BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041207
(126 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P41129|RL132_BRANA 60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1
Length = 206
Score = 202 bits (515), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 99/126 (78%), Positives = 111/126 (88%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
AAGIPKKLAPTIG+S+DHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS E
Sbjct: 81 AAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAE 140
Query: 61 ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEA 120
ELA ATQVQG YMPI E+ +ELVK+T +MKS AYDK+R+ER N+RH GAR K+AA+A
Sbjct: 141 ELANATQVQGDYMPIVREKQAMELVKLTSEMKSVNAYDKIRLERTNKRHAGARAKRAADA 200
Query: 121 EKEEKK 126
EKEEKK
Sbjct: 201 EKEEKK 206
>sp|P41128|RL131_BRANA 60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1
Length = 206
Score = 201 bits (510), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 98/126 (77%), Positives = 111/126 (88%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
+AGIPKKLAPTIG++VDHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS E
Sbjct: 81 SAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAE 140
Query: 61 ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEA 120
ELA ATQVQG YMPI E+ ELVK+T +MKS KA+DK+R+ER N+RH GAR K+AA+A
Sbjct: 141 ELANATQVQGDYMPIVREKHATELVKLTTEMKSVKAFDKIRLERTNKRHAGARAKRAADA 200
Query: 121 EKEEKK 126
EKEEKK
Sbjct: 201 EKEEKK 206
>sp|P41127|RL131_ARATH 60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1
SV=1
Length = 206
Score = 189 bits (479), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 88/111 (79%), Positives = 101/111 (90%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
AAGIPKKLAPTIG++VDHRRKNRSLEGLQ+NVQRLKTYK KLV+FPRRARK KAGDS PE
Sbjct: 81 AAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPE 140
Query: 61 ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 111
ELA ATQVQG Y+PI E+PT+ELVK+T +MKSFKA+DK+R+ER N+RH G
Sbjct: 141 ELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAG 191
>sp|Q9FF90|RL133_ARATH 60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2
SV=1
Length = 206
Score = 179 bits (453), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 85/105 (80%), Positives = 95/105 (90%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
AGIPKKLAPTIG+SVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRR+R+ KAGDS PEE
Sbjct: 82 AGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEE 141
Query: 62 LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVN 106
LA ATQVQG YMPIA + +ELVK+T D+K+FKAYDK+R+ER N
Sbjct: 142 LANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIRLERTN 186
>sp|Q9SMT4|RL132_ARATH Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana
GN=RPL13C PE=3 SV=1
Length = 206
Score = 172 bits (435), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 93/112 (83%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
AAGIPKKLAPTIG+SVDH RKNRSLEG Q+NVQRLKTYKAKLV+FPR AR K GDSA +
Sbjct: 81 AAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQ 140
Query: 61 ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGA 112
ELA ATQVQ +MPI E PT+ELVK+T DMK F AYDK+R+E +N+RH G
Sbjct: 141 ELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGV 192
>sp|P49627|RL13_TOBAC 60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1
Length = 202
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/116 (63%), Positives = 88/116 (75%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
AAGIPKKLAPTIG++VDHRR+NRSLEGLQ+NVQRL+ + +LVVFPRRA + + P
Sbjct: 77 AAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRRASRSRLVILPPR 136
Query: 61 ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKK 116
TATQV G YMPI E+ + L KV + MKSF AY KLR+ER NERH GARMK+
Sbjct: 137 NCLTATQVHGAYMPIEREKHQLILSKVLKKMKSFNAYAKLRVERTNERHIGARMKR 192
>sp|O48513|RL13_CHLSW 60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80)
GN=RPL13 PE=2 SV=1
Length = 208
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 94/126 (74%), Gaps = 2/126 (1%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
AGIP K APT+G++VDHRRKNRSLE LQ+NVQRLKTY+A LV+FPR +K KA +++ +
Sbjct: 83 AGIPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIFPRNMKKPKAFEASAAD 142
Query: 62 LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAE-- 119
+ A+Q +G +P+ +P +ELVK+T DMK Y KLRIERVN R G R K+AA+
Sbjct: 143 CSAASQAKGELLPLKGTKPALELVKITADMKEGSQYGKLRIERVNARLKGMREKRAADEA 202
Query: 120 AEKEEK 125
A+K++K
Sbjct: 203 AKKDDK 208
>sp|Q90Z10|RL13_DANRE 60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3
Length = 211
Score = 128 bits (322), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 87/124 (70%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
AAGI KK+A TIG+SVD RR+NRS E LQ+NVQRLK Y+ KL++FPR+A K K GDS E
Sbjct: 83 AAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAKPKKGDSTEE 142
Query: 61 ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEA 120
EL ATQ+ GP MPI + +++D K+FKA+ LR+ R N R FG R K+A EA
Sbjct: 143 ELKMATQLTGPVMPIKKVHKKEKARVISEDEKNFKAFASLRMARANARLFGIRAKRAKEA 202
Query: 121 EKEE 124
+++
Sbjct: 203 AEQD 206
>sp|P41123|RL13_RAT 60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2
Length = 211
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 86/123 (69%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+ K GDS+ EE
Sbjct: 84 AGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEE 143
Query: 62 LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEAE 121
L ATQ+ GP MPI + +T++ K+FKA+ LR+ R N R FG R K+A EA
Sbjct: 144 LKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRMARANARLFGIRAKRAKEAA 203
Query: 122 KEE 124
+++
Sbjct: 204 EQD 206
>sp|P41125|RL13_CHICK 60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2
Length = 211
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 86/123 (69%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
AGI K+ A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+ K GDS+PEE
Sbjct: 84 AGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSPEE 143
Query: 62 LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEAE 121
L ATQ+ GP MPI + ++++ K+FKA+ LR+ R N R FG R K+A EA
Sbjct: 144 LKMATQLSGPVMPIRNVFKREKARVISEEEKNFKAFASLRMARANARLFGIRAKRAKEAA 203
Query: 122 KEE 124
+++
Sbjct: 204 EQD 206
>sp|P47963|RL13_MOUSE 60S ribosomal protein L13 OS=Mus musculus GN=Rpl13 PE=2 SV=3
Length = 211
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 86/123 (69%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+ K GDS+ EE
Sbjct: 84 AGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEE 143
Query: 62 LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEAE 121
L ATQ+ GP MPI + +T++ K+FKA+ LR+ R N R FG R K+A EA
Sbjct: 144 LKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAA 203
Query: 122 KEE 124
+++
Sbjct: 204 EQD 206
>sp|P26373|RL13_HUMAN 60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4
Length = 211
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 86/123 (69%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+ K GDS+ EE
Sbjct: 84 AGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEE 143
Query: 62 LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEAE 121
L ATQ+ GP MP+ + +T++ K+FKA+ LR+ R N R FG R K+A EA
Sbjct: 144 LKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAA 203
Query: 122 KEE 124
+++
Sbjct: 204 EQD 206
>sp|Q56JZ1|RL13_BOVIN 60S ribosomal protein L13 OS=Bos taurus GN=RPL13 PE=2 SV=3
Length = 211
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 85/123 (69%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
AGI KK+A TIG+SVD RR+N+ E LQ+NVQRLK Y++KL++FPR+ K GDS+ EE
Sbjct: 84 AGIHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEE 143
Query: 62 LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEAE 121
L ATQ+ GP MPI + +T++ K+FKA+ LR+ R N R FG R K+A EA
Sbjct: 144 LKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAA 203
Query: 122 KEE 124
+++
Sbjct: 204 EQD 206
>sp|P41126|RL13_DROME 60S ribosomal protein L13 OS=Drosophila melanogaster GN=RpL13 PE=2
SV=1
Length = 218
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 84/125 (67%), Gaps = 1/125 (0%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
AGI A TIG++VD RRKN+SLE Q N+QRLK Y++KL++FP +K +AG+S+ E
Sbjct: 82 GAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILFPINEKKIRAGESSLE 141
Query: 61 ELATATQVQGPYMPIAPERP-TVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAE 119
E ATQ++GP +PI E+P VE +VT+D K FKA+ LR R + R G R K+A E
Sbjct: 142 ECKLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATLRKARTDARLVGIRAKRAKE 201
Query: 120 AEKEE 124
A + E
Sbjct: 202 AAESE 206
>sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3
Length = 211
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 82/124 (66%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
AAGI K++A TIG++VD RR+NRS E L NVQRLK Y++KL++FPR+ K GDS E
Sbjct: 83 AAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPRKVSAPKKGDSTEE 142
Query: 61 ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEA 120
E+ ATQ+ GP MPI + +T++ K F A+ LR+ R N R FG R K+A EA
Sbjct: 143 EVKMATQLTGPVMPIKIVHKKEKARMITEEEKKFNAFANLRMARANARLFGIRAKRAKEA 202
Query: 121 EKEE 124
+++
Sbjct: 203 AEQD 206
>sp|Q9Z313|RL13_CRIGR 60S ribosomal protein L13 OS=Cricetulus griseus GN=RPL13 PE=2 SV=3
Length = 211
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 85/123 (69%)
Query: 2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+ K GDS+ EE
Sbjct: 84 AGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEE 143
Query: 62 LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEAE 121
L ATQ+ GP M I + +T++ K+FKA+ LR+ R N R FG R K+A EA
Sbjct: 144 LKLATQLTGPVMRIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAA 203
Query: 122 KEE 124
+++
Sbjct: 204 EQD 206
>sp|O46157|RL13_LUMRU 60S ribosomal protein L13 OS=Lumbricus rubellus GN=RPL13 PE=2 SV=1
Length = 188
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 81/127 (63%), Gaps = 8/127 (6%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
AAGI KK A IG+SVD RR+N+S+E LQ NVQRLK Y++KL++FP++ K GD+ E
Sbjct: 59 AAGINKKEARAIGISVDVRRRNKSVESLQLNVQRLKEYRSKLILFPKKLSKPNKGDATEE 118
Query: 61 ELATATQVQGPYMP----IAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKK 116
E+ ATQ++G +P I PE+ +T + + K +D+LR R ++R G R KK
Sbjct: 119 EMKLATQLKGKLLPRTAWIKPEKARA----ITDEERKVKVFDRLRQARAHKRLAGKRAKK 174
Query: 117 AAEAEKE 123
A EA E
Sbjct: 175 AKEAGGE 181
>sp|P91128|RL13_CAEEL 60S ribosomal protein L13 OS=Caenorhabditis elegans GN=rpl-13 PE=3
SV=1
Length = 207
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 81/125 (64%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
AAGI + A TIG++VD RR N++ EGL++N RLK YKAKL++FP++A K GDS+ E
Sbjct: 83 AAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAE 142
Query: 61 ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEA 120
EL A Q++G +P++ E +VT + + + LR ER ++++ G R K+A EA
Sbjct: 143 ELKVAAQLRGDVLPLSHTITFDEPRQVTDAERKVEIFRLLRKERADKKYRGKREKRAREA 202
Query: 121 EKEEK 125
+E K
Sbjct: 203 AEENK 207
>sp|Q962U1|RL13_SPOFR 60S ribosomal protein L13 OS=Spodoptera frugiperda GN=RpL13 PE=2
SV=1
Length = 219
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
AAG+ A TIG++VD RR+N+S+E LQ NVQRLK Y+A+L++FP + +K G++ E
Sbjct: 82 AAGLNPAFARTIGIAVDPRRRNKSVESLQVNVQRLKEYRARLILFP-KGKKVLKGEANEE 140
Query: 61 ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEA 120
E ATQ++GP MP+ P +T++ K FKAY LR R + G R K+ +A
Sbjct: 141 ERKLATQLRGPLMPVQQPAPKSIARAITEEEKDFKAYQYLRGARSIAKLVGIRAKRLKDA 200
>sp|Q95043|RL13_SCHMA 60S ribosomal protein L13 OS=Schistosoma mansoni GN=RPL13 PE=2 SV=1
Length = 184
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 64/101 (63%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
AAG+ K A TIG++VDHRR+N S+EGLQ NV RLK YKAKL++FP K +A D+ +
Sbjct: 82 AAGLNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILFPLNPAKPQAMDAKAD 141
Query: 61 ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLR 101
E+ ATQ++ P +PI ++ K T + A+ +R
Sbjct: 142 EVKKATQLRRPVLPITQRAKRLKAHKPTSSELRYSAFHAIR 182
>sp|O74175|RL13_SCHPO 60S ribosomal protein L13 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl13 PE=1 SV=1
Length = 208
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 66/104 (63%), Gaps = 4/104 (3%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
AAG+ +++A TIG+ VDHRR+NRS E LQ NV+R+K Y A L+VFPR+A + K GD+
Sbjct: 82 AAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDV 141
Query: 61 ELATATQVQGPYMPIAPERPTVELVK-VTQDMKSFKAYDKLRIE 103
A T V +PI E VE K +T++ K+F A+ L E
Sbjct: 142 SGAEQTDVAA-VLPITQE--AVEEAKPITEEAKNFNAFSTLSNE 182
>sp|Q54E20|RL13_DICDI 60S ribosomal protein L13 OS=Dictyostelium discoideum GN=rpl13 PE=1
SV=1
Length = 209
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
AAG+ + A TIG++VD RR N++ + L N QRLK Y++KLV+FPR+ K G++ E
Sbjct: 81 AAGLTAQYARTIGIAVDTRRVNKTQQSLTLNTQRLKNYQSKLVLFPRKVNAPKKGEATKE 140
Query: 61 ELATATQVQGPYMPIAPERPTVELV--KVTQDMKSFKAYDKLRIERVNERHFGAR 113
E+A A Q P+ + T E K T+ K F AY L+ + G R
Sbjct: 141 EVAKAVQTLKPFTVKSAIAVTCEQTPRKPTEAEKKFSAYATLKAADSKAKTVGIR 195
>sp|P0DJ58|RL13_TETTS 60S ribosomal protein L13 OS=Tetrahymena thermophila (strain SB210)
GN=RPL13 PE=1 SV=1
Length = 206
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAG---DS 57
AAGI A +IG+ VDHRRKNR E L+ N +RL Y +KLV+FPR K K G D+
Sbjct: 80 AAGISAAFAQSIGIKVDHRRKNRCQESLELNKKRLLAYVSKLVLFPRHQGKAKKGLVNDT 139
Query: 58 APEELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 111
A A +Q +P+ + V +++ K Y +R E+ N++ G
Sbjct: 140 ADTSSAAQNALQTS-VPLPSVSKREKAVSNIAELRKKKVYRIIRQEKTNQKWDG 192
>sp|Q876B2|RL13_SACEX 60S ribosomal protein L13 OS=Saccharomyces exiguus GN=RPL13 PE=3
SV=1
Length = 199
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 64/115 (55%), Gaps = 19/115 (16%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
AAG+ A TIG++VDHRR+N++ E + NVQRLK Y++K++VFPR + PE
Sbjct: 82 AAGLTPAYARTIGIAVDHRRQNKNQEMFELNVQRLKEYQSKIIVFPRNGK-------VPE 134
Query: 61 E---LATATQVQGPYMPIAPERPTVEL-VKVTQDMKSFKAYDKLRIERVNERHFG 111
L+TA PIA +P VE + QD AY LR+ R +R+ G
Sbjct: 135 TEQVLSTAAA-----FPIA--QPAVETETRAVQD-NGESAYRTLRMARSEKRYKG 181
>sp|Q12690|RL13A_YEAST 60S ribosomal protein L13-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL13A PE=1 SV=1
Length = 199
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 60/111 (54%), Gaps = 11/111 (9%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
AAG+ A TIG++VDHRR+NR+ E +NVQRLK Y++K++VFPR + APE
Sbjct: 82 AAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRNGK-------APE 134
Query: 61 ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 111
A PIA VE V + +S A+ LR+ R ++ G
Sbjct: 135 --AEQVLSAAATFPIAQPATDVEARAVQDNGES--AFRTLRLARSEKKFRG 181
>sp|P40212|RL13B_YEAST 60S ribosomal protein L13-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL13B PE=1 SV=1
Length = 199
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 60/111 (54%), Gaps = 11/111 (9%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
AAG+ A TIG++VDHRR+NR+ E +NVQRLK Y++K++VFPR + APE
Sbjct: 82 AAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRDGK-------APE 134
Query: 61 ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 111
A PIA VE V + +S A+ LR+ R ++ G
Sbjct: 135 --AEQVLSAAATFPIAQPATDVEARAVQDNGES--AFRTLRLARSEKKFRG 181
>sp|O59931|RL13_CANAL 60S ribosomal protein L13 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=RPL13 PE=3 SV=1
Length = 202
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 10/110 (9%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
A GI K A TIG+SVDHRR+N+S E +NV RL+ YK+KLV+F ++ + +
Sbjct: 82 AVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIFDKKTKASEVASFEQV 141
Query: 61 ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHF 110
+++ V+ P APE + V+V + AY LR+ R NE+ +
Sbjct: 142 DVSATFPVEQP----APE-SGLRAVEVPEQT----AYRTLRLAR-NEKKY 181
>sp|Q9P2P1|NYNRI_HUMAN Protein NYNRIN OS=Homo sapiens GN=NYNRIN PE=2 SV=3
Length = 1898
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 22 NRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE------ELATATQVQGPYMPI 75
++S+ G Q+ + LK A V + + +AP+ LA T+ P +P+
Sbjct: 531 DQSVPGAQTVPETLKVPMAAAVPKAENPSRTQVPSAAPKLPTSRMMLAVHTEPAAPEVPL 590
Query: 76 APERPTVELVKVTQ 89
AP +PT +L+ Q
Sbjct: 591 APTKPTAQLMATAQ 604
>sp|Q9JYK8|SECA_NEIMB Protein translocase subunit SecA OS=Neisseria meningitidis
serogroup B (strain MC58) GN=secA PE=3 SV=1
Length = 916
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQ 33
AA I +LAP GV+++H R +EG Q V+
Sbjct: 605 AAAILNRLAPERGVAIEHNLLTRQIEGAQRKVE 637
>sp|A1ISV1|SECA_NEIMA Protein translocase subunit SecA OS=Neisseria meningitidis
serogroup A / serotype 4A (strain Z2491) GN=secA PE=3
SV=1
Length = 916
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQ 33
AA I +LAP GV+++H R +EG Q V+
Sbjct: 605 AAAILNRLAPERGVAIEHNLLTRQIEGAQRKVE 637
>sp|B4RKY2|SECA_NEIG2 Protein translocase subunit SecA OS=Neisseria gonorrhoeae (strain
NCCP11945) GN=secA PE=3 SV=1
Length = 916
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQ 33
AA I +LAP GV+++H R +EG Q V+
Sbjct: 605 AAAILNRLAPERGVAIEHNLLTRQIEGAQRKVE 637
>sp|Q5F807|SECA_NEIG1 Protein translocase subunit SecA OS=Neisseria gonorrhoeae (strain
ATCC 700825 / FA 1090) GN=secA PE=3 SV=1
Length = 916
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQ 33
AA I +LAP GV+++H R +EG Q V+
Sbjct: 605 AAAILNRLAPERGVAIEHNLLTRQIEGAQRKVE 637
>sp|A1KUX1|SECA_NEIMF Protein translocase subunit SecA OS=Neisseria meningitidis
serogroup C / serotype 2a (strain ATCC 700532 / FAM18)
GN=secA PE=3 SV=1
Length = 916
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQ 33
AA I +LAP GV+++H R +EG Q V+
Sbjct: 605 AAAILNRLAPERGVAIEHNLLTRQIEGAQRKVE 637
>sp|A9M0X2|SECA_NEIM0 Protein translocase subunit SecA OS=Neisseria meningitidis
serogroup C (strain 053442) GN=secA PE=3 SV=1
Length = 916
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQ 33
AA I +LAP GV+++H R +EG Q V+
Sbjct: 605 AAAILNRLAPERGVAIEHNLLTRQIEGAQRKVE 637
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,146,784
Number of Sequences: 539616
Number of extensions: 1475518
Number of successful extensions: 3565
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 3515
Number of HSP's gapped (non-prelim): 54
length of query: 126
length of database: 191,569,459
effective HSP length: 92
effective length of query: 34
effective length of database: 141,924,787
effective search space: 4825442758
effective search space used: 4825442758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)