BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041208
(89 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 33.1 bits (74), Expect = 0.036, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 41 DTDFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQRKEGP 78
DTD GHGTH S G+F K VS FG R P
Sbjct: 99 DTD--GHGTHCASITAGNFAKGVSHFGYAPGTARGVAP 134
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 5 TTRSWDFLGMEKDNIMPPNSLWNKARFGEDVIIGNIDT 42
TT + DFL + P + LW + G+DVI+ +D+
Sbjct: 1 TTHTSDFLKLN-----PSSGLWPASGLGQDVIVAVLDS 33
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like
Enzyme From A Psychrotroph Serratia Species
Length = 278
Score = 33.1 bits (74), Expect = 0.043, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 23 NSLWNKARFGEDVIIGNID-TDFHGHGTHTLSTVGGS---FVKNVSAFG 67
N +A G D I + D TD +GHGTH T+GGS KNV+ G
Sbjct: 47 NEFGGRASSGYDFIDNDYDATDCNGHGTHVAGTIGGSTYGVAKNVNVVG 95
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 28 KARFGEDVIIGNIDTDFHGHGTHTLSTVGG 57
+AR G D + GN D +GHGTH T+GG
Sbjct: 52 RARVGYDALGGN-GQDCNGHGTHVAGTIGG 80
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 30.8 bits (68), Expect = 0.23, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 41/124 (33%), Gaps = 52/124 (41%)
Query: 5 TTRSWDFLGM------------------------------EKDNIMPPNSLW-------N 27
TTRSWDFLG + + PP W N
Sbjct: 1 TTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSN 60
Query: 28 KARFGEDVI------IG--------NIDTDFHGHGTHTLSTVGGSFVKNVSAFGNVGDGQ 73
R +I IG N D +GHGTHT ST G V + +G +G G
Sbjct: 61 NFRCNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYG-LGLGT 119
Query: 74 RKEG 77
+ G
Sbjct: 120 ARGG 123
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like
Serine Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like
Serine Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like
Serine Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like
Serine Proteinase
Length = 284
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 32 GEDVIIGNIDT-DFHGHGTHTLSTVGGS---FVKNVSAFG 67
G D + + D+ D +GHGTH T+GGS KNV+ G
Sbjct: 54 GYDFVDNDADSSDCNGHGTHVAGTIGGSQYGVAKNVNIVG 93
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 43 DFHGHGTHTLSTVGGS---FVKNVSAFG 67
D HGHGTH T+G K VS FG
Sbjct: 66 DGHGHGTHCAGTIGSKTWGVAKKVSIFG 93
>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQF|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
Length = 326
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 1 MELLTTRSWDFLGMEKDNIMPPNSLWNKARF 31
+++LT +W F G+ K+ ++ + + ARF
Sbjct: 125 VDILTYATWKFSGLPKERVIGSGTTLDSARF 155
>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|E Chain E, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|F Chain F, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|G Chain G, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|H Chain H, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
Length = 326
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 1 MELLTTRSWDFLGMEKDNIMPPNSLWNKARF 31
+++LT +W F G+ K+ ++ + + ARF
Sbjct: 125 VDILTYATWKFSGLPKERVIGSGTTLDSARF 155
>pdb|3AI7|A Chain A, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|B Chain B, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|C Chain C, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|D Chain D, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|E Chain E, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|F Chain F, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|G Chain G, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|H Chain H, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
Length = 831
Score = 25.4 bits (54), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 50 HTLSTVGGSFVKNVSAF--GNVGDGQRKEGPLKPEWH 84
+ LS G+ + N S F VGDG+ + GPL W
Sbjct: 159 YALSHAYGAIMDNPSLFVPAIVGDGEAETGPLATGWQ 195
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.138 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,261,709
Number of Sequences: 62578
Number of extensions: 128725
Number of successful extensions: 292
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 16
length of query: 89
length of database: 14,973,337
effective HSP length: 56
effective length of query: 33
effective length of database: 11,468,969
effective search space: 378475977
effective search space used: 378475977
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)