Query 041207
Match_columns 126
No_of_seqs 122 out of 274
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 07:43:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041207.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041207hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uf5a_ d.160.1.2 (A:) N-carba 47.0 4 0.00029 29.2 1.8 22 26-47 18-46 (303)
2 d1j31a_ d.160.1.2 (A:) Hypothe 30.3 13 0.00095 25.9 2.3 22 26-47 14-42 (262)
3 d1twia2 c.1.6.1 (A:50-313) Dia 27.4 16 0.0012 25.7 2.4 45 24-68 1-66 (264)
4 d1f89a_ d.160.1.1 (A:) hypothe 22.7 19 0.0014 24.8 2.0 23 25-47 21-52 (281)
5 d1emsa2 d.160.1.1 (A:10-280) N 18.5 33 0.0024 23.5 2.5 23 26-48 17-46 (271)
6 d2pq6a1 c.87.1.10 (A:8-480) (I 17.9 39 0.0028 23.7 2.8 23 11-36 408-430 (473)
7 d2gf3a2 d.16.1.3 (A:218-321) S 15.6 44 0.0032 20.4 2.3 33 11-43 53-85 (104)
8 d1nd9a_ a.6.1.6 (A:) N-termina 12.2 8.1 0.00059 22.3 -2.0 7 86-92 35-41 (49)
9 d1f46a_ d.129.4.1 (A:) Cell-di 11.5 1E+02 0.0074 19.9 3.4 28 13-40 109-136 (139)
10 d1iiea_ a.109.1.1 (A:) Class I 11.0 44 0.0032 20.7 1.2 13 26-38 27-39 (75)
No 1
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]}
Probab=46.96 E-value=4 Score=29.18 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHhh-------hhcceeecC
Q 041207 26 EGLQSNVQRLKTY-------KAKLVVFPR 47 (126)
Q Consensus 26 Esl~~NVqRLKeY-------~skLilfPr 47 (126)
|+.+.|++|+.++ -+.|||||-
T Consensus 18 ~~~~~~l~r~~~li~~A~~~gadlvvfPE 46 (303)
T d1uf5a_ 18 ETREQVVVRLLDMLTKAASRGANFIVFPE 46 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSEEECCT
T ss_pred cCHHHHHHHHHHHHHHHHHCCCcEEEcCC
Confidence 7889999999887 358999996
No 2
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=30.25 E-value=13 Score=25.87 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHhhhh-------cceeecC
Q 041207 26 EGLQSNVQRLKTYKA-------KLVVFPR 47 (126)
Q Consensus 26 Esl~~NVqRLKeY~s-------kLilfPr 47 (126)
..++.|++++.+|.. .|||||=
T Consensus 14 ~d~e~nl~~i~~~i~~A~~~gadlvvfPE 42 (262)
T d1j31a_ 14 LELDKNYSKAEKLIKEASKEGAKLVVLPE 42 (262)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCSEEECCT
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEcCC
Confidence 458899999998874 5999996
No 3
>d1twia2 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=27.41 E-value=16 Score=25.68 Aligned_cols=45 Identities=27% Similarity=0.259 Sum_probs=31.3
Q ss_pred chhhHHHHHHHHHhhhhc---------ceeecCCcccc--------ccC---C-CCHHHhhhhhhc
Q 041207 24 SLEGLQSNVQRLKTYKAK---------LVVFPRRARKF--------KAG---D-SAPEELATATQV 68 (126)
Q Consensus 24 S~Esl~~NVqRLKeY~sk---------LilfPrk~~kp--------kkG---D-s~~ee~~~a~q~ 68 (126)
|+|.+..|.+|+++-..+ +|.|+-|++-- +.| | +|..|+..|.+.
T Consensus 1 s~~~i~~n~~~~~~af~~~~~~~g~~~~i~YAvKaN~~~~vl~~l~~~G~g~Dv~S~~El~~al~~ 66 (264)
T d1twia2 1 SEEQIKINYNRYIEAFKRWEEETGKEFIVAYAYKANANLAITRLLAKLGCGADVVSGGELYIAKLS 66 (264)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEeccCCCHHHHHHHHHcCCCeeeecccHHHHHhhc
Confidence 789999999998875532 37899988742 223 2 466777776654
No 4
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.72 E-value=19 Score=24.78 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHhhhh---------cceeecC
Q 041207 25 LEGLQSNVQRLKTYKA---------KLVVFPR 47 (126)
Q Consensus 25 ~Esl~~NVqRLKeY~s---------kLilfPr 47 (126)
...++.|.+++..|.. +|||||=
T Consensus 21 ~~D~~~N~~~~~~~i~~A~~~~~~a~lvv~PE 52 (281)
T d1f89a_ 21 SPDKMANLQRAATFIERAMKEQPDTKLVVLPE 52 (281)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHCTTEEEEECCT
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 3567889999988743 3999998
No 5
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=18.52 E-value=33 Score=23.53 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHhhh-------hcceeecCC
Q 041207 26 EGLQSNVQRLKTYK-------AKLVVFPRR 48 (126)
Q Consensus 26 Esl~~NVqRLKeY~-------skLilfPrk 48 (126)
..++.|.+++..+. ..|||||=-
T Consensus 17 ~d~~~N~~~i~~~i~~A~~~gadlvvfPE~ 46 (271)
T d1emsa2 17 NDLEKNFQAAKNMIERAGEKKCEMVFLPEC 46 (271)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCSEEEECTT
T ss_pred CCHHHHHHHHHHHHHHHHHCcCeEEECCcc
Confidence 57888988877654 489999973
No 6
>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase {Medicago truncatula [TaxId: 3880]}
Probab=17.91 E-value=39 Score=23.72 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=18.4
Q ss_pred ccCeeeccCCCCCchhhHHHHHHHHH
Q 041207 11 TIGVSVDHRRKNRSLEGLQSNVQRLK 36 (126)
Q Consensus 11 tIGIaVD~RR~N~S~Esl~~NVqRLK 36 (126)
-+|+.+| .|.|.|.|..-|.+|-
T Consensus 408 G~G~~l~---~~~t~~~l~~ai~~vl 430 (473)
T d2pq6a1 408 EIGMEID---TNVKREELAKLINEVI 430 (473)
T ss_dssp CCEEECC---SSCCHHHHHHHHHHHH
T ss_pred CeEEeeC---CCcCHHHHHHHHHHHH
Confidence 5677777 3789999999999983
No 7
>d2gf3a2 d.16.1.3 (A:218-321) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}
Probab=15.58 E-value=44 Score=20.36 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=23.9
Q ss_pred ccCeeeccCCCCCchhhHHHHHHHHHhhhhcce
Q 041207 11 TIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLV 43 (126)
Q Consensus 11 tIGIaVD~RR~N~S~Esl~~NVqRLKeY~skLi 43 (126)
.=|-.+|+-..++....-...+++|..|..+.+
T Consensus 53 ~~g~~~dPd~~dr~~~~~~~~~~~l~~~v~~~~ 85 (104)
T d2gf3a2 53 TFGQKIDPDTINREFGVYPEDESNLRAFLEEYM 85 (104)
T ss_dssp SCCEECCTTTCCCCTTSSHHHHHHHHHHHHHHC
T ss_pred cCCCccCccccccCCCCCHHHHHHHHHHHHHHC
Confidence 356788887777655455677888888888764
No 8
>d1nd9a_ a.6.1.6 (A:) N-terminal subdomain of bacterial translation initiation factor IF2 {Escherichia coli [TaxId: 562]}
Probab=12.16 E-value=8.1 Score=22.27 Aligned_cols=7 Identities=29% Similarity=0.330 Sum_probs=3.6
Q ss_pred ccCcccc
Q 041207 86 KVTQDMK 92 (126)
Q Consensus 86 ~it~eek 92 (126)
.||++||
T Consensus 35 ~vt~~eK 41 (49)
T d1nd9a_ 35 SVSAQEK 41 (49)
T ss_dssp CEETTGG
T ss_pred ccCHHHH
Confidence 3555554
No 9
>d1f46a_ d.129.4.1 (A:) Cell-division protein ZipA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.46 E-value=1e+02 Score=19.93 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=24.9
Q ss_pred CeeeccCCCCCchhhHHHHHHHHHhhhh
Q 041207 13 GVSVDHRRKNRSLEGLQSNVQRLKTYKA 40 (126)
Q Consensus 13 GIaVD~RR~N~S~Esl~~NVqRLKeY~s 40 (126)
|-=+|-.|.-.|.+.++.=-++|++|..
T Consensus 109 g~l~D~~r~~lt~q~i~~~R~~i~e~e~ 136 (139)
T d1f46a_ 109 GVVLDDQRRMMTPQKLREYQDIIREVKD 136 (139)
T ss_dssp CEEECTTSCBCCHHHHHHHHHHHHHHHH
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHH
Confidence 5668999999999999999999999875
No 10
>d1iiea_ a.109.1.1 (A:) Class II MHC-associated invariant chain ectoplasmic trimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.95 E-value=44 Score=20.73 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHhh
Q 041207 26 EGLQSNVQRLKTY 38 (126)
Q Consensus 26 Esl~~NVqRLKeY 38 (126)
+|+..|++.||.-
T Consensus 27 ~sf~~NLk~LK~~ 39 (75)
T d1iiea_ 27 GSFPENLRHLKNT 39 (75)
T ss_dssp SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7899999999853
Done!