred CeeEEEEeCC-EEEEEe-CCCeEEEEeccCCCCcceeeE-EEecCc--ceEEEEecCCceeEecccceeeeeC-------
Q 041206 167 SVNALVVNND-LLFAGS-EGGVISVWKGTFVANPFKQVA-SIRAPL--WFCSLSSSNDTRWNSKEEAAVFEFC------- 234 (371)
Q Consensus 167 ~v~~~~~~~~-~l~~~~-~dg~v~iwd~~~~~~~~~~~~-~~~~~~--~v~~~~~~~~~~l~~~~~~~~~~~~------- 234 (371)
.+..++++++ .++++. .++.|.+|+.. +. ...+. ...... .+..+++.++|.++....... ..
T Consensus 87 ~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~--~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g--~~~~~~~~~ 161 (305)
T 3dr2_A 87 FTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ--AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFG--LRKPSQGCP 161 (305)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SC--EEEEECEETTEECSCCCCEEECTTSCEEEECCSGG--GSCGGGSCC
T ss_pred ccceeeECCCCCEEEEECCCCEEEEECCC-CC--EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCC--ccccccccc
Confidence 4788889887 555554 45789999875 31 11111 111111 467899999998554100000 32
Q ss_pred ------CCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCC------CcEEEEEccCCCCc--cee-----c
Q 041206 235 ------GHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLD------ETIKIWLYTHTKNN--AEL-----S 293 (371)
Q Consensus 235 ------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d------g~i~iwd~~~~~~~--~~~-----~ 293 (371)
.+.|+.+|..+++..... .......++|+ ++.|+.+... +.|.+|++...... ... .
T Consensus 162 ~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~ 239 (305)
T 3dr2_A 162 ADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG 239 (305)
T ss_dssp CCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS
T ss_pred cccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC
Confidence 357888888766654332 34456788998 4566666554 68999997643210 000 0
Q ss_pred ceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCCCC
Q 041206 294 SLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDASG 354 (371)
Q Consensus 294 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg 354 (371)
....+...++++ |.++..+ .|.+|+. .++.+..+.....+..++|+|++ .|..++.++
T Consensus 240 ~pdgi~~d~~G~-lwv~~~~-gv~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 240 LPDGFCVDRGGW-LWSSSGT-GVCVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp CCCSEEECTTSC-EEECCSS-EEEEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEETTE
T ss_pred CCCeEEECCCCC-EEEecCC-cEEEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcCCe
Confidence 011223334454 4455544 4999998 45666666554568999999988 666665553
No 212
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.24 E-value=1.1e-09 Score=95.56 Aligned_cols=243 Identities=8% Similarity=-0.078 Sum_probs=153.4
Q ss_pred cCCceeeEeeeCccCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEE
Q 041206 83 TNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGS----------RDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFL 152 (371)
Q Consensus 83 ~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (371)
..+++.+.++..-..+ .+.++||+++++.+. .++.|.+||..+++.+.++..+..-...
T Consensus 53 ~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~--------- 121 (368)
T 1mda_H 53 AGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS--------- 121 (368)
T ss_dssp TTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC---------
T ss_pred CCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc---------
Confidence 5677888888766666 799999999999886 3688999999999999988643100000
Q ss_pred ecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeC--CCeEEE--EeccCCCCcceeeEEEecCcceEEEEecCCc--eeEe
Q 041206 153 GLPNAVKSWRVNAASVNALVVNND--LLFAGSE--GGVISV--WKGTFVANPFKQVASIRAPLWFCSLSSSNDT--RWNS 224 (371)
Q Consensus 153 ~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~--dg~v~i--wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~ 224 (371)
.......+.++|+ +++++.. +..|.+ +|..+ +..+..... ....|++ .+++
T Consensus 122 -----------~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-------v~~i~v~~~---~~~~p~g~~~~~~ 180 (368)
T 1mda_H 122 -----------VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-------DQLTKSASC---FHIHPGAAATHYL 180 (368)
T ss_dssp -----------BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-------EEEEECSSC---CCCEEEETTEEEC
T ss_pred -----------cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-------ceEEECCCc---eEEccCCCeEEEE
Confidence 0012456778877 6666654 456888 88765 222221111 2233444 2556
Q ss_pred cccceeeeeCCCeEEEEECCC-----ceEEE----EeecCCCcEEEEEEc-CCeEEEEeCCCcEEEEEccCCCCc--c--
Q 041206 225 KEEAAVFEFCGHTTRTWNLDN-----LECVQ----TLKGHSDTVTSLLFW-DEYLFSSSLDETIKIWLYTHTKNN--A-- 290 (371)
Q Consensus 225 ~~~~~~~~~~dg~i~iwd~~~-----~~~~~----~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~--~-- 290 (371)
. +.|+.+.+.|+.+ ++... .+.....+. .+. +..++..+. +.+.+.|+...... .
T Consensus 181 ~-------~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~ 249 (368)
T 1mda_H 181 G-------SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGATMKAAI 249 (368)
T ss_dssp C-------CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCCEEECCC
T ss_pred E-------cCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcceEEEEE
Confidence 6 7788888888876 44331 122222343 233 555555555 88999997543210 0
Q ss_pred ------------eecceE-EEEecCCCCEEEEec---C-----CCeEEEEEcCCcceeeeecCCceEEEEEeCCCC--eE
Q 041206 291 ------------ELSSLF-GMLDAEAKPVLFSSG---K-----DSAIRLYELPSFKLRARIFSRREVEVDQIGPAG--LF 347 (371)
Q Consensus 291 ------------~~~~~~-~~~~~~~~~~l~~~~---~-----d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~--~l 347 (371)
...... ..+.+++++++++.. . ++.+.++|+.+.+.+..+........++|+||| .+
T Consensus 250 ~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~ 329 (368)
T 1mda_H 250 DGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDN 329 (368)
T ss_dssp CSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEE
T ss_pred EeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEE
Confidence 000100 124555553333333 2 235669999999999888766689999999999 56
Q ss_pred EeeC-CCCcEEEEEccccceec
Q 041206 348 FPGD-ASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 348 ~~~~-~dg~i~iw~~~~~~~~~ 368 (371)
++.. .++.|.++|+.+.+..+
T Consensus 330 va~~~~~~~VsVID~~t~kvv~ 351 (368)
T 1mda_H 330 YANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp EEEETTTTEEEEEESSSCEEEE
T ss_pred EEccCCCCeEEEEECCCCcEEE
Confidence 6666 59999999999887654
No 213
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.22 E-value=4.3e-11 Score=105.42 Aligned_cols=197 Identities=14% Similarity=0.031 Sum_probs=111.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEE-eCC-EEEEEeCC
Q 041206 107 GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVV-NND-LLFAGSEG 184 (371)
Q Consensus 107 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~-~~~-~l~~~~~d 184 (371)
++..+++++.||.|+.||..+|+.+..+.. .. +.+..+ ..+ .+++++.|
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~----------------------------~~s~p~~~~g~~~v~~s~d 58 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DP----------------------------VLQVPTHVEEPAFLPDPND 58 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CC----------------------------SCCCC-----CCEEECTTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CC----------------------------ceecceEcCCCEEEEeCCC
Confidence 577999999999999999999999888765 22 111111 122 56667889
Q ss_pred CeEEEEeccCCCCcceeeEEEecCc--ceE-EEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEE
Q 041206 185 GVISVWKGTFVANPFKQVASIRAPL--WFC-SLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTS 261 (371)
Q Consensus 185 g~v~iwd~~~~~~~~~~~~~~~~~~--~v~-~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 261 (371)
|.|+.||..++ +.+..+..+. .+. +..+..++.++++ +.++.++.||.++|+.+..+..+.. + .
T Consensus 59 g~l~a~d~~tG----~~~w~~~~~~~~~~~~sp~~~~~~~v~~g-------~~dg~v~a~D~~tG~~~w~~~~~~~-~-~ 125 (369)
T 2hz6_A 59 GSLYTLGSKNN----EGLTKLPFTIPELVQASPCRSSDGILYMG-------KKQDIWYVIDLLTGEKQQTLSSAFA-D-S 125 (369)
T ss_dssp CCEEEC---------CCSEECSCCHHHHHTTCSCC-----CCCC-------EEEEEEEEECCC-----------------
T ss_pred CEEEEEECCCC----ceeeeeeccCccccccCceEecCCEEEEE-------eCCCEEEEEECCCCcEEEEecCCCc-c-c
Confidence 99999999887 3433333322 111 1112234567788 8999999999999999887765532 1 1
Q ss_pred EEEcCCeEEEEeCCCcEEEEEccCCCCcceec--ceEEEEecCC---CCEEEEecCCCeEEEEEcCCcceeeeecCCceE
Q 041206 262 LLFWDEYLFSSSLDETIKIWLYTHTKNNAELS--SLFGMLDAEA---KPVLFSSGKDSAIRLYELPSFKLRARIFSRREV 336 (371)
Q Consensus 262 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v 336 (371)
.+-.++.+++++.|+.|+.||.++.+..-... .........+ ...+++++.+|.|+.||..+++.+.+.....++
T Consensus 126 ~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv 205 (369)
T 2hz6_A 126 LSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPV 205 (369)
T ss_dssp -------EEEEEEEEEEECCCSSSSSCCCEEEEEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCE
T ss_pred ccccCCEEEEEecCCEEEEEECCCCCEEEeEecccccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCce
Confidence 11146788899999999999988776532221 1111111111 135777888999999999999998887655555
Q ss_pred E-EEEeCCCC
Q 041206 337 E-VDQIGPAG 345 (371)
Q Consensus 337 ~-~~~~s~~~ 345 (371)
. ...+++++
T Consensus 206 ~~~~~~~~dg 215 (369)
T 2hz6_A 206 VAFYVWQREG 215 (369)
T ss_dssp EEEEECTTSS
T ss_pred EEEEEecCCc
Confidence 4 34566676
No 214
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.21 E-value=1.2e-09 Score=94.60 Aligned_cols=214 Identities=13% Similarity=0.030 Sum_probs=142.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC-EEEEEeCCCe
Q 041206 108 SNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND-LLFAGSEGGV 186 (371)
Q Consensus 108 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~-~l~~~~~dg~ 186 (371)
+..|..++.++.|..+|.. ++.......... .+.++...++ .+.+++.++.
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~---------------------------~~~~~~~~~~g~l~vgt~~~~ 158 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKA---------------------------IYATPIVSEDGTIYVGSNDNY 158 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSC---------------------------CCSCCEECTTSCEEEECTTSE
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCc---------------------------eeeeeEEcCCCEEEEEcCCCE
Confidence 4567777778889999887 776655543221 2445556644 7778888899
Q ss_pred EEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc
Q 041206 187 ISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW 265 (371)
Q Consensus 187 v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 265 (371)
|..+|.. + +....+.... .+.++...+++.++.+ + +.+..+| .+++.+..+......+.++...
T Consensus 159 l~~~d~~-g----~~~~~~~~~~~~~~~~~~d~~g~l~v~-------t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~ 223 (330)
T 3hxj_A 159 LYAINPD-G----TEKWRFKTNDAITSAASIGKDGTIYFG-------S--DKVYAIN-PDGTEKWNFYAGYWTVTRPAIS 223 (330)
T ss_dssp EEEECTT-S----CEEEEEECSSCCCSCCEECTTCCEEEE-------S--SSEEEEC-TTSCEEEEECCSSCCCSCCEEC
T ss_pred EEEECCC-C----CEeEEEecCCCceeeeEEcCCCEEEEE-------e--CEEEEEC-CCCcEEEEEccCCcceeceEEC
Confidence 9999988 5 4555555444 6777777788888888 7 8899999 7777777766666677788777
Q ss_pred -CCeEEEEeCCCcEEEEEccCCCCcce---ecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEE
Q 041206 266 -DEYLFSSSLDETIKIWLYTHTKNNAE---LSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQ 340 (371)
Q Consensus 266 -~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~ 340 (371)
+..+..++.++.+..+|......... ...........++ .|..++.+|.|..+|. +++.+..+. ....+.++.
T Consensus 224 ~~g~l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~ 301 (330)
T 3hxj_A 224 EDGTIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPV 301 (330)
T ss_dssp TTSCEEEEETTTEEEEECTTSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCE
T ss_pred CCCeEEEEcCCCeEEEECCCCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceE
Confidence 44788888888888887422111000 0001111222234 5777888889999996 666665554 345567777
Q ss_pred eCCCCeEEeeCCCCcEEEEEccccce
Q 041206 341 IGPAGLFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 341 ~s~~~~l~~~~~dg~i~iw~~~~~~~ 366 (371)
..+++.|..++.+|.+++......+.
T Consensus 302 ~d~~g~l~~gt~~G~~~~~~~~~~~~ 327 (330)
T 3hxj_A 302 IDENGTIYFGTRNGKFYALFNLEHHH 327 (330)
T ss_dssp ECTTCCEEEECTTSCEEEEEC-----
T ss_pred EcCCCEEEEEcCCCeEEEEecccccc
Confidence 87888777889999999988765543
No 215
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.19 E-value=6.7e-09 Score=98.84 Aligned_cols=249 Identities=11% Similarity=0.060 Sum_probs=160.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeCCCee------------EEEeecCCEEEE-ecCCcEEEEEeCCCCee-EEEE
Q 041206 108 SNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEI------------GCLISEGSWVFL-GLPNAVKSWRVNAASVN-ALVV 173 (371)
Q Consensus 108 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~-~~~~~i~~~~~~~~~v~-~~~~ 173 (371)
+..|+.++.++.|.-+|..+|+.+.++...... ......+..+++ +.++.+..+|..++.+. ....
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~ 149 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDT 149 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence 567888888899999999999999988654321 111223444544 56889999998887432 2221
Q ss_pred ------------e----CCEEEEEe------CCCeEEEEeccCCCCcceeeEEEecC-----------------------
Q 041206 174 ------------N----NDLLFAGS------EGGVISVWKGTFVANPFKQVASIRAP----------------------- 208 (371)
Q Consensus 174 ------------~----~~~l~~~~------~dg~v~iwd~~~~~~~~~~~~~~~~~----------------------- 208 (371)
. .+.+++++ .+|.|..||..++ +.+-.+...
T Consensus 150 ~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG----~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 225 (689)
T 1yiq_A 150 RADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETG----KEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD 225 (689)
T ss_dssp CSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTC----CEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred cCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCC----cEEEEecccCCCcccccccccccccccccCCc
Confidence 1 22555554 3689999999998 444333310
Q ss_pred --------c-ceEEEEecCCc-eeEecccceeeeeCCC-------------------eEEEEECCCceEEEEeec--CC-
Q 041206 209 --------L-WFCSLSSSNDT-RWNSKEEAAVFEFCGH-------------------TTRTWNLDNLECVQTLKG--HS- 256 (371)
Q Consensus 209 --------~-~v~~~~~~~~~-~l~~~~~~~~~~~~dg-------------------~i~iwd~~~~~~~~~~~~--~~- 256 (371)
. ....++++|+. .++.+ ..++ .|..+|.++++.+..++. |.
T Consensus 226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~-------~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~ 298 (689)
T 1yiq_A 226 AYVEQGGGGTAWDSFAYDPELNLLYIG-------VGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDA 298 (689)
T ss_dssp THHHHCEECCCCSCEEEETTTTEEEEE-------CCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCC
T ss_pred eeeecCCCCccccceeEcCCCCEEEEe-------CCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccc
Confidence 0 11256777754 46666 5554 499999999999887764 21
Q ss_pred ------CcE--EEEEEcCC---eEEEEeCCCcEEEEEccCCCCccee--------cce----------------------
Q 041206 257 ------DTV--TSLLFWDE---YLFSSSLDETIKIWLYTHTKNNAEL--------SSL---------------------- 295 (371)
Q Consensus 257 ------~~v--~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~--------~~~---------------------- 295 (371)
.+. ..+.+.++ .++.++.+|.++++|.++.+..... ..+
T Consensus 299 wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~ 378 (689)
T 1yiq_A 299 WDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKR 378 (689)
T ss_dssp SCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSC
T ss_pred ccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCe
Confidence 111 12333443 7889999999999997666531000 000
Q ss_pred --------------EEEEecCCCCEEEEecC---------------------------------------------CCeE
Q 041206 296 --------------FGMLDAEAKPVLFSSGK---------------------------------------------DSAI 316 (371)
Q Consensus 296 --------------~~~~~~~~~~~l~~~~~---------------------------------------------d~~i 316 (371)
...+.+..+ ++++... +|.|
T Consensus 379 ~~~~p~~~Gg~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l 457 (689)
T 1yiq_A 379 NLVTPAFWGAHDWQPMSYNPDTG-LVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKL 457 (689)
T ss_dssp EEESSCTTCSSCSSCCEEETTTT-EEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEE
T ss_pred eEeCCCcccccCCCcceECCCCC-EEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeE
Confidence 011333333 5554421 3789
Q ss_pred EEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccceec
Q 041206 317 RLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 317 ~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
+.||+.+++.+.++....+...-.+...+ +++.|+.||.++.||..+++.++
T Consensus 458 ~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw 510 (689)
T 1yiq_A 458 IAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLW 510 (689)
T ss_dssp EEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccce
Confidence 99999999999888755544443455555 88889999999999999988765
No 216
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.17 E-value=5.3e-07 Score=76.38 Aligned_cols=255 Identities=11% Similarity=0.065 Sum_probs=151.2
Q ss_pred eeccceeeeeeeecce-eeccceeeCCccceEEEEEeccCCCCccCCceeeE-eeeCccCCeEEEEEcCCCCEEEEEeCC
Q 041206 40 MFGFGLAAMAIRVCNN-WISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLM-KLNGHKKAVTNVGLPSGSNKLYSGSRD 117 (371)
Q Consensus 40 ~h~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~l~~h~~~V~~~~~~~~~~~l~s~~~d 117 (371)
.+...+.+++..+.+. |+. ....+.+..|+ .. .+... .+..+...+.+++++++++++++...+
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~-----~~~~~~v~~~d-------~~--~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~ 77 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWIT-----QHKANMISCIN-------LD--GKITEYPLPTPDAKVMCLTISSDGEVWFTENAA 77 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEE-----ETTTTEEEEEC-------TT--CCEEEEECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred CcCCCccceEECCCCCEEEE-----ecCCCcEEEEc-------CC--CCeEEecCCcccCceeeEEECCCCCEEEeCCCC
Confidence 3445666777666544 433 22345666766 12 22221 223355789999999999988887778
Q ss_pred CcEEEEECCCCceEEEEe---CCCeeEEEee--cCCEEEEe-cCCcEEEEEeCC-----------CCeeEEEEeCC-EEE
Q 041206 118 GRVSVWDRDSGRCVNVIT---NGAEIGCLIS--EGSWVFLG-LPNAVKSWRVNA-----------ASVNALVVNND-LLF 179 (371)
Q Consensus 118 g~v~iwd~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~-~~~~i~~~~~~~-----------~~v~~~~~~~~-~l~ 179 (371)
+.|..||.. ++. ..+. ....+..+.. ++.++++. .++.+..|+... ..+.+++++++ .+.
T Consensus 78 ~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~ 155 (299)
T 2z2n_A 78 NKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALW 155 (299)
T ss_dssp TEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEE
T ss_pred CeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEE
Confidence 899999976 443 2332 2234455554 35555554 356777777621 24677888877 444
Q ss_pred E-EeCCCeEEEEeccCCCCcceeeEE-EecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceEEEE-eecC
Q 041206 180 A-GSEGGVISVWKGTFVANPFKQVAS-IRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQT-LKGH 255 (371)
Q Consensus 180 ~-~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~-~~~~ 255 (371)
. ...++.|..||. ++ +.... ..... .+.++++.+++.++.+ ...++.|.+||. +++.... +..+
T Consensus 156 v~~~~~~~i~~~~~-~g----~~~~~~~~~~~~~~~~i~~~~~g~l~v~------~~~~~~i~~~~~-~g~~~~~~~~~~ 223 (299)
T 2z2n_A 156 FTENQNNAIGRITE-SG----DITEFKIPTPASGPVGITKGNDDALWFV------EIIGNKIGRITT-SGEITEFKIPTP 223 (299)
T ss_dssp EEETTTTEEEEECT-TC----CEEEEECSSTTCCEEEEEECTTSSEEEE------ETTTTEEEEECT-TCCEEEEECSST
T ss_pred EEeCCCCEEEEEcC-CC----cEEEeeCCCCCCcceeEEECCCCCEEEE------ccCCceEEEECC-CCcEEEEECCCC
Confidence 4 445689999998 44 22221 22233 7889999999885544 045789999999 6654322 3334
Q ss_pred CCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC----cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCc
Q 041206 256 SDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN----NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSF 324 (371)
Q Consensus 256 ~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 324 (371)
...+.+++++ ++++++...++.|..||...... .........+.. +++.+.++.. .+.+..++.++.
T Consensus 224 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 224 NARPHAITAGAGIDLWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp TCCEEEEEECSTTCEEEEETTTTEEEEEETTTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred CCCceeEEECCCCCEEEeccCCceEEEECCCCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 5678899998 45555555778899999632100 011123344444 5554555544 567777777654
No 217
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.16 E-value=8.3e-09 Score=98.00 Aligned_cols=259 Identities=12% Similarity=0.094 Sum_probs=158.7
Q ss_pred CccceEEEEEeccCCCCccCCceeeEeeeCccCC-----------eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEE
Q 041206 65 DKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKA-----------VTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNV 133 (371)
Q Consensus 65 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~-----------V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 133 (371)
..++.+..++ ..+++.+.+++..... -..+++ ++..|+.++.|+.|..+|..+|+.+..
T Consensus 84 ~~~~~v~AlD--------~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 153 (677)
T 1kb0_A 84 ASWSVVHAID--------TRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWH 153 (677)
T ss_dssp CGGGCEEEEE--------TTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCCCeEEEEE--------CCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 3455666666 4566777766543210 112233 456888889999999999999999988
Q ss_pred EeCC-CeeEEEeecCCEEEEecCCcEEEEEeCCCCe-eEEEEeCCEEEEEeC------CCeEEEEeccCCCCcceeeEEE
Q 041206 134 ITNG-AEIGCLISEGSWVFLGLPNAVKSWRVNAASV-NALVVNNDLLFAGSE------GGVISVWKGTFVANPFKQVASI 205 (371)
Q Consensus 134 ~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v-~~~~~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~ 205 (371)
+... .... ...+ ....+..+.+++++. ++.|+.||..++ +.+-.+
T Consensus 154 ~~~~~~~~~-----------------------~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG----~~~W~~ 206 (677)
T 1kb0_A 154 QNTFEGQKG-----------------------SLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETG----ERKWRW 206 (677)
T ss_dssp EETTTTCCS-----------------------SCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTC----CEEEEE
T ss_pred ecCCcCcCc-----------------------CcccccCcEEECCEEEEEecccccCCCCEEEEEECCCC----cEEEEe
Confidence 8754 1100 0000 011122334444443 577778887777 333333
Q ss_pred ecCc---------------------------------ceEEEEecCCc-eeEecccceeeeeCCC---------------
Q 041206 206 RAPL---------------------------------WFCSLSSSNDT-RWNSKEEAAVFEFCGH--------------- 236 (371)
Q Consensus 206 ~~~~---------------------------------~v~~~~~~~~~-~l~~~~~~~~~~~~dg--------------- 236 (371)
.... ....+++++++ .++.+ ..++
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~-------~~~~~~w~~~~~~~~~gd~ 279 (677)
T 1kb0_A 207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVG-------TGNGSPWSHKVRSPKGGDN 279 (677)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEE-------CCCEESSCHHHHSTTCCCC
T ss_pred ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEE-------CCCCccccCCCCCccCCCC
Confidence 2211 11356777765 45554 4332
Q ss_pred ----eEEEEECCCceEEEEeec--CC--------CcE-EEEEEcC---CeEEEEeCCCcEEEEEccCCCCcceec-----
Q 041206 237 ----TTRTWNLDNLECVQTLKG--HS--------DTV-TSLLFWD---EYLFSSSLDETIKIWLYTHTKNNAELS----- 293 (371)
Q Consensus 237 ----~i~iwd~~~~~~~~~~~~--~~--------~~v-~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~----- 293 (371)
.|..+|.++++.+..++. |. .++ ......+ ..++.++.+|.++++|.++.+......
T Consensus 280 ~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~ 359 (677)
T 1kb0_A 280 LYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVN 359 (677)
T ss_dssp TTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS
T ss_pred eeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccC
Confidence 599999999999877663 21 122 1222234 678999999999999977665311100
Q ss_pred c----------e-------------------------EEEEecCCCCEEEEecC--------------------------
Q 041206 294 S----------L-------------------------FGMLDAEAKPVLFSSGK-------------------------- 312 (371)
Q Consensus 294 ~----------~-------------------------~~~~~~~~~~~l~~~~~-------------------------- 312 (371)
. + ...+.+..+ ++++...
T Consensus 360 ~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 438 (677)
T 1kb0_A 360 WASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG-LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGT 438 (677)
T ss_dssp SEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT-EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGG
T ss_pred cccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC-EEEEeChhcceeeeccccccccccccccccccc
Confidence 0 0 011233444 6655432
Q ss_pred -----------------CCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccceec
Q 041206 313 -----------------DSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 313 -----------------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
.+.|..||+.+++.+.++....++....+..++ +++.++.||.+++||..+++.+.
T Consensus 439 ~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw 512 (677)
T 1kb0_A 439 GWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW 512 (677)
T ss_dssp TCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceee
Confidence 278999999999999888765555555566666 88888999999999999987664
No 218
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.13 E-value=2.1e-08 Score=96.73 Aligned_cols=236 Identities=11% Similarity=0.008 Sum_probs=138.9
Q ss_pred ceeeeeeeecceeeccceeeCCc-cceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCc---
Q 041206 44 GLAAMAIRVCNNWISDSCVYGDK-CRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGR--- 119 (371)
Q Consensus 44 ~v~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~--- 119 (371)
.+..++++|.+.++.-....++. ...|++|+ ..+++.+.. ..+...+..++|+|| +.|+.++.++.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d--------l~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~ 233 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG--------VADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEG 233 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEE--------TTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC---
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEE--------CCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccc
Confidence 56677888887765544433333 35688888 233444332 212223467899999 99988877654
Q ss_pred -----------EEEEECCCCce--EEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEeCC
Q 041206 120 -----------VSVWDRDSGRC--VNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGSEG 184 (371)
Q Consensus 120 -----------v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~~d 184 (371)
|++|++.+++. ...+.... +...+..+.++|+ +|+..+.+
T Consensus 234 ~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~-------------------------~~~~~~~~~~SpDG~~l~~~~~~ 288 (741)
T 1yr2_A 234 QAFQALNYNQTVWLHRLGTPQSADQPVFATPE-------------------------LPKRGHGASVSSDGRWVVITSSE 288 (741)
T ss_dssp -----CCCCCEEEEEETTSCGGGCEEEECCTT-------------------------CTTCEEEEEECTTSCEEEEEEEC
T ss_pred cccccCCCCCEEEEEECCCCchhCEEEeccCC-------------------------CCeEEEEEEECCCCCEEEEEEEc
Confidence 88888877652 11111100 1113677888888 56665543
Q ss_pred -----CeEEEEeccCCCCccee-eEEEecCc-ceEEEEecCCce-eEecccceeeeeC----CCeEEEEECCCc--eEEE
Q 041206 185 -----GVISVWKGTFVANPFKQ-VASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFC----GHTTRTWNLDNL--ECVQ 250 (371)
Q Consensus 185 -----g~v~iwd~~~~~~~~~~-~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~----dg~i~iwd~~~~--~~~~ 250 (371)
..|++||+.++. .. ...+..+. .+.... +|++. |+.. +. .+.|.+||+.++ +...
T Consensus 289 ~~~~~~~l~~~d~~~~~---~~~~~~l~~~~~~~~~~~-~~dg~~l~~~-------s~~~~~~~~l~~~d~~~~~~~~~~ 357 (741)
T 1yr2_A 289 GTDPVNTVHVARVTNGK---IGPVTALIPDLKAQWDFV-DGVGDQLWFV-------SGDGAPLKKIVRVDLSGSTPRFDT 357 (741)
T ss_dssp TTCSCCEEEEEEEETTE---ECCCEEEECSSSSCEEEE-EEETTEEEEE-------ECTTCTTCEEEEEECSSSSCEEEE
T ss_pred cCCCcceEEEEECCCCC---CcccEEecCCCCceEEEE-eccCCEEEEE-------ECCCCCCCEEEEEeCCCCccccEE
Confidence 489999998751 12 34454444 444443 36664 5544 33 456999999874 4444
Q ss_pred EeecCCCcEEEEEEc-CCeEEEEeCCCcEEEEEccCC-CCcce-----ecceEEEE-ecCCCCEEEEec---CCCeEEEE
Q 041206 251 TLKGHSDTVTSLLFW-DEYLFSSSLDETIKIWLYTHT-KNNAE-----LSSLFGML-DAEAKPVLFSSG---KDSAIRLY 319 (371)
Q Consensus 251 ~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~-~~~~~-----~~~~~~~~-~~~~~~~l~~~~---~d~~i~iw 319 (371)
.+..+...+..+.+. +.++++...|+..+||.+... ..... ...+.... .+++..++++.+ ..+.|++|
T Consensus 358 l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~ 437 (741)
T 1yr2_A 358 VVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLAL 437 (741)
T ss_dssp EECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEE
T ss_pred EecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEE
Confidence 455555567777777 557778888998888865522 11111 11233333 344443444433 34789999
Q ss_pred EcCCcc
Q 041206 320 ELPSFK 325 (371)
Q Consensus 320 d~~~~~ 325 (371)
|+.+++
T Consensus 438 d~~tg~ 443 (741)
T 1yr2_A 438 DPATAK 443 (741)
T ss_dssp ETTTTE
T ss_pred ECCCCc
Confidence 998866
No 219
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.12 E-value=1.8e-09 Score=93.35 Aligned_cols=241 Identities=12% Similarity=0.088 Sum_probs=154.9
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCee-EEEee-cCCEEEEecCCcEEEEEeCCC----------C
Q 041206 100 TNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEI-GCLIS-EGSWVFLGLPNAVKSWRVNAA----------S 167 (371)
Q Consensus 100 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~~~~----------~ 167 (371)
.+..+..++ .|..++.++.|..|| .+++....+..+... ..+.. .+..++++..+ +..+|.... .
T Consensus 23 ~~~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~-l~~~d~~g~~~~~~~~~~~~ 99 (330)
T 3hxj_A 23 SSPILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK-VYAINPDGTEKWRFDTKKAI 99 (330)
T ss_dssp CCCEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE-EEEECCCGGGGGGSCC----
T ss_pred cCceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc-EEEECCCCcEEEEEECCCCc
Confidence 344454555 567777888899999 888887665544333 33444 35566666666 777775222 1
Q ss_pred eeEEEEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCc
Q 041206 168 VNALVVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNL 246 (371)
Q Consensus 168 v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~ 246 (371)
.....+....+.+++.++.|..+|.. + +......... .+.++...+++.++.+ +.++.|..+|.. +
T Consensus 100 ~~~~~~~~~~l~v~t~~~~l~~~d~~-g----~~~~~~~~~~~~~~~~~~~~~g~l~vg-------t~~~~l~~~d~~-g 166 (330)
T 3hxj_A 100 VSDFTIFEDILYVTSMDGHLYAINTD-G----TEKWRFKTKKAIYATPIVSEDGTIYVG-------SNDNYLYAINPD-G 166 (330)
T ss_dssp -CCEEEETTEEEEECTTSEEEEECTT-S----CEEEEEECSSCCCSCCEECTTSCEEEE-------CTTSEEEEECTT-S
T ss_pred ccCceEECCEEEEEecCCEEEEEcCC-C----CEEEEEcCCCceeeeeEEcCCCEEEEE-------cCCCEEEEECCC-C
Confidence 22333445588889999999999988 5 4444444444 5667777778888888 888999999999 8
Q ss_pred eEEEEeecCCCcEEEEEEc-CCeEEEEeCCCcEEEEEccCCCCcce----ecceEEEEecCCCCEEEEecCCCeEEEEEc
Q 041206 247 ECVQTLKGHSDTVTSLLFW-DEYLFSSSLDETIKIWLYTHTKNNAE----LSSLFGMLDAEAKPVLFSSGKDSAIRLYEL 321 (371)
Q Consensus 247 ~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 321 (371)
+.+..+......+.++... +..++.++ +.+..+| ...+..-. ...+..+...+++ .+..++.++.+..+|.
T Consensus 167 ~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~~gl~~~~~ 242 (330)
T 3hxj_A 167 TEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDG-TIYVTSLDGHLYAINP 242 (330)
T ss_dssp CEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTS-CEEEEETTTEEEEECT
T ss_pred CEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCC-eEEEEcCCCeEEEECC
Confidence 8777777666667777775 55566666 7788888 33321100 0112222333344 4666777788888875
Q ss_pred CCcceeeeecC-CceEEEEEeCCCCeEEeeCCCCcEEEEEc
Q 041206 322 PSFKLRARIFS-RREVEVDQIGPAGLFFPGDASGSVGVWKW 361 (371)
Q Consensus 322 ~~~~~~~~~~~-~~~v~~~~~s~~~~l~~~~~dg~i~iw~~ 361 (371)
+++.+..+.. ...+..+.+.+++.|..++.+|.|..+|.
T Consensus 243 -~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 243 -DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP 282 (330)
T ss_dssp -TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT
T ss_pred -CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC
Confidence 4555555443 23334456666677777888888998886
No 220
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.11 E-value=4.6e-08 Score=85.16 Aligned_cols=234 Identities=13% Similarity=0.081 Sum_probs=142.1
Q ss_pred ceeeEeeeCccCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEe
Q 041206 86 LATLMKLNGHKKAVTNVGLPSGSNKLYSGS--RDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRV 163 (371)
Q Consensus 86 ~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 163 (371)
.+.+..+. ..+..++++|+++++++.. .++.++||.+.+++. ..++..... . .-
T Consensus 9 ~~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~------~--------------~~ 64 (343)
T 2qe8_A 9 LEVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGN------A--------------II 64 (343)
T ss_dssp CEEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSS------C--------------CC
T ss_pred eEEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccC------c--------------cc
Confidence 34455544 6899999999999998864 234366666554442 222210000 0 00
Q ss_pred CCCCeeEEEEeCC-EEEEEeC------CCeEEEEeccCCCCcceeeEEEecC------c-ceEEEEecCC-cee-Eeccc
Q 041206 164 NAASVNALVVNND-LLFAGSE------GGVISVWKGTFVANPFKQVASIRAP------L-WFCSLSSSND-TRW-NSKEE 227 (371)
Q Consensus 164 ~~~~v~~~~~~~~-~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~~------~-~v~~~~~~~~-~~l-~~~~~ 227 (371)
+-..+..++++++ .|.+... ++.|.+||+.++ +.+..+... . .+..++++++ +.+ ++.
T Consensus 65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg----~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd-- 138 (343)
T 2qe8_A 65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNN----QLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISD-- 138 (343)
T ss_dssp CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTT----EEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEE--
T ss_pred ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCC----eEEEEEECChhhcccccccceEEEecCCCEEEEEc--
Confidence 2236899999987 5555443 578999999887 555555432 1 4688999975 454 444
Q ss_pred ceeeee---CCCeEEEEECCCceEEEEeecCC-----------------------------CcEEEEEEc--CCeEEEEe
Q 041206 228 AAVFEF---CGHTTRTWNLDNLECVQTLKGHS-----------------------------DTVTSLLFW--DEYLFSSS 273 (371)
Q Consensus 228 ~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~-----------------------------~~v~~~~~~--~~~l~s~~ 273 (371)
. .++.|.+||+.+++....+.+|. ..+..++++ ++.|+.+.
T Consensus 139 -----~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~ 213 (343)
T 2qe8_A 139 -----PAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSP 213 (343)
T ss_dssp -----CCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEE
T ss_pred -----CccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEe
Confidence 4 67899999999887766554321 135778888 55777776
Q ss_pred CCC-cEEEEEccCCCC--------------cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecC--CceE
Q 041206 274 LDE-TIKIWLYTHTKN--------------NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFS--RREV 336 (371)
Q Consensus 274 ~dg-~i~iwd~~~~~~--------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~v 336 (371)
.++ .+..++...... .........+...+++.++++...++.|.+||..+++....... ...+
T Consensus 214 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p 293 (343)
T 2qe8_A 214 MHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWT 293 (343)
T ss_dssp SSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCE
T ss_pred CCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecC
Confidence 665 444444221100 00011112233444566888888899999999855553322222 3568
Q ss_pred EEEEeCCCC-eEEeeCCCC
Q 041206 337 EVDQIGPAG-LFFPGDASG 354 (371)
Q Consensus 337 ~~~~~s~~~-~l~~~~~dg 354 (371)
.+++|.+++ ++++.+..+
T Consensus 294 ~~va~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 294 DSFNFGSDGYLYFDCNQLH 312 (343)
T ss_dssp EEEEECTTSCEEEEECCGG
T ss_pred CeeEECCCCcEEEEeCccc
Confidence 999999999 666665433
No 221
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.11 E-value=3.2e-07 Score=79.23 Aligned_cols=213 Identities=9% Similarity=-0.039 Sum_probs=130.6
Q ss_pred CeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC
Q 041206 98 AVTNVGLPSG-SNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND 176 (371)
Q Consensus 98 ~V~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~ 176 (371)
-..+..|+|+ +.++++...++.|..||..+++.. .+... ..+.++.++++
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~----------------------------~~v~~i~~~~d 100 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALP----------------------------FMGSALAKISD 100 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECS----------------------------SCEEEEEEEET
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECC----------------------------CcceEEEEeCC
Confidence 4567889996 455666667889999999877543 22221 24778888877
Q ss_pred -EEEEEeCCCeEEEEeccCCCCcceeeEEEec-C-c-ceEEEEecCCceeEecccceeeeeC-------CCeEEEEECCC
Q 041206 177 -LLFAGSEGGVISVWKGTFVANPFKQVASIRA-P-L-WFCSLSSSNDTRWNSKEEAAVFEFC-------GHTTRTWNLDN 245 (371)
Q Consensus 177 -~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~-~-~v~~~~~~~~~~l~~~~~~~~~~~~-------dg~i~iwd~~~ 245 (371)
.+++++. ..|.+||..++.. ..+..... . . .+..++++|+|+++.+ +. .+.|..++ +
T Consensus 101 g~l~v~~~-~gl~~~d~~~g~~--~~~~~~~~~~~~~~~~~i~~d~~G~l~v~-------~~~~~~~~~~~~l~~~~--~ 168 (326)
T 2ghs_A 101 SKQLIASD-DGLFLRDTATGVL--TLHAELESDLPGNRSNDGRMHPSGALWIG-------TMGRKAETGAGSIYHVA--K 168 (326)
T ss_dssp TEEEEEET-TEEEEEETTTCCE--EEEECSSTTCTTEEEEEEEECTTSCEEEE-------EEETTCCTTCEEEEEEE--T
T ss_pred CeEEEEEC-CCEEEEECCCCcE--EEEeeCCCCCCCCCCCCEEECCCCCEEEE-------eCCCcCCCCceEEEEEe--C
Confidence 5555554 4589999877621 11111111 1 2 6889999999986555 42 35677777 4
Q ss_pred ceEEEEeecCCCcEEEEEEc--CCeE-EEEeCCCcEEEEEcc--CC-CCc--cee-------cceEEEEecCCCCEEEEe
Q 041206 246 LECVQTLKGHSDTVTSLLFW--DEYL-FSSSLDETIKIWLYT--HT-KNN--AEL-------SSLFGMLDAEAKPVLFSS 310 (371)
Q Consensus 246 ~~~~~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i~iwd~~--~~-~~~--~~~-------~~~~~~~~~~~~~~l~~~ 310 (371)
++... +..+......++|+ ++.+ ++.+.++.|.+||+. .. ... ..+ .....+....++.+.++.
T Consensus 169 g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~ 247 (326)
T 2ghs_A 169 GKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNAR 247 (326)
T ss_dssp TEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEE
T ss_pred CcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEE
Confidence 55433 32333456788998 4455 444567899999985 33 110 111 112334444455566665
Q ss_pred cCCCeEEEEEcCCcceeeeec-CCceEEEEEeC-CCC--eEEeeCCC
Q 041206 311 GKDSAIRLYELPSFKLRARIF-SRREVEVDQIG-PAG--LFFPGDAS 353 (371)
Q Consensus 311 ~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s-~~~--~l~~~~~d 353 (371)
..++.|.+||. +++.+..+. ....+++++|+ |++ ++++...+
T Consensus 248 ~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 248 WGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp ETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred eCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 56688999998 556655554 34579999998 887 44444444
No 222
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.10 E-value=8.4e-08 Score=91.34 Aligned_cols=264 Identities=12% Similarity=0.076 Sum_probs=158.8
Q ss_pred CCccceEEEEEeccCCCCccCCceeeEeeeCccCC----------e-EEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE
Q 041206 64 GDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKA----------V-TNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVN 132 (371)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~----------V-~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 132 (371)
+..++.+..++ ..+++.+.+++.+... + ..+++ .+..++.++.|+.|..+|..+|+.+.
T Consensus 76 ~~~~~~v~AlD--------~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W 145 (689)
T 1yiq_A 76 TGPFSVVYALD--------ARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAW 145 (689)
T ss_dssp ECGGGCEEEEE--------TTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EcCCCeEEEEE--------CCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEee
Confidence 34456677777 4566777776543321 1 11222 35688889999999999999999998
Q ss_pred EEeCC-C-----eeE--EEeecCCEEEEec-------CCcEEEEEeCCCCee----------------------------
Q 041206 133 VITNG-A-----EIG--CLISEGSWVFLGL-------PNAVKSWRVNAASVN---------------------------- 169 (371)
Q Consensus 133 ~~~~~-~-----~~~--~~~~~~~~~~~~~-------~~~i~~~~~~~~~v~---------------------------- 169 (371)
.+... . .+. .+.. +..++++. ++.+..||..++...
T Consensus 146 ~~~~~~~~~~~~~~~~sP~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 224 (689)
T 1yiq_A 146 SVDTRADHKRSYTITGAPRVV-NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG 224 (689)
T ss_dssp EEECCSCTTSCCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred eecCcCCCCCCccccCCcEEE-CCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence 87653 1 111 1112 34444432 467888887776321
Q ss_pred --------------EEEEeCC--EEEEEeCCCe-------------------EEEEeccCCCCcceeeEEEecC--c---
Q 041206 170 --------------ALVVNND--LLFAGSEGGV-------------------ISVWKGTFVANPFKQVASIRAP--L--- 209 (371)
Q Consensus 170 --------------~~~~~~~--~l~~~~~dg~-------------------v~iwd~~~~~~~~~~~~~~~~~--~--- 209 (371)
.++++++ .+++++.++. |..+|..++ +.+-.++.. .
T Consensus 225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG----~~~W~~~~~~~d~wd 300 (689)
T 1yiq_A 225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTG----EYVWHYQTTPGDAWD 300 (689)
T ss_dssp STHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTC----CEEEEEESSTTCCSC
T ss_pred ceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCC----ceeEeeecCCccccc
Confidence 3456664 7777877653 999999998 555555431 1
Q ss_pred -----ceEEEEecCCce----eEecccceeeeeCCCeEEEEECCCceEEEEeecCC-Cc---------------------
Q 041206 210 -----WFCSLSSSNDTR----WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHS-DT--------------------- 258 (371)
Q Consensus 210 -----~v~~~~~~~~~~----l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~--------------------- 258 (371)
+........+|+ ++.+ +.+|.++++|.++++.+...+... ..
T Consensus 301 ~~~~~~~~l~d~~~~G~~~~~v~~~-------~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~ 373 (689)
T 1yiq_A 301 YTATQHMILAELPIDGKPRKVLMQA-------PKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYW 373 (689)
T ss_dssp CCCCSCEEEEEEEETTEEEEEEEEC-------CTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTT
T ss_pred ccCCCCcEEEeeccCCcEEEEEEEE-------CCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhcccc
Confidence 111111112342 6667 999999999999999874432111 00
Q ss_pred -----------------EEEEEEc--CCeEEEEeC---------------------------------------------
Q 041206 259 -----------------VTSLLFW--DEYLFSSSL--------------------------------------------- 274 (371)
Q Consensus 259 -----------------v~~~~~~--~~~l~s~~~--------------------------------------------- 274 (371)
-..++|+ ..++++...
T Consensus 374 ~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~ 453 (689)
T 1yiq_A 374 KNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSW 453 (689)
T ss_dssp TSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTC
T ss_pred CCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCc
Confidence 0114555 234444321
Q ss_pred CCcEEEEEccCCCCccee---c-ceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecCCce--EEEEEeCCCC--e
Q 041206 275 DETIKIWLYTHTKNNAEL---S-SLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRRE--VEVDQIGPAG--L 346 (371)
Q Consensus 275 dg~i~iwd~~~~~~~~~~---~-~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--v~~~~~s~~~--~ 346 (371)
+|.|+.||+.+.+..-.. . .........++ +++.++.|+.++.||.++++++.++..... ..-+.|..+| +
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg-lvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGN-LVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ceeEEEEECCCCCeEeEccCCCCccCccceECCC-EEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence 377999998776631111 0 11112333444 888999999999999999999988874322 2336667888 5
Q ss_pred EEee
Q 041206 347 FFPG 350 (371)
Q Consensus 347 l~~~ 350 (371)
+++.
T Consensus 533 v~~~ 536 (689)
T 1yiq_A 533 VTFM 536 (689)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 223
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.06 E-value=7.4e-07 Score=76.18 Aligned_cols=192 Identities=8% Similarity=0.067 Sum_probs=117.3
Q ss_pred ccCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEE-EeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEE
Q 041206 95 HKKAVTNVGLPSG-SNKLYSGSRDGRVSVWDRDSGRCVNV-ITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALV 172 (371)
Q Consensus 95 h~~~V~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~ 172 (371)
+...+.+++++++ ++++++.. .+.|.+||.. ++.... ...... .....+.+++
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~-----------------------~~~~~~~~i~ 123 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEG-----------------------RRMQGCNDCA 123 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTS-----------------------CBCBCCCEEE
T ss_pred CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCC-----------------------ccccCCcCEE
Confidence 5678999999999 76555544 4479999988 765432 221100 0112377888
Q ss_pred EeCC-EEEEEe-CC---------------CeEEEEeccCCCCcceeeEEEecCcceEEEEec----CCce-e-Eecccce
Q 041206 173 VNND-LLFAGS-EG---------------GVISVWKGTFVANPFKQVASIRAPLWFCSLSSS----NDTR-W-NSKEEAA 229 (371)
Q Consensus 173 ~~~~-~l~~~~-~d---------------g~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~-l-~~~~~~~ 229 (371)
++++ .+..++ .+ +.|..||.. + +.............++++ ++++ + ++.
T Consensus 124 ~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g----~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~---- 194 (314)
T 1pjx_A 124 FDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G----QMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAE---- 194 (314)
T ss_dssp ECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S----CEEEEEEEESSEEEEEEEECTTSCEEEEEEEE----
T ss_pred ECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C----CEEEeccCCCCcceEEEecccCCCCCEEEEEE----
Confidence 8877 333333 33 567777765 3 222222222256788999 9985 4 444
Q ss_pred eeeeCCCeEEEEECC-Cce-----EEEEeecCC-CcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCCccee----cceE
Q 041206 230 VFEFCGHTTRTWNLD-NLE-----CVQTLKGHS-DTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKNNAEL----SSLF 296 (371)
Q Consensus 230 ~~~~~dg~i~iwd~~-~~~-----~~~~~~~~~-~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~ 296 (371)
..++.|.+||+. +++ ....+..+. .....++++ ++++++...++.|.+||....+....+ ..+.
T Consensus 195 ---~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~ 271 (314)
T 1pjx_A 195 ---TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPS 271 (314)
T ss_dssp ---TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEE
T ss_pred ---CCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCce
Confidence 467899999986 443 223334443 567888888 566666667889999998744321111 2344
Q ss_pred EEEecCCCC-EEEEecCCCeEEEEEcCC
Q 041206 297 GMLDAEAKP-VLFSSGKDSAIRLYELPS 323 (371)
Q Consensus 297 ~~~~~~~~~-~l~~~~~d~~i~iwd~~~ 323 (371)
.+...+++. ++++...++.|..|++..
T Consensus 272 ~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 272 NLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred eEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 444455555 455556678999999875
No 224
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.06 E-value=2.7e-11 Score=106.72 Aligned_cols=183 Identities=13% Similarity=0.041 Sum_probs=105.8
Q ss_pred EeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEE
Q 041206 173 VNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQT 251 (371)
Q Consensus 173 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~ 251 (371)
...+.+++++.||.|+.||..++ +.+-.+.. ..+.+..+..++. ++++ +.|+.|+.||.++++.+..
T Consensus 7 v~~~~v~~gs~dg~v~a~d~~tG----~~~W~~~~-~~~~s~p~~~~g~~~v~~-------s~dg~l~a~d~~tG~~~w~ 74 (369)
T 2hz6_A 7 LPETLLFVSTLDGSLHAVSKRTG----SIKWTLKE-DPVLQVPTHVEEPAFLPD-------PNDGSLYTLGSKNNEGLTK 74 (369)
T ss_dssp -CTTEEEEEETTSEEEEEETTTC----CEEEEEEC-CCSCCCC-----CCEEEC-------TTTCCEEEC-----CCSEE
T ss_pred eeCCEEEEEcCCCEEEEEECCCC----CEEEEecC-CCceecceEcCCCEEEEe-------CCCCEEEEEECCCCceeee
Confidence 34558999999999999999998 55555554 4333334445564 6667 8999999999999888766
Q ss_pred eecCCCc-EE-EEEE-cCCeEEEEeCCCcEEEEEccCCCCcceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceee
Q 041206 252 LKGHSDT-VT-SLLF-WDEYLFSSSLDETIKIWLYTHTKNNAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRA 328 (371)
Q Consensus 252 ~~~~~~~-v~-~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 328 (371)
+..+... +. +..+ .+..+++++.|+.++.||.++++..-....-......+.+..+++++.++.|+.||.++++.+.
T Consensus 75 ~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 75 LPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFADSLSPSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp CSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC----------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred eeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCcccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 6543211 10 1112 3567788889999999998876643222110011112244478888999999999999998877
Q ss_pred eecCCceEEEEEeCCC----CeEEeeCCCCcEEEEEccccceec
Q 041206 329 RIFSRREVEVDQIGPA----GLFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 329 ~~~~~~~v~~~~~s~~----~~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
.+... ......+.++ +.+++++.||.|+.||..+++..+
T Consensus 155 ~~~~~-~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W 197 (369)
T 2hz6_A 155 NATYF-DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLW 197 (369)
T ss_dssp EEEEE-EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEE
T ss_pred eEecc-cccCccccCCccccceEEEECCCCEEEEEECCCCcEEE
Confidence 65421 1223344442 467778889999999998887654
No 225
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.02 E-value=5.1e-07 Score=74.56 Aligned_cols=185 Identities=11% Similarity=-0.025 Sum_probs=131.4
Q ss_pred eeEEEEeCC-EEEEEeC---CCeEEEEeccCCCCcceeeEEEecCc--ceEEEEecCCce-eEecccceeeeeCCCeEEE
Q 041206 168 VNALVVNND-LLFAGSE---GGVISVWKGTFVANPFKQVASIRAPL--WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRT 240 (371)
Q Consensus 168 v~~~~~~~~-~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~i 240 (371)
...+.++++ .|+.++. ++.|.++|+.++ +.+..+.... ....+++.. ++ +++. -.++.+.+
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg----~v~~~i~l~~~~fgeGi~~~g-~~lyv~t-------~~~~~v~v 90 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTG----KVENIHKMDDSYFGEGLTLLN-EKLYQVV-------WLKNIGFI 90 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTC----CEEEEEECCTTCCEEEEEEET-TEEEEEE-------TTCSEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCC----CEEEEEecCCCcceEEEEEeC-CEEEEEE-------ecCCEEEE
Confidence 578899985 5555542 589999999998 6776665333 334566664 34 4455 67899999
Q ss_pred EECCCceEEEEeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCCccee---------cceEEEEecCCCCEEEEec
Q 041206 241 WNLDNLECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKNNAEL---------SSLFGMLDAEAKPVLFSSG 311 (371)
Q Consensus 241 wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~ 311 (371)
+|..+++.+.++......-..++..++.++.+..++.|.++|..+.+....+ ..+..+.+. ++.+.+...
T Consensus 91 iD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~ 169 (266)
T 2iwa_A 91 YDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIW 169 (266)
T ss_dssp EETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred EECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecC
Confidence 9999999998886431233557777777776667889999998776542222 123333344 343555555
Q ss_pred CCCeEEEEEcCCcceeeeecCC--------------ceEEEEEeCCCC--eEEeeCCCCcEEEEEccccc
Q 041206 312 KDSAIRLYELPSFKLRARIFSR--------------REVEVDQIGPAG--LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 312 ~d~~i~iwd~~~~~~~~~~~~~--------------~~v~~~~~s~~~--~l~~~~~dg~i~iw~~~~~~ 365 (371)
.++.|.+.|+.+++.+..+... ...+.++|+|++ +++++...+.+.+.++...+
T Consensus 170 ~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 170 QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 6789999999999988877531 356999999998 88888889999999987643
No 226
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.96 E-value=1e-05 Score=78.70 Aligned_cols=258 Identities=9% Similarity=0.076 Sum_probs=162.4
Q ss_pred ccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC--------CCeeEEEeec-CCEEEEecCCcEEEEEeCC
Q 041206 95 HKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN--------GAEIGCLISE-GSWVFLGLPNAVKSWRVNA 165 (371)
Q Consensus 95 h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~ 165 (371)
+...|.++...+++.+.+ |+.++-+.+||..+++....... ...+.++..+ ...+..+.++.+.+|+..+
T Consensus 213 ~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~ 291 (795)
T 4a2l_A 213 GTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGT 291 (795)
T ss_dssp -CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESSCEEEEETTT
T ss_pred CCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCChhheEcCCC
Confidence 346788998888776555 44443499999887765433221 2447777654 3344444444677777543
Q ss_pred C------------------CeeEEEEeCC-EEEEEeCCCeEEEEeccCCCCcceeeEEEe---c-Cc-ceEEEEecCCce
Q 041206 166 A------------------SVNALVVNND-LLFAGSEGGVISVWKGTFVANPFKQVASIR---A-PL-WFCSLSSSNDTR 221 (371)
Q Consensus 166 ~------------------~v~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---~-~~-~v~~~~~~~~~~ 221 (371)
. .|.++..+++ .+.+|+.++.|..|+.....- ....... . .. .|.++...+++.
T Consensus 292 ~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~--~~~~~~~~~~~l~~~~V~~i~~d~~g~ 369 (795)
T 4a2l_A 292 DSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRF--KNIRNIPYKNSLSDNVVSCIVEDKDKN 369 (795)
T ss_dssp TEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSS--EEECCCTTSSSCSCSSEEEEEECTTSC
T ss_pred CeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccc--eEEcCCCCCCCCCCCeeEEEEECCCCC
Confidence 2 5788888877 888899888999998766421 1111100 1 12 799999999999
Q ss_pred eEecccceeeeeCCCeEEEEECCCceEEEEeec--------CCCcEEEEEEc-CCe-EEEEeCCCcEEEEEccCCCCc--
Q 041206 222 WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKG--------HSDTVTSLLFW-DEY-LFSSSLDETIKIWLYTHTKNN-- 289 (371)
Q Consensus 222 l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~~~~~-~~~-l~s~~~dg~i~iwd~~~~~~~-- 289 (371)
+..| +.++-|..||..+++....... ....|.++... ... |..|+.++-|..||....+..
T Consensus 370 lWiG-------t~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~ 442 (795)
T 4a2l_A 370 LWIG-------TNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENF 442 (795)
T ss_dssp EEEE-------ESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred EEEE-------ECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEe
Confidence 8888 8888899999987654332211 23578898886 444 888888777999986653311
Q ss_pred ------ceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-------CCceEEEEEeCCCCeEEeeCCCCcE
Q 041206 290 ------AELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-------SRREVEVDQIGPAGLFFPGDASGSV 356 (371)
Q Consensus 290 ------~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~v~~~~~s~~~~l~~~~~dg~i 356 (371)
.....+..+.....+. |..|+. +-+.+||..+++...... ....|.++...++|.|..|+. +-|
T Consensus 443 ~~~~~~l~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl 519 (795)
T 4a2l_A 443 NQRNSQLVNENVYAILPDGEGN-LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGL 519 (795)
T ss_dssp CTTTSCCSCSCEEEEEECSSSC-EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCE
T ss_pred ecCCCCcCCCeeEEEEECCCCC-EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-Cce
Confidence 1112344444444453 444555 458889988765432211 236789999999983333444 457
Q ss_pred EEEEccccc
Q 041206 357 GVWKWLLAE 365 (371)
Q Consensus 357 ~iw~~~~~~ 365 (371)
..|+..+.+
T Consensus 520 ~~~~~~~~~ 528 (795)
T 4a2l_A 520 SVFKQEGLD 528 (795)
T ss_dssp EEEEEETTE
T ss_pred EEEeCCCCe
Confidence 788876544
No 227
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.96 E-value=7.6e-06 Score=69.16 Aligned_cols=175 Identities=10% Similarity=0.040 Sum_probs=113.6
Q ss_pred CccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC---CCeeEEEee--cCCEEEEec-CCcEEEEEeC---
Q 041206 94 GHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN---GAEIGCLIS--EGSWVFLGL-PNAVKSWRVN--- 164 (371)
Q Consensus 94 ~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~-~~~i~~~~~~--- 164 (371)
.+...+.++++.+++++.++...++.|..+|.. ++.. .+.. ...+..+.. ++.+.++.. ++.+..++..
T Consensus 59 ~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~ 136 (300)
T 2qc5_A 59 TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTI 136 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCE
T ss_pred CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCE
Confidence 345679999999999888877778889999987 6553 3322 233445543 455555543 5566666544
Q ss_pred --------CCCeeEEEEeCC-EEE-EEeCCCeEEEEeccCCCCcceeeE-EEecCc-ceEEEEecCCceeEecccceeee
Q 041206 165 --------AASVNALVVNND-LLF-AGSEGGVISVWKGTFVANPFKQVA-SIRAPL-WFCSLSSSNDTRWNSKEEAAVFE 232 (371)
Q Consensus 165 --------~~~v~~~~~~~~-~l~-~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~ 232 (371)
...+.+++++++ .+. +...++.|..+|. ++ +... ...... .+..+++.+++.++.+
T Consensus 137 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g----~~~~~~~~~~~~~~~~i~~d~~g~l~v~------- 204 (300)
T 2qc5_A 137 YEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TG----KLEEYPLPTNAAAPVGITSGNDGALWFV------- 204 (300)
T ss_dssp EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC----CEEEEECSSTTCCEEEEEECTTSSEEEE-------
T ss_pred EEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CC----cEEEeeCCCCCCCcceEEECCCCCEEEE-------
Confidence 124677788776 344 4444788999998 43 2222 122233 7889999999885554
Q ss_pred e-CCCeEEEEECCCceEEE-EeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEc
Q 041206 233 F-CGHTTRTWNLDNLECVQ-TLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLY 283 (371)
Q Consensus 233 ~-~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~ 283 (371)
. ..+.|.+||. +++... .+..+...+.+++++ +++.++...++.|..||.
T Consensus 205 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 205 EIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred ccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 4 4678999998 444433 233345678899988 455555556688999986
No 228
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.96 E-value=1.9e-06 Score=76.75 Aligned_cols=175 Identities=10% Similarity=0.046 Sum_probs=108.9
Q ss_pred ccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceEEEEeC-CCeeEE
Q 041206 66 KCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDG--RVSVWDRDSGRCVNVITN-GAEIGC 142 (371)
Q Consensus 66 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~-~~~~~~ 142 (371)
....|+.|+ ..+.+....... ..... ++|+|+++.|+.+..++ .|.+|+...+.....+.. ...
T Consensus 150 ~~~~I~~id--------~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~--- 216 (409)
T 3hrp_A 150 DDPRVRLIS--------VDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGST--- 216 (409)
T ss_dssp TTTEEEEEE--------TTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTT---
T ss_pred CCCcEEEEE--------CCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccch---
Confidence 345677776 233344333333 23334 99999999999988766 788888876654433310 000
Q ss_pred EeecCCEEEEecCCcEEEEEeCCCCeeEEEEeC-C-EEEEEeCCCeEEEEeccCCCCcceeeEE--EecCc-c--eEEEE
Q 041206 143 LISEGSWVFLGLPNAVKSWRVNAASVNALVVNN-D-LLFAGSEGGVISVWKGTFVANPFKQVAS--IRAPL-W--FCSLS 215 (371)
Q Consensus 143 ~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~-~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~~~-~--v~~~~ 215 (371)
....+.+++++| + .|+++..++.|+.||..+... ..+.. ..+.. . ...++
T Consensus 217 ---------------------~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~--~~~~~~~~~g~~~~~P~~~ia 273 (409)
T 3hrp_A 217 ---------------------FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV--TLIKQLELSGSLGTNPGPYLI 273 (409)
T ss_dssp ---------------------SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE--EEEEECCCCSCCCCSSCCEEE
T ss_pred ---------------------hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE--EEEecccccCCCCCCccccEE
Confidence 112467888988 4 666677788999999987621 11111 11222 1 23999
Q ss_pred ecCC-ce-eEecccceeeeeCCCeEEEEECCCceEEEEeecCC---------------CcEEEEEEc--CCeEEEEe-CC
Q 041206 216 SSND-TR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHS---------------DTVTSLLFW--DEYLFSSS-LD 275 (371)
Q Consensus 216 ~~~~-~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~---------------~~v~~~~~~--~~~l~s~~-~d 275 (371)
++|+ +. +++- ...+.|+.|+.... +..+.++. .....++++ ++++++-+ .+
T Consensus 274 ~~p~~g~lyv~d-------~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~ 344 (409)
T 3hrp_A 274 YYFVDSNFYMSD-------QNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKG 344 (409)
T ss_dssp EETTTTEEEEEE-------TTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTT
T ss_pred EeCCCCEEEEEe-------CCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCC
Confidence 9994 66 4555 66789999998743 33333332 347789998 56667777 78
Q ss_pred CcEEEEEccC
Q 041206 276 ETIKIWLYTH 285 (371)
Q Consensus 276 g~i~iwd~~~ 285 (371)
+.|+.|++..
T Consensus 345 ~~I~~~~~~~ 354 (409)
T 3hrp_A 345 YCLRKLDILD 354 (409)
T ss_dssp CEEEEEETTT
T ss_pred CEEEEEECCC
Confidence 8999999543
No 229
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.95 E-value=4.7e-06 Score=70.79 Aligned_cols=182 Identities=11% Similarity=0.051 Sum_probs=116.9
Q ss_pred CccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCC-----Ce
Q 041206 65 DKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNG-----AE 139 (371)
Q Consensus 65 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-----~~ 139 (371)
...+.|..|+ ..+.+ ...+. +...+.+++++|+++++++ . ++.|.+||.++++........ ..
T Consensus 32 ~~~~~i~~~d--------~~~~~-~~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~ 99 (297)
T 3g4e_A 32 IPAKKVCRWD--------SFTKQ-VQRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNR 99 (297)
T ss_dssp TTTTEEEEEE--------TTTCC-EEEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEE
T ss_pred CCCCEEEEEE--------CCCCc-EEEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCC
Confidence 3455677777 22222 22332 4567999999999995555 4 567999999888765443321 22
Q ss_pred eEEEe--ecCCEEEEec----------CCcEEEEEeCCC-----------CeeEEEEeCC--EE-EEEeCCCeEEEEecc
Q 041206 140 IGCLI--SEGSWVFLGL----------PNAVKSWRVNAA-----------SVNALVVNND--LL-FAGSEGGVISVWKGT 193 (371)
Q Consensus 140 ~~~~~--~~~~~~~~~~----------~~~i~~~~~~~~-----------~v~~~~~~~~--~l-~~~~~dg~v~iwd~~ 193 (371)
+..+. +++.++++.. .....+|.+... ..+.++|+|+ .+ ++.+.++.|.+|++.
T Consensus 100 ~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d 179 (297)
T 3g4e_A 100 FNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYD 179 (297)
T ss_dssp EEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEEC
T ss_pred CCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEecc
Confidence 34443 3566655532 123455555432 3567889887 44 555667899999974
Q ss_pred --CCCCc-ceeeEEEecCc-ceEEEEecCCceeE-ecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc
Q 041206 194 --FVANP-FKQVASIRAPL-WFCSLSSSNDTRWN-SKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW 265 (371)
Q Consensus 194 --~~~~~-~~~~~~~~~~~-~v~~~~~~~~~~l~-~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 265 (371)
++... .+.+..+.... ....+++.++|.+. +. ..++.|..||..+++.+..+..+...+++++|.
T Consensus 180 ~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~-------~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 180 LQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVAC-------YNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFG 249 (297)
T ss_dssp TTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEE-------ETTTEEEEECTTTCCEEEEEECSSSBEEEEEEE
T ss_pred CCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEE-------cCCCEEEEEcCCCceEEEEEECCCCCceEEEEe
Confidence 33100 01222333333 67889999999854 44 557889999999999999988887889999997
No 230
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.93 E-value=2e-07 Score=88.52 Aligned_cols=249 Identities=11% Similarity=0.033 Sum_probs=156.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeCCCee------------EEEe-ecCCEEEEecCCcEEEEEeCCCCee-EEEE
Q 041206 108 SNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEI------------GCLI-SEGSWVFLGLPNAVKSWRVNAASVN-ALVV 173 (371)
Q Consensus 108 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~------------~~~~-~~~~~~~~~~~~~i~~~~~~~~~v~-~~~~ 173 (371)
+..|+.++.++.|.-+|..+|+.+.++...... .... .++..++...++.+..+|..++.+. ....
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 145 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQT 145 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence 557778888899999999999999888654321 1112 2344444456889999998877432 2221
Q ss_pred ---------------eCCEEEEEeC------CCeEEEEeccCCCCcceeeEEEecC------------------------
Q 041206 174 ---------------NNDLLFAGSE------GGVISVWKGTFVANPFKQVASIRAP------------------------ 208 (371)
Q Consensus 174 ---------------~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~~------------------------ 208 (371)
..+.++++.. +|.|..+|..++ +.+-.+...
T Consensus 146 ~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG----~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 146 TDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTG----KLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp SCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTC----CEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred CCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCC----cEEEEecccCCCCCccccccccccccccCCccc
Confidence 1235666643 589999999998 444444321
Q ss_pred -------c-ceEEEEecCCc-eeEecccceeeeeCCC-------------------eEEEEECCCceEEEEeec--CC--
Q 041206 209 -------L-WFCSLSSSNDT-RWNSKEEAAVFEFCGH-------------------TTRTWNLDNLECVQTLKG--HS-- 256 (371)
Q Consensus 209 -------~-~v~~~~~~~~~-~l~~~~~~~~~~~~dg-------------------~i~iwd~~~~~~~~~~~~--~~-- 256 (371)
. ....+++.++. .++.+ +.++ .|..+|.++++.+..++. |.
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~-------~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~w 294 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVG-------TGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSW 294 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEE-------CCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS
T ss_pred eeeeCCCCccccceEEcCCCCEEEEe-------CCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccc
Confidence 0 11235666654 45555 5444 499999999999877764 22
Q ss_pred -----CcE--EEEEEcCC---eEEEEeCCCcEEEEEccCCCCcce-----------ec-----ce---------------
Q 041206 257 -----DTV--TSLLFWDE---YLFSSSLDETIKIWLYTHTKNNAE-----------LS-----SL--------------- 295 (371)
Q Consensus 257 -----~~v--~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~-----------~~-----~~--------------- 295 (371)
.+. ..+.+.++ .++.++.+|.++++|..+.+.... +. .+
T Consensus 295 d~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~ 374 (668)
T 1kv9_A 295 DFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMW 374 (668)
T ss_dssp CCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEES
T ss_pred cccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEEC
Confidence 222 22334443 688999999999999766553200 00 00
Q ss_pred ----------EEEEecCCCCEEEE------------------------------------ecCCCeEEEEEcCCcceeee
Q 041206 296 ----------FGMLDAEAKPVLFS------------------------------------SGKDSAIRLYELPSFKLRAR 329 (371)
Q Consensus 296 ----------~~~~~~~~~~~l~~------------------------------------~~~d~~i~iwd~~~~~~~~~ 329 (371)
...+.+..+ +++. ...+|.|.-||+.+++.+.+
T Consensus 375 p~~~G~~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~ 453 (668)
T 1kv9_A 375 PSPFGAHNWHSMSFNPGTG-LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWK 453 (668)
T ss_dssp SCTTCSSCSSCCEEETTTT-EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEE
T ss_pred CCCccccCCCcceECCCCC-EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEE
Confidence 011222223 3332 11348899999999999888
Q ss_pred ecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEccccceec
Q 041206 330 IFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 330 ~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
.....+.....+...+ +++.++.||.++.||..+++...
T Consensus 454 ~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~ 493 (668)
T 1kv9_A 454 VPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW 493 (668)
T ss_dssp EEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhhe
Confidence 7654444333333345 88888999999999999887654
No 231
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.93 E-value=7.5e-07 Score=79.06 Aligned_cols=245 Identities=9% Similarity=-0.037 Sum_probs=140.7
Q ss_pred cccceeEEEEEeeccceeeeeeeecceeecccee------eCCccceEEEEEeccCCCCccCCceeeEeeeCc-------
Q 041206 29 LMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCV------YGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGH------- 95 (371)
Q Consensus 29 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h------- 95 (371)
..+++.+..+.--... .++++|.+.++..... .+.....+.+++ ..+.+.+.++.--
T Consensus 106 ~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD--------~~t~~vv~~I~v~g~~r~~~ 175 (426)
T 3c75_H 106 GSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFD--------PVTFLPIADIELPDAPRFLV 175 (426)
T ss_dssp TTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC--------TTTCCEEEEEEETTCCCCCB
T ss_pred CCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEE--------CCCCcEEEEEECCCcccccc
Confidence 4456777666543333 6778887664332221 122355777777 4556677666421
Q ss_pred cCCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceEEEEeCCCeeEEEeec--CCEEEEecCCcEEEEEeCCCCeeE-
Q 041206 96 KKAVTNVGLPSGSNKLYSGSR--DGRVSVWDRDSGRCVNVITNGAEIGCLISE--GSWVFLGLPNAVKSWRVNAASVNA- 170 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~v~~- 170 (371)
......++|+||+++|+.+.. ++.|.+.|+.+++.+.++..... ..+.+. ..++..+.++.+.+.+..++.+..
T Consensus 176 g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~ 254 (426)
T 3c75_H 176 GTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-YHIFPASPTVFYMNCRDGSLARVDFADGETKVT 254 (426)
T ss_dssp SCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred CCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence 134567899999999999874 57899999999999999887543 222232 223334556666666664444432
Q ss_pred ---------------EEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecC----------c-ceEEEEecCCce-
Q 041206 171 ---------------LVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAP----------L-WFCSLSSSNDTR- 221 (371)
Q Consensus 171 ---------------~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~----------~-~v~~~~~~~~~~- 221 (371)
+.+.++ .++..+..+.|.+.|+..... .....+... . ....++++|++.
T Consensus 255 ~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~--~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~r 332 (426)
T 3c75_H 255 NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA--TFRAPIEALTEAERADDWRPGGWQQTAYHRQSDR 332 (426)
T ss_dssp ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE--EECCCEESSCTTTGGGTEEECSSSCEEEEGGGTE
T ss_pred eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce--EEeeeeeeccccccccccccCCceeeEEcCCCCE
Confidence 234544 555556788999999875421 111111100 0 122368888874
Q ss_pred eEecccceeeee---CCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CC-eEEEEe-CCCcEEEEEccCCC
Q 041206 222 WNSKEEAAVFEF---CGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DE-YLFSSS-LDETIKIWLYTHTK 287 (371)
Q Consensus 222 l~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~-~dg~i~iwd~~~~~ 287 (371)
+++....-.-++ .++.|.++|+.+++.+.++.... ....+.|+ ++ ++++.. .++.|.++|..+.+
T Consensus 333 lyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 333 IYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 544400000000 13579999999999988876322 34555555 33 444444 35555555554443
No 232
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.90 E-value=2.4e-06 Score=70.58 Aligned_cols=200 Identities=9% Similarity=0.015 Sum_probs=134.2
Q ss_pred CceeeEeeeCccC--CeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEE
Q 041206 85 SLATLMKLNGHKK--AVTNVGLPSGSNKLYSGSR--DGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKS 160 (371)
Q Consensus 85 ~~~~~~~l~~h~~--~V~~~~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (371)
..+.+.++. |.. ....++|+|++.+.++.+. ++.|++.|..+++.+..+......
T Consensus 8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~-------------------- 66 (266)
T 2iwa_A 8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY-------------------- 66 (266)
T ss_dssp EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC--------------------
T ss_pred CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc--------------------
Confidence 356677774 553 3689999998755555443 579999999999999887643210
Q ss_pred EEeCCCCeeEEEEeCCEEEEE-eCCCeEEEEeccCCCCcceeeEEEecC-cceEEEEecCCce-eEecccceeeeeCCCe
Q 041206 161 WRVNAASVNALVVNNDLLFAG-SEGGVISVWKGTFVANPFKQVASIRAP-LWFCSLSSSNDTR-WNSKEEAAVFEFCGHT 237 (371)
Q Consensus 161 ~~~~~~~v~~~~~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~-l~~~~~~~~~~~~dg~ 237 (371)
....+++.++.++.+ -.++.+.++|..+. +.+..+... ..- ..+++|++ ++++ ..++.
T Consensus 67 ------fgeGi~~~g~~lyv~t~~~~~v~viD~~t~----~v~~~i~~g~~~g--~glt~Dg~~l~vs-------~gs~~ 127 (266)
T 2iwa_A 67 ------FGEGLTLLNEKLYQVVWLKNIGFIYDRRTL----SNIKNFTHQMKDG--WGLATDGKILYGS-------DGTSI 127 (266)
T ss_dssp ------CEEEEEEETTEEEEEETTCSEEEEEETTTT----EEEEEEECCSSSC--CEEEECSSSEEEE-------CSSSE
T ss_pred ------ceEEEEEeCCEEEEEEecCCEEEEEECCCC----cEEEEEECCCCCe--EEEEECCCEEEEE-------CCCCe
Confidence 133566667644444 45789999999988 777777644 311 22444664 6666 66889
Q ss_pred EEEEECCCceEEEEeecCC-----CcEEEEEEcCCeEEE-EeCCCcEEEEEccCCCCccee-----------------cc
Q 041206 238 TRTWNLDNLECVQTLKGHS-----DTVTSLLFWDEYLFS-SSLDETIKIWLYTHTKNNAEL-----------------SS 294 (371)
Q Consensus 238 i~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~-----------------~~ 294 (371)
|.++|..+.+.+..+.-.. ..++.+.|.+..++. ...++.|.+.|..+.+....+ ..
T Consensus 128 l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v 207 (266)
T 2iwa_A 128 LYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDV 207 (266)
T ss_dssp EEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCC
T ss_pred EEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCc
Confidence 9999999998887776321 135677777444544 446789999998776642222 12
Q ss_pred eEEE-EecCCCCEEEEecCCCeEEEEEcCCc
Q 041206 295 LFGM-LDAEAKPVLFSSGKDSAIRLYELPSF 324 (371)
Q Consensus 295 ~~~~-~~~~~~~~l~~~~~d~~i~iwd~~~~ 324 (371)
...+ +.++++++++++...+.|.+.++...
T Consensus 208 ~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 208 LNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred eEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 2444 44555667788888899999988664
No 233
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.90 E-value=9.8e-07 Score=72.05 Aligned_cols=169 Identities=11% Similarity=0.058 Sum_probs=119.0
Q ss_pred eeEEEEeCC-EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc--ceEEEEecCCceeEecccceeeeeCCCeEEEEECC
Q 041206 168 VNALVVNND-LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL--WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLD 244 (371)
Q Consensus 168 v~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~ 244 (371)
...+.++.+ ++.+.+.+|.|+++|+.++ +.+..+ ... --..+++..+..+... -.++.+.+||..
T Consensus 57 tqGL~~~~~~Ly~stG~~g~v~~iD~~Tg----kv~~~~-l~~~~FgeGit~~g~~Ly~lt-------w~~~~v~V~D~~ 124 (268)
T 3nok_A 57 TQGLVFHQGHFFESTGHQGTLRQLSLESA----QPVWME-RLGNIFAEGLASDGERLYQLT-------WTEGLLFTWSGM 124 (268)
T ss_dssp EEEEEEETTEEEEEETTTTEEEECCSSCS----SCSEEE-ECTTCCEEEEEECSSCEEEEE-------SSSCEEEEEETT
T ss_pred cceEEEECCEEEEEcCCCCEEEEEECCCC----cEEeEE-CCCCcceeEEEEeCCEEEEEE-------ccCCEEEEEECC
Confidence 467888877 6667777889999999998 555555 222 2344666554334445 678999999999
Q ss_pred CceEEEEeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCCccee---------cceEEEEecCCCCEEEEecCCCe
Q 041206 245 NLECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKNNAEL---------SSLFGMLDAEAKPVLFSSGKDSA 315 (371)
Q Consensus 245 ~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~d~~ 315 (371)
+.+.+.++... ..-..+++.++.|+.+..++.|.++|..+.+....+ ..+..+.+.++ .+.+..-.++.
T Consensus 125 Tl~~~~ti~~~-~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG-~lyanvw~s~~ 202 (268)
T 3nok_A 125 PPQRERTTRYS-GEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANG-VIYANIWHSSD 202 (268)
T ss_dssp TTEEEEEEECS-SCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETT-EEEEEETTCSE
T ss_pred cCcEEEEEeCC-CceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCC-EEEEEECCCCe
Confidence 99999998853 333677777887777777899999997776542222 22333334444 35555556889
Q ss_pred EEEEEcCCcceeeeecC--------------CceEEEEEeCCCC--eEEee
Q 041206 316 IRLYELPSFKLRARIFS--------------RREVEVDQIGPAG--LFFPG 350 (371)
Q Consensus 316 i~iwd~~~~~~~~~~~~--------------~~~v~~~~~s~~~--~l~~~ 350 (371)
|.+.|..+++.+..+.. ....+.|+++|++ +++||
T Consensus 203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 99999999998776652 1367999999987 66666
No 234
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.87 E-value=3.5e-05 Score=74.86 Aligned_cols=251 Identities=8% Similarity=0.102 Sum_probs=160.0
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC--------CCeeEEEeec--CCEEEEecCCcEEEEEeCC
Q 041206 96 KKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN--------GAEIGCLISE--GSWVFLGLPNAVKSWRVNA 165 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--------~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~ 165 (371)
...|.++...+++.+.+ |+.+| |.+||..+++....... ...+.++..+ +.+.+...++.+..++..+
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~ 339 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIR 339 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGG
T ss_pred CCeEEEEEEcCCCCEEE-EeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCc
Confidence 35799999998886554 44454 99999887765443221 2346677653 4444545556677665432
Q ss_pred -----------------CCeeEEEEeCC-EEEEEeCCCeEEEEeccCCCCcceeeEEEe---------cCc-ceEEEEec
Q 041206 166 -----------------ASVNALVVNND-LLFAGSEGGVISVWKGTFVANPFKQVASIR---------APL-WFCSLSSS 217 (371)
Q Consensus 166 -----------------~~v~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---------~~~-~v~~~~~~ 217 (371)
..|.++..+++ .|.+|+.++.|..|+..++ + ...+. ... .|.++...
T Consensus 340 ~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~----~-~~~~~~~~~~~~~~l~~~~v~~i~~d 414 (795)
T 4a2l_A 340 NRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQ----R-FTSYTLQEDESARGIGSNNIKAVYVD 414 (795)
T ss_dssp GSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTC----C-EEEECCC------CCSCSCEEEEEEE
T ss_pred ccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCC----c-EEEEecCCCCcccCCCCccEEEEEEc
Confidence 25888888877 8888999888999998765 2 11221 123 78999999
Q ss_pred CCce-eEecccceeeeeCCCeEEEEECCCceEEEEee----cCCCcEEEEEEc-CCeEEEEeCCCcEEEEEccCCCCc--
Q 041206 218 NDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLK----GHSDTVTSLLFW-DEYLFSSSLDETIKIWLYTHTKNN-- 289 (371)
Q Consensus 218 ~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~-- 289 (371)
+++. +..| +.++-|..+|.++++...... .+...|.++... ...|..|+.+ -+.+||....+-.
T Consensus 415 ~~g~~lWig-------t~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~-Gl~~~~~~~~~~~~~ 486 (795)
T 4a2l_A 415 EKKSLVYIG-------THAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLS-ALVRFNPEQRSFTTI 486 (795)
T ss_dssp TTTTEEEEE-------ETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESS-CEEEEETTTTEEEEC
T ss_pred CCCCEEEEE-------eCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecC-ceeEEeCCCCeEEEc
Confidence 9898 8999 888889999998876543221 234578888887 4556666664 4888886543210
Q ss_pred -------c-eecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec--------CCceEEEEEeCCCCeEEeeCCC
Q 041206 290 -------A-ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF--------SRREVEVDQIGPAGLFFPGDAS 353 (371)
Q Consensus 290 -------~-~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------~~~~v~~~~~s~~~~l~~~~~d 353 (371)
. ....+..+.....+ .+..|+. +-+..||..+.+. .+. ....|.++...++|.|..|+..
T Consensus 487 ~~~~~~~~~~~~~i~~i~~d~~g-~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~ 562 (795)
T 4a2l_A 487 EKEKDGTPVVSKQITTLFRDSHK-RLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE 562 (795)
T ss_dssp CBCTTCCBCCCCCEEEEEECTTC-CEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS
T ss_pred cccccccccCCceEEEEEECCCC-CEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC
Confidence 0 11234444444445 3444545 4588899877654 221 2457999999999833334334
Q ss_pred CcEEEEEccccce
Q 041206 354 GSVGVWKWLLAEQ 366 (371)
Q Consensus 354 g~i~iw~~~~~~~ 366 (371)
-|..|+..+.+.
T Consensus 563 -Gl~~~d~~~~~~ 574 (795)
T 4a2l_A 563 -GFYCFNEKDKQI 574 (795)
T ss_dssp -CEEEEETTTTEE
T ss_pred -CceeECCCCCcE
Confidence 577788765543
No 235
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.82 E-value=6.2e-06 Score=66.72 Aligned_cols=172 Identities=14% Similarity=0.021 Sum_probs=117.6
Q ss_pred CeeEEEEeCC-EEEEEeCC--CeEEEEeccCCCCcceeeEEEecCc--ceEEEEecCCceeEecccceeeeeCCCeEEEE
Q 041206 167 SVNALVVNND-LLFAGSEG--GVISVWKGTFVANPFKQVASIRAPL--WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTW 241 (371)
Q Consensus 167 ~v~~~~~~~~-~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iw 241 (371)
-...+.|+++ ++.+.+.+ ..|+.+|+.++ +.+....... --..+++..+..+... -.++.+.+|
T Consensus 22 ftqGL~~~~~~LyestG~~g~S~v~~vD~~tg----kv~~~~~l~~~~fgeGi~~~~~~ly~lt-------w~~~~v~v~ 90 (243)
T 3mbr_X 22 FTEGLFYLRGHLYESTGETGRSSVRKVDLETG----RILQRAEVPPPYFGAGIVAWRDRLIQLT-------WRNHEGFVY 90 (243)
T ss_dssp CEEEEEEETTEEEEEECCTTSCEEEEEETTTC----CEEEEEECCTTCCEEEEEEETTEEEEEE-------SSSSEEEEE
T ss_pred ccccEEEECCEEEEECCCCCCceEEEEECCCC----CEEEEEeCCCCcceeEEEEeCCEEEEEE-------eeCCEEEEE
Confidence 3668889888 44444444 48999999998 7777766554 2234555543224445 678999999
Q ss_pred ECCCceEEEEeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCCccee---------cceEEEEecCCCCEEEEecC
Q 041206 242 NLDNLECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKNNAEL---------SSLFGMLDAEAKPVLFSSGK 312 (371)
Q Consensus 242 d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~ 312 (371)
|.++.+.+.++.... .=..++..+..|+.+..++.|.++|..+.+....+ ..+..+.+. ++.+.+..-.
T Consensus 91 D~~tl~~~~ti~~~~-~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~ 168 (243)
T 3mbr_X 91 DLATLTPRARFRYPG-EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWL 168 (243)
T ss_dssp ETTTTEEEEEEECSS-CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred ECCcCcEEEEEeCCC-CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECC
Confidence 999999999988543 33577777776666667889999997766542222 222333333 3435555556
Q ss_pred CCeEEEEEcCCcceeeeecC--------------CceEEEEEeCCCC--eEEeeC
Q 041206 313 DSAIRLYELPSFKLRARIFS--------------RREVEVDQIGPAG--LFFPGD 351 (371)
Q Consensus 313 d~~i~iwd~~~~~~~~~~~~--------------~~~v~~~~~s~~~--~l~~~~ 351 (371)
+..|.+.|..+++.+..+.. ....+.|+++|++ +++||=
T Consensus 169 s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 169 TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 78999999999998777651 1367999999987 666663
No 236
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.80 E-value=2.8e-06 Score=69.38 Aligned_cols=175 Identities=11% Similarity=0.070 Sum_probs=120.3
Q ss_pred ceeeEeeeCccCC--eEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceEEEEeCCCee--EEEeecCCEEEEe--cCCc
Q 041206 86 LATLMKLNGHKKA--VTNVGLPSGSNKLYSGSRDG--RVSVWDRDSGRCVNVITNGAEI--GCLISEGSWVFLG--LPNA 157 (371)
Q Consensus 86 ~~~~~~l~~h~~~--V~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~ 157 (371)
.+.++++. |... ...+.|+ ++.+..+.+.+| .|+.+|+++++.+..+...... ..+...++.++.. .++.
T Consensus 31 ~~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~ 108 (262)
T 3nol_A 31 YQIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSE
T ss_pred eEEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCE
Confidence 45677774 5544 4889998 677777777766 8999999999999998876543 3355566666654 4889
Q ss_pred EEEEEeCCCCee----------EEEEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecC----c--ceEEEEecCCce
Q 041206 158 VKSWRVNAASVN----------ALVVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAP----L--WFCSLSSSNDTR 221 (371)
Q Consensus 158 i~~~~~~~~~v~----------~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~----~--~v~~~~~~~~~~ 221 (371)
+.+||..+..+. .++.+...|+....++.|.++|..+. +....+... . .++.+.+. +|+
T Consensus 109 v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~----~v~~~I~V~~~g~~~~~lNELe~~-~G~ 183 (262)
T 3nol_A 109 GFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESL----TPVRTITVTAHGEELPELNELEWV-DGE 183 (262)
T ss_dssp EEEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTC----SEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCC----eEEEEEEeccCCccccccceeEEE-CCE
Confidence 999999887432 44444556666666788999999987 555555432 1 34567776 677
Q ss_pred eEecccceeeeeCCCeEEEEECCCceEEEEeecC------------CCcEEEEEEc--CCeEEEEe
Q 041206 222 WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGH------------SDTVTSLLFW--DEYLFSSS 273 (371)
Q Consensus 222 l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~------------~~~v~~~~~~--~~~l~s~~ 273 (371)
+++. .-.++.|.+.|.++++.+..+... ....+.++|+ .+.|+..+
T Consensus 184 lyan------~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 184 IFAN------VWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEE------ETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEE------EccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 5544 046889999999999998877642 1244677777 23444443
No 237
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.80 E-value=5.7e-06 Score=70.52 Aligned_cols=216 Identities=12% Similarity=0.026 Sum_probs=128.7
Q ss_pred EEEEEeeccceeeeeeeecceeeccceeeCCccceEEEEEeccCCCCccCCceeeEeeeCccCCeEEEEEcCCCCEEEEE
Q 041206 35 EEREEMFGFGLAAMAIRVCNNWISDSCVYGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGHKKAVTNVGLPSGSNKLYSG 114 (371)
Q Consensus 35 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~ 114 (371)
+..+..........++.+....+ ...+...+.|..|+ . .++ ...+..+...+..++++++|+++++.
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l---~~~d~~~~~i~~~~-------~--~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~ 103 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTL---VWSDLVGRRVLGWR-------E--DGT-VDVLLDATAFTNGNAVDAQQRLVHCE 103 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEE---EEEETTTTEEEEEE-------T--TSC-EEEEEESCSCEEEEEECTTSCEEEEE
T ss_pred eEEEecCCcCccCCeEeCCCCEE---EEEECCCCEEEEEe-------C--CCC-EEEEeCCCCccceeeECCCCCEEEEE
Confidence 34444444444555666654311 11234455677777 2 222 34555667789999999999877666
Q ss_pred eCCCcEEEEECCCCceEEEEeC--CCe---eE--EEeecCCEEEE----ec--------------CCcEEEEEeCCCC--
Q 041206 115 SRDGRVSVWDRDSGRCVNVITN--GAE---IG--CLISEGSWVFL----GL--------------PNAVKSWRVNAAS-- 167 (371)
Q Consensus 115 ~~dg~v~iwd~~~~~~~~~~~~--~~~---~~--~~~~~~~~~~~----~~--------------~~~i~~~~~~~~~-- 167 (371)
..++.|.+|+.+ ++....... ... +. .+.+++.+.++ +. .+.|..++..++.
T Consensus 104 ~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~ 182 (305)
T 3dr2_A 104 HGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ 182 (305)
T ss_dssp TTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE
T ss_pred CCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE
Confidence 666789999986 554322211 111 22 22345666664 21 2345556654443
Q ss_pred -------eeEEEEeCC--EEEEEeCC------CeEEEEeccCCCCcceeeEEEe-cCc-ceEEEEecCCceeEeccccee
Q 041206 168 -------VNALVVNND--LLFAGSEG------GVISVWKGTFVANPFKQVASIR-APL-WFCSLSSSNDTRWNSKEEAAV 230 (371)
Q Consensus 168 -------v~~~~~~~~--~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~-~~~-~v~~~~~~~~~~l~~~~~~~~ 230 (371)
...++|+|+ .|+++... +.|.+|++.... ......+. ... ....+++.++|++.++
T Consensus 183 ~~~~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~~~~~~~~~~~pdgi~~d~~G~lwv~----- 255 (305)
T 3dr2_A 183 RMADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA--LHDRRHFASVPDGLPDGFCVDRGGWLWSS----- 255 (305)
T ss_dssp EEEEESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE--EEEEEEEECCSSSCCCSEEECTTSCEEEC-----
T ss_pred EEecCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC--ccCCeEEEECCCCCCCeEEECCCCCEEEe-----
Confidence 356788887 56666554 789999987641 01111111 112 4567889999988777
Q ss_pred eeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCC
Q 041206 231 FEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDE 276 (371)
Q Consensus 231 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg 276 (371)
..+ .|.+|+.. ++.+..+..+. .+.+++|. ++.|+.++.++
T Consensus 256 --~~~-gv~~~~~~-g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 256 --SGT-GVCVFDSD-GQLLGHIPTPG-TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp --CSS-EEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEEEETTE
T ss_pred --cCC-cEEEECCC-CCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCe
Confidence 644 49999984 67777776554 57888886 45666666654
No 238
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.79 E-value=4.4e-06 Score=68.22 Aligned_cols=180 Identities=14% Similarity=0.041 Sum_probs=119.9
Q ss_pred eeEEEEeCC-EEEEEeCCC--eEEEEeccCCCCcceeeEEEecCcc--eEEEEecCCceeEecccceeeeeCCCeEEEEE
Q 041206 168 VNALVVNND-LLFAGSEGG--VISVWKGTFVANPFKQVASIRAPLW--FCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWN 242 (371)
Q Consensus 168 v~~~~~~~~-~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd 242 (371)
...+.|+.+ ++.+.+.+| .|+++|+.++ +.+..+..... -..+++..+..+... -.++.+.+||
T Consensus 45 tqGL~~~~~~LyestG~~g~S~v~~vD~~Tg----kv~~~~~l~~~~FgeGit~~g~~ly~lt-------w~~~~v~v~D 113 (262)
T 3nol_A 45 TEGFFYRNGYFYESTGLNGRSSIRKVDIESG----KTLQQIELGKRYFGEGISDWKDKIVGLT-------WKNGLGFVWN 113 (262)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEECTTTC----CEEEEEECCTTCCEEEEEEETTEEEEEE-------SSSSEEEEEE
T ss_pred cceEEEECCEEEEECCCCCCceEEEEECCCC----cEEEEEecCCccceeEEEEeCCEEEEEE-------eeCCEEEEEE
Confidence 467788866 455555555 8999999998 67776665442 234555543224444 5789999999
Q ss_pred CCCceEEEEeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCCccee---------cceEEEEecCCCCEEEEecCC
Q 041206 243 LDNLECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKNNAEL---------SSLFGMLDAEAKPVLFSSGKD 313 (371)
Q Consensus 243 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~d 313 (371)
..+.+.+.++.... .=..+++.++.|+.+..++.|.++|..+.+....+ ..+..+.+.+ +.+.+..-.+
T Consensus 114 ~~t~~~~~ti~~~~-eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~-G~lyan~w~~ 191 (262)
T 3nol_A 114 IRNLRQVRSFNYDG-EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVD-GEIFANVWQT 191 (262)
T ss_dssp TTTCCEEEEEECSS-CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEET-TEEEEEETTS
T ss_pred CccCcEEEEEECCC-CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEEC-CEEEEEEccC
Confidence 99999999988533 33567777777777666788999997765542222 2222233443 4355555568
Q ss_pred CeEEEEEcCCcceeeeecC-------------CceEEEEEeCCCC--eEEeeCCCCcEEEEEcc
Q 041206 314 SAIRLYELPSFKLRARIFS-------------RREVEVDQIGPAG--LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 314 ~~i~iwd~~~~~~~~~~~~-------------~~~v~~~~~s~~~--~l~~~~~dg~i~iw~~~ 362 (371)
+.|.+.|..+++.+..+.. ....+.|+|+|++ +++||-. -=++|.++
T Consensus 192 ~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~--Wp~~~ev~ 253 (262)
T 3nol_A 192 NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL--WPKVFEIT 253 (262)
T ss_dssp SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT--CSEEEEEE
T ss_pred CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC--CCceEEEE
Confidence 8999999999998777652 1356999999988 6666632 23444443
No 239
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.76 E-value=9.1e-07 Score=84.05 Aligned_cols=197 Identities=9% Similarity=-0.022 Sum_probs=120.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCCEEEEEeCCCeE
Q 041206 108 SNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNNDLLFAGSEGGVI 187 (371)
Q Consensus 108 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~l~~~~~dg~v 187 (371)
+..|+.++.++.|.-+|..+|+.+.++........... . + .......+++..+.+++++.|+.|
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~----~-~-----------~~~~~~~~a~~~~~v~v~~~dg~l 140 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFK----G-C-----------CDVVNRGVALWKGKVYVGAWDGRL 140 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGG----S-S-----------SCSCCCCCEEETTEEEEECTTSEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccc----c-c-----------ccCCCCCceEECCEEEEEcCCCEE
Confidence 55777788889999999999999988875432100000 0 0 000012344556688888999999
Q ss_pred EEEeccCCCCcceeeEEEecC-c-----ceEEEEecCCceeEecccceeeeeC------CCeEEEEECCCceEEEEeecC
Q 041206 188 SVWKGTFVANPFKQVASIRAP-L-----WFCSLSSSNDTRWNSKEEAAVFEFC------GHTTRTWNLDNLECVQTLKGH 255 (371)
Q Consensus 188 ~iwd~~~~~~~~~~~~~~~~~-~-----~v~~~~~~~~~~l~~~~~~~~~~~~------dg~i~iwd~~~~~~~~~~~~~ 255 (371)
..+|..++ +.+-.+... . .+.+--...++.++.+ +. ++.|+.+|.++++.+.++...
T Consensus 141 ~alD~~tG----~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~-------~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 209 (677)
T 1kb0_A 141 IALDAATG----KEVWHQNTFEGQKGSLTITGAPRVFKGKVIIG-------NGGAEYGVRGYITAYDAETGERKWRWFSV 209 (677)
T ss_dssp EEEETTTC----CEEEEEETTTTCCSSCBCCSCCEEETTEEEEC-------CBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred EEEECCCC----CEEeeecCCcCcCcCcccccCcEEECCEEEEE-------ecccccCCCCEEEEEECCCCcEEEEeccC
Confidence 99999998 565555543 1 1111001114555554 43 799999999999998777642
Q ss_pred CCc--------------------------------EEEEEEc--CCeEEEEeCCC-------------------cEEEEE
Q 041206 256 SDT--------------------------------VTSLLFW--DEYLFSSSLDE-------------------TIKIWL 282 (371)
Q Consensus 256 ~~~--------------------------------v~~~~~~--~~~l~s~~~dg-------------------~i~iwd 282 (371)
... ...++++ .+.++.+..++ .|..+|
T Consensus 210 ~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD 289 (677)
T 1kb0_A 210 PGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALD 289 (677)
T ss_dssp CCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred CCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEE
Confidence 211 1235555 56777666553 477777
Q ss_pred ccCCCCccee-------------c-ceEEEEecCCC--CEEEEecCCCeEEEEEcCCcceeeeec
Q 041206 283 YTHTKNNAEL-------------S-SLFGMLDAEAK--PVLFSSGKDSAIRLYELPSFKLRARIF 331 (371)
Q Consensus 283 ~~~~~~~~~~-------------~-~~~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~ 331 (371)
.++.+..-.. . .+..-...++. ..++.++.+|.++++|..+++++..+.
T Consensus 290 ~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~ 354 (677)
T 1kb0_A 290 PDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN 354 (677)
T ss_dssp TTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred CCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence 6655531110 1 11111111221 478899999999999999999887654
No 240
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.73 E-value=1.8e-05 Score=68.21 Aligned_cols=182 Identities=7% Similarity=-0.090 Sum_probs=111.6
Q ss_pred eeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCceeEecccceeeeeCCCeEEEEECC
Q 041206 168 VNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLD 244 (371)
Q Consensus 168 v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~ 244 (371)
..+..|+++ .+++...++.|..||..++ +. ..+.....+.+++++++++++.+ +.+ .|.+||..
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~----~~-~~~~~~~~v~~i~~~~dg~l~v~-------~~~-gl~~~d~~ 117 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASG----RK-TVHALPFMGSALAKISDSKQLIA-------SDD-GLFLRDTA 117 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTT----EE-EEEECSSCEEEEEEEETTEEEEE-------ETT-EEEEEETT
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCC----cE-EEEECCCcceEEEEeCCCeEEEE-------ECC-CEEEEECC
Confidence 456788875 6666667899999999876 32 23333237899999999987767 644 49999998
Q ss_pred CceEEEEeec----CCCcEEEEEEc--CCeEEEEeCC----CcEEEEEccCCCCcc---eecceEEEEecCCCCEE-EEe
Q 041206 245 NLECVQTLKG----HSDTVTSLLFW--DEYLFSSSLD----ETIKIWLYTHTKNNA---ELSSLFGMLDAEAKPVL-FSS 310 (371)
Q Consensus 245 ~~~~~~~~~~----~~~~v~~~~~~--~~~l~s~~~d----g~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~l-~~~ 310 (371)
+++....... ....+.++.++ ++++++...+ +...||.+...+... .......+.+.++++.+ ++.
T Consensus 118 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 118 TGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp TCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEE
T ss_pred CCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEEEeeCCCcccCCeEEcCCCCEEEEEE
Confidence 8775432221 12357888888 4554443321 233444443221111 11122334444455444 555
Q ss_pred cCCCeEEEEEcC--Cc-ce-----eeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcc
Q 041206 311 GKDSAIRLYELP--SF-KL-----RARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 311 ~~d~~i~iwd~~--~~-~~-----~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~ 362 (371)
+.++.|.+||+. ++ +. ...+. ....+..++++++| ++++...++.|.+|+..
T Consensus 198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 198 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence 667899999986 55 32 11221 24567889999999 66665566789999874
No 241
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.71 E-value=4.9e-06 Score=77.33 Aligned_cols=249 Identities=11% Similarity=0.026 Sum_probs=149.7
Q ss_pred CCEEEEEeC-CCcEEEEEC-CCCceEEEEeCCCee------------EEEeecCCEEEE-ecCCcEEEEEeCCCCee-EE
Q 041206 108 SNKLYSGSR-DGRVSVWDR-DSGRCVNVITNGAEI------------GCLISEGSWVFL-GLPNAVKSWRVNAASVN-AL 171 (371)
Q Consensus 108 ~~~l~s~~~-dg~v~iwd~-~~~~~~~~~~~~~~~------------~~~~~~~~~~~~-~~~~~i~~~~~~~~~v~-~~ 171 (371)
+..++.++. ++.|.-+|. .+|+.+.++...... ......+..+++ ..++.+..+|..++.+. ..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~ 141 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWEV 141 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCCEEEEe
Confidence 456667776 899999999 899999887654321 011223444444 56788888888777432 11
Q ss_pred E---------------EeCCEEEEEeC------CCeEEEEeccCCCCcceeeEEEecCcce-------------------
Q 041206 172 V---------------VNNDLLFAGSE------GGVISVWKGTFVANPFKQVASIRAPLWF------------------- 211 (371)
Q Consensus 172 ~---------------~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~v------------------- 211 (371)
. +..+.+++++. ++.|..+|..++ +.+-.+......
T Consensus 142 ~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG----~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 142 EVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTG----ELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp ECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTC----CEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred cCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCC----cEEEEEccCCCccccccCccccccccccccc
Confidence 1 12236666665 799999999998 444443322100
Q ss_pred --------------------EEEEecCC-ceeEecccceeeeeC----------------CCeEEEEECCCceEEEEeec
Q 041206 212 --------------------CSLSSSND-TRWNSKEEAAVFEFC----------------GHTTRTWNLDNLECVQTLKG 254 (371)
Q Consensus 212 --------------------~~~~~~~~-~~l~~~~~~~~~~~~----------------dg~i~iwd~~~~~~~~~~~~ 254 (371)
..+++.++ +.++.+ .. .+.|..+|.++++.+..++.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~-------~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~ 290 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYG-------SGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQK 290 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEE-------CCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEES
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEE-------CCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecC
Confidence 12344443 344433 22 13699999999999877753
Q ss_pred C----------CCcEE-EEEEcC---CeEEEEeCCCcEEEEEccCCCCccee--c---------------ce--------
Q 041206 255 H----------SDTVT-SLLFWD---EYLFSSSLDETIKIWLYTHTKNNAEL--S---------------SL-------- 295 (371)
Q Consensus 255 ~----------~~~v~-~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~--~---------------~~-------- 295 (371)
. ..++. .....+ ..++.++.+|.+.++|..+.+..-.. . .+
T Consensus 291 ~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~ 370 (571)
T 2ad6_A 291 TPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATR 370 (571)
T ss_dssp STTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCC
T ss_pred CCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCC
Confidence 2 12222 111234 35677888999999996655421100 0 00
Q ss_pred -------------------EEEEecCCCCEEEEec-------------------------------------CCCeEEEE
Q 041206 296 -------------------FGMLDAEAKPVLFSSG-------------------------------------KDSAIRLY 319 (371)
Q Consensus 296 -------------------~~~~~~~~~~~l~~~~-------------------------------------~d~~i~iw 319 (371)
...+.+..+ ++++.. .++.|..|
T Consensus 371 ~~~~~~~~~P~~~Gg~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~ 449 (571)
T 2ad6_A 371 MDHKGTNICPSAMGFHNQGVDSYDPESR-TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAF 449 (571)
T ss_dssp TTCCEEEESSCTTCSSCSCBCEEETTTT-EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEE
T ss_pred CCCCceEECCCCccccCCCCceECCCCC-EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEE
Confidence 001223333 444432 35789999
Q ss_pred EcCCcceeeeecCCceEEEEEeCC-CCeEEeeCCCCcEEEEEccccceec
Q 041206 320 ELPSFKLRARIFSRREVEVDQIGP-AGLFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 320 d~~~~~~~~~~~~~~~v~~~~~s~-~~~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
|+.+++.+.++....++....+.. ++.++.++.||.|+.||..+++.+.
T Consensus 450 D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw 499 (571)
T 2ad6_A 450 DLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELW 499 (571)
T ss_dssp CTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEE
Confidence 999999888876544333322222 3477778999999999999887764
No 242
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=0.00022 Score=69.08 Aligned_cols=255 Identities=10% Similarity=0.044 Sum_probs=162.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC--------CCeeEEEeec---CCEEEEec-CCcEEEEEeC
Q 041206 97 KAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN--------GAEIGCLISE---GSWVFLGL-PNAVKSWRVN 164 (371)
Q Consensus 97 ~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--------~~~~~~~~~~---~~~~~~~~-~~~i~~~~~~ 164 (371)
..|.++...+++..|..|+.++-+..||..+++....... ...+.++..+ +..+..+. .+.+..|+..
T Consensus 66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi~t~~~gl~~~~~~ 145 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKGLWVCTYYRGIEYLDIA 145 (781)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSEEEEEESSSCEEEEETT
T ss_pred cccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCCEEEEECCCCeeEEECC
Confidence 4699999888887466677774699999887765443111 1246666643 34555554 5667667643
Q ss_pred C----------------CCeeEEEEeCC-EEEEEeCCCeEEEEeccCCCCcceeeEEEe--------cCc-ceEEEEecC
Q 041206 165 A----------------ASVNALVVNND-LLFAGSEGGVISVWKGTFVANPFKQVASIR--------APL-WFCSLSSSN 218 (371)
Q Consensus 165 ~----------------~~v~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--------~~~-~v~~~~~~~ 218 (371)
+ ..|.++..+++ .+.+++.++.+..||..+. +. ..+. ... .|.++...+
T Consensus 146 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~----~~-~~~~~~~~~~~~l~~~~i~~i~~d~ 220 (781)
T 3v9f_A 146 TGKFTHYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDK----SV-KHFVHDPQNPNSLPGNDVRCIYKDT 220 (781)
T ss_dssp TTEEEEESTTTCTTCSCCCEEEEEEEETTEEEEEETTTEEEEEETTTT----EE-EEECC--------CCSSEEEEEECT
T ss_pred CCeEEeeccCcccCCCccceEEEEECCCCCEEEEecCCCeEEEcCCCC----ce-EeeecCCCCcccCCCCceeEEEEcC
Confidence 3 24677777655 7777888877889998765 22 1111 112 688999989
Q ss_pred CceeEecccceeeeeCCCeEEEEECCCceEEEEee-------cCCCcEEEEEEc-CCeEEEEeCCCcEEEEEccCCCCc-
Q 041206 219 DTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLK-------GHSDTVTSLLFW-DEYLFSSSLDETIKIWLYTHTKNN- 289 (371)
Q Consensus 219 ~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~- 289 (371)
++.+..| +.+ -+.+||..+++...... .....|.++... ...|..|+..+-|.++|.....-.
T Consensus 221 ~g~lwig-------t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~ 292 (781)
T 3v9f_A 221 NGNIWIG-------TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLL 292 (781)
T ss_dssp TCCEEEE-------ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC----
T ss_pred CCCEEEE-------eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeee
Confidence 8888777 766 68999988765432211 124578888886 567777877566888886543210
Q ss_pred -----------------ceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeee----------cCCceEEEEEeC
Q 041206 290 -----------------AELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARI----------FSRREVEVDQIG 342 (371)
Q Consensus 290 -----------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----------~~~~~v~~~~~s 342 (371)
.....+..+.....+ .|..|..++-|..++.......... .....|.++...
T Consensus 293 ~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d 371 (781)
T 3v9f_A 293 PEQIRFEFIREGDNNYSLSNASARYIFQDSFN-NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDD 371 (781)
T ss_dssp -----CEEECBCSSTTSBSSSCEEEEEECSSC-CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEEC
T ss_pred eeccccccccCCCCCCCCCCCeEEEEEEeCCC-CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEc
Confidence 111234444444444 5777777777899988764422111 124679999998
Q ss_pred CCCeEEeeCCCCcEEEEEccccc
Q 041206 343 PAGLFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 343 ~~~~l~~~~~dg~i~iw~~~~~~ 365 (371)
++|.|..|+.++-|..|+..+++
T Consensus 372 ~~g~lWigt~~~Gl~~~~~~~~~ 394 (781)
T 3v9f_A 372 GQGKLWIGTDGGGINVFENGKRV 394 (781)
T ss_dssp TTSCEEEEEBSSCEEEEETTEEE
T ss_pred CCCCEEEEeCCCcEEEEECCCCe
Confidence 88866666666678888876543
No 243
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.68 E-value=4.7e-06 Score=68.06 Aligned_cols=166 Identities=11% Similarity=0.092 Sum_probs=115.7
Q ss_pred ceeeEeeeCccCC--eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCee--EEEeecCCEEEEe--cCCcEE
Q 041206 86 LATLMKLNGHKKA--VTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEI--GCLISEGSWVFLG--LPNAVK 159 (371)
Q Consensus 86 ~~~~~~l~~h~~~--V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~i~ 159 (371)
.+.+.++. |... ...+.|+ ++.+..+.+.+|.|+.+|+++++.+..+ ..... ..+...++.++.. .++.+.
T Consensus 43 ~~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 43 AHIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEE
T ss_pred eEEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEE
Confidence 45666773 5443 4788888 4567778888899999999999988887 44332 2355565555554 488999
Q ss_pred EEEeCCCCe----------eEEEEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc------ceEEEEecCCceeE
Q 041206 160 SWRVNAASV----------NALVVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL------WFCSLSSSNDTRWN 223 (371)
Q Consensus 160 ~~~~~~~~v----------~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~l~ 223 (371)
+||..+..+ ..++.+...|+.+..++.|.++|..+. +.+..+.... .++.+.|. +|+++
T Consensus 120 V~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~----~v~~~I~V~~~g~~v~~lNeLe~~-dG~ly 194 (268)
T 3nok_A 120 TWSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGF----ALVGAVQVKLRGQPVELINELECA-NGVIY 194 (268)
T ss_dssp EEETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTC----CEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCC----eEEEEEEeCCCCcccccccccEEe-CCEEE
Confidence 999987733 355566666666667899999999987 5555554321 44667777 67755
Q ss_pred ecccceeeeeCCCeEEEEECCCceEEEEeecC-------------CCcEEEEEEc
Q 041206 224 SKEEAAVFEFCGHTTRTWNLDNLECVQTLKGH-------------SDTVTSLLFW 265 (371)
Q Consensus 224 ~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~~ 265 (371)
+. ...+..|.+.|.++++.+..+... ..-.+.|+++
T Consensus 195 an------vw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~d 243 (268)
T 3nok_A 195 AN------IWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVE 243 (268)
T ss_dssp EE------ETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEEC
T ss_pred EE------ECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEc
Confidence 44 046889999999999998877632 1245677777
No 244
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.65 E-value=0.00012 Score=64.63 Aligned_cols=219 Identities=14% Similarity=0.152 Sum_probs=125.4
Q ss_pred CCCCEEEE-EeCCCcEEEEECCCC----ceEEEEeCCC---eeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC-
Q 041206 106 SGSNKLYS-GSRDGRVSVWDRDSG----RCVNVITNGA---EIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND- 176 (371)
Q Consensus 106 ~~~~~l~s-~~~dg~v~iwd~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~- 176 (371)
+++++|+. +..+++|.++|+.+. +..+++...+ .... .....+...|+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~-----------------------s~Ph~~~~~pdG 149 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGY-----------------------SRLHTVHCGPDA 149 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCE-----------------------EEEEEEEECSSC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCC-----------------------CcccceeECCCe
Confidence 77777665 557889999999766 5555552100 0000 01233444455
Q ss_pred EEEEEeCC------CeEEEEeccCCCCcceeeEEEecCc----ceEEEEecCCce-eEecc------cce------eeee
Q 041206 177 LLFAGSEG------GVISVWKGTFVANPFKQVASIRAPL----WFCSLSSSNDTR-WNSKE------EAA------VFEF 233 (371)
Q Consensus 177 ~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~-l~~~~------~~~------~~~~ 233 (371)
.++++..+ |.|.++|..+. +.+..+.... --..+.|+|+++ +++.. ... +.+.
T Consensus 150 i~Vs~~g~~~g~~~g~v~vlD~~T~----~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~ 225 (462)
T 2ece_A 150 IYISALGNEEGEGPGGILMLDHYSF----EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDR 225 (462)
T ss_dssp EEEEEEEETTSCSCCEEEEECTTTC----CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHH
T ss_pred EEEEcCCCcCCCCCCeEEEEECCCC----eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhc
Confidence 33333333 78999999988 6777776332 234578899887 45540 000 0001
Q ss_pred CCCeEEEEECCCceEEEEeecC-C-CcEEEEEE--c--CCeEEEEe------CCCcEEEEEccC-------------CCC
Q 041206 234 CGHTTRTWNLDNLECVQTLKGH-S-DTVTSLLF--W--DEYLFSSS------LDETIKIWLYTH-------------TKN 288 (371)
Q Consensus 234 ~dg~i~iwd~~~~~~~~~~~~~-~-~~v~~~~~--~--~~~l~s~~------~dg~i~iwd~~~-------------~~~ 288 (371)
.+.+|.+||+.+++.++++... . .....+.| + +++++.++ .+++|.+|.... ...
T Consensus 226 ~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v 305 (462)
T 2ece_A 226 YGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPL 305 (462)
T ss_dssp SCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEEC
T ss_pred cCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccc
Confidence 3789999999999888888753 1 23445656 5 45555555 566776654321 100
Q ss_pred cce-----------ecceEEEEecCCCCEEEEe-cCCCeEEEEEcCC---cceeeeecCCc---------------eEEE
Q 041206 289 NAE-----------LSSLFGMLDAEAKPVLFSS-GKDSAIRLYELPS---FKLRARIFSRR---------------EVEV 338 (371)
Q Consensus 289 ~~~-----------~~~~~~~~~~~~~~~l~~~-~~d~~i~iwd~~~---~~~~~~~~~~~---------------~v~~ 338 (371)
... -.....+..++++++|+++ -..+.|.+||+.. .+++..+...+ ....
T Consensus 306 ~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~ 385 (462)
T 2ece_A 306 EGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQM 385 (462)
T ss_dssp CSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCC
T ss_pred cccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCE
Confidence 000 0112233344444455544 4578999999863 34554444321 3688
Q ss_pred EEeCCCC-eEEeeC
Q 041206 339 DQIGPAG-LFFPGD 351 (371)
Q Consensus 339 ~~~s~~~-~l~~~~ 351 (371)
++++||| +|+++.
T Consensus 386 ~~lSpDGk~LyVaN 399 (462)
T 2ece_A 386 LEISRDGRRVYVTN 399 (462)
T ss_dssp EEECTTSSEEEEEC
T ss_pred EEEcCCCCEEEEEc
Confidence 9999999 666665
No 245
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.65 E-value=0.00016 Score=70.17 Aligned_cols=258 Identities=9% Similarity=0.083 Sum_probs=156.5
Q ss_pred CCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceEEEEe------CCCeeEEEeec-CCEEEEe-cCCcEEEEEeCCC
Q 041206 97 KAVTNVGLPS--GSNKLYSGSRDGRVSVWDRDSGRCVNVIT------NGAEIGCLISE-GSWVFLG-LPNAVKSWRVNAA 166 (371)
Q Consensus 97 ~~V~~~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~-~~~~i~~~~~~~~ 166 (371)
..|.++...+ ++. |..++.++.|..+|..+++...... ....+.++..+ ...+.++ .++.+..|+..+.
T Consensus 115 ~~i~~i~~d~~~~g~-lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~ 193 (781)
T 3v9f_A 115 NDVTHITSSVQAGKG-LWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDK 193 (781)
T ss_dssp SCEEEEEECSSTTSE-EEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEEETTEEEEEETTTEEEEEETTTT
T ss_pred CcceEEEecCccCCC-EEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEEEEECCCCCEEEEecCCCeEEEcCCCC
Confidence 3688888877 665 4556544558999987766543211 12345666543 4444444 3446666665432
Q ss_pred ------------------CeeEEEEeCC-EEEEEeCCCeEEEEeccCCCCcceeeEEE-----ecCc-ceEEEEecCCce
Q 041206 167 ------------------SVNALVVNND-LLFAGSEGGVISVWKGTFVANPFKQVASI-----RAPL-WFCSLSSSNDTR 221 (371)
Q Consensus 167 ------------------~v~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-----~~~~-~v~~~~~~~~~~ 221 (371)
.|.++..+++ .|.+|+.+ .+.+||..+... ...... .... .|.++...+++.
T Consensus 194 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~--~~~~~~~~~~~~l~~~~i~~i~~d~~g~ 270 (781)
T 3v9f_A 194 SVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTSK-GLALFNANTETF--TNFHNNPGNIHGALSSYIFSIKQLKDNK 270 (781)
T ss_dssp EEEEECC--------CCSSEEEEEECTTCCEEEEETT-EEEEEETTTTEE--EC-----------CCCCEEEEEECTTSE
T ss_pred ceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeCC-cHheECCCCCcE--EEEEcCCCccccccCceEEEEEECCCCC
Confidence 4677777666 67777766 788999776510 111111 1122 799999999999
Q ss_pred eEecccceeeeeCCCeEEEEECCCceEEEEee--------------cCCCcEEEEEEc-CCeEEEEeCCCcEEEEEccCC
Q 041206 222 WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLK--------------GHSDTVTSLLFW-DEYLFSSSLDETIKIWLYTHT 286 (371)
Q Consensus 222 l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~--------------~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~ 286 (371)
+..| +..+-|.++|..+++...... .....|.++... ...|..|+.++-|..++....
T Consensus 271 lWig-------t~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~ 343 (781)
T 3v9f_A 271 LWIA-------TELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPP 343 (781)
T ss_dssp EEEE-------ESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCC
T ss_pred EEEE-------eCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCC
Confidence 8888 876778899988765322111 134578888887 557888887777888886533
Q ss_pred CC-------------cceecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeee----cCCceEEEEEeCCCCeEEe
Q 041206 287 KN-------------NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARI----FSRREVEVDQIGPAGLFFP 349 (371)
Q Consensus 287 ~~-------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~v~~~~~s~~~~l~~ 349 (371)
.- ......+..+.....+ .|..|+.++-|..||..++...... .....|.++...+++.|..
T Consensus 344 ~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi 422 (781)
T 3v9f_A 344 TFHTWSYSPTQMNESSLSNKVVSSVCDDGQG-KLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF 422 (781)
T ss_dssp SCEEEC----CCCSSCCSSSCEEEEEECTTS-CEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE
T ss_pred cceeeccCccccccCCCCCcceEEEEEcCCC-CEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE
Confidence 21 0011234444444444 4666776667999998765432211 1246799999988885555
Q ss_pred eCCCCcEEEEEccccce
Q 041206 350 GDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 350 ~~~dg~i~iw~~~~~~~ 366 (371)
|+.++-|..++..+++.
T Consensus 423 gt~~~Gl~~~~~~~~~~ 439 (781)
T 3v9f_A 423 GTYLGNISYYNTRLKKF 439 (781)
T ss_dssp EETTEEEEEECSSSCEE
T ss_pred EeccCCEEEEcCCCCcE
Confidence 66667788888765543
No 246
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.64 E-value=2.7e-06 Score=74.18 Aligned_cols=211 Identities=7% Similarity=-0.072 Sum_probs=133.5
Q ss_pred ccccceeEEEEEeeccceeeeeeeecceeecccee------eCCccceEEEEEeccCCCCccCCceeeEeeeCc------
Q 041206 28 DLMKGRAEEREEMFGFGLAAMAIRVCNNWISDSCV------YGDKCRFLHSWVHSVDGDNTTNSLATLMKLNGH------ 95 (371)
Q Consensus 28 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~h------ 95 (371)
|..+++.+..+..-... .++++|....+-.... .|..+..+.+++ ..+++.+.++.-+
T Consensus 52 D~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD--------~~T~~vv~~I~v~~~~~~~ 121 (368)
T 1mda_H 52 CAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFD--------PVTFLPIADIELPDAPRFS 121 (368)
T ss_dssp ETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEEC--------TTTCCEEEEEEETTSCSCC
T ss_pred ECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEE--------CCCCCEEEEEECCCccccc
Confidence 35667888887655444 6788887654322211 124567888888 5677888887643
Q ss_pred -cCCeEEEEEcCCCCEEEEEeC--CCcEEE--EECCCCceEEEEeCCCe----------eEEE-----------------
Q 041206 96 -KKAVTNVGLPSGSNKLYSGSR--DGRVSV--WDRDSGRCVNVITNGAE----------IGCL----------------- 143 (371)
Q Consensus 96 -~~~V~~~~~~~~~~~l~s~~~--dg~v~i--wd~~~~~~~~~~~~~~~----------~~~~----------------- 143 (371)
......++|+|||++|+.+.. +..|.+ +|..+ +.++..... ....
T Consensus 122 ~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~ 198 (368)
T 1mda_H 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAA 198 (368)
T ss_dssp BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECcccccc
Confidence 124568999999999999874 457888 98866 333322110 0000
Q ss_pred --------------------eec-CCEEEEecCCcEEEEEeCCCC-----------------------eeEEEEeCC--E
Q 041206 144 --------------------ISE-GSWVFLGLPNAVKSWRVNAAS-----------------------VNALVVNND--L 177 (371)
Q Consensus 144 --------------------~~~-~~~~~~~~~~~i~~~~~~~~~-----------------------v~~~~~~~~--~ 177 (371)
..+ +.++++.. +.+.+.|..+.. ...+.++++ .
T Consensus 199 ~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~ 277 (368)
T 1mda_H 199 AGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG 277 (368)
T ss_dssp CEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred CCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCE
Confidence 111 12233333 566666664321 111667776 5
Q ss_pred EEEEeC---------CCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce--eEecccceeeee-CCCeEEEEECCC
Q 041206 178 LFAGSE---------GGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR--WNSKEEAAVFEF-CGHTTRTWNLDN 245 (371)
Q Consensus 178 l~~~~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~~~~~~~-~dg~i~iwd~~~ 245 (371)
++++.. ++.+.++|+.+. +.+..+........++++||++ +++. . .++.|.++|+.+
T Consensus 278 lyV~~~~~~~~~~~~~~~~~ViD~~t~----~vv~~i~vg~~p~gi~~s~Dg~~l~va~-------~~~~~~VsVID~~t 346 (368)
T 1mda_H 278 IMILTVEHSRSCLAAAENTSSVTASVG----QTSGPISNGHDSDAIIAAQDGASDNYAN-------SAGTEVLDIYDAAS 346 (368)
T ss_dssp EEEEEEECSSCTTSCEEEEEEEESSSC----CEEECCEEEEEECEEEECCSSSCEEEEE-------ETTTTEEEEEESSS
T ss_pred EEEEeccccCcccccCCCEEEEECCCC----eEEEEEECCCCcceEEECCCCCEEEEEc-------cCCCCeEEEEECCC
Confidence 554432 235669999998 7777776655788999999996 4555 5 599999999999
Q ss_pred ceEEEEeecCCCcEEEEEE
Q 041206 246 LECVQTLKGHSDTVTSLLF 264 (371)
Q Consensus 246 ~~~~~~~~~~~~~v~~~~~ 264 (371)
++.+.++.....+ ..+++
T Consensus 347 ~kvv~~I~vg~~P-~~i~~ 364 (368)
T 1mda_H 347 DQDQSSVELDKGP-ESLSV 364 (368)
T ss_dssp CEEEEECCCCSCC-CEEEC
T ss_pred CcEEEEEECCCCC-CEEEe
Confidence 9999998755433 34444
No 247
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.64 E-value=4.3e-05 Score=72.50 Aligned_cols=213 Identities=14% Similarity=0.158 Sum_probs=129.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeCCC-----eeE-EEeecCCEEEEec-------CCcEEEEEeCCCCee-----
Q 041206 108 SNKLYSGSRDGRVSVWDRDSGRCVNVITNGA-----EIG-CLISEGSWVFLGL-------PNAVKSWRVNAASVN----- 169 (371)
Q Consensus 108 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~-------~~~i~~~~~~~~~v~----- 169 (371)
+..++.++.|+.|..+|..+|+.+..+.... .+. .....+..++++. ++.+..+|..++.+.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 5678888899999999999999998877531 111 0011234444432 367888887766221
Q ss_pred -------------------------------------EEEEeCC--EEEEEeCCC-------------------eEEEEe
Q 041206 170 -------------------------------------ALVVNND--LLFAGSEGG-------------------VISVWK 191 (371)
Q Consensus 170 -------------------------------------~~~~~~~--~l~~~~~dg-------------------~v~iwd 191 (371)
.++++++ .++.++.++ .|..+|
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD 276 (668)
T 1kv9_A 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR 276 (668)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence 2456554 777777665 389999
Q ss_pred ccCCCCcceeeEEEecC----------cceEEEEecCCce----eEecccceeeeeCCCeEEEEECCCceEEEEeecCCC
Q 041206 192 GTFVANPFKQVASIRAP----------LWFCSLSSSNDTR----WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSD 257 (371)
Q Consensus 192 ~~~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~----l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 257 (371)
..++ +.+-.++.. .+.....+..+++ ++.+ +.+|.++++|.++|+.+...+....
T Consensus 277 ~~tG----~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~-------~~~G~l~~lD~~tG~~l~~~~~~~~ 345 (668)
T 1kv9_A 277 PDTG----KLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQA-------PKNGFFYVLDRTNGKLISAEKFGKV 345 (668)
T ss_dssp TTTC----CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEEC-------CTTSEEEEEETTTCCEEEEEESSCC
T ss_pred CCCC----ceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEE-------CCCCEEEEEECCCCCEecccccccc
Confidence 9998 555555432 1111122222443 6777 9999999999999998854432210
Q ss_pred ------------cE------------------------EEEEEcC--CeEEE----------------------------
Q 041206 258 ------------TV------------------------TSLLFWD--EYLFS---------------------------- 271 (371)
Q Consensus 258 ------------~v------------------------~~~~~~~--~~l~s---------------------------- 271 (371)
++ ..+++++ .+++.
T Consensus 346 ~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 425 (668)
T 1kv9_A 346 TWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGF 425 (668)
T ss_dssp CSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCG
T ss_pred ccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccc
Confidence 00 0133431 22221
Q ss_pred --------EeCCCcEEEEEccCCCCccee---cce-EEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecC
Q 041206 272 --------SSLDETIKIWLYTHTKNNAEL---SSL-FGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFS 332 (371)
Q Consensus 272 --------~~~dg~i~iwd~~~~~~~~~~---~~~-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 332 (371)
...+|.|..||+.+.+..-.. ... .......++ +++.++.|+.++.||.++++.+.++..
T Consensus 426 ~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg-~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 426 ADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGN-LVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp GGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCC-EEEEECCcccchhhhhhcChhheEecC
Confidence 113478999998776531111 011 112233344 888899999999999999999988864
No 248
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.61 E-value=6.3e-05 Score=62.59 Aligned_cols=209 Identities=11% Similarity=0.047 Sum_probs=126.6
Q ss_pred CCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeC
Q 041206 97 KAVTNVGLPSGSNKLYSG-SRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNN 175 (371)
Q Consensus 97 ~~V~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~ 175 (371)
..+..+++++++..|+.+ ..++.|..++...+.....+... -.....+++++
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~---------------------------~~~p~~ia~d~ 88 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD---------------------------LGSPEGIALDH 88 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT---------------------------CCCEEEEEEET
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC---------------------------CCCccEEEEEe
Confidence 457899999966555544 45788999998765433222211 12467888886
Q ss_pred C--EEEEE-eCCCeEEEEeccCCCCcceeeEEEecC-cceEEEEecCC-ceeEecccceeeeeC---CCeEEEEECCCce
Q 041206 176 D--LLFAG-SEGGVISVWKGTFVANPFKQVASIRAP-LWFCSLSSSND-TRWNSKEEAAVFEFC---GHTTRTWNLDNLE 247 (371)
Q Consensus 176 ~--~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~-~~l~~~~~~~~~~~~---dg~i~iwd~~~~~ 247 (371)
+ .++.+ ...+.|.++++... ......... .....++++|+ +.++.+ .. .+.|..+++....
T Consensus 89 ~~~~lyv~d~~~~~I~~~~~~g~----~~~~~~~~~~~~P~~i~vd~~~g~lyv~-------~~~~~~~~I~~~~~dg~~ 157 (267)
T 1npe_A 89 LGRTIFWTDSQLDRIEVAKMDGT----QRRVLFDTGLVNPRGIVTDPVRGNLYWT-------DWNRDNPKIETSHMDGTN 157 (267)
T ss_dssp TTTEEEEEETTTTEEEEEETTSC----SCEEEECSSCSSEEEEEEETTTTEEEEE-------ECCSSSCEEEEEETTSCC
T ss_pred cCCeEEEEECCCCEEEEEEcCCC----CEEEEEECCCCCccEEEEeeCCCEEEEE-------ECCCCCcEEEEEecCCCC
Confidence 4 44444 45678999998654 111122222 26789999995 565544 33 4688888876432
Q ss_pred EEEEee-cCCCcEEEEEEc--CCeE-EEEeCCCcEEEEEccCCCCccee---cceEEEEecCCCCEEEEecCCCeEEEEE
Q 041206 248 CVQTLK-GHSDTVTSLLFW--DEYL-FSSSLDETIKIWLYTHTKNNAEL---SSLFGMLDAEAKPVLFSSGKDSAIRLYE 320 (371)
Q Consensus 248 ~~~~~~-~~~~~v~~~~~~--~~~l-~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~iwd 320 (371)
...+. ........++++ ++.| ++-...+.|.++|+......... .....+.. +++.++++....+.|..+|
T Consensus 158 -~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~-d~~~lyva~~~~~~v~~~d 235 (267)
T 1npe_A 158 -RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTS-YGKNLYYTDWKTNSVIAMD 235 (267)
T ss_dssp -CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred -cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEE-eCCEEEEEECCCCeEEEEe
Confidence 22222 223456788887 3444 55556688999997643211110 11112222 3444555656678999999
Q ss_pred cCCcceeeeecCCc--eEEEEEeCCCC
Q 041206 321 LPSFKLRARIFSRR--EVEVDQIGPAG 345 (371)
Q Consensus 321 ~~~~~~~~~~~~~~--~v~~~~~s~~~ 345 (371)
..+++.+..+.... ....+++.|++
T Consensus 236 ~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 236 LAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp TTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred CCCCCceEEEccccccccceeeecCcc
Confidence 99988887776322 46778887775
No 249
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.61 E-value=1.5e-05 Score=76.25 Aligned_cols=239 Identities=15% Similarity=0.115 Sum_probs=132.5
Q ss_pred eccceeeeeeeecceeeccceee-CCccceEEEEEeccCCCCccCCceeeE-eeeCccCCeEEEEEcCCCCEEEEEeCCC
Q 041206 41 FGFGLAAMAIRVCNNWISDSCVY-GDKCRFLHSWVHSVDGDNTTNSLATLM-KLNGHKKAVTNVGLPSGSNKLYSGSRDG 118 (371)
Q Consensus 41 h~~~v~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~-~l~~h~~~V~~~~~~~~~~~l~s~~~dg 118 (371)
|...+..++++|...+++-.... |+....|++++ ..+++.+. .+.+ .....++|+ |++.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~d--------l~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~ 195 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMD--------VESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDK 195 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEE--------TTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSC
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEE--------CCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecC
Confidence 33456666788877765533332 33446788888 23334332 2221 113577899 999999888774
Q ss_pred c-------------EEEEECCCCce--EEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EE-EE
Q 041206 119 R-------------VSVWDRDSGRC--VNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LL-FA 180 (371)
Q Consensus 119 ~-------------v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l-~~ 180 (371)
. |++|++.++.. ...+..... +.....++.++|+ +| ++
T Consensus 196 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~------------------------~~~~~~~~~~SpDg~~l~~~ 251 (693)
T 3iuj_A 196 PDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPA------------------------QHHRYVGATVTEDDRFLLIS 251 (693)
T ss_dssp CC-------CCCCEEEEEETTSCGGGCEEEESCSGG------------------------GCCSEEEEEECTTSCEEEEE
T ss_pred cccccccccCCCcEEEEEECCCCcccceEEEecCCC------------------------CCeEEEEEEEcCCCCEEEEE
Confidence 3 89999887653 222221110 0112566788887 44 33
Q ss_pred EeC---CCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc-ee-EecccceeeeeC---CCeEEEEECCCceE--E
Q 041206 181 GSE---GGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT-RW-NSKEEAAVFEFC---GHTTRTWNLDNLEC--V 249 (371)
Q Consensus 181 ~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~l-~~~~~~~~~~~~---dg~i~iwd~~~~~~--~ 249 (371)
... .+.|+++|+.++.. ....+..+. ..... +++++ .+ +.+ .. .+.|..+|+.++.. .
T Consensus 252 ~~~~~~~~~i~~~d~~~~~~---~~~~l~~~~~~~~~~-~~~~g~~l~~~t-------~~~~~~~~l~~~d~~~~~~~~~ 320 (693)
T 3iuj_A 252 AANSTSGNRLYVKDLSQENA---PLLTVQGDLDADVSL-VDNKGSTLYLLT-------NRDAPNRRLVTVDAANPGPAHW 320 (693)
T ss_dssp EESSSSCCEEEEEETTSTTC---CCEEEECSSSSCEEE-EEEETTEEEEEE-------CTTCTTCEEEEEETTSCCGGGC
T ss_pred EccCCCCcEEEEEECCCCCC---ceEEEeCCCCceEEE-EeccCCEEEEEE-------CCCCCCCEEEEEeCCCCCcccc
Confidence 332 35899999987632 344455554 44443 45544 44 333 33 36899999987654 2
Q ss_pred EEeecCCCcEEEEEEcCCeEEEEeC-CC--cEEEEEccCCCCcc----eecceEEEE-ecCCCCEEEEecC---CCeEEE
Q 041206 250 QTLKGHSDTVTSLLFWDEYLFSSSL-DE--TIKIWLYTHTKNNA----ELSSLFGML-DAEAKPVLFSSGK---DSAIRL 318 (371)
Q Consensus 250 ~~~~~~~~~v~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~----~~~~~~~~~-~~~~~~~l~~~~~---d~~i~i 318 (371)
+.+..|...+..+...+++|+.... ++ .|++|++....... ....+.... .+++..++++.+. -+.+..
T Consensus 321 ~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~ 400 (693)
T 3iuj_A 321 RDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYR 400 (693)
T ss_dssp EEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEE
T ss_pred EEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEE
Confidence 4455565555444444776666554 44 68888876432111 011122222 2344434444332 278999
Q ss_pred EEcCCcc
Q 041206 319 YELPSFK 325 (371)
Q Consensus 319 wd~~~~~ 325 (371)
||+.+++
T Consensus 401 ~d~~~g~ 407 (693)
T 3iuj_A 401 FEPKSGA 407 (693)
T ss_dssp ECTTTCC
T ss_pred EECCCCe
Confidence 9987765
No 250
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.59 E-value=5e-06 Score=72.22 Aligned_cols=158 Identities=9% Similarity=0.007 Sum_probs=91.1
Q ss_pred CccCCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCe
Q 041206 94 GHKKAVTNVGLPSGSNKLYSGSR-----DGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASV 168 (371)
Q Consensus 94 ~h~~~V~~~~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v 168 (371)
+|-..+.+++++++++++++-.. ++.|.+||+.+++.+..+..+.... .+...+
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~---------------------~~~~~~ 122 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPIT---------------------LSNSFV 122 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTS---------------------CTTCCC
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhc---------------------cccccc
Confidence 46678999999999876665433 5789999999998877765431100 001123
Q ss_pred eEEEEeCC--EE-EEEe---CCCeEEEEeccCCCCcceeeEEEec-----------------------------Cc-ceE
Q 041206 169 NALVVNND--LL-FAGS---EGGVISVWKGTFVANPFKQVASIRA-----------------------------PL-WFC 212 (371)
Q Consensus 169 ~~~~~~~~--~l-~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~-----------------------------~~-~v~ 212 (371)
..++++++ .+ ++-. .++.|.+||+.++ +....+.. .. .+.
T Consensus 123 ~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g----~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~ 198 (343)
T 2qe8_A 123 NDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG----LAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVN 198 (343)
T ss_dssp CEEEEETTTTEEEEEECCSGGGCEEEEEETTTC----CEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEE
T ss_pred ceEEEecCCCEEEEEcCccCCCCeEEEEECCCC----CEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccc
Confidence 45555532 22 2222 3455555655443 11111110 11 367
Q ss_pred EEEecCCce-eEecccceeeeeCCC-eEEEEECC---Cc-----eEEE--EeecCCCcEEEEEEc--CCeEEEEeCCCcE
Q 041206 213 SLSSSNDTR-WNSKEEAAVFEFCGH-TTRTWNLD---NL-----ECVQ--TLKGHSDTVTSLLFW--DEYLFSSSLDETI 278 (371)
Q Consensus 213 ~~~~~~~~~-l~~~~~~~~~~~~dg-~i~iwd~~---~~-----~~~~--~~~~~~~~v~~~~~~--~~~l~s~~~dg~i 278 (371)
.++++|+++ |+.+ ...+ .++.++.. .+ +... ...++......++++ ++++++...++.|
T Consensus 199 gia~s~dg~~ly~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V 271 (343)
T 2qe8_A 199 GIVLDAENEWLYLS-------PMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAI 271 (343)
T ss_dssp EEEECTTSCEEEEE-------ESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEE
T ss_pred eeEeccCCCEEEEE-------eCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeE
Confidence 899999995 6655 5444 55555532 11 0000 111233455678887 6788888888999
Q ss_pred EEEEc
Q 041206 279 KIWLY 283 (371)
Q Consensus 279 ~iwd~ 283 (371)
.+||.
T Consensus 272 ~~~d~ 276 (343)
T 2qe8_A 272 GVITS 276 (343)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 99998
No 251
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.59 E-value=1.6e-05 Score=73.95 Aligned_cols=57 Identities=14% Similarity=0.055 Sum_probs=40.7
Q ss_pred CCCeEEEEEcCCcceeeeecCCceEEEEEeC-CCCeEEeeCCCCcEEEEEccccceec
Q 041206 312 KDSAIRLYELPSFKLRARIFSRREVEVDQIG-PAGLFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 312 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s-~~~~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
.+|.|.-||+.+++.+.+.....+...-.+. ..++++.++.||.++.||..+++.+.
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW 508 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLW 508 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEE
Confidence 3578999999999988877543322211112 23477779999999999999988765
No 252
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.56 E-value=2.7e-05 Score=72.50 Aligned_cols=56 Identities=13% Similarity=0.056 Sum_probs=40.9
Q ss_pred CCeEEEEEcCCcceeeeecCCceEEEEEe-CCCCeEEeeCCCCcEEEEEccccceec
Q 041206 313 DSAIRLYELPSFKLRARIFSRREVEVDQI-GPAGLFFPGDASGSVGVWKWLLAEQQK 368 (371)
Q Consensus 313 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~-s~~~~l~~~~~dg~i~iw~~~~~~~~~ 368 (371)
+|.|.-||+.+++.+.+.....++..-.. ..+++++.|+.||.++.||..+++.+.
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW 521 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELW 521 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEE
Confidence 58899999999998887764333322111 124477779999999999999988765
No 253
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.56 E-value=0.0002 Score=61.43 Aligned_cols=259 Identities=14% Similarity=0.069 Sum_probs=140.3
Q ss_pred eeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEE-EeecCCEEEEecCCcEEEEEeCCCCeeE
Q 041206 92 LNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGC-LISEGSWVFLGLPNAVKSWRVNAASVNA 170 (371)
Q Consensus 92 l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~v~~ 170 (371)
+.+.-....++++++++++++++..++.|..||..+++.. .+........ ...++.. . . .+......+..
T Consensus 14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~------~-~-~~~~~~~~p~g 84 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENST------D-A-EKRPLCGRTYD 84 (322)
T ss_dssp EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCC------C-G-GGHHHHCCEEE
T ss_pred cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEeccccccccccccccc------c-h-hccccCCCCce
Confidence 3443345678889999988888888999999998765433 2221000000 0000000 0 0 00000113678
Q ss_pred EEEeC-C-EEEEEeCCCeEEEEeccCCCCcceeeEE-EecCc--ceEEEEecC-CceeEecccc-----------eeeee
Q 041206 171 LVVNN-D-LLFAGSEGGVISVWKGTFVANPFKQVAS-IRAPL--WFCSLSSSN-DTRWNSKEEA-----------AVFEF 233 (371)
Q Consensus 171 ~~~~~-~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~--~v~~~~~~~-~~~l~~~~~~-----------~~~~~ 233 (371)
+++++ + .|+++...+.|..+|..++.. +.+.. ..+.. ....+++.+ +|.++.+... ++.+.
T Consensus 85 i~~~~~~g~l~v~d~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~ 162 (322)
T 2fp8_A 85 ISYNLQNNQLYIVDCYYHLSVVGSEGGHA--TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSD 162 (322)
T ss_dssp EEEETTTTEEEEEETTTEEEEECTTCEEC--EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTC
T ss_pred EEEcCCCCcEEEEECCCCEEEEeCCCCEE--EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccC
Confidence 88886 4 777776667788888765410 11111 11111 568899999 8886554100 00001
Q ss_pred CCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEE-eCCCcEEEEEccCCCCc--cee---cceEEEEecCCCC
Q 041206 234 CGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSS-SLDETIKIWLYTHTKNN--AEL---SSLFGMLDAEAKP 305 (371)
Q Consensus 234 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~i~iwd~~~~~~~--~~~---~~~~~~~~~~~~~ 305 (371)
.++.|..+|..+++...... .......++++ ++.|+.+ ...+.|.+|++...... ..+ .....+...++++
T Consensus 163 ~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~gP~gi~~d~~G~ 241 (322)
T 2fp8_A 163 KTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNPGNIKRNADGH 241 (322)
T ss_dssp CCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSSEEEEEECTTSC
T ss_pred CCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCCCCCeEECCCCC
Confidence 24789999988776533222 12234578888 4555544 56688999998643210 010 0022333344444
Q ss_pred EEEEecC----------CCeEEEEEcCCcceeeeecC-----CceEEEEEeCCCC-eEEeeCCCCcEEEEEcccc
Q 041206 306 VLFSSGK----------DSAIRLYELPSFKLRARIFS-----RREVEVDQIGPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 306 ~l~~~~~----------d~~i~iwd~~~~~~~~~~~~-----~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
+.++... .+.|..+|.. ++.+..+.. -..+..+++ .++ ++++...++.|.++++...
T Consensus 242 l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 242 FWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred EEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 5554433 4678888874 565555542 234666666 456 6666667889999998654
No 254
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.55 E-value=0.00022 Score=59.23 Aligned_cols=188 Identities=9% Similarity=-0.047 Sum_probs=113.2
Q ss_pred eeEEEEeCC--EEEEE-eCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc-ee-EecccceeeeeCCCeEEEE
Q 041206 168 VNALVVNND--LLFAG-SEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT-RW-NSKEEAAVFEFCGHTTRTW 241 (371)
Q Consensus 168 v~~~~~~~~--~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~l-~~~~~~~~~~~~dg~i~iw 241 (371)
+..++++++ .|+.+ ...+.|..+++... .....+.... ....+++.+++ .+ ++- ...+.|.++
T Consensus 38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~----~~~~~~~~~~~~p~~ia~d~~~~~lyv~d-------~~~~~I~~~ 106 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGG----EPTTIIRQDLGSPEGIALDHLGRTIFWTD-------SQLDRIEVA 106 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSC----CCEEEECTTCCCEEEEEEETTTTEEEEEE-------TTTTEEEEE
T ss_pred EEEEEEecCCCEEEEEECCCCEEEEEecCCC----CcEEEEECCCCCccEEEEEecCCeEEEEE-------CCCCEEEEE
Confidence 678889874 44444 45689999998765 2222232322 77899999864 54 444 557899999
Q ss_pred ECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeC---CCcEEEEEccCCCCcc----eecceEEEE-ecCCCCEEEEec
Q 041206 242 NLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSL---DETIKIWLYTHTKNNA----ELSSLFGML-DAEAKPVLFSSG 311 (371)
Q Consensus 242 d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~---dg~i~iwd~~~~~~~~----~~~~~~~~~-~~~~~~~l~~~~ 311 (371)
++..................++++ +..|+.+.. .+.|..+++....... .......+. .++++.+.++-.
T Consensus 107 ~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~ 186 (267)
T 1npe_A 107 KMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA 186 (267)
T ss_dssp ETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET
T ss_pred EcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC
Confidence 987533222222222456788887 355554443 3678888865432211 111223333 444554556666
Q ss_pred CCCeEEEEEcCCcceeeeecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccccee
Q 041206 312 KDSAIRLYELPSFKLRARIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLAEQQ 367 (371)
Q Consensus 312 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~~~~ 367 (371)
..+.|.++|+.................++.. ++ .+++....+.|.+++..+++..
T Consensus 187 ~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 187 GTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEM 242 (267)
T ss_dssp TTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCEEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCce
Confidence 7789999999865433322233334667764 34 6666667789999999876543
No 255
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.52 E-value=0.00015 Score=58.73 Aligned_cols=162 Identities=17% Similarity=0.069 Sum_probs=108.7
Q ss_pred CceeeEeeeCccC--CeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEE
Q 041206 85 SLATLMKLNGHKK--AVTNVGLPSGSNKLYSGSRDG--RVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKS 160 (371)
Q Consensus 85 ~~~~~~~l~~h~~--~V~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (371)
..+.+.++ .|.. -...+.|++ +.+..+.+.+| .|+.+|+.+++.+..+......
T Consensus 8 ~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~-------------------- 65 (243)
T 3mbr_X 8 GYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY-------------------- 65 (243)
T ss_dssp CEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC--------------------
T ss_pred ceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc--------------------
Confidence 45677777 4654 467899986 55666666654 8999999999999888754321
Q ss_pred EEeCCCCeeEEEEeCC-EEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCc-eeEecccceeeeeCCCeE
Q 041206 161 WRVNAASVNALVVNND-LLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDT-RWNSKEEAAVFEFCGHTT 238 (371)
Q Consensus 161 ~~~~~~~v~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~~~~~~~~dg~i 238 (371)
--..+++..+ .....-.++.+.+||..+. +.+.++.....-..++ +++ +|+.+ ..++.|
T Consensus 66 ------fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl----~~~~ti~~~~~Gwglt--~dg~~L~vS-------dgs~~l 126 (243)
T 3mbr_X 66 ------FGAGIVAWRDRLIQLTWRNHEGFVYDLATL----TPRARFRYPGEGWALT--SDDSHLYMS-------DGTAVI 126 (243)
T ss_dssp ------CEEEEEEETTEEEEEESSSSEEEEEETTTT----EEEEEEECSSCCCEEE--ECSSCEEEE-------CSSSEE
T ss_pred ------ceeEEEEeCCEEEEEEeeCCEEEEEECCcC----cEEEEEeCCCCceEEe--eCCCEEEEE-------CCCCeE
Confidence 0234555566 3333446889999999998 8888887655223444 344 46666 668999
Q ss_pred EEEECCCceEEEEeecCC-----CcEEEEEEcCCeE-EEEeCCCcEEEEEccCCC
Q 041206 239 RTWNLDNLECVQTLKGHS-----DTVTSLLFWDEYL-FSSSLDETIKIWLYTHTK 287 (371)
Q Consensus 239 ~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~l-~s~~~dg~i~iwd~~~~~ 287 (371)
.++|..+.+.+.++.-.. ..++.+.+.+..+ +....+..|.+.|.++.+
T Consensus 127 ~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~ 181 (243)
T 3mbr_X 127 RKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGK 181 (243)
T ss_dssp EEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCB
T ss_pred EEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCC
Confidence 999999998887776422 2455677764444 444456678888755444
No 256
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.51 E-value=0.00027 Score=65.77 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=45.2
Q ss_pred CCcEEEEEccCCCCccee---cce-EEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecCCceEEE--EEeCCCC
Q 041206 275 DETIKIWLYTHTKNNAEL---SSL-FGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSRREVEV--DQIGPAG 345 (371)
Q Consensus 275 dg~i~iwd~~~~~~~~~~---~~~-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~--~~~s~~~ 345 (371)
+|.|..||+.+.+..-.. ... .......++ +++.++.|+.++.||.++++++.++.....+.+ +.|..+|
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg-lvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G 540 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDG 540 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCC-EEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECC
Confidence 577888888776632111 000 111122344 788899999999999999999998875443332 5566788
No 257
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.48 E-value=0.00039 Score=58.27 Aligned_cols=258 Identities=10% Similarity=0.042 Sum_probs=152.4
Q ss_pred CCccceEEEEEeccCCCCccCCceeeE--eeeCccCCeE------EEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 041206 64 GDKCRFLHSWVHSVDGDNTTNSLATLM--KLNGHKKAVT------NVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVIT 135 (371)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~~~~~~~~~~--~l~~h~~~V~------~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 135 (371)
-..|++|.+-.. ..+...+. .+.......+ +.-.+|..+.+|--. ..++.|+|+++.+.++.+.
T Consensus 33 mESDkyicVrE~-------~~~~~~VvIiDl~n~~~~~Rrpi~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~ 104 (365)
T 2xzh_A 33 MESDKFICIREK-------VGEQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT 104 (365)
T ss_dssp EEETTEEEEEEE-------ETTEEEEEEEETTSTTSCEEEECCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE
T ss_pred eecCceEEEEec-------CCCCCEEEEEECCCCCCccccccccceeeeCCCccEEEEec-CCeEEEechHHhhhhccee
Confidence 457888888772 22222333 2332223322 344678888777766 6789999999998888877
Q ss_pred CCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEe-CCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-----
Q 041206 136 NGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVN-NDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL----- 209 (371)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~----- 209 (371)
..++ |.--.|- ++.|+..+ +..|+-|++.... .+.+.+..|.
T Consensus 105 ~~e~----------------------------VvfWkWis~~~L~lVT-~taVyHWs~~~~s---~P~kvFdR~~~L~~~ 152 (365)
T 2xzh_A 105 MTDD----------------------------VTFWKWISLNTVALVT-DNAVYHWSMEGES---QPVKMFDRHSSLAGC 152 (365)
T ss_dssp CSSC----------------------------EEEEEECSSSEEEEEE-SSEEEEEESSTTC---CCEEEEECCGGGTTC
T ss_pred cCCc----------------------------cEEEEecCCCeEEEEc-CCcEEEEcccCCC---CCceeeecchhcccc
Confidence 6544 3333443 33444443 4679999987643 4555665553
Q ss_pred ceEEEEecCCce--eEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEcC----C-eEEEEeC---CCcEE
Q 041206 210 WFCSLSSSNDTR--WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWD----E-YLFSSSL---DETIK 279 (371)
Q Consensus 210 ~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~----~-~l~s~~~---dg~i~ 279 (371)
.|..-..+++.+ +++|-. ---+.-.|.+.+|..+.+ .-+.+++|.+....+...+ . .++-+.. .+++.
T Consensus 153 QIInY~~d~~~kW~~l~GI~-~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLh 230 (365)
T 2xzh_A 153 QIINYRTDAKQKWLLLTGIS-AQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH 230 (365)
T ss_dssp EEEEEEECTTSCEEEEEEEE-EETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEE
T ss_pred eEEEEEECCCCCEEEEEeEe-ccCCccceeEEEEeeccc-ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEE
Confidence 677888888887 344400 000023478899998854 4577888876655554442 2 2333322 26899
Q ss_pred EEEccCCC-Cccee-c---------------ceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CCceEEEEEe
Q 041206 280 IWLYTHTK-NNAEL-S---------------SLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SRREVEVDQI 341 (371)
Q Consensus 280 iwd~~~~~-~~~~~-~---------------~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~ 341 (371)
+-++.... ..... . .+....+...+ +++.-..-|.|++||+.++.++..-. ..++|...+-
T Consensus 231 IiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kyg-viyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~ 309 (365)
T 2xzh_A 231 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAP 309 (365)
T ss_dssp EEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred EEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCC-EEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecc
Confidence 99986541 11111 1 12222233334 77778889999999999999887665 4555655554
Q ss_pred CCCC-eEEeeCCCCcEEEEEcccc
Q 041206 342 GPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 342 s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
+... =++.....|.|.--.+++.
T Consensus 310 ~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 310 HEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EGGGTEEEEEETTCEEEEEEECTT
T ss_pred cCCCCcEEEEcCCCEEEEEEECcc
Confidence 4332 3444447777766555543
No 258
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.46 E-value=0.00011 Score=68.40 Aligned_cols=225 Identities=10% Similarity=0.019 Sum_probs=134.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeCCC-----eeEE--EeecCCEEEEec------CCcEEEEEeCCCCee-----
Q 041206 108 SNKLYSGSRDGRVSVWDRDSGRCVNVITNGA-----EIGC--LISEGSWVFLGL------PNAVKSWRVNAASVN----- 169 (371)
Q Consensus 108 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~------~~~i~~~~~~~~~v~----- 169 (371)
+..++.++.|+.|..+|..+|+.+....... .+.. +..++..++... ++.+..+|..++.+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 5678888889999999999999998876543 1111 122343333333 578888888776321
Q ss_pred --------------------------------------------EEEEeCC--EEEEEeCC----------------CeE
Q 041206 170 --------------------------------------------ALVVNND--LLFAGSEG----------------GVI 187 (371)
Q Consensus 170 --------------------------------------------~~~~~~~--~l~~~~~d----------------g~v 187 (371)
.++++++ .++.++.+ +.|
T Consensus 195 ~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v 274 (571)
T 2ad6_A 195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI 274 (571)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred CCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEE
Confidence 1344553 55555432 358
Q ss_pred EEEeccCCCCcceeeEEEecC----------c-ceEEEEecCCce----eEecccceeeeeCCCeEEEEECCCceEEEEe
Q 041206 188 SVWKGTFVANPFKQVASIRAP----------L-WFCSLSSSNDTR----WNSKEEAAVFEFCGHTTRTWNLDNLECVQTL 252 (371)
Q Consensus 188 ~iwd~~~~~~~~~~~~~~~~~----------~-~v~~~~~~~~~~----l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~ 252 (371)
..+|..++ +.+-.++.. . ++. +....+|+ ++.+ +.+|.++++|.++++.+..+
T Consensus 275 ~Ald~~tG----~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~-------~~~G~l~~lD~~tG~~~w~~ 342 (571)
T 2ad6_A 275 WGRDLDTG----MAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHI-------DRNGILYTLNRENGNLIVAE 342 (571)
T ss_dssp EEEETTTC----CEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEE-------CTTSEEEEEETTTCCEEEEE
T ss_pred EEEecCCC----cEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEe-------CCCcEEEEEECCCCCEEeee
Confidence 89999988 555444421 1 111 12223452 4556 88999999999999988766
Q ss_pred ecCC-------------CcE--------------------------EEEEEc--CCeEEEEe------------------
Q 041206 253 KGHS-------------DTV--------------------------TSLLFW--DEYLFSSS------------------ 273 (371)
Q Consensus 253 ~~~~-------------~~v--------------------------~~~~~~--~~~l~s~~------------------ 273 (371)
+... .++ ..++++ ..+++..+
T Consensus 343 ~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~ 422 (571)
T 2ad6_A 343 KVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQ 422 (571)
T ss_dssp ESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTS
T ss_pred cccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCC
Confidence 5321 111 123444 23443332
Q ss_pred -------------------CCCcEEEEEccCCCCcceec---ceE-EEEecCCCCEEEEecCCCeEEEEEcCCcceeeee
Q 041206 274 -------------------LDETIKIWLYTHTKNNAELS---SLF-GMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARI 330 (371)
Q Consensus 274 -------------------~dg~i~iwd~~~~~~~~~~~---~~~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 330 (371)
.++.|..||+.+.+..-... ... ......++ +++.++.|+.|+.||.++++++.++
T Consensus 423 ~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg-~v~~g~~dg~l~a~D~~tG~~lw~~ 501 (571)
T 2ad6_A 423 FFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGG-LVWYATLDGYLKALDNKDGKELWNF 501 (571)
T ss_dssp CCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCC-EEEEEcCCCeEEEEECCCCCEEEEE
Confidence 34788888887665321110 000 11122334 7778999999999999999999888
Q ss_pred cCCceE--EEEEeCCCC
Q 041206 331 FSRREV--EVDQIGPAG 345 (371)
Q Consensus 331 ~~~~~v--~~~~~s~~~ 345 (371)
.....+ .-+.+..+|
T Consensus 502 ~~~~~~~~~p~~~~~~G 518 (571)
T 2ad6_A 502 KMPSGGIGSPMTYSFKG 518 (571)
T ss_dssp ECSSCCCSCCEEEEETT
T ss_pred eCCCCcEeeeEEEEECC
Confidence 743322 123345677
No 259
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.45 E-value=5e-05 Score=67.00 Aligned_cols=185 Identities=16% Similarity=0.070 Sum_probs=112.8
Q ss_pred EEEEEeCCCeEEEEeccCCCCcceeeEEEe-------cCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceE
Q 041206 177 LLFAGSEGGVISVWKGTFVANPFKQVASIR-------APL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLEC 248 (371)
Q Consensus 177 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-------~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~ 248 (371)
+++.+-.++.|.++|+.+.....+....++ ... .-..+...|++.++++...- .+...+.+.++|.++++.
T Consensus 98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~-~g~~~g~v~vlD~~T~~v 176 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNE-EGEGPGGILMLDHYSFEP 176 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEET-TSCSCCEEEEECTTTCCE
T ss_pred EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCc-CCCCCCeEEEEECCCCeE
Confidence 566677789999999976654446666663 111 45567888999544440000 012237899999999999
Q ss_pred EEEeecCCC---cEEEEEEc--CCeEEEEe-------------------CCCcEEEEEccCCCCcceec---------ce
Q 041206 249 VQTLKGHSD---TVTSLLFW--DEYLFSSS-------------------LDETIKIWLYTHTKNNAELS---------SL 295 (371)
Q Consensus 249 ~~~~~~~~~---~v~~~~~~--~~~l~s~~-------------------~dg~i~iwd~~~~~~~~~~~---------~~ 295 (371)
+.++..... .-..+.|+ .+.+++.. .+.+|.+||+...+....+. .+
T Consensus 177 ~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i 256 (462)
T 2ece_A 177 LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALEL 256 (462)
T ss_dssp EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEE
T ss_pred EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCcccee
Confidence 988873222 22346666 56777764 37899999998654322221 11
Q ss_pred EEEEecCCCCEEEEec------CCCeEEEEEcCCcce--eeee--cC-----------------CceEEEEEeCCCC--e
Q 041206 296 FGMLDAEAKPVLFSSG------KDSAIRLYELPSFKL--RARI--FS-----------------RREVEVDQIGPAG--L 346 (371)
Q Consensus 296 ~~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~--~~~~--~~-----------------~~~v~~~~~s~~~--~ 346 (371)
... +.++++++++++ .+++|.+|....++. ...+ .. ......+.+|||| +
T Consensus 257 ~f~-~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfL 335 (462)
T 2ece_A 257 RPL-HDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFL 335 (462)
T ss_dssp EEC-SSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEE
T ss_pred Eee-ECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEE
Confidence 111 244444655554 567887766544321 1110 00 2446889999999 5
Q ss_pred EEeeCCCCcEEEEEccc
Q 041206 347 FFPGDASGSVGVWKWLL 363 (371)
Q Consensus 347 l~~~~~dg~i~iw~~~~ 363 (371)
.++.-..+.|.+||+..
T Consensus 336 YVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 336 YLSLWGIGEVRQYDISN 352 (462)
T ss_dssp EEEETTTTEEEEEECSS
T ss_pred EEEeCCCCEEEEEEecC
Confidence 55555688999999863
No 260
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.44 E-value=0.0002 Score=65.52 Aligned_cols=245 Identities=10% Similarity=0.027 Sum_probs=144.4
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEe----ecCCEEEE-----------ecCC--cEEEEEeCCCCeeEEEE
Q 041206 111 LYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLI----SEGSWVFL-----------GLPN--AVKSWRVNAASVNALVV 173 (371)
Q Consensus 111 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-----------~~~~--~i~~~~~~~~~v~~~~~ 173 (371)
+.||+..|.++++-+.+++.+..++.-.+....- .+.+.++. ...+ .+..=|.| -..+++
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~h---h~~~s~ 94 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLH---HVHMSF 94 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBC---CEEEEE
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCC---ccccCC
Confidence 7789999999999999999988876421100000 00000000 0001 11111111 133444
Q ss_pred -----eCCEEEEEe-CCCeEEEEeccCCCCcceeeEEEecCc--ceEEEEe-c-CCce-eEecccc----------e-ee
Q 041206 174 -----NNDLLFAGS-EGGVISVWKGTFVANPFKQVASIRAPL--WFCSLSS-S-NDTR-WNSKEEA----------A-VF 231 (371)
Q Consensus 174 -----~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~-~-~~~~-l~~~~~~----------~-~~ 231 (371)
+..++++.. .++.|.+.|+.+. +....+.-.. ....+++ . |++. +++++.. + ..
T Consensus 95 t~g~~DG~~lfVnd~~~~rVavIdl~t~----~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~ 170 (595)
T 1fwx_A 95 TEGKYDGRFLFMNDKANTRVARVRCDVM----KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 170 (595)
T ss_dssp ETTEEEEEEEEEEETTTTEEEEEETTTT----EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred CCCCcCCCEEEEEcCCCCEEEEEECCCc----eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccc
Confidence 223555544 4668999999998 7666554332 6777787 4 7775 4444100 0 00
Q ss_pred eeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCCC---------------------------------
Q 041206 232 EFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDE--------------------------------- 276 (371)
Q Consensus 232 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg--------------------------------- 276 (371)
.-.++.+.+.|..+.+.+.++.--. .-..++++ ++++++.+.+.
T Consensus 171 ~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk 249 (595)
T 1fwx_A 171 ANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 249 (595)
T ss_dssp GGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred cccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCC
Confidence 1235689999999999888776322 22334444 66777666443
Q ss_pred -----cEEEEEccC--CCC-ccee----cceEEEEecCCCCEEEEecCCCeEEEEEcCCcc------------eeeeecC
Q 041206 277 -----TIKIWLYTH--TKN-NAEL----SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFK------------LRARIFS 332 (371)
Q Consensus 277 -----~i~iwd~~~--~~~-~~~~----~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------------~~~~~~~ 332 (371)
.|.+.|.+. ... ...+ ......+++++...++++..+.+|.++|+.+.+ ...++..
T Consensus 250 ~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v 329 (595)
T 1fwx_A 250 YQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 329 (595)
T ss_dssp SEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred eeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence 355555554 111 0111 111223555555456666688999999999763 3445545
Q ss_pred CceEEEEEeCCCC-eEEeeCCCCcEEEEEccc
Q 041206 333 RREVEVDQIGPAG-LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 333 ~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~ 363 (371)
......++|+|+| ..++.--|+.|.+|++..
T Consensus 330 G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 330 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 6678999999999 777788899999999987
No 261
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.36 E-value=0.00087 Score=56.92 Aligned_cols=222 Identities=7% Similarity=-0.001 Sum_probs=123.0
Q ss_pred CceeeEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeC
Q 041206 85 SLATLMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVN 164 (371)
Q Consensus 85 ~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 164 (371)
..+.+..+... .....++|+++++++++-..++.|..||... +....+....
T Consensus 21 ~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~-------------------------- 72 (306)
T 2p4o_A 21 PAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEG-------------------------- 72 (306)
T ss_dssp CEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSS--------------------------
T ss_pred CceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCC--------------------------
Confidence 34556666543 5678999999998777776788999998764 3333333222
Q ss_pred CCCeeEEEEeCC-EEEEEe--CCC-eEEEEeccCCCCcceeeEEEecCcceEEEEecCCceeEecccceeeeeCCCeEEE
Q 041206 165 AASVNALVVNND-LLFAGS--EGG-VISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRT 240 (371)
Q Consensus 165 ~~~v~~~~~~~~-~l~~~~--~dg-~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~i 240 (371)
....++++++ .++++. .++ .|..+|..++. ...+..+........++..+++.++.. ...++.|+.
T Consensus 73 --~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~--~~~~~~~~~~~~~~g~~~~~~~~~~v~------d~~~g~i~~ 142 (306)
T 2p4o_A 73 --KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT--VETLLTLPDAIFLNGITPLSDTQYLTA------DSYRGAIWL 142 (306)
T ss_dssp --EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC--EEEEEECTTCSCEEEEEESSSSEEEEE------ETTTTEEEE
T ss_pred --CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe--EEEEEeCCCccccCcccccCCCcEEEE------ECCCCeEEE
Confidence 3677788776 333333 222 46666666551 111111111113345555565654433 045889999
Q ss_pred EECCCceE-EEEee---------cCCCcEEEEEEcCCeE-EEEeCCCcEEEEEccCCCC---ccee---cceEEEEecCC
Q 041206 241 WNLDNLEC-VQTLK---------GHSDTVTSLLFWDEYL-FSSSLDETIKIWLYTHTKN---NAEL---SSLFGMLDAEA 303 (371)
Q Consensus 241 wd~~~~~~-~~~~~---------~~~~~v~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~---~~~~---~~~~~~~~~~~ 303 (371)
+|..+++. +.... ..-.....+...+++| ++-...+.|..|++..... ...+ .....+...++
T Consensus 143 ~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~d 222 (306)
T 2p4o_A 143 IDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVE 222 (306)
T ss_dssp EETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTT
T ss_pred EeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCC
Confidence 99876532 21111 1112344554445544 5555678899999864211 1111 01112233334
Q ss_pred CCEEEEecCCCeEEEEEcCCccee--eeecC-CceEEEEEeC---CCC
Q 041206 304 KPVLFSSGKDSAIRLYELPSFKLR--ARIFS-RREVEVDQIG---PAG 345 (371)
Q Consensus 304 ~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~-~~~v~~~~~s---~~~ 345 (371)
+++.++....+.|.++|.. ++.. ..+.. ....++++|. |++
T Consensus 223 G~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~ 269 (306)
T 2p4o_A 223 GNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDC 269 (306)
T ss_dssp CCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTT
T ss_pred CCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCC
Confidence 5566666667889999976 4442 22322 3568999998 886
No 262
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.26 E-value=0.00022 Score=67.66 Aligned_cols=231 Identities=11% Similarity=0.104 Sum_probs=120.1
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------cEEEEECCCCceEEE--EeCCCeeEEEeecCCEEEEecCCcEEEEEeCCC
Q 041206 101 NVGLPS-GSNKLYSGSRDG-----------RVSVWDRDSGRCVNV--ITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAA 166 (371)
Q Consensus 101 ~~~~~~-~~~~l~s~~~dg-----------~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 166 (371)
.+++.+ ++++++.|+.+. .+.+||..+++.... +... +..
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~--------------------------~~~ 243 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK--------------------------HDM 243 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS--------------------------CCC
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCC--------------------------CCC
Confidence 556667 888888887543 578888887753221 1110 011
Q ss_pred CeeEEEEeCC--EEEEEe-CCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eEecccceeeee-CC-----C
Q 041206 167 SVNALVVNND--LLFAGS-EGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEF-CG-----H 236 (371)
Q Consensus 167 ~v~~~~~~~~--~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~-~d-----g 236 (371)
...+.++..+ .++.|+ .+..+.+||..+.. +..+..+.....-.+++..++++ ++.| + .+ .
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~--W~~~~~~~~~R~~~s~~~~~dg~iyv~G-------G~~~~~~~~~ 314 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS--WIPGPDMQVARGYQSSATMSDGRVFTIG-------GSWSGGVFEK 314 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE--EEECCCCSSCCSSCEEEECTTSCEEEEC-------CCCCSSSCCC
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCcCCc--eeECCCCCccccccceEEecCCeEEEEe-------CcccCCcccc
Confidence 1223444333 666666 34579999988762 12222222111223455566776 5666 5 33 5
Q ss_pred eEEEEECCCceEEEEe----ec-CCCcEEEEE-EcCCeEEEEeCC---------CcEEEEEccCCCCcc-----------
Q 041206 237 TTRTWNLDNLECVQTL----KG-HSDTVTSLL-FWDEYLFSSSLD---------ETIKIWLYTHTKNNA----------- 290 (371)
Q Consensus 237 ~i~iwd~~~~~~~~~~----~~-~~~~v~~~~-~~~~~l~s~~~d---------g~i~iwd~~~~~~~~----------- 290 (371)
.+.+||..+++....- .. ....-.++. ..+..++.++.+ ..+..||.....-..
T Consensus 315 ~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~ 394 (656)
T 1k3i_A 315 NGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGV 394 (656)
T ss_dssp CEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEE
T ss_pred cceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcccccccc
Confidence 7899999887643320 00 000000010 113334444444 356778866543110
Q ss_pred ---eecceEEEEecCCCCEEEEecCCC-----------eEEEEEcCCcceeee----ecCCceEEEEEeCCCC-eEEeeC
Q 041206 291 ---ELSSLFGMLDAEAKPVLFSSGKDS-----------AIRLYELPSFKLRAR----IFSRREVEVDQIGPAG-LFFPGD 351 (371)
Q Consensus 291 ---~~~~~~~~~~~~~~~~l~~~~~d~-----------~i~iwd~~~~~~~~~----~~~~~~v~~~~~s~~~-~l~~~~ 351 (371)
.......++...++++++.|+.++ .|.+||..+..-... +.....-.++...|++ +++.|+
T Consensus 395 ~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG 474 (656)
T 1k3i_A 395 APDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGG 474 (656)
T ss_dssp CCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECC
T ss_pred CCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECC
Confidence 011112122233555778887532 688888877553322 1222222345667888 777777
Q ss_pred CC-----------CcEEEEEccccce
Q 041206 352 AS-----------GSVGVWKWLLAEQ 366 (371)
Q Consensus 352 ~d-----------g~i~iw~~~~~~~ 366 (371)
.+ ..+.+||..+.+-
T Consensus 475 ~~~~~~~~~~~~~~~v~~ydp~t~~W 500 (656)
T 1k3i_A 475 QRRGIPFEDSTPVFTPEIYVPEQDTF 500 (656)
T ss_dssp BSBCCTTCCCSBCCCCEEEEGGGTEE
T ss_pred cccCcCcCCCCcccceEEEcCCCCce
Confidence 54 4689999877653
No 263
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.22 E-value=0.0022 Score=55.96 Aligned_cols=227 Identities=11% Similarity=0.024 Sum_probs=139.6
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEE-eCCEEEE
Q 041206 102 VGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVV-NNDLLFA 180 (371)
Q Consensus 102 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~-~~~~l~~ 180 (371)
.-.+|..+.+|--. ..++.|+|+++.+.++.+...++ |.--.| +++.|+.
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~----------------------------VvfWkWis~~~l~l 121 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD----------------------------VTFWKWISLNTVAL 121 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSC----------------------------CCEEEEEETTEEEE
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCC----------------------------ceEEEecCCCeEEE
Confidence 44577777777665 67888888888888887775444 333334 3444444
Q ss_pred EeCCCeEEEEeccCCCCcceeeEEEecCc-----ceEEEEecCCce--eEecccceeeeeCCCeEEEEECCCceEEEEee
Q 041206 181 GSEGGVISVWKGTFVANPFKQVASIRAPL-----WFCSLSSSNDTR--WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLK 253 (371)
Q Consensus 181 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~ 253 (371)
.+ +..|+-|++.... .+.+.+..|. .|..-..+++.+ +++|- .---+.-.|.+.+|..+.+ .-+.++
T Consensus 122 VT-~taVyHWsi~~~s---~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI-~~~~~~v~G~mQLYS~er~-~sQ~ie 195 (494)
T 1bpo_A 122 VT-DNAVYHWSMEGES---QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI-SAQQNRVVGAMQLYSVDRK-VSQPIE 195 (494)
T ss_dssp EC-SSEEEEEESSSSC---CCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEE-EEETTEEEEEEEEEESTTC-CEEEEC
T ss_pred Ec-CCeeEEecccCCC---CchhheecchhcccceEEEEEECCCCCeEEEEee-cccCCcccceEEEeecccc-ccchhe
Confidence 43 4679999987643 4555666553 677888888887 34440 0000023478899998854 456788
Q ss_pred cCCCcEEEEEEcCC-----eEEEEeC---CCcEEEEEccCCC-Cccee----------------cceEEEEecCCCCEEE
Q 041206 254 GHSDTVTSLLFWDE-----YLFSSSL---DETIKIWLYTHTK-NNAEL----------------SSLFGMLDAEAKPVLF 308 (371)
Q Consensus 254 ~~~~~v~~~~~~~~-----~l~s~~~---dg~i~iwd~~~~~-~~~~~----------------~~~~~~~~~~~~~~l~ 308 (371)
+|.+....+...++ .++-+.. .+++.+-++.... ....+ -.+....++..+ +++
T Consensus 196 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg-viy 274 (494)
T 1bpo_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVF 274 (494)
T ss_dssp CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT-EEE
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC-EEE
Confidence 88776666655532 3333333 2789999986541 11111 022222344444 788
Q ss_pred EecCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccc
Q 041206 309 SSGKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 309 ~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
.-..-|.|++||+.++.++..-. ...+|...+-+... =++.....|.|.--.+...
T Consensus 275 viTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 275 LITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred EEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 88899999999999999887655 45555555544433 4444447777665555543
No 264
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.22 E-value=0.00027 Score=68.14 Aligned_cols=188 Identities=7% Similarity=-0.025 Sum_probs=101.9
Q ss_pred CeEEEEEc-CCCCEEEEEe-CCC----cEEEEECCCC-ceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeE
Q 041206 98 AVTNVGLP-SGSNKLYSGS-RDG----RVSVWDRDSG-RCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNA 170 (371)
Q Consensus 98 ~V~~~~~~-~~~~~l~s~~-~dg----~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~ 170 (371)
.+...+|| |||++||-+. .+| +|+++|+.++ +.+.. .+.. ....
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-----~~~~------------------------~~~~ 225 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-----KVSG------------------------TNGE 225 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-----CEEE------------------------ECSC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-----cccC------------------------ceee
Confidence 67889999 9999887543 233 5999999988 63210 0000 0234
Q ss_pred EEEeCC--EEEEEeCC-----CeEEEEeccCCCCcceeeEEEec-Cc-ceEEEEecCCce-eEecccceeeeeCCCeEEE
Q 041206 171 LVVNND--LLFAGSEG-----GVISVWKGTFVANPFKQVASIRA-PL-WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRT 240 (371)
Q Consensus 171 ~~~~~~--~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~-~~-~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~i 240 (371)
++|+|+ .|+....+ ..|+.+++.++.. +....+.. .. ....+.|+||++ |+... .......|++
T Consensus 226 ~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~--~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~----~~~~~~~l~~ 299 (751)
T 2xe4_A 226 IVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQS--EDVCLYEEHNPLFSAFMYKAADTNTLCIGS----QSPETAEVHL 299 (751)
T ss_dssp CEECSSTTEEEEEEECTTCCEEEEEEEETTSCGG--GCEEEEECCCTTCEEEEEECTTSSEEEEEE----ECSSCEEEEE
T ss_pred EEEecCCCEEEEEEECCCCCCCEEEEEECCCCch--hcEEEEecCCCceEEEEEECCCCCEEEEEe----cCCCCceEEE
Confidence 667776 44444433 3577788876521 11222222 22 566889999996 44330 0023557889
Q ss_pred EECCCc--eE--EEEeecCCCcEEEEEEc-CCeEEEE-eCC--C--cEEEEEccCCCC-cc-eec-----ceEEEEecCC
Q 041206 241 WNLDNL--EC--VQTLKGHSDTVTSLLFW-DEYLFSS-SLD--E--TIKIWLYTHTKN-NA-ELS-----SLFGMLDAEA 303 (371)
Q Consensus 241 wd~~~~--~~--~~~~~~~~~~v~~~~~~-~~~l~s~-~~d--g--~i~iwd~~~~~~-~~-~~~-----~~~~~~~~~~ 303 (371)
+|+.++ +. ............++.|+ ++.|+.. ..+ + .|..+++..... .. .+. .+.. +...+
T Consensus 300 ~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~-~~~~~ 378 (751)
T 2xe4_A 300 LDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMES-IAVRS 378 (751)
T ss_dssp EESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEE-EEECS
T ss_pred EECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEE-EEEEC
Confidence 999875 23 22333445566777755 5555443 333 2 566666653211 11 110 1222 22234
Q ss_pred CCEEEEecCCCe--EEEEEc
Q 041206 304 KPVLFSSGKDSA--IRLYEL 321 (371)
Q Consensus 304 ~~~l~~~~~d~~--i~iwd~ 321 (371)
+.++++...++. |.++++
T Consensus 379 ~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 379 NYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp SEEEEEEEETTEEEEEEEEC
T ss_pred CEEEEEEEeCCEEEEEEEec
Confidence 446667777775 455565
No 265
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.19 E-value=0.00011 Score=67.20 Aligned_cols=129 Identities=5% Similarity=-0.086 Sum_probs=75.3
Q ss_pred eEEEEECCC--ceE-EEEeecCCCcEEEEEEc--CCeEEEE-eCCCcEEEEEccCCC---------------Ccceecce
Q 041206 237 TTRTWNLDN--LEC-VQTLKGHSDTVTSLLFW--DEYLFSS-SLDETIKIWLYTHTK---------------NNAELSSL 295 (371)
Q Consensus 237 ~i~iwd~~~--~~~-~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~i~iwd~~~~~---------------~~~~~~~~ 295 (371)
.|.+.|.++ ++. +..+.. .....++.++ +++++.+ -.+.+|.++|+...+ ....-..-
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP 333 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP 333 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE
T ss_pred cEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc
Confidence 488889887 444 445543 2244577787 5655544 478899999988542 00000122
Q ss_pred EEEEecCCCCEEEEecCCCeEEEEEcCC----------cceeeeecCCceE------EEEEeCCCC-eEEeeC---CCCc
Q 041206 296 FGMLDAEAKPVLFSSGKDSAIRLYELPS----------FKLRARIFSRREV------EVDQIGPAG-LFFPGD---ASGS 355 (371)
Q Consensus 296 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~----------~~~~~~~~~~~~v------~~~~~s~~~-~l~~~~---~dg~ 355 (371)
....+.+++...++...|+.|.+||+.. .+.+.++...... ..+.++||| +|++.. .|+.
T Consensus 334 ~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~ 413 (595)
T 1fwx_A 334 LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRF 413 (595)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSS
T ss_pred ceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccc
Confidence 2334444445566778899999999977 3344444422222 123568999 666554 2432
Q ss_pred E----------EEEEccccce
Q 041206 356 V----------GVWKWLLAEQ 366 (371)
Q Consensus 356 i----------~iw~~~~~~~ 366 (371)
+ .++|+..++.
T Consensus 414 ~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 414 LNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp CCCCSSCCEEEEEEECSSSSC
T ss_pred ccCCCCCCCcceEEEcCCCcE
Confidence 1 7888865543
No 266
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.18 E-value=0.002 Score=57.50 Aligned_cols=226 Identities=8% Similarity=0.044 Sum_probs=127.0
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC
Q 041206 98 AVTNVGLPS-GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND 176 (371)
Q Consensus 98 ~V~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~ 176 (371)
....++++| ++..|+.+...+.|+.+|..++........ ......++++++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~----------------------------~~~P~~ia~d~~ 189 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSG----------------------------LSKVRTICWTHE 189 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECC----------------------------CSCEEEEEECTT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecC----------------------------CCCcceEEEeCC
Confidence 457888998 455666666557888888876654433321 123677888776
Q ss_pred --EEEEEeCC-C----eEEEEeccCCCCcceeeEEEecCcceEEEEecC-CceeE-ecccceeeeeCCCeEEEEECCCce
Q 041206 177 --LLFAGSEG-G----VISVWKGTFVANPFKQVASIRAPLWFCSLSSSN-DTRWN-SKEEAAVFEFCGHTTRTWNLDNLE 247 (371)
Q Consensus 177 --~l~~~~~d-g----~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~-~~~~~~~~~~~dg~i~iwd~~~~~ 247 (371)
.|+++... + .+.+++..... .....+........++++| ++.++ +- ...+.|+.++..++.
T Consensus 190 G~~lyvad~~~~~~~~~v~~~~~~g~~---~~~~~l~~~~~p~giavdp~~g~lyv~d-------~~~~~V~~~~~~~~~ 259 (430)
T 3tc9_A 190 ADSMIITNDQNNNDRPNNYILTRESGF---KVITELTKGQNCNGAETHPINGELYFNS-------WNAGQVFRYDFTTQE 259 (430)
T ss_dssp SSEEEEEECCSCTTSEEEEEEEGGGTS---CSEEEEEECSSCCCEEECTTTCCEEEEE-------TTTTEEEEEETTTTE
T ss_pred CCEEEEEeCCCCcccceEEEEeCCCce---eeeeeeccCCCceEEEEeCCCCEEEEEE-------CCCCEEEEEECCCCc
Confidence 45555542 1 34344433321 1112232223567788999 67754 44 467899999998766
Q ss_pred EEEEeec-CCCcEEEEEEc--CC-eEEEEeCCCcEEEEEccCCCC------------------c-----ceecceE-EEE
Q 041206 248 CVQTLKG-HSDTVTSLLFW--DE-YLFSSSLDETIKIWLYTHTKN------------------N-----AELSSLF-GML 299 (371)
Q Consensus 248 ~~~~~~~-~~~~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~------------------~-----~~~~~~~-~~~ 299 (371)
....... .......++++ ++ ++++-...+.|..++...... . ..+..-. .++
T Consensus 260 ~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~ 339 (430)
T 3tc9_A 260 TTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTF 339 (430)
T ss_dssp EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEE
T ss_pred EEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEE
Confidence 5322221 12346788998 56 445555678899988653210 0 0011111 222
Q ss_pred ec--------CCCCEEEEecCCCeEEEEEcCCcceeeeecC---------C---------ceEEEEEeCC-CC-eEEeeC
Q 041206 300 DA--------EAKPVLFSSGKDSAIRLYELPSFKLRARIFS---------R---------REVEVDQIGP-AG-LFFPGD 351 (371)
Q Consensus 300 ~~--------~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---------~---------~~v~~~~~s~-~~-~l~~~~ 351 (371)
.. +.+.+.++=..++.|+.++. +++....... . .....++++| ++ ++++-.
T Consensus 340 v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~ 418 (430)
T 3tc9_A 340 VKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDR 418 (430)
T ss_dssp EECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG
T ss_pred EccccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEEC
Confidence 21 22334455456678888884 3432222111 1 1478999998 46 666666
Q ss_pred CCCcEEEEEcc
Q 041206 352 ASGSVGVWKWL 362 (371)
Q Consensus 352 ~dg~i~iw~~~ 362 (371)
.+..|+.++++
T Consensus 419 ~n~rIr~i~~e 429 (430)
T 3tc9_A 419 ENRRIRKIGYE 429 (430)
T ss_dssp GGTEEEEEEEC
T ss_pred CCCeEEEEccC
Confidence 67788877754
No 267
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.14 E-value=0.0021 Score=54.46 Aligned_cols=183 Identities=11% Similarity=-0.022 Sum_probs=108.3
Q ss_pred CeeEEEEeCC--EEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCceeEecccceeeee--CCC-eEEEE
Q 041206 167 SVNALVVNND--LLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEF--CGH-TTRTW 241 (371)
Q Consensus 167 ~v~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~--~dg-~i~iw 241 (371)
....++++++ ++++-..++.|..||.... ....+........+++.++++++.+ . .++ .|..+
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-----~~~~~~~~~~p~gia~~~dG~l~va-------d~~~~~~~v~~~ 100 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDGN-----QQIHATVEGKVSGLAFTSNGDLVAT-------GWNADSIPVVSL 100 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC-----EEEEEECSSEEEEEEECTTSCEEEE-------EECTTSCEEEEE
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCCc-----eEEEEeCCCCceeEEEcCCCcEEEE-------eccCCcceEEEE
Confidence 3677888877 4444447789999987653 2223333237889999999986555 4 222 57778
Q ss_pred ECCCceEEEEeec-CCCcEEEEEEc-CCe-EEEEeCCCcEEEEEccCCC--------------CcceecceEEEEecCCC
Q 041206 242 NLDNLECVQTLKG-HSDTVTSLLFW-DEY-LFSSSLDETIKIWLYTHTK--------------NNAELSSLFGMLDAEAK 304 (371)
Q Consensus 242 d~~~~~~~~~~~~-~~~~v~~~~~~-~~~-l~s~~~dg~i~iwd~~~~~--------------~~~~~~~~~~~~~~~~~ 304 (371)
|..+++....... .......++.. +.. +++-..++.|..+|..... ....+.....+ .++++
T Consensus 101 d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi-s~dg~ 179 (306)
T 2p4o_A 101 VKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL-KRFGN 179 (306)
T ss_dssp ECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-EEETT
T ss_pred cCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-CcCCC
Confidence 8777765433221 12223444433 444 4444457888888865321 01111223334 45555
Q ss_pred CEEEEecCCCeEEEEEcCC-cce--eeeecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEcc
Q 041206 305 PVLFSSGKDSAIRLYELPS-FKL--RARIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWL 362 (371)
Q Consensus 305 ~~l~~~~~d~~i~iwd~~~-~~~--~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~ 362 (371)
.++++-...+.|..|++.. ++. ...+........++++++| ++++....+.|.+++..
T Consensus 180 ~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 180 FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp EEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred EEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 4556667788999999875 321 1111112345678899999 66666667889998865
No 268
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.08 E-value=0.0028 Score=51.87 Aligned_cols=179 Identities=10% Similarity=0.076 Sum_probs=113.7
Q ss_pred CeeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecC--cceEEEEecCCcee-EecccceeeeeCCCeEEE
Q 041206 167 SVNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAP--LWFCSLSSSNDTRW-NSKEEAAVFEFCGHTTRT 240 (371)
Q Consensus 167 ~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~l-~~~~~~~~~~~~dg~i~i 240 (371)
.+..++++|+ ++++...++.|...|.. + +.+..+.-. .....+++.+++.+ ++. -.++.+.+
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g----~v~~~i~l~g~~D~EGIa~~~~g~~~vs~-------E~~~~l~~ 95 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN-G----DLIRTIPLDFVKDLETIEYIGDNQFVISD-------ERDYAIYV 95 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETTEEEEEEETT-C----CEEEEEECSSCSSEEEEEECSTTEEEEEE-------TTTTEEEE
T ss_pred CcceeEEeCCCCEEEEEECCCCeEEEEeCC-C----CEEEEEecCCCCChHHeEEeCCCEEEEEE-------CCCCcEEE
Confidence 5889999976 55567778899999988 5 566665433 27788888888875 444 45678888
Q ss_pred EECCCceE---EEEee------cCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC-----------------ccee
Q 041206 241 WNLDNLEC---VQTLK------GHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN-----------------NAEL 292 (371)
Q Consensus 241 wd~~~~~~---~~~~~------~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~-----------------~~~~ 292 (371)
+++..... +.... ........++|+ ++.|+++.......+|.+..... ....
T Consensus 96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence 88765332 22221 123456899998 45677777665556666541100 1111
Q ss_pred cceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeecCC----------ceEEEEEeCCCCeEEeeCCCCcEEEEE
Q 041206 293 SSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIFSR----------REVEVDQIGPAGLFFPGDASGSVGVWK 360 (371)
Q Consensus 293 ~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----------~~v~~~~~s~~~~l~~~~~dg~i~iw~ 360 (371)
+.+. +.+..+.+++.....+.+.++|... +.+..+.-. .....|+|.|+|.|...++-..+++|.
T Consensus 176 S~l~--~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 176 SGAE--FNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFT 250 (255)
T ss_dssp CEEE--EETTTTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEE
T ss_pred eeEE--EcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEE
Confidence 2232 5566666778888889999999775 444443311 366899999999333335555555554
No 269
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.06 E-value=0.001 Score=62.00 Aligned_cols=196 Identities=7% Similarity=-0.043 Sum_probs=111.3
Q ss_pred CCEEEEEeC-CCcEEEEEC-CCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEE--eCCE----EE
Q 041206 108 SNKLYSGSR-DGRVSVWDR-DSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVV--NNDL----LF 179 (371)
Q Consensus 108 ~~~l~s~~~-dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~--~~~~----l~ 179 (371)
+..|+.++. ++.|.-+|. .+|+.+.++.......... ..++ ......+++ ..+. ++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~----~~~~------------~~~~~g~av~p~~g~~~~rV~ 125 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARA----VACC------------DLVNRGLAYWPGDGKTPALIL 125 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGG----GCSS------------CSCCCCCEEECCCSSSCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccc----cccc------------cccccceEEEecCCcceeEEE
Confidence 456777777 899999999 9999998877543210000 0000 000112233 2223 88
Q ss_pred EEeCCCeEEEEeccCCCCcceeeEEEecCc-----ceEE-EEecCCceeEecccceeeee------CCCeEEEEECCCce
Q 041206 180 AGSEGGVISVWKGTFVANPFKQVASIRAPL-----WFCS-LSSSNDTRWNSKEEAAVFEF------CGHTTRTWNLDNLE 247 (371)
Q Consensus 180 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-----~v~~-~~~~~~~~l~~~~~~~~~~~------~dg~i~iwd~~~~~ 247 (371)
+++.|+.|..+|..++ +.+-...... .+.+ ..+ .+++++++ + .++.|+.+|.++++
T Consensus 126 v~t~dg~l~AlDa~TG----~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg-------~~g~e~g~~g~v~A~D~~TG~ 193 (599)
T 1w6s_A 126 KTQLDGNVAALNAETG----ETVWKVENSDIKVGSTLTIAPYV-VKDKVIIG-------SSGAELGVRGYLTAYDVKTGE 193 (599)
T ss_dssp EECTTSEEEEEETTTC----CEEEEEECCCGGGTCBCCSCCEE-ETTEEEEC-------CBCGGGTCCCEEEEEETTTCC
T ss_pred EEcCCCEEEEEECCCC----CEEEeecCCCCCccceeecCCEE-ECCEEEEE-------ecccccCCCCeEEEEECCCCc
Confidence 8888999999999988 4443333211 1111 011 14565555 4 38999999999999
Q ss_pred EEEEeecCCCc-------------------------------------E-EEEEEc--CCeEEEEeCC------------
Q 041206 248 CVQTLKGHSDT-------------------------------------V-TSLLFW--DEYLFSSSLD------------ 275 (371)
Q Consensus 248 ~~~~~~~~~~~-------------------------------------v-~~~~~~--~~~l~s~~~d------------ 275 (371)
.+.++...... + ..+++. .++++.+..+
T Consensus 194 ~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd 273 (599)
T 1w6s_A 194 QVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGD 273 (599)
T ss_dssp EEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSC
T ss_pred EEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCC
Confidence 98776532211 0 022333 4455555544
Q ss_pred ----CcEEEEEccCCCCccee--------------cceEEEEe-cCCC--CEEEEecCCCeEEEEEcCCcceeeeec
Q 041206 276 ----ETIKIWLYTHTKNNAEL--------------SSLFGMLD-AEAK--PVLFSSGKDSAIRLYELPSFKLRARIF 331 (371)
Q Consensus 276 ----g~i~iwd~~~~~~~~~~--------------~~~~~~~~-~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~ 331 (371)
+.|..+|.++.+..-.. ..+..-.. .++. ..++.++.+|.++++|..+++++....
T Consensus 274 ~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 274 NKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp CTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 36777776655421110 11111011 2232 467788999999999999999877654
No 270
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.94 E-value=0.0097 Score=53.15 Aligned_cols=226 Identities=6% Similarity=-0.066 Sum_probs=125.4
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeC
Q 041206 98 AVTNVGLPSG--SNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNN 175 (371)
Q Consensus 98 ~V~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~ 175 (371)
....++++|+ ...|+.+...+.|+.+|..+++........ .....+++++
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~----------------------------~~P~giavd~ 191 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNI----------------------------GQCADVNFTL 191 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCC----------------------------SCEEEEEECT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCC----------------------------CCccEEEECC
Confidence 4678899984 445555554488999998777655443311 1366777777
Q ss_pred C-EEEEEeCCC-----eEEEEeccCCCCcceeeEEEecCcceEEEEecC-CceeEecccceeeeeCCCeEEEEECCCceE
Q 041206 176 D-LLFAGSEGG-----VISVWKGTFVANPFKQVASIRAPLWFCSLSSSN-DTRWNSKEEAAVFEFCGHTTRTWNLDNLEC 248 (371)
Q Consensus 176 ~-~l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~ 248 (371)
+ .|+++...+ .+...+..... .....+........+++.| ++.|+.+. ..++.|+.+|..+++.
T Consensus 192 dG~lyVad~~~~~~~~gv~~~~~~~~~---~~~~~~~~~~~P~giavd~~~G~lyv~d------~~~~~V~~~d~~~g~~ 262 (433)
T 4hw6_A 192 NGDMVVVDDQSSDTNTGIYLFTRASGF---TERLSLCNARGAKTCAVHPQNGKIYYTR------YHHAMISSYDPATGTL 262 (433)
T ss_dssp TCCEEEEECCSCTTSEEEEEECGGGTT---CCEEEEEECSSBCCCEECTTTCCEEECB------TTCSEEEEECTTTCCE
T ss_pred CCCEEEEcCCCCcccceEEEEECCCCe---eccccccccCCCCEEEEeCCCCeEEEEE------CCCCEEEEEECCCCeE
Confidence 6 344443321 23333333221 1111222222566788898 67755440 4678899999987765
Q ss_pred EEEe-ec-CCCcEEEEEEc--CC-eEEEEeCCCcEEEEEccCCCC--------------c---------ceecceEEEEe
Q 041206 249 VQTL-KG-HSDTVTSLLFW--DE-YLFSSSLDETIKIWLYTHTKN--------------N---------AELSSLFGMLD 300 (371)
Q Consensus 249 ~~~~-~~-~~~~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~--------------~---------~~~~~~~~~~~ 300 (371)
...+ .. ....-..++++ ++ +.++-...+.|+.+++..... . ..+..-..+..
T Consensus 263 ~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav 342 (433)
T 4hw6_A 263 TEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIF 342 (433)
T ss_dssp EEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEE
T ss_pred EEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEE
Confidence 2222 21 12223468888 55 445555678899988642110 0 01111222333
Q ss_pred ---------cCCCCEEEEecCCCeEEEEEcCCcceeeeecC-------------------CceEEEEEeC-CCC-eEEee
Q 041206 301 ---------AEAKPVLFSSGKDSAIRLYELPSFKLRARIFS-------------------RREVEVDQIG-PAG-LFFPG 350 (371)
Q Consensus 301 ---------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------------------~~~v~~~~~s-~~~-~l~~~ 350 (371)
...+.+.++-..++.|+.++. ++... .+.. -.....|+++ ++| ++++-
T Consensus 343 ~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD 420 (433)
T 4hw6_A 343 VKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGD 420 (433)
T ss_dssp EECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEE
T ss_pred EccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEe
Confidence 445545666666788998885 34322 2211 1236789998 566 66666
Q ss_pred CCCCcEEEEEcc
Q 041206 351 DASGSVGVWKWL 362 (371)
Q Consensus 351 ~~dg~i~iw~~~ 362 (371)
..++.|+.++++
T Consensus 421 ~~n~rIr~i~~e 432 (433)
T 4hw6_A 421 CDNHRVRKIAPE 432 (433)
T ss_dssp GGGTEEEEEEEC
T ss_pred CCCCEEEEEecC
Confidence 667788877764
No 271
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.87 E-value=0.012 Score=51.77 Aligned_cols=186 Identities=11% Similarity=-0.001 Sum_probs=108.8
Q ss_pred CeeEEEEeCC--EE-EEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCC-cee-EecccceeeeeCCCeEEE
Q 041206 167 SVNALVVNND--LL-FAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSND-TRW-NSKEEAAVFEFCGHTTRT 240 (371)
Q Consensus 167 ~v~~~~~~~~--~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~-~~l-~~~~~~~~~~~~dg~i~i 240 (371)
.+..++|++. .| ++-...+.|..+++... .....+.... ....+++.+. +.| ++- ...+.|.+
T Consensus 117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~----~~~~~~~~~~~~p~glavd~~~g~lY~~d-------~~~~~I~~ 185 (386)
T 3v65_B 117 NAIALDFHHRRELVFWSDVTLDRILRANLNGS----NVEEVVSTGLESPGGLAVDWVHDKLYWTD-------SGTSRIEV 185 (386)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSC----CEEEEECSSCSCCCCEEEETTTTEEEEEE-------TTTTEEEE
T ss_pred ccEEEEEecCCCeEEEEeCCCCcEEEEecCCC----CcEEEEeCCCCCccEEEEEeCCCeEEEEc-------CCCCeEEE
Confidence 3678888864 44 44446788988988765 2222222222 5567888864 454 444 55678888
Q ss_pred EECCCceEEEEeecCCCcEEEEEEc--CCeE-EEEeCC-CcEEEEEccCCCCcce----ecceEEE-EecCCCCEEEEec
Q 041206 241 WNLDNLECVQTLKGHSDTVTSLLFW--DEYL-FSSSLD-ETIKIWLYTHTKNNAE----LSSLFGM-LDAEAKPVLFSSG 311 (371)
Q Consensus 241 wd~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~s~~~d-g~i~iwd~~~~~~~~~----~~~~~~~-~~~~~~~~l~~~~ 311 (371)
.++........+.........++++ +..| ++-... +.|..+++........ +..-..+ +.+.++.+.++-.
T Consensus 186 ~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~ 265 (386)
T 3v65_B 186 ANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA 265 (386)
T ss_dssp CBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET
T ss_pred EeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC
Confidence 8887544333333334566888887 3444 444344 6788877654332111 1112333 4445665666666
Q ss_pred CCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccc
Q 041206 312 KDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 312 ~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
..+.|..+|+........+. .......+++ ..+ ++++-...+.|..++..++
T Consensus 266 ~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 266 KHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp TTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred CCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence 77889999987533222222 2345678888 344 6667777888888884433
No 272
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.83 E-value=0.014 Score=51.27 Aligned_cols=198 Identities=11% Similarity=0.014 Sum_probs=113.3
Q ss_pred cCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEe
Q 041206 96 KKAVTNVGLPSGSNKL-YSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVN 174 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~ 174 (371)
...+..++|++.+..| ++-...+.|..++.........+... ......++++
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~---------------------------~~~p~glavd 167 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG---------------------------LESPGGLAVD 167 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS---------------------------CSCCCCEEEE
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC---------------------------CCCccEEEEE
Confidence 3457899999755544 45456778888888765543332211 1124556676
Q ss_pred CC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc-eeEecccceeeeeCC-CeEEEEECCCceE
Q 041206 175 ND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT-RWNSKEEAAVFEFCG-HTTRTWNLDNLEC 248 (371)
Q Consensus 175 ~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~l~~~~~~~~~~~~d-g~i~iwd~~~~~~ 248 (371)
+. ++++-...+.|.+.++... .....+...- ....+++.|.+ .|+... ... +.|..+++.....
T Consensus 168 ~~~g~lY~~d~~~~~I~~~~~dg~----~~~~l~~~~l~~P~giavdp~~g~ly~td------~~~~~~I~r~~~dG~~~ 237 (386)
T 3v65_B 168 WVHDKLYWTDSGTSRIEVANLDGA----HRKVLLWQSLEKPRAIALHPMEGTIYWTD------WGNTPRIEASSMDGSGR 237 (386)
T ss_dssp TTTTEEEEEETTTTEEEECBTTSC----SCEEEECSSCSCEEEEEEETTTTEEEEEE------CSSSCEEEEEETTSCSC
T ss_pred eCCCeEEEEcCCCCeEEEEeCCCC----ceEEeecCCCCCCcEEEEEcCCCeEEEec------cCCCCEEEEEeCCCCCc
Confidence 43 4444455678888887654 2222222222 67899999854 544330 334 7888888875433
Q ss_pred EEEeecCCCcEEEEEEc--CC-eEEEEeCCCcEEEEEccCCCCcce----ecceEEEEecCCCCEEEEecCCCeEEEEEc
Q 041206 249 VQTLKGHSDTVTSLLFW--DE-YLFSSSLDETIKIWLYTHTKNNAE----LSSLFGMLDAEAKPVLFSSGKDSAIRLYEL 321 (371)
Q Consensus 249 ~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 321 (371)
.......-.....|+++ +. +.++-+..+.|..+|+........ ......+... .+.++++-...+.|..++.
T Consensus 238 ~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~ 316 (386)
T 3v65_B 238 RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANK 316 (386)
T ss_dssp EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEEC
Confidence 22223333456788887 34 445555677888888764332111 1112223332 3346667677788988887
Q ss_pred CCcceeeeec
Q 041206 322 PSFKLRARIF 331 (371)
Q Consensus 322 ~~~~~~~~~~ 331 (371)
.+++....+.
T Consensus 317 ~~G~~~~~i~ 326 (386)
T 3v65_B 317 FTGKNQEIIR 326 (386)
T ss_dssp TTCCSCEEEE
T ss_pred CCCcceEEEc
Confidence 6666554443
No 273
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.74 E-value=0.018 Score=49.80 Aligned_cols=186 Identities=12% Similarity=0.007 Sum_probs=109.3
Q ss_pred CeeEEEEeCC--EEE-EEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCC-cee-EecccceeeeeCCCeEEE
Q 041206 167 SVNALVVNND--LLF-AGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSND-TRW-NSKEEAAVFEFCGHTTRT 240 (371)
Q Consensus 167 ~v~~~~~~~~--~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~-~~l-~~~~~~~~~~~~dg~i~i 240 (371)
.+..++|++. .|+ +-...+.|..+++... .....+.... ....+++.+. +.| ++- ...+.|.+
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~----~~~~~~~~~~~~p~glavd~~~g~ly~~d-------~~~~~I~~ 142 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGS----NVEEVVSTGLESPGGLAVDWVHDKLYWTD-------SGTSRIEV 142 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSC----SCEEEECSSCSCCCEEEEETTTTEEEEEE-------TTTTEEEE
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEecCCC----CceEEEeCCCCCccEEEEecCCCeEEEEc-------CCCCeEEE
Confidence 3678888864 444 4446788988988765 2222222222 5678888864 454 454 56789999
Q ss_pred EECCCceEEEEeecCCCcEEEEEEc--CC-eEEEEeCC-CcEEEEEccCCCCcc----eecceEEE-EecCCCCEEEEec
Q 041206 241 WNLDNLECVQTLKGHSDTVTSLLFW--DE-YLFSSSLD-ETIKIWLYTHTKNNA----ELSSLFGM-LDAEAKPVLFSSG 311 (371)
Q Consensus 241 wd~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~d-g~i~iwd~~~~~~~~----~~~~~~~~-~~~~~~~~l~~~~ 311 (371)
.++........+.........++++ +. ++++-... +.|..+++....... .+..-..+ +.+.++.+.++-.
T Consensus 143 ~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~ 222 (349)
T 3v64_C 143 ANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA 222 (349)
T ss_dssp EETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET
T ss_pred EcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC
Confidence 9987544333333334566888887 33 44444444 778888765433211 12222333 4445665566666
Q ss_pred CCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccc
Q 041206 312 KDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 312 ~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
..+.|..+|+........+. .......+++ ..+ .+++-...+.|..++..++
T Consensus 223 ~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 223 KHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp TTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred CCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCC
Confidence 77899999987533222221 2345677887 344 6666667788888874333
No 274
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.67 E-value=0.022 Score=49.15 Aligned_cols=196 Identities=11% Similarity=0.020 Sum_probs=112.4
Q ss_pred cCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEe
Q 041206 96 KKAVTNVGLPSGSNKLY-SGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVN 174 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~ 174 (371)
-..+..++|++....|+ +-...+.|..++.........+... ......++++
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~---------------------------~~~p~glavd 124 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG---------------------------LESPGGLAVD 124 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS---------------------------CSCCCEEEEE
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC---------------------------CCCccEEEEe
Confidence 34578999997555555 4446778888988766543332211 1124567776
Q ss_pred CC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCC-cee-EecccceeeeeCC-CeEEEEECCCce
Q 041206 175 ND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSND-TRW-NSKEEAAVFEFCG-HTTRTWNLDNLE 247 (371)
Q Consensus 175 ~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~-~~l-~~~~~~~~~~~~d-g~i~iwd~~~~~ 247 (371)
+. ++++-...+.|.+.++... .....+...- ....+++.|. +.+ ++- ... +.|..+++....
T Consensus 125 ~~~g~ly~~d~~~~~I~~~~~dG~----~~~~l~~~~l~~P~~iavdp~~g~ly~td-------~~~~~~I~r~~~dG~~ 193 (349)
T 3v64_C 125 WVHDKLYWTDSGTSRIEVANLDGA----HRKVLLWQSLEKPRAIALHPMEGTIYWTD-------WGNTPRIEASSMDGSG 193 (349)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSC----SCEEEECTTCSCEEEEEEETTTTEEEEEE-------CSSSCEEEEEETTSCS
T ss_pred cCCCeEEEEcCCCCeEEEEcCCCC----ceEEEEeCCCCCcceEEEecCcCeEEEec-------cCCCCEEEEEeCCCCC
Confidence 53 4444455678989888754 2222222222 6789999985 454 443 344 789989887533
Q ss_pred EEEEeecCCCcEEEEEEc--CC-eEEEEeCCCcEEEEEccCCCCcce----ecceEEEEecCCCCEEEEecCCCeEEEEE
Q 041206 248 CVQTLKGHSDTVTSLLFW--DE-YLFSSSLDETIKIWLYTHTKNNAE----LSSLFGMLDAEAKPVLFSSGKDSAIRLYE 320 (371)
Q Consensus 248 ~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~~i~iwd 320 (371)
....+...-.....++++ +. +.++-...+.|..+|+........ ......+... .+.++++-...+.|..++
T Consensus 194 ~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 194 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEE
Confidence 322222233456788887 34 444555667899888764332111 1112222332 343666666778888888
Q ss_pred cCCcceeeee
Q 041206 321 LPSFKLRARI 330 (371)
Q Consensus 321 ~~~~~~~~~~ 330 (371)
..+++....+
T Consensus 273 ~~~G~~~~~i 282 (349)
T 3v64_C 273 KFTGKNQEII 282 (349)
T ss_dssp TTTCCSCEEE
T ss_pred ccCCCccEEe
Confidence 6665544433
No 275
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.62 E-value=0.024 Score=48.21 Aligned_cols=191 Identities=9% Similarity=-0.002 Sum_probs=106.6
Q ss_pred CeeEEEEeCC--EEE-EEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecC-Ccee-EecccceeeeeCCCeEEE
Q 041206 167 SVNALVVNND--LLF-AGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSN-DTRW-NSKEEAAVFEFCGHTTRT 240 (371)
Q Consensus 167 ~v~~~~~~~~--~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~-~~~l-~~~~~~~~~~~~dg~i~i 240 (371)
...+++|++. .|+ +-...+.|..+++............+...- ....+++.+ .+.+ ++- ...+.|.+
T Consensus 31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d-------~~~~~I~~ 103 (316)
T 1ijq_A 31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD-------SVLGTVSV 103 (316)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEE-------TTTTEEEE
T ss_pred ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEE-------CCCCEEEE
Confidence 3677888864 444 444568899998876100001112222222 567888876 3454 454 56789999
Q ss_pred EECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeC-C-CcEEEEEccCCCCcc----eecceEEE-EecCCCCEEEEec
Q 041206 241 WNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSL-D-ETIKIWLYTHTKNNA----ELSSLFGM-LDAEAKPVLFSSG 311 (371)
Q Consensus 241 wd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~-d-g~i~iwd~~~~~~~~----~~~~~~~~-~~~~~~~~l~~~~ 311 (371)
+|+........+.........++++ +..|+.+.. . +.|...++....... .+..-..+ +.+.++.+.++-.
T Consensus 104 ~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~ 183 (316)
T 1ijq_A 104 ADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS 183 (316)
T ss_dssp EETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred EeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC
Confidence 9987544433333334566788887 344443333 3 678777765332211 12222333 3445564556666
Q ss_pred CCCeEEEEEcCCcceeeeec----CCceEEEEEeCCCCeEEeeCCCCcEEEEEccccc
Q 041206 312 KDSAIRLYELPSFKLRARIF----SRREVEVDQIGPAGLFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 312 ~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~~~~ 365 (371)
..+.|..+|+.... ...+. .......+++..+..+++-...+.|..++..+++
T Consensus 184 ~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 184 KLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp TTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCc
Confidence 77899999987532 22221 1234577787532266676778889888875443
No 276
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.53 E-value=0.025 Score=46.21 Aligned_cols=195 Identities=12% Similarity=0.095 Sum_probs=110.7
Q ss_pred eeeCccCCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCee
Q 041206 91 KLNGHKKAVTNVGLPSGSNKLYS-GSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVN 169 (371)
Q Consensus 91 ~l~~h~~~V~~~~~~~~~~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~ 169 (371)
.+.|-.+.+..++++|++..|++ ...++.|...|.. ++.++.++.... ...-
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~--------------------------~D~E 73 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV--------------------------KDLE 73 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC--------------------------SSEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC--------------------------CChH
Confidence 45666678999999997766555 6678889999987 888887764211 1245
Q ss_pred EEEEeCC-EE-EEEeCCCeEEEEeccCCCCcceeeEEEe------cCc-ceEEEEecCCc-eeEecccceeeeeCCCeEE
Q 041206 170 ALVVNND-LL-FAGSEGGVISVWKGTFVANPFKQVASIR------APL-WFCSLSSSNDT-RWNSKEEAAVFEFCGHTTR 239 (371)
Q Consensus 170 ~~~~~~~-~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~------~~~-~v~~~~~~~~~-~l~~~~~~~~~~~~dg~i~ 239 (371)
.+++.++ .+ ++.-.++.+.++++..... ........ ..+ ....++++|++ +|+++ .......
T Consensus 74 GIa~~~~g~~~vs~E~~~~l~~~~v~~~~~-i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va-------~E~~p~~ 145 (255)
T 3qqz_A 74 TIEYIGDNQFVISDERDYAIYVISLTPNSE-VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFF-------KEKNPIE 145 (255)
T ss_dssp EEEECSTTEEEEEETTTTEEEEEEECTTCC-EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEE-------EESSSEE
T ss_pred HeEEeCCCEEEEEECCCCcEEEEEcCCCCe-eeeeeeeccccccccccCCcceEEEeCCCCEEEEE-------ECcCCce
Confidence 5666655 33 3333456777777665431 01111221 123 67899999987 56655 5444434
Q ss_pred EEECC---CceEEEEee-------cCCCcEEEEEEc---CCeEEEEeCCCcEEEEEccCCCC------------cceecc
Q 041206 240 TWNLD---NLECVQTLK-------GHSDTVTSLLFW---DEYLFSSSLDETIKIWLYTHTKN------------NAELSS 294 (371)
Q Consensus 240 iwd~~---~~~~~~~~~-------~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~------------~~~~~~ 294 (371)
+|.+. ....+..+. .+...+.+++++ +++++.+.....+..+|.+.... ...+..
T Consensus 146 i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~q 225 (255)
T 3qqz_A 146 VYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQ 225 (255)
T ss_dssp EEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCS
T ss_pred EEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCC
Confidence 44432 111122221 123356788888 45666666777777777443210 011223
Q ss_pred eEEEEecCCCCEEEEecCCCeEEEEEc
Q 041206 295 LFGMLDAEAKPVLFSSGKDSAIRLYEL 321 (371)
Q Consensus 295 ~~~~~~~~~~~~l~~~~~d~~i~iwd~ 321 (371)
-.++...+.+++.++ ++-+.++.|..
T Consensus 226 pEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 226 AEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred CCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 345555556654444 66666666654
No 277
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.43 E-value=0.044 Score=46.57 Aligned_cols=176 Identities=9% Similarity=0.058 Sum_probs=98.5
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEE--eCC---CeeEEEe--e-cCCEEEEec-------------
Q 041206 97 KAVTNVGLPS-GSNKLYSGSRDGRVSVWDRDSGRCVNVI--TNG---AEIGCLI--S-EGSWVFLGL------------- 154 (371)
Q Consensus 97 ~~V~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~---~~~~~~~--~-~~~~~~~~~------------- 154 (371)
..+..+++.+ +++ |+.+...+.|..+|..+++..... ... .....+. . ++.+.++..
T Consensus 80 ~~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~ 158 (322)
T 2fp8_A 80 GRTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 158 (322)
T ss_dssp CCEEEEEEETTTTE-EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred CCCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence 3578999998 554 555544455888887765432211 111 1122333 3 455555532
Q ss_pred -----CCcEEEEEeCCC----------CeeEEEEeCC--EEEEE-eCCCeEEEEeccCCCC-cceeeEEEecCcceEEEE
Q 041206 155 -----PNAVKSWRVNAA----------SVNALVVNND--LLFAG-SEGGVISVWKGTFVAN-PFKQVASIRAPLWFCSLS 215 (371)
Q Consensus 155 -----~~~i~~~~~~~~----------~v~~~~~~~~--~l~~~-~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~v~~~~ 215 (371)
.+.+..++..++ ....++++++ .++++ +..+.|.+|++..... ..+....+. ....++
T Consensus 159 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~---gP~gi~ 235 (322)
T 2fp8_A 159 DTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP---NPGNIK 235 (322)
T ss_dssp HHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS---SEEEEE
T ss_pred cccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC---CCCCeE
Confidence 245777776554 3356788876 45555 5568999999875321 112222111 267788
Q ss_pred ecCCceeEecccceeeeeC-----------CCeEEEEECCCceEEEEeecCC----CcEEEEEEc-CCeEEEEeCCCcEE
Q 041206 216 SSNDTRWNSKEEAAVFEFC-----------GHTTRTWNLDNLECVQTLKGHS----DTVTSLLFW-DEYLFSSSLDETIK 279 (371)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~----~~v~~~~~~-~~~l~s~~~dg~i~ 279 (371)
+.++|.++.+ .. .+.|..+|.. ++.+..+.... ..+.++++. +++.++....+.|.
T Consensus 236 ~d~~G~l~va-------~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~ 307 (322)
T 2fp8_A 236 RNADGHFWVS-------SSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVG 307 (322)
T ss_dssp ECTTSCEEEE-------EEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEE
T ss_pred ECCCCCEEEE-------ecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceE
Confidence 9999885554 32 3567788864 66666665332 235555555 33444444566677
Q ss_pred EEEcc
Q 041206 280 IWLYT 284 (371)
Q Consensus 280 iwd~~ 284 (371)
.+++.
T Consensus 308 ~~~~~ 312 (322)
T 2fp8_A 308 ILVYD 312 (322)
T ss_dssp EEEC-
T ss_pred EEecc
Confidence 77654
No 278
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.43 E-value=0.044 Score=46.59 Aligned_cols=188 Identities=12% Similarity=-0.016 Sum_probs=108.9
Q ss_pred eeEEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecC-cceEEEEecC-Ccee-EecccceeeeeCCCeEEEE
Q 041206 168 VNALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAP-LWFCSLSSSN-DTRW-NSKEEAAVFEFCGHTTRTW 241 (371)
Q Consensus 168 v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~-~~~l-~~~~~~~~~~~~dg~i~iw 241 (371)
..+++|++. ++.+-...+.|..+++..... ....+... .....+++.+ .+.| ++- ...+.|.++
T Consensus 37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~---~~~~~~~~l~~p~glavd~~~g~ly~~d-------~~~~~I~~~ 106 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES---VQNVVVSGLLSPDGLACDWLGEKLYWTD-------SETNRIEVS 106 (318)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC---CCEEEEECCSCCCEEEEETTTTEEEEEE-------TTTTEEEEE
T ss_pred cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc---eEEEEcCCCCCccEEEEEcCCCeEEEEE-------CCCCEEEEE
Confidence 567888764 444445567888888876521 11112222 2566788886 4454 454 567899999
Q ss_pred ECCCceEEEEeecCCCcEEEEEEc--CCeEEEEe--CCCcEEEEEccCCCCcc----eecceEEE-EecCCCCEEEEecC
Q 041206 242 NLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSS--LDETIKIWLYTHTKNNA----ELSSLFGM-LDAEAKPVLFSSGK 312 (371)
Q Consensus 242 d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~--~dg~i~iwd~~~~~~~~----~~~~~~~~-~~~~~~~~l~~~~~ 312 (371)
++........+.........++++ +..|+.+. ..+.|...++....... .+..-..+ +.+.++.+.++=+.
T Consensus 107 ~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~ 186 (318)
T 3sov_A 107 NLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK 186 (318)
T ss_dssp ETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred ECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECC
Confidence 987543322333344566788887 34444443 35677777765433211 11122333 44446655566667
Q ss_pred CCeEEEEEcCCcceeeeec-CCceEEEEEeCCCCeEEeeCCCCcEEEEEccccc
Q 041206 313 DSAIRLYELPSFKLRARIF-SRREVEVDQIGPAGLFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 313 d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~~~~ 365 (371)
.+.|..+|+.......... .......+++..++.+.+-...+.|..++..+++
T Consensus 187 ~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 187 LNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp TTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCC
Confidence 7899999987533221111 2345677777544466666678889888886554
No 279
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.43 E-value=0.12 Score=52.07 Aligned_cols=173 Identities=11% Similarity=0.076 Sum_probs=104.2
Q ss_pred EEEEEe----------CCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCceeEecccceeeeeCCCeEEEEECCCc
Q 041206 177 LLFAGS----------EGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNL 246 (371)
Q Consensus 177 ~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~ 246 (371)
++++|+ ..|.|.+|++... ..+.+.......++++++--. |++++| ...++++|++...
T Consensus 846 ~lvVGTa~~~~~e~~~~~Gri~vf~v~~~--kL~lv~~~~v~g~v~al~~~~-g~Lla~--------ig~~l~vy~l~~~ 914 (1158)
T 3ei3_A 846 YFIVGTAMVYPEEAEPKQGRIVVFQYSDG--KLQTVAEKEVKGAVYSMVEFN-GKLLAS--------INSTVRLYEWTTE 914 (1158)
T ss_dssp EEEEEEEECCTTCSSCCCEEEEEEEEETT--EEEEEEEEEESSCEEEEEEET-TEEEEE--------ETTEEEEEEECTT
T ss_pred EEEEEeeecCCCCCCCCceEEEEEEEECC--EEEEEEEEEcCCcCEEEeeeC-CEEEEE--------cCCEEEEEECCCC
Confidence 788886 3588999998743 223333333322788887665 576554 4689999999866
Q ss_pred eEEE-EeecCCC-cEEEEEEcCCeEEEEeCCCcEEEEEccCCCC-------cceecceEEEEecCCCCEEEEecCCCeEE
Q 041206 247 ECVQ-TLKGHSD-TVTSLLFWDEYLFSSSLDETIKIWLYTHTKN-------NAELSSLFGMLDAEAKPVLFSSGKDSAIR 317 (371)
Q Consensus 247 ~~~~-~~~~~~~-~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 317 (371)
+.+. ....+.. .+..+...+++++.|..-..+.++.++.... ......+.++..-+.. .++.+..+|.+.
T Consensus 915 ~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~ 993 (1158)
T 3ei3_A 915 KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLF 993 (1158)
T ss_dssp SCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEE
T ss_pred ceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCCcEE
Confidence 5443 1111211 1335555589999998888888876554331 1111233333333334 788899999999
Q ss_pred EEEcCCc-------c---eeeeecCCceEEEEE---eCCC---------C-eEEeeCCCCcEEEEEc
Q 041206 318 LYELPSF-------K---LRARIFSRREVEVDQ---IGPA---------G-LFFPGDASGSVGVWKW 361 (371)
Q Consensus 318 iwd~~~~-------~---~~~~~~~~~~v~~~~---~s~~---------~-~l~~~~~dg~i~iw~~ 361 (371)
++..... . ....+.....|+++. +.+. . .++.++.+|.|.+.-.
T Consensus 994 vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A 994 VCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp EEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEEE
T ss_pred EEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEEE
Confidence 9876542 1 222333466777775 3321 2 5788888999977643
No 280
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.37 E-value=0.075 Score=47.90 Aligned_cols=234 Identities=9% Similarity=0.058 Sum_probs=131.5
Q ss_pred CeEEEEEcC-CCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEE--
Q 041206 98 AVTNVGLPS-GSNKLYSGS-RDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVV-- 173 (371)
Q Consensus 98 ~V~~~~~~~-~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~-- 173 (371)
....|+|+| +...|+.+. ..+.|++.|..++........... .......++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~------------------------~~~~p~~ia~~~ 195 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTI------------------------PTNRIRSIAFNK 195 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTS------------------------SCSBEEEEEECC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCcc------------------------ccCCCcEEEEee
Confidence 367899998 355555554 346788888887766554432210 0113677888
Q ss_pred -----eCC--EEEEEeCCC-------eEEEEeccCCCCcce--e-eEEEecCcceEEEEecCC-cee-EecccceeeeeC
Q 041206 174 -----NND--LLFAGSEGG-------VISVWKGTFVANPFK--Q-VASIRAPLWFCSLSSSND-TRW-NSKEEAAVFEFC 234 (371)
Q Consensus 174 -----~~~--~l~~~~~dg-------~v~iwd~~~~~~~~~--~-~~~~~~~~~v~~~~~~~~-~~l-~~~~~~~~~~~~ 234 (371)
+++ .|+++...+ .|.+++..... .+. . ...+........++++|+ +.| ++- ..
T Consensus 196 ~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G-~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd-------~~ 267 (496)
T 3kya_A 196 KIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADG-TFDDRSDIQLIAAYKQCNGATIHPINGELYFNS-------YE 267 (496)
T ss_dssp CBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTS-CCSTTSCEEEEEEESCCCCEEECTTTCCEEEEE-------TT
T ss_pred cccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCC-ceeecccceeeccCCCceEEEEcCCCCeEEEEE-------CC
Confidence 666 566665544 25566533311 111 0 022222224567788995 454 455 67
Q ss_pred CCeEEEEECC-------CceE-----------EEE-ee-cCCCcEEEEEEc--CCe-EEEEeCCCcEEEEEccCCCC---
Q 041206 235 GHTTRTWNLD-------NLEC-----------VQT-LK-GHSDTVTSLLFW--DEY-LFSSSLDETIKIWLYTHTKN--- 288 (371)
Q Consensus 235 dg~i~iwd~~-------~~~~-----------~~~-~~-~~~~~v~~~~~~--~~~-l~s~~~dg~i~iwd~~~~~~--- 288 (371)
++.|+.+|+. ++.. ... +. +....-..++|+ +++ .++-+..+.|+.+++.....
T Consensus 268 ~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~ 347 (496)
T 3kya_A 268 KGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFI 347 (496)
T ss_dssp TTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEC
T ss_pred CCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceec
Confidence 7889999987 4443 111 21 123345789998 564 45555677888866432110
Q ss_pred --------------------cceecceE-EEEec-------CCCCEEEEecCCCeEEEEEcCCcceeeeecC--------
Q 041206 289 --------------------NAELSSLF-GMLDA-------EAKPVLFSSGKDSAIRLYELPSFKLRARIFS-------- 332 (371)
Q Consensus 289 --------------------~~~~~~~~-~~~~~-------~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------- 332 (371)
...+..-. .++.. ..+.++++=..+..|+.++. ++. +..+..
T Consensus 348 ~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~ 425 (496)
T 3kya_A 348 TPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTSLA 425 (496)
T ss_dssp CCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHHHH
T ss_pred ccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEEeccccccccc
Confidence 00111122 23332 33445666667788999984 443 222211
Q ss_pred -----------------CceEEEEEeCCC-C-eEEeeCCCCcEEEEEccccc
Q 041206 333 -----------------RREVEVDQIGPA-G-LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 333 -----------------~~~v~~~~~s~~-~-~l~~~~~dg~i~iw~~~~~~ 365 (371)
-.....|+++++ + ++++=..+..|+.+++....
T Consensus 426 ~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 426 DGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp HSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred CccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 124678999997 7 66666778899999987643
No 281
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.049 Score=46.52 Aligned_cols=180 Identities=12% Similarity=0.033 Sum_probs=100.2
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeCC--CeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCCEEEEE--eCC
Q 041206 109 NKLYSGSRDGRVSVWDRDSGRCVNVITNG--AEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNNDLLFAG--SEG 184 (371)
Q Consensus 109 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~l~~~--~~d 184 (371)
..++.++.||.|.-.|..+|+.+.++... .+..... ..... ....++.+ +.|
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~--------------------~~~~~----~~~~~~vv~p~~d 66 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQ--------------------EPSRL----ETYETLIIEPFGD 66 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECC--------------------CSCTT----TSSEEEEECCSTT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEec--------------------CCccc----cCCcEEEEEECCC
Confidence 47889999999999999999999988764 2211100 00000 11133333 578
Q ss_pred CeEEEEeccCCCCcceeeEEEecCcce--EEEEe------------cCCceeEecccceeeeeCCCeEEEEECCCceEEE
Q 041206 185 GVISVWKGTFVANPFKQVASIRAPLWF--CSLSS------------SNDTRWNSKEEAAVFEFCGHTTRTWNLDNLECVQ 250 (371)
Q Consensus 185 g~v~iwd~~~~~~~~~~~~~~~~~~~v--~~~~~------------~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~ 250 (371)
|.|..++..++ .....+.....+ .-+.. +.++.+++| +.+|.+...|+++|+.+.
T Consensus 67 G~l~a~~~~~G----~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~G-------s~~g~l~ald~~tG~~~W 135 (339)
T 2be1_A 67 GNIYYFNAHQG----LQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTG-------SMRTIMYTINMLNGEIIS 135 (339)
T ss_dssp TEEEEEETTTE----EEEEEEEHHHHHTTCSEEEECC----------CCEEEEEC-------EEEEEEEEEETTTCCEEE
T ss_pred CEEEEEECCCC----cEEeeeccccceeccccccCCCceeecccccccCCEEEEE-------ecCCEEEEEECCCCcEEE
Confidence 99999988776 333333322211 00111 245668888 999999999999999998
Q ss_pred EeecCCC-------cEEEEE---E----cCCeEEEEeCCCcEEEEEccCCCCcceecceEEEEe--------------cC
Q 041206 251 TLKGHSD-------TVTSLL---F----WDEYLFSSSLDETIKIWLYTHTKNNAELSSLFGMLD--------------AE 302 (371)
Q Consensus 251 ~~~~~~~-------~v~~~~---~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--------------~~ 302 (371)
++..... ...|.. + .+..++.+..+..+.+.+ +..+ ....-...+. ..
T Consensus 136 ~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~---~W~~~~s~~~~~~~~~~~~~~~~~s~ 211 (339)
T 2be1_A 136 AFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA---SYNVTYSTWQQNVLDVPLALQNTFSK 211 (339)
T ss_dssp EESTTCBCC--------------------CCEEEEEEEEEECEECC-TTSC---CCCCEEEEEECCTTTHHHHTTCSSCS
T ss_pred EEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC---eEEEeccccccccccccccccccccc
Confidence 8863211 011111 1 134555555555555544 1111 0000000000 01
Q ss_pred CCCEEEEecCCCeEEEEEcCCcceee
Q 041206 303 AKPVLFSSGKDSAIRLYELPSFKLRA 328 (371)
Q Consensus 303 ~~~~l~~~~~d~~i~iwd~~~~~~~~ 328 (371)
++.+ +.++.||.|.-+|..+++.+.
T Consensus 212 Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 212 DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 2323 557888999999998888776
No 282
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.33 E-value=0.021 Score=57.45 Aligned_cols=224 Identities=12% Similarity=0.041 Sum_probs=124.2
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEe-CCEEEEEe
Q 041206 104 LPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVN-NDLLFAGS 182 (371)
Q Consensus 104 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~-~~~l~~~~ 182 (371)
.+|..+.+|--. ..++.|+|+++.+.++.+....+ |.--.|- ++.|+..+
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~----------------------------VvfWkWis~~~l~lVT 123 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD----------------------------VTFWKWISLNTVALVT 123 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhcccccCCC----------------------------ceEEEecCCCeeEEEc
Confidence 456655555543 56677777777666666554333 3333443 33444333
Q ss_pred CCCeEEEEeccCCCCcceeeEEEecC----c-ceEEEEecCCce--eEecccceeeeeCCCeEEEEECCCceEEEEeecC
Q 041206 183 EGGVISVWKGTFVANPFKQVASIRAP----L-WFCSLSSSNDTR--WNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGH 255 (371)
Q Consensus 183 ~dg~v~iwd~~~~~~~~~~~~~~~~~----~-~v~~~~~~~~~~--l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~ 255 (371)
+..|+-|++.... .+...+..| . .|..-..+++.+ +++|= .---+.-.|.+.+|..+.+ ..+.+.||
T Consensus 124 -~~aVyHW~~~~~s---~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi-~~~~~~v~G~mQLyS~er~-~sQ~iegh 197 (1630)
T 1xi4_A 124 -DNAVYHWSMEGES---QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI-SAQQNRVVGAMQLYSVDRK-VSQPIEGH 197 (1630)
T ss_pred -CCeEEEeccCCCC---ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEee-ccCCCcccceeeeeecccc-cchhhhHh
Confidence 4679999997533 344444433 2 777788888887 34440 0000134588999998753 44566777
Q ss_pred CCcEEEEEEc----CCeEEEEe----CCCcEEEEEccCC-CCccee----------------cceEEEEecCCCCEEEEe
Q 041206 256 SDTVTSLLFW----DEYLFSSS----LDETIKIWLYTHT-KNNAEL----------------SSLFGMLDAEAKPVLFSS 310 (371)
Q Consensus 256 ~~~v~~~~~~----~~~l~s~~----~dg~i~iwd~~~~-~~~~~~----------------~~~~~~~~~~~~~~l~~~ 310 (371)
.+....+... +..+++-. ..+++.|-++..+ .....+ -.+....++..+ ++..-
T Consensus 198 a~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~i 276 (1630)
T 1xi4_A 198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLI 276 (1630)
T ss_pred HhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC-EEEEE
Confidence 6655544444 22233222 1368888888654 111111 012222333334 77777
Q ss_pred cCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC-eEEeeCCCCcEEEEEccc
Q 041206 311 GKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG-LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 311 ~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~ 363 (371)
+.-|.|++||+.++.++..-. ...+|...+-++.. =++.....|.|.--.+..
T Consensus 277 tk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 277 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred ecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence 889999999999998876544 34455544444332 344444666655444443
No 283
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.26 E-value=0.073 Score=45.44 Aligned_cols=216 Identities=17% Similarity=0.183 Sum_probs=123.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCCE--------E
Q 041206 107 GSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNNDL--------L 178 (371)
Q Consensus 107 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~--------l 178 (371)
...+++.....+-+.++|+ +|+.+..+..+. ++.+..-|.+ +
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~-----------------------------~nnVD~r~~~~l~g~~~dl 88 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNTGK-----------------------------LNNVDIRYDFPLNGKKVDI 88 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECCSC-----------------------------EEEEEEEEEEEETTEEEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccCCC-----------------------------cccEEEecccccCCceEeE
Confidence 3455666667788999999 888888876421 3333333321 2
Q ss_pred EEE--eC--CCeEEEEeccCCCCcceeeEEEe-------cC-cceEEEEe--cCC-ce--eEecccceeeeeCCCeEEEE
Q 041206 179 FAG--SE--GGVISVWKGTFVANPFKQVASIR-------AP-LWFCSLSS--SND-TR--WNSKEEAAVFEFCGHTTRTW 241 (371)
Q Consensus 179 ~~~--~~--dg~v~iwd~~~~~~~~~~~~~~~-------~~-~~v~~~~~--~~~-~~--l~~~~~~~~~~~~dg~i~iw 241 (371)
+.+ .. +++|.+|++.... ..+..+. .. ..+..+++ +|. ++ +++. ..+|.+..|
T Consensus 89 a~as~R~~~~n~l~vf~iDp~~---~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~-------~k~G~~~q~ 158 (355)
T 3amr_A 89 AAASNRSEGKNTIEIYAIDGKN---GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVT-------GKEGEFEQY 158 (355)
T ss_dssp EEEEECSTTCCEEEEEEECTTT---CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEE-------CSSSEEEEE
T ss_pred EEEeCCCCCCCeEEEEEECCCC---CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEE-------CCCCeEEEE
Confidence 333 33 5789999774322 1233331 11 24555666 663 43 5666 788999999
Q ss_pred ECC-------CceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCC--C--------cc----eecceEEE
Q 041206 242 NLD-------NLECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTK--N--------NA----ELSSLFGM 298 (371)
Q Consensus 242 d~~-------~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~--~--------~~----~~~~~~~~ 298 (371)
++. +.+.+++|... ..+-.+... ...|+.+-++.-|..++.+... . .. ....+...
T Consensus 159 ~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~ 237 (355)
T 3amr_A 159 ELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIY 237 (355)
T ss_dssp EEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEE
T ss_pred EEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEE
Confidence 982 34667777753 467777777 4688888888665555533211 0 01 11223222
Q ss_pred EecCCCCEE-EEecCCCeEEEEEcC-Ccceeeeec---C--------Cc--eEEEEEeC---CCCeEEeeCC--------
Q 041206 299 LDAEAKPVL-FSSGKDSAIRLYELP-SFKLRARIF---S--------RR--EVEVDQIG---PAGLFFPGDA-------- 352 (371)
Q Consensus 299 ~~~~~~~~l-~~~~~d~~i~iwd~~-~~~~~~~~~---~--------~~--~v~~~~~s---~~~~l~~~~~-------- 352 (371)
..+++..+| +++-.++...+||.. +.+.+..+. + .. .|..+.+. |.|++++-..
T Consensus 238 ~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~Ig~~~~idgv~eTDG~~v~~~~lG~~fP~Gl~V~qDg~n~~~~~~ 317 (355)
T 3amr_A 238 YAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFRITDGPETDGTSDTDGIDVLGFGLGPEYPFGIFVAQDGENIDHGQK 317 (355)
T ss_dssp ECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEECCCSSSCCCCSCCCEEEECSCCSTTCTTCEEEEEESSCEETTEE
T ss_pred ecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEecCCCCceeeeccCcceEEccccCCCCCCcEEEEecCCcccCCCC
Confidence 223333244 454467899999997 666666663 1 12 23333342 5565555433
Q ss_pred -CCcEEEEEccc
Q 041206 353 -SGSVGVWKWLL 363 (371)
Q Consensus 353 -dg~i~iw~~~~ 363 (371)
+...++.++..
T Consensus 318 ~~qnFk~v~w~~ 329 (355)
T 3amr_A 318 ANQNFKIVPWER 329 (355)
T ss_dssp CCCEEEEEEHHH
T ss_pred cCceEEEEEHHH
Confidence 57788888753
No 284
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.26 E-value=0.089 Score=46.34 Aligned_cols=198 Identities=13% Similarity=0.028 Sum_probs=113.7
Q ss_pred ccCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCc----eEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCee
Q 041206 95 HKKAVTNVGLPSGSNKLYSG-SRDGRVSVWDRDSGR----CVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVN 169 (371)
Q Consensus 95 h~~~V~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~ 169 (371)
.-..+..++|++.+..|+-+ ...+.|+.+++.... ....+.. ......
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~---------------------------~~~~p~ 162 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---------------------------DIQAPD 162 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS---------------------------SCSCEE
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC---------------------------CCCCcc
Confidence 45678899999855555444 456778888876421 1111110 112366
Q ss_pred EEEEeC--C-EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCC-ceeEecccceeeee--CCCeEEEEE
Q 041206 170 ALVVNN--D-LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSND-TRWNSKEEAAVFEF--CGHTTRTWN 242 (371)
Q Consensus 170 ~~~~~~--~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~-~~l~~~~~~~~~~~--~dg~i~iwd 242 (371)
.+++++ . ++++-...+.|.+.++... .....+...- ....+++.|. +.|+.. . ..+.|...+
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~----~~~~l~~~~~~~P~~iavdp~~g~ly~t-------d~~~~~~I~~~~ 231 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGV----KRKTLFRENGSKPRAIVVDPVHGFMYWT-------DWGTPAKIKKGG 231 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTC----SEEEEEECSSCCEEEEEEETTTTEEEEE-------ECSSSCCEEEEE
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCC----ceEEEEeCCCCCcceEEEecccCeEEEE-------eCCCCCEEEEEe
Confidence 777775 2 4444455788999988765 2222333222 6889999985 455444 3 236888888
Q ss_pred CCCceEEEEeecCCCcEEEEEEc--CCeE-EEEeCCCcEEEEEccCCCCccee------cceEEEEecCCCCEEEEecCC
Q 041206 243 LDNLECVQTLKGHSDTVTSLLFW--DEYL-FSSSLDETIKIWLYTHTKNNAEL------SSLFGMLDAEAKPVLFSSGKD 313 (371)
Q Consensus 243 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~d 313 (371)
+........+...-.....|+++ +..| ++-...+.|..+|+......... ..-..+.. .++.++++-...
T Consensus 232 ~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~ 310 (400)
T 3p5b_L 232 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIIN 310 (400)
T ss_dssp TTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSS
T ss_pred CCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCC
Confidence 87543333333333567788888 4444 44455678888887643321111 11122222 334466677777
Q ss_pred CeEEEEEcCCcceeeeec
Q 041206 314 SAIRLYELPSFKLRARIF 331 (371)
Q Consensus 314 ~~i~iwd~~~~~~~~~~~ 331 (371)
+.|..+|..+++.+..+.
T Consensus 311 ~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 311 EAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp CSEEEEESSSCCCCEEEE
T ss_pred CeEEEEEcCCCCceEEEe
Confidence 889999977776665554
No 285
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.24 E-value=0.13 Score=48.60 Aligned_cols=208 Identities=9% Similarity=-0.015 Sum_probs=111.2
Q ss_pred CCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceEEEEeCCC---eeEEEe-ecCCEEEEec--C-----CcEEEEEeC
Q 041206 97 KAVTNVGLPSGSNKLYSGSR-DGRVSVWDRDSGRCVNVITNGA---EIGCLI-SEGSWVFLGL--P-----NAVKSWRVN 164 (371)
Q Consensus 97 ~~V~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~--~-----~~i~~~~~~ 164 (371)
....++++.+++++++.|+. +..+.+||..+++-...-.... ...+.. .++++++.+. + ..+.+||..
T Consensus 243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred CccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence 33445778889999999984 5589999998876544322211 122233 3677776654 2 568999998
Q ss_pred CCCeeEEE-----------------EeCCEEEEEeCC---------CeEEEEeccCCCCcceeeEEEec------Cc-ce
Q 041206 165 AASVNALV-----------------VNNDLLFAGSEG---------GVISVWKGTFVANPFKQVASIRA------PL-WF 211 (371)
Q Consensus 165 ~~~v~~~~-----------------~~~~~l~~~~~d---------g~v~iwd~~~~~~~~~~~~~~~~------~~-~v 211 (371)
+..-..+. .....++.|+.+ ..+..||..+.... ........ .. .-
T Consensus 323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~-~~~~~~~~~~~~~~~~~~~ 401 (656)
T 1k3i_A 323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV-KSAGKRQSNRGVAPDAMCG 401 (656)
T ss_dssp TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE-EEEEECEETTEECCCCBTC
T ss_pred CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCccee-ecCCccccccccCCCCCCC
Confidence 77544331 111134455444 35677887765210 11111111 01 22
Q ss_pred EEEEec-CCce-eEecccceeeeeCCC-----------eEEEEECCCceEEEEe--ecCCC--cEEEEEE-cCCeEEEEe
Q 041206 212 CSLSSS-NDTR-WNSKEEAAVFEFCGH-----------TTRTWNLDNLECVQTL--KGHSD--TVTSLLF-WDEYLFSSS 273 (371)
Q Consensus 212 ~~~~~~-~~~~-l~~~~~~~~~~~~dg-----------~i~iwd~~~~~~~~~~--~~~~~--~v~~~~~-~~~~l~s~~ 273 (371)
.++.+. .+++ ++.| +.++ .+.+||..+.+..... ..+.. ...++.. .++.++.|+
T Consensus 402 ~av~~~~~~~~i~v~G-------G~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG 474 (656)
T 1k3i_A 402 NAVMYDAVKGKILTFG-------GSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGG 474 (656)
T ss_dssp EEEEEETTTTEEEEEC-------CBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECC
T ss_pred ceEeccCCCCeEEEEe-------CCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECC
Confidence 333333 2555 5666 5322 6888998876654332 11222 2233444 477888887
Q ss_pred CC-----------CcEEEEEccCCC------CcceecceEEEEecCCCCEEEEecC
Q 041206 274 LD-----------ETIKIWLYTHTK------NNAELSSLFGMLDAEAKPVLFSSGK 312 (371)
Q Consensus 274 ~d-----------g~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~ 312 (371)
.+ ..+.+||....+ ..............+++++++.|+.
T Consensus 475 ~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 475 QRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp BSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 54 468999976543 1111112222233345558888874
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.12 E-value=0.21 Score=48.04 Aligned_cols=196 Identities=13% Similarity=0.011 Sum_probs=108.9
Q ss_pred ccCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCc----eEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCee
Q 041206 95 HKKAVTNVGLPSGSNK-LYSGSRDGRVSVWDRDSGR----CVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVN 169 (371)
Q Consensus 95 h~~~V~~~~~~~~~~~-l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~ 169 (371)
....+..|+|.+.... +++-...+.|+.+++.... ....+. .......
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~---------------------------~~l~~P~ 474 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---------------------------RDIQAPD 474 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC---------------------------SSCSCCC
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe---------------------------cCCCCcc
Confidence 3456788999885444 4454556778888876421 111111 0112356
Q ss_pred EEEEeCC---EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCC-ceeEecccceeeee-C-CCeEEEEE
Q 041206 170 ALVVNND---LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSND-TRWNSKEEAAVFEF-C-GHTTRTWN 242 (371)
Q Consensus 170 ~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~-~~l~~~~~~~~~~~-~-dg~i~iwd 242 (371)
.|+++.. ++++-...+.|.+.++... .....+...- ....|++.|. +.|+.. . . .+.|...+
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~----~~~~l~~~~l~~P~gIaVDp~~g~LYwt-------D~g~~~~I~~~~ 543 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGV----KRKTLFRENGSKPRAIVVDPVHGFMYWT-------DWGTPAKIKKGG 543 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSS----SEEEEEECTTCCEEEEEEETTTTEEEEE-------ECSSSCEEEEEE
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCC----eEEEEEeCCCCCcceEEEecCCCCEEEe-------cCCCCCeEEEEe
Confidence 6777643 4455556788999998765 2222222223 7889999986 555444 3 2 36888898
Q ss_pred CCCceEEEEeecCCCcEEEEEEc--CCeE-EEEeCCCcEEEEEccCCCCccee------cceEEEEecCCCCEEEEecCC
Q 041206 243 LDNLECVQTLKGHSDTVTSLLFW--DEYL-FSSSLDETIKIWLYTHTKNNAEL------SSLFGMLDAEAKPVLFSSGKD 313 (371)
Q Consensus 243 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~d 313 (371)
+........+...-.....|+++ ...| ++=...+.|...++........+ ..-..+.. .++.++++-...
T Consensus 544 ~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav-~~~~lYwtD~~~ 622 (791)
T 3m0c_C 544 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIIN 622 (791)
T ss_dssp TTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE-ETTEEEEEETTT
T ss_pred cCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE-eCCEEEEEECCC
Confidence 87544433333334567788887 4444 44445667888887544322111 11112222 233355566667
Q ss_pred CeEEEEEcCCcceeee
Q 041206 314 SAIRLYELPSFKLRAR 329 (371)
Q Consensus 314 ~~i~iwd~~~~~~~~~ 329 (371)
+.|...|..+++.+..
T Consensus 623 ~~I~~~dk~tG~~~~~ 638 (791)
T 3m0c_C 623 EAIFSANRLTGSDVNL 638 (791)
T ss_dssp TEEEEEETTTCCCCEE
T ss_pred CEEEEEeCCCCcceEE
Confidence 7888888766654433
No 287
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.09 E-value=0.007 Score=57.63 Aligned_cols=192 Identities=9% Similarity=-0.019 Sum_probs=103.2
Q ss_pred CeeEEEEeCC--EEEEE-eCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCC-ce-eEecccceeeeeCCCeEEE
Q 041206 167 SVNALVVNND--LLFAG-SEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSND-TR-WNSKEEAAVFEFCGHTTRT 240 (371)
Q Consensus 167 ~v~~~~~~~~--~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~-~~-l~~~~~~~~~~~~dg~i~i 240 (371)
.+..++|++. .|+.+ ...+.|+.+++............+.... ....+++.+. +. +++- ...+.|.+
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD-------~~~~~I~v 479 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD-------SVLGTVSV 479 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECC-------TTTSCEEE
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEe-------ccCCeEEE
Confidence 3567778764 44444 3457888888775100001111111111 4556777753 44 4444 56788999
Q ss_pred EECCCceEEEEeecCCCcEEEEEEc--CCeEEEEe-C-CCcEEEEEccCCCCcc----eecceEEE-EecCCCCEEEEec
Q 041206 241 WNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSS-L-DETIKIWLYTHTKNNA----ELSSLFGM-LDAEAKPVLFSSG 311 (371)
Q Consensus 241 wd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~-~-dg~i~iwd~~~~~~~~----~~~~~~~~-~~~~~~~~l~~~~ 311 (371)
+++........+.........++++ +.+|+.+. . .+.|..+++....... .+..-..+ +.+.++.++++-.
T Consensus 480 ~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~ 559 (699)
T 1n7d_A 480 ADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS 559 (699)
T ss_dssp EBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEET
T ss_pred EecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEec
Confidence 9987654433333223345677776 33333332 2 2677777654332211 11111222 4445666777777
Q ss_pred CCCeEEEEEcCCcceeeeecC----CceEEEEEeCCCCeEEeeCCCCcEEEEEccccce
Q 041206 312 KDSAIRLYELPSFKLRARIFS----RREVEVDQIGPAGLFFPGDASGSVGVWKWLLAEQ 366 (371)
Q Consensus 312 ~d~~i~iwd~~~~~~~~~~~~----~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~~~~~ 366 (371)
..+.|..+++...... .+.. ......|++..+.++++....+.|..++..+++.
T Consensus 560 ~~~~I~~~d~dG~~~~-~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 560 KLHSISSIDVNGGNRK-TILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp TTTEEEEECSSSSCCE-EECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEE
T ss_pred CCCeEEEEccCCCceE-EEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCc
Confidence 7889999998753222 2221 1233455665444666667778999998765543
No 288
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.06 E-value=0.14 Score=45.04 Aligned_cols=191 Identities=8% Similarity=-0.046 Sum_probs=108.5
Q ss_pred CeeEEEEeCC--EEEEE-eCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecC-Ccee-EecccceeeeeCCCeEEE
Q 041206 167 SVNALVVNND--LLFAG-SEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSN-DTRW-NSKEEAAVFEFCGHTTRT 240 (371)
Q Consensus 167 ~v~~~~~~~~--~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~-~~~l-~~~~~~~~~~~~dg~i~i 240 (371)
.+..++|++. .|+.. ...+.|+.+++............+.... ....+++.+ .+.| ++- ...+.|.+
T Consensus 113 ~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d-------~~~~~I~~ 185 (400)
T 3p5b_L 113 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD-------SVLGTVSV 185 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEE-------TTTTEEEE
T ss_pred cceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEE-------CCCCeEEE
Confidence 4778888864 44444 4567888888865310001222222222 677888887 4554 454 56789999
Q ss_pred EECCCceEEEEeecCCCcEEEEEEc--CCeEEEEe-C-CCcEEEEEccCCCCcce----ecceEEE-EecCCCCEEEEec
Q 041206 241 WNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSS-L-DETIKIWLYTHTKNNAE----LSSLFGM-LDAEAKPVLFSSG 311 (371)
Q Consensus 241 wd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~-~-dg~i~iwd~~~~~~~~~----~~~~~~~-~~~~~~~~l~~~~ 311 (371)
.++........+.........++++ +.+|+... . .+.|...++........ +..-..+ +.+.++.+.++=.
T Consensus 186 ~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~ 265 (400)
T 3p5b_L 186 ADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS 265 (400)
T ss_dssp ECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred EeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEEC
Confidence 9998655544444444557888887 34444433 2 36788887654432111 1222333 3445554555556
Q ss_pred CCCeEEEEEcCCcceeeeec---CCceEEEEEeCCCCeEEeeCCCCcEEEEEcccc
Q 041206 312 KDSAIRLYELPSFKLRARIF---SRREVEVDQIGPAGLFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 312 ~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~~~ 364 (371)
..+.|..+|+.......... .-.....+++..+.++++-...+.|..++..++
T Consensus 266 ~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 266 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp TTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSC
T ss_pred CCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCC
Confidence 67899999987543222211 123456777743336666677788888885444
No 289
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.97 E-value=0.12 Score=46.10 Aligned_cols=146 Identities=11% Similarity=-0.015 Sum_probs=88.3
Q ss_pred ceEEEEecCC--ceeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeC-CC----cEEE
Q 041206 210 WFCSLSSSND--TRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSL-DE----TIKI 280 (371)
Q Consensus 210 ~v~~~~~~~~--~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg----~i~i 280 (371)
....++++|+ +.|+.+ ...+.|+.+|+.+++..... ........++++ +++|+.+.. ++ .+..
T Consensus 138 ~P~~lavdp~~~g~Lyv~-------d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~ 209 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLV-------GEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYI 209 (430)
T ss_dssp CCCEEEEETTEEEEEEEE-------EBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEE
T ss_pred CCCEEEECCCCCCeEEEE-------eCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEE
Confidence 4567889973 567666 55589999999876654433 345567889998 564555543 22 2333
Q ss_pred EEccCCCCc-ce---ecceEEE-EecCCCCEEEEecCCCeEEEEEcCCcceee--eecCCceEEEEEeCCCC--eEEeeC
Q 041206 281 WLYTHTKNN-AE---LSSLFGM-LDAEAKPVLFSSGKDSAIRLYELPSFKLRA--RIFSRREVEVDQIGPAG--LFFPGD 351 (371)
Q Consensus 281 wd~~~~~~~-~~---~~~~~~~-~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~v~~~~~s~~~--~l~~~~ 351 (371)
++....... .. ......+ ..+.++.++++-..++.|..++........ ........+.++|+|+| ++++-.
T Consensus 210 ~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 210 LTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp EEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred EeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence 332211110 01 1111122 344366566676678899999998765422 22223457899999999 455556
Q ss_pred CCCcEEEEEccc
Q 041206 352 ASGSVGVWKWLL 363 (371)
Q Consensus 352 ~dg~i~iw~~~~ 363 (371)
..+.|..++...
T Consensus 290 ~~~~I~~~~~d~ 301 (430)
T 3tc9_A 290 NQHYILRSDYDW 301 (430)
T ss_dssp TTTEEEEEEEET
T ss_pred CCCEEEEEeCCc
Confidence 778999988763
No 290
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.96 E-value=0.056 Score=46.12 Aligned_cols=125 Identities=11% Similarity=0.060 Sum_probs=82.2
Q ss_pred eCCCeEEEEECCCceEEEEeecCCCcEEEEEEcCC---------e-EEEEeC--CCcEEEEEcc--CCCC--c-------
Q 041206 233 FCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDE---------Y-LFSSSL--DETIKIWLYT--HTKN--N------- 289 (371)
Q Consensus 233 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---------~-l~s~~~--dg~i~iwd~~--~~~~--~------- 289 (371)
...+-+.+||+ +++.++.+.. +.++.+..-+. + +++.-. +++|.+|++. ...- .
T Consensus 47 ~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv 123 (355)
T 3amr_A 47 NKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPI 123 (355)
T ss_dssp ETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCE
T ss_pred cCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCc
Confidence 67789999999 7888888764 45666655422 2 233334 5789999763 2110 0
Q ss_pred ----ceecceEEEEecCCCC-EEEEecCCCeEEEEEc-------CCcceeeeecCCceEEEEEeCCCC-eEEeeCCCCcE
Q 041206 290 ----AELSSLFGMLDAEAKP-VLFSSGKDSAIRLYEL-------PSFKLRARIFSRREVEVDQIGPAG-LFFPGDASGSV 356 (371)
Q Consensus 290 ----~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~-------~~~~~~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i 356 (371)
.....++....+..+. ++++...+|.+..|++ .+.+++.++.....+..+...+.. .|+.+-++.-|
T Consensus 124 ~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GI 203 (355)
T 3amr_A 124 ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAI 203 (355)
T ss_dssp ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEE
T ss_pred CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccceE
Confidence 1112344333444443 6888888999999998 334667777767788899998877 88888888654
Q ss_pred EEEE
Q 041206 357 GVWK 360 (371)
Q Consensus 357 ~iw~ 360 (371)
..++
T Consensus 204 w~~d 207 (355)
T 3amr_A 204 WKFS 207 (355)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4444
No 291
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.96 E-value=0.047 Score=52.50 Aligned_cols=194 Identities=12% Similarity=0.034 Sum_probs=97.3
Q ss_pred ceeeeeee-ecceeeccceeeCC-ccceEEEEEeccCCCCccCCc-eee-EeeeCccCCeEEEEEcCCCCEEEEEeCC--
Q 041206 44 GLAAMAIR-VCNNWISDSCVYGD-KCRFLHSWVHSVDGDNTTNSL-ATL-MKLNGHKKAVTNVGLPSGSNKLYSGSRD-- 117 (371)
Q Consensus 44 ~v~~~~~~-~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~-~~~-~~l~~h~~~V~~~~~~~~~~~l~s~~~d-- 117 (371)
.+...+++ |.+.+++-.....+ ....|++++.. ++ +.+ ..+.. ....++|+||++.|+-...|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~--------~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~ 243 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRIS--------DPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDET 243 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETT--------CTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECC--------CCCEeCCccccC---ceeeEEEecCCCEEEEEEECCC
Confidence 34455677 77665443333222 22346666621 22 211 11211 13467899999888777655
Q ss_pred ---CcEEEEECCCCce--EEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC--EEEEEe---CCCeE
Q 041206 118 ---GRVSVWDRDSGRC--VNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND--LLFAGS---EGGVI 187 (371)
Q Consensus 118 ---g~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~--~l~~~~---~dg~v 187 (371)
..|.++++.+++. ...+... .......+.++|+ +|+..+ ....|
T Consensus 244 ~~~~~v~~~~lgt~~~~~~lv~~~~--------------------------~~~~~~~~~~SpDg~~l~~~~~~~~~~~l 297 (751)
T 2xe4_A 244 LRENKVWRHVMGKLQSEDVCLYEEH--------------------------NPLFSAFMYKAADTNTLCIGSQSPETAEV 297 (751)
T ss_dssp CCEEEEEEEETTSCGGGCEEEEECC--------------------------CTTCEEEEEECTTSSEEEEEEECSSCEEE
T ss_pred CCCCEEEEEECCCCchhcEEEEecC--------------------------CCceEEEEEECCCCCEEEEEecCCCCceE
Confidence 2577777776542 1111110 1112456678887 444433 23468
Q ss_pred EEEeccCCCCcceeeEEEe-cCc-ceEEEEecCCcee-EecccceeeeeC----CCeEEEEECCCceEEEE-eecCCC--
Q 041206 188 SVWKGTFVANPFKQVASIR-APL-WFCSLSSSNDTRW-NSKEEAAVFEFC----GHTTRTWNLDNLECVQT-LKGHSD-- 257 (371)
Q Consensus 188 ~iwd~~~~~~~~~~~~~~~-~~~-~v~~~~~~~~~~l-~~~~~~~~~~~~----dg~i~iwd~~~~~~~~~-~~~~~~-- 257 (371)
.++|+.++.... .+..+. ... ...++.|+.++.| +.. .. ...|..+|+.+...... +-.+..
T Consensus 298 ~~~d~~~~~~~~-~~~~l~~~~~~~~~s~~~~~g~~l~~~t-------~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~ 369 (751)
T 2xe4_A 298 HLLDLRKGNAHN-TLEIVRPREKGVRYDVQMHGTSHLVILT-------NEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDV 369 (751)
T ss_dssp EEEESSSCTTCC-CEEESSCCCTTCCEEEEEETTTEEEEEE-------CTTTCTTCEEEEEETTSTTCCCCEEECCCSSE
T ss_pred EEEECCCCCCCc-eeEEeecCCCCceEEEeeeeCCEEEEEe-------CCCCCCCcEEEEEcCCCcccceeeEECCCCCc
Confidence 888887752111 002222 223 4555665555554 333 22 24788888875211122 223333
Q ss_pred cEEEEEEcCC-eEEEEeCCCcEEEEE
Q 041206 258 TVTSLLFWDE-YLFSSSLDETIKIWL 282 (371)
Q Consensus 258 ~v~~~~~~~~-~l~s~~~dg~i~iwd 282 (371)
.+..+.+.++ ++++...++..++|-
T Consensus 370 ~l~~~~~~~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 370 FMESIAVRSNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp EEEEEEECSSEEEEEEEETTEEEEEE
T ss_pred EEEEEEEECCEEEEEEEeCCEEEEEE
Confidence 4566666654 556666777655543
No 292
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.91 E-value=0.33 Score=46.75 Aligned_cols=191 Identities=8% Similarity=-0.045 Sum_probs=104.8
Q ss_pred CeeEEEEeCC--E-EEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc-e-eEecccceeeeeCCCeEEE
Q 041206 167 SVNALVVNND--L-LFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT-R-WNSKEEAAVFEFCGHTTRT 240 (371)
Q Consensus 167 ~v~~~~~~~~--~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~-l~~~~~~~~~~~~dg~i~i 240 (371)
.+.++++++. . +++-...+.|+.+++............+.... ....|++.+.+ + +++- ...+.|.+
T Consensus 425 ~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD-------~~~~~I~v 497 (791)
T 3m0c_C 425 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD-------SVLGTVSV 497 (791)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEE-------TTTTEEEE
T ss_pred ceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEe-------cCCCeEEE
Confidence 4677888763 4 44444567888888765311001122222222 66778888765 4 4455 66789999
Q ss_pred EECCCceEEEEeecCCCcEEEEEEc--CCeEEEEe-C-CCcEEEEEccCCCCcce----ecceEEE-EecCCCCEEEEec
Q 041206 241 WNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSS-L-DETIKIWLYTHTKNNAE----LSSLFGM-LDAEAKPVLFSSG 311 (371)
Q Consensus 241 wd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~-~-dg~i~iwd~~~~~~~~~----~~~~~~~-~~~~~~~~l~~~~ 311 (371)
.++........+.........|+++ ..+|+... . .+.|...++........ +.....+ ..+..+.++++=.
T Consensus 498 ~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~ 577 (791)
T 3m0c_C 498 ADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS 577 (791)
T ss_dssp EETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred EeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC
Confidence 9998655444444444567888887 24444433 2 26777777654332111 1122333 3445554555556
Q ss_pred CCCeEEEEEcCCcceeeeecC---CceEEEEEeCCCCeEEeeCCCCcEEEEEcccc
Q 041206 312 KDSAIRLYELPSFKLRARIFS---RREVEVDQIGPAGLFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 312 ~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~~~ 364 (371)
..+.|..+++........+.. -....+|++..+.++++-...+.|...+..++
T Consensus 578 ~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 578 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred CCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCC
Confidence 677899999865433322221 22345677643335566666777877775444
No 293
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.83 E-value=0.19 Score=42.79 Aligned_cols=142 Identities=14% Similarity=0.083 Sum_probs=74.3
Q ss_pred CeeEEEEeCC-EEEEEeCCCeEEE-EeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEEC
Q 041206 167 SVNALVVNND-LLFAGSEGGVISV-WKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNL 243 (371)
Q Consensus 167 ~v~~~~~~~~-~l~~~~~dg~v~i-wd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~ 243 (371)
.+..+.+.++ .++..+.+|.+.. .|-. + ..++.+. .... .+..+.+.+++.++.. +.+|.+++.+.
T Consensus 164 ~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G-~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-------~~~G~~~~s~~ 232 (327)
T 2xbg_A 164 VMRNLNRSPSGEYVAVSSRGSFYSTWEPG-Q-TAWEPHN--RTTSRRLHNMGFTPDGRLWMI-------VNGGKIAFSDP 232 (327)
T ss_dssp CEEEEEECTTSCEEEEETTSSEEEEECTT-C-SSCEEEE--CCSSSCEEEEEECTTSCEEEE-------ETTTEEEEEET
T ss_pred ceEEEEEcCCCcEEEEECCCcEEEEeCCC-C-CceeECC--CCCCCccceeEECCCCCEEEE-------eCCceEEEecC
Confidence 4677777766 4444445555443 3321 1 1123331 1233 7888999998887777 77888877753
Q ss_pred CCceEEEEeec----CCCcEEEEEEc-CCeEEEEeCCCcEEEEEccCCCC----c---ceecceEEEEecCCCCEEEEec
Q 041206 244 DNLECVQTLKG----HSDTVTSLLFW-DEYLFSSSLDETIKIWLYTHTKN----N---AELSSLFGMLDAEAKPVLFSSG 311 (371)
Q Consensus 244 ~~~~~~~~~~~----~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~----~---~~~~~~~~~~~~~~~~~l~~~~ 311 (371)
..++.-..+.. +...+.++.+. +..++.++.++.+. +.....+. . .....+..+.+.+++ .+++++
T Consensus 233 D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~-~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G 310 (327)
T 2xbg_A 233 DNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALL-CSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILG 310 (327)
T ss_dssp TEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEE-EESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEEC
T ss_pred CCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeEE-EeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEc
Confidence 33433222221 22358888887 44555555677663 33221111 0 000122223232333 566777
Q ss_pred CCCeEEEEEc
Q 041206 312 KDSAIRLYEL 321 (371)
Q Consensus 312 ~d~~i~iwd~ 321 (371)
.+|.|.-++-
T Consensus 311 ~~G~i~~~~~ 320 (327)
T 2xbg_A 311 QKGILLRYVT 320 (327)
T ss_dssp STTEEEEECC
T ss_pred CCceEEEEcC
Confidence 8888776654
No 294
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.80 E-value=0.34 Score=45.37 Aligned_cols=187 Identities=7% Similarity=-0.062 Sum_probs=107.5
Q ss_pred CeeEEEEeCC--EE-EEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCC-cee-EecccceeeeeCCCeEEE
Q 041206 167 SVNALVVNND--LL-FAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSND-TRW-NSKEEAAVFEFCGHTTRT 240 (371)
Q Consensus 167 ~v~~~~~~~~--~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~-~~l-~~~~~~~~~~~~dg~i~i 240 (371)
.+..++|++. .+ ++-..++.|..+++... .....+.... ....+++.+. ++| ++- ...+.|.+
T Consensus 38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~----~~~~v~~~g~~~P~GlAvD~~~~~LY~tD-------~~~~~I~v 106 (628)
T 4a0p_A 38 EASALDFDVTDNRIYWTDISLKTISRAFMNGS----ALEHVVEFGLDYPEGMAVDWLGKNLYWAD-------TGTNRIEV 106 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSC----SCEEEECSSCSCCCEEEEETTTTEEEEEE-------TTTTEEEE
T ss_pred ceEEEEEECCCCEEEEEECCCCeEEEEECCCC----CcEEEEeCCCCCcceEEEEeCCCEEEEEE-------CCCCEEEE
Confidence 3678888875 44 44455788888888754 2222222222 5677888764 344 454 56788999
Q ss_pred EECCCceEEEEeecCCCcEEEEEEcC--CeEEEEe--CCCcEEEEEccCCCCcce---ecceEEE-EecCCCCEEEEecC
Q 041206 241 WNLDNLECVQTLKGHSDTVTSLLFWD--EYLFSSS--LDETIKIWLYTHTKNNAE---LSSLFGM-LDAEAKPVLFSSGK 312 (371)
Q Consensus 241 wd~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~--~dg~i~iwd~~~~~~~~~---~~~~~~~-~~~~~~~~l~~~~~ 312 (371)
.++........+...-.....+++++ .+|+... ..+.|...++........ +.....+ ..+.++++.++=..
T Consensus 107 ~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~ 186 (628)
T 4a0p_A 107 SKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLD 186 (628)
T ss_dssp EETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETT
T ss_pred EecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECC
Confidence 99875433222223344567888872 3444443 245666666554432211 1122233 44445645566667
Q ss_pred CCeEEEEEcCCcceeeeecCCceEEEEEeCCCCeEEeeCCCCcEEEEEcccc
Q 041206 313 DSAIRLYELPSFKLRARIFSRREVEVDQIGPAGLFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 313 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~~~ 364 (371)
.+.|..+|+.................+++..+..+++-...+.|...|..++
T Consensus 187 ~~~I~~~d~dG~~~~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 187 TNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp TTEEEEEETTSCSCEEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred CCEEEEEcCCCCceEEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCC
Confidence 7899999987643321111233456777765336666667788888886554
No 295
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.80 E-value=0.19 Score=42.45 Aligned_cols=151 Identities=5% Similarity=-0.040 Sum_probs=93.6
Q ss_pred EecCc-ceEEEEecC-CceeEecccceeeee-CCCeEEEEECCCceEEEE-eec----CC--CcEEEEEE---c-C-CeE
Q 041206 205 IRAPL-WFCSLSSSN-DTRWNSKEEAAVFEF-CGHTTRTWNLDNLECVQT-LKG----HS--DTVTSLLF---W-D-EYL 269 (371)
Q Consensus 205 ~~~~~-~v~~~~~~~-~~~l~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~-~~~----~~--~~v~~~~~---~-~-~~l 269 (371)
+.... ...++.|.+ +++++.+ + ..++|..||...+..... +.+ .. ..+..+.+ . . .++
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs-------~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~ 80 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQS-------NLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLF 80 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEE-------ETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEE
T ss_pred ecCcccCCcCccCcCCCCEEEEE-------eccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEE
Confidence 44444 567888977 4566555 5 789999999986544332 322 11 14578999 4 3 344
Q ss_pred EEEe-------------CCCcEEEEEcc---CCCCcce-----------------ecceEEEEecCCCCEEEEecCC-Ce
Q 041206 270 FSSS-------------LDETIKIWLYT---HTKNNAE-----------------LSSLFGMLDAEAKPVLFSSGKD-SA 315 (371)
Q Consensus 270 ~s~~-------------~dg~i~iwd~~---~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~~~d-~~ 315 (371)
++.. .+..+..||+. +.+.... ......+...+.++..++++.. +.
T Consensus 81 vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~ 160 (334)
T 2p9w_A 81 AVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA 160 (334)
T ss_dssp EEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE
T ss_pred EEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe
Confidence 4332 15779999988 5543211 1124445555666677777777 88
Q ss_pred EEEEEcCCcceeeeec-C------CceEEEEEeCCCC-eEEeeCCCCcEEEEEccc
Q 041206 316 IRLYELPSFKLRARIF-S------RREVEVDQIGPAG-LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 316 i~iwd~~~~~~~~~~~-~------~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~ 363 (371)
|..++...... ..+. . .-..+.|+++|+| .|++....|.|..+|+..
T Consensus 161 I~rV~pdG~~~-~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 161 IARVSADGKTV-STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEECTTSCCE-EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EEEEeCCCCEE-eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 87777765422 2221 1 1236799999999 555555599999999774
No 296
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.66 E-value=0.25 Score=41.83 Aligned_cols=195 Identities=14% Similarity=0.032 Sum_probs=110.3
Q ss_pred cCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCC----ceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeE
Q 041206 96 KKAVTNVGLPSGSNKLY-SGSRDGRVSVWDRDSG----RCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNA 170 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~ 170 (371)
-..+.+++|++.+..|+ +-...+.|..++.... .....+.. .-.....
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~---------------------------~~~~p~g 81 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---------------------------DIQAPDG 81 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS---------------------------SCSCCCE
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC---------------------------CCCCcCE
Confidence 45678999998655554 4455688999987751 11111111 1113567
Q ss_pred EEEeCC--EE-EEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCC-ceeEecccceeeeeC-C-CeEEEEEC
Q 041206 171 LVVNND--LL-FAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSND-TRWNSKEEAAVFEFC-G-HTTRTWNL 243 (371)
Q Consensus 171 ~~~~~~--~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~-~~l~~~~~~~~~~~~-d-g~i~iwd~ 243 (371)
+++++. .| ++-...+.|.++++... .....+.... ....+++.|. +.++.+ .. . +.|...++
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~----~~~~~~~~~~~~P~~iavdp~~g~ly~~-------d~~~~~~I~~~~~ 150 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGV----KRKTLFRENGSKPRAIVVDPVHGFMYWT-------DWGTPAKIKKGGL 150 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSS----SEEEEEECTTCCEEEEEEETTTTEEEEE-------ECSSSCEEEEEET
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCC----ceEEEEECCCCCcceEEeCCCCCEEEEE-------ccCCCCeEEEEcC
Confidence 777642 44 44456788999988754 2222223222 7789999984 455444 33 3 78888888
Q ss_pred CCceEEEEe-ecCCCcEEEEEEc--CCeE-EEEeCCCcEEEEEccCCCCcce------ecceEEEEecCCCCEEEEecCC
Q 041206 244 DNLECVQTL-KGHSDTVTSLLFW--DEYL-FSSSLDETIKIWLYTHTKNNAE------LSSLFGMLDAEAKPVLFSSGKD 313 (371)
Q Consensus 244 ~~~~~~~~~-~~~~~~v~~~~~~--~~~l-~s~~~dg~i~iwd~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~d 313 (371)
... ....+ ...-.....++++ +..| ++-+..+.|..+|+........ ......+... ++.++++-...
T Consensus 151 dG~-~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~ 228 (316)
T 1ijq_A 151 NGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIIN 228 (316)
T ss_dssp TSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTT
T ss_pred CCC-CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCC
Confidence 643 32333 2233456788887 3444 4555667899999764322111 1111222232 34466666777
Q ss_pred CeEEEEEcCCcceeeee
Q 041206 314 SAIRLYELPSFKLRARI 330 (371)
Q Consensus 314 ~~i~iwd~~~~~~~~~~ 330 (371)
+.|..++..+++.+..+
T Consensus 229 ~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 229 EAIFSANRLTGSDVNLL 245 (316)
T ss_dssp TEEEEEETTTCCCCEEE
T ss_pred CeEEEEeCCCCcceEEE
Confidence 88999998776654444
No 297
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.54 E-value=0.022 Score=54.16 Aligned_cols=196 Identities=12% Similarity=0.033 Sum_probs=105.2
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCC----ceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEE
Q 041206 97 KAVTNVGLPSGSNKLYSGS-RDGRVSVWDRDSG----RCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNAL 171 (371)
Q Consensus 97 ~~V~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~ 171 (371)
..+..++|++.+..|+.+. ..+.|+.+++... .....+.. .-.....|
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~---------------------------~~~~P~gl 458 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---------------------------DIQAPDGL 458 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS---------------------------CC--CCCE
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC---------------------------CCCCcceE
Confidence 3466788888666665553 5577888887641 11111110 00123455
Q ss_pred EEeC--C-EEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc-eeEecccceeeee-C-CCeEEEEECC
Q 041206 172 VVNN--D-LLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT-RWNSKEEAAVFEF-C-GHTTRTWNLD 244 (371)
Q Consensus 172 ~~~~--~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~l~~~~~~~~~~~-~-dg~i~iwd~~ 244 (371)
++++ . ++++-...+.|.++++... .....+.... ....+++.|.+ .|+.+ . . .+.|..+++.
T Consensus 459 avD~~~g~LY~tD~~~~~I~v~d~dg~----~~~~l~~~~~~~P~giavDp~~g~ly~t-------d~~~~~~I~~~~~d 527 (699)
T 1n7d_A 459 AVDWIHSNIYWTDSVLGTVSVADTKGV----KRKTLFREQGSKPRAIVVDPVHGFMYWT-------DWGTPAKIKKGGLN 527 (699)
T ss_dssp ECCCSSSBCEECCTTTSCEEEEBSSSC----CEEEECCCSSCCCCCEECCSSSSCCEEC-------CCSSSCCEEBCCSS
T ss_pred EEEeeCCcEEEEeccCCeEEEEecCCC----ceEEEEeCCCCCcceEEEccCCCcEEEc-------ccCCCCeEEEEeCC
Confidence 6653 2 3344345678888887754 2222222222 56788898854 55444 3 2 2678887775
Q ss_pred CceEEEEeecCCCcEEEEEEc---CCeEEEEeCCCcEEEEEccCCCCccee------cceEEEEecCCCCEEEEecCCCe
Q 041206 245 NLECVQTLKGHSDTVTSLLFW---DEYLFSSSLDETIKIWLYTHTKNNAEL------SSLFGMLDAEAKPVLFSSGKDSA 315 (371)
Q Consensus 245 ~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~d~~ 315 (371)
.......+...-.....|+++ +.++++-+..+.|..+++........+ .....+... ...++++....+.
T Consensus 528 G~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd-~~~lywtd~~~~~ 606 (699)
T 1n7d_A 528 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA 606 (699)
T ss_dssp SCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEE-TTEEEEECSTTTC
T ss_pred CCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEE-CCEEEEEeCCCCe
Confidence 432211122222345678887 345555566778999987543221111 000111111 2346667677789
Q ss_pred EEEEEcCCcceeeeec
Q 041206 316 IRLYELPSFKLRARIF 331 (371)
Q Consensus 316 i~iwd~~~~~~~~~~~ 331 (371)
|..++..+++.+..+.
T Consensus 607 V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 607 IFSANRLTGSDVNLLA 622 (699)
T ss_dssp EEEEETTTEEEEECCC
T ss_pred EEEEEccCCCceEEee
Confidence 9999988877666554
No 298
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.34 E-value=0.37 Score=42.84 Aligned_cols=145 Identities=7% Similarity=-0.011 Sum_probs=84.8
Q ss_pred ceEEEEecCC---ceeEecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEEEEeCC---Cc-EEE
Q 041206 210 WFCSLSSSND---TRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLFSSSLD---ET-IKI 280 (371)
Q Consensus 210 ~v~~~~~~~~---~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~-i~i 280 (371)
....++++|+ +.|+.+ ...+.|+.+|+.+++..... ........++++ ++++++.... .. +..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~-------D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~ 211 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWV-------GQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYL 211 (433)
T ss_dssp CCCEEEECTTTTTCEEEEE-------CBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEE
T ss_pred CCceEEEccccCCCEEEEE-------eCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEE
Confidence 4568899985 676666 44489999999887765443 344567899998 5644443321 11 333
Q ss_pred EEccCCCCc-c---eecceEEE-EecCCCCEEEEecCCCeEEEEEcCCcceeeeec---CCceEEEEEeCCCC--eEEee
Q 041206 281 WLYTHTKNN-A---ELSSLFGM-LDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF---SRREVEVDQIGPAG--LFFPG 350 (371)
Q Consensus 281 wd~~~~~~~-~---~~~~~~~~-~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~s~~~--~l~~~ 350 (371)
.+....... . .......+ ..+.++.+.++-..++.|+.+|..++.....+. ....-..++|+|++ ++++-
T Consensus 212 ~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 212 FTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp ECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred EECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence 332211110 0 01111112 333356566666677889999998766522222 12233579999999 45555
Q ss_pred CCCCcEEEEEcc
Q 041206 351 DASGSVGVWKWL 362 (371)
Q Consensus 351 ~~dg~i~iw~~~ 362 (371)
...+.|+.+++.
T Consensus 292 ~~~~~I~~~~~d 303 (433)
T 4hw6_A 292 NGKHCIYRVDYN 303 (433)
T ss_dssp TTTTEEEEEEBC
T ss_pred CCCCEEEEEeCC
Confidence 567889998865
No 299
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.33 E-value=0.45 Score=40.99 Aligned_cols=104 Identities=11% Similarity=0.085 Sum_probs=56.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCC
Q 041206 97 KAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNND 176 (371)
Q Consensus 97 ~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~ 176 (371)
.....++|.|+|+++++ ..+|.|++++ +++........ + +.-.......++++|+
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~--v--------------------~~~g~~~p~gia~~pd 85 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELS--V--------------------YHRGESGLLGLALHPR 85 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECC--C--------------------CCSTTCSEEEEEECTT
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecce--E--------------------eecCCCCceeEEECCC
Confidence 45679999999985555 5669999998 44422111110 0 0001224677888875
Q ss_pred -----EEEEEeCC------CeEEEEeccCCCC-cce-eeEEEe---cCc-ceEEEEecCCceeEec
Q 041206 177 -----LLFAGSEG------GVISVWKGTFVAN-PFK-QVASIR---APL-WFCSLSSSNDTRWNSK 225 (371)
Q Consensus 177 -----~l~~~~~d------g~v~iwd~~~~~~-~~~-~~~~~~---~~~-~v~~~~~~~~~~l~~~ 225 (371)
.|+++... +.|..++.....- ..+ .+..+. ... ....++|.|||.|+.+
T Consensus 86 f~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~ 151 (352)
T 2ism_A 86 FPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVT 151 (352)
T ss_dssp TTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEE
T ss_pred CCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEE
Confidence 55444332 5677777653210 001 122233 111 3468999999985443
No 300
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.25 E-value=0.9 Score=43.65 Aligned_cols=245 Identities=10% Similarity=0.125 Sum_probs=139.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC------CCeeEEEeec--CCEEEEecCCcEEEEEeCCC--
Q 041206 97 KAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN------GAEIGCLISE--GSWVFLGLPNAVKSWRVNAA-- 166 (371)
Q Consensus 97 ~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~------~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~-- 166 (371)
..|.++...+++.+.+ |+.+| |..++..+++....... ...+.++..+ +..+..+.++.+..++..++
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~~~~~ 223 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEGYLFQYFPSTGQI 223 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEEEEEEEETTTTEE
T ss_pred CeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEECCCCeEEcCCCCeE
Confidence 4688888887776655 44444 88888777654322111 1225666654 45454444556777776554
Q ss_pred ---------CeeEEEEeCC-EEEEEeCCCeEEEEeccCCCCcceeeEEEe--------cCc-ceEEEEecCCceeEeccc
Q 041206 167 ---------SVNALVVNND-LLFAGSEGGVISVWKGTFVANPFKQVASIR--------APL-WFCSLSSSNDTRWNSKEE 227 (371)
Q Consensus 167 ---------~v~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--------~~~-~v~~~~~~~~~~l~~~~~ 227 (371)
.|.++..+.+ .|..|+. +-+.+++..+.. +..+. -.. .|.++....++.+..|
T Consensus 224 ~~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~~~-----~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiG-- 295 (758)
T 3ott_A 224 KQTEAFHNNSIKSLALDGNGDLLAGTD-NGLYVYHNDTTP-----LQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLG-- 295 (758)
T ss_dssp EEEEEEEEEEEEEEEECTTCCEEEEET-TEEEEECCTTSC-----CEEECCCTTCTTSCSCSCEEEEEECTTCCEEEE--
T ss_pred EeccCCCCCeEEEEEEcCCCCEEEEeC-CceeEEecCCCc-----EEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEE--
Confidence 3556666655 6667774 568888876641 11221 112 6889998888888888
Q ss_pred ceeeeeCCCeEEEEECCCceEEEEee-------cCCCcEEEEEEc-CCeEEEEeCCCcEEEEEccCCCC-----------
Q 041206 228 AAVFEFCGHTTRTWNLDNLECVQTLK-------GHSDTVTSLLFW-DEYLFSSSLDETIKIWLYTHTKN----------- 288 (371)
Q Consensus 228 ~~~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~----------- 288 (371)
+..| +.++.... ....+. .....|.++... ...|..|+.+| +..++......
T Consensus 296 -----T~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~ 366 (758)
T 3ott_A 296 -----TDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDK 366 (758)
T ss_dssp -----ESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCS
T ss_pred -----eCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccCCc
Confidence 7767 54443321 111111 123468888776 45666666655 55555432110
Q ss_pred cc--eecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec-------CCceEEEEEeCCCCeEEeeCCCCcEEEE
Q 041206 289 NA--ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-------SRREVEVDQIGPAGLFFPGDASGSVGVW 359 (371)
Q Consensus 289 ~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~v~~~~~s~~~~l~~~~~dg~i~iw 359 (371)
.. ....+..+.....+ .|..|. ++-+..||..+++...-.. ....|.++...++|.|..|+..+-|.++
T Consensus 367 ~~~l~~~~v~~i~~d~~g-~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~ 444 (758)
T 3ott_A 367 TYPLSHNRIRHIYEDKEQ-QLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVV 444 (758)
T ss_dssp SSCCSCSCEEEEEECTTS-CEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEE
T ss_pred CCCCCCCceEEEEECCCC-CEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEE
Confidence 00 11124444444444 455555 4579999988765432211 1345888888888855556666667777
Q ss_pred Ecc
Q 041206 360 KWL 362 (371)
Q Consensus 360 ~~~ 362 (371)
+..
T Consensus 445 ~~~ 447 (758)
T 3ott_A 445 DKH 447 (758)
T ss_dssp EHH
T ss_pred ccc
Confidence 754
No 301
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.24 E-value=0.47 Score=40.34 Aligned_cols=248 Identities=10% Similarity=0.056 Sum_probs=127.6
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE--e---CCCeeEEEeecC-CEEEEecCCcEEE-------EE
Q 041206 96 KKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVI--T---NGAEIGCLISEG-SWVFLGLPNAVKS-------WR 162 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~---~~~~~~~~~~~~-~~~~~~~~~~i~~-------~~ 162 (371)
...+.++.|.+++..++. +.+|.| +...+.|+.=... . ....+..+.+++ ..++++..+.+.. |.
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~S~DgG~tW~ 112 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLHTTDGGQSWS 112 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEEESSTTSSCE
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEEECCCCCCce
Confidence 357999999877777774 556755 3334444321111 1 123455555543 3334444443322 33
Q ss_pred eCC------CCeeEEEEeC-CEEEEEeCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeC
Q 041206 163 VNA------ASVNALVVNN-DLLFAGSEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFC 234 (371)
Q Consensus 163 ~~~------~~v~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~ 234 (371)
... +.+..+.+.+ ..++.++.+|.| |....+...++.+. .... .+..+++.+++.++.. +.
T Consensus 113 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v--~~S~DgG~tW~~~~--~~~~~~~~~~~~~~~~~~~~~-------g~ 181 (327)
T 2xbg_A 113 QIPLDPKLPGSPRLIKALGNGSAEMITNVGAI--YRTKDSGKNWQALV--QEAIGVMRNLNRSPSGEYVAV-------SS 181 (327)
T ss_dssp ECCCCTTCSSCEEEEEEEETTEEEEEETTCCE--EEESSTTSSEEEEE--CSCCCCEEEEEECTTSCEEEE-------ET
T ss_pred ECccccCCCCCeEEEEEECCCCEEEEeCCccE--EEEcCCCCCCEEee--cCCCcceEEEEEcCCCcEEEE-------EC
Confidence 211 2466776644 455555556654 32232222223222 2333 7888999998875555 55
Q ss_pred CCeEEE-EEC--CCceEEEEeecCCCcEEEEEEc-CCeEEEEeCCCcEEEEEcc------CCCCc--ceecceEEEEecC
Q 041206 235 GHTTRT-WNL--DNLECVQTLKGHSDTVTSLLFW-DEYLFSSSLDETIKIWLYT------HTKNN--AELSSLFGMLDAE 302 (371)
Q Consensus 235 dg~i~i-wd~--~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~------~~~~~--~~~~~~~~~~~~~ 302 (371)
+|.++. .|- .+.+.+. ......+..+.+. +..++..+.+|.+++.+.. ..... .....+..+...+
T Consensus 182 ~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~ 259 (327)
T 2xbg_A 182 RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT 259 (327)
T ss_dssp TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS
T ss_pred CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC
Confidence 555544 342 3334432 2345678888887 4456666778887776311 00000 0111234444444
Q ss_pred CCCEEEEecCCCeEEEEEcCCcceeeeec----CCceEEEEEeCCCCeEEeeCCCCcEEEEE
Q 041206 303 AKPVLFSSGKDSAIRLYELPSFKLRARIF----SRREVEVDQIGPAGLFFPGDASGSVGVWK 360 (371)
Q Consensus 303 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~s~~~~l~~~~~dg~i~iw~ 360 (371)
.+.+++++ .++.| .+....++.-..+. ....+.++.|.+++.+++++.+|.|.-++
T Consensus 260 ~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 260 PNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV 319 (327)
T ss_dssp SSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred CCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence 45455554 46666 34444443222222 13567888887666666677889776554
No 302
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.21 E-value=0.47 Score=40.15 Aligned_cols=181 Identities=12% Similarity=0.082 Sum_probs=105.1
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceE-EEEeC-CCeeEEEe--ecCCEE-EEe-cCCcEEEEEeCCC---
Q 041206 97 KAVTNVGLPSGS-NKLYSGSRDGRVSVWDRDSGRCV-NVITN-GAEIGCLI--SEGSWV-FLG-LPNAVKSWRVNAA--- 166 (371)
Q Consensus 97 ~~V~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~-~~~~~-~~~~~~~~--~~~~~~-~~~-~~~~i~~~~~~~~--- 166 (371)
..+.+++|++.+ .++.+-...+.|..++...+... ..+.. -.....+. +.+..+ ++. ..+.|.++++...
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence 356789999854 44555556788999998766321 11111 11222233 223333 332 3567777776543
Q ss_pred --------CeeEEEEeCC--EEEEEe--CCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc-ee-Eecccceee
Q 041206 167 --------SVNALVVNND--LLFAGS--EGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT-RW-NSKEEAAVF 231 (371)
Q Consensus 167 --------~v~~~~~~~~--~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~l-~~~~~~~~~ 231 (371)
....++++|. .++... ..+.|...++... .........- ..+.+++++++ +| ++-
T Consensus 115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~----~~~~~~~~~l~~Pnglavd~~~~~lY~aD------ 184 (318)
T 3sov_A 115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS----SRFIIINSEIYWPNGLTLDYEEQKLYWAD------ 184 (318)
T ss_dssp EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC----SCEEEECSSCSCEEEEEEETTTTEEEEEE------
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC----CeEEEEECCCCCccEEEEeccCCEEEEEE------
Confidence 4567788864 555554 2577888887643 1111122222 67899999854 54 444
Q ss_pred eeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc-CCeEEEEeCCCcEEEEEccCCCC
Q 041206 232 EFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW-DEYLFSSSLDETIKIWLYTHTKN 288 (371)
Q Consensus 232 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~ 288 (371)
+..+.|..+|+........+.+.......+++. +..+++-...+.|..++....+.
T Consensus 185 -~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 185 -AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp -TTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCS
T ss_pred -CCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCc
Confidence 567899999987433322223234455677777 45556666678888888755543
No 303
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.14 E-value=0.45 Score=42.92 Aligned_cols=147 Identities=12% Similarity=-0.044 Sum_probs=87.9
Q ss_pred ceEEEEecCC--ceeEecccceeeeeCCCeEEEEECCCceEEEEeecC---CCcEEEEEE-------c--CCeEEEEeCC
Q 041206 210 WFCSLSSSND--TRWNSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGH---SDTVTSLLF-------W--DEYLFSSSLD 275 (371)
Q Consensus 210 ~v~~~~~~~~--~~l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~-------~--~~~l~s~~~d 275 (371)
....|++.|. ++|+.+. ...+.|++.|+.++.....+... ......++| + +++|+.+...
T Consensus 140 ~p~~la~dp~~~~~Lyv~~------~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~ 213 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICY------DGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDY 213 (496)
T ss_dssp SEEEEEEETTEEEEEEEEE------ETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECC
T ss_pred CCCEEEEccCCCCEEEEEE------CCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCC
Confidence 4678899984 4555540 33467999999987765544322 235789999 6 5656555544
Q ss_pred C-c------EEEEEccC-CCCc-----cee----cceEEEEecCCCCEEEEecCCCeEEEEEcC-------Ccce-----
Q 041206 276 E-T------IKIWLYTH-TKNN-----AEL----SSLFGMLDAEAKPVLFSSGKDSAIRLYELP-------SFKL----- 326 (371)
Q Consensus 276 g-~------i~iwd~~~-~~~~-----~~~----~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~-------~~~~----- 326 (371)
+ . +.+++... ..-. ..+ .+......+.++.++++-..++.|..+|+. ++..
T Consensus 214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~ 293 (496)
T 3kya_A 214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV 293 (496)
T ss_dssp CTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred CCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc
Confidence 3 2 55555222 0111 011 111122444466677777788899999987 4443
Q ss_pred ---------eeeecCCceEEEEEeCCCC-e-EEeeCCCCcEEEEEcc
Q 041206 327 ---------RARIFSRREVEVDQIGPAG-L-FFPGDASGSVGVWKWL 362 (371)
Q Consensus 327 ---------~~~~~~~~~v~~~~~s~~~-~-l~~~~~dg~i~iw~~~ 362 (371)
+...........++|+|+| . +++-.....|+.++..
T Consensus 294 ~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 294 KNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp GGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 1122223456899999999 4 5555667788887654
No 304
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.94 E-value=1.7 Score=43.97 Aligned_cols=129 Identities=12% Similarity=0.105 Sum_probs=78.3
Q ss_pred CCCeEEEEECCCceEEEEe-ecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCCcce----ecceEEEEecCCCCEEE
Q 041206 234 CGHTTRTWNLDNLECVQTL-KGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKNNAE----LSSLFGMLDAEAKPVLF 308 (371)
Q Consensus 234 ~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~l~ 308 (371)
..|.|++|++..++..... ....+++++++--+.+|+++ ...++++|++...+.... ...+........+.+++
T Consensus 862 ~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~g~Lla~-ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~ 940 (1158)
T 3ei3_A 862 KQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLAS-INSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFIL 940 (1158)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEESSCEEEEEEETTEEEEE-ETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEE
T ss_pred CceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeCCEEEEE-cCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEE
Confidence 4689999998754432211 12467899987554455554 347899999876542110 00011101111234788
Q ss_pred EecCCCeEEEEEcC--Cccee--eeecCCceEEEEEeCCCCeEEeeCCCCcEEEEEccc
Q 041206 309 SSGKDSAIRLYELP--SFKLR--ARIFSRREVEVDQIGPAGLFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 309 ~~~~d~~i~iwd~~--~~~~~--~~~~~~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~~ 363 (371)
+|..-..|.++..+ ..++. ..-.....++++.+-.++.++.+..+|.|.+.....
T Consensus 941 vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 941 VGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECT
T ss_pred EEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEecCC
Confidence 88777777775543 33222 222246678888887666778899999999998865
No 305
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.90 E-value=0.62 Score=38.80 Aligned_cols=177 Identities=9% Similarity=0.043 Sum_probs=87.4
Q ss_pred EEEEEeCC-----CeEEEEeccCCCC-cceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeC-----CCeEEEEEC
Q 041206 177 LLFAGSEG-----GVISVWKGTFVAN-PFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFC-----GHTTRTWNL 243 (371)
Q Consensus 177 ~l~~~~~d-----g~v~iwd~~~~~~-~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~-----dg~i~iwd~ 243 (371)
.++.|+.+ ..+.+||+.+... .++.+..+.... ....+.. +++ ++.| +. ...+.+||+
T Consensus 65 l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~G-------G~~~~~~~~~~~~~d~ 135 (301)
T 2vpj_A 65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSG-------GFDGSRRHTSMERYDP 135 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEEC-------CBCSSCBCCEEEEEET
T ss_pred EEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEc-------ccCCCcccceEEEEcC
Confidence 55555543 4688888877630 023332222222 2222222 455 4555 33 346899999
Q ss_pred CCceEEE--EeecCCCcEEEEEEcCCeEEEEeCC-----CcEEEEEccCCCC------cceecceEEEEecCCCCEEEEe
Q 041206 244 DNLECVQ--TLKGHSDTVTSLLFWDEYLFSSSLD-----ETIKIWLYTHTKN------NAELSSLFGMLDAEAKPVLFSS 310 (371)
Q Consensus 244 ~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~l~~~ 310 (371)
.+.+-.. .+......-..+.+.+..++.|+.+ ..+.+||+....= ......... ... ++.+++.|
T Consensus 136 ~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~-~~~-~~~i~v~G 213 (301)
T 2vpj_A 136 NIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGV-ALL-NDHIYVVG 213 (301)
T ss_dssp TTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEE-EEE-TTEEEEEC
T ss_pred CCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceE-EEE-CCEEEEEe
Confidence 8765432 2222222223333446666666654 4588888654331 111111121 222 33467777
Q ss_pred cCC-----CeEEEEEcCCcce--eeeecC-CceEEEEEeCCCC-eEEeeCCC-----CcEEEEEccccce
Q 041206 311 GKD-----SAIRLYELPSFKL--RARIFS-RREVEVDQIGPAG-LFFPGDAS-----GSVGVWKWLLAEQ 366 (371)
Q Consensus 311 ~~d-----~~i~iwd~~~~~~--~~~~~~-~~~v~~~~~s~~~-~l~~~~~d-----g~i~iw~~~~~~~ 366 (371)
+.+ ..+.+||+.+.+- +..+.. ......+.+ ++ +++.|+.+ ..+.+||+.+.+-
T Consensus 214 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 214 GFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp CBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred CCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 654 4689999987542 222221 111122222 55 66666655 3577888876543
No 306
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.87 E-value=0.68 Score=39.05 Aligned_cols=163 Identities=13% Similarity=0.156 Sum_probs=94.6
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCC----CeeEEEEeCC---EEEEEe
Q 041206 110 KLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAA----SVNALVVNND---LLFAGS 182 (371)
Q Consensus 110 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~v~~~~~~~~---~l~~~~ 182 (371)
.|-+....-.|..|.+-+...+....... +....-. +....++++|.|.. .|.....+++ .+++|-
T Consensus 99 klks~~~~e~VvfWkWis~~~L~lVT~ta-VyHWs~~------~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI 171 (365)
T 2xzh_A 99 KMKAHTMTDDVTFWKWISLNTVALVTDNA-VYHWSME------GESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI 171 (365)
T ss_dssp EEEEEECSSCEEEEEECSSSEEEEEESSE-EEEEESS------TTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEE
T ss_pred hhcceecCCccEEEEecCCCeEEEEcCCc-EEEEccc------CCCCCceeeecchhcccceEEEEEECCCCCEEEEEeE
Confidence 45566656678888887777665544321 1111111 13456777776544 6666677776 333332
Q ss_pred ------CCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc---eeEe-cccceeeeeCCCeEEEEECCCc---e-
Q 041206 183 ------EGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT---RWNS-KEEAAVFEFCGHTTRTWNLDNL---E- 247 (371)
Q Consensus 183 ------~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~---~l~~-~~~~~~~~~~dg~i~iwd~~~~---~- 247 (371)
-.|.+.+|..+.. ..+.+++|. ....+...... .+++ +.. ....+.++|.++... .
T Consensus 172 ~~~~~~v~G~mQLYS~er~-----~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r----~~~g~kLhIiEi~~~~~~~~ 242 (365)
T 2xzh_A 172 SAQQNRVVGAMQLYSVDRK-----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVR----GQAGGKLHIIEVGTPPTGNQ 242 (365)
T ss_dssp EEETTEEEEEEEEEETTTT-----EEEEECCSEEEEEEECCTTCSSCEEEEEEEEE----ETTEEEEEEEECSSCCTTCC
T ss_pred eccCCccceeEEEEeeccc-----ccceeeeeeeeeEEEecCCCCCCceEEEEEEe----cCCCcEEEEEEcCCCCCCCC
Confidence 2377889998874 677888887 55555544322 2333 200 022368999998432 1
Q ss_pred -----EEEEeec---CCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC
Q 041206 248 -----CVQTLKG---HSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN 288 (371)
Q Consensus 248 -----~~~~~~~---~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~ 288 (371)
.+..+-. ..+.--++..+ -..+..-+.-|.|.+||+.+...
T Consensus 243 ~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~ 293 (365)
T 2xzh_A 243 PFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 293 (365)
T ss_dssp CCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred CcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcE
Confidence 1111111 13344466666 45777888999999999988764
No 307
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.32 E-value=1.4 Score=38.74 Aligned_cols=91 Identities=13% Similarity=0.055 Sum_probs=58.7
Q ss_pred CCeEEEEeccCCCCcceeeEEEecC----c-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCce-----------
Q 041206 184 GGVISVWKGTFVANPFKQVASIRAP----L-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLE----------- 247 (371)
Q Consensus 184 dg~v~iwd~~~~~~~~~~~~~~~~~----~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~----------- 247 (371)
++.||.-++.... ..+.+... - .+..+..+|+|.+++- ..+..|.|..+..+.
T Consensus 40 ~n~iR~~~i~~~~----~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl-------~g~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 40 DNIIRWYNVLTDS----LYHSLNFSRHLVLDDTFHVISSTSGDLLCL-------FNDNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTEEEEEETTTCS----SCEEEECTTTCCCCTTCEEEECTTSSEEEE-------ECSSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCEEEEEECCCCC----cceEEecCcccccCceeEEEECCCCCEEEE-------ecCCeEEEEEecCccccCcccccccc
Confidence 4677777776442 22233332 2 6788999999987666 678889998887321
Q ss_pred -EEEEeec------CCCcEEEEEEc-----CCeEEEEeCCCcEEEEEccC
Q 041206 248 -CVQTLKG------HSDTVTSLLFW-----DEYLFSSSLDETIKIWLYTH 285 (371)
Q Consensus 248 -~~~~~~~------~~~~v~~~~~~-----~~~l~s~~~dg~i~iwd~~~ 285 (371)
..+.++- ...+|..+.|+ +..|++-..|+.|++||+..
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 1122221 24567888887 35777777888888888766
No 308
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.28 E-value=2.2 Score=40.92 Aligned_cols=255 Identities=10% Similarity=0.070 Sum_probs=141.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC--------CCeeEEEeec-CCEEEEecCCcEEEEEeC---
Q 041206 97 KAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN--------GAEIGCLISE-GSWVFLGLPNAVKSWRVN--- 164 (371)
Q Consensus 97 ~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~i~~~~~~--- 164 (371)
..|.++...+++.+.+. +.+| +.+++..+++....... ...+.++..+ ...+..+.++.+.++...
T Consensus 232 ~~i~~i~~d~~g~lWig-T~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~Gl~~~~~~~~~ 309 (758)
T 3ott_A 232 NSIKSLALDGNGDLLAG-TDNG-LYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYGISLSRYNSAL 309 (758)
T ss_dssp EEEEEEEECTTCCEEEE-ETTE-EEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSSEEEECCCC-C
T ss_pred CeEEEEEEcCCCCEEEE-eCCc-eeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCcccccccCCce
Confidence 45888888877765544 4444 88888776654332211 2336666654 223333333234332211
Q ss_pred -------------CCCeeEEEEeCC-EEEEEeCCCeEEEEeccCCCCcceeeEEEe-------cCc-ceEEEEecCCcee
Q 041206 165 -------------AASVNALVVNND-LLFAGSEGGVISVWKGTFVANPFKQVASIR-------APL-WFCSLSSSNDTRW 222 (371)
Q Consensus 165 -------------~~~v~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-------~~~-~v~~~~~~~~~~l 222 (371)
...|.++..+.+ .|..|+.+ -+..++..++.. .....+. ... .|.++.-.+++.|
T Consensus 310 ~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~-Gl~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l 386 (758)
T 3ott_A 310 QFIPISQITGTGDGNQFYSLFRDSKGFYWFGGAN-GLIRFTDPAGER--HDAIWYRMGDKTYPLSHNRIRHIYEDKEQQL 386 (758)
T ss_dssp EEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETT-EEEEESCTTSSC--CCCEEECTTCSSSCCSCSCEEEEEECTTSCE
T ss_pred eEEecccCCCCCCCceEEEEEEcCCCCEEEeeCC-cceeeccccccc--ceeEEeccCCcCCCCCCCceEEEEECCCCCE
Confidence 125778877766 67777755 466666554311 1111121 112 6889998888888
Q ss_pred EecccceeeeeCCCeEEEEECCCceEEEEe-ec-----CCCcEEEEEEc-CCeEEEEeCCCcEEEEEccCC-----C---
Q 041206 223 NSKEEAAVFEFCGHTTRTWNLDNLECVQTL-KG-----HSDTVTSLLFW-DEYLFSSSLDETIKIWLYTHT-----K--- 287 (371)
Q Consensus 223 ~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~-~~-----~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~-----~--- 287 (371)
..| + ++-+..+|.++++...-. .. ....|.++... ...|..|+..+-+.++|.... .
T Consensus 387 Wig-------t-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~ 458 (758)
T 3ott_A 387 WIA-------T-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYI 458 (758)
T ss_dssp EEE-------E-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEE
T ss_pred EEE-------e-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCccee
Confidence 888 7 457999999887653221 11 22457888776 567888887766888885420 0
Q ss_pred -------Ccc-eecceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeeec----CCceEEEEEeCCCCeEEeeCCCCc
Q 041206 288 -------NNA-ELSSLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF----SRREVEVDQIGPAGLFFPGDASGS 355 (371)
Q Consensus 288 -------~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~s~~~~l~~~~~dg~ 355 (371)
... ....+..+.....+.+-+.++..+-+..+|..+.+...... ....+.++....+|.|..|+..|
T Consensus 459 ~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~~G- 537 (758)
T 3ott_A 459 AEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGFHGG- 537 (758)
T ss_dssp CSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEETTE-
T ss_pred cccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEecCc-
Confidence 000 00124444444445343323334458888988765443211 13467888888888444444444
Q ss_pred EEEEEccccc
Q 041206 356 VGVWKWLLAE 365 (371)
Q Consensus 356 i~iw~~~~~~ 365 (371)
+..|+..+.+
T Consensus 538 l~~~~~~~~~ 547 (758)
T 3ott_A 538 VMRINPKDES 547 (758)
T ss_dssp EEEECC--CC
T ss_pred eEEEecCCCc
Confidence 7777765543
No 309
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.18 E-value=1.4 Score=37.94 Aligned_cols=171 Identities=9% Similarity=0.158 Sum_probs=92.3
Q ss_pred eeCccCCeEEEEEcCCCCEEEEEe------------CCCcEEEEECCCCc-eEEEEeCCCeeEEEeecCCEEEEecCCcE
Q 041206 92 LNGHKKAVTNVGLPSGSNKLYSGS------------RDGRVSVWDRDSGR-CVNVITNGAEIGCLISEGSWVFLGLPNAV 158 (371)
Q Consensus 92 l~~h~~~V~~~~~~~~~~~l~s~~------------~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (371)
+++-....-.+...|+|..+++++ .+|.|.++|..+.. ....+..... .
T Consensus 45 i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~----~-------------- 106 (355)
T 3sre_A 45 VKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGN----T-------------- 106 (355)
T ss_dssp CTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECS----S--------------
T ss_pred eCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCC----C--------------
Confidence 344233455667788876555542 68889999987321 1122221000 0
Q ss_pred EEEEeCCCCeeEEEEeC----C-EEEEEe-C--CCeEEEEeccCCCCcceeeEEEecCc--ceEEEEecCCceeEecccc
Q 041206 159 KSWRVNAASVNALVVNN----D-LLFAGS-E--GGVISVWKGTFVANPFKQVASIRAPL--WFCSLSSSNDTRWNSKEEA 228 (371)
Q Consensus 159 ~~~~~~~~~v~~~~~~~----~-~l~~~~-~--dg~v~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~l~~~~~~ 228 (371)
++........+.+.+ . +|+++. . +..|.+|++.........+..+.+.. ..+.+.+.++|.++.++..
T Consensus 107 --~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~ 184 (355)
T 3sre_A 107 --LDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDH 184 (355)
T ss_dssp --CCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESC
T ss_pred --CCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCc
Confidence 000112345555532 1 344442 2 46788888776544445566666655 7899999999986544111
Q ss_pred eee-----------eeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc--CCeEE-EEeCCCcEEEEEccC
Q 041206 229 AVF-----------EFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW--DEYLF-SSSLDETIKIWLYTH 285 (371)
Q Consensus 229 ~~~-----------~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~-s~~~dg~i~iwd~~~ 285 (371)
... +...|.|+-+|.. +. ..+...-..-+.++|+ ++.|+ +-+..+.|..|++..
T Consensus 185 ~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 185 YFIDPYLKSWEMHLGLAWSFVTYYSPN--DV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp SCSSHHHHHHHHHTTCCCEEEEEECTT--CC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred EeCCcccccchhhccCCccEEEEEECC--eE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 000 0123566666663 22 2222233456889999 44554 445678899999864
No 310
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=95.10 E-value=1.3 Score=37.41 Aligned_cols=164 Identities=14% Similarity=0.137 Sum_probs=97.4
Q ss_pred eeeCccCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCee
Q 041206 91 KLNGHKKAVTNVGLPSGSNKLYSGS-RDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVN 169 (371)
Q Consensus 91 ~l~~h~~~V~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~ 169 (371)
.+++..-.-.+++|.+....|+.++ ..++|..||...+..... ...... .+ .+ ....+.
T Consensus 7 ~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s----~~-------g~--------~~~~~s 66 (334)
T 2p9w_A 7 DVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGAS----SN-------GD--------GEQQMS 66 (334)
T ss_dssp EECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTC----CS-------SC--------CSEEEE
T ss_pred EecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCcc----cc-------CC--------Ccceee
Confidence 3444455566788988555555555 789999999876654433 211100 00 00 000246
Q ss_pred EEEE---eCC-EEEE-Ee-------------CCCeEEEEecc---CCCCcceeeEEEec-------------Cc-ceEEE
Q 041206 170 ALVV---NND-LLFA-GS-------------EGGVISVWKGT---FVANPFKQVASIRA-------------PL-WFCSL 214 (371)
Q Consensus 170 ~~~~---~~~-~l~~-~~-------------~dg~v~iwd~~---~~~~~~~~~~~~~~-------------~~-~v~~~ 214 (371)
.+.+ +++ .|++ .. .+..|..||+. ++ +.+....- .. ....+
T Consensus 67 Gl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg----~~~~~~dL~~~~~~~~~~~g~~~~~~nDv 142 (334)
T 2p9w_A 67 GLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENS----KPVWSVNFEKVQDEFEKKAGKRPFGVVQS 142 (334)
T ss_dssp EEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTC----CCSEEEESHHHHHHHHHHHSSCCEEEEEE
T ss_pred EEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCC----CEEEEecCccccccccccccccccCCcee
Confidence 7788 455 3333 32 26779999998 55 33332221 11 48899
Q ss_pred EecCCce-eEecccceeeeeCC-CeEEEEECCCceEEEEee------cCCCcEEEEEEc--CCeEEEEeCCCcEEEEEcc
Q 041206 215 SSSNDTR-WNSKEEAAVFEFCG-HTTRTWNLDNLECVQTLK------GHSDTVTSLLFW--DEYLFSSSLDETIKIWLYT 284 (371)
Q Consensus 215 ~~~~~~~-l~~~~~~~~~~~~d-g~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~ 284 (371)
+..++|. .+++ +.. +.|...+.... .+..+. ......+.|++. ++.|+.....|.+..+|+.
T Consensus 143 avD~~GnaYVt~-------s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 143 AQDRDGNSYVAF-------ALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EECTTSCEEEEE-------EESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred EECCCCCEEEeC-------CCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 9999998 5667 666 77777776643 222221 111235688888 6677777669999999977
Q ss_pred CC
Q 041206 285 HT 286 (371)
Q Consensus 285 ~~ 286 (371)
.+
T Consensus 215 ~p 216 (334)
T 2p9w_A 215 KP 216 (334)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 311
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.09 E-value=1.4 Score=37.77 Aligned_cols=145 Identities=11% Similarity=0.075 Sum_probs=80.4
Q ss_pred ceEEEEecCCceeEecccceeeee-------------CCCeEEEEECCC--ceEE-EEeec-----CCCcEEEEEEc---
Q 041206 210 WFCSLSSSNDTRWNSKEEAAVFEF-------------CGHTTRTWNLDN--LECV-QTLKG-----HSDTVTSLLFW--- 265 (371)
Q Consensus 210 ~v~~~~~~~~~~l~~~~~~~~~~~-------------~dg~i~iwd~~~--~~~~-~~~~~-----~~~~v~~~~~~--- 265 (371)
....++..|+|.++++ + .+|.|.++|+.+ .+.. ..+.+ .......+.+.
T Consensus 51 G~EDi~~~~~G~~~~s-------~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~ 123 (355)
T 3sre_A 51 GSEDLEILPNGLAFIS-------SGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDD 123 (355)
T ss_dssp CCCEEEECTTSEEEEE-------ECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECT
T ss_pred CcceeEEcCCCeEEEE-------eccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECC
Confidence 5567778888886665 4 689999999973 2221 12222 12355666663
Q ss_pred -CC-eEEEE-eC--CCcEEEEEccCCCC---------cceecceEEEEecCCCCEEEEec-----------------CCC
Q 041206 266 -DE-YLFSS-SL--DETIKIWLYTHTKN---------NAELSSLFGMLDAEAKPVLFSSG-----------------KDS 314 (371)
Q Consensus 266 -~~-~l~s~-~~--dg~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~-----------------~d~ 314 (371)
+. +|+.+ .. +.+|.+|++..... ...+.....+...+++.+.++.. ..|
T Consensus 124 dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g 203 (355)
T 3sre_A 124 DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWS 203 (355)
T ss_dssp TCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCE
T ss_pred CCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCcc
Confidence 22 34443 33 56788888765432 11122333333333443444432 124
Q ss_pred eEEEEEcCCcceeeeecCCceEEEEEeCCCC--eEEeeCCCCcEEEEEccc
Q 041206 315 AIRLYELPSFKLRARIFSRREVEVDQIGPAG--LFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 315 ~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~~--~l~~~~~dg~i~iw~~~~ 363 (371)
.|.-+|.. +.......-...+.++|+||+ ++++-+..+.|..|++..
T Consensus 204 ~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 204 FVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred EEEEEECC--eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 45555543 222112223457899999999 555556678999999863
No 312
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.01 E-value=0.58 Score=37.04 Aligned_cols=124 Identities=11% Similarity=0.003 Sum_probs=69.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce------EEEEeC--CCeeEEEeec--CCEEEEecCCcEEEEEeCCC-
Q 041206 98 AVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRC------VNVITN--GAEIGCLISE--GSWVFLGLPNAVKSWRVNAA- 166 (371)
Q Consensus 98 ~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~------~~~~~~--~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~- 166 (371)
.+..++|+|++.+.+. .+|.+.-.+..+... ...+-. -....++.++ +.+.++ .++.|.-++..+.
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~ 118 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQSD 118 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCST
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcCC
Confidence 6779999999886555 677766666544221 111111 0112455553 445555 7788877766442
Q ss_pred -----------------CeeEEEEeCC-EEEEEeCCCeEEEEeccCCCC-cc-eeeEEEe-cCc-ceEEEEecCCceeEe
Q 041206 167 -----------------SVNALVVNND-LLFAGSEGGVISVWKGTFVAN-PF-KQVASIR-APL-WFCSLSSSNDTRWNS 224 (371)
Q Consensus 167 -----------------~v~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~-~~-~~~~~~~-~~~-~v~~~~~~~~~~l~~ 224 (371)
.+..|.+.|+ .|.... |+.++-........ .+ .....+- ..- ..+.+.|.+++.|..
T Consensus 119 ~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~ 197 (236)
T 1tl2_A 119 TDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFG 197 (236)
T ss_dssp TCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEE
T ss_pred CCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEE
Confidence 6889999999 666666 88854332221111 11 1111222 122 445566888887777
Q ss_pred c
Q 041206 225 K 225 (371)
Q Consensus 225 ~ 225 (371)
.
T Consensus 198 v 198 (236)
T 1tl2_A 198 V 198 (236)
T ss_dssp E
T ss_pred E
Confidence 6
No 313
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.95 E-value=1.4 Score=36.74 Aligned_cols=126 Identities=15% Similarity=0.146 Sum_probs=64.0
Q ss_pred eEEEEECCCceEEEE--eecCCCcEEEEEEcCCeEEEEeCC-------CcEEEEEccCCCC------cceecceEEEEec
Q 041206 237 TTRTWNLDNLECVQT--LKGHSDTVTSLLFWDEYLFSSSLD-------ETIKIWLYTHTKN------NAELSSLFGMLDA 301 (371)
Q Consensus 237 ~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~------~~~~~~~~~~~~~ 301 (371)
.+.+||+.+.+-... +.........+.+.+..++.|+.+ ..+.+||+....= ......... ...
T Consensus 125 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~-~~~ 203 (302)
T 2xn4_A 125 SVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGV-GVL 203 (302)
T ss_dssp EEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEE-EEE
T ss_pred eEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccE-EEE
Confidence 678899887654322 221122223333446666666542 3478888654321 111111121 222
Q ss_pred CCCCEEEEecCC-----CeEEEEEcCCcc--eeeeecCC-ceEEEEEeCCCC-eEEeeCCCC-----cEEEEEccccce
Q 041206 302 EAKPVLFSSGKD-----SAIRLYELPSFK--LRARIFSR-REVEVDQIGPAG-LFFPGDASG-----SVGVWKWLLAEQ 366 (371)
Q Consensus 302 ~~~~~l~~~~~d-----~~i~iwd~~~~~--~~~~~~~~-~~v~~~~~s~~~-~l~~~~~dg-----~i~iw~~~~~~~ 366 (371)
++.+++.|+.+ ..+.+||+.+.+ .+...... .....+.+ ++ +++.|+.++ .+.+||+.+.+-
T Consensus 204 -~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 204 -NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp -TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred -CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 33467777654 468999988754 22222211 11112222 55 666666543 488999877653
No 314
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=94.95 E-value=1.8 Score=38.15 Aligned_cols=163 Identities=13% Similarity=0.158 Sum_probs=91.1
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCC----CeeEEEEeCC---EEEEEe
Q 041206 110 KLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAA----SVNALVVNND---LLFAGS 182 (371)
Q Consensus 110 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~v~~~~~~~~---~l~~~~ 182 (371)
.|-+....-.|..|.+-+...+...... .+....-+ +....++++|.|.. .|.....+++ .+++|-
T Consensus 98 klks~~~~e~VvfWkWis~~~l~lVT~t-aVyHWsi~------~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI 170 (494)
T 1bpo_A 98 KMKAHTMTDDVTFWKWISLNTVALVTDN-AVYHWSME------GESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI 170 (494)
T ss_dssp EEEEEECSSCCCEEEEEETTEEEEECSS-EEEEEESS------SSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEE
T ss_pred hhcceecCCCceEEEecCCCeEEEEcCC-eeEEeccc------CCCCchhheecchhcccceEEEEEECCCCCeEEEEee
Confidence 4445544445677776655554433321 11111111 13456666666543 5666666766 333332
Q ss_pred ------CCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCc---eeEe-cccceeeeeCCCeEEEEECCCc---e-
Q 041206 183 ------EGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDT---RWNS-KEEAAVFEFCGHTTRTWNLDNL---E- 247 (371)
Q Consensus 183 ------~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~---~l~~-~~~~~~~~~~dg~i~iwd~~~~---~- 247 (371)
-.|.+.+|..+.. ..+.+.+|. ....+....+. .+++ +... ...+.++|.++... .
T Consensus 171 ~~~~~~v~G~mQLYS~er~-----~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~----~~g~kLhi~Ei~~~~~~~~ 241 (494)
T 1bpo_A 171 SAQQNRVVGAMQLYSVDRK-----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRG----QAGGKLHIIEVGTPPTGNQ 241 (494)
T ss_dssp EEETTEEEEEEEEEESTTC-----CEEEECCSEEEEEEEECTTCSSEEEEEEEEECS----TTCCEEEEEECSCCCTTCC
T ss_pred cccCCcccceEEEeecccc-----ccchheeeeeeeEEEecCCCCCCceEEEEEEec----CCCcEEEEEEcCCCccCCC
Confidence 2478899998874 677888888 66566555432 2332 2000 12378999998542 1
Q ss_pred -----EEEEee---cCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC
Q 041206 248 -----CVQTLK---GHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN 288 (371)
Q Consensus 248 -----~~~~~~---~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~ 288 (371)
.+..+- ...+.-.++..+ -..+..-..-|.|.+||+.+...
T Consensus 242 ~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~ 292 (494)
T 1bpo_A 242 PFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (494)
T ss_dssp CCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred CccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEeccccee
Confidence 111111 113344466666 35777888999999999988764
No 315
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.89 E-value=1.4 Score=36.67 Aligned_cols=175 Identities=4% Similarity=0.001 Sum_probs=86.1
Q ss_pred EEEEEeCC----CeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCce-eEecccceeeeeCC------CeEEEEECC
Q 041206 177 LLFAGSEG----GVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTR-WNSKEEAAVFEFCG------HTTRTWNLD 244 (371)
Q Consensus 177 ~l~~~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~d------g~i~iwd~~ 244 (371)
.++.|+.+ ..+.+||+.+.. +..+..+.... ....+.+ +++ ++.| +.+ ..+.+||+.
T Consensus 58 lyv~GG~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~G-------G~~~~~~~~~~~~~~d~~ 126 (306)
T 3ii7_A 58 VYILGGSQLFPIKRMDCYNVVKDS--WYSKLGPPTPRDSLAACAA--EGKIYTSG-------GSEVGNSALYLFECYDTR 126 (306)
T ss_dssp EEEECCBSSSBCCEEEEEETTTTE--EEEEECCSSCCBSCEEEEE--TTEEEEEC-------CBBTTBSCCCCEEEEETT
T ss_pred EEEEeCCCCCCcceEEEEeCCCCe--EEECCCCCccccceeEEEE--CCEEEEEC-------CCCCCCcEeeeEEEEeCC
Confidence 55555543 567788887651 12222222111 2222222 455 4555 433 568999998
Q ss_pred CceEEEE--eecCCCcEEEEEEcCCeEEEEeC---------CCcEEEEEccCCCC------cceecceEEEEecCCCCEE
Q 041206 245 NLECVQT--LKGHSDTVTSLLFWDEYLFSSSL---------DETIKIWLYTHTKN------NAELSSLFGMLDAEAKPVL 307 (371)
Q Consensus 245 ~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~l 307 (371)
+.+-... +......-..+.+.+.+++.|+. -..+.+||+....= .........+. . ++.++
T Consensus 127 ~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~-~~~i~ 204 (306)
T 3ii7_A 127 TESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF-V-KDKIF 204 (306)
T ss_dssp TTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEE
T ss_pred CCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE-E-CCEEE
Confidence 8654322 22111222233344666666653 34578888655431 11111112122 2 33366
Q ss_pred EEecCC-----CeEEEEEcCCcc--eeeeecC-CceEEEEEeCCCC-eEEeeCCC-----CcEEEEEccccce
Q 041206 308 FSSGKD-----SAIRLYELPSFK--LRARIFS-RREVEVDQIGPAG-LFFPGDAS-----GSVGVWKWLLAEQ 366 (371)
Q Consensus 308 ~~~~~d-----~~i~iwd~~~~~--~~~~~~~-~~~v~~~~~s~~~-~l~~~~~d-----g~i~iw~~~~~~~ 366 (371)
+.|+.+ ..+.+||+.+.+ .+..+.. ......+.+ ++ +++.|+.+ ..+.+||+.+.+-
T Consensus 205 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 205 AVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp EECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred EEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 676643 468899988754 2222221 122223333 55 77777643 4678888876543
No 316
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.37 E-value=5 Score=41.14 Aligned_cols=163 Identities=13% Similarity=0.131 Sum_probs=84.5
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCC----CCeeEEEEeCC---EEEEEe-
Q 041206 111 LYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNA----ASVNALVVNND---LLFAGS- 182 (371)
Q Consensus 111 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~v~~~~~~~~---~l~~~~- 182 (371)
|-+....-.|..|.+-+...+....... +....-. +....+++++.|. ..|.....+++ .+++|-
T Consensus 99 lks~~~~e~VvfWkWis~~~l~lVT~~a-VyHW~~~------~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~ 171 (1630)
T 1xi4_A 99 MKAHTMTDDVTFWKWISLNTVALVTDNA-VYHWSME------GESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGIS 171 (1630)
T ss_pred hcccccCCCceEEEecCCCeeEEEcCCe-EEEeccC------CCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeec
Confidence 3344444568888877766655444211 1110000 1223444444442 25666666666 333332
Q ss_pred -----CCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCC---ceeEecccceeeeeCCCeEEEEECCCc---eEE-
Q 041206 183 -----EGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSND---TRWNSKEEAAVFEFCGHTTRTWNLDNL---ECV- 249 (371)
Q Consensus 183 -----~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~---~~l~~~~~~~~~~~~dg~i~iwd~~~~---~~~- 249 (371)
-.|.+.+|+.+.. ..+.+.+|. ....+..... ..+++-. ......+.++|.++... .+.
T Consensus 172 ~~~~~v~G~mQLyS~er~-----~sQ~iegha~~F~~~~~~~~~~~~~l~~f~---~~~~~g~kLhi~Ei~~~~~~~~~f 243 (1630)
T 1xi4_A 172 AQQNRVVGAMQLYSVDRK-----VSQPIEGHAASFAQFKMEGNAEESTLFCFA---VRGQAGGKLHIIEVGTPPTGNQPF 243 (1630)
T ss_pred cCCCcccceeeeeecccc-----cchhhhHhHhhhheeccCCCCCCceEEEEE---EecCCCceEEEEecCCCccCCCCC
Confidence 3588999998874 455677776 4444443321 2233320 00022378899888542 111
Q ss_pred -----EEeec---CCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC
Q 041206 250 -----QTLKG---HSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN 288 (371)
Q Consensus 250 -----~~~~~---~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~ 288 (371)
..+-. ..+.-.++..+ -..+...+.-|.|.+||+.+...
T Consensus 244 ~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 244 PKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (1630)
T ss_pred ccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchh
Confidence 11111 12223345555 34677778899999999988764
No 317
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.09 E-value=2.2 Score=35.50 Aligned_cols=89 Identities=7% Similarity=-0.005 Sum_probs=46.6
Q ss_pred CCeEEEEECCCceEEEE--eecCCCcEEEEEEcCCeEEEEeCC-----CcEEEEEccCCC------CcceecceEEEEec
Q 041206 235 GHTTRTWNLDNLECVQT--LKGHSDTVTSLLFWDEYLFSSSLD-----ETIKIWLYTHTK------NNAELSSLFGMLDA 301 (371)
Q Consensus 235 dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~------~~~~~~~~~~~~~~ 301 (371)
-..+.+||+.+.+-... +......-..+.+.+.+++.|+.+ ..+.+||+...+ .............
T Consensus 168 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~- 246 (306)
T 3ii7_A 168 LNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV- 246 (306)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-
T ss_pred cceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-
Confidence 45688999988754322 221112222333446666666653 357888866532 1111111222222
Q ss_pred CCCCEEEEecCC-----CeEEEEEcCCcc
Q 041206 302 EAKPVLFSSGKD-----SAIRLYELPSFK 325 (371)
Q Consensus 302 ~~~~~l~~~~~d-----~~i~iwd~~~~~ 325 (371)
++.+++.|+.+ ..+.+||+.+.+
T Consensus 247 -~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 247 -GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp -TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred -CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 34477777743 568888887754
No 318
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.62 E-value=3.5 Score=36.21 Aligned_cols=69 Identities=13% Similarity=0.067 Sum_probs=47.6
Q ss_pred CCeeEEEEeCC-----EEEEEeCCCeEEEEeccCCCCcceee----EEEe--cCc-ceEEEEecCCce-eEe--ccccee
Q 041206 166 ASVNALVVNND-----LLFAGSEGGVISVWKGTFVANPFKQV----ASIR--APL-WFCSLSSSNDTR-WNS--KEEAAV 230 (371)
Q Consensus 166 ~~v~~~~~~~~-----~l~~~~~dg~v~iwd~~~~~~~~~~~----~~~~--~~~-~v~~~~~~~~~~-l~~--~~~~~~ 230 (371)
.+|..+.|+|- .|++-..|+.|++||+.........+ ..+. ... .|.+++|.+++. |+. .
T Consensus 125 s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~----- 199 (452)
T 3pbp_A 125 SSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNT----- 199 (452)
T ss_dssp CCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEEC-----
T ss_pred CceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEec-----
Confidence 36899999986 89999999999999998732211111 1111 122 788999999874 555 4
Q ss_pred eeeCCCeEEEE
Q 041206 231 FEFCGHTTRTW 241 (371)
Q Consensus 231 ~~~~dg~i~iw 241 (371)
+.+|.|+-.
T Consensus 200 --t~~GDIYAl 208 (452)
T 3pbp_A 200 --TEGGDIFAF 208 (452)
T ss_dssp --TTSCEEEEE
T ss_pred --CCCCCEEEE
Confidence 477888653
No 319
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=93.45 E-value=2.9 Score=34.69 Aligned_cols=196 Identities=13% Similarity=0.075 Sum_probs=94.1
Q ss_pred CcEEEEECCCCceEEEEeCCCe---eEEEeecCCEEEEec-C-----CcEEEEEeCCCCe------------eEEEEeCC
Q 041206 118 GRVSVWDRDSGRCVNVITNGAE---IGCLISEGSWVFLGL-P-----NAVKSWRVNAASV------------NALVVNND 176 (371)
Q Consensus 118 g~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~-----~~i~~~~~~~~~v------------~~~~~~~~ 176 (371)
..+.++|..+.+-...-..+.+ -.....++.+++.+. + +.+..||..+..- .+++...+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~ 109 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNG 109 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETT
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECC
Confidence 3577888877654332111111 122233455544432 2 4577888776622 12222233
Q ss_pred -EEEEEeCCC-----eEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eEecccceeeeeC-------CCeEEEEE
Q 041206 177 -LLFAGSEGG-----VISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFC-------GHTTRTWN 242 (371)
Q Consensus 177 -~l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~-------dg~i~iwd 242 (371)
.++.|+.++ .+.+||+.+.. +..+..+.....-.+++.. +++ ++.| +. -..+.+||
T Consensus 110 ~iyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~-~~~iyv~G-------G~~~~~~~~~~~~~~yd 179 (302)
T 2xn4_A 110 LLYAVGGFDGSTGLSSVEAYNIKSNE--WFHVAPMNTRRSSVGVGVV-GGLLYAVG-------GYDVASRQCLSTVECYN 179 (302)
T ss_dssp EEEEEEEECSSCEEEEEEEEETTTTE--EEEECCCSSCCBSCEEEEE-TTEEEEEC-------CEETTTTEECCCEEEEE
T ss_pred EEEEEcCCCCCccCceEEEEeCCCCe--EeecCCCCCcccCceEEEE-CCEEEEEe-------CCCCCCCccccEEEEEe
Confidence 556665443 46777877651 1222222211111122222 344 4444 32 34588999
Q ss_pred CCCceEEEE--eecCCCcEEEEEEcCCeEEEEeCC-----CcEEEEEccCCCC------cceecceEEEEecCCCCEEEE
Q 041206 243 LDNLECVQT--LKGHSDTVTSLLFWDEYLFSSSLD-----ETIKIWLYTHTKN------NAELSSLFGMLDAEAKPVLFS 309 (371)
Q Consensus 243 ~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~l~~ 309 (371)
+.+.+-... +.........+.+.+.+++.|+.+ ..+.+||+...+= ........ +... ++.+++.
T Consensus 180 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~-~~~~-~~~i~v~ 257 (302)
T 2xn4_A 180 ATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAG-VCAV-NGLLYVV 257 (302)
T ss_dssp TTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE-EEEE-TTEEEEE
T ss_pred CCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCe-EEEE-CCEEEEE
Confidence 987654322 222222223344456677777654 3688888655331 11111111 1222 3346777
Q ss_pred ecCCC-----eEEEEEcCCcc
Q 041206 310 SGKDS-----AIRLYELPSFK 325 (371)
Q Consensus 310 ~~~d~-----~i~iwd~~~~~ 325 (371)
|+.++ .+.+||+.+.+
T Consensus 258 GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 258 GGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CCBCSSSBCCCEEEEETTTTE
T ss_pred CCcCCCcccccEEEEcCCCCe
Confidence 76543 48889887654
No 320
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=93.19 E-value=3.2 Score=34.55 Aligned_cols=207 Identities=8% Similarity=0.072 Sum_probs=98.5
Q ss_pred CCCEEEEEeCC----CcEEEEECCCCceEEEEeCCCe---eEEEeecCCEEEEecC----------CcEEEEEeCCCCe-
Q 041206 107 GSNKLYSGSRD----GRVSVWDRDSGRCVNVITNGAE---IGCLISEGSWVFLGLP----------NAVKSWRVNAASV- 168 (371)
Q Consensus 107 ~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----------~~i~~~~~~~~~v- 168 (371)
++.+++.|+.+ ..+.++|..+++-...-..+.+ ......++.+++.+.. +.+.+||..+..-
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence 45566666532 3588888877754433211111 1222334444444322 4577788776622
Q ss_pred ------------eEEEEeCCEEEEEeCC-----CeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eEeccccee
Q 041206 169 ------------NALVVNNDLLFAGSEG-----GVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAV 230 (371)
Q Consensus 169 ------------~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~ 230 (371)
....+....++.|+.+ ..+.+||+.+.. +..+..+.....-.+++.. +++ ++.|
T Consensus 104 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~-~~~iyv~G----- 175 (308)
T 1zgk_A 104 PCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDE--WHLVAPMLTRRIGVGVAVL-NRLLYAVG----- 175 (308)
T ss_dssp ECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE-TTEEEEEC-----
T ss_pred ECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCe--EeECCCCCccccceEEEEE-CCEEEEEe-----
Confidence 1222222245555432 357778877652 1222222211111122222 345 4555
Q ss_pred eeeCC-----CeEEEEECCCceEEEE--eecCCCcEEEEEEcCCeEEEEeCC-----CcEEEEEccCCCC------ccee
Q 041206 231 FEFCG-----HTTRTWNLDNLECVQT--LKGHSDTVTSLLFWDEYLFSSSLD-----ETIKIWLYTHTKN------NAEL 292 (371)
Q Consensus 231 ~~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~------~~~~ 292 (371)
+.+ ..+.+||+.+.+-... +......-..+.+.+.+++.|+.+ ..+.+||+...+= ....
T Consensus 176 --G~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 253 (308)
T 1zgk_A 176 --GFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRR 253 (308)
T ss_dssp --CBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCC
T ss_pred --CCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCc
Confidence 433 5688999987654322 221122223344446667777654 4588888655331 1111
Q ss_pred cceEEEEecCCCCEEEEecCC-----CeEEEEEcCCcc
Q 041206 293 SSLFGMLDAEAKPVLFSSGKD-----SAIRLYELPSFK 325 (371)
Q Consensus 293 ~~~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~ 325 (371)
....... . ++.+++.|+.+ ..+.+||+.+.+
T Consensus 254 ~~~~~~~-~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 254 SALGITV-H-QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp BSCEEEE-E-TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred cceEEEE-E-CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 1112112 2 33466677643 457788887643
No 321
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=93.04 E-value=3.5 Score=34.48 Aligned_cols=51 Identities=4% Similarity=0.163 Sum_probs=29.3
Q ss_pred CeEEEEECCCceEEE--EeecCCCcEEEEEEcCCeEEEEeCCC-----cEEEEEccCC
Q 041206 236 HTTRTWNLDNLECVQ--TLKGHSDTVTSLLFWDEYLFSSSLDE-----TIKIWLYTHT 286 (371)
Q Consensus 236 g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~dg-----~i~iwd~~~~ 286 (371)
..+.+||+.+.+-.. .+......-..+.+.+.+++.|+.++ .+.+||+...
T Consensus 165 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 165 NKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred ceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCC
Confidence 468999998765432 22211222233444567777777654 4778886553
No 322
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=92.82 E-value=6.2 Score=36.82 Aligned_cols=258 Identities=9% Similarity=0.037 Sum_probs=132.5
Q ss_pred cCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceEEEEe-CCCeeEEEe--ecCCEEE-Eec--CCcEEEEEeCCC--
Q 041206 96 KKAVTNVGLPSGSNK-LYSGSRDGRVSVWDRDSGRCVNVIT-NGAEIGCLI--SEGSWVF-LGL--PNAVKSWRVNAA-- 166 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~--~~~~~~~-~~~--~~~i~~~~~~~~-- 166 (371)
-.....+++.+.+.. .++-...+.|.+.+.+.......+. .-.....+. +.+..++ +.. ...|...++...
T Consensus 83 ~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~ 162 (619)
T 3s94_A 83 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR 162 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce
Confidence 357899999985554 4555567899999987554333331 111222232 3334444 332 234544444332
Q ss_pred ---------CeeEEEEeCC--EEEEE-eCCCeEEEEeccCCCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeee
Q 041206 167 ---------SVNALVVNND--LLFAG-SEGGVISVWKGTFVANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEF 233 (371)
Q Consensus 167 ---------~v~~~~~~~~--~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~ 233 (371)
..+.|++++. .|+.+ ...+.|...|+... .......... ....+++..+..+++- .
T Consensus 163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~----~~~~~~~~~~~~P~gi~~~~~~ly~td-------~ 231 (619)
T 3s94_A 163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT----NRQAVVKGSLPHPFALTLFEDILYWTD-------W 231 (619)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC----EEC---------CCCEEESSSEEEEEC-------T
T ss_pred EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC----ccEEEEeCCCCCceEEEEeCCEEEEec-------C
Confidence 4677888864 44444 44577888888654 2222222112 3456667665335555 5
Q ss_pred CCCeEEEEECCCceEEEEeec-----------CC---------------------------CcEEEEEEc----------
Q 041206 234 CGHTTRTWNLDNLECVQTLKG-----------HS---------------------------DTVTSLLFW---------- 265 (371)
Q Consensus 234 ~dg~i~iwd~~~~~~~~~~~~-----------~~---------------------------~~v~~~~~~---------- 265 (371)
..+.|...|..+++....+.. |. ..-.|.+..
T Consensus 232 ~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~ 311 (619)
T 3s94_A 232 STHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKT 311 (619)
T ss_dssp TTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSC
T ss_pred CCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcc
Confidence 667788888766543222111 00 001111111
Q ss_pred ----CCeEEEEeCCCcEEEEEccCCCCcce------ecceEEE-EecCCCCEEEEecCCCeEEEEEcCCcceeeeec-CC
Q 041206 266 ----DEYLFSSSLDETIKIWLYTHTKNNAE------LSSLFGM-LDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF-SR 333 (371)
Q Consensus 266 ----~~~l~s~~~dg~i~iwd~~~~~~~~~------~~~~~~~-~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~ 333 (371)
++.++.-+..+.|+..++........ +.....+ +.+.++.++++-...+.|+.+++........+. .-
T Consensus 312 C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~ 391 (619)
T 3s94_A 312 CKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQI 391 (619)
T ss_dssp BCSSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred cCCCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCC
Confidence 01122222345677777665443211 1222333 444455455555667888888887643222222 22
Q ss_pred ceEEEEEeCCC-C-eEEeeCCCCcEEEEEcccc
Q 041206 334 REVEVDQIGPA-G-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 334 ~~v~~~~~s~~-~-~l~~~~~dg~i~iw~~~~~ 364 (371)
.....+++.+. + ++++-+..+.|.+.++...
T Consensus 392 ~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~ 424 (619)
T 3s94_A 392 AHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT 424 (619)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCcCceEEecccCcEEEEeCCCCcEEEEeCCCC
Confidence 45678888764 4 6666667788888887654
No 323
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=92.67 E-value=3.7 Score=33.92 Aligned_cols=89 Identities=12% Similarity=0.078 Sum_probs=48.3
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCc---eEEEEeCCC---eeEEEeecCCEEEEec------CCcEEEEEeCCCCee
Q 041206 107 GSNKLYSGSRD-----GRVSVWDRDSGR---CVNVITNGA---EIGCLISEGSWVFLGL------PNAVKSWRVNAASVN 169 (371)
Q Consensus 107 ~~~~l~s~~~d-----g~v~iwd~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~v~ 169 (371)
++++++.|+.+ ..+.+||..+++ -......+. ...+...++.+++.+. .+.+.+||..+..-.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 141 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWS 141 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence 46677777754 468999988876 333322211 1222334555555542 246888888776333
Q ss_pred EEE------------EeCC-EEEEEeCC-----CeEEEEeccCC
Q 041206 170 ALV------------VNND-LLFAGSEG-----GVISVWKGTFV 195 (371)
Q Consensus 170 ~~~------------~~~~-~l~~~~~d-----g~v~iwd~~~~ 195 (371)
.+. ...+ .++.|+.+ ..+.+||+.+.
T Consensus 142 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~ 185 (301)
T 2vpj_A 142 MLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTG 185 (301)
T ss_dssp EEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred ECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCC
Confidence 222 2222 45555543 35777777665
No 324
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=91.22 E-value=4.6 Score=31.94 Aligned_cols=170 Identities=10% Similarity=-0.001 Sum_probs=85.5
Q ss_pred EEEEEeCCCeEEEEeccCCCC-cc-eeeEEEecCc--ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCceE----
Q 041206 177 LLFAGSEGGVISVWKGTFVAN-PF-KQVASIRAPL--WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLEC---- 248 (371)
Q Consensus 177 ~l~~~~~dg~v~iwd~~~~~~-~~-~~~~~~~~~~--~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~~---- 248 (371)
.|++...| +++.=....... .+ .....+-... .+..++|+|++.|.+. .+|.++-.+..+.+.
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--------~~G~Ly~~~~~t~~~~~W~ 76 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--------LNDKIYKGTPPTHDNDNWM 76 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--------ETTEEEEESCCCSTTCCHH
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--------eCCeEEEECCCCCCccccc
Confidence 45666666 555444443321 11 1223333322 7789999999886654 356677666654211
Q ss_pred --EEEee--cCCCcEEEEEEcC-CeEEEEeCCCcEEEEEccCCCCcc-----------eecceEEEEecCCCCEEEEecC
Q 041206 249 --VQTLK--GHSDTVTSLLFWD-EYLFSSSLDETIKIWLYTHTKNNA-----------ELSSLFGMLDAEAKPVLFSSGK 312 (371)
Q Consensus 249 --~~~~~--~~~~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~ 312 (371)
-..+- +.. .-.++.|.+ ..|..+ .||.|+-++-....... -...+..++..+++.+ .+..
T Consensus 77 ~s~t~IG~~Gw~-~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~L-yav~- 152 (236)
T 1tl2_A 77 GRAKKIGNGGWN-QFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYL-YAVH- 152 (236)
T ss_dssp HHCEEEECSCGG-GCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCE-EEEE-
T ss_pred ccccEecccccc-cceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceE-EEEe-
Confidence 11111 111 136777773 344444 77988877743332211 1134566677777744 4444
Q ss_pred CCeEEEEEcCCcc------eeeeec--CCceEEEEEeCCCCeEEeeCCCCcEEEEEcc
Q 041206 313 DSAIRLYELPSFK------LRARIF--SRREVEVDQIGPAGLFFPGDASGSVGVWKWL 362 (371)
Q Consensus 313 d~~i~iwd~~~~~------~~~~~~--~~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~ 362 (371)
|+.++-....... ....+. .-..-+.+.|.|++.|.... +| ++|...
T Consensus 153 dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~-~g--~~Y~~~ 207 (236)
T 1tl2_A 153 GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ-GG--KFYEDY 207 (236)
T ss_dssp TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE-TT--EEEEES
T ss_pred CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe-CC--eEEecC
Confidence 7776544433221 001111 12234557799999333333 66 455543
No 325
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=89.55 E-value=0.43 Score=40.68 Aligned_cols=99 Identities=7% Similarity=-0.064 Sum_probs=62.2
Q ss_pred eCCCeEEEEECCCceEEEEeecC-CCcEEEEEEc----CCeEEEE--eCCCcEEEEEccCCCCccee--------cceEE
Q 041206 233 FCGHTTRTWNLDNLECVQTLKGH-SDTVTSLLFW----DEYLFSS--SLDETIKIWLYTHTKNNAEL--------SSLFG 297 (371)
Q Consensus 233 ~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~----~~~l~s~--~~dg~i~iwd~~~~~~~~~~--------~~~~~ 297 (371)
+.||.|+-+|..+|+.+.+++.. ..++....-. +..++.+ +.||.|..++...+...-.. ..+..
T Consensus 17 t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~ 96 (339)
T 2be1_A 17 DVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL 96 (339)
T ss_dssp ETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE
T ss_pred eCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceecccccc
Confidence 99999999999999999888754 1232222111 1233333 57899988886554321111 00110
Q ss_pred E--Ee-------cCCCCEEEEecCCCeEEEEEcCCcceeeeecC
Q 041206 298 M--LD-------AEAKPVLFSSGKDSAIRLYELPSFKLRARIFS 332 (371)
Q Consensus 298 ~--~~-------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 332 (371)
. .. ..++ .+++|+.++.+.-.|+.+++.+.++..
T Consensus 97 ~~~pvv~~~~~~~~~g-~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 97 KTNIVVNDSGKIVEDE-KVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp ECC----------CCE-EEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred CCCceeecccccccCC-EEEEEecCCEEEEEECCCCcEEEEEec
Confidence 0 00 0233 789999999999999999998887763
No 326
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=89.45 E-value=9.3 Score=32.66 Aligned_cols=68 Identities=7% Similarity=-0.060 Sum_probs=44.6
Q ss_pred ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCce-EEEEee---cCCCcEEEEEEcCC-----eEEEEeC----C-
Q 041206 210 WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNLE-CVQTLK---GHSDTVTSLLFWDE-----YLFSSSL----D- 275 (371)
Q Consensus 210 ~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~~-~~~~~~---~~~~~v~~~~~~~~-----~l~s~~~----d- 275 (371)
....++|.|+++++.+ ..+|.|+++|. +++ .+..+. ........|+++++ .|+.+.. +
T Consensus 30 ~P~~ia~~pdG~l~V~-------e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~ 101 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVT-------ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGG 101 (354)
T ss_dssp CEEEEEEEETTEEEEE-------ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGG
T ss_pred CCeEEEEcCCCeEEEE-------eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCC
Confidence 6789999999998877 78899999974 444 222221 12346789999843 5554433 2
Q ss_pred ---CcEEEEEccC
Q 041206 276 ---ETIKIWLYTH 285 (371)
Q Consensus 276 ---g~i~iwd~~~ 285 (371)
..|..|+...
T Consensus 102 ~~~~~v~r~~~~~ 114 (354)
T 3a9g_A 102 HIRNRVIRGRLDG 114 (354)
T ss_dssp CEEEEEEEEEECS
T ss_pred CcceEEEEEEECC
Confidence 5566666543
No 327
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=87.84 E-value=12 Score=31.95 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=31.3
Q ss_pred CCCEEEEecCCCeEEEEEcCCc-cee--eeecC--CceEEEEEeCCCC-eEEee
Q 041206 303 AKPVLFSSGKDSAIRLYELPSF-KLR--ARIFS--RREVEVDQIGPAG-LFFPG 350 (371)
Q Consensus 303 ~~~~l~~~~~d~~i~iwd~~~~-~~~--~~~~~--~~~v~~~~~s~~~-~l~~~ 350 (371)
.+.++++.-..+.|...++... +.. ..+.. ...+..+++.||| ++++.
T Consensus 276 ~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 276 RGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp TTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred CCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 3446666667778988888753 222 23332 4578999999999 44444
No 328
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=87.78 E-value=12 Score=31.90 Aligned_cols=56 Identities=20% Similarity=0.392 Sum_probs=34.6
Q ss_pred CCEEEEecCCCeEEEEEcCCcceeee--ecC--CceEEEEEeCCCC-eEE-eeCCCCcEEEEEc
Q 041206 304 KPVLFSSGKDSAIRLYELPSFKLRAR--IFS--RREVEVDQIGPAG-LFF-PGDASGSVGVWKW 361 (371)
Q Consensus 304 ~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~--~~~v~~~~~s~~~-~l~-~~~~dg~i~iw~~ 361 (371)
+.++++.-..+.|...++..++.... +.. ...+..+++.||| +++ +-..+|. ||.+
T Consensus 289 g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~--I~ri 350 (353)
T 2g8s_A 289 QKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGE--LLKV 350 (353)
T ss_dssp TEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEE--EEEE
T ss_pred CcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCE--EEEE
Confidence 44666666778888888776543322 221 3478999999999 444 3334554 4544
No 329
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=87.69 E-value=18 Score=33.73 Aligned_cols=148 Identities=8% Similarity=-0.014 Sum_probs=80.5
Q ss_pred ceEEEEecC-Ccee-EecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEc---CCeEEEEeCCCcEEEEEcc
Q 041206 210 WFCSLSSSN-DTRW-NSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFW---DEYLFSSSLDETIKIWLYT 284 (371)
Q Consensus 210 ~v~~~~~~~-~~~l-~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~ 284 (371)
.+..+++.+ ++.+ ++- ...+.|+.+++........+.........++++ +++.++-+..+.|.+.++.
T Consensus 350 ~~~~ld~d~~~~~ly~sD-------~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~ 422 (619)
T 3s94_A 350 HAIAIDYDPVEGYIYWTD-------DEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLN 422 (619)
T ss_dssp SEEEEEEETTTTEEEEEE-------TTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ccEEEEEEcCCCeEEEEe-------CCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCC
Confidence 456677776 3443 333 446777777776533322333223455677775 4556666677889988876
Q ss_pred CCCCcc----eecceEEE-EecCCCCEEEEe-cCCCeEEEEEcCCcceeeeec-CCceEEEEEeCCCC--eEEeeCCCCc
Q 041206 285 HTKNNA----ELSSLFGM-LDAEAKPVLFSS-GKDSAIRLYELPSFKLRARIF-SRREVEVDQIGPAG--LFFPGDASGS 355 (371)
Q Consensus 285 ~~~~~~----~~~~~~~~-~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~--~l~~~~~dg~ 355 (371)
...... .+..-..+ ..+..+.++++- +..+.|...++.......-.. .-...+.|++++++ +.++=+..+.
T Consensus 423 G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~ 502 (619)
T 3s94_A 423 GTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDK 502 (619)
T ss_dssp SCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCE
Confidence 543211 11122233 334445333443 223567777765432221111 23567899999865 4444455678
Q ss_pred EEEEEcccc
Q 041206 356 VGVWKWLLA 364 (371)
Q Consensus 356 i~iw~~~~~ 364 (371)
|..+++...
T Consensus 503 I~~~~~dG~ 511 (619)
T 3s94_A 503 IEVMNTDGT 511 (619)
T ss_dssp EEEEESSSC
T ss_pred EEEEecCCC
Confidence 888887643
No 330
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=87.68 E-value=11 Score=31.31 Aligned_cols=136 Identities=10% Similarity=0.135 Sum_probs=66.9
Q ss_pred EcCCCCEEEEEeC----C-------CcEEEEECCCCceEEEEeCCCe---eEEEeecCCEEEEec---------CCcEEE
Q 041206 104 LPSGSNKLYSGSR----D-------GRVSVWDRDSGRCVNVITNGAE---IGCLISEGSWVFLGL---------PNAVKS 160 (371)
Q Consensus 104 ~~~~~~~l~s~~~----d-------g~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---------~~~i~~ 160 (371)
...++++++.|+. + ..+..||..+++-...-..+.+ ......++.+++.+. .+.+.+
T Consensus 42 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~ 121 (315)
T 4asc_A 42 VTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMC 121 (315)
T ss_dssp ECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEE
T ss_pred EEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEE
Confidence 3456777777773 1 1277888887764332222211 112233455544433 145788
Q ss_pred EEeCCCCe------------eEEEEeCC-EEEEEeC-C-----CeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce
Q 041206 161 WRVNAASV------------NALVVNND-LLFAGSE-G-----GVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR 221 (371)
Q Consensus 161 ~~~~~~~v------------~~~~~~~~-~l~~~~~-d-----g~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 221 (371)
||..+..- .+++...+ .++.|+. + ..+.+||+.+.. ++.+..+.....-.+++.. +++
T Consensus 122 ~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~-~~~ 198 (315)
T 4asc_A 122 YDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFE--WKELAPMQTARSLFGATVH-DGR 198 (315)
T ss_dssp EETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE-TTE
T ss_pred ECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCe--EEECCCCCCchhceEEEEE-CCE
Confidence 88876621 12222333 5556654 2 457888877652 1222222111111122222 344
Q ss_pred -eEecccceeeeeCCC-----eEEEEECCCceEE
Q 041206 222 -WNSKEEAAVFEFCGH-----TTRTWNLDNLECV 249 (371)
Q Consensus 222 -l~~~~~~~~~~~~dg-----~i~iwd~~~~~~~ 249 (371)
++.| +.++ .+.+||+.+.+-.
T Consensus 199 iyv~G-------G~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 199 IIVAA-------GVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp EEEEE-------EECSSSEEEEEEEEETTTTEEE
T ss_pred EEEEe-------ccCCCCccceEEEEECCCCeEE
Confidence 4555 4433 5788898876543
No 331
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=85.90 E-value=23 Score=33.11 Aligned_cols=147 Identities=14% Similarity=0.063 Sum_probs=80.1
Q ss_pred ceEEEEecCCc-ee-EecccceeeeeCCCeEEEEECCCceEEEEe-ecCCCcEEEEEEcC--C-eEEEEeCCC--cEEEE
Q 041206 210 WFCSLSSSNDT-RW-NSKEEAAVFEFCGHTTRTWNLDNLECVQTL-KGHSDTVTSLLFWD--E-YLFSSSLDE--TIKIW 281 (371)
Q Consensus 210 ~v~~~~~~~~~-~l-~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~--~-~l~s~~~dg--~i~iw 281 (371)
.+..+++...+ .| ++- +..+.|.+.++.. +....+ ........++++.+ . ++++-.... .|...
T Consensus 390 ~p~glAvD~~~~nLY~td-------~~~~~I~v~~~~G-~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~ 461 (628)
T 4a0p_A 390 QPYDLSIDIYSRYIYWTC-------EATNVINVTRLDG-RSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERA 461 (628)
T ss_dssp CEEEEEEETTTTEEEEEE-------TTTTEEEEEETTS-CEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEE
T ss_pred CcceEEeeccCCeEEEEc-------CCCCEEEEEECCC-CeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEE
Confidence 45677777654 33 455 5677888888864 443333 33455678888873 3 334433222 45444
Q ss_pred EccCCCCcc----eecceEEE-EecCCCCEEEEecCCCeEEEEEcCCcceeeeec--CCceEEEEEeCCCCeEEeeCCCC
Q 041206 282 LYTHTKNNA----ELSSLFGM-LDAEAKPVLFSSGKDSAIRLYELPSFKLRARIF--SRREVEVDQIGPAGLFFPGDASG 354 (371)
Q Consensus 282 d~~~~~~~~----~~~~~~~~-~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~~l~~~~~dg 354 (371)
++.-..... .+.....+ .....+++.++=+..+.|..+++.... ...+. ......++++..+.++.+=...+
T Consensus 462 ~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~-r~~~~~~~~~~P~glav~~~~ly~tD~~~~ 540 (628)
T 4a0p_A 462 ALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN-RIVLEDSNILQPVGLTVFENWLYWIDKQQQ 540 (628)
T ss_dssp ETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCEEEEEEETTEEEEEETTTT
T ss_pred eCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc-eEEEEcCCCCCcEEEEEECCEEEEEECCCC
Confidence 443322211 11122333 334445445555667889999986533 33332 23456777775533666666677
Q ss_pred cEEEEEccccc
Q 041206 355 SVGVWKWLLAE 365 (371)
Q Consensus 355 ~i~iw~~~~~~ 365 (371)
.|...+..+++
T Consensus 541 ~i~~~~k~~G~ 551 (628)
T 4a0p_A 541 MIEKIDMTGRE 551 (628)
T ss_dssp EEEEEETTSSS
T ss_pred eEEEEECcCCC
Confidence 77777766543
No 332
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=85.47 E-value=14 Score=30.48 Aligned_cols=169 Identities=9% Similarity=0.112 Sum_probs=84.0
Q ss_pred CCCEEEEEeC----C-----CcEEEEECCCCceEEEEeCCC---eeEEEeecCCEEEEec------CCcEEEEEeCCCCe
Q 041206 107 GSNKLYSGSR----D-----GRVSVWDRDSGRCVNVITNGA---EIGCLISEGSWVFLGL------PNAVKSWRVNAASV 168 (371)
Q Consensus 107 ~~~~l~s~~~----d-----g~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~v 168 (371)
++++++.|+. + ..+.++|..+.+-...-.... ...+...++.+++.+. ...+..||..+..-
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 149 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEW 149 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEE
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeE
Confidence 5666777665 2 468889988776443322211 1222334555555532 24678888876621
Q ss_pred ------------eEEEEeCC-EEEEEeCC-----CeEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eEecccce
Q 041206 169 ------------NALVVNND-LLFAGSEG-----GVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAA 229 (371)
Q Consensus 169 ------------~~~~~~~~-~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~ 229 (371)
.+++...+ .++.|+.+ ..+.+||+.+.. +..+..+.....-.+++.. +++ ++.|
T Consensus 150 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~-~~~iyv~G---- 222 (308)
T 1zgk_A 150 HLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNE--WRMITAMNTIRSGAGVCVL-HNCIYAAG---- 222 (308)
T ss_dssp EECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE-TTEEEEEC----
T ss_pred eECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCe--EeeCCCCCCccccceEEEE-CCEEEEEe----
Confidence 12222233 55556543 457788877652 1222222211111122222 344 4555
Q ss_pred eeeeCC-----CeEEEEECCCceEEEE--eecCCCcEEEEEEcCCeEEEEeCCC-----cEEEEEccC
Q 041206 230 VFEFCG-----HTTRTWNLDNLECVQT--LKGHSDTVTSLLFWDEYLFSSSLDE-----TIKIWLYTH 285 (371)
Q Consensus 230 ~~~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~dg-----~i~iwd~~~ 285 (371)
+.+ ..+.+||+.+.+-... +.........+.+.+.+++.|+.++ .+.+||+..
T Consensus 223 ---G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~ 287 (308)
T 1zgk_A 223 ---GYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDT 287 (308)
T ss_dssp ---CBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred ---CCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCC
Confidence 443 5689999988654322 2211122233334466667776543 456666544
No 333
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=85.33 E-value=17 Score=35.84 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=28.1
Q ss_pred ceEEEEecCCCCEEEEecCCCeEEEEEcCCcceeeee
Q 041206 294 SLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLRARI 330 (371)
Q Consensus 294 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 330 (371)
.+..+...++..++++-+.|+++|+|++.+++++...
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 3344445555668999999999999999998877654
No 334
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=85.14 E-value=16 Score=30.85 Aligned_cols=90 Identities=8% Similarity=-0.020 Sum_probs=44.8
Q ss_pred EEEEEeC-CCeEEEEeccCCCCcceeeEEEe-cCc-ceEEEEecCCce-eEecccceeeeeC----------CCeEEEEE
Q 041206 177 LLFAGSE-GGVISVWKGTFVANPFKQVASIR-APL-WFCSLSSSNDTR-WNSKEEAAVFEFC----------GHTTRTWN 242 (371)
Q Consensus 177 ~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~-~~~-~v~~~~~~~~~~-l~~~~~~~~~~~~----------dg~i~iwd 242 (371)
.++.|+. ...+.+||+......+..+..+. ... ....+.+ +++ ++.| +. -..+.+||
T Consensus 22 iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~G-------G~~~~~~~~~~~~~~v~~yd 92 (357)
T 2uvk_A 22 VYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFG-------GIGKNSEGLTQVFNDVHKYN 92 (357)
T ss_dssp EEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEEC-------CEEECTTSCEEECCCEEEEE
T ss_pred EEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEc-------CCCCCCCccceeeccEEEEe
Confidence 4445543 45688888875333344444333 111 2222222 345 4555 33 24688999
Q ss_pred CCCceEEEE--ee-cCCCcEEEEEEcCCeEEEEeCC
Q 041206 243 LDNLECVQT--LK-GHSDTVTSLLFWDEYLFSSSLD 275 (371)
Q Consensus 243 ~~~~~~~~~--~~-~~~~~v~~~~~~~~~l~s~~~d 275 (371)
+.+.+-... +. .......++.+.+.+++.|+.+
T Consensus 93 ~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 93 PKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp TTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred CCCCcEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 988654322 22 1112223344557777777754
No 335
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=84.60 E-value=28 Score=32.99 Aligned_cols=131 Identities=12% Similarity=-0.011 Sum_probs=65.0
Q ss_pred eEEEEeccCCCCcceeeEEEecCcceEEEEecCCce-eEecccceeeeeCCC--eEEEEECCCceEEEEe-----ecCCC
Q 041206 186 VISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTR-WNSKEEAAVFEFCGH--TTRTWNLDNLECVQTL-----KGHSD 257 (371)
Q Consensus 186 ~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~dg--~i~iwd~~~~~~~~~~-----~~~~~ 257 (371)
.+.+||..+.. +..+..+.....-.+++...+++ ++.| +.++ .+.+||+.+.+-...- .....
T Consensus 469 dv~~yd~~t~~--W~~~~~~p~~R~~h~~~~~~~~~iyv~G-------G~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~ 539 (695)
T 2zwa_A 469 DNWIFDMKTRE--WSMIKSLSHTRFRHSACSLPDGNVLILG-------GVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSL 539 (695)
T ss_dssp CCEEEETTTTE--EEECCCCSBCCBSCEEEECTTSCEEEEC-------CBCSSCSEEEEETTTTEEEECCCSSGGGGSCC
T ss_pred cEEEEeCCCCc--EEECCCCCCCcccceEEEEcCCEEEEEC-------CCCCCCCEEEEECCCCceEEccCCCCCCCccc
Confidence 47778877651 22222222211112222322455 5556 4433 7999999886643221 11111
Q ss_pred cEEEEEEc---CCeEEEEeC--C-----CcEEEEEccCCCC-------------cceecceEEEEecCCCCEEEEecC--
Q 041206 258 TVTSLLFW---DEYLFSSSL--D-----ETIKIWLYTHTKN-------------NAELSSLFGMLDAEAKPVLFSSGK-- 312 (371)
Q Consensus 258 ~v~~~~~~---~~~l~s~~~--d-----g~i~iwd~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~-- 312 (371)
...++.+. +..++.|+. + ..+.+||+....- .........+...+ +.+++.|+.
T Consensus 540 ~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~-~~iyv~GG~~~ 618 (695)
T 2zwa_A 540 VSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITP-RKLLIVGGTSP 618 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEET-TEEEEECCBCS
T ss_pred ceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCC-CEEEEECCccC
Confidence 22334445 446666665 2 3588888776651 00111112222221 346667763
Q ss_pred ------CCeEEEEEcCCcce
Q 041206 313 ------DSAIRLYELPSFKL 326 (371)
Q Consensus 313 ------d~~i~iwd~~~~~~ 326 (371)
...+.+||+.+.+-
T Consensus 619 ~~~~~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 619 SGLFDRTNSIISLDPLSETL 638 (695)
T ss_dssp SCCCCTTTSEEEEETTTTEE
T ss_pred CCCCCCCCeEEEEECCCCeE
Confidence 35699999987653
No 336
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=82.50 E-value=34 Score=32.39 Aligned_cols=180 Identities=9% Similarity=0.058 Sum_probs=89.3
Q ss_pred EEEEEeCC----CeEEEEeccCCCCcceeeE-E-----EecCcceEEEEecC-Cce-eEecccceeeeeCC------CeE
Q 041206 177 LLFAGSEG----GVISVWKGTFVANPFKQVA-S-----IRAPLWFCSLSSSN-DTR-WNSKEEAAVFEFCG------HTT 238 (371)
Q Consensus 177 ~l~~~~~d----g~v~iwd~~~~~~~~~~~~-~-----~~~~~~v~~~~~~~-~~~-l~~~~~~~~~~~~d------g~i 238 (371)
.++.|+.+ ..+.+||..+.. +..+. . +.....-.+++..+ +++ ++.| +.+ ..+
T Consensus 400 iyv~GG~~~~~~~~v~~yd~~~~~--W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~G-------G~~~~~~~~~dv 470 (695)
T 2zwa_A 400 VFYMGGSNPYRVNEILQLSIHYDK--IDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIG-------GRKAPHQGLSDN 470 (695)
T ss_dssp EEEECCBSSSBCCCEEEEEECSSC--EEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEEC-------CBSSTTCBCCCC
T ss_pred EEEECCCCCCCcCcEEEEECCCCe--EEEeccCCCCCCCCccccceEEEEEccCCEEEEEc-------CCCCCCCccccE
Confidence 66666643 457888887752 22222 1 11111122333332 555 5555 322 358
Q ss_pred EEEECCCceEEE--EeecCCCcEEEEEE-cCCeEEEEeCCC--cEEEEEccCCCC---------cceecceE-EEEecCC
Q 041206 239 RTWNLDNLECVQ--TLKGHSDTVTSLLF-WDEYLFSSSLDE--TIKIWLYTHTKN---------NAELSSLF-GMLDAEA 303 (371)
Q Consensus 239 ~iwd~~~~~~~~--~~~~~~~~v~~~~~-~~~~l~s~~~dg--~i~iwd~~~~~~---------~~~~~~~~-~~~~~~~ 303 (371)
.+||+.+.+-.. .+......-..+.+ .+..++.|+.++ .+.+||.....= ........ .+.....
T Consensus 471 ~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 471 WIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp EEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred EEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence 899998855432 22222222233443 467777777654 688888654320 11111222 2223332
Q ss_pred CCEEEEecC--C-----CeEEEEEcCCcc--------eeeee--cCCceEEEEEeCCCC-eEEeeCC--------CCcEE
Q 041206 304 KPVLFSSGK--D-----SAIRLYELPSFK--------LRARI--FSRREVEVDQIGPAG-LFFPGDA--------SGSVG 357 (371)
Q Consensus 304 ~~~l~~~~~--d-----~~i~iwd~~~~~--------~~~~~--~~~~~v~~~~~s~~~-~l~~~~~--------dg~i~ 357 (371)
+.+++.|+. + +.+.+||+.+.+ .+... ........+ ...++ +++.|+. ...+.
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK-YITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE-EEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE-EeCCCEEEEECCccCCCCCCCCCeEE
Confidence 446677765 2 468999988765 11111 111112222 33335 6666663 34688
Q ss_pred EEEccccce
Q 041206 358 VWKWLLAEQ 366 (371)
Q Consensus 358 iw~~~~~~~ 366 (371)
+||+.+.+-
T Consensus 630 ~yd~~t~~W 638 (695)
T 2zwa_A 630 SLDPLSETL 638 (695)
T ss_dssp EEETTTTEE
T ss_pred EEECCCCeE
Confidence 999876543
No 337
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=82.41 E-value=19 Score=29.53 Aligned_cols=225 Identities=12% Similarity=0.080 Sum_probs=118.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEE-EeCCCeeEEEeecCCEEEEecCCcEEEEEeCCC----------
Q 041206 98 AVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNV-ITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAA---------- 166 (371)
Q Consensus 98 ~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------- 166 (371)
.|..++....- .++. . ||.|..|-....-.+.. ......+..+.......++-.++.+..|-....
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~~G~v~~wG~n~~Gqlg~P~~~~ 101 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTVPAEAR 101 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEETTEEEEEECCTTSTTCCCGGGS
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEECCEEEEeeCCCCCCCCCCcccC
Confidence 57777765432 2333 4 89999997543221111 111234555554433332223777777765432
Q ss_pred -CeeEEEEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCceeEecccceeeeeCCCeEEEEECCC
Q 041206 167 -SVNALVVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDN 245 (371)
Q Consensus 167 -~v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~ 245 (371)
.|..++......+.-. +|.|+.|-.....+... .......|..++......++ - . ||.|+.|-...
T Consensus 102 ~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~---~~~~~~~i~~i~~G~~~~~~-l-------~-~G~v~~wG~n~ 168 (282)
T 3qhy_B 102 SGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTV---PAEAQSGVTALDGGVYTALA-V-------K-NGGVIAWGDNY 168 (282)
T ss_dssp SSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSC---CGGGGSSEEEEEECSSEEEE-E-------E-TTEEEEEECCT
T ss_pred CCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCC---CccCCCCeEEEEcccCEEEE-E-------E-CCEEEEecCCC
Confidence 6888888888555556 99999997655321100 00111145555443322222 2 4 78888887654
Q ss_pred ceEEEEeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCC----cceecceEEEEecCCCCEEEEecCCCeEEEEEc
Q 041206 246 LECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKN----NAELSSLFGMLDAEAKPVLFSSGKDSAIRLYEL 321 (371)
Q Consensus 246 ~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 321 (371)
...+..-..-...|..++.-....+.- .||.+..|-...... ......+..+...... .++.. ||.|+.|-.
T Consensus 169 ~gqlg~p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al~--~g~v~~wG~ 244 (282)
T 3qhy_B 169 FGQTTVPAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLALK--NGKVIAWGS 244 (282)
T ss_dssp TSTTSCCGGGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEEE--TTEEEEEST
T ss_pred CCCCCCceecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEEE--CCEEEEecC
Confidence 221111111234677887765544444 699999997543322 1112234434443333 34433 899999987
Q ss_pred CCcceeeeecCCceEEEEEeCCCC
Q 041206 322 PSFKLRARIFSRREVEVDQIGPAG 345 (371)
Q Consensus 322 ~~~~~~~~~~~~~~v~~~~~s~~~ 345 (371)
....++.. ...|..++..+..
T Consensus 245 n~~gq~~v---~~~v~~iaaG~~h 265 (282)
T 3qhy_B 245 SRTAPSSV---QSGVSSIEAGPNA 265 (282)
T ss_dssp TCCCCGGG---SSCEEEEEECSSC
T ss_pred CCCccccC---CCCcEEEEECcCe
Confidence 66443322 3356666665554
No 338
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=82.37 E-value=20 Score=29.72 Aligned_cols=127 Identities=9% Similarity=0.005 Sum_probs=61.0
Q ss_pred CeEEEEECCCceEEEE--eecCCCcEEEEEEcCCeEEEEeC------CCcEEEEEccCCCC------cceecceEEEEec
Q 041206 236 HTTRTWNLDNLECVQT--LKGHSDTVTSLLFWDEYLFSSSL------DETIKIWLYTHTKN------NAELSSLFGMLDA 301 (371)
Q Consensus 236 g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~------~~~~~~~~~~~~~ 301 (371)
..+.+||+.+.+-... +......-..+...+.+++.|+. -..+.+||+....= ......... ...
T Consensus 127 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~-~~~ 205 (318)
T 2woz_A 127 DSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGV-AIH 205 (318)
T ss_dssp EEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEE-EEE
T ss_pred ceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceE-EEE
Confidence 3688899987654322 11111111223344666666653 23588888665430 111111121 222
Q ss_pred CCCCEEEEecCC-----CeEEEEEcCCcc--eeeeecCCceEEEEEeCCCC-eEEeeCCC--------------CcEEEE
Q 041206 302 EAKPVLFSSGKD-----SAIRLYELPSFK--LRARIFSRREVEVDQIGPAG-LFFPGDAS--------------GSVGVW 359 (371)
Q Consensus 302 ~~~~~l~~~~~d-----~~i~iwd~~~~~--~~~~~~~~~~v~~~~~s~~~-~l~~~~~d--------------g~i~iw 359 (371)
+ +.+++.|+.+ ..+.+||+.+.+ .+..+.....-.++.. -++ +++.|+.+ ..+.+|
T Consensus 206 ~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~y 283 (318)
T 2woz_A 206 K-GKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS-LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKY 283 (318)
T ss_dssp T-TEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE-ETTEEEEECCBCCBC----CCBCCBCCCEEEE
T ss_pred C-CEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE-ECCEEEEECCeeccCCCCceeccceeeeEEEE
Confidence 3 3366666543 357789987754 2222221111112222 245 66666643 357788
Q ss_pred Eccccc
Q 041206 360 KWLLAE 365 (371)
Q Consensus 360 ~~~~~~ 365 (371)
|+.+.+
T Consensus 284 d~~~~~ 289 (318)
T 2woz_A 284 EDDKKE 289 (318)
T ss_dssp ETTTTE
T ss_pred eCCCCE
Confidence 887654
No 339
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=82.14 E-value=20 Score=29.46 Aligned_cols=189 Identities=14% Similarity=0.046 Sum_probs=100.4
Q ss_pred CCcEEEEEeCCC-----------CeeEEEEeCC-EEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecCCcee
Q 041206 155 PNAVKSWRVNAA-----------SVNALVVNND-LLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSNDTRW 222 (371)
Q Consensus 155 ~~~i~~~~~~~~-----------~v~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l 222 (371)
++.+..|-.... .|..++.... .++. . ||.|+.|-.....+.-.+. +....|..++.... ..
T Consensus 41 ~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P~---~~~~~v~~ia~G~~-hs 114 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVPA---EARSGVDAIAAGAW-AS 114 (282)
T ss_dssp TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCCG---GGSSSEEEEEEETT-EE
T ss_pred CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCCc---ccCCCeEEEECcCC-EE
Confidence 666666654432 6778887777 4444 5 9999999765432110000 00114444444332 12
Q ss_pred EecccceeeeeCCCeEEEEECCCceEEEEeecCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCCc----ceecceEEE
Q 041206 223 NSKEEAAVFEFCGHTTRTWNLDNLECVQTLKGHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKNN----AELSSLFGM 298 (371)
Q Consensus 223 ~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~ 298 (371)
++- . +|.|+.|-....-.+-.-......|..++.-....+.-. ||.+..|-....... .....+..+
T Consensus 115 ~al-------~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i 185 (282)
T 3qhy_B 115 YAL-------K-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDV 185 (282)
T ss_dssp EEE-------E-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEE
T ss_pred EEE-------e-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCceecCCCeEEE
Confidence 222 7 999999976542211111112346777777655444444 799999975443221 111234433
Q ss_pred EecCCCCEEEEecCCCeEEEEEcCCcceeee-ecCCceEEEEEeCCCCeEEeeCCCCcEEEEEccc
Q 041206 299 LDAEAKPVLFSSGKDSAIRLYELPSFKLRAR-IFSRREVEVDQIGPAGLFFPGDASGSVGVWKWLL 363 (371)
Q Consensus 299 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~~ 363 (371)
...... .++. .||.|+.|-....-.+.. ......|..++...+..++.. ||.|+.|-...
T Consensus 186 ~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 186 AGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK--NGKVIAWGSSR 246 (282)
T ss_dssp EECSSE-EEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE--TTEEEEESTTC
T ss_pred EecCCE-EEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE--CCEEEEecCCC
Confidence 333332 3333 599999998665332221 112345777776655533333 88888886544
No 340
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=82.12 E-value=20 Score=29.67 Aligned_cols=51 Identities=6% Similarity=0.096 Sum_probs=28.3
Q ss_pred CeEEEEECCCceEEEE--eecCCCcEEEEEEcCCeEEEEeCCC-----cEEEEEccCC
Q 041206 236 HTTRTWNLDNLECVQT--LKGHSDTVTSLLFWDEYLFSSSLDE-----TIKIWLYTHT 286 (371)
Q Consensus 236 g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~dg-----~i~iwd~~~~ 286 (371)
..+.+||+.+.+-... +.........+.+.+..++.|+.++ .+.+||+...
T Consensus 175 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 175 NRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred ceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCC
Confidence 4689999988654322 2211122233444566667776432 4677886554
No 341
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=81.20 E-value=2.7 Score=41.50 Aligned_cols=40 Identities=25% Similarity=0.261 Sum_probs=35.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC
Q 041206 97 KAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN 136 (371)
Q Consensus 97 ~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 136 (371)
..|.+++..++..++++-+.|+++|+|++.+++++.+...
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 3577888888889999999999999999999999988654
No 342
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=80.91 E-value=25 Score=29.91 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=63.4
Q ss_pred eEeeeCccCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCe
Q 041206 89 LMKLNGHKKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASV 168 (371)
Q Consensus 89 ~~~l~~h~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v 168 (371)
+..+-..-.....|+|.|+|+++++--..|.|++++..+++......... + +.-..+..
T Consensus 24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~-v--------------------~~~g~~Gl 82 (347)
T 3das_A 24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPG-V--------------------SPSGEGGL 82 (347)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTT-C--------------------CCBTTBSE
T ss_pred eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCc-e--------------------eecCCCCc
Confidence 44444445567899999999877776658999999866665422111100 0 00012346
Q ss_pred eEEEEeCC-----EEEEE---eCCCeEEEEeccCCC-------CcceeeEEEecC-c-ceEEEEecCCceeE
Q 041206 169 NALVVNND-----LLFAG---SEGGVISVWKGTFVA-------NPFKQVASIRAP-L-WFCSLSSSNDTRWN 223 (371)
Q Consensus 169 ~~~~~~~~-----~l~~~---~~dg~v~iwd~~~~~-------~~~~~~~~~~~~-~-~v~~~~~~~~~~l~ 223 (371)
..|+++|+ .|++. ..++.|.-|.+.... .....+..+... . ....|+|.|||.|+
T Consensus 83 lGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Ly 154 (347)
T 3das_A 83 LGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLY 154 (347)
T ss_dssp EEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEE
T ss_pred eeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEE
Confidence 78888874 34332 234566666655421 111122223221 1 45679999999743
No 343
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=77.10 E-value=32 Score=28.96 Aligned_cols=170 Identities=12% Similarity=-0.004 Sum_probs=85.9
Q ss_pred EEEEEeCCCeEEEEeccCCCCcc---eeeEEEecCcceEEE-EecCCceeEecccceeeeeCCCeEEEEECC--C-----
Q 041206 177 LLFAGSEGGVISVWKGTFVANPF---KQVASIRAPLWFCSL-SSSNDTRWNSKEEAAVFEFCGHTTRTWNLD--N----- 245 (371)
Q Consensus 177 ~l~~~~~dg~v~iwd~~~~~~~~---~~~~~~~~~~~v~~~-~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~--~----- 245 (371)
.++..+.+|.++--.+....... .....++....+..+ ....+..++.. +..|.+..+... .
T Consensus 111 ~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~-------T~~G~~~rf~~~~~eip~~g 183 (327)
T 3uc1_A 111 YLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLV-------SANGQSIRFSATDEALRPMG 183 (327)
T ss_dssp EEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEE-------ETTSEEEEEECCTTTSCCCC
T ss_pred EEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEE-------ECCCeEEEEECcccccCcCC
Confidence 89999999999999876642211 111223333333333 33333446666 889998888776 3
Q ss_pred ----ceEEEEeecCCCcEEEEEEc--CCeEEEEeCCCcEEEEEccCCCC-----ccee--------cceEEEEecCCCCE
Q 041206 246 ----LECVQTLKGHSDTVTSLLFW--DEYLFSSSLDETIKIWLYTHTKN-----NAEL--------SSLFGMLDAEAKPV 306 (371)
Q Consensus 246 ----~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~-----~~~~--------~~~~~~~~~~~~~~ 306 (371)
|.....+. ....|.++... +.+++..+..|.++.-.+..... .+.. ..+..+....+...
T Consensus 184 r~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~ 262 (327)
T 3uc1_A 184 RATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSE 262 (327)
T ss_dssp TTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCE
T ss_pred cCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCcc
Confidence 22222233 24456666554 56899999999999888543221 0100 11222222223335
Q ss_pred EEEecCCCeEEEEEcCCcceee---------eecCCceEEEEEeCCCC--eEEeeCCCC
Q 041206 307 LFSSGKDSAIRLYELPSFKLRA---------RIFSRREVEVDQIGPAG--LFFPGDASG 354 (371)
Q Consensus 307 l~~~~~d~~i~iwd~~~~~~~~---------~~~~~~~v~~~~~s~~~--~l~~~~~dg 354 (371)
++..+.+|.+.-++...-.... .+.....|.++...+.. .+.+.+.+|
T Consensus 263 i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~~~~~g 321 (327)
T 3uc1_A 263 LYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDANG 321 (327)
T ss_dssp EEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC-------------
T ss_pred EEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEEEecCC
Confidence 5556667777777665432222 22224556666655443 555555554
No 344
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=76.10 E-value=42 Score=29.78 Aligned_cols=35 Identities=9% Similarity=0.083 Sum_probs=25.3
Q ss_pred cCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 041206 96 KKAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRC 130 (371)
Q Consensus 96 ~~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 130 (371)
-.....|+|.|+|+++++-...+.|++++..+++.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~ 60 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSV 60 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE
Confidence 34567999999998777755445788887655554
No 345
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=74.92 E-value=37 Score=28.59 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=25.5
Q ss_pred CCCEEEEEeC-C---------CcEEEEECCCCceEEEEeCC-C---eeEEEeecCCEEEEe
Q 041206 107 GSNKLYSGSR-D---------GRVSVWDRDSGRCVNVITNG-A---EIGCLISEGSWVFLG 153 (371)
Q Consensus 107 ~~~~l~s~~~-d---------g~v~iwd~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~ 153 (371)
++++++.|+. + ..+.+||..+.+-....... . ...+...++++++.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~G 125 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTG 125 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEE
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEe
Confidence 4667777765 2 46889998887543322211 1 122333556655554
No 346
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=73.51 E-value=2.8 Score=42.33 Aligned_cols=39 Identities=26% Similarity=0.261 Sum_probs=33.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC
Q 041206 98 AVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN 136 (371)
Q Consensus 98 ~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 136 (371)
.+.+++..++..++++-+.|+++|+|++.+++++.+...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 455666677889999999999999999999999988664
No 347
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=72.20 E-value=7 Score=36.83 Aligned_cols=38 Identities=11% Similarity=0.115 Sum_probs=31.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeC
Q 041206 97 KAVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITN 136 (371)
Q Consensus 97 ~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 136 (371)
..|.++.+. ..++++-+.|.++|+|++.+++++.+...
T Consensus 222 ~~Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFH--ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEET--TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccC--CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 346665553 67999999999999999999999988776
No 348
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=72.20 E-value=49 Score=28.74 Aligned_cols=253 Identities=11% Similarity=0.090 Sum_probs=128.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-Cc---------eE-EEEe--CCCeeEEEeecCCEEE-EecC-CcEEEE
Q 041206 97 KAVTNVGLPSGSNKLYSGSRDGRVSVWDRDS-GR---------CV-NVIT--NGAEIGCLISEGSWVF-LGLP-NAVKSW 161 (371)
Q Consensus 97 ~~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~---------~~-~~~~--~~~~~~~~~~~~~~~~-~~~~-~~i~~~ 161 (371)
..|..++.- ....+.-..||.|..|=... ++ .. ..+. ....+..+.......+ ...+ +.+..|
T Consensus 16 ~~v~~ia~G--~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~w 93 (406)
T 4d9s_A 16 RKVLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSW 93 (406)
T ss_dssp CCEEEEEEC--SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEE
T ss_pred cceEEEecC--CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEE
Confidence 456666654 33444555688888885432 11 11 1111 1234555555443333 3344 367666
Q ss_pred EeCC-----------------------CCeeEEEEeCCEEEEEeCCCeEEEEeccCCCCc-------ceeeEEEecCc--
Q 041206 162 RVNA-----------------------ASVNALVVNNDLLFAGSEGGVISVWKGTFVANP-------FKQVASIRAPL-- 209 (371)
Q Consensus 162 ~~~~-----------------------~~v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-------~~~~~~~~~~~-- 209 (371)
-... ..|..++......+.-..+|.|+.|-.....+. ......+....
T Consensus 94 G~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~ 173 (406)
T 4d9s_A 94 GWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI 173 (406)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTC
T ss_pred cCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCC
Confidence 4321 156777776667777788999999965432110 00011111111
Q ss_pred ceEEEEecCCceeEecccceeeeeCCCeEEEEECCCc----------eEE-EEee-cCCCcEEEEEEcCCeEEEEeCCCc
Q 041206 210 WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDNL----------ECV-QTLK-GHSDTVTSLLFWDEYLFSSSLDET 277 (371)
Q Consensus 210 ~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~~----------~~~-~~~~-~~~~~v~~~~~~~~~l~s~~~dg~ 277 (371)
.|..++... ...+....+|.|+.|-.... ... ..+. .....|..++.-..+.+.-..+|.
T Consensus 174 ~i~~va~G~--------~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~ 245 (406)
T 4d9s_A 174 RIKMVAAGA--------EHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 245 (406)
T ss_dssp CEEEEEECS--------SEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCC
T ss_pred cEEEEecCC--------CeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCC
Confidence 344444333 22222278999999964321 111 1111 122467777777777777789999
Q ss_pred EEEEEccCCCCcc-----------ee---c--ceEEEEecCCCCEEEEecCCCeEEEEEcCCccee-----------e--
Q 041206 278 IKIWLYTHTKNNA-----------EL---S--SLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLR-----------A-- 328 (371)
Q Consensus 278 i~iwd~~~~~~~~-----------~~---~--~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----------~-- 328 (371)
|..|-.......+ .+ . .+..+.. +....++-..||.|+.|-....-.+ .
T Consensus 246 v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~--G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v 323 (406)
T 4d9s_A 246 LYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISG--GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQV 323 (406)
T ss_dssp EEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEE
T ss_pred EEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEe--cCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEE
Confidence 9999743322110 00 0 1222221 2224445567899999975542111 0
Q ss_pred eecCCceEEEEEeCCCCeEEeeCCCCcEEEEEcc
Q 041206 329 RIFSRREVEVDQIGPAGLFFPGDASGSVGVWKWL 362 (371)
Q Consensus 329 ~~~~~~~v~~~~~s~~~~l~~~~~dg~i~iw~~~ 362 (371)
.+.....|..++.... ..++-..||.|+.|=..
T Consensus 324 ~~~~~~~v~~va~G~~-hs~alt~~G~v~~wG~n 356 (406)
T 4d9s_A 324 RFPDDQKVVQVSCGWR-HTLAVTERNNVFAWGRG 356 (406)
T ss_dssp CCGGGCCEEEEEECSS-EEEEEETTSCEEEEECC
T ss_pred eccCCCcEEEEEeCCC-eEEEEeCCCCEEEecCC
Confidence 1112345666766444 33344578899999754
No 349
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=70.67 E-value=58 Score=28.99 Aligned_cols=30 Identities=10% Similarity=0.233 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 041206 97 KAVTNVGLPSGSN-KLYSGSRDGRVSVWDRD 126 (371)
Q Consensus 97 ~~V~~~~~~~~~~-~l~s~~~dg~v~iwd~~ 126 (371)
..-..|+|.|++. .|+.+...|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 3567999999996 56666778999999743
No 350
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=61.54 E-value=31 Score=34.87 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=21.1
Q ss_pred cCCCCEEEEecCCCeEEEEEcCCcceeeee
Q 041206 301 AEAKPVLFSSGKDSAIRLYELPSFKLRARI 330 (371)
Q Consensus 301 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 330 (371)
.++..++++-+.|+++|+|++.+++++...
T Consensus 246 ~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 246 LSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp ETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred cCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 344457778888888888888877766543
No 351
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=56.58 E-value=90 Score=26.36 Aligned_cols=49 Identities=10% Similarity=0.079 Sum_probs=34.3
Q ss_pred ceEEEEecCCce-eEecccceeeeeCCCeEEEEECCCceEEEE---e----ecCCCcEEEEEEcC
Q 041206 210 WFCSLSSSNDTR-WNSKEEAAVFEFCGHTTRTWNLDNLECVQT---L----KGHSDTVTSLLFWD 266 (371)
Q Consensus 210 ~v~~~~~~~~~~-l~~~~~~~~~~~~dg~i~iwd~~~~~~~~~---~----~~~~~~v~~~~~~~ 266 (371)
....+++.|+++ ++.+ ...|.|++++.. ++.... + .........+++++
T Consensus 19 ~P~~i~~~pdG~~l~V~-------e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~p 75 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLIT-------LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAP 75 (353)
T ss_dssp SEEEEEECSTTCCEEEE-------ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECT
T ss_pred CcEEEEEcCCCCEEEEE-------eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECC
Confidence 678999999998 8888 888999999864 332111 1 11234568899984
No 352
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=53.41 E-value=1.2e+02 Score=26.81 Aligned_cols=50 Identities=10% Similarity=-0.079 Sum_probs=34.3
Q ss_pred ceEEEEecCCceeEecccceeeeeCCC-eEEEEECCCceE--EEEeec------CCCcEEEEEEcC
Q 041206 210 WFCSLSSSNDTRWNSKEEAAVFEFCGH-TTRTWNLDNLEC--VQTLKG------HSDTVTSLLFWD 266 (371)
Q Consensus 210 ~v~~~~~~~~~~l~~~~~~~~~~~~dg-~i~iwd~~~~~~--~~~~~~------~~~~v~~~~~~~ 266 (371)
....++|.|+|+++++ ...+ .|++++..+++. +..+.. .......|+|++
T Consensus 28 ~P~~~a~~pdG~l~V~-------e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~P 86 (454)
T 1cru_A 28 KPHALLWGPDNQIWLT-------ERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP 86 (454)
T ss_dssp SEEEEEECTTSCEEEE-------ETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT
T ss_pred CceEEEEcCCCcEEEE-------EcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECC
Confidence 6679999999997777 6665 788888765543 222221 245677999983
No 353
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=47.82 E-value=35 Score=32.23 Aligned_cols=36 Identities=8% Similarity=0.212 Sum_probs=28.4
Q ss_pred eeEEEEeCCEEEEEeCCCeEEEEeccCCCCcceeeEEEec
Q 041206 168 VNALVVNNDLLFAGSEGGVISVWKGTFVANPFKQVASIRA 207 (371)
Q Consensus 168 v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 207 (371)
|.++.+...++++-+.|.++|+|++.++ +++....-
T Consensus 224 Is~~~~~~~fLftL~~Dh~LRiWsL~t~----~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLFHERYLIVLTQNCHLKIWDLTSF----TLIQDYDM 259 (729)
T ss_dssp EEEEEETTTEEEEEETTCEEEEEETTTT----EEEEEEET
T ss_pred EEEeccCCcEEEEEEcCCeEEEEEcCCC----ceEEeecc
Confidence 5555555559999999999999999998 66666554
No 354
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=43.37 E-value=1.6e+02 Score=25.38 Aligned_cols=186 Identities=10% Similarity=0.126 Sum_probs=95.8
Q ss_pred CeeEEEEeCCEEEEEeCCCeEEEEeccCCCC------c-ceeeEEEecC-c-ceEEEEecCCceeEecccceeeeeCCCe
Q 041206 167 SVNALVVNNDLLFAGSEGGVISVWKGTFVAN------P-FKQVASIRAP-L-WFCSLSSSNDTRWNSKEEAAVFEFCGHT 237 (371)
Q Consensus 167 ~v~~~~~~~~~l~~~~~dg~v~iwd~~~~~~------~-~~~~~~~~~~-~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~ 237 (371)
.|..++.-....+.-..+|.|+.|-.....+ . ......+... . .|..++...+..++.. ..++.
T Consensus 17 ~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~-------~~gg~ 89 (406)
T 4d9s_A 17 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYS-------QSGME 89 (406)
T ss_dssp CEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEE-------TTTTE
T ss_pred ceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEE-------CCCCE
Confidence 4667777777666677889999996443211 0 0011111111 1 4555554443333322 33458
Q ss_pred EEEEECCCc---------eEE--EEee-cCCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCCc-----------ceec-
Q 041206 238 TRTWNLDNL---------ECV--QTLK-GHSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKNN-----------AELS- 293 (371)
Q Consensus 238 i~iwd~~~~---------~~~--~~~~-~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~- 293 (371)
|+.|-.... ... ..+. .....|..++.-..+.+.-..||.|+.|-....... ..+.
T Consensus 90 v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~ 169 (406)
T 4d9s_A 90 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA 169 (406)
T ss_dssp EEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGG
T ss_pred EEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecc
Confidence 999964321 000 1111 123368888777777777889999999974332210 0000
Q ss_pred ----ceEEEEecCCCCEEEEecCCCeEEEEEcCCccee-----------eeec--CCceEEEEEeCCCCeEEeeCCCCcE
Q 041206 294 ----SLFGMLDAEAKPVLFSSGKDSAIRLYELPSFKLR-----------ARIF--SRREVEVDQIGPAGLFFPGDASGSV 356 (371)
Q Consensus 294 ----~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----------~~~~--~~~~v~~~~~s~~~~l~~~~~dg~i 356 (371)
.+..+.. +....++-..+|.|+.|-....-.+ ..+. ....|..++...+ ..++-..||.|
T Consensus 170 ~~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~-ht~~l~~~G~v 246 (406)
T 4d9s_A 170 FEGIRIKMVAA--GAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWR-HTISVSYSGAL 246 (406)
T ss_dssp GTTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSS-EEEEEETTCCE
T ss_pred cCCCcEEEEec--CCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCC-cEEEEcCCCCE
Confidence 1222222 2234555567899999975432111 1111 1345666666444 33344578888
Q ss_pred EEEEcc
Q 041206 357 GVWKWL 362 (371)
Q Consensus 357 ~iw~~~ 362 (371)
+.|-..
T Consensus 247 ~~wG~n 252 (406)
T 4d9s_A 247 YTYGWS 252 (406)
T ss_dssp EEEECC
T ss_pred EEeeCC
Confidence 888653
No 355
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=42.99 E-value=1.5e+02 Score=24.93 Aligned_cols=69 Identities=10% Similarity=-0.051 Sum_probs=44.1
Q ss_pred CeeEEEEeCC-EEEEEeCCCeEEEEeccCCCCcceeeEEEe---cCc-ceEEEEecCC----ceeEecccceeeeeC-C-
Q 041206 167 SVNALVVNND-LLFAGSEGGVISVWKGTFVANPFKQVASIR---APL-WFCSLSSSND----TRWNSKEEAAVFEFC-G- 235 (371)
Q Consensus 167 ~v~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---~~~-~v~~~~~~~~----~~l~~~~~~~~~~~~-d- 235 (371)
....+++.|+ .++++..+|.|.+++ .+. .+.+..+. ... ....++++|+ +.++.+ .. .
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~--~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~-------~~~~~ 100 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGR--LSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAY-------RTVAE 100 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTE--EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE-------EEECT
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCC--ccEeecceEeecCCCCceeEEECCCCCCCCEEEEE-------EecCC
Confidence 4678999888 677777789999998 331 12222222 113 7889999998 455544 32 2
Q ss_pred ----CeEEEEECCCc
Q 041206 236 ----HTTRTWNLDNL 246 (371)
Q Consensus 236 ----g~i~iwd~~~~ 246 (371)
+.|..++...+
T Consensus 101 ~~~~~~v~r~~~~~~ 115 (352)
T 2ism_A 101 GGLRNQVVRLRHLGE 115 (352)
T ss_dssp TSSEEEEEEEEECSS
T ss_pred CCCccEEEEEEeCCC
Confidence 67888887643
No 356
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=42.16 E-value=2.1e+02 Score=26.39 Aligned_cols=88 Identities=15% Similarity=0.101 Sum_probs=56.1
Q ss_pred CCCeeEEEEeCC---EEEEEeCCCeEEEEeccCCCC--------ccee-eEEEecCcceEEEEecCCcee-Eecccceee
Q 041206 165 AASVNALVVNND---LLFAGSEGGVISVWKGTFVAN--------PFKQ-VASIRAPLWFCSLSSSNDTRW-NSKEEAAVF 231 (371)
Q Consensus 165 ~~~v~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~--------~~~~-~~~~~~~~~v~~~~~~~~~~l-~~~~~~~~~ 231 (371)
......+..+|+ .++.|-.+.++.++|++.... +... ....+........+|.++|.. .+-
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtl------ 395 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTL------ 395 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEE------
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeee------
Confidence 335677888888 455555688999999885210 0011 122221117789999999974 444
Q ss_pred eeCCCeEEEEECCCc----------eEEEEeecCCCcE
Q 041206 232 EFCGHTTRTWNLDNL----------ECVQTLKGHSDTV 259 (371)
Q Consensus 232 ~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v 259 (371)
.-|..|.-|++... ..+..+.-|-.+-
T Consensus 396 -fidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpG 432 (638)
T 3sbq_A 396 -FIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG 432 (638)
T ss_dssp -TTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE
T ss_pred -eecceEEEEeccHHHHHhcCccCCeeeeccccccCCc
Confidence 67999999999753 4556666555433
No 357
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=41.41 E-value=69 Score=29.44 Aligned_cols=66 Identities=8% Similarity=-0.038 Sum_probs=47.4
Q ss_pred EecCCCCEEEEecCCCeEEEEEcCCcce-------------eeeecCCceEEEEEeCCCC-eEEeeCCCCcEEEEEcccc
Q 041206 299 LDAEAKPVLFSSGKDSAIRLYELPSFKL-------------RARIFSRREVEVDQIGPAG-LFFPGDASGSVGVWKWLLA 364 (371)
Q Consensus 299 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~-------------~~~~~~~~~v~~~~~s~~~-~l~~~~~dg~i~iw~~~~~ 364 (371)
..|++..++++|-.+.++.++|++.... ..+....-.....+|.++| ...+---|..|.-|++...
T Consensus 330 vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 330 TSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp ECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred eCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 5566665566667789999999985321 2233334556889999999 6677778999999999764
No 358
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=39.93 E-value=1.7e+02 Score=24.74 Aligned_cols=69 Identities=9% Similarity=-0.003 Sum_probs=44.3
Q ss_pred ceEEEEecCCceeEecccceeeeeC-CCeEEEEECCCceE--EEEe----ecCCCcEEEEEEcC-----CeEEEE---eC
Q 041206 210 WFCSLSSSNDTRWNSKEEAAVFEFC-GHTTRTWNLDNLEC--VQTL----KGHSDTVTSLLFWD-----EYLFSS---SL 274 (371)
Q Consensus 210 ~v~~~~~~~~~~l~~~~~~~~~~~~-dg~i~iwd~~~~~~--~~~~----~~~~~~v~~~~~~~-----~~l~s~---~~ 274 (371)
....+++.|+|.++.+ .. .|.|++++..+++. +..+ .........|++++ .+|... ..
T Consensus 33 ~P~~ia~~pdG~llVt-------er~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 33 SPWGLAPLPGGDLLVS-------SRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp SEEEEEECTTSCEEEE-------ETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred CceEEEEcCCCcEEEE-------EecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 6789999999987666 66 89999998765543 2222 12345678999974 344332 23
Q ss_pred CCcEEEEEccC
Q 041206 275 DETIKIWLYTH 285 (371)
Q Consensus 275 dg~i~iwd~~~ 285 (371)
++.|.-|.+..
T Consensus 106 ~~~v~R~~~~~ 116 (347)
T 3das_A 106 DNRIVRMLYDE 116 (347)
T ss_dssp SEEEEEEEBCT
T ss_pred CCEEEEEEeCC
Confidence 44555555543
No 359
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=38.46 E-value=1.8e+02 Score=24.67 Aligned_cols=97 Identities=8% Similarity=-0.078 Sum_probs=49.4
Q ss_pred EEEEEeCCCeEEEEeccCCCCcceeeEEEecCcceEEEEecC--CceeEecccceeeeeCCC----eEEEEECC--CceE
Q 041206 177 LLFAGSEGGVISVWKGTFVANPFKQVASIRAPLWFCSLSSSN--DTRWNSKEEAAVFEFCGH----TTRTWNLD--NLEC 248 (371)
Q Consensus 177 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~~~~~~~~dg----~i~iwd~~--~~~~ 248 (371)
.|.+|+..| +.+++.......++..........|.+|++.| ++.++++ +..| .|...+-. +.+.
T Consensus 24 ~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g-------~~~g~~g~gl~~s~D~G~tW~~ 95 (394)
T 3b7f_A 24 MLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMA-------ARTGHLGPTVFRSDDGGGNWTE 95 (394)
T ss_dssp EEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEE-------EEC--CCEEEEEESSTTSCCEE
T ss_pred EEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEE-------ecCCCCCccEEEeCCCCCCceE
Confidence 777888776 55555433212233322111222899999998 5566666 5554 44433211 1122
Q ss_pred EEE---eec--------CCCcEEEEEEc----CCeEEEEeCCCcEEEE
Q 041206 249 VQT---LKG--------HSDTVTSLLFW----DEYLFSSSLDETIKIW 281 (371)
Q Consensus 249 ~~~---~~~--------~~~~v~~~~~~----~~~l~s~~~dg~i~iw 281 (371)
+.. +.. ....|.++++. ++.++.+...+.|...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S 143 (394)
T 3b7f_A 96 ATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRS 143 (394)
T ss_dssp CSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEE
T ss_pred CCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEE
Confidence 211 111 11257778886 4667766666655544
No 360
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=28.16 E-value=2.8e+02 Score=23.62 Aligned_cols=202 Identities=9% Similarity=0.107 Sum_probs=101.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEeCCCeeEEEeecCCEEEEecCCcEEEEEeCCCCeeEEEEeCCE
Q 041206 98 AVTNVGLPSGSNKLYSGSRDGRVSVWDRDSGRCVNVITNGAEIGCLISEGSWVFLGLPNAVKSWRVNAASVNALVVNNDL 177 (371)
Q Consensus 98 ~V~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~ 177 (371)
.+..++++......+.-..||.|..|-....-.+.. ........+ ..+-.+....|..++.....
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~---g~~~~~~~p------------~~v~~l~~~~i~~va~G~~h 170 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH---GNRSPCDRP------------RVIESLRGIEVVDVAAGGAH 170 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS---SSCCCEEEE------------EECGGGTTSCEEEEEECSSE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC---CCCccCcCC------------eEecccCCCeEEEEEeCcCe
Confidence 455667777667777778899999996432110000 000000000 00000112246677776676
Q ss_pred EEEEeCCCeEEEEeccCCCC------c-ceeeEEEecC-c-ceEEEEecC-CceeEecccceeeeeCCCeEEEEECCCc-
Q 041206 178 LFAGSEGGVISVWKGTFVAN------P-FKQVASIRAP-L-WFCSLSSSN-DTRWNSKEEAAVFEFCGHTTRTWNLDNL- 246 (371)
Q Consensus 178 l~~~~~dg~v~iwd~~~~~~------~-~~~~~~~~~~-~-~v~~~~~~~-~~~l~~~~~~~~~~~~dg~i~iwd~~~~- 246 (371)
.+.-..+|.|+.|-.....+ . ......+... . .|..++... +...++- ..+|.|+.|-....
T Consensus 171 s~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l-------~~~G~v~~wG~n~~G 243 (389)
T 3kci_A 171 SACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCL-------TDDDTVWSWGDGDYG 243 (389)
T ss_dssp EEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEE-------ETTTEEEEEECCGGG
T ss_pred EEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEE-------ccCCEEEEEeCCCCC
Confidence 67777899999996543110 0 0011111111 1 455555443 2233333 78899999965421
Q ss_pred ----------eEEEEeec-CCCcEEEEEEcCCeEEEEeCCCcEEEEEccCCCC------c-----cee-----cceEEEE
Q 041206 247 ----------ECVQTLKG-HSDTVTSLLFWDEYLFSSSLDETIKIWLYTHTKN------N-----AEL-----SSLFGML 299 (371)
Q Consensus 247 ----------~~~~~~~~-~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~-----~~~-----~~~~~~~ 299 (371)
.....+.. ....|..++.-..+.+.-..||.|..|-...... . ..+ ..+..+.
T Consensus 244 qLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia 323 (389)
T 3kci_A 244 KLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIA 323 (389)
T ss_dssp TTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEE
T ss_pred CCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEE
Confidence 01111111 1235777777677777778999999997432111 0 000 0122222
Q ss_pred ecCCCCEEEEecCCCeEEEEEcCC
Q 041206 300 DAEAKPVLFSSGKDSAIRLYELPS 323 (371)
Q Consensus 300 ~~~~~~~l~~~~~d~~i~iwd~~~ 323 (371)
. +....++-..||.|+.|-...
T Consensus 324 ~--G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 324 T--GSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp E--CSSEEEEEETTCCEEEEECCT
T ss_pred e--ccCeEEEECCCCCEEEeeCCC
Confidence 2 222444556789999998765
No 361
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=25.24 E-value=3e+02 Score=25.33 Aligned_cols=55 Identities=15% Similarity=0.083 Sum_probs=33.4
Q ss_pred CeeEEEEeCC-EEEEEeCC-------------CeEEEEeccCCCCcceeeEEEecCc--ceEEEEecCCce-eEec
Q 041206 167 SVNALVVNND-LLFAGSEG-------------GVISVWKGTFVANPFKQVASIRAPL--WFCSLSSSNDTR-WNSK 225 (371)
Q Consensus 167 ~v~~~~~~~~-~l~~~~~d-------------g~v~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~-l~~~ 225 (371)
....|.|+++ .|..++.. ..|..++..++ +....+.... .++.++|+||++ |++.
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tG----el~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG----EIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTC----CEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCC----eEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 4667888877 44443221 25666666555 4444444443 789999999986 4443
No 362
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=24.80 E-value=2.8e+02 Score=22.44 Aligned_cols=142 Identities=10% Similarity=0.031 Sum_probs=0.0
Q ss_pred EEEEEeCCCeEEEEeccC------CCCcceeeEEEecCc-ceEEEEecCCceeEecccceeeeeCCCeEEEEECCC----
Q 041206 177 LLFAGSEGGVISVWKGTF------VANPFKQVASIRAPL-WFCSLSSSNDTRWNSKEEAAVFEFCGHTTRTWNLDN---- 245 (371)
Q Consensus 177 ~l~~~~~dg~v~iwd~~~------~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~~~~~~~~dg~i~iwd~~~---- 245 (371)
.++..+.+|.++-..+.. + .....++... -+.....+.+..++.. +..|.+..+....
T Consensus 82 ~~v~~T~~G~iKr~~l~~~~~~~~G----~~~i~lkegD~l~~~~~~~~~~~ill~-------T~~G~~~r~~~~eip~~ 150 (276)
T 3no0_A 82 RLLLATKKGYVKKIPLAEFEYKAQG----MPIIKLTEGDEVVSIASSVDETHILLF-------TKKGRVARFSVREVPPS 150 (276)
T ss_dssp EEEEEETTSEEEEEEGGGTTTCSTT----EECSCCCTTCCEEEEEECCSSCEEEEE-------ETTSEEEEEEGGGSCBC
T ss_pred EEEEEeCCCEEEEEEHHHhhhhcCC----eEEEecCCCCEEEEEEEeCCCCEEEEE-------ECCCEEEEEEhhhCCCc
Q ss_pred -----ceEEEEeecCCCcEEEEEEc-CCeEEEEeCCCcEEEEEccCCCCccee----------cceEEEEecCCCCEEEE
Q 041206 246 -----LECVQTLKGHSDTVTSLLFW-DEYLFSSSLDETIKIWLYTHTKNNAEL----------SSLFGMLDAEAKPVLFS 309 (371)
Q Consensus 246 -----~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~----------~~~~~~~~~~~~~~l~~ 309 (371)
|.....+.....-+..+... +.+++..+..|.++...+..-.....- ..+..+....+...++.
T Consensus 151 gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~ 230 (276)
T 3no0_A 151 TPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLI 230 (276)
T ss_dssp CTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEE
T ss_pred CCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEE
Q ss_pred ecCCCeEEE--EEcCCcceeee
Q 041206 310 SGKDSAIRL--YELPSFKLRAR 329 (371)
Q Consensus 310 ~~~d~~i~i--wd~~~~~~~~~ 329 (371)
.+.+|.+.. ++...-....+
T Consensus 231 ~t~~G~~ir~~~~~~~i~~~~R 252 (276)
T 3no0_A 231 TTKNGKAFYDKINQKDIPLSTK 252 (276)
T ss_dssp EETTSCEEEEEEEGGGSCBCCT
T ss_pred EcCCCeEEEeeeCHHHCCCcCC
No 363
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=21.51 E-value=4.7e+02 Score=23.93 Aligned_cols=53 Identities=9% Similarity=0.248 Sum_probs=37.6
Q ss_pred CCeEEEEEcCCcceeeeecCC------c---eEEEEEeCCCC---eEEeeCCCCcEEEEEccccc
Q 041206 313 DSAIRLYELPSFKLRARIFSR------R---EVEVDQIGPAG---LFFPGDASGSVGVWKWLLAE 365 (371)
Q Consensus 313 d~~i~iwd~~~~~~~~~~~~~------~---~v~~~~~s~~~---~l~~~~~dg~i~iw~~~~~~ 365 (371)
...|.+.|+.++.++.++... . .+.-+....|+ .+.+|...|.|.-+|+....
T Consensus 222 ~~~Lyv~d~~tG~li~~i~~~~~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~~ 286 (570)
T 3hx6_A 222 KAALLIIDMETGAITRKLEVTGRTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAGK 286 (570)
T ss_dssp CEEEEEEETTTCCEEEEEEECCSTTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCSS
T ss_pred ccEEEEEECCCCceEEEEecCCCCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCCC
Confidence 357999999999988876521 2 23333334455 89999999999888887643
No 364
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=20.93 E-value=2.9e+02 Score=25.46 Aligned_cols=52 Identities=13% Similarity=0.092 Sum_probs=31.4
Q ss_pred eEEEEeCC-EEEEEeCC-------------CeEEEEeccCCCCcceeeEEEecCc--ceEEEEecCCce-eEe
Q 041206 169 NALVVNND-LLFAGSEG-------------GVISVWKGTFVANPFKQVASIRAPL--WFCSLSSSNDTR-WNS 224 (371)
Q Consensus 169 ~~~~~~~~-~l~~~~~d-------------g~v~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~-l~~ 224 (371)
-.|+|++. .|.++... ..+.+.+..++ +....+..+. +++.++|+||++ |+.
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g----~~~rf~~~P~gaE~TG~~fspDg~tlfv 547 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG----EIRRFMVGPIGCEVTGISFSPDQKTLFV 547 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTC----CEEEEEECCTTCEEEEEEECTTSSEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCC----eEEEEEeCCCCccCcCeeECCCCCEEEE
Confidence 45677777 44444432 23445555555 4444555555 999999999986 443
Done!