Your job contains 1 sequence.
>041207
AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE
ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEA
EKEEKK
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 041207
(126 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2101283 - symbol:BBC1 "breast basic conserved ... 477 2.1e-45 1
TAIR|locus:2172863 - symbol:AT5G23900 species:3702 "Arabi... 464 5.0e-44 1
TAIR|locus:2101328 - symbol:AT3G48960 species:3702 "Arabi... 425 6.8e-40 1
ZFIN|ZDB-GENE-031007-1 - symbol:rpl13 "ribosomal protein ... 306 2.8e-27 1
RGD|2322065 - symbol:LOC100360491 "60S ribosomal protein ... 286 3.6e-25 1
RGD|621179 - symbol:Rpl13 "ribosomal protein L13" species... 286 3.6e-25 1
UNIPROTKB|P41125 - symbol:RPL13 "60S ribosomal protein L1... 284 5.9e-25 1
UNIPROTKB|E2R4F5 - symbol:RPL13 "Uncharacterized protein"... 284 5.9e-25 1
MGI|MGI:105922 - symbol:Rpl13 "ribosomal protein L13" spe... 284 5.9e-25 1
UNIPROTKB|P26373 - symbol:RPL13 "60S ribosomal protein L1... 283 7.6e-25 1
RGD|2320504 - symbol:LOC100361259 "60S ribosomal protein ... 281 1.2e-24 1
UNIPROTKB|F1MK30 - symbol:RPL13 "60S ribosomal protein L1... 279 2.0e-24 1
UNIPROTKB|Q56JZ1 - symbol:RPL13 "60S ribosomal protein L1... 279 2.0e-24 1
UNIPROTKB|I3LSD3 - symbol:RPL13 "60S ribosomal protein L1... 277 3.3e-24 1
FB|FBgn0011272 - symbol:RpL13 "Ribosomal protein L13" spe... 274 6.8e-24 1
RGD|1563145 - symbol:RGD1563145 "similar to 60S ribosomal... 245 8.0e-21 1
POMBASE|SPAC664.05 - symbol:rpl13 "60S ribosomal protein ... 232 1.9e-19 1
UNIPROTKB|F1LV25 - symbol:F1LV25 "Uncharacterized protein... 225 1.1e-18 1
UNIPROTKB|F1M2E9 - symbol:F1M2E9 "60S ribosomal protein L... 224 1.4e-18 1
WB|WBGene00004425 - symbol:rpl-13 species:6239 "Caenorhab... 222 2.2e-18 1
UNIPROTKB|F1LUH3 - symbol:F1LUH3 "Uncharacterized protein... 218 5.8e-18 1
ASPGD|ASPL0000067118 - symbol:AN7003 species:162425 "Emer... 199 6.0e-16 1
RGD|1563194 - symbol:RGD1563194 "similar to ribosomal pro... 197 9.8e-16 1
UNIPROTKB|A4R6R9 - symbol:MGG_13645 "60S ribosomal protei... 190 5.4e-15 1
DICTYBASE|DDB_G0291870 - symbol:rpl13 "S60 ribosomal prot... 182 3.8e-14 1
SGD|S000002240 - symbol:RPL13A "Ribosomal 60S subunit pro... 162 5.0e-12 1
CGD|CAL0006157 - symbol:RPL13 species:5476 "Candida albic... 160 8.2e-12 1
UNIPROTKB|O59931 - symbol:RPL13 "60S ribosomal protein L1... 160 8.2e-12 1
SGD|S000004750 - symbol:RPL13B "Ribosomal 60S subunit pro... 160 8.2e-12 1
UNIPROTKB|F1PYD2 - symbol:F1PYD2 "Uncharacterized protein... 153 4.5e-11 1
GENEDB_PFALCIPARUM|PF08_0075 - symbol:PF08_0075 "60S ribo... 147 2.0e-10 1
UNIPROTKB|Q8IAX6 - symbol:PF08_0075 "60S ribosomal protei... 147 2.0e-10 1
UNIPROTKB|J3QSB4 - symbol:RPL13 "60S ribosomal protein L1... 144 4.1e-10 1
UNIPROTKB|F1M2R8 - symbol:F1M2R8 "60S ribosomal protein L... 86 0.00095 1
>TAIR|locus:2101283 [details] [associations]
symbol:BBC1 "breast basic conserved 1" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005840
"ribosome" evidence=IEA;ISS;TAS] [GO:0006412 "translation"
evidence=IEA;ISS;TAS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0022626
"cytosolic ribosome" evidence=IDA] [GO:0005618 "cell wall"
evidence=IDA] [GO:0005774 "vacuolar membrane" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0016020 "membrane"
evidence=IDA] [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
GO:GO:0005886 GO:GO:0009506 GO:GO:0005774 GO:GO:0005618
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 EMBL:AL132967
GO:GO:0006412 GO:GO:0003735 GO:GO:0022625 EMBL:X75162 EMBL:AF428384
EMBL:AY050854 EMBL:AY065137 EMBL:AY079381 EMBL:AY081595
EMBL:AY084928 EMBL:Z34257 IPI:IPI00547367 PIR:S37271
RefSeq:NP_001030831.1 RefSeq:NP_190470.1 RefSeq:NP_850672.1
UniGene:At.22360 ProteinModelPortal:P41127 SMR:P41127 STRING:P41127
PaxDb:P41127 PRIDE:P41127 ProMEX:P41127 EnsemblPlants:AT3G49010.1
EnsemblPlants:AT3G49010.2 EnsemblPlants:AT3G49010.3 GeneID:824062
KEGG:ath:AT3G49010 GeneFarm:176 TAIR:At3g49010 eggNOG:COG4352
HOGENOM:HOG000170452 InParanoid:P41127 KO:K02873 OMA:LNPHFHK
PhylomeDB:P41127 ProtClustDB:CLSN2684222 Genevestigator:P41127
GermOnline:AT3G49010 PANTHER:PTHR11722 Uniprot:P41127
Length = 206
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 90/113 (79%), Positives = 103/113 (91%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
AAGIPKKLAPTIG++VDHRRKNRSLEGLQ+NVQRLKTYK KLV+FPRRARK KAGDS PE
Sbjct: 81 AAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPE 140
Query: 61 ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
ELA ATQVQG Y+PI E+PT+ELVK+T +MKSFKA+DK+R+ER N+RH GAR
Sbjct: 141 ELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAGAR 193
>TAIR|locus:2172863 [details] [associations]
symbol:AT5G23900 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] [GO:0022626 "cytosolic ribosome" evidence=IDA]
[GO:0016020 "membrane" evidence=IDA] [GO:0022625 "cytosolic large
ribosomal subunit" evidence=IDA] InterPro:IPR001380
InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0016020 GO:GO:0006412 EMBL:AB005244
GO:GO:0003735 GO:GO:0022625 eggNOG:COG4352 HOGENOM:HOG000170452
KO:K02873 ProtClustDB:CLSN2684222 PANTHER:PTHR11722 EMBL:AF378895
EMBL:AY052746 IPI:IPI00535397 RefSeq:NP_197778.1 UniGene:At.8750
ProteinModelPortal:Q9FF90 SMR:Q9FF90 STRING:Q9FF90 PaxDb:Q9FF90
PRIDE:Q9FF90 EnsemblPlants:AT5G23900.1 GeneID:832455
KEGG:ath:AT5G23900 TAIR:At5g23900 InParanoid:Q9FF90 OMA:PIRIVRC
PhylomeDB:Q9FF90 Genevestigator:Q9FF90 GermOnline:AT5G23900
Uniprot:Q9FF90
Length = 206
Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
Identities = 90/112 (80%), Positives = 100/112 (89%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
AGIPKKLAPTIG+SVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRR+R+ KAGDS PEE
Sbjct: 82 AGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEE 141
Query: 62 LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
LA ATQVQG YMPIA + +ELVK+T D+K+FKAYDK+R+ER N RH GAR
Sbjct: 142 LANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIRLERTNARHAGAR 193
>TAIR|locus:2101328 [details] [associations]
symbol:AT3G48960 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IDA] InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294
PROSITE:PS01104 EMBL:CP002686 GenomeReviews:BA000014_GR
EMBL:AL132967 GO:GO:0006412 GO:GO:0003735 GO:GO:0022625
eggNOG:COG4352 HOGENOM:HOG000170452 KO:K02873
ProtClustDB:CLSN2684222 PANTHER:PTHR11722 IPI:IPI00517323
PIR:T46134 RefSeq:NP_190465.1 UniGene:At.53843
ProteinModelPortal:Q9SMT4 SMR:Q9SMT4 STRING:Q9SMT4
EnsemblPlants:AT3G48960.1 GeneID:824057 KEGG:ath:AT3G48960
GeneFarm:186 TAIR:At3g48960 InParanoid:Q9SMT4 PhylomeDB:Q9SMT4
Genevestigator:Q9SMT4 GermOnline:AT3G48960 Uniprot:Q9SMT4
Length = 206
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 83/113 (73%), Positives = 94/113 (83%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
AAGIPKKLAPTIG+SVDH RKNRSLEG Q+NVQRLKTYKAKLV+FPR AR K GDSA +
Sbjct: 81 AAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQ 140
Query: 61 ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
ELA ATQVQ +MPI E PT+ELVK+T DMK F AYDK+R+E +N+RH G R
Sbjct: 141 ELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVR 193
>ZFIN|ZDB-GENE-031007-1 [details] [associations]
symbol:rpl13 "ribosomal protein L13" species:7955
"Danio rerio" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0051726 "regulation of cell cycle" evidence=IMP]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
ZFIN:ZDB-GENE-031007-1 GO:GO:0006412 GO:GO:0005840 GO:GO:0051726
GO:GO:0003735 eggNOG:COG4352 HOGENOM:HOG000170452 KO:K02873
OMA:LNPHFHK PANTHER:PTHR11722 GeneTree:ENSGT00390000007818 CTD:6137
HOVERGEN:HBG001156 OrthoDB:EOG4SJ5FX EMBL:AF385081 EMBL:AY561516
EMBL:BC075977 IPI:IPI00500626 RefSeq:NP_937786.1 UniGene:Dr.75569
STRING:Q90Z10 PRIDE:Q90Z10 Ensembl:ENSDART00000047391 GeneID:378961
KEGG:dre:378961 InParanoid:Q90Z10 NextBio:20813904
ArrayExpress:Q90Z10 Bgee:Q90Z10 Uniprot:Q90Z10
Length = 211
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 63/113 (55%), Positives = 79/113 (69%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
AAGI KK+A TIG+SVD RR+NRS E LQ+NVQRLK Y+ KL++FPR+A K K GDS E
Sbjct: 83 AAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAKPKKGDSTEE 142
Query: 61 ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
EL ATQ+ GP MPI + +++D K+FKA+ LR+ R N R FG R
Sbjct: 143 ELKMATQLTGPVMPIKKVHKKEKARVISEDEKNFKAFASLRMARANARLFGIR 195
>RGD|2322065 [details] [associations]
symbol:LOC100360491 "60S ribosomal protein L13-like"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
RGD:2322065 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR11722 GeneTree:ENSGT00390000007818 OMA:PKYARTI
OrthoDB:EOG4SJ5FX IPI:IPI00393399 RefSeq:XP_002725039.1
RefSeq:XP_002728169.1 PRIDE:D3ZRM9 Ensembl:ENSRNOT00000041303
GeneID:100360491 KEGG:rno:100360491 UCSC:RGD:2322065 Uniprot:D3ZRM9
Length = 211
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 59/112 (52%), Positives = 78/112 (69%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+ K GDS+ EE
Sbjct: 84 AGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEE 143
Query: 62 LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
L ATQ+ GP MPI + +T++ K+FKA+ LR+ R N R FG R
Sbjct: 144 LKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRMARANARLFGIR 195
>RGD|621179 [details] [associations]
symbol:Rpl13 "ribosomal protein L13" species:10116 "Rattus
norvegicus" [GO:0003735 "structural constituent of ribosome"
evidence=NAS] [GO:0006412 "translation" evidence=NAS] [GO:0015934
"large ribosomal subunit" evidence=NAS] [GO:0022625 "cytosolic
large ribosomal subunit" evidence=ISO;NAS] InterPro:IPR001380
InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104 RGD:621179
GO:GO:0006412 GO:GO:0003735 GO:GO:0022625 eggNOG:COG4352
HOGENOM:HOG000170452 KO:K02873 OMA:LNPHFHK PANTHER:PTHR11722
GeneTree:ENSGT00390000007818 CTD:6137 HOVERGEN:HBG001156
OrthoDB:EOG4SJ5FX EMBL:X78327 EMBL:BC058143 IPI:IPI00230916
PIR:JC2368 RefSeq:NP_112363.1 UniGene:Rn.156566 UniGene:Rn.908
IntAct:P41123 STRING:P41123 PRIDE:P41123 Ensembl:ENSRNOT00000020635
GeneID:81765 KEGG:rno:81765 UCSC:RGD:621179 InParanoid:P41123
NextBio:615562 Genevestigator:P41123 GermOnline:ENSRNOG00000015335
Uniprot:P41123
Length = 211
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 59/112 (52%), Positives = 78/112 (69%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+ K GDS+ EE
Sbjct: 84 AGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEE 143
Query: 62 LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
L ATQ+ GP MPI + +T++ K+FKA+ LR+ R N R FG R
Sbjct: 144 LKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRMARANARLFGIR 195
>UNIPROTKB|P41125 [details] [associations]
symbol:RPL13 "60S ribosomal protein L13" species:9031
"Gallus gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0022625
"cytosolic large ribosomal subunit" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
GO:GO:0006412 GO:GO:0003735 GO:GO:0022625 eggNOG:COG4352
HOGENOM:HOG000170452 KO:K02873 OMA:LNPHFHK PANTHER:PTHR11722
GeneTree:ENSGT00390000007818 CTD:6137 HOVERGEN:HBG001156
OrthoDB:EOG4SJ5FX EMBL:D26318 IPI:IPI00586858 RefSeq:NP_990330.1
UniGene:Gga.4040 STRING:P41125 PRIDE:P41125
Ensembl:ENSGALT00000009974 GeneID:395849 KEGG:gga:395849
InParanoid:P41125 NextBio:20815916 Uniprot:P41125
Length = 211
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 58/112 (51%), Positives = 78/112 (69%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
AGI K+ A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+ K GDS+PEE
Sbjct: 84 AGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSPEE 143
Query: 62 LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
L ATQ+ GP MPI + ++++ K+FKA+ LR+ R N R FG R
Sbjct: 144 LKMATQLSGPVMPIRNVFKREKARVISEEEKNFKAFASLRMARANARLFGIR 195
>UNIPROTKB|E2R4F5 [details] [associations]
symbol:RPL13 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
GO:GO:0006412 GO:GO:0003735 GO:GO:0022625 KO:K02873 OMA:LNPHFHK
PANTHER:PTHR11722 GeneTree:ENSGT00390000007818 CTD:6137
EMBL:AAEX03003953 RefSeq:XP_003434731.1 RefSeq:XP_536749.1
Ensembl:ENSCAFT00000031560 GeneID:479612 KEGG:cfa:479612
NextBio:20854772 Uniprot:E2R4F5
Length = 211
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 59/112 (52%), Positives = 78/112 (69%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+ K GDS+ EE
Sbjct: 84 AGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEE 143
Query: 62 LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
L ATQ+ GP MPI + +T++ K+FKA+ LR+ R N R FG R
Sbjct: 144 LKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195
>MGI|MGI:105922 [details] [associations]
symbol:Rpl13 "ribosomal protein L13" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0022625 "cytosolic
large ribosomal subunit" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR001380
InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104 MGI:MGI:105922
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 eggNOG:COG4352
HOGENOM:HOG000170452 KO:K02873 OMA:LNPHFHK PANTHER:PTHR11722
GeneTree:ENSGT00390000007818 CTD:6137 HOVERGEN:HBG001156
OrthoDB:EOG4SJ5FX EMBL:U28917 EMBL:AK002787 EMBL:AK010989
EMBL:BC055358 IPI:IPI00224505 RefSeq:NP_058018.2 UniGene:Mm.319719
UniGene:Mm.391834 ProteinModelPortal:P47963 SMR:P47963
IntAct:P47963 STRING:P47963 PhosphoSite:P47963 PaxDb:P47963
PRIDE:P47963 Ensembl:ENSMUST00000000756 GeneID:270106
KEGG:mmu:270106 UCSC:uc009nue.2 InParanoid:P47963 NextBio:446939
Bgee:P47963 CleanEx:MM_RPL13 Genevestigator:P47963
GermOnline:ENSMUSG00000000740 GermOnline:ENSMUSG00000066315
Uniprot:P47963
Length = 211
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 59/112 (52%), Positives = 78/112 (69%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+ K GDS+ EE
Sbjct: 84 AGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEE 143
Query: 62 LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
L ATQ+ GP MPI + +T++ K+FKA+ LR+ R N R FG R
Sbjct: 144 LKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195
>UNIPROTKB|P26373 [details] [associations]
symbol:RPL13 "60S ribosomal protein L13" species:9606 "Homo
sapiens" [GO:0006412 "translation" evidence=NAS;TAS] [GO:0003735
"structural constituent of ribosome" evidence=NAS] [GO:0022625
"cytosolic large ribosomal subunit" evidence=IDA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0022626 "cytosolic ribosome"
evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006413 "translational initiation"
evidence=TAS] [GO:0006414 "translational elongation" evidence=TAS]
[GO:0006415 "translational termination" evidence=TAS] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019058 "viral infectious cycle"
evidence=TAS] [GO:0019083 "viral transcription" evidence=TAS]
[GO:0044267 "cellular protein metabolic process" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
Reactome:REACT_21257 Reactome:REACT_17015 InterPro:IPR001380
InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
Reactome:REACT_116125 GO:GO:0000184 GO:GO:0006413 GO:GO:0003723
GO:GO:0003735 GO:GO:0006415 GO:GO:0006414 Reactome:REACT_1762
GO:GO:0006614 GO:GO:0022625 GO:GO:0019083 eggNOG:COG4352
HOGENOM:HOG000170452 KO:K02873 OMA:LNPHFHK PANTHER:PTHR11722
CTD:6137 HOVERGEN:HBG001156 OrthoDB:EOG4SJ5FX ChiTaRS:RPL13
EMBL:X64707 EMBL:AB062392 EMBL:AK297198 EMBL:AC092123 EMBL:BC004954
EMBL:BC007345 EMBL:BC007563 EMBL:BC007805 EMBL:BC010994
EMBL:BC013078 EMBL:BC014167 EMBL:BC020804 EMBL:BC027463
EMBL:BC063378 EMBL:BC093063 EMBL:BC106058 IPI:IPI00465361
IPI:IPI00978971 PIR:S23753 RefSeq:NP_000968.2 RefSeq:NP_001230059.1
RefSeq:NP_001230060.1 RefSeq:NP_150254.1 UniGene:Hs.410817
ProteinModelPortal:P26373 SMR:P26373 IntAct:P26373
MINT:MINT-1148895 STRING:P26373 PhosphoSite:P26373 DMDM:21903462
PaxDb:P26373 PeptideAtlas:P26373 PRIDE:P26373 DNASU:6137
Ensembl:ENST00000311528 Ensembl:ENST00000393099
Ensembl:ENST00000452368 Ensembl:ENST00000567815 GeneID:6137
KEGG:hsa:6137 UCSC:uc002fnm.2 GeneCards:GC16P089637 HGNC:HGNC:10303
HPA:HPA051702 MIM:113703 neXtProt:NX_P26373 PharmGKB:PA34670
InParanoid:P26373 PhylomeDB:P26373 GenomeRNAi:6137 NextBio:23839
PMAP-CutDB:P26373 ArrayExpress:P26373 Bgee:P26373 CleanEx:HS_RPL13
Genevestigator:P26373 GermOnline:ENSG00000167526 Uniprot:P26373
Length = 211
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 58/112 (51%), Positives = 78/112 (69%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+ K GDS+ EE
Sbjct: 84 AGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEE 143
Query: 62 LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
L ATQ+ GP MP+ + +T++ K+FKA+ LR+ R N R FG R
Sbjct: 144 LKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195
>RGD|2320504 [details] [associations]
symbol:LOC100361259 "60S ribosomal protein L13-like"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
RGD:2320504 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 KO:K02873
PANTHER:PTHR11722 OrthoDB:EOG4SJ5FX IPI:IPI00476506
RefSeq:XP_002725036.1 RefSeq:XP_002728163.1 PRIDE:D4A075
Ensembl:ENSRNOT00000046777 GeneID:100361259 KEGG:rno:100361259
OMA:QFMPIVR Uniprot:D4A075
Length = 210
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 59/112 (52%), Positives = 77/112 (68%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y +KL++FPR+ K GDS+ EE
Sbjct: 83 AGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYCSKLILFPRKPSAPKKGDSSAEE 142
Query: 62 LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
L ATQ+ GP MPI + +T++ K+FKA+ LR+ R N R FG R
Sbjct: 143 LKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRMARANARLFGIR 194
>UNIPROTKB|F1MK30 [details] [associations]
symbol:RPL13 "60S ribosomal protein L13" species:9913 "Bos
taurus" [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
GO:GO:0006412 GO:GO:0003735 GO:GO:0022625 PANTHER:PTHR11722
GeneTree:ENSGT00390000007818 OMA:PKYARTI IPI:IPI00705739
EMBL:DAAA02046269 Ensembl:ENSBTAT00000047320 Uniprot:F1MK30
Length = 293
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 58/112 (51%), Positives = 77/112 (68%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
AGI KK+A TIG+SVD RR+N+ E LQ+NVQRLK Y++KL++FPR+ K GDS+ EE
Sbjct: 84 AGIHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEE 143
Query: 62 LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
L ATQ+ GP MPI + +T++ K+FKA+ LR+ R N R FG R
Sbjct: 144 LKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195
>UNIPROTKB|Q56JZ1 [details] [associations]
symbol:RPL13 "60S ribosomal protein L13" species:9913 "Bos
taurus" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR001380 InterPro:IPR018256
Pfam:PF01294 PROSITE:PS01104 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 eggNOG:COG4352 KO:K02873 PANTHER:PTHR11722
EMBL:AY911336 IPI:IPI00705739 RefSeq:NP_001015543.1
UniGene:Bt.22248 STRING:Q56JZ1 PRIDE:Q56JZ1 GeneID:508221
KEGG:bta:508221 CTD:6137 HOVERGEN:HBG001156 InParanoid:Q56JZ1
OrthoDB:EOG4SJ5FX NextBio:20868415 Uniprot:Q56JZ1
Length = 211
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 58/112 (51%), Positives = 77/112 (68%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
AGI KK+A TIG+SVD RR+N+ E LQ+NVQRLK Y++KL++FPR+ K GDS+ EE
Sbjct: 84 AGIHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEE 143
Query: 62 LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
L ATQ+ GP MPI + +T++ K+FKA+ LR+ R N R FG R
Sbjct: 144 LKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195
>UNIPROTKB|I3LSD3 [details] [associations]
symbol:RPL13 "60S ribosomal protein L13" species:9823 "Sus
scrofa" [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
GO:GO:0006412 GO:GO:0003735 GO:GO:0022625 KO:K02873 OMA:LNPHFHK
PANTHER:PTHR11722 GeneTree:ENSGT00390000007818 CTD:6137
EMBL:FP325274 RefSeq:NP_001230274.1 UniGene:Ssc.769
Ensembl:ENSSSCT00000028682 GeneID:100628232 KEGG:ssc:100628232
Uniprot:I3LSD3
Length = 211
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 58/112 (51%), Positives = 76/112 (67%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
AGI KK+A TIG+SVD RR+N+ E LQ+NVQRLK Y++KL++FPR+ K GDS+ EE
Sbjct: 84 AGIHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEE 143
Query: 62 LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
L ATQ+ GP MPI + +T + K+FKA+ LR+ R N R FG R
Sbjct: 144 LKLATQLTGPVMPIRNVYKREKARVITDEEKNFKAFASLRMARANARLFGIR 195
>FB|FBgn0011272 [details] [associations]
symbol:RpL13 "Ribosomal protein L13" species:7227 "Drosophila
melanogaster" [GO:0003735 "structural constituent of ribosome"
evidence=ISS;IDA;NAS] [GO:0022625 "cytosolic large ribosomal
subunit" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0005840 "ribosome" evidence=IDA;NAS] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0000022 "mitotic spindle elongation"
evidence=IMP] [GO:0051298 "centrosome duplication" evidence=IMP]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
EMBL:AE014134 GO:GO:0051298 GO:GO:0005811 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0000022 eggNOG:COG4352 KO:K02873
OMA:LNPHFHK PANTHER:PTHR11722 GeneTree:ENSGT00390000007818 CTD:6137
EMBL:X77926 EMBL:BT053725 EMBL:BT128812 PIR:JC4260 PIR:S42877
RefSeq:NP_001033891.1 RefSeq:NP_523530.1 UniGene:Dm.21541
ProteinModelPortal:P41126 SMR:P41126 DIP:DIP-19420N IntAct:P41126
MINT:MINT-752357 STRING:P41126 PaxDb:P41126 PRIDE:P41126
EnsemblMetazoa:FBtr0079888 EnsemblMetazoa:FBtr0100164
EnsemblMetazoa:FBtr0310482 GeneID:34329 KEGG:dme:Dmel_CG4651
FlyBase:FBgn0011272 InParanoid:P41126 OrthoDB:EOG45HQDF
PhylomeDB:P41126 ChiTaRS:RPL13 GenomeRNAi:34329 NextBio:787975
Bgee:P41126 GermOnline:CG4651 Uniprot:P41126
Length = 218
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 57/113 (50%), Positives = 77/113 (68%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
AGI A TIG++VD RRKN+SLE Q N+QRLK Y++KL++FP +K +AG+S+ EE
Sbjct: 83 AGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILFPINEKKIRAGESSLEE 142
Query: 62 LATATQVQGPYMPIAPERPTV-ELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
ATQ++GP +PI E+P V E +VT+D K FKA+ LR R + R G R
Sbjct: 143 CKLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATLRKARTDARLVGIR 195
>RGD|1563145 [details] [associations]
symbol:RGD1563145 "similar to 60S ribosomal protein L13"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
RGD:1563145 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR11722 GeneTree:ENSGT00390000007818 OrthoDB:EOG4SJ5FX
IPI:IPI00390829 RefSeq:XP_001068099.1 RefSeq:XP_575281.1
PRIDE:D3ZD02 Ensembl:ENSRNOT00000051343 GeneID:499937
KEGG:rno:499937 UCSC:RGD:1563145 CTD:499937 OMA:KACRIAP
NextBio:704484 Uniprot:D3ZD02
Length = 210
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 55/112 (49%), Positives = 73/112 (65%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
AGI KK+A TIG+SVD RR N+S E LQ+NVQRLK +++KL++FPR+ K G S+ EE
Sbjct: 84 AGIHKKMAHTIGISVDPRR-NKSTESLQANVQRLKEFRSKLILFPRKPSAPKKGGSSAEE 142
Query: 62 LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
L ATQ+ GP MPI + +T++ K+FKA LR+ R FG R
Sbjct: 143 LKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKASASLRMTRAKAWLFGIR 194
>POMBASE|SPAC664.05 [details] [associations]
symbol:rpl13 "60S ribosomal protein L13 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0002181 "cytoplasmic
translation" evidence=NAS] [GO:0003735 "structural constituent of
ribosome" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006412 "translation" evidence=ISO] [GO:0022625 "cytosolic
large ribosomal subunit" evidence=ISO] InterPro:IPR001380
InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104 PomBase:SPAC664.05
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003735 GO:GO:0002181
GO:GO:0022625 HOGENOM:HOG000170452 KO:K02873 PANTHER:PTHR11722
OrthoDB:EOG415KPR EMBL:AB016216 PIR:T43385 RefSeq:NP_593453.1
IntAct:O74175 STRING:O74175 EnsemblFungi:SPAC664.05.1
GeneID:2543553 KEGG:spo:SPAC664.05 OMA:QPARKER NextBio:20804562
Uniprot:O74175
Length = 208
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 53/114 (46%), Positives = 72/114 (63%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
AAG+ +++A TIG+ VDHRR+NRS E LQ NV+R+K Y A L+VFPR+A + K GD+
Sbjct: 82 AAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDV 141
Query: 61 ELATATQVQGPYMPIAPERPTVELVK-VTQDMKSFKAYDKLRIERVNERHFGAR 113
A T V +PI E VE K +T++ K+F A+ L ER R+ GAR
Sbjct: 142 SGAEQTDVAA-VLPITQE--AVEEAKPITEEAKNFNAFSTLSNERAYARYAGAR 192
>UNIPROTKB|F1LV25 [details] [associations]
symbol:F1LV25 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR001380
Pfam:PF01294 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR11722 IPI:IPI00947892 Ensembl:ENSRNOT00000018474
Uniprot:F1LV25
Length = 203
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 48/106 (45%), Positives = 71/106 (66%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLK-TYKAKLVVFPRRARKFKAGDSAPE 60
AG +K+A TIG+S+D RR+N++ E LQ+NVQRLK +Y++KL++FPR+ K GDS+ E
Sbjct: 80 AGTHQKMAHTIGISIDPRRRNKATESLQANVQRLKGSYRSKLLLFPRKPSAPKKGDSSAE 139
Query: 61 ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVN 106
EL ATQ+ GP MPI + T++ K+ K++ LR+ N
Sbjct: 140 ELKLATQLTGPVMPIRNVYKKEKARASTEEEKNLKSFASLRMAHDN 185
>UNIPROTKB|F1M2E9 [details] [associations]
symbol:F1M2E9 "60S ribosomal protein L13" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR001380
InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR11722
GeneTree:ENSGT00390000007818 IPI:IPI00950963
Ensembl:ENSRNOT00000064713 Uniprot:F1M2E9
Length = 165
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 44/74 (59%), Positives = 57/74 (77%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
AGI KK+A TIG+SVD RR+N+S E LQ+N+QRL Y++KL++FPR+ K GDS+ EE
Sbjct: 61 AGIHKKMARTIGISVDPRRRNKSTESLQANMQRLNEYRSKLILFPRKPSAPKKGDSSAEE 120
Query: 62 LATATQVQGPYMPI 75
L ATQ+ GP MPI
Sbjct: 121 LKLATQLTGPVMPI 134
>WB|WBGene00004425 [details] [associations]
symbol:rpl-13 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0006915 "apoptotic process" evidence=IMP] InterPro:IPR001380
InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104 GO:GO:0009792
GO:GO:0040007 GO:GO:0006915 GO:GO:0002119 GO:GO:0006412
GO:GO:0000003 GO:GO:0005840 GO:GO:0003735 EMBL:FO080749
eggNOG:COG4352 HOGENOM:HOG000170452 KO:K02873 OMA:LNPHFHK
PANTHER:PTHR11722 GeneTree:ENSGT00390000007818 PIR:T25599
RefSeq:NP_001021017.1 RefSeq:NP_001021018.1
ProteinModelPortal:P91128 SMR:P91128 DIP:DIP-25306N
MINT:MINT-1074454 STRING:P91128 PaxDb:P91128 PRIDE:P91128
EnsemblMetazoa:C32E8.2a.1 EnsemblMetazoa:C32E8.2a.2 GeneID:171949
KEGG:cel:CELE_C32E8.2 UCSC:C32E8.2a.1 CTD:171949 WormBase:C32E8.2a
WormBase:C32E8.2b InParanoid:P91128 NextBio:873371 Uniprot:P91128
Length = 207
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 48/113 (42%), Positives = 73/113 (64%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
AAGI + A TIG++VD RR N++ EGL++N RLK YKAKL++FP++A K GDS+ E
Sbjct: 83 AAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAE 142
Query: 61 ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
EL A Q++G +P++ E +VT + + + LR ER ++++ G R
Sbjct: 143 ELKVAAQLRGDVLPLSHTITFDEPRQVTDAERKVEIFRLLRKERADKKYRGKR 195
>UNIPROTKB|F1LUH3 [details] [associations]
symbol:F1LUH3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR001380
Pfam:PF01294 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR11722 IPI:IPI00389956 Ensembl:ENSRNOT00000039574
OMA:CANARLF Uniprot:F1LUH3
Length = 199
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 48/110 (43%), Positives = 69/110 (62%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
AGI KK+A TIG+SVD RR+N+S+E LQ+NVQ LK Y KL+++P++ + G+S EE
Sbjct: 74 AGIHKKMARTIGISVDPRRRNKSIESLQANVQGLKEYCPKLILYPKKPSAPQKGESCAEE 133
Query: 62 LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 111
A Q+ GP MP + L+ T++ K+FK + L + N R FG
Sbjct: 134 FKLANQLTGPVMPFRMYKEKARLI--TEE-KNFKDFVSLHMVCANARLFG 180
>ASPGD|ASPL0000067118 [details] [associations]
symbol:AN7003 species:162425 "Emericella nidulans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:BN001304
EMBL:AACD01000117 eggNOG:COG4352 HOGENOM:HOG000170452 KO:K02873
OMA:LNPHFHK PANTHER:PTHR11722 OrthoDB:EOG415KPR RefSeq:XP_664607.1
STRING:Q5AXH7 EnsemblFungi:CADANIAT00000473 GeneID:2869986
KEGG:ani:AN7003.2 Uniprot:Q5AXH7
Length = 226
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 57/129 (44%), Positives = 73/129 (56%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
AGIPKKLA TIG++VDHRR N S E L +NV RLK YKA+L++FPR++ +FK DS EE
Sbjct: 83 AGIPKKLARTIGIAVDHRRTNYSKESLVANVARLKDYKARLIIFPRKSGQFKKTDSTAEE 142
Query: 62 LATAT-------QVQGPYMP----IAPERPTVELVKVTQ----DMKSFK--AYDKLRIER 104
+ A Q QG Y I P + T VT+ D+ + AY +LR R
Sbjct: 143 VNAAKAAFAAEGQTQG-YATNVGAILPIKNTTAEEAVTEVKRDDLPKGEEAAYRRLREAR 201
Query: 105 VNERHFGAR 113
R+ G R
Sbjct: 202 SEARYKGIR 210
>RGD|1563194 [details] [associations]
symbol:RGD1563194 "similar to ribosomal protein L13"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR001380 Pfam:PF01294 RGD:1563194 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR11722 OrthoDB:EOG4SJ5FX
IPI:IPI00360566 Ensembl:ENSRNOT00000032427 Uniprot:D3ZFF0
Length = 223
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 49/113 (43%), Positives = 66/113 (58%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKT-YKAKLVVFPRRARKFKAGDSAPE 60
AG+ K +A TI + VD RR+N S + LQ+ VQ LK Y++KL+ FPR+ K GD + E
Sbjct: 83 AGVNKNMARTICICVDPRRQNTSTKSLQAKVQHLKEGYRSKLIRFPRKPSAPKKGDRSAE 142
Query: 61 ELATATQVQGPYMPIAPERPTVELVKVTQD--MKSFKAYDKLRIERVNERHFG 111
E A Q+ GP MPI R + VK ++FKA+ LR+ R N R FG
Sbjct: 143 EFKLAIQLTGPVMPI---RNVYKKVKGRSHHRRRTFKAFASLRMARANARLFG 192
>UNIPROTKB|A4R6R9 [details] [associations]
symbol:MGG_13645 "60S ribosomal protein L13" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0043581 "mycelium development" evidence=IEP] InterPro:IPR001380
InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0043581 EMBL:CM001234 KO:K02873
PANTHER:PTHR11722 OrthoDB:EOG415KPR RefSeq:XP_003717580.1
EnsemblFungi:MGG_13645T0 GeneID:2680716 KEGG:mgr:MGG_13645
Uniprot:A4R6R9
Length = 202
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 47/113 (41%), Positives = 61/113 (53%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
AAG+ K A TIG+SVD RR+N S E L NV+RLK YKAKLVV P++ +K + D
Sbjct: 82 AAGLHKLQARTIGISVDGRRRNLSEESLARNVERLKAYKAKLVVMPKKGKKPEVADKTAH 141
Query: 61 ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
+++ +PI P E+ K AY +LR R N RH G R
Sbjct: 142 KISAV-------VPIVPPVGVTEISKSDIPKSDKSAYRQLREARANARHEGKR 187
>DICTYBASE|DDB_G0291870 [details] [associations]
symbol:rpl13 "S60 ribosomal protein L13"
species:44689 "Dictyostelium discoideum" [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003735 "structural constituent
of ribosome" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
dictyBase:DDB_G0291870 GenomeReviews:CM000155_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AAFI02000186 eggNOG:COG4352
KO:K02873 OMA:LNPHFHK PANTHER:PTHR11722 RefSeq:XP_629876.1
STRING:Q54E20 PRIDE:Q54E20 EnsemblProtists:DDB0229951
GeneID:8628374 KEGG:ddi:DDB_G0291870 ProtClustDB:PTZ00352
Uniprot:Q54E20
Length = 209
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 44/115 (38%), Positives = 63/115 (54%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
AAG+ + A TIG++VD RR N++ + L N QRLK Y++KLV+FPR+ K G++ E
Sbjct: 81 AAGLTAQYARTIGIAVDTRRVNKTQQSLTLNTQRLKNYQSKLVLFPRKVNAPKKGEATKE 140
Query: 61 ELATATQVQGPYMPIAPERPTVELV--KVTQDMKSFKAYDKLRIERVNERHFGAR 113
E+A A Q P+ + T E K T+ K F AY L+ + G R
Sbjct: 141 EVAKAVQTLKPFTVKSAIAVTCEQTPRKPTEAEKKFSAYATLKAADSKAKTVGIR 195
>SGD|S000002240 [details] [associations]
symbol:RPL13A "Ribosomal 60S subunit protein L13A"
species:4932 "Saccharomyces cerevisiae" [GO:0006412 "translation"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA;TAS] [GO:0002181 "cytoplasmic translation"
evidence=TAS] [GO:0022625 "cytosolic large ribosomal subunit"
evidence=TAS] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
SGD:S000002240 EMBL:BK006938 GO:GO:0003735 GO:GO:0002181 PDB:4B6A
PDBsum:4B6A GO:GO:0022625 PDB:3U5E PDB:3U5I PDBsum:3U5E PDBsum:3U5I
eggNOG:COG4352 HOGENOM:HOG000170452 KO:K02873 PANTHER:PTHR11722
EMBL:Z74130 PIR:S67618 RefSeq:NP_010201.1 ProteinModelPortal:Q12690
SMR:Q12690 IntAct:Q12690 MINT:MINT-2981666 STRING:Q12690
PaxDb:Q12690 PeptideAtlas:Q12690 EnsemblFungi:YDL082W GeneID:851477
KEGG:sce:YDL082W CYGD:YDL082w GeneTree:ENSGT00390000007818
OMA:PKYARTI OrthoDB:EOG415KPR NextBio:968783 Genevestigator:Q12690
GermOnline:YDL082W Uniprot:Q12690
Length = 199
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 45/113 (39%), Positives = 62/113 (54%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
AAG+ A TIG++VDHRR+NR+ E +NVQRLK Y++K++VFPR KA ++
Sbjct: 82 AAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRNG---KAPEAEQV 138
Query: 61 ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
A AT PIA VE + QD A+ LR+ R ++ G R
Sbjct: 139 LSAAAT------FPIAQPATDVE-ARAVQD-NGESAFRTLRLARSEKKFRGIR 183
>CGD|CAL0006157 [details] [associations]
symbol:RPL13 species:5476 "Candida albicans" [GO:0009986
"cell surface" evidence=IDA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
CGD:CAL0006157 EMBL:AACQ01000017 EMBL:AACQ01000015 GO:GO:0009986
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:AL033497
eggNOG:COG4352 KO:K02873 PANTHER:PTHR11722 EMBL:AF050672
EMBL:U80854 PIR:T52146 RefSeq:XP_721220.1 RefSeq:XP_721492.1
STRING:O59931 GeneID:3636841 GeneID:3637128 KEGG:cal:CaO19.10511
KEGG:cal:CaO19.2994 Uniprot:O59931
Length = 202
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 41/113 (36%), Positives = 63/113 (55%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
A GI K A TIG+SVDHRR+N+S E +NV RL+ YK+KLV+F ++ + +
Sbjct: 82 AVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIFDKKTKASEVASFEQV 141
Query: 61 ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
+++ V+ P APE + V+V + AY LR+ R +++ G R
Sbjct: 142 DVSATFPVEQP----APESG-LRAVEVPEQT----AYRTLRLARNEKKYKGIR 185
>UNIPROTKB|O59931 [details] [associations]
symbol:RPL13 "60S ribosomal protein L13" species:237561
"Candida albicans SC5314" [GO:0009986 "cell surface" evidence=IDA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
CGD:CAL0006157 EMBL:AACQ01000017 EMBL:AACQ01000015 GO:GO:0009986
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:AL033497
eggNOG:COG4352 KO:K02873 PANTHER:PTHR11722 EMBL:AF050672
EMBL:U80854 PIR:T52146 RefSeq:XP_721220.1 RefSeq:XP_721492.1
STRING:O59931 GeneID:3636841 GeneID:3637128 KEGG:cal:CaO19.10511
KEGG:cal:CaO19.2994 Uniprot:O59931
Length = 202
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 41/113 (36%), Positives = 63/113 (55%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
A GI K A TIG+SVDHRR+N+S E +NV RL+ YK+KLV+F ++ + +
Sbjct: 82 AVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIFDKKTKASEVASFEQV 141
Query: 61 ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
+++ V+ P APE + V+V + AY LR+ R +++ G R
Sbjct: 142 DVSATFPVEQP----APESG-LRAVEVPEQT----AYRTLRLARNEKKYKGIR 185
>SGD|S000004750 [details] [associations]
symbol:RPL13B "Ribosomal 60S subunit protein L13B"
species:4932 "Saccharomyces cerevisiae" [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003735 "structural constituent
of ribosome" evidence=IEA;TAS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0002181 "cytoplasmic translation" evidence=TAS]
[GO:0022625 "cytosolic large ribosomal subunit" evidence=TAS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
SGD:S000004750 EMBL:BK006946 GO:GO:0003735 GO:GO:0002181
EMBL:Z47071 GO:GO:0022625 HOGENOM:HOG000170452 KO:K02873
OMA:LNPHFHK PANTHER:PTHR11722 GeneTree:ENSGT00390000007818
OrthoDB:EOG415KPR PIR:S50398 RefSeq:NP_013862.1
ProteinModelPortal:P40212 SMR:P40212 DIP:DIP-2591N IntAct:P40212
MINT:MINT-425636 STRING:P40212 PeptideAtlas:P40212
EnsemblFungi:YMR142C GeneID:855173 KEGG:sce:YMR142C CYGD:YMR142c
NextBio:978614 Genevestigator:P40212 GermOnline:YMR142C
Uniprot:P40212
Length = 199
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 45/113 (39%), Positives = 62/113 (54%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
AAG+ A TIG++VDHRR+NR+ E +NVQRLK Y++K++VFPR KA ++
Sbjct: 82 AAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRDG---KAPEAEQV 138
Query: 61 ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
A AT PIA VE + QD A+ LR+ R ++ G R
Sbjct: 139 LSAAAT------FPIAQPATDVE-ARAVQD-NGESAFRTLRLARSEKKFRGIR 183
>UNIPROTKB|F1PYD2 [details] [associations]
symbol:F1PYD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR001380
Pfam:PF01294 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR11722 GeneTree:ENSGT00390000007818 EMBL:AAEX03009117
Ensembl:ENSCAFT00000003742 OMA:CLAANIN Uniprot:F1PYD2
Length = 178
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 41/112 (36%), Positives = 64/112 (57%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
AGI KK+A IG+SVD RR+N+S E L+++++ LK Y + ++ P + + GD + EE
Sbjct: 61 AGIYKKVAWIIGISVDPRRQNKSTESLEADLEGLKKYLYRFIL-PLKPLAPEKGDISAEE 119
Query: 62 LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
L ATQ+ MPI E V++ +SF+ + L + N + FG R
Sbjct: 120 LKLATQLAEQVMPIQNVYKK-ERVRIIPG-ESFQGFASLCMAHTNTQPFGIR 169
>GENEDB_PFALCIPARUM|PF08_0075 [details] [associations]
symbol:PF08_0075 "60S ribosomal protein L13,
putative" species:5833 "Plasmodium falciparum" [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISS]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
GO:GO:0006412 GO:GO:0003735 GO:GO:0022625 EMBL:AL844507
HOGENOM:HOG000170452 KO:K02873 PANTHER:PTHR11722
ProtClustDB:PTZ00352 RefSeq:XP_001349385.1
ProteinModelPortal:Q8IAX6 IntAct:Q8IAX6 MINT:MINT-1660232
PRIDE:Q8IAX6 EnsemblProtists:PF08_0075:mRNA GeneID:2655274
KEGG:pfa:PF08_0075 EuPathDB:PlasmoDB:PF3D7_0814000 OMA:SIAANIQ
Uniprot:Q8IAX6
Length = 215
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 43/121 (35%), Positives = 61/121 (50%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDS---A 58
AG+ + A TIG+ D RRKNRS E L NV+RL YK LV+ P + K K G A
Sbjct: 82 AGLTPRAAQTIGICYDKRRKNRSEESLTKNVERLLKYKNSLVMIPLKKNKAKKGIGGIPA 141
Query: 59 PEELATATQVQG--PYMPIAPE----RPTVELVKVTQDMKSFKAYDKLRIERVNERHFGA 112
+ T + + P + I + +P E ++V++ K F AY LR ++ ER
Sbjct: 142 DADKNTIKEFRNKKPLLSIFKKEKNTKPFYETIEVSKIDKEFLAYKTLRRAKLAERRKNR 201
Query: 113 R 113
R
Sbjct: 202 R 202
>UNIPROTKB|Q8IAX6 [details] [associations]
symbol:PF08_0075 "60S ribosomal protein L13" species:36329
"Plasmodium falciparum 3D7" [GO:0022625 "cytosolic large ribosomal
subunit" evidence=ISS] InterPro:IPR001380 InterPro:IPR018256
Pfam:PF01294 PROSITE:PS01104 GO:GO:0006412 GO:GO:0003735
GO:GO:0022625 EMBL:AL844507 HOGENOM:HOG000170452 KO:K02873
PANTHER:PTHR11722 ProtClustDB:PTZ00352 RefSeq:XP_001349385.1
ProteinModelPortal:Q8IAX6 IntAct:Q8IAX6 MINT:MINT-1660232
PRIDE:Q8IAX6 EnsemblProtists:PF08_0075:mRNA GeneID:2655274
KEGG:pfa:PF08_0075 EuPathDB:PlasmoDB:PF3D7_0814000 OMA:SIAANIQ
Uniprot:Q8IAX6
Length = 215
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 43/121 (35%), Positives = 61/121 (50%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDS---A 58
AG+ + A TIG+ D RRKNRS E L NV+RL YK LV+ P + K K G A
Sbjct: 82 AGLTPRAAQTIGICYDKRRKNRSEESLTKNVERLLKYKNSLVMIPLKKNKAKKGIGGIPA 141
Query: 59 PEELATATQVQG--PYMPIAPE----RPTVELVKVTQDMKSFKAYDKLRIERVNERHFGA 112
+ T + + P + I + +P E ++V++ K F AY LR ++ ER
Sbjct: 142 DADKNTIKEFRNKKPLLSIFKKEKNTKPFYETIEVSKIDKEFLAYKTLRRAKLAERRKNR 201
Query: 113 R 113
R
Sbjct: 202 R 202
>UNIPROTKB|J3QSB4 [details] [associations]
symbol:RPL13 "60S ribosomal protein L13" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] InterPro:IPR001380 InterPro:IPR018256
Pfam:PF01294 PROSITE:PS01104 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 PANTHER:PTHR11722 ChiTaRS:RPL13 EMBL:AC092123
HGNC:HGNC:10303 Ensembl:ENST00000467736 Uniprot:J3QSB4
Length = 126
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 28/43 (65%), Positives = 37/43 (86%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVV 44
AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++
Sbjct: 84 AGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLIL 126
>UNIPROTKB|F1M2R8 [details] [associations]
symbol:F1M2R8 "60S ribosomal protein L13" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0051082
"unfolded protein binding" evidence=IEA] InterPro:IPR001380
InterPro:IPR001404 InterPro:IPR018256 Pfam:PF00183 Pfam:PF01294
PROSITE:PS01104 GO:GO:0005524 GO:GO:0006457 GO:GO:0006950
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR11722
GeneTree:ENSGT00390000007818 EMBL:AC110387 EMBL:AC114461
IPI:IPI00359824 Ensembl:ENSRNOT00000055035 Uniprot:F1M2R8
Length = 173
Score = 86 (35.3 bits), Expect = 0.00095, P = 0.00095
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARK 51
AGI KK+A TI +SVD ++K + E + +R+ K +++P+R ++
Sbjct: 42 AGIHKKMARTIDISVDPKKKKKKKERKKEKNERVTETNQKDIIYPKREKE 91
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.132 0.369 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 126 114 0.00091 102 3 11 22 0.46 30
29 0.44 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 34
No. of states in DFA: 488 (52 KB)
Total size of DFA: 95 KB (2070 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 13.75u 0.10s 13.85t Elapsed: 00:00:00
Total cpu time: 13.75u 0.10s 13.85t Elapsed: 00:00:00
Start: Fri May 10 02:38:34 2013 End: Fri May 10 02:38:34 2013