Query 041209
Match_columns 412
No_of_seqs 266 out of 2183
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 04:51:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041209.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041209hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 1.7E-80 3.8E-85 584.1 38.1 374 1-376 203-645 (663)
2 PTZ00009 heat shock 70 kDa pro 100.0 7.7E-73 1.7E-77 596.8 47.7 411 1-412 171-653 (653)
3 KOG0101 Molecular chaperones H 100.0 8.2E-63 1.8E-67 497.4 33.0 372 1-374 174-614 (620)
4 PLN03184 chloroplast Hsp70; Pr 100.0 2.9E-61 6.3E-66 508.9 46.2 366 1-377 203-639 (673)
5 PRK13411 molecular chaperone D 100.0 1.3E-61 2.8E-66 511.0 43.1 368 1-376 164-603 (653)
6 PTZ00186 heat shock 70 kDa pre 100.0 5.2E-61 1.1E-65 503.6 44.4 366 1-376 191-627 (657)
7 PRK13410 molecular chaperone D 100.0 1.2E-60 2.7E-65 502.7 42.8 368 1-374 166-607 (668)
8 PTZ00400 DnaK-type molecular c 100.0 3.3E-60 7E-65 500.7 41.6 366 1-377 205-641 (663)
9 PRK00290 dnaK molecular chaper 100.0 2E-59 4.3E-64 494.3 43.4 365 1-376 164-599 (627)
10 CHL00094 dnaK heat shock prote 100.0 1.1E-58 2.3E-63 487.5 43.1 363 1-374 166-599 (621)
11 TIGR02350 prok_dnaK chaperone 100.0 1.2E-58 2.7E-63 486.4 42.7 362 1-373 161-594 (595)
12 TIGR01991 HscA Fe-S protein as 100.0 1E-56 2.2E-61 470.0 43.7 359 1-374 160-585 (599)
13 KOG0102 Molecular chaperones m 100.0 5.5E-58 1.2E-62 446.0 30.1 369 1-377 191-630 (640)
14 PRK05183 hscA chaperone protei 100.0 6.9E-56 1.5E-60 464.7 41.5 358 1-375 180-602 (616)
15 PRK01433 hscA chaperone protei 100.0 7.1E-55 1.5E-59 453.6 40.5 348 1-367 172-572 (595)
16 PF00012 HSP70: Hsp70 protein; 100.0 4.2E-54 9E-59 454.2 39.9 365 1-374 166-602 (602)
17 COG0443 DnaK Molecular chapero 100.0 5E-53 1.1E-57 437.5 36.2 361 1-374 151-578 (579)
18 KOG0103 Molecular chaperones H 100.0 4.5E-52 9.8E-57 415.6 30.7 370 1-376 168-648 (727)
19 KOG0104 Molecular chaperones G 100.0 7.7E-45 1.7E-49 364.6 29.4 375 1-377 189-740 (902)
20 PRK11678 putative chaperone; P 99.9 6.5E-24 1.4E-28 214.6 17.8 164 1-171 188-448 (450)
21 PRK13928 rod shape-determining 99.8 1.5E-20 3.3E-25 184.7 16.0 163 1-171 126-324 (336)
22 PRK13927 rod shape-determining 99.8 1.3E-18 2.9E-23 170.8 15.7 164 1-171 127-325 (334)
23 PRK13929 rod-share determining 99.8 8.6E-18 1.9E-22 165.0 15.1 161 1-168 129-324 (335)
24 TIGR00904 mreB cell shape dete 99.8 1.7E-17 3.6E-22 163.0 15.6 163 1-170 129-327 (333)
25 PRK13930 rod shape-determining 99.7 2.9E-17 6.2E-22 161.4 15.0 163 1-171 131-329 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 99.6 8.1E-15 1.8E-19 141.8 11.7 159 1-169 124-320 (326)
27 TIGR02529 EutJ ethanolamine ut 99.5 1.2E-13 2.5E-18 129.2 11.0 132 1-166 92-238 (239)
28 PRK15080 ethanolamine utilizat 99.4 7.1E-13 1.5E-17 125.9 12.5 133 2-168 120-267 (267)
29 TIGR01174 ftsA cell division p 99.4 1.4E-12 3.1E-17 130.0 12.7 157 2-167 176-371 (371)
30 COG1077 MreB Actin-like ATPase 99.4 3.5E-12 7.6E-17 119.9 10.9 165 1-172 132-333 (342)
31 PRK09472 ftsA cell division pr 99.3 1.3E-11 2.8E-16 124.9 13.4 161 2-170 184-388 (420)
32 COG0849 ftsA Cell division ATP 98.3 6.6E-06 1.4E-10 82.3 12.6 161 2-171 183-381 (418)
33 PRK13917 plasmid segregation p 98.0 9.9E-05 2.1E-09 72.8 14.4 155 1-173 156-339 (344)
34 cd00012 ACTIN Actin; An ubiqui 98.0 4.3E-06 9.4E-11 83.4 4.0 164 1-170 127-347 (371)
35 smart00268 ACTIN Actin. ACTIN 97.3 0.00011 2.5E-09 73.2 2.7 163 2-170 128-347 (373)
36 PF02782 FGGY_C: FGGY family o 97.2 0.00075 1.6E-08 60.9 6.8 72 94-170 121-196 (198)
37 PF11104 PilM_2: Type IV pilus 97.2 0.0012 2.5E-08 65.2 8.6 75 93-168 244-339 (340)
38 PF00022 Actin: Actin; InterP 97.2 0.00054 1.2E-08 68.8 6.2 166 2-171 127-368 (393)
39 TIGR03192 benz_CoA_bzdQ benzoy 97.1 0.0023 5E-08 61.1 8.5 47 124-171 242-289 (293)
40 TIGR00241 CoA_E_activ CoA-subs 97.0 0.0022 4.8E-08 60.3 7.3 68 94-167 180-248 (248)
41 TIGR03739 PRTRC_D PRTRC system 96.9 0.012 2.5E-07 57.6 11.9 150 1-168 142-318 (320)
42 TIGR02261 benz_CoA_red_D benzo 96.7 0.0064 1.4E-07 57.2 7.9 45 124-168 214-262 (262)
43 PRK15027 xylulokinase; Provisi 96.6 0.0056 1.2E-07 63.4 8.0 82 87-173 355-437 (484)
44 TIGR03286 methan_mark_15 putat 96.6 0.0068 1.5E-07 60.2 7.8 45 124-169 358-402 (404)
45 PLN02669 xylulokinase 96.6 0.0082 1.8E-07 63.2 8.8 71 97-170 422-492 (556)
46 TIGR01315 5C_CHO_kinase FGGY-f 96.6 0.0076 1.6E-07 63.3 8.4 82 87-173 409-493 (541)
47 TIGR02259 benz_CoA_red_A benzo 96.5 0.0086 1.9E-07 59.1 7.7 46 123-168 383-432 (432)
48 PTZ00281 actin; Provisional 96.5 0.0015 3.3E-08 65.3 2.4 163 2-170 134-350 (376)
49 TIGR02628 fuculo_kin_coli L-fu 96.4 0.015 3.2E-07 59.9 9.1 50 122-173 394-443 (465)
50 PTZ00452 actin; Provisional 96.3 0.0055 1.2E-07 61.3 5.3 161 2-170 133-349 (375)
51 PTZ00280 Actin-related protein 96.3 0.013 2.8E-07 59.4 7.9 64 82-145 262-336 (414)
52 PRK04123 ribulokinase; Provisi 96.3 0.012 2.6E-07 61.9 7.7 51 121-173 438-489 (548)
53 COG1924 Activator of 2-hydroxy 96.2 0.018 3.8E-07 56.3 8.0 73 94-171 318-391 (396)
54 TIGR01312 XylB D-xylulose kina 96.2 0.017 3.8E-07 59.5 8.5 51 121-173 390-440 (481)
55 PRK00047 glpK glycerol kinase; 96.2 0.015 3.2E-07 60.5 7.9 50 122-173 404-453 (498)
56 PTZ00466 actin-like protein; P 96.2 0.0054 1.2E-07 61.4 4.3 162 2-169 139-353 (380)
57 TIGR01311 glycerol_kin glycero 96.1 0.015 3.3E-07 60.3 7.5 80 88-173 368-449 (493)
58 PTZ00294 glycerol kinase-like 96.0 0.019 4.1E-07 59.8 7.9 50 122-173 407-456 (504)
59 PRK10331 L-fuculokinase; Provi 96.0 0.019 4.2E-07 59.1 7.7 51 121-173 389-439 (470)
60 TIGR01234 L-ribulokinase L-rib 95.9 0.026 5.7E-07 59.2 8.0 81 87-173 404-486 (536)
61 PTZ00004 actin-2; Provisional 95.8 0.0074 1.6E-07 60.4 3.3 163 2-169 134-351 (378)
62 TIGR01314 gntK_FGGY gluconate 95.7 0.043 9.3E-07 57.1 8.6 80 89-173 371-451 (505)
63 PLN02295 glycerol kinase 95.6 0.035 7.7E-07 57.9 8.0 51 121-173 412-462 (512)
64 TIGR02627 rhamnulo_kin rhamnul 95.6 0.033 7.1E-07 57.2 7.4 50 121-173 387-436 (454)
65 PRK13317 pantothenate kinase; 95.6 0.046 9.9E-07 52.2 7.8 48 122-169 223-273 (277)
66 TIGR01175 pilM type IV pilus a 95.5 0.031 6.8E-07 55.1 6.8 51 96-146 255-307 (348)
67 PF06406 StbA: StbA protein; 95.5 0.016 3.5E-07 56.6 4.5 147 1-165 143-316 (318)
68 PRK10939 autoinducer-2 (AI-2) 95.4 0.045 9.7E-07 57.2 7.6 50 122-173 410-459 (520)
69 PRK10640 rhaB rhamnulokinase; 95.3 0.044 9.6E-07 56.5 7.3 50 121-173 375-424 (471)
70 KOG2531 Sugar (pentulose and h 95.3 0.072 1.6E-06 53.2 8.1 56 114-171 435-490 (545)
71 KOG2517 Ribulose kinase and re 95.3 0.062 1.3E-06 55.1 8.0 72 98-174 394-465 (516)
72 COG1070 XylB Sugar (pentulose 94.5 0.21 4.5E-06 52.0 9.5 81 87-172 369-450 (502)
73 COG4820 EutJ Ethanolamine util 93.5 0.16 3.4E-06 45.5 5.4 66 96-167 206-271 (277)
74 PTZ00009 heat shock 70 kDa pro 92.9 0.87 1.9E-05 49.0 11.2 24 380-403 615-638 (653)
75 COG1069 AraB Ribulose kinase [ 92.6 0.63 1.4E-05 47.8 8.9 62 107-173 420-481 (544)
76 PF01869 BcrAD_BadFG: BadF/Bad 92.5 0.54 1.2E-05 44.6 8.2 66 100-168 202-271 (271)
77 KOG0681 Actin-related protein 91.3 0.58 1.3E-05 47.8 6.9 77 86-171 532-615 (645)
78 COG0554 GlpK Glycerol kinase [ 90.5 1.6 3.4E-05 44.4 9.1 81 88-173 371-452 (499)
79 PF03702 UPF0075: Uncharacteri 88.1 2.3 4.9E-05 42.3 8.3 76 94-172 260-339 (364)
80 TIGR03281 methan_mark_12 putat 85.7 4.8 0.0001 38.6 8.6 49 123-174 264-315 (326)
81 PF02543 CmcH_NodU: Carbamoylt 84.7 5.3 0.00012 39.7 8.9 82 86-172 131-215 (360)
82 TIGR00555 panK_eukar pantothen 84.6 1.8 3.9E-05 41.4 5.3 47 120-166 229-278 (279)
83 PF07520 SrfB: Virulence facto 84.0 7 0.00015 43.4 10.0 85 82-171 729-835 (1002)
84 COG5277 Actin and related prot 82.3 1.7 3.6E-05 44.4 4.4 48 122-169 363-417 (444)
85 COG4972 PilM Tfp pilus assembl 80.6 5.3 0.00012 38.7 6.7 67 97-165 261-329 (354)
86 PRK00976 hypothetical protein; 79.8 8.7 0.00019 37.4 8.1 50 121-173 263-314 (326)
87 PRK03011 butyrate kinase; Prov 79.4 3.8 8.2E-05 40.7 5.6 47 121-167 295-344 (358)
88 KOG0676 Actin and related prot 78.7 1.8 4E-05 42.9 3.2 55 115-169 284-345 (372)
89 KOG0679 Actin-related protein 77.8 19 0.0004 35.7 9.6 48 122-169 342-398 (426)
90 PF07318 DUF1464: Protein of u 77.4 8.4 0.00018 37.8 7.2 55 120-174 259-319 (343)
91 PRK09585 anmK anhydro-N-acetyl 75.7 14 0.00031 36.7 8.5 70 98-171 266-339 (365)
92 PRK09343 prefoldin subunit bet 73.7 50 0.0011 27.2 10.5 83 291-377 27-113 (121)
93 TIGR00143 hypF [NiFe] hydrogen 72.2 8.4 0.00018 41.9 6.4 49 121-169 658-711 (711)
94 PRK10719 eutA reactivating fac 70.4 20 0.00043 36.7 8.1 97 101-213 65-167 (475)
95 PF08841 DDR: Diol dehydratase 69.3 5.6 0.00012 37.7 3.7 50 119-168 273-329 (332)
96 PF02801 Ketoacyl-synt_C: Beta 62.4 12 0.00026 30.5 4.1 46 102-147 25-72 (119)
97 KOG0677 Actin-related protein 56.2 7.7 0.00017 36.3 2.0 143 31-173 179-364 (389)
98 PLN02377 3-ketoacyl-CoA syntha 52.9 46 0.001 34.7 7.3 72 95-166 167-241 (502)
99 TIGR00744 ROK_glcA_fam ROK fam 52.6 30 0.00064 33.4 5.7 49 121-169 251-309 (318)
100 PRK05082 N-acetylmannosamine k 52.2 64 0.0014 30.6 7.9 69 100-169 213-287 (291)
101 PF07820 TraC: TraC-like prote 52.1 53 0.0011 25.7 5.7 25 354-378 41-65 (92)
102 PRK09557 fructokinase; Reviewe 50.8 31 0.00068 33.0 5.5 48 121-168 244-299 (301)
103 KOG1559 Gamma-glutamyl hydrola 50.0 1.5E+02 0.0032 27.7 9.2 51 122-173 112-166 (340)
104 cd00327 cond_enzymes Condensin 49.9 71 0.0015 29.3 7.6 52 104-155 11-65 (254)
105 PF08392 FAE1_CUT1_RppA: FAE1/ 49.8 32 0.00069 33.0 5.1 43 104-146 87-130 (290)
106 PRK09604 UGMP family protein; 49.8 42 0.00091 32.9 6.3 52 121-172 254-310 (332)
107 COG4020 Uncharacterized protei 49.7 1.2E+02 0.0027 28.4 8.7 108 71-198 13-172 (332)
108 KOG0680 Actin-related protein 49.6 25 0.00054 34.1 4.3 24 122-145 318-341 (400)
109 PF01968 Hydantoinase_A: Hydan 49.5 14 0.00031 35.5 2.8 67 98-167 218-284 (290)
110 KOG2708 Predicted metalloprote 49.0 1.4E+02 0.0031 27.6 8.9 129 32-167 147-301 (336)
111 PRK09605 bifunctional UGMP fam 48.9 67 0.0015 33.6 8.0 51 122-172 246-301 (535)
112 KOG0797 Actin-related protein 47.2 8 0.00017 39.6 0.7 52 121-172 526-591 (618)
113 PRK13310 N-acetyl-D-glucosamin 47.1 70 0.0015 30.6 7.3 47 122-168 246-300 (303)
114 TIGR03723 bact_gcp putative gl 46.9 54 0.0012 31.8 6.5 46 121-166 259-309 (314)
115 PLN03173 chalcone synthase; Pr 46.5 80 0.0017 31.8 7.8 44 103-146 105-149 (391)
116 PF14574 DUF4445: Domain of un 46.0 54 0.0012 33.2 6.4 85 82-167 289-374 (412)
117 PLN03170 chalcone synthase; Pr 45.5 74 0.0016 32.1 7.4 44 103-146 109-153 (401)
118 PRK07515 3-oxoacyl-(acyl carri 45.3 21 0.00047 35.4 3.5 38 98-135 267-304 (372)
119 COG3426 Butyrate kinase [Energ 44.8 32 0.0007 32.8 4.2 50 116-165 291-343 (358)
120 TIGR02707 butyr_kinase butyrat 44.3 28 0.00061 34.5 4.1 45 121-165 293-340 (351)
121 COG2377 Predicted molecular ch 44.2 71 0.0015 31.7 6.6 59 114-172 283-345 (371)
122 PLN03172 chalcone synthase fam 43.2 91 0.002 31.4 7.6 45 102-146 104-149 (393)
123 COG4457 SrfB Uncharacterized p 42.7 2E+02 0.0044 31.0 9.9 86 85-172 744-848 (1014)
124 KOG1794 N-Acetylglucosamine ki 42.3 60 0.0013 31.2 5.6 49 124-172 266-318 (336)
125 cd02198 YjgH_like YjgH belongs 42.3 59 0.0013 26.0 5.1 51 92-146 30-82 (111)
126 TIGR00067 glut_race glutamate 42.3 52 0.0011 30.9 5.3 41 121-165 172-212 (251)
127 PRK05952 3-oxoacyl-(acyl carri 42.3 41 0.00088 33.7 4.9 46 102-147 254-301 (381)
128 COG4296 Uncharacterized protei 42.2 48 0.001 27.8 4.4 22 338-359 90-112 (156)
129 PF06277 EutA: Ethanolamine ut 42.0 80 0.0017 32.4 6.9 68 102-172 63-138 (473)
130 PRK09185 3-oxoacyl-(acyl carri 41.4 45 0.00098 33.4 5.1 45 104-148 262-308 (392)
131 PLN03168 chalcone synthase; Pr 40.8 98 0.0021 31.1 7.4 46 101-146 102-148 (389)
132 COG0533 QRI7 Metal-dependent p 40.4 1.1E+02 0.0024 30.1 7.3 53 88-145 229-285 (342)
133 KOG0103 Molecular chaperones H 39.3 74 0.0016 34.1 6.2 44 328-371 671-725 (727)
134 PLN02939 transferase, transfer 39.1 1.7E+02 0.0036 33.1 9.2 73 272-344 237-310 (977)
135 PRK09698 D-allose kinase; Prov 38.4 1.2E+02 0.0026 28.8 7.5 49 121-169 236-295 (302)
136 PLN02854 3-ketoacyl-CoA syntha 38.2 1E+02 0.0022 32.3 7.1 43 104-146 192-235 (521)
137 PTZ00340 O-sialoglycoprotein e 38.1 79 0.0017 31.2 6.0 24 122-145 264-287 (345)
138 PLN02192 3-ketoacyl-CoA syntha 37.8 1.3E+02 0.0027 31.5 7.7 54 93-146 169-223 (511)
139 COG4907 Predicted membrane pro 37.4 26 0.00056 35.5 2.5 10 204-213 301-310 (595)
140 PRK06840 hypothetical protein; 37.2 81 0.0018 30.7 6.1 43 104-146 57-102 (339)
141 PRK07910 3-oxoacyl-(acyl carri 37.0 58 0.0013 33.0 5.2 45 103-147 287-333 (418)
142 PRK00865 glutamate racemase; P 36.9 67 0.0014 30.3 5.2 43 121-167 177-219 (261)
143 cd00825 decarbox_cond_enzymes 36.1 1.3E+02 0.0029 28.7 7.5 67 103-170 14-108 (332)
144 PF11593 Med3: Mediator comple 35.7 46 0.001 32.8 3.9 23 354-376 63-85 (379)
145 PRK09116 3-oxoacyl-(acyl carri 35.3 66 0.0014 32.5 5.2 55 101-155 274-330 (405)
146 KOG0104 Molecular chaperones G 34.9 2.9E+02 0.0063 30.2 9.8 53 323-375 774-838 (902)
147 cd00833 PKS polyketide synthas 34.6 71 0.0015 31.9 5.4 47 101-147 278-326 (421)
148 COG0533 QRI7 Metal-dependent p 34.1 88 0.0019 30.8 5.5 45 95-139 45-89 (342)
149 PRK07515 3-oxoacyl-(acyl carri 34.0 1.1E+02 0.0023 30.4 6.4 43 104-146 99-143 (372)
150 PRK06065 acetyl-CoA acetyltran 33.9 1E+02 0.0023 30.9 6.3 43 104-147 33-79 (392)
151 PRK09258 3-oxoacyl-(acyl carri 33.8 1.5E+02 0.0032 28.8 7.3 44 103-146 64-109 (338)
152 PRK07204 3-oxoacyl-(acyl carri 33.7 1.5E+02 0.0033 28.6 7.4 43 104-146 56-100 (329)
153 PRK14691 3-oxoacyl-(acyl carri 33.4 66 0.0014 31.7 4.7 47 101-147 205-253 (342)
154 PF06008 Laminin_I: Laminin Do 33.0 2.6E+02 0.0056 26.2 8.6 17 327-343 153-169 (264)
155 TIGR03150 fabF beta-ketoacyl-a 32.0 1.1E+02 0.0023 30.6 6.1 44 104-147 277-322 (407)
156 PF14574 DUF4445: Domain of un 32.0 75 0.0016 32.2 4.9 55 91-145 53-107 (412)
157 PRK12879 3-oxoacyl-(acyl carri 31.8 1E+02 0.0022 29.7 5.7 45 98-145 221-265 (325)
158 TIGR00747 fabH 3-oxoacyl-(acyl 31.7 1.2E+02 0.0027 29.0 6.4 44 103-146 54-99 (318)
159 PRK12880 3-oxoacyl-(acyl carri 31.7 76 0.0016 31.3 4.9 45 102-146 62-108 (353)
160 COG5185 HEC1 Protein involved 30.5 4.7E+02 0.01 26.9 9.9 43 275-317 281-327 (622)
161 PF10458 Val_tRNA-synt_C: Valy 30.3 1.9E+02 0.0041 20.9 5.6 42 299-340 11-52 (66)
162 PRK14158 heat shock protein Gr 30.2 4.1E+02 0.0089 23.9 10.0 71 299-371 65-135 (194)
163 PRK14878 UGMP family protein; 30.1 71 0.0015 31.2 4.3 42 97-138 41-82 (323)
164 PLN02404 6,7-dimethyl-8-ribity 29.7 27 0.00058 29.8 1.1 73 83-168 7-79 (141)
165 PRK10972 Z-ring-associated pro 29.7 3.1E+02 0.0066 22.3 8.9 67 299-372 29-97 (109)
166 TIGR00114 lumazine-synth 6,7-d 29.7 33 0.00072 29.1 1.7 60 99-168 13-72 (138)
167 PRK12419 riboflavin synthase s 29.6 31 0.00067 30.0 1.5 71 84-168 11-82 (158)
168 TIGR03722 arch_KAE1 universal 29.4 85 0.0018 30.5 4.7 41 98-138 43-83 (322)
169 PF07736 CM_1: Chorismate muta 29.4 89 0.0019 25.7 4.0 31 98-128 16-46 (118)
170 COG2192 Predicted carbamoyl tr 29.2 1.4E+02 0.003 31.3 6.2 83 86-173 254-338 (555)
171 KOG2003 TPR repeat-containing 29.1 1.5E+02 0.0032 30.4 6.2 22 350-371 711-732 (840)
172 PLN03169 chalcone synthase fam 28.0 2.1E+02 0.0046 28.7 7.4 45 102-146 108-153 (391)
173 PRK12879 3-oxoacyl-(acyl carri 27.3 2.2E+02 0.0048 27.2 7.3 45 102-146 55-101 (325)
174 cd00830 KAS_III Ketoacyl-acyl 27.1 1.6E+02 0.0034 28.1 6.2 43 104-146 54-98 (320)
175 TIGR00329 gcp_kae1 metallohydr 26.9 95 0.0021 30.0 4.6 46 96-141 44-89 (305)
176 COG0796 MurI Glutamate racemas 26.8 1.7E+02 0.0037 27.8 6.0 42 121-166 177-218 (269)
177 PRK07204 3-oxoacyl-(acyl carri 26.8 94 0.002 30.0 4.6 42 101-145 229-270 (329)
178 PHA02557 22 prohead core prote 26.6 5.6E+02 0.012 24.3 9.2 84 276-371 142-225 (271)
179 cd00751 thiolase Thiolase are 26.4 1.6E+02 0.0036 29.3 6.3 42 104-146 26-70 (386)
180 PF12238 MSA-2c: Merozoite sur 26.3 4.6E+02 0.0099 23.9 8.3 14 332-345 104-117 (205)
181 cd00827 init_cond_enzymes "ini 26.3 1.5E+02 0.0032 28.4 5.8 45 102-146 50-96 (324)
182 PRK06519 3-oxoacyl-(acyl carri 26.3 1.5E+02 0.0033 29.8 6.1 43 103-146 281-325 (398)
183 cd00830 KAS_III Ketoacyl-acyl 26.1 1.4E+02 0.003 28.6 5.6 44 99-145 220-263 (320)
184 PLN02920 pantothenate kinase 1 26.0 2.1E+02 0.0045 28.8 6.7 49 120-168 296-350 (398)
185 PLN00415 3-ketoacyl-CoA syntha 25.7 1.5E+02 0.0032 30.7 5.7 41 106-146 140-181 (466)
186 PRK14878 UGMP family protein; 25.7 1.5E+02 0.0033 28.9 5.7 24 122-145 242-265 (323)
187 KOG2872 Uroporphyrinogen decar 25.7 1.4E+02 0.003 28.8 5.0 46 85-132 217-262 (359)
188 PRK06158 thiolase; Provisional 25.6 1.7E+02 0.0036 29.3 6.2 40 104-145 32-71 (384)
189 PRK06816 3-oxoacyl-(acyl carri 25.5 2E+02 0.0043 28.6 6.7 43 104-146 67-111 (378)
190 TIGR00747 fabH 3-oxoacyl-(acyl 25.3 1.6E+02 0.0035 28.2 5.9 44 99-145 216-259 (318)
191 PRK09352 3-oxoacyl-(acyl carri 25.2 2.1E+02 0.0046 27.3 6.7 44 103-146 55-100 (319)
192 PRK06366 acetyl-CoA acetyltran 24.9 1.8E+02 0.004 29.0 6.3 24 104-127 30-53 (388)
193 PLN03171 chalcone synthase-lik 24.7 2E+02 0.0043 29.0 6.5 48 99-146 107-155 (399)
194 PF00814 Peptidase_M22: Glycop 24.6 77 0.0017 30.0 3.4 44 98-141 27-70 (268)
195 PF06075 DUF936: Plant protein 24.5 1.6E+02 0.0034 31.4 5.8 63 306-369 501-567 (579)
196 PLN02787 3-oxoacyl-[acyl-carri 24.4 98 0.0021 32.6 4.4 45 103-147 406-452 (540)
197 PF03646 FlaG: FlaG protein; 24.4 1.4E+02 0.0031 23.7 4.5 44 240-287 55-99 (107)
198 cd06152 YjgF_YER057c_UK114_lik 24.3 2E+02 0.0043 23.3 5.3 53 91-147 30-87 (114)
199 PRK07801 acetyl-CoA acetyltran 24.1 2.2E+02 0.0048 28.3 6.7 24 104-127 30-53 (382)
200 PRK06954 acetyl-CoA acetyltran 24.1 1.6E+02 0.0035 29.6 5.7 24 104-127 35-58 (397)
201 PTZ00340 O-sialoglycoprotein e 24.0 1.3E+02 0.0027 29.8 4.8 46 95-140 44-89 (345)
202 cd00832 CLF Chain-length facto 23.6 1.8E+02 0.0039 29.2 6.0 46 102-147 270-317 (399)
203 PF03630 Fumble: Fumble ; Int 23.6 2.3E+02 0.0049 28.0 6.5 49 120-168 286-340 (341)
204 COG0332 FabH 3-oxoacyl-[acyl-c 23.5 3.5E+02 0.0076 26.5 7.7 45 102-146 54-100 (323)
205 PRK06205 acetyl-CoA acetyltran 23.2 1.9E+02 0.004 29.2 6.0 42 104-145 30-73 (404)
206 TIGR03286 methan_mark_15 putat 22.9 1.6E+02 0.0034 29.8 5.2 59 101-168 178-236 (404)
207 cd00834 KAS_I_II Beta-ketoacyl 22.9 3.6E+02 0.0078 26.7 8.1 38 86-124 58-95 (406)
208 TIGR00329 gcp_kae1 metallohydr 22.8 1.2E+02 0.0026 29.2 4.4 25 121-145 258-282 (305)
209 cd06155 eu_AANH_C_1 A group of 22.7 1.7E+02 0.0036 23.0 4.5 45 101-146 28-74 (101)
210 PRK08170 acetyl-CoA acetyltran 22.6 2E+02 0.0042 29.3 6.1 41 104-145 31-74 (426)
211 PRK09352 3-oxoacyl-(acyl carri 22.5 88 0.0019 30.0 3.4 44 99-145 216-259 (319)
212 PRK00180 acetate kinase A/prop 22.5 2E+02 0.0043 29.1 5.9 26 120-145 322-348 (402)
213 COG5418 Predicted secreted pro 22.4 1.5E+02 0.0032 25.3 4.2 41 86-129 63-104 (164)
214 TIGR03723 bact_gcp putative gl 22.4 1.3E+02 0.0028 29.2 4.5 65 96-162 45-115 (314)
215 PRK06445 acetyl-CoA acetyltran 22.3 2E+02 0.0043 28.8 6.0 24 104-127 36-59 (394)
216 cd02185 AroH Chorismate mutase 22.1 1.2E+02 0.0025 25.0 3.4 31 98-128 16-46 (117)
217 cd01741 GATase1_1 Subgroup of 22.1 1.2E+02 0.0026 26.6 4.0 50 118-173 43-100 (188)
218 COG4755 Uncharacterized protei 22.1 4.7E+02 0.01 21.9 10.0 16 330-345 58-73 (151)
219 cd00828 elong_cond_enzymes "el 21.7 2E+02 0.0042 28.7 5.9 46 102-147 274-321 (407)
220 cd06151 YjgF_YER057c_UK114_lik 21.7 2.4E+02 0.0052 23.1 5.4 52 92-147 38-96 (126)
221 TIGR02338 gimC_beta prefoldin, 21.5 4.3E+02 0.0092 21.1 10.6 46 325-374 61-106 (110)
222 TIGR01796 CM_mono_aroH monofun 21.3 1.2E+02 0.0027 24.8 3.4 31 98-128 16-46 (117)
223 PTZ00050 3-oxoacyl-acyl carrie 21.1 1.3E+02 0.0027 30.5 4.3 45 103-147 284-331 (421)
224 TIGR02698 CopY_TcrY copper tra 21.1 4.5E+02 0.0097 21.8 7.0 66 55-122 33-107 (130)
225 PRK09604 UGMP family protein; 20.9 1.8E+02 0.0039 28.5 5.2 64 97-162 48-117 (332)
226 cd06154 YjgF_YER057c_UK114_lik 20.9 1.8E+02 0.004 23.5 4.5 52 91-147 40-93 (119)
227 PLN02836 3-oxoacyl-[acyl-carri 20.8 1.5E+02 0.0032 30.2 4.8 44 104-147 301-346 (437)
228 CHL00203 fabH 3-oxoacyl-acyl-c 20.4 2.2E+02 0.0048 27.4 5.8 42 101-145 225-266 (326)
229 PLN02932 3-ketoacyl-CoA syntha 20.3 3E+02 0.0065 28.6 6.8 54 93-146 141-195 (478)
230 PRK06501 3-oxoacyl-(acyl carri 20.2 1.5E+02 0.0033 30.0 4.8 44 103-146 290-335 (425)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-80 Score=584.10 Aligned_cols=374 Identities=63% Similarity=1.033 Sum_probs=360.5
Q ss_pred CcccchhHHHHHHhcccCCC-CC------------------------eEEEecCCCCCchHHHHHHHHHHHHHHHHhhcc
Q 041209 1 MRIINEPTAAAIAYGLDNKA-SR------------------------TVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHK 55 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~-~~------------------------~Vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~ 55 (412)
+|+||||||||++|++++.. ++ +|+++.||.+|||.|||.++++||.+-|+++++
T Consensus 203 ~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~~fiklykkK~g 282 (663)
T KOG0100|consen 203 VRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEYFIKLYKKKHG 282 (663)
T ss_pred EEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHHHHHHHHhhhcC
Confidence 58999999999999999875 33 999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHhhc--------------ceEEeeecccCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 041209 56 KDISGNARALRRLQT--------------TTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQ 121 (412)
Q Consensus 56 ~~~~~~~~~~~~l~~--------------~~i~i~~~~~~~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~~~~ 121 (412)
.+++.+.+++.+|++ +.+.+++++++.+|+-++||..||++.-+++.++..+++++|+++++.+.+
T Consensus 283 kDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl~Ds~lkKsd 362 (663)
T KOG0100|consen 283 KDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVLEDSDLKKSD 362 (663)
T ss_pred CccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHHHHhhcCccccc
Confidence 999999999999987 678999999999999999999999999999999999999999999999999
Q ss_pred cceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhCCCCccccceEEEeccCccccccccC---
Q 041209 122 VHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNKKVQDLLLLDVTPLSLGIETAG--- 198 (412)
Q Consensus 122 id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~~~~~~~~~~~~~dv~~~s~gi~~~~--- 198 (412)
||.|+|||||+|||.||++|+.+|+|+++...+|||||||+|||.+|+.+||. ....++++.|++|+++||++.|
T Consensus 363 ideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGe--e~t~divLLDv~pLtlGIETvGGVM 440 (663)
T KOG0100|consen 363 IDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGE--EDTGDIVLLDVNPLTLGIETVGGVM 440 (663)
T ss_pred CceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccc--cCcCcEEEEeeccccceeeeeccee
Confidence 99999999999999999999999999999999999999999999999999964 4578999999999999999876
Q ss_pred ----------------------CCCCeEEEEEeecccccccCCceeeEEEEeCCCCCCCCCCeEEEEEEecCceeEEEEE
Q 041209 199 ----------------------DNRPSVLIQVYEGERARTKDNNLLGKFELKGIPPAPRGVPQINVCFDIDANGILHVSA 256 (412)
Q Consensus 199 ----------------------d~q~~i~i~i~eG~~~~~~~n~~l~~~~l~~i~~~~~g~~~i~v~f~id~~g~l~v~a 256 (412)
|+|+.+.|.||+|++...++|+.||.|.+.||||+|+|+|+|+|+|++|.||+|+|+|
T Consensus 441 TklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtFevDangiL~VsA 520 (663)
T KOG0100|consen 441 TKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFEVDANGILQVSA 520 (663)
T ss_pred eccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEEEEEEccCceEEEEe
Confidence 8999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCC----ceeecCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHhhhhhcch-hhhhcCCCHHhHHH
Q 041209 257 KDKTAG----ITITNDKGRLSKEEIERMVQEAEKYKAEDEEIKKKVEAKNSLENYAYNMSNTVRD-EKFAGKLDPADKQK 331 (412)
Q Consensus 257 ~~~~t~----i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~lE~~i~~~r~~l~~-~~~~~~~~~~e~~~ 331 (412)
.++.++ |+|+|++++||.|+|++|...+++|.++|+...++.++||+||+|.|.+++.+.+ +++...+++++++.
T Consensus 521 eDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekLg~Kl~~edKe~ 600 (663)
T KOG0100|consen 521 EDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGKLSDEDKET 600 (663)
T ss_pred eccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhcccCChhHHHH
Confidence 999887 9999999999999999999999999999999999999999999999999999987 67889999999999
Q ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHhcC
Q 041209 332 IEKAIDEAIEWLDGNQLVEVDELEDKLKELKGFCNPIIAKMYEGG 376 (412)
Q Consensus 332 i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r~~e~~ 376 (412)
+..++++..+||++|++++.++|++++++|+..++||..+++..+
T Consensus 601 ~e~av~e~~eWL~~n~~a~~Ee~~ek~kele~vv~PiisklY~~a 645 (663)
T KOG0100|consen 601 IEDAVEEALEWLESNQDASKEEFKEKKKELEAVVQPIISKLYGGA 645 (663)
T ss_pred HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999754
No 2
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=7.7e-73 Score=596.81 Aligned_cols=411 Identities=71% Similarity=1.090 Sum_probs=369.3
Q ss_pred CcccchhHHHHHHhcccCCC--CC------------------------eEEEecCCCCCchHHHHHHHHHHHHHHHHhhc
Q 041209 1 MRIINEPTAAAIAYGLDNKA--SR------------------------TVKATAGDTHLGGEDFDNRLVNHFVAEFKRKH 54 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~--~~------------------------~Vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~ 54 (412)
++||+||||||++|+..+.. ++ +|+++.||.+|||+|||.+|++|+.++|..++
T Consensus 171 ~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~ 250 (653)
T PTZ00009 171 LRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKN 250 (653)
T ss_pred eEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhc
Confidence 47999999999999986532 11 78999999999999999999999999998876
Q ss_pred c-CCCcccHHHHHHhhc--------------ceEEeeecccCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 041209 55 K-KDISGNARALRRLQT--------------TTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDK 119 (412)
Q Consensus 55 ~-~~~~~~~~~~~~l~~--------------~~i~i~~~~~~~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~~ 119 (412)
. .++..+++++.+|+. +.+.++.++++.+++++|||++||++|+|+++++..+++++|+++++++
T Consensus 251 ~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~ 330 (653)
T PTZ00009 251 RGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDK 330 (653)
T ss_pred cCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3 677777777777665 5667778888899999999999999999999999999999999999999
Q ss_pred CccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhCCCCccccceEEEeccCccccccccC-
Q 041209 120 SQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNKKVQDLLLLDVTPLSLGIETAG- 198 (412)
Q Consensus 120 ~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~~~~~~~~~~~~~dv~~~s~gi~~~~- 198 (412)
.+|+.|+||||+||||+|+++|+++|++..+..++|||+|||+|||++|+++++...++++++.++|++|++||+++.+
T Consensus 331 ~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p~slgi~~~~~ 410 (653)
T PTZ00009 331 RSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGG 410 (653)
T ss_pred HHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEeecccccCccccCC
Confidence 9999999999999999999999999976788899999999999999999999965457788999999999999998653
Q ss_pred ------------------------CCCCeEEEEEeecccccccCCceeeEEEEeCCCCCCCCCCeEEEEEEecCceeEEE
Q 041209 199 ------------------------DNRPSVLIQVYEGERARTKDNNLLGKFELKGIPPAPRGVPQINVCFDIDANGILHV 254 (412)
Q Consensus 199 ------------------------d~q~~i~i~i~eG~~~~~~~n~~l~~~~l~~i~~~~~g~~~i~v~f~id~~g~l~v 254 (412)
++|+.+.|.||||++....+|..||+|.+.++|+.++|.++|+|+|++|.||+|+|
T Consensus 411 ~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gil~v 490 (653)
T PTZ00009 411 VMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFDIDANGILNV 490 (653)
T ss_pred ceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceEEEEEEECCCCeEEE
Confidence 78999999999999999999999999999999999999989999999999999999
Q ss_pred EEEeccCC----ceeecCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHhhhhhcchhhhhcCCCHHhHH
Q 041209 255 SAKDKTAG----ITITNDKGRLSKEEIERMVQEAEKYKAEDEEIKKKVEAKNSLENYAYNMSNTVRDEKFAGKLDPADKQ 330 (412)
Q Consensus 255 ~a~~~~t~----i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~lE~~i~~~r~~l~~~~~~~~~~~~e~~ 330 (412)
++.+..++ +++.+...+|+.++++++++++.++..+|+..+++.+++|+||+|||.+|+.|++.++..++++++++
T Consensus 491 ~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~~~~~~~t~ee~~ 570 (653)
T PTZ00009 491 SAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKA 570 (653)
T ss_pred EEecccCCceeeEEEeeccccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhccCCHHHHH
Confidence 99988877 55655557799999999999999999999999999999999999999999999765688999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCc
Q 041209 331 KIEKAIDEAIEWLDGNQLVEVDELEDKLKELKGFCNPIIAKMYEGGASGDVPMGGGAEMPGGGHG--KAETGGASGGPKI 408 (412)
Q Consensus 331 ~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 408 (412)
.+.+.++++++||+++++++.++|++++++|++.++|+..|++..+. ||||+||||++|||-|| +||+++|++||+|
T Consensus 571 ~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~pi~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (653)
T PTZ00009 571 TIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMYQAAG-GGMPGGMPGGMPGGMPGGAGPAGAGASSGPTV 649 (653)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Confidence 99999999999999988899999999999999999999999987665 68888888888864333 3444455779999
Q ss_pred ccCC
Q 041209 409 EEVD 412 (412)
Q Consensus 409 ~~~~ 412 (412)
||||
T Consensus 650 ~~~~ 653 (653)
T PTZ00009 650 EEVD 653 (653)
T ss_pred ccCC
Confidence 9998
No 3
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-63 Score=497.43 Aligned_cols=372 Identities=77% Similarity=1.148 Sum_probs=354.3
Q ss_pred CcccchhHHHHHHhcccCCCC--C------------------------eEEEecCCCCCchHHHHHHHHHHHHHHHHhhc
Q 041209 1 MRIINEPTAAAIAYGLDNKAS--R------------------------TVKATAGDTHLGGEDFDNRLVNHFVAEFKRKH 54 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~~--~------------------------~Vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~ 54 (412)
+|+|+|||||||+|+++++.. . .|+++.||.+|||.|||+.|++|+...|+.++
T Consensus 174 lrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~~h~~~ef~~k~ 253 (620)
T KOG0101|consen 174 LRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVNHFAAEFKRKA 253 (620)
T ss_pred eeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHHHHHHHHHHHhh
Confidence 589999999999999877521 1 78899999999999999999999999999999
Q ss_pred cCCCcccHHHHHHhhc--------------ceEEeeecccCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 041209 55 KKDISGNARALRRLQT--------------TTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKS 120 (412)
Q Consensus 55 ~~~~~~~~~~~~~l~~--------------~~i~i~~~~~~~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~~~ 120 (412)
+.++..+++++.||+. +++.+++++++.++...|||.+||.+|.+++.++..++.++|+++.+++.
T Consensus 254 ~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~v~~~L~da~~dk~ 333 (620)
T KOG0101|consen 254 GKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEKALKDAKLDKS 333 (620)
T ss_pred ccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHHHHHHHHhhccCcc
Confidence 9999999999999988 67888999999999999999999999999999999999999999999999
Q ss_pred ccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhCCCCccccceEEEeccCccccccccC--
Q 041209 121 QVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNKKVQDLLLLDVTPLSLGIETAG-- 198 (412)
Q Consensus 121 ~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~~~~~~~~~~~~~dv~~~s~gi~~~~-- 198 (412)
+|+.|+|||||||+|.||..++++|+++.+..++|||++||+|||++|+.+++.....+.++.+.|+.|+++||++.+
T Consensus 334 ~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~~pl~~gve~a~~~ 413 (620)
T KOG0101|consen 334 DIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVAPLSLGVETAGGV 413 (620)
T ss_pred CCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeecccccccccccCCc
Confidence 999999999999999999999999999999999999999999999999999987666678999999999999999865
Q ss_pred -----------------------CCCCeEEEEEeecccccccCCceeeEEEEeCCCCCCCCCCeEEEEEEecCceeEEEE
Q 041209 199 -----------------------DNRPSVLIQVYEGERARTKDNNLLGKFELKGIPPAPRGVPQINVCFDIDANGILHVS 255 (412)
Q Consensus 199 -----------------------d~q~~i~i~i~eG~~~~~~~n~~l~~~~l~~i~~~~~g~~~i~v~f~id~~g~l~v~ 255 (412)
|+|+.+.|.||+|++..+++|.++|.|.+.||||+|+|+++|+++|.+|.||+|.|+
T Consensus 414 ~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~IevtfdiD~ngiL~Vt 493 (620)
T KOG0101|consen 414 FTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVT 493 (620)
T ss_pred ceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcceeEEEecCCCcEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCC----ceeecCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHhhhhhcchhhhhcCCCHHhHHH
Q 041209 256 AKDKTAG----ITITNDKGRLSKEEIERMVQEAEKYKAEDEEIKKKVEAKNSLENYAYNMSNTVRDEKFAGKLDPADKQK 331 (412)
Q Consensus 256 a~~~~t~----i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~lE~~i~~~r~~l~~~~~~~~~~~~e~~~ 331 (412)
+.+++++ ++|++..++||.++|+++....+.+..+|...+.+.+++|.||+|+|.++..+++.. ..++++++.+
T Consensus 494 a~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~~~--~~i~~~~~~~ 571 (620)
T KOG0101|consen 494 AVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVEDEK--GKINEEDKQK 571 (620)
T ss_pred eccccCCccceEEEecccceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhhhc--cccChhhhhh
Confidence 9999998 789999999999999999999999999999999999999999999999999998743 7899999999
Q ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHh
Q 041209 332 IEKAIDEAIEWLDGNQLVEVDELEDKLKELKGFCNPIIAKMYE 374 (412)
Q Consensus 332 i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r~~e 374 (412)
+...+++...||+.++.+..++|++|.++|+..+.||+.+++.
T Consensus 572 ~~~~~~~~i~wl~~~~~~~~~e~e~k~~el~~~~~p~~~~~~~ 614 (620)
T KOG0101|consen 572 ILDKCNEVINWLDKNQLAEKEEFEHKQKELELVCNPIISKLYQ 614 (620)
T ss_pred HHHHHHHHHHHhhhcccccccHHHHHHHHHHhhccHHHHhhhc
Confidence 9999999999999998888999999999999999999999885
No 4
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=2.9e-61 Score=508.94 Aligned_cols=366 Identities=47% Similarity=0.765 Sum_probs=332.0
Q ss_pred CcccchhHHHHHHhcccCCCCC------------------------eEEEecCCCCCchHHHHHHHHHHHHHHHHhhccC
Q 041209 1 MRIINEPTAAAIAYGLDNKASR------------------------TVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHKK 56 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~~~------------------------~Vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~ 56 (412)
++||+|||||||+|+.....+. +|+++.||.+|||+|||+.|++|+.++|..+++.
T Consensus 203 ~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~~f~~~~~~ 282 (673)
T PLN03184 203 LRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGI 282 (673)
T ss_pred EEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHHHHHhhcCC
Confidence 4799999999999998764322 7899999999999999999999999999999888
Q ss_pred CCcccHHHHHHhhc--------------ceEEeeeccc----CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 041209 57 DISGNARALRRLQT--------------TTIEIDSLYE----GIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKID 118 (412)
Q Consensus 57 ~~~~~~~~~~~l~~--------------~~i~i~~~~~----~~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~ 118 (412)
++..+++++.+|+. +.+.++.+.. +.++.++|||++||++|+|+++++..+|+++|+++++.
T Consensus 283 d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i~~~L~~a~~~ 362 (673)
T PLN03184 283 DLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPVENALRDAKLS 362 (673)
T ss_pred CcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88878877777665 4556655432 35788999999999999999999999999999999999
Q ss_pred CCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhCCCCccccceEEEeccCccccccccC
Q 041209 119 KSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNKKVQDLLLLDVTPLSLGIETAG 198 (412)
Q Consensus 119 ~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~~~~~~~~~~~~~dv~~~s~gi~~~~ 198 (412)
+++|+.|+||||+||||+|++.|+++| +..+..++|||+|||+|||++|+++++. ++++.++|++|++|||++.+
T Consensus 363 ~~dId~ViLvGGssriP~V~~~i~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~----~~~~~~~dv~p~slgi~~~~ 437 (673)
T PLN03184 363 FKDIDEVILVGGSTRIPAVQELVKKLT-GKDPNVTVNPDEVVALGAAVQAGVLAGE----VSDIVLLDVTPLSLGLETLG 437 (673)
T ss_pred hhHccEEEEECCccccHHHHHHHHHHh-CCCcccccCcchHHHHHHHHHHHHhccC----ccceEEEecccccceEEecC
Confidence 999999999999999999999999999 6778889999999999999999999853 67899999999999998764
Q ss_pred -------------------------CCCCeEEEEEeecccccccCCceeeEEEEeCCCCCCCCCCeEEEEEEecCceeEE
Q 041209 199 -------------------------DNRPSVLIQVYEGERARTKDNNLLGKFELKGIPPAPRGVPQINVCFDIDANGILH 253 (412)
Q Consensus 199 -------------------------d~q~~i~i~i~eG~~~~~~~n~~l~~~~l~~i~~~~~g~~~i~v~f~id~~g~l~ 253 (412)
|+|..+.|.||||++....+|..||+|.|.++|+.|+|.++|+|+|.+|.||+|+
T Consensus 438 ~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~GiL~ 517 (673)
T PLN03184 438 GVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILS 517 (673)
T ss_pred CeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceEEEEEEeCCCCeEE
Confidence 7899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCC----ceeecCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHhhhhhcchhhhhcCCCHHhH
Q 041209 254 VSAKDKTAG----ITITNDKGRLSKEEIERMVQEAEKYKAEDEEIKKKVEAKNSLENYAYNMSNTVRDEKFAGKLDPADK 329 (412)
Q Consensus 254 v~a~~~~t~----i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~lE~~i~~~r~~l~~~~~~~~~~~~e~ 329 (412)
|++.+..++ +++... .+|+.++++++++++.++..+|+..+++.+++|+||+|+|.+|+.|.+ +..+++++++
T Consensus 518 V~a~~~~t~~~~~~~i~~~-~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~e--~~~~~~~eer 594 (673)
T PLN03184 518 VSATDKGTGKKQDITITGA-STLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLKE--LGDKVPADVK 594 (673)
T ss_pred EEEEecCCCeEEEEEeccc-ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHH--HhhhCCHHHH
Confidence 999998877 555543 569999999999999999999999999999999999999999999964 8889999999
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHhcCC
Q 041209 330 QKIEKAIDEAIEWLDGNQLVEVDELEDKLKELKGFCNPIIAKMYEGGA 377 (412)
Q Consensus 330 ~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r~~e~~~ 377 (412)
+.+.+.++++++||+.+ +.+++++++++|.+.+.++..+++.+++
T Consensus 595 ~~l~~~l~~~e~wL~~~---d~~~ik~~~~~l~~~l~~l~~~~~~~~~ 639 (673)
T PLN03184 595 EKVEAKLKELKDAIASG---STQKMKDAMAALNQEVMQIGQSLYNQPG 639 (673)
T ss_pred HHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999975 6789999999999999999999887664
No 5
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.3e-61 Score=511.00 Aligned_cols=368 Identities=50% Similarity=0.778 Sum_probs=334.1
Q ss_pred CcccchhHHHHHHhcccCCC-CC------------------------eEEEecCCCCCchHHHHHHHHHHHHHHHHhhcc
Q 041209 1 MRIINEPTAAAIAYGLDNKA-SR------------------------TVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHK 55 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~-~~------------------------~Vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~ 55 (412)
++||+||||||++|++.... +. +|+++.||.+|||+|||.+|++|+.++|..+++
T Consensus 164 ~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~~~f~~~~~ 243 (653)
T PRK13411 164 LRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQQQEG 243 (653)
T ss_pred EEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHHHHHHHhhC
Confidence 47999999999999986532 11 899999999999999999999999999999888
Q ss_pred CCCcccHHHHHHhhc--------------ceEEeeeccc----CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 041209 56 KDISGNARALRRLQT--------------TTIEIDSLYE----GIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKI 117 (412)
Q Consensus 56 ~~~~~~~~~~~~l~~--------------~~i~i~~~~~----~~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~ 117 (412)
+++..+++++.+|+. +.+.++.+.. +.++.+.|||++||++|+|+++++..+++++|+++++
T Consensus 244 ~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~ 323 (653)
T PRK13411 244 IDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDAGL 323 (653)
T ss_pred CCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 888888877777755 4455665543 2578899999999999999999999999999999999
Q ss_pred CCCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhCCCCccccceEEEeccCcccccccc
Q 041209 118 DKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNKKVQDLLLLDVTPLSLGIETA 197 (412)
Q Consensus 118 ~~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~~~~~~~~~~~~~dv~~~s~gi~~~ 197 (412)
.+++|+.|+||||+||||+|++.|++.|++..+..++|||+|||+|||++|+++++. ++++.+.|++|++||+++.
T Consensus 324 ~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~dv~p~slgi~~~ 399 (653)
T PRK13411 324 KPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLDVTPLSLGIETL 399 (653)
T ss_pred CHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC----ccceeeeecccceeeEEec
Confidence 999999999999999999999999999976788899999999999999999999853 6789999999999999875
Q ss_pred C-------------------------CCCCeEEEEEeecccccccCCceeeEEEEeCCCCCCCCCCeEEEEEEecCceeE
Q 041209 198 G-------------------------DNRPSVLIQVYEGERARTKDNNLLGKFELKGIPPAPRGVPQINVCFDIDANGIL 252 (412)
Q Consensus 198 ~-------------------------d~q~~i~i~i~eG~~~~~~~n~~l~~~~l~~i~~~~~g~~~i~v~f~id~~g~l 252 (412)
+ ++|+.+.|.||||++..+.+|..||+|.+.++|+.|+|.++|+|+|++|.||+|
T Consensus 400 ~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil 479 (653)
T PRK13411 400 GEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGIL 479 (653)
T ss_pred CCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEEEEEEECCCCeE
Confidence 4 789999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccCC----ceeecCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHhhhhhcchhhhhcCCCHHh
Q 041209 253 HVSAKDKTAG----ITITNDKGRLSKEEIERMVQEAEKYKAEDEEIKKKVEAKNSLENYAYNMSNTVRDEKFAGKLDPAD 328 (412)
Q Consensus 253 ~v~a~~~~t~----i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~lE~~i~~~r~~l~~~~~~~~~~~~e 328 (412)
+|++.+..++ +.+.+. ..|+.++++++++++.++..+|+..+++.+++|+||+|+|.+|+.|++ +..++++++
T Consensus 480 ~v~a~d~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~--~~~~~~~~e 556 (653)
T PRK13411 480 KVSAQDQGTGREQSIRITNT-GGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKE--NGELISEEL 556 (653)
T ss_pred EEEEeeccCCceEeeEEecc-ccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccCCHHH
Confidence 9999998877 455554 569999999999999999999999999999999999999999999975 678999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHhcC
Q 041209 329 KQKIEKAIDEAIEWLDGNQLVEVDELEDKLKELKGFCNPIIAKMYEGG 376 (412)
Q Consensus 329 ~~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r~~e~~ 376 (412)
++.+.+.++++++||+++ +++.++|++++++|++.+.++..++++++
T Consensus 557 r~~i~~~l~~~~~wL~~~-~~~~~~~~~~~~el~~~~~~i~~~~y~~~ 603 (653)
T PRK13411 557 KQRAEQKVEQLEAALTDP-NISLEELKQQLEEFQQALLAIGAEVYQQG 603 (653)
T ss_pred HHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999983 46899999999999999999999998755
No 6
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=5.2e-61 Score=503.58 Aligned_cols=366 Identities=42% Similarity=0.708 Sum_probs=330.1
Q ss_pred CcccchhHHHHHHhcccCCCCC------------------------eEEEecCCCCCchHHHHHHHHHHHHHHHHhhccC
Q 041209 1 MRIINEPTAAAIAYGLDNKASR------------------------TVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHKK 56 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~~~------------------------~Vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~ 56 (412)
++|||||||||++|+.....++ +|+++.||.+|||+|||.+|++|+.++|..+++.
T Consensus 191 ~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~f~~~~~~ 270 (657)
T PTZ00186 191 IRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEEFRKTSGI 270 (657)
T ss_pred EEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHHHHhhhcCC
Confidence 4799999999999998764322 8999999999999999999999999999999998
Q ss_pred CCcccHHHHHHhhc--------------ceEEeeecccC----ceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 041209 57 DISGNARALRRLQT--------------TTIEIDSLYEG----IDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKID 118 (412)
Q Consensus 57 ~~~~~~~~~~~l~~--------------~~i~i~~~~~~----~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~ 118 (412)
++..+++++.+|+. +.+.++.+..+ .++.++|||++||++|+|+++++..+++++|++++++
T Consensus 271 d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~~L~~a~~~ 350 (657)
T PTZ00186 271 DLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVE 350 (657)
T ss_pred CcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88777777777765 44556554432 4588999999999999999999999999999999999
Q ss_pred CCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhCCCCccccceEEEeccCccccccccC
Q 041209 119 KSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNKKVQDLLLLDVTPLSLGIETAG 198 (412)
Q Consensus 119 ~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~~~~~~~~~~~~~dv~~~s~gi~~~~ 198 (412)
+.+|+.|+|||||||||.|+++|+++| +.++..++|||+|||+|||++|+++++. ++++.+.|++|++|||++.+
T Consensus 351 ~~dId~VvLVGGssriP~V~~~l~~~f-g~~~~~~~nPdeaVA~GAAi~a~~l~~~----~~~~~l~Dv~p~slgie~~~ 425 (657)
T PTZ00186 351 LKEINDVVLVGGMTRMPKVVEEVKKFF-QKDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLDVTPLSLGIETLG 425 (657)
T ss_pred hhhCCEEEEECCcccChHHHHHHHHHh-CCCccccCCCchHHHHhHHHHHHHhccc----cCceEEEeeccccccceecC
Confidence 999999999999999999999999999 6677789999999999999999999853 57899999999999999764
Q ss_pred -------------------------CCCCeEEEEEeecccccccCCceeeEEEEeCCCCCCCCCCeEEEEEEecCceeEE
Q 041209 199 -------------------------DNRPSVLIQVYEGERARTKDNNLLGKFELKGIPPAPRGVPQINVCFDIDANGILH 253 (412)
Q Consensus 199 -------------------------d~q~~i~i~i~eG~~~~~~~n~~l~~~~l~~i~~~~~g~~~i~v~f~id~~g~l~ 253 (412)
|+|+.+.|+||||++..+.+|..||+|.+.|+||.|+|.++|+|+|++|.||+|+
T Consensus 426 g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD~nGiL~ 505 (657)
T PTZ00186 426 GVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGICH 505 (657)
T ss_pred CEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEEEEEEEcCCCEEE
Confidence 8999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCC----ceeecCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHhhhhhcchhhhhcCCCHHhH
Q 041209 254 VSAKDKTAG----ITITNDKGRLSKEEIERMVQEAEKYKAEDEEIKKKVEAKNSLENYAYNMSNTVRDEKFAGKLDPADK 329 (412)
Q Consensus 254 v~a~~~~t~----i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~lE~~i~~~r~~l~~~~~~~~~~~~e~ 329 (412)
|++.+..|+ ++|.+. ..|++++++++.++++++..+|...+++.+++|++|.+++.+++.++. . ..++++++
T Consensus 506 V~a~d~~tg~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~ 581 (657)
T PTZ00186 506 VTAKDKATGKTQNITITAN-GGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGE--W-KYVSDAEK 581 (657)
T ss_pred EEEEEccCCcEEEEEeccC-ccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh--h-ccCCHHHH
Confidence 999999998 566654 569999999999999999999999999999999999999999999965 2 46789999
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHhcC
Q 041209 330 QKIEKAIDEAIEWLDGNQLVEVDELEDKLKELKGFCNPIIAKMYEGG 376 (412)
Q Consensus 330 ~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r~~e~~ 376 (412)
..+...+..+++||.. .+.+.+.++.++++|++.+.++..+++..+
T Consensus 582 ~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 627 (657)
T PTZ00186 582 ENVKTLVAELRKAMEN-PNVAKDDLAAATDKLQKAVMECGRTEYQQA 627 (657)
T ss_pred HHHHHHHHHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999984 344679999999999999999999887544
No 7
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.2e-60 Score=502.70 Aligned_cols=368 Identities=44% Similarity=0.705 Sum_probs=330.0
Q ss_pred CcccchhHHHHHHhcccCCCCC------------------------eEEEecCCCCCchHHHHHHHHHHHHHHHHhhccC
Q 041209 1 MRIINEPTAAAIAYGLDNKASR------------------------TVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHKK 56 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~~~------------------------~Vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~ 56 (412)
++||+|||||||+|+.....+. +|+++.||.+|||+|||.+|++|+..+|..++++
T Consensus 166 ~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~~~f~~~~~~ 245 (668)
T PRK13410 166 ERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFLEKEGI 245 (668)
T ss_pred EEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHHHHHHhhhCC
Confidence 4799999999999998764322 8999999999999999999999999999998888
Q ss_pred CCcccHHHHHHhhc--------------ceEEeeecccC----ceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 041209 57 DISGNARALRRLQT--------------TTIEIDSLYEG----IDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKID 118 (412)
Q Consensus 57 ~~~~~~~~~~~l~~--------------~~i~i~~~~~~----~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~ 118 (412)
++..+++++.+|+. +.+.++.+..+ .++.++|||++||++|+|+++++..+|+++|+++++.
T Consensus 246 d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i~~~L~~ag~~ 325 (668)
T PRK13410 246 DLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALKDAGLS 325 (668)
T ss_pred CcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88777777777654 44566665432 4788999999999999999999999999999999999
Q ss_pred CCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhCCCCccccceEEEeccCccccccccC
Q 041209 119 KSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNKKVQDLLLLDVTPLSLGIETAG 198 (412)
Q Consensus 119 ~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~~~~~~~~~~~~~dv~~~s~gi~~~~ 198 (412)
+++|+.|+||||+||||+|++.|+++| +.++..++|||+|||+|||++|+++++. ++++.+.|++|+++|+++.+
T Consensus 326 ~~dId~VvLVGGssRiP~V~~~l~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~----~~~~~l~Dv~p~slgie~~~ 400 (668)
T PRK13410 326 PEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAGE----LKDLLLLDVTPLSLGLETIG 400 (668)
T ss_pred hhhCcEEEEECCccccHHHHHHHHHHc-CCCcccCCCCchHHHHhHHHHHHhhccc----ccceeEEeeccccccceecC
Confidence 999999999999999999999999999 6778899999999999999999999853 67899999999999998754
Q ss_pred -------------------------CCCCeEEEEEeecccccccCCceeeEEEEeCCCCCCCCCCeEEEEEEecCceeEE
Q 041209 199 -------------------------DNRPSVLIQVYEGERARTKDNNLLGKFELKGIPPAPRGVPQINVCFDIDANGILH 253 (412)
Q Consensus 199 -------------------------d~q~~i~i~i~eG~~~~~~~n~~l~~~~l~~i~~~~~g~~~i~v~f~id~~g~l~ 253 (412)
++|+.+.|+||||++....+|..||+|.|.++|+.|+|.++|+|+|++|.||+|+
T Consensus 401 g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~f~id~nGiL~ 480 (668)
T PRK13410 401 GVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGILQ 480 (668)
T ss_pred CeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEEEEEEECCCcEEE
Confidence 7899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCC----ceeecCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHhhhhhcch--hhhhcCCCHH
Q 041209 254 VSAKDKTAG----ITITNDKGRLSKEEIERMVQEAEKYKAEDEEIKKKVEAKNSLENYAYNMSNTVRD--EKFAGKLDPA 327 (412)
Q Consensus 254 v~a~~~~t~----i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~lE~~i~~~r~~l~~--~~~~~~~~~~ 327 (412)
|++.+..++ ++|... .+|+.++++++++++.++..+|+..+++.++||++|+|+|.+|+.|.+ ..|..+++++
T Consensus 481 V~a~d~~tg~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~ 559 (668)
T PRK13410 481 VSATDRTTGREQSVTIQGA-STLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAER 559 (668)
T ss_pred EEEEEcCCCceeeeeeccc-ccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHH
Confidence 999998877 555544 679999999999999999999999999999999999999999999965 3588999999
Q ss_pred hHHHHHHHHHHHHHHHcCC-CCcCHHHHHHHHHHHHHhHHHHHHHHHh
Q 041209 328 DKQKIEKAIDEAIEWLDGN-QLVEVDELEDKLKELKGFCNPIIAKMYE 374 (412)
Q Consensus 328 e~~~i~~~l~~~~~wl~~~-~~~~~~~~~~~~~~L~~~~~~i~~r~~e 374 (412)
+++.+...++++++||+++ .+...+.++...+.|..+..++..|+.|
T Consensus 560 ~~~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 607 (668)
T PRK13410 560 QRRAVESAMRDVQDSLEQDDDRELDLAVADLQEALYGLNREVRAEYKE 607 (668)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999975 3445567777778888888888888888
No 8
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=3.3e-60 Score=500.67 Aligned_cols=366 Identities=50% Similarity=0.832 Sum_probs=331.5
Q ss_pred CcccchhHHHHHHhcccCCCCC------------------------eEEEecCCCCCchHHHHHHHHHHHHHHHHhhccC
Q 041209 1 MRIINEPTAAAIAYGLDNKASR------------------------TVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHKK 56 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~~~------------------------~Vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~ 56 (412)
++||+||||||++|+.....++ +|+++.||.+|||+|||.+|++|+.++|+.+++.
T Consensus 205 ~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~ 284 (663)
T PTZ00400 205 LRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKKQQGI 284 (663)
T ss_pred EEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHHHHHHHhhhhcCC
Confidence 4799999999999998754322 7889999999999999999999999999998888
Q ss_pred CCcccHHHHHHhhc--------------ceEEeeecccC----ceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 041209 57 DISGNARALRRLQT--------------TTIEIDSLYEG----IDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKID 118 (412)
Q Consensus 57 ~~~~~~~~~~~l~~--------------~~i~i~~~~~~----~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~ 118 (412)
++..+++++.+|+. +.+.++.+..+ .++.++|||++||++|+|+++++..+++++|+++++.
T Consensus 285 ~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~~~L~~a~~~ 364 (663)
T PTZ00400 285 DLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKDAGVK 364 (663)
T ss_pred CcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88878777777765 34555555433 4788999999999999999999999999999999999
Q ss_pred CCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhCCCCccccceEEEeccCccccccccC
Q 041209 119 KSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNKKVQDLLLLDVTPLSLGIETAG 198 (412)
Q Consensus 119 ~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~~~~~~~~~~~~~dv~~~s~gi~~~~ 198 (412)
+++|+.|+||||+||||+|++.|+++| +.++..++|||+|||+|||++|+++++. .+++.+.|++|++||+++.+
T Consensus 365 ~~~i~~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~dv~p~slgi~~~~ 439 (663)
T PTZ00400 365 KDELNDVILVGGMTRMPKVSETVKKIF-GKEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLLLLDVTPLSLGIETLG 439 (663)
T ss_pred HHHCcEEEEECCccCChHHHHHHHHHh-CCCcccCCCCccceeeccHHHHHhhcCC----ccceEEEeccccceEEEecC
Confidence 999999999999999999999999999 6678889999999999999999999853 57899999999999998654
Q ss_pred -------------------------CCCCeEEEEEeecccccccCCceeeEEEEeCCCCCCCCCCeEEEEEEecCceeEE
Q 041209 199 -------------------------DNRPSVLIQVYEGERARTKDNNLLGKFELKGIPPAPRGVPQINVCFDIDANGILH 253 (412)
Q Consensus 199 -------------------------d~q~~i~i~i~eG~~~~~~~n~~l~~~~l~~i~~~~~g~~~i~v~f~id~~g~l~ 253 (412)
|+|+.+.|.||||++..+.+|..||+|.+.++|+.|+|.++|+|+|.+|.||+|+
T Consensus 440 g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gil~ 519 (663)
T PTZ00400 440 GVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIMN 519 (663)
T ss_pred CeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceEEEEEEECCCCCEE
Confidence 7899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCC----ceeecCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHhhhhhcchhhhhcCCCHHhH
Q 041209 254 VSAKDKTAG----ITITNDKGRLSKEEIERMVQEAEKYKAEDEEIKKKVEAKNSLENYAYNMSNTVRDEKFAGKLDPADK 329 (412)
Q Consensus 254 v~a~~~~t~----i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~lE~~i~~~r~~l~~~~~~~~~~~~e~ 329 (412)
|++.+..++ ++++.. .+|+.++++++++++.++..+|+..+++.++||+||+|+|.+|+.|.+ +...++++++
T Consensus 520 v~a~~~~~~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~e--~~~~~s~~er 596 (663)
T PTZ00400 520 ISAVDKSTGKKQEITIQSS-GGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLSD--LKDKISDADK 596 (663)
T ss_pred EEEEeccCCcEEEEEeecc-ccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhCCHHHH
Confidence 999988877 555544 569999999999999999999999999999999999999999999974 8889999999
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHhcCC
Q 041209 330 QKIEKAIDEAIEWLDGNQLVEVDELEDKLKELKGFCNPIIAKMYEGGA 377 (412)
Q Consensus 330 ~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r~~e~~~ 377 (412)
+.+.+.++++++||+++ +.++|++++++|++.+.++..++++.++
T Consensus 597 e~i~~~l~~~~~WL~~~---d~~~i~~k~~eL~~~l~~l~~k~y~~~~ 641 (663)
T PTZ00400 597 DELKQKITKLRSTLSSE---DVDSIKDKTKQLQEASWKISQQAYKQGN 641 (663)
T ss_pred HHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999975 6899999999999999999999876443
No 9
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=2e-59 Score=494.29 Aligned_cols=365 Identities=50% Similarity=0.812 Sum_probs=331.1
Q ss_pred CcccchhHHHHHHhcccCCCCC------------------------eEEEecCCCCCchHHHHHHHHHHHHHHHHhhccC
Q 041209 1 MRIINEPTAAAIAYGLDNKASR------------------------TVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHKK 56 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~~~------------------------~Vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~ 56 (412)
++||+||||||++|+.....+. +|+++.||.+|||++||.+|++|+.++|+.+++.
T Consensus 164 ~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~ 243 (627)
T PRK00290 164 LRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKENGI 243 (627)
T ss_pred EEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHHhhCC
Confidence 4799999999999998763221 8999999999999999999999999999999988
Q ss_pred CCcccHHHHHHhhc--------------ceEEeeeccc----CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 041209 57 DISGNARALRRLQT--------------TTIEIDSLYE----GIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKID 118 (412)
Q Consensus 57 ~~~~~~~~~~~l~~--------------~~i~i~~~~~----~~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~ 118 (412)
++..+++++.+|+. +.+.++.+.. +.++.++|||++|+++|+|+++++..+++++|+++++.
T Consensus 244 ~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~l~~a~~~ 323 (627)
T PRK00290 244 DLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDAGLS 323 (627)
T ss_pred CcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88878877777765 4455665543 25788999999999999999999999999999999999
Q ss_pred CCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhCCCCccccceEEEeccCccccccccC
Q 041209 119 KSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNKKVQDLLLLDVTPLSLGIETAG 198 (412)
Q Consensus 119 ~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~~~~~~~~~~~~~dv~~~s~gi~~~~ 198 (412)
+.+|+.|+||||+||||+|++.|+++| +.++..++||++|||+|||++|+.+++. ++++.++|++|++||+++.+
T Consensus 324 ~~~id~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeava~GAa~~aa~l~~~----~~~~~~~d~~~~slgi~~~~ 398 (627)
T PRK00290 324 VSDIDEVILVGGSTRMPAVQELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGIETLG 398 (627)
T ss_pred hhhCcEEEEECCcCCChHHHHHHHHHh-CCCCCcCcCChHHHHHhHHHHHHHhcCC----ccceeeeeccceEEEEEecC
Confidence 999999999999999999999999999 7788899999999999999999999853 67899999999999998754
Q ss_pred -------------------------CCCCeEEEEEeecccccccCCceeeEEEEeCCCCCCCCCCeEEEEEEecCceeEE
Q 041209 199 -------------------------DNRPSVLIQVYEGERARTKDNNLLGKFELKGIPPAPRGVPQINVCFDIDANGILH 253 (412)
Q Consensus 199 -------------------------d~q~~i~i~i~eG~~~~~~~n~~l~~~~l~~i~~~~~g~~~i~v~f~id~~g~l~ 253 (412)
++|+.+.|.||||++....+|..||+|.+.++|+.|+|.++|+|+|.+|.||+|+
T Consensus 399 ~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~gil~ 478 (627)
T PRK00290 399 GVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVH 478 (627)
T ss_pred CeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEEEEEEECCCceEE
Confidence 7899999999999999999999999999999999999998999999999999999
Q ss_pred EEEEeccCC----ceeecCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHhhhhhcchhhhhcCCCHHhH
Q 041209 254 VSAKDKTAG----ITITNDKGRLSKEEIERMVQEAEKYKAEDEEIKKKVEAKNSLENYAYNMSNTVRDEKFAGKLDPADK 329 (412)
Q Consensus 254 v~a~~~~t~----i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~lE~~i~~~r~~l~~~~~~~~~~~~e~ 329 (412)
|++.+..++ +++.+. .+|+.++++++++++.++...|+..+++.+++|+||+|+|.+|+.|+. +..+++++++
T Consensus 479 v~a~~~~~~~~~~~~i~~~-~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~~--~~~~~~~~e~ 555 (627)
T PRK00290 479 VSAKDKGTGKEQSITITAS-SGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLKE--LGDKVPADEK 555 (627)
T ss_pred EEEEEccCCceeEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCHHHH
Confidence 999998887 455544 569999999999999999999999999999999999999999999973 7789999999
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHhcC
Q 041209 330 QKIEKAIDEAIEWLDGNQLVEVDELEDKLKELKGFCNPIIAKMYEGG 376 (412)
Q Consensus 330 ~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r~~e~~ 376 (412)
+++.+.++++++||+++ +.++|++++++|++.++++..|+++.+
T Consensus 556 ~~i~~~l~~~~~wL~~~---~~~~i~~k~~~L~~~~~~~~~~~~~~~ 599 (627)
T PRK00290 556 EKIEAAIKELKEALKGE---DKEAIKAKTEELTQASQKLGEAMYQQA 599 (627)
T ss_pred HHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999975 789999999999999999999987633
No 10
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=1.1e-58 Score=487.53 Aligned_cols=363 Identities=51% Similarity=0.813 Sum_probs=329.1
Q ss_pred CcccchhHHHHHHhcccCCCCC------------------------eEEEecCCCCCchHHHHHHHHHHHHHHHHhhccC
Q 041209 1 MRIINEPTAAAIAYGLDNKASR------------------------TVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHKK 56 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~~~------------------------~Vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~ 56 (412)
++||+||+|||++|+.....+. +|+++.||.+|||+|||..|++|+.++|..+++.
T Consensus 166 ~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~ 245 (621)
T CHL00094 166 LRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKKEGI 245 (621)
T ss_pred EEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHHHHHHhCC
Confidence 4799999999999998754322 7899999999999999999999999999999998
Q ss_pred CCcccHHHHHHhhc--------------ceEEeeeccc----CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 041209 57 DISGNARALRRLQT--------------TTIEIDSLYE----GIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKID 118 (412)
Q Consensus 57 ~~~~~~~~~~~l~~--------------~~i~i~~~~~----~~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~ 118 (412)
++..+++++.+|+. +.+.++.+.. +.++.++|||++||++|+|+++++..+++++|+++++.
T Consensus 246 ~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~ 325 (621)
T CHL00094 246 DLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALKDAKLD 325 (621)
T ss_pred CcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88877777777655 3455555542 24688899999999999999999999999999999999
Q ss_pred CCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhCCCCccccceEEEeccCccccccccC
Q 041209 119 KSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNKKVQDLLLLDVTPLSLGIETAG 198 (412)
Q Consensus 119 ~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~~~~~~~~~~~~~dv~~~s~gi~~~~ 198 (412)
+.+|+.|+||||+||||.|++.|+++| +.++..++||++|||+|||++|+++++. .+++.+.|++|++||+++.+
T Consensus 326 ~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~~pdeava~GAA~~aa~ls~~----~~~~~~~d~~~~~lgi~~~~ 400 (621)
T CHL00094 326 KSDIDEVVLVGGSTRIPAIQELVKKLL-GKKPNQSVNPDEVVAIGAAVQAGVLAGE----VKDILLLDVTPLSLGVETLG 400 (621)
T ss_pred hhhCcEEEEECCccCChHHHHHHHHHh-CCCcCcCCCchhHHHhhhHHHHHHhcCC----ccceeeeeeeceeeeeeccC
Confidence 999999999999999999999999999 6778889999999999999999999853 57899999999999998654
Q ss_pred -------------------------CCCCeEEEEEeecccccccCCceeeEEEEeCCCCCCCCCCeEEEEEEecCceeEE
Q 041209 199 -------------------------DNRPSVLIQVYEGERARTKDNNLLGKFELKGIPPAPRGVPQINVCFDIDANGILH 253 (412)
Q Consensus 199 -------------------------d~q~~i~i~i~eG~~~~~~~n~~l~~~~l~~i~~~~~g~~~i~v~f~id~~g~l~ 253 (412)
++|..+.|.||||++..+.+|..||+|.+.++|+.++|.++|.|+|++|.||+|+
T Consensus 401 ~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v~f~id~~Gil~ 480 (621)
T CHL00094 401 GVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILS 480 (621)
T ss_pred CEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEEEEEECCCCeEE
Confidence 7899999999999999999999999999999999999998999999999999999
Q ss_pred EEEEeccCC----ceeecCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHhhhhhcchhhhhcCCCHHhH
Q 041209 254 VSAKDKTAG----ITITNDKGRLSKEEIERMVQEAEKYKAEDEEIKKKVEAKNSLENYAYNMSNTVRDEKFAGKLDPADK 329 (412)
Q Consensus 254 v~a~~~~t~----i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~lE~~i~~~r~~l~~~~~~~~~~~~e~ 329 (412)
|++.+..++ +++.+. .+|+.++++++++++.++..+|+..+++.+++|+||+|+|.+|+.++. +..+++++++
T Consensus 481 v~~~~~~t~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~~--~~~~~~~~~~ 557 (621)
T CHL00094 481 VTAKDKGTGKEQSITIQGA-STLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKE--LKDKISEEKK 557 (621)
T ss_pred EEEeeccCCceeeeeeccc-hhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHHH--HhccCCHHHH
Confidence 999998877 455543 569999999999999999999999999999999999999999999974 8889999999
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHh
Q 041209 330 QKIEKAIDEAIEWLDGNQLVEVDELEDKLKELKGFCNPIIAKMYE 374 (412)
Q Consensus 330 ~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r~~e 374 (412)
+.+.+.++++++||+++ +.+++++++++|++.++++..+++.
T Consensus 558 ~~~~~~l~~~~~wl~~~---~~~~~~~~~~~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 558 EKIENLIKKLRQALQND---NYESIKSLLEELQKALMEIGKEVYS 599 (621)
T ss_pred HHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999975 5689999999999999999999876
No 11
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=1.2e-58 Score=486.42 Aligned_cols=362 Identities=54% Similarity=0.847 Sum_probs=327.1
Q ss_pred CcccchhHHHHHHhcccCC-CCC------------------------eEEEecCCCCCchHHHHHHHHHHHHHHHHhhcc
Q 041209 1 MRIINEPTAAAIAYGLDNK-ASR------------------------TVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHK 55 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~-~~~------------------------~Vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~ 55 (412)
++||+||+|||++|+.... .+. +|+++.||.++||+|||+.|++|+.++|..+++
T Consensus 161 ~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~ 240 (595)
T TIGR02350 161 LRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKKEEG 240 (595)
T ss_pred EEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHHHHHHhhC
Confidence 4799999999999998652 211 889999999999999999999999999999998
Q ss_pred CCCcccHHHHHHhhc--------------ceEEeeeccc----CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 041209 56 KDISGNARALRRLQT--------------TTIEIDSLYE----GIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKI 117 (412)
Q Consensus 56 ~~~~~~~~~~~~l~~--------------~~i~i~~~~~----~~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~ 117 (412)
.++..+++++.+|+. +.+.++.+.. +.++.++|||++|+++|+|+++++..+++++|+++++
T Consensus 241 ~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~l~~a~~ 320 (595)
T TIGR02350 241 IDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAGL 320 (595)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 888877777777665 4455555543 2578899999999999999999999999999999999
Q ss_pred CCCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhCCCCccccceEEEeccCcccccccc
Q 041209 118 DKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNKKVQDLLLLDVTPLSLGIETA 197 (412)
Q Consensus 118 ~~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~~~~~~~~~~~~~dv~~~s~gi~~~ 197 (412)
++.+|+.|+||||+||||+|++.|+++| +.++..++||++|||+|||++|+.+++. ++++.++|++|++||+++.
T Consensus 321 ~~~~i~~V~LvGGssriP~v~~~i~~~f-~~~~~~~~~pdeava~GAa~~aa~l~~~----~~~~~~~d~~~~~igi~~~ 395 (595)
T TIGR02350 321 SASDIDEVILVGGSTRIPAVQELVKDFF-GKEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETL 395 (595)
T ss_pred CHhHCcEEEEECCcccChHHHHHHHHHh-CCcccCCcCcHHHHHHHHHHHHHHhcCC----cccceeeecccceeEEEec
Confidence 9999999999999999999999999999 5788899999999999999999999853 6789999999999999865
Q ss_pred C-------------------------CCCCeEEEEEeecccccccCCceeeEEEEeCCCCCCCCCCeEEEEEEecCceeE
Q 041209 198 G-------------------------DNRPSVLIQVYEGERARTKDNNLLGKFELKGIPPAPRGVPQINVCFDIDANGIL 252 (412)
Q Consensus 198 ~-------------------------d~q~~i~i~i~eG~~~~~~~n~~l~~~~l~~i~~~~~g~~~i~v~f~id~~g~l 252 (412)
+ |+|+.+.|.||||++....+|..||++.+.++|+.++|.++|+|+|++|.||+|
T Consensus 396 ~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~G~l 475 (595)
T TIGR02350 396 GGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGIL 475 (595)
T ss_pred CCceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEEEEEEcCCCeE
Confidence 3 789999999999999999999999999999999999999899999999999999
Q ss_pred EEEEEeccCC----ceeecCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHhhhhhcchhhhhcCCCHHh
Q 041209 253 HVSAKDKTAG----ITITNDKGRLSKEEIERMVQEAEKYKAEDEEIKKKVEAKNSLENYAYNMSNTVRDEKFAGKLDPAD 328 (412)
Q Consensus 253 ~v~a~~~~t~----i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~lE~~i~~~r~~l~~~~~~~~~~~~e 328 (412)
+|++.+..++ ++++.. .+|+.++++++++++.++...|+..+++.+++|+||+|||.+|+.|++ +..++++++
T Consensus 476 ~v~~~~~~~~~~~~~~i~~~-~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~--~~~~~~~~e 552 (595)
T TIGR02350 476 HVSAKDKGTGKEQSITITAS-SGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKE--AGDKLPAEE 552 (595)
T ss_pred EEEEEEccCCceEEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH--hhccCCHHH
Confidence 9999998877 455544 569999999999999999999999999999999999999999999974 678899999
Q ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHH
Q 041209 329 KQKIEKAIDEAIEWLDGNQLVEVDELEDKLKELKGFCNPIIAKMY 373 (412)
Q Consensus 329 ~~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r~~ 373 (412)
++++.+.++++++||+++ +..++++++++|++.++++..+++
T Consensus 553 ~~~l~~~l~~~~~wL~~~---d~~~i~~~~~~l~~~~~~~~~~~~ 594 (595)
T TIGR02350 553 KEKIEKAVAELKEALKGE---DVEEIKAKTEELQQALQKLAEAMY 594 (595)
T ss_pred HHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999976 778999999999999999998764
No 12
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=1e-56 Score=470.03 Aligned_cols=359 Identities=38% Similarity=0.617 Sum_probs=317.9
Q ss_pred CcccchhHHHHHHhcccCCCCC------------------------eEEEecCCCCCchHHHHHHHHHHHHHHHHhhccC
Q 041209 1 MRIINEPTAAAIAYGLDNKASR------------------------TVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHKK 56 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~~~------------------------~Vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~ 56 (412)
++||+||||||++|++....+. +|+++.||.+|||+|||.+|++|+.++++ .
T Consensus 160 ~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~~----~ 235 (599)
T TIGR01991 160 LRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLG----I 235 (599)
T ss_pred eEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhhC----C
Confidence 4799999999999998764322 89999999999999999999999997753 3
Q ss_pred CCcccHHHHHHhhc--------------ceEEeeecccCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 041209 57 DISGNARALRRLQT--------------TTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQV 122 (412)
Q Consensus 57 ~~~~~~~~~~~l~~--------------~~i~i~~~~~~~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~~~~i 122 (412)
+...+++.+.+|+. +.+.++ .++.++.++|||++|+++|+|+++++..+++++|+++++.+.+|
T Consensus 236 ~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~--~~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~~~~~~i 313 (599)
T TIGR01991 236 SADLNPEDQRLLLQAARAAKEALTDAESVEVDFT--LDGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEI 313 (599)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEE--ECCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhC
Confidence 33345555544433 233443 36789999999999999999999999999999999999999999
Q ss_pred ceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhCCCCccccceEEEeccCccccccccC----
Q 041209 123 HDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNKKVQDLLLLDVTPLSLGIETAG---- 198 (412)
Q Consensus 123 d~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~~~~~~~~~~~~~dv~~~s~gi~~~~---- 198 (412)
+.|+||||+||||+|++.|++.| +..+..++|||+|||+|||++|+.+++ .+..+++.+.|++|++||+++.+
T Consensus 314 d~ViLvGGssriP~V~~~l~~~f-~~~~~~~~npdeaVA~GAai~a~~l~~--~~~~~~~~l~dv~p~slgi~~~~g~~~ 390 (599)
T TIGR01991 314 KGVVLVGGSTRMPLVRRAVAELF-GQEPLTDIDPDQVVALGAAIQADLLAG--NRIGNDLLLLDVTPLSLGIETMGGLVE 390 (599)
T ss_pred CEEEEECCcCCChHHHHHHHHHh-CCCCCCCCCCcHHHHHHHHHHHHHhcc--ccccCceEEEEeeeeeeEEEecCCEEE
Confidence 99999999999999999999999 567778899999999999999999984 45567899999999999998764
Q ss_pred ---------------------CCCCeEEEEEeecccccccCCceeeEEEEeCCCCCCCCCCeEEEEEEecCceeEEEEEE
Q 041209 199 ---------------------DNRPSVLIQVYEGERARTKDNNLLGKFELKGIPPAPRGVPQINVCFDIDANGILHVSAK 257 (412)
Q Consensus 199 ---------------------d~q~~i~i~i~eG~~~~~~~n~~l~~~~l~~i~~~~~g~~~i~v~f~id~~g~l~v~a~ 257 (412)
|+|+.+.|.||||++..+.+|..||+|.|.++|+.|+|.++|+|+|++|.||+|+|++.
T Consensus 391 ~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~V~a~ 470 (599)
T TIGR01991 391 KIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTVSAQ 470 (599)
T ss_pred EEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECCCCeEEEEEE
Confidence 88999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCC----ceeecCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHhhhhhcchhhhhcCCCHHhHHHHH
Q 041209 258 DKTAG----ITITNDKGRLSKEEIERMVQEAEKYKAEDEEIKKKVEAKNSLENYAYNMSNTVRDEKFAGKLDPADKQKIE 333 (412)
Q Consensus 258 ~~~t~----i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~lE~~i~~~r~~l~~~~~~~~~~~~e~~~i~ 333 (412)
+..++ +.+.+. ..|++++++++.+++.++..+|...++..+++|++|+|+|.+++.+.. +..++++++++.+.
T Consensus 471 ~~~t~~~~~~~i~~~-~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 547 (599)
T TIGR01991 471 EQSTGVEQSIQVKPS-YGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAALAA--DGDLLSEDERAAID 547 (599)
T ss_pred ECCCCcEEEEecccc-cCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccCCHHHHHHHH
Confidence 99887 455544 559999999999999999999999999999999999999999999865 45688999999999
Q ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHh
Q 041209 334 KAIDEAIEWLDGNQLVEVDELEDKLKELKGFCNPIIAKMYE 374 (412)
Q Consensus 334 ~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r~~e 374 (412)
..++++++||+++ +.+.++++.++|++.+.++..+..+
T Consensus 548 ~~l~~~~~~l~~~---~~~~~~~~~~~l~~~~~~~~~~~~~ 585 (599)
T TIGR01991 548 AAMEALQKALQGD---DADAIKAAIEALEEATDNFAARRMD 585 (599)
T ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999975 6789999999999999999976654
No 13
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-58 Score=445.99 Aligned_cols=369 Identities=48% Similarity=0.768 Sum_probs=341.5
Q ss_pred CcccchhHHHHHHhcccCCCCC------------------------eEEEecCCCCCchHHHHHHHHHHHHHHHHhhccC
Q 041209 1 MRIINEPTAAAIAYGLDNKASR------------------------TVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHKK 56 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~~~------------------------~Vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~ 56 (412)
+|+|||||||||+|+++.+... +|.+|.||.+|||.|||..+++|+...|....++
T Consensus 191 lrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~~~v~~fk~~~gi 270 (640)
T KOG0102|consen 191 LRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVSEFKKEEGI 270 (640)
T ss_pred eccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHHHHHHhhhcccCc
Confidence 5899999999999999976522 9999999999999999999999999999999999
Q ss_pred CCcccHHHHHHhhc--------------ceEEeeecccC----ceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 041209 57 DISGNARALRRLQT--------------TTIEIDSLYEG----IDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKID 118 (412)
Q Consensus 57 ~~~~~~~~~~~l~~--------------~~i~i~~~~~~----~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~ 118 (412)
++..+.+++.|+++ +.+.++.+..+ ..+++++||.+||+++.++++|.+.+++++|++|++.
T Consensus 271 dl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~aL~dA~~~ 350 (640)
T KOG0102|consen 271 DLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKKALRDASLS 350 (640)
T ss_pred chhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHHHHHHhccCC
Confidence 99999999999988 44555555554 7899999999999999999999999999999999999
Q ss_pred CCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhCCCCccccceEEEeccCccccccccC
Q 041209 119 KSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNKKVQDLLLLDVTPLSLGIETAG 198 (412)
Q Consensus 119 ~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~~~~~~~~~~~~~dv~~~s~gi~~~~ 198 (412)
.+||+.|+||||++|||.|++.+++.| ++.+...+|||++||.|||++++.+++. ++++.+.||+|+++||++.+
T Consensus 351 ~~di~EV~lvggmtrmpkv~s~V~e~f-gk~p~~~vnPdeava~GAaiqggvl~ge----VkdvlLLdVtpLsLgietlg 425 (640)
T KOG0102|consen 351 SSDINEVILVGGMTRMPKVQSTVKELF-GKGPSKGVNPDEAVAGGAAIQGGVLSGE----VKDVLLLDVTPLSLGIETLG 425 (640)
T ss_pred hhhhhhhhhhcchhhcHHHHHHHHHHh-CCCCCCCcCCcchhccchhhccchhhcc----ccceeeeecchHHHHHHhhh
Confidence 999999999999999999999999999 8899999999999999999999999986 89999999999999999876
Q ss_pred -------------------------CCCCeEEEEEeecccccccCCceeeEEEEeCCCCCCCCCCeEEEEEEecCceeEE
Q 041209 199 -------------------------DNRPSVLIQVYEGERARTKDNNLLGKFELKGIPPAPRGVPQINVCFDIDANGILH 253 (412)
Q Consensus 199 -------------------------d~q~~i~i~i~eG~~~~~~~n~~l~~~~l~~i~~~~~g~~~i~v~f~id~~g~l~ 253 (412)
|+|+.+.|+||||++....+|+++|+|.+.||||+|+|.|+|+|+|.+|.||+++
T Consensus 426 gvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtfDIdanGI~~ 505 (640)
T KOG0102|consen 426 GVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDIDANGIGT 505 (640)
T ss_pred hhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCceeEEEeecCCceee
Confidence 8999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCC----ceeecCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHhhhhhcchhhhhcCCCHHhH
Q 041209 254 VSAKDKTAG----ITITNDKGRLSKEEIERMVQEAEKYKAEDEEIKKKVEAKNSLENYAYNMSNTVRDEKFAGKLDPADK 329 (412)
Q Consensus 254 v~a~~~~t~----i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~lE~~i~~~r~~l~~~~~~~~~~~~e~ 329 (412)
|+|.++.++ +++... +.||+.+++.+....+.+...|...+++.+..|..|++++.....+.. |.+.++.++.
T Consensus 506 vsA~dk~t~K~qsi~i~~s-ggLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~~--~~~~~~~~~~ 582 (640)
T KOG0102|consen 506 VSAKDKGTGKSQSITIASS-GGLSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLKE--FEEKIPAEEC 582 (640)
T ss_pred eehhhcccCCccceEEeec-CCCCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhhh--hhhhCcHHHH
Confidence 999999887 777776 559999999999999999999999999999999999999999999876 7778888888
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHhcCC
Q 041209 330 QKIEKAIDEAIEWLDGNQLVEVDELEDKLKELKGFCNPIIAKMYEGGA 377 (412)
Q Consensus 330 ~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r~~e~~~ 377 (412)
.++...+....+.+..-...+.+++..+...|++..-+++..++..++
T Consensus 583 ~~i~~~i~~l~~~~~~~~~~~~~~~k~~~~~l~q~~lkl~es~~k~~~ 630 (640)
T KOG0102|consen 583 EKLEEKISDLRELVANKDSGDMEEIKKAMSALQQASLKLFESAYKNMG 630 (640)
T ss_pred HHHHHHHHHHHHHHhhhccCChhhHHHHHHHHHHhhhHHHHHHHhhhc
Confidence 899999999999987533345589999999999999999999987665
No 14
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=6.9e-56 Score=464.68 Aligned_cols=358 Identities=37% Similarity=0.596 Sum_probs=312.1
Q ss_pred CcccchhHHHHHHhcccCCCCC------------------------eEEEecCCCCCchHHHHHHHHHHHHHHHHhhccC
Q 041209 1 MRIINEPTAAAIAYGLDNKASR------------------------TVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHKK 56 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~~~------------------------~Vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~ 56 (412)
++||+||||||++|++....+. +|+++.||.+|||+|||.+|++|+.++|+..
T Consensus 180 ~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~~~~~~--- 256 (616)
T PRK05183 180 LRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQAGLS--- 256 (616)
T ss_pred EEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHHHcCCC---
Confidence 4799999999999998764322 7899999999999999999999999887543
Q ss_pred CCcccHHHHHHhhc------------ceEEeeecccCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccce
Q 041209 57 DISGNARALRRLQT------------TTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHD 124 (412)
Q Consensus 57 ~~~~~~~~~~~l~~------------~~i~i~~~~~~~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~~~~id~ 124 (412)
...+++++.+|+. ....+.. . ++...|||++|+++|+|+++++..+++++|+++++.+++|+.
T Consensus 257 -~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i--~--~~~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ 331 (616)
T PRK05183 257 -PRLDPEDQRLLLDAARAAKEALSDADSVEVSV--A--LWQGEITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKE 331 (616)
T ss_pred -cCCCHHHHHHHHHHHHHHHHhcCCCceEEEEE--e--cCCCeEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCE
Confidence 2234555555544 1122221 1 122359999999999999999999999999999999999999
Q ss_pred EEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhCCCCccccceEEEeccCccccccccC------
Q 041209 125 VVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNKKVQDLLLLDVTPLSLGIETAG------ 198 (412)
Q Consensus 125 V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~~~~~~~~~~~~~dv~~~s~gi~~~~------ 198 (412)
|+||||+||||+|++.|+++| +..+..++|||+|||+|||++|+.+++ .+..+++.+.|++|++|||++.+
T Consensus 332 ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeaVA~GAAi~a~~l~~--~~~~~~~~l~dv~p~slgi~~~~g~~~~i 408 (616)
T PRK05183 332 VVMVGGSTRVPLVREAVGEFF-GRTPLTSIDPDKVVAIGAAIQADILAG--NKPDSDMLLLDVIPLSLGLETMGGLVEKI 408 (616)
T ss_pred EEEECCcccChHHHHHHHHHh-ccCcCcCCCchHHHHHHHHHHHHHhcc--ccccCceEEEeeccccccceecCCeEEEE
Confidence 999999999999999999999 566778899999999999999999984 34457899999999999998754
Q ss_pred -------------------CCCCeEEEEEeecccccccCCceeeEEEEeCCCCCCCCCCeEEEEEEecCceeEEEEEEec
Q 041209 199 -------------------DNRPSVLIQVYEGERARTKDNNLLGKFELKGIPPAPRGVPQINVCFDIDANGILHVSAKDK 259 (412)
Q Consensus 199 -------------------d~q~~i~i~i~eG~~~~~~~n~~l~~~~l~~i~~~~~g~~~i~v~f~id~~g~l~v~a~~~ 259 (412)
++|+.+.|.||||++..+.+|..||+|.+.|+|+.|+|.++|+|+|++|.||+|+|++.+.
T Consensus 409 i~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~~d~~Gil~V~a~~~ 488 (616)
T PRK05183 409 IPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGLLSVTAMEK 488 (616)
T ss_pred EeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEEEEECCCCeEEEEEEEc
Confidence 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC----ceeecCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHhhhhhcchhhhhcCCCHHhHHHHHHH
Q 041209 260 TAG----ITITNDKGRLSKEEIERMVQEAEKYKAEDEEIKKKVEAKNSLENYAYNMSNTVRDEKFAGKLDPADKQKIEKA 335 (412)
Q Consensus 260 ~t~----i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~lE~~i~~~r~~l~~~~~~~~~~~~e~~~i~~~ 335 (412)
.++ +.+.+. ..|++++++++++++.++..+|...+++.+++|++|+|+|.+++.+.+ ....+++++++.+...
T Consensus 489 ~~~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~ 565 (616)
T PRK05183 489 STGVEASIQVKPS-YGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQAALAA--DGDLLSAAERAAIDAA 565 (616)
T ss_pred CCCcEEEeccccc-ccCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--hhccCCHHHHHHHHHH
Confidence 887 455444 459999999999999999999999999999999999999999999965 3467899999999999
Q ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHhc
Q 041209 336 IDEAIEWLDGNQLVEVDELEDKLKELKGFCNPIIAKMYEG 375 (412)
Q Consensus 336 l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r~~e~ 375 (412)
++++++||..+ +.+.+++++++|++.+.++..+.++.
T Consensus 566 l~~~~~~l~~~---d~~~~~~~~~~l~~~~~~~~~~~~~~ 602 (616)
T PRK05183 566 MAALREVAQGD---DADAIEAAIKALDKATQEFAARRMDR 602 (616)
T ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999864 78899999999999999999866653
No 15
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=7.1e-55 Score=453.60 Aligned_cols=348 Identities=31% Similarity=0.498 Sum_probs=295.4
Q ss_pred CcccchhHHHHHHhcccCCCCC------------------------eEEEecCCCCCchHHHHHHHHHHHHHHHHhhccC
Q 041209 1 MRIINEPTAAAIAYGLDNKASR------------------------TVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHKK 56 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~~~------------------------~Vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~ 56 (412)
++||+||||||++|+.....+. +|+++.||.+|||+|||.+|++|+..+|....+.
T Consensus 172 ~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~~~~~~~~ 251 (595)
T PRK01433 172 LRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKFDLPNSI 251 (595)
T ss_pred EEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHhcCCCCCH
Confidence 4799999999999998764321 8999999999999999999999999887532221
Q ss_pred CCcccHHHHHHhhcceEEeeecccCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHH
Q 041209 57 DISGNARALRRLQTTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPK 136 (412)
Q Consensus 57 ~~~~~~~~~~~l~~~~i~i~~~~~~~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~ 136 (412)
. ..+.+.+.+. .++....-....++|||++||++|+|+++++..+++++|++++ +.+|+.|+||||+||||+
T Consensus 252 ~---~~~~~ekaK~---~LS~~~~~~~~~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~--~~~Id~ViLvGGssriP~ 323 (595)
T PRK01433 252 D---TLQLAKKAKE---TLTYKDSFNNDNISINKQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPL 323 (595)
T ss_pred H---HHHHHHHHHH---hcCCCcccccceEEEcHHHHHHHHHHHHHHHHHHHHHHHhhcC--cccCcEEEEECCcccChh
Confidence 1 1112233332 1110000001268999999999999999999999999999998 678999999999999999
Q ss_pred HHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhCCCCccccceEEEeccCccccccccC------------------
Q 041209 137 VQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNKKVQDLLLLDVTPLSLGIETAG------------------ 198 (412)
Q Consensus 137 V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~~~~~~~~~~~~~dv~~~s~gi~~~~------------------ 198 (412)
|++.|++.| +.++..++||++|||+|||++|+.+++. ..++.++|++|+++||++.+
T Consensus 324 v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~a~~l~~~----~~~~~l~Dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~ 398 (595)
T PRK01433 324 IKDELYKAF-KVDILSDIDPDKAVVWGAALQAENLIAP----HTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVV 398 (595)
T ss_pred HHHHHHHHh-CCCceecCCchHHHHHHHHHHHHHhhCC----ccceEEEEecccceEEEecCCEEEEEEECCCcccceee
Confidence 999999999 6778889999999999999999999853 35789999999999999865
Q ss_pred -------CCCCeEEEEEeecccccccCCceeeEEEEeCCCCCCCCCCeEEEEEEecCceeEEEEEEeccCC----ceeec
Q 041209 199 -------DNRPSVLIQVYEGERARTKDNNLLGKFELKGIPPAPRGVPQINVCFDIDANGILHVSAKDKTAG----ITITN 267 (412)
Q Consensus 199 -------d~q~~i~i~i~eG~~~~~~~n~~l~~~~l~~i~~~~~g~~~i~v~f~id~~g~l~v~a~~~~t~----i~i~~ 267 (412)
++|+.+.|.||||++..+.+|..||+|.+.|+|+.|+|.++|+|+|++|.||+|+|++.+..|+ +.|.+
T Consensus 399 ~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf~id~~Gil~V~a~~~~t~~~~~~~i~~ 478 (595)
T PRK01433 399 KEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGILSVSAYEKISNTSHAIEVKP 478 (595)
T ss_pred EEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEEEECCCCcEEEEEEEcCCCcEEEEEecC
Confidence 7899999999999999999999999999999999999999999999999999999999999988 55655
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHhhhhhcchhhhhcCCCHHhHHHHHHHHHHHHHHHcCCC
Q 041209 268 DKGRLSKEEIERMVQEAEKYKAEDEEIKKKVEAKNSLENYAYNMSNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQ 347 (412)
Q Consensus 268 ~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~lE~~i~~~r~~l~~~~~~~~~~~~e~~~i~~~l~~~~~wl~~~~ 347 (412)
. ..|+++++++++++++++..+|...++..+++|++|++++.+++.+++ +...+++++++.+...++++++||..+
T Consensus 479 ~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~i~~~~~~~~~~l~~~- 554 (595)
T PRK01433 479 N-HGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIAE--LTTLLSESEISIINSLLDNIKEAVHAR- 554 (595)
T ss_pred C-CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccCCHHHHHHHHHHHHHHHHHHhcC-
Confidence 4 459999999999999999999999999999999999999999999975 566789999999999999999999864
Q ss_pred CcCHHHHHHHHHHHHHhHHH
Q 041209 348 LVEVDELEDKLKELKGFCNP 367 (412)
Q Consensus 348 ~~~~~~~~~~~~~L~~~~~~ 367 (412)
+...+++.+++|++.+.+
T Consensus 555 --~~~~~~~~~~~~~~~~~~ 572 (595)
T PRK01433 555 --DIILINNSIKEFKSKIKK 572 (595)
T ss_pred --CHHHHHHHHHHHHHHHHH
Confidence 555666666666666666
No 16
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=4.2e-54 Score=454.20 Aligned_cols=365 Identities=46% Similarity=0.794 Sum_probs=323.3
Q ss_pred CcccchhHHHHHHhcccCCC-CC------------------------eEEEecCCCCCchHHHHHHHHHHHHHHHHhhcc
Q 041209 1 MRIINEPTAAAIAYGLDNKA-SR------------------------TVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHK 55 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~-~~------------------------~Vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~ 55 (412)
++||+||+|||++|++.+.. .. +|+++.|+..+||++||.+|++|+.++|+.+++
T Consensus 166 ~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~ 245 (602)
T PF00012_consen 166 LRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEKFKKKYK 245 (602)
T ss_dssp EEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHS
T ss_pred ceeecccccccccccccccccccceeccccccceEeeeehhcccccccccccccccccccceecceeecccccccccccc
Confidence 47999999999999987754 11 889999999999999999999999999999988
Q ss_pred CCCcccHHHHHHhhc----------------ceEEeeeccc-CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 041209 56 KDISGNARALRRLQT----------------TTIEIDSLYE-GIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKID 118 (412)
Q Consensus 56 ~~~~~~~~~~~~l~~----------------~~i~i~~~~~-~~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~ 118 (412)
.++..+++++.+|+. ..+.++.+.+ +.++.++|||++|+++++|+++++..+++++|++++++
T Consensus 246 ~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~ 325 (602)
T PF00012_consen 246 IDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIEKALKDAGLK 325 (602)
T ss_dssp S-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHTT--
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccccccccccccccccccccc
Confidence 888888887777765 2345666666 78999999999999999999999999999999999999
Q ss_pred CCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhCCCCccccceEEEeccCccccccccC
Q 041209 119 KSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNKKVQDLLLLDVTPLSLGIETAG 198 (412)
Q Consensus 119 ~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~~~~~~~~~~~~~dv~~~s~gi~~~~ 198 (412)
+++|+.|+||||+||+|+|++.|++.|+ ..+..++||++|||+|||++|+.++ ..++.+++.+.|++|++|||++.+
T Consensus 326 ~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~~~--~~~~~~~~~~~d~~~~~~~i~~~~ 402 (602)
T PF00012_consen 326 KEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPDEAVARGAALYAAILS--GSFRVKDIKIIDVTPFSIGIEVSN 402 (602)
T ss_dssp GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TTTHHHHHHHHHHHHHH--TSCSSTSSCESEBESSEEEEEETT
T ss_pred ccccceeEEecCcccchhhhhhhhhccc-cccccccccccccccccccchhhhc--cccccccccccccccccccccccc
Confidence 9999999999999999999999999995 7888999999999999999999998 456788999999999999998764
Q ss_pred -------------------------CCCCeEEEEEeecccccccCCceeeEEEEeCCCCCCCCCCeEEEEEEecCceeEE
Q 041209 199 -------------------------DNRPSVLIQVYEGERARTKDNNLLGKFELKGIPPAPRGVPQINVCFDIDANGILH 253 (412)
Q Consensus 199 -------------------------d~q~~i~i~i~eG~~~~~~~n~~l~~~~l~~i~~~~~g~~~i~v~f~id~~g~l~ 253 (412)
++|+.+.|.||+|+.....+|..||++.+.++++.++|.++|.|+|++|.+|+|+
T Consensus 403 ~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ld~~Gil~ 482 (602)
T PF00012_consen 403 GKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFELDENGILS 482 (602)
T ss_dssp TEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEEEETTSEEE
T ss_pred cccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccceeeEEeeeeeeehh
Confidence 7788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCC----ceeecCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHhhhhhcchhhhhcCCCHHhH
Q 041209 254 VSAKDKTAG----ITITNDKGRLSKEEIERMVQEAEKYKAEDEEIKKKVEAKNSLENYAYNMSNTVRDEKFAGKLDPADK 329 (412)
Q Consensus 254 v~a~~~~t~----i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~lE~~i~~~r~~l~~~~~~~~~~~~e~ 329 (412)
|++.+..++ +++..... ++.++++++++++.++...|+..+++.+++|+||+++|.+|+.+++. ..+++++++
T Consensus 483 V~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~--~~~~~~~~~ 559 (602)
T PF00012_consen 483 VEAAEVETGKEEEVTVKKKET-LSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEED--KDFVSEEEK 559 (602)
T ss_dssp EEEEETTTTEEEEEEEESSSS-SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--GGGSTHHHH
T ss_pred hhhcccccccccccccccccc-cccccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhh--hccCCHHHH
Confidence 999998776 45555544 89999999999999999999999999999999999999999999873 566766666
Q ss_pred HHHHHHHHHHHHHHcCC-CCcCHHHHHHHHHHHHHhHHHHHHHHHh
Q 041209 330 QKIEKAIDEAIEWLDGN-QLVEVDELEDKLKELKGFCNPIIAKMYE 374 (412)
Q Consensus 330 ~~i~~~l~~~~~wl~~~-~~~~~~~~~~~~~~L~~~~~~i~~r~~e 374 (412)
.+.+++..+||++. .+.+.++|++++++|++.++||..|+++
T Consensus 560 ---~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 560 ---KKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYMQ 602 (602)
T ss_dssp ---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88899999999975 5678999999999999999999999873
No 17
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-53 Score=437.54 Aligned_cols=361 Identities=54% Similarity=0.856 Sum_probs=333.3
Q ss_pred CcccchhHHHHHHhcccCCCCC------------------------eEEEecCCCCCchHHHHHHHHHHHHHHHHhhccC
Q 041209 1 MRIINEPTAAAIAYGLDNKASR------------------------TVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHKK 56 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~~~------------------------~Vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~ 56 (412)
+||||||||||++|+.+...+. +|+++.||.+|||+|||.+|++|+..+|..++++
T Consensus 151 lrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f~~~~~~ 230 (579)
T COG0443 151 LRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGI 230 (579)
T ss_pred EEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHHhhccCCc
Confidence 5899999999999999886532 8999999999999999999999999999999989
Q ss_pred CCcccHHHHHHhhc--------------ceEEeeecccCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 041209 57 DISGNARALRRLQT--------------TTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQV 122 (412)
Q Consensus 57 ~~~~~~~~~~~l~~--------------~~i~i~~~~~~~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~~~~i 122 (412)
++..+++++.||+. +.+.++.+..+.++..+|||++||+++.+++.++..++.++|.++++++.+|
T Consensus 231 d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~~al~~a~l~~~~I 310 (579)
T COG0443 231 DLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKSDI 310 (579)
T ss_pred cccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhC
Confidence 99999888877777 4455555556667889999999999999999999999999999999999999
Q ss_pred ceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhCCCCccccceEEEeccCccccccccC----
Q 041209 123 HDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNKKVQDLLLLDVTPLSLGIETAG---- 198 (412)
Q Consensus 123 d~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~~~~~~~~~~~~~dv~~~s~gi~~~~---- 198 (412)
+.|+||||+||||.|++.+++.| ++++..++|||++||.|||++|+.+++. .+++.+.|++|+++|+++.+
T Consensus 311 ~~VilvGGstriP~V~~~v~~~f-~~~~~~~inpdeava~GAa~qa~~l~~~----~~d~ll~Dv~plslgie~~~~~~~ 385 (579)
T COG0443 311 DLVILVGGSTRIPAVQELVKEFF-GKEPEKSINPDEAVALGAAIQAAVLSGE----VPDVLLLDVIPLSLGIETLGGVRT 385 (579)
T ss_pred ceEEEccceeccHHHHHHHHHHh-CccccccCCccHHHHHHHHHHHHhhcCc----ccCceEEeeeeeccccccCcchhh
Confidence 99999999999999999999999 5899999999999999999999999864 33899999999999999875
Q ss_pred ---------------------CCCCeEEEEEeecccccccCCceeeEEEEeCCCCCCCCCCeEEEEEEecCceeEEEEEE
Q 041209 199 ---------------------DNRPSVLIQVYEGERARTKDNNLLGKFELKGIPPAPRGVPQINVCFDIDANGILHVSAK 257 (412)
Q Consensus 199 ---------------------d~q~~i~i~i~eG~~~~~~~n~~l~~~~l~~i~~~~~g~~~i~v~f~id~~g~l~v~a~ 257 (412)
|+|..+.++++||++....+|..+|.|.+.++||.|+|.++|+|+|.+|.||+++|++.
T Consensus 386 ~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~~gi~~v~a~ 465 (579)
T COG0443 386 PIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVTAK 465 (579)
T ss_pred hHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEEeccCCCcceEeeee
Confidence 88999999999999999999999999999999999999999999999999999999998
Q ss_pred eccCC----ceeecCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHhhhhhcchhhhhcCCCHHhHHHHH
Q 041209 258 DKTAG----ITITNDKGRLSKEEIERMVQEAEKYKAEDEEIKKKVEAKNSLENYAYNMSNTVRDEKFAGKLDPADKQKIE 333 (412)
Q Consensus 258 ~~~t~----i~i~~~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~lE~~i~~~r~~l~~~~~~~~~~~~e~~~i~ 333 (412)
+..++ ++|....+ |++++++.+.+....+.+.|...++..+.+|..+.+++.++..+.+ .. .++++++..+.
T Consensus 466 ~~~~~k~~~i~i~~~~~-ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~--~~-~~~~~~~~~~~ 541 (579)
T COG0443 466 DLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKE--IV-KVSEEEKEKIE 541 (579)
T ss_pred cccCCceEEEEEecCCC-CCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhh--hc-cCCHHHHHHHH
Confidence 88766 77888877 9999999999999999999999999999999999999999999987 33 88999999999
Q ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHh
Q 041209 334 KAIDEAIEWLDGNQLVEVDELEDKLKELKGFCNPIIAKMYE 374 (412)
Q Consensus 334 ~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r~~e 374 (412)
.++.++++||+. + .++++.+.++|.....++..++++
T Consensus 542 ~~~~~~~~~l~~-~---~~~~~~~~~~l~~~~~~~~~~~~~ 578 (579)
T COG0443 542 EAITDLEEALEG-E---KEEIKAKIEELQEVTQKLAEKKYQ 578 (579)
T ss_pred HHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999998 2 899999999999999999988764
No 18
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-52 Score=415.62 Aligned_cols=370 Identities=32% Similarity=0.549 Sum_probs=319.1
Q ss_pred CcccchhHHHHHHhcccCCC-----CC--------------------------eEEEecCCCCCchHHHHHHHHHHHHHH
Q 041209 1 MRIINEPTAAAIAYGLDNKA-----SR--------------------------TVKATAGDTHLGGEDFDNRLVNHFVAE 49 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~-----~~--------------------------~Vla~~gd~~lGG~d~D~~l~~~~~~~ 49 (412)
+|||||.||+||+||+.+.. ++ +|+++.+|.++||++||.+|++||+.+
T Consensus 168 lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~e 247 (727)
T KOG0103|consen 168 LRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALIDHFAKE 247 (727)
T ss_pred eeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHHHHHHHHH
Confidence 68999999999999998764 21 999999999999999999999999999
Q ss_pred HHhhccCCCcccHHHHHHhhc--------------ceEEeeecccCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041209 50 FKRKHKKDISGNARALRRLQT--------------TTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDS 115 (412)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~l~~--------------~~i~i~~~~~~~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a 115 (412)
|+.+|+++...++++..||+. ...++++++++.|.+..|+|++||++|.|+++|+..++.++|+++
T Consensus 248 fk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~~~~l~d~ 327 (727)
T KOG0103|consen 248 FKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPLLKALADA 327 (727)
T ss_pred hccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 999999999999998888776 457889999999999999999999999999999999999999999
Q ss_pred CCCCCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhCCCCccccceEEEeccCcccccc
Q 041209 116 KIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNKKVQDLLLLDVTPLSLGIE 195 (412)
Q Consensus 116 ~~~~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~~~~~~~~~~~~~dv~~~s~gi~ 195 (412)
+++.+||+.|++|||+||||.|++.|+++| ++++.+++|.|+|||+|||+++|++| +.|+++.+.++|+.||++.+.
T Consensus 328 ~l~~edi~~VEiVGg~sripaike~Is~~F-gke~s~TlN~dEavarG~ALqcAIlS--P~frVRef~v~Di~pysIs~~ 404 (727)
T KOG0103|consen 328 KLKVEDIHAVEIVGGLSRIPAIKEMISDFF-GKELSRTLNQDEAVARGAALQCAILS--PTFRVREFSVEDIVPYSISLR 404 (727)
T ss_pred cCccccceeEEEecCcccchHHHHHHHHHh-CCcccccccHHHHHHHhHHHHHHhcC--ccccceecceecccceeEEEE
Confidence 999999999999999999999999999999 89999999999999999999999999 899999999999999999998
Q ss_pred ccC---CCC-----------------------CeEEEEEeecc-cccccCCceeeEEEEeCCCCCCCC-CCeEEEEEEec
Q 041209 196 TAG---DNR-----------------------PSVLIQVYEGE-RARTKDNNLLGKFELKGIPPAPRG-VPQINVCFDID 247 (412)
Q Consensus 196 ~~~---d~q-----------------------~~i~i~i~eG~-~~~~~~n~~l~~~~l~~i~~~~~g-~~~i~v~f~id 247 (412)
+.. |.+ ..+.+.++... ...+.....|++|++.++.+...| ..++.|+..++
T Consensus 405 w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~ge~skVKvkvr~n 484 (727)
T KOG0103|consen 405 WVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKGPFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGEFSKVKVKVRLN 484 (727)
T ss_pred eccccccCCCceeeecCCCCCCCceEEEEEecCceEEEEEeccccccCCCCCceeeEEecccccCccccccceeEEEEEc
Confidence 764 211 12233333333 233334467999999988876663 44789999999
Q ss_pred CceeEEEEEE---------ec-----c---------------C-------Cceeec-CCCCCCHHHHHHHHHHHHHHhhh
Q 041209 248 ANGILHVSAK---------DK-----T---------------A-------GITITN-DKGRLSKEEIERMVQEAEKYKAE 290 (412)
Q Consensus 248 ~~g~l~v~a~---------~~-----~---------------t-------~i~i~~-~~~~ls~e~i~~~~~~~~~~~~~ 290 (412)
.+|++.|... +. . + ++.+.. ..+.|+..+++..++++.+|...
T Consensus 485 ~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l~~~~l~~~~e~E~~M~~q 564 (727)
T KOG0103|consen 485 EHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGALITDELELYIEKENKMILQ 564 (727)
T ss_pred CccceeeecceeecccchhccccchhhhhcchhhhhhhccccccceeeeccccceeeeccccCHHHHHHHHHHHHHhhhh
Confidence 9999998431 00 0 0 022222 23579999999999999999999
Q ss_pred cHHHHHHHHHHhhHHHHHHhhhhhcchhhhhcCCCHHhHHHHHHHHHHHHHHHcC-CCCcCHHHHHHHHHHHHHhHHHHH
Q 041209 291 DEEIKKKVEAKNSLENYAYNMSNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDG-NQLVEVDELEDKLKELKGFCNPII 369 (412)
Q Consensus 291 D~~~~~~~~a~N~lE~~i~~~r~~l~~~~~~~~~~~~e~~~i~~~l~~~~~wl~~-~~~~~~~~~~~~~~~L~~~~~~i~ 369 (412)
|+...++..++|.||+|+|.+|++|.+ .|..++++.+++.+...|+++++|||+ +++.+...|..|+.+|+...+ .
T Consensus 565 D~~~~Et~D~KNaleeyVY~~R~kl~~-~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl~elk~~g~--~ 641 (727)
T KOG0103|consen 565 DKLEKETVDAKNALEEYVYDMRDKLSD-KYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKLEELKKLGD--K 641 (727)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHhhh-hhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHhhhh--h
Confidence 999999999999999999999999987 799999999999999999999999997 589999999999999999886 5
Q ss_pred HHHHhcC
Q 041209 370 AKMYEGG 376 (412)
Q Consensus 370 ~r~~e~~ 376 (412)
.||.+..
T Consensus 642 ~r~~e~~ 648 (727)
T KOG0103|consen 642 KRFDENE 648 (727)
T ss_pred hhhhhhh
Confidence 5555433
No 19
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-45 Score=364.63 Aligned_cols=375 Identities=29% Similarity=0.484 Sum_probs=315.8
Q ss_pred CcccchhHHHHHHhcccCCC---CC------------------------------------eEEEecCCCCCchHHHHHH
Q 041209 1 MRIINEPTAAAIAYGLDNKA---SR------------------------------------TVKATAGDTHLGGEDFDNR 41 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~---~~------------------------------------~Vla~~gd~~lGG~d~D~~ 41 (412)
++|||+-+||||.|++.+.. +. .|++.++|..|||..|.++
T Consensus 189 LqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~r 268 (902)
T KOG0104|consen 189 LQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRTLGGLEMTMR 268 (902)
T ss_pred hhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCccchHHHHHH
Confidence 57999999999999998743 11 8999999999999999999
Q ss_pred HHHHHHHHHHhhccC--CCcccHHHHHHhhc--------------ceEEeeecccCceeEEEEeHHHHHHHHHHHHHHHH
Q 041209 42 LVNHFVAEFKRKHKK--DISGNARALRRLQT--------------TTIEIDSLYEGIDFYATITRARFEELNMDLFRKCM 105 (412)
Q Consensus 42 l~~~~~~~~~~~~~~--~~~~~~~~~~~l~~--------------~~i~i~~~~~~~~~~~~itr~efe~~~~~~~~~~~ 105 (412)
|.+|+.+.|.++++. ++..++|++.+|.+ +.++|+++++|+||..+|||++||++|+++..|+.
T Consensus 269 Lr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEelc~Dl~~r~~ 348 (902)
T KOG0104|consen 269 LRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEELCADLEERIV 348 (902)
T ss_pred HHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHHHHHHHHHhhh
Confidence 999999999998873 67888999998877 56789999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhCCCCccccceEEE
Q 041209 106 EPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNKKVQDLLLL 185 (412)
Q Consensus 106 ~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~~~~~~~~~~~~~ 185 (412)
.||+++|..++++.++|+.|+|+||+||+|.||+.|.++.+..++...+|+|||+++||+++|+.|| ..|+++++.+.
T Consensus 349 ~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LS--ksFKvKpf~V~ 426 (902)
T KOG0104|consen 349 EPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLS--KSFKVKPFNVV 426 (902)
T ss_pred hhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhc--ccccccceeee
Confidence 9999999999999999999999999999999999999999888999999999999999999999999 88999999999
Q ss_pred eccCccccccccCC---------------------CCCeEEEEEeecccccccCCceee----EEEEeCCCCC----CCC
Q 041209 186 DVTPLSLGIETAGD---------------------NRPSVLIQVYEGERARTKDNNLLG----KFELKGIPPA----PRG 236 (412)
Q Consensus 186 dv~~~s~gi~~~~d---------------------~q~~i~i~i~eG~~~~~~~n~~l~----~~~l~~i~~~----~~g 236 (412)
|.++|+|.++..+. +.+-+.+.=|..+-.+..+-..+| .+.++|+... +..
T Consensus 427 D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysddf~~~~n~~~~~~nl~~velsgV~d~~kk~~~~ 506 (902)
T KOG0104|consen 427 DASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDDFPFNINYGDLGQNLTTVELSGVKDALKKNSYS 506 (902)
T ss_pred ecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCccccccchhhhccCccEEEEecchHHHHhcccc
Confidence 99999887765431 111122222322222222223344 7888877642 221
Q ss_pred ---CCeEEEEEEecCceeEEEEEEe----c---------------------------------------------cC---
Q 041209 237 ---VPQINVCFDIDANGILHVSAKD----K---------------------------------------------TA--- 261 (412)
Q Consensus 237 ---~~~i~v~f~id~~g~l~v~a~~----~---------------------------------------------~t--- 261 (412)
...|.+.|.+|..|++.|+..+ + ++
T Consensus 507 ~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~~e~ae~k~~ep~e~se~~e 586 (902)
T KOG0104|consen 507 DSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQEEDAEEKGLEPSERSELEE 586 (902)
T ss_pred hhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhccccccccccccccccchhhhhhhccCccccccccc
Confidence 3458999999999999875411 0 00
Q ss_pred -----------------C-----------------ceeec---CCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhH
Q 041209 262 -----------------G-----------------ITITN---DKGRLSKEEIERMVQEAEKYKAEDEEIKKKVEAKNSL 304 (412)
Q Consensus 262 -----------------~-----------------i~i~~---~~~~ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~l 304 (412)
. +.|.. +...|+...+....+++..+...|+...++.++.|+|
T Consensus 587 e~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl~d~~~~e~~k~~re~a~N~L 666 (902)
T KOG0104|consen 587 EAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLEDFVQKEKEKSEREEASNEL 666 (902)
T ss_pred cccccccccccccccchhccCcchhhcccCcceeEeeeeeecccccCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 0 11111 1235888999999999999999999999999999999
Q ss_pred HHHHHhhhhhcchhhhhcCCCHHhHHHHHHHHHHHHHHHcCC-CCcCHHHHHHHHHHHHHhHHHHHHHHHhcCC
Q 041209 305 ENYAYNMSNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGN-QLVEVDELEDKLKELKGFCNPIIAKMYEGGA 377 (412)
Q Consensus 305 E~~i~~~r~~l~~~~~~~~~~~~e~~~i~~~l~~~~~wl~~~-~~~~~~~~~~~~~~L~~~~~~i~~r~~e~~~ 377 (412)
|.|+|++...+.+++|..+.+++++..+...+..+.+||++. ....+.+|++++.+|++++..+..|..++.+
T Consensus 667 E~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~l~~~~~~R~ee~kq 740 (902)
T KOG0104|consen 667 EAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELKKLETSKNFREEERKQ 740 (902)
T ss_pred HHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 999999999999989999999999999999999999999974 7789999999999999999999999887664
No 20
>PRK11678 putative chaperone; Provisional
Probab=99.91 E-value=6.5e-24 Score=214.56 Aligned_cols=164 Identities=20% Similarity=0.302 Sum_probs=126.0
Q ss_pred CcccchhHHHHHHhcccCCCCC-------------------------------eEEEecCCCCCchHHHHHHHH-HHHHH
Q 041209 1 MRIINEPTAAAIAYGLDNKASR-------------------------------TVKATAGDTHLGGEDFDNRLV-NHFVA 48 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~~~-------------------------------~Vla~~gd~~lGG~d~D~~l~-~~~~~ 48 (412)
++||+||+|||++|+.....++ +|+++.| .+|||+|||..|+ +|+..
T Consensus 188 v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~ 266 (450)
T PRK11678 188 VEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMP 266 (450)
T ss_pred EEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHH
Confidence 5799999999999987544322 5888888 5899999999998 67887
Q ss_pred HHHh----hccCCC-----------------------------------cccHHHHHHh------------hc-------
Q 041209 49 EFKR----KHKKDI-----------------------------------SGNARALRRL------------QT------- 70 (412)
Q Consensus 49 ~~~~----~~~~~~-----------------------------------~~~~~~~~~l------------~~------- 70 (412)
.|.. +.+.++ ..+++.+.+| +.
T Consensus 267 ~fg~~~~~~~g~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~ 346 (450)
T PRK11678 267 LLGMGSETEKGIALPSLPFWNAVAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKI 346 (450)
T ss_pred HhhhchhhccCCcCcchhhhhhhhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 7752 111100 0123333322 21
Q ss_pred -------ceEEeeecccCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHH
Q 041209 71 -------TTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQD 143 (412)
Q Consensus 71 -------~~i~i~~~~~~~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~ 143 (412)
+.+.++.+ +.++.++|||++|+++++|+++++..+++++|+++++.+ +.|+||||+||||.|++.|++
T Consensus 347 ~LS~~~~a~i~~~~~--~~~~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~~---d~VvLvGGsSriP~V~~~l~~ 421 (450)
T PRK11678 347 ALSDQAETRASLDFI--SDGLATEISQQGLEEAISQPLARILELVQLALDQAQVKP---DVIYLTGGSARSPLIRAALAQ 421 (450)
T ss_pred HcCCCCceEEEeccc--CCCcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---CEEEEcCcccchHHHHHHHHH
Confidence 33444433 346789999999999999999999999999999999764 789999999999999999999
Q ss_pred hhCCCcccccCCCchhHHhHHHHHHHHH
Q 041209 144 FFNGKELCKSINPDEAVAYGAAVQAAIL 171 (412)
Q Consensus 144 ~f~~~~~~~~~~pd~aVA~GAa~~a~~l 171 (412)
.||..+ ....+|+++||.|+|++|..+
T Consensus 422 ~fg~~~-v~~g~~~~sVa~Gla~~a~~~ 448 (450)
T PRK11678 422 QLPGIP-IVGGDDFGSVTAGLARWAQVV 448 (450)
T ss_pred HCCCCc-EEeCCCcchHHHHHHHHHHhh
Confidence 995544 456799999999999999764
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.85 E-value=1.5e-20 Score=184.72 Aligned_cols=163 Identities=20% Similarity=0.334 Sum_probs=126.9
Q ss_pred CcccchhHHHHHHhcccCCCCC--------------------eEEEecCCCCCchHHHHHHHHHHHHHHHHhhccCCCcc
Q 041209 1 MRIINEPTAAAIAYGLDNKASR--------------------TVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHKKDISG 60 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~~~--------------------~Vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~ 60 (412)
++|++||+|||++|+.+...+. .++ +.++..+||++||+.|++++..+|....+
T Consensus 126 ~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~-~~~~~~lGG~did~~i~~~l~~~~~~~~~----- 199 (336)
T PRK13928 126 VYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIV-TSSSIKVAGDKFDEAIIRYIRKKYKLLIG----- 199 (336)
T ss_pred eEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEE-EeCCcCCHHHHHHHHHHHHHHHHhchhcC-----
Confidence 4689999999999998543221 222 34578999999999999999987753321
Q ss_pred cHHHHHHhhc-----------ceEEee--ecccCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCccc-e
Q 041209 61 NARALRRLQT-----------TTIEID--SLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSK--IDKSQVH-D 124 (412)
Q Consensus 61 ~~~~~~~l~~-----------~~i~i~--~~~~~~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~--~~~~~id-~ 124 (412)
.+...+++. ..+.+. .+..+.+..++|||++|++++.++++++...++++|+.++ +..+.++ .
T Consensus 200 -~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~ 278 (336)
T PRK13928 200 -ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAIVQAVKSVLERTPPELSADIIDRG 278 (336)
T ss_pred -HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCC
Confidence 122223322 111211 1234566789999999999999999999999999999986 5567787 7
Q ss_pred EEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHH
Q 041209 125 VVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAIL 171 (412)
Q Consensus 125 V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l 171 (412)
|+|+||+|+||.|++.+++.| +.++....||++|||+|||+++..+
T Consensus 279 IvL~GG~s~ipgi~e~l~~~~-~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 279 IIMTGGGALLHGLDKLLAEET-KVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred EEEECcccchhhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhch
Confidence 999999999999999999999 7788888899999999999998765
No 22
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.79 E-value=1.3e-18 Score=170.84 Aligned_cols=164 Identities=24% Similarity=0.366 Sum_probs=123.4
Q ss_pred CcccchhHHHHHHhcccCCCCC--------------eEE-----EecCCCCCchHHHHHHHHHHHHHHHHhhccCCCccc
Q 041209 1 MRIINEPTAAAIAYGLDNKASR--------------TVK-----ATAGDTHLGGEDFDNRLVNHFVAEFKRKHKKDISGN 61 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~~~--------------~Vl-----a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~ 61 (412)
+.|++||+|||++|+.....+. .++ ...++..+||++||+.|.+++.++|... ..
T Consensus 127 ~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~----~~-- 200 (334)
T PRK13927 127 VYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGGIVYSKSVRVGGDKFDEAIINYVRRNYNLL----IG-- 200 (334)
T ss_pred eccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEecCCeEeeCCcCChHHHHHHHHHHHHHHHhCcC----cC--
Confidence 4689999999999988543221 111 2345678999999999999998766422 11
Q ss_pred HHHHHHhhc-----------ceEEe--eecccCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCccc-eE
Q 041209 62 ARALRRLQT-----------TTIEI--DSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKID--KSQVH-DV 125 (412)
Q Consensus 62 ~~~~~~l~~-----------~~i~i--~~~~~~~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~--~~~id-~V 125 (412)
.....+++. ..+.+ +....+.+..++|+|++|++++.+.++++..++.++|+++... .+.++ .|
T Consensus 201 ~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~I 280 (334)
T PRK13927 201 ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLSAIVEAVKVALEQTPPELAADIVDRGI 280 (334)
T ss_pred HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCE
Confidence 223334433 11222 1223455668899999999999999999999999999988643 23344 59
Q ss_pred EEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHH
Q 041209 126 VLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAIL 171 (412)
Q Consensus 126 ~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l 171 (412)
+|+||+|++|.+++.|++.| +.++....||+++||+|||+++..+
T Consensus 281 vL~GG~s~ipgl~~~l~~~~-~~~v~~~~~P~~ava~Ga~~~~~~~ 325 (334)
T PRK13927 281 VLTGGGALLRGLDKLLSEET-GLPVHVAEDPLTCVARGTGKALENI 325 (334)
T ss_pred EEECchhhhhHHHHHHHHHH-CCCcEecCCHHHHHHHHHHHHHhhH
Confidence 99999999999999999999 6788888899999999999998663
No 23
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.76 E-value=8.6e-18 Score=164.99 Aligned_cols=161 Identities=21% Similarity=0.340 Sum_probs=122.6
Q ss_pred CcccchhHHHHHHhcccCCCCC--------------eEE-----EecCCCCCchHHHHHHHHHHHHHHHHhhccCCCccc
Q 041209 1 MRIINEPTAAAIAYGLDNKASR--------------TVK-----ATAGDTHLGGEDFDNRLVNHFVAEFKRKHKKDISGN 61 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~~~--------------~Vl-----a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~ 61 (412)
++|++||+|||++|+.....+. .++ ...++..+||++||+.|++|+..+|.. .. .
T Consensus 129 ~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~~~~~~GG~~id~~l~~~l~~~~~~----~~--~ 202 (335)
T PRK13929 129 VHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVVSCHSIRIGGDQLDEDIVSFVRKKYNL----LI--G 202 (335)
T ss_pred eEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEEEecCcCCHHHHHHHHHHHHHHHHhCc----Cc--C
Confidence 4789999999999987543321 121 234568899999999999999876532 22 1
Q ss_pred HHHHHHhhc-----------ceEEee--ecccCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCccc-eE
Q 041209 62 ARALRRLQT-----------TTIEID--SLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKI--DKSQVH-DV 125 (412)
Q Consensus 62 ~~~~~~l~~-----------~~i~i~--~~~~~~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~--~~~~id-~V 125 (412)
.....++|. ..+.+. .+..+.+..++|+|++|+++|.+++.++...+.++|+++.. ..+.++ .|
T Consensus 203 ~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gI 282 (335)
T PRK13929 203 ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGV 282 (335)
T ss_pred HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchhhcCCCE
Confidence 233344443 111221 12234567899999999999999999999999999999853 446677 69
Q ss_pred EEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHH
Q 041209 126 VLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQA 168 (412)
Q Consensus 126 ~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a 168 (412)
+|+||+|++|.+++.+++.| +.++....||+++||+||+..-
T Consensus 283 vLtGG~s~lpgl~e~l~~~~-~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 283 ILTGGGALLNGIKEWLSEEI-VVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred EEEchhhhhhhHHHHHHHHH-CCCceeCCCHHHHHHHHHHHHH
Confidence 99999999999999999999 7788888899999999999874
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.75 E-value=1.7e-17 Score=163.01 Aligned_cols=163 Identities=23% Similarity=0.361 Sum_probs=120.6
Q ss_pred CcccchhHHHHHHhcccCCCCC--------------eEE-----EecCCCCCchHHHHHHHHHHHHHHHHhhccCCCccc
Q 041209 1 MRIINEPTAAAIAYGLDNKASR--------------TVK-----ATAGDTHLGGEDFDNRLVNHFVAEFKRKHKKDISGN 61 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~~~--------------~Vl-----a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~ 61 (412)
+.|++||+|||++|+.....+. .++ ...++..+||++||+.|++|+..+|.. ...
T Consensus 129 ~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~~~~~~~~~~lGG~did~~l~~~l~~~~~~----~~~-- 202 (333)
T TIGR00904 129 VYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIVVSRSIRVGGDEFDEAIINYIRRTYNL----LIG-- 202 (333)
T ss_pred EEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeCCEEecCCccchHHHHHHHHHHHHHHHhcc----cCC--
Confidence 4689999999999987543221 222 234567899999999999999876632 221
Q ss_pred HHHHHHhhc----c--------eEEeee--cccCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-Ccc-c-e
Q 041209 62 ARALRRLQT----T--------TIEIDS--LYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDK-SQV-H-D 124 (412)
Q Consensus 62 ~~~~~~l~~----~--------~i~i~~--~~~~~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~~-~~i-d-~ 124 (412)
.+...+++. + .+.+.. ...+.+..+.|++++|.+++.+.++++...+.++++.+.... .++ + .
T Consensus 203 ~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~ 282 (333)
T TIGR00904 203 EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQEPVNQIVEAVKRTLEKTPPELAADIVERG 282 (333)
T ss_pred HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhccCC
Confidence 233344433 1 111111 112334567999999999999999999999999999876432 234 3 6
Q ss_pred EEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHH
Q 041209 125 VVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAI 170 (412)
Q Consensus 125 V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~ 170 (412)
|+|+||+|++|.+++.|++.| +.++....||+++||.||++++..
T Consensus 283 IvL~GGss~ipgl~e~l~~~~-~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 283 IVLTGGGALLRNLDKLLSKET-GLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred EEEECcccchhhHHHHHHHHH-CCCceecCChHHHHHHHHHHHHhC
Confidence 999999999999999999999 788888889999999999999754
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.74 E-value=2.9e-17 Score=161.44 Aligned_cols=163 Identities=21% Similarity=0.334 Sum_probs=121.9
Q ss_pred CcccchhHHHHHHhcccCCCCC--------------------eEEEecCCCCCchHHHHHHHHHHHHHHHHhhccCCCcc
Q 041209 1 MRIINEPTAAAIAYGLDNKASR--------------------TVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHKKDISG 60 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~~~--------------------~Vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~ 60 (412)
+.+++||+|||++|+.....+. .++. .+...+||++||+.|.+++..++. ....
T Consensus 131 ~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~~-~~~~~lGG~~id~~l~~~l~~~~~----~~~~- 204 (335)
T PRK13930 131 VYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIVY-SESIRVAGDEMDEAIVQYVRRKYN----LLIG- 204 (335)
T ss_pred EEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEEe-ecCcCchhHHHHHHHHHHHHHHhC----CCCC-
Confidence 4689999999999987543211 3333 456899999999999999988753 2221
Q ss_pred cHHHHHHhhc----c-------eEEee--ecccCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCccce-
Q 041209 61 NARALRRLQT----T-------TIEID--SLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKID--KSQVHD- 124 (412)
Q Consensus 61 ~~~~~~~l~~----~-------~i~i~--~~~~~~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~--~~~id~- 124 (412)
.....++|. . .+.+. ....+.+..++|+|++|++++.+.++++.+.+.++|+.+... .+.++.
T Consensus 205 -~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~ 283 (335)
T PRK13930 205 -ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRG 283 (335)
T ss_pred -HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCC
Confidence 223334433 0 12221 122344567899999999999999999999999999987532 234565
Q ss_pred EEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHH
Q 041209 125 VVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAIL 171 (412)
Q Consensus 125 V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l 171 (412)
|+|+||+|++|.+++.|++.| +.++....+|+++||+||++++...
T Consensus 284 IvL~GG~s~ipg~~~~l~~~~-~~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 284 IVLTGGGALLRGLDKLLSEET-GLPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred EEEECchhcchhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhCh
Confidence 999999999999999999999 6777788899999999999998654
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.59 E-value=8.1e-15 Score=141.80 Aligned_cols=159 Identities=22% Similarity=0.341 Sum_probs=121.4
Q ss_pred CcccchhHHHHHHhcccCCCCC--------------------eEEEecCCCCCchHHHHHHHHHHHHHHHHhhccCCCcc
Q 041209 1 MRIINEPTAAAIAYGLDNKASR--------------------TVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHKKDISG 60 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~~~--------------------~Vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~ 60 (412)
|.||+||.|||+..+++-.... .++.+.. ...||++||++|.+|++++|.-..+
T Consensus 124 V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdiavislggiv~s~s-i~~gG~~~DeaI~~~ir~~y~l~Ig----- 197 (326)
T PF06723_consen 124 VYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDIAVISLGGIVASRS-IRIGGDDIDEAIIRYIREKYNLLIG----- 197 (326)
T ss_dssp EEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEEEEE-ES-SHHHHHHHHHHHHHHHHSEE-------
T ss_pred EEEecchHHHHhcCCCCCCCCCceEEEEECCCeEEEEEEECCCEEEEEE-EEecCcchhHHHHHHHHHhhCcccC-----
Confidence 4689999999999998765422 4444444 6899999999999999998853222
Q ss_pred cHHHHHHhhc-------------ceEEeeecccCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---cc--
Q 041209 61 NARALRRLQT-------------TTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKS---QV-- 122 (412)
Q Consensus 61 ~~~~~~~l~~-------------~~i~i~~~~~~~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~~~---~i-- 122 (412)
.+...+++. ..+.-..+..+.+..+.|+.+++.++|++.+.++.+.++++|++.. |+ ||
T Consensus 198 -~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~~~Le~~p--Pel~~DI~~ 274 (326)
T PF06723_consen 198 -ERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVEAIKEVLEKTP--PELAADILE 274 (326)
T ss_dssp -HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS---HHHHHHHHH
T ss_pred -HHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHH
Confidence 333344443 2334445667889999999999999999999999999999998853 33 22
Q ss_pred ceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHH
Q 041209 123 HDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAA 169 (412)
Q Consensus 123 d~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~ 169 (412)
+.|+|+||+|+++.+.++|++.+ +.++...-||..|||.||.....
T Consensus 275 ~GI~LtGGga~l~Gl~~~i~~~~-~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 275 NGIVLTGGGALLRGLDEYISEET-GVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp H-EEEESGGGGSBTHHHHHHHHH-SS-EEE-SSTTTHHHHHHHHTTC
T ss_pred CCEEEEChhhhhccHHHHHHHHH-CCCEEEcCCHHHHHHHHHHHHHh
Confidence 35999999999999999999999 88999999999999999997653
No 27
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.50 E-value=1.2e-13 Score=129.17 Aligned_cols=132 Identities=20% Similarity=0.323 Sum_probs=101.1
Q ss_pred CcccchhHHHHHHhcccCCC------CC---------eEEEecCCCCCchHHHHHHHHHHHHHHHHhhccCCCcccHHHH
Q 041209 1 MRIINEPTAAAIAYGLDNKA------SR---------TVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHKKDISGNARAL 65 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~------~~---------~Vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (412)
++|++||+|||++|+..... .. .++.+ .+..+||++||+.|.+++. +++ ...
T Consensus 92 ~~li~ep~Aaa~~~~~~~~~vvDiGggtt~i~i~~~G~i~~~-~~~~~GG~~it~~Ia~~~~--------i~~----~~A 158 (239)
T TIGR02529 92 LHVLDEPTAAAAVLQIKNGAVVDVGGGTTGISILKKGKVIYS-ADEPTGGTHMSLVLAGAYG--------ISF----EEA 158 (239)
T ss_pred EEEeehHHHHHHHhcCCCcEEEEeCCCcEEEEEEECCeEEEE-EeeecchHHHHHHHHHHhC--------CCH----HHH
Confidence 36899999999999754321 11 45544 3578999999998865542 222 223
Q ss_pred HHhhcceEEeeecccCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhh
Q 041209 66 RRLQTTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFF 145 (412)
Q Consensus 66 ~~l~~~~i~i~~~~~~~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f 145 (412)
.+++... . +.+++.+++.++++++...++++|++.+ ++.|+|+||+|++|.+++.+++.|
T Consensus 159 E~~K~~~-------~--------~~~~~~~~i~~~~~~i~~~i~~~l~~~~-----~~~v~LtGG~a~ipgl~e~l~~~l 218 (239)
T TIGR02529 159 EEYKRGH-------K--------DEEEIFPVVKPVYQKMASIVKRHIEGQG-----VKDLYLVGGACSFSGFADVFEKQL 218 (239)
T ss_pred HHHHHhc-------C--------CHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCEEEEECchhcchhHHHHHHHHh
Confidence 3333210 0 2567889999999999999999998653 578999999999999999999999
Q ss_pred CCCcccccCCCchhHHhHHHH
Q 041209 146 NGKELCKSINPDEAVAYGAAV 166 (412)
Q Consensus 146 ~~~~~~~~~~pd~aVA~GAa~ 166 (412)
+.++..+.||+++||.|||+
T Consensus 219 -g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 219 -GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred -CCCcccCCCCCeehhheeec
Confidence 78888889999999999986
No 28
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.45 E-value=7.1e-13 Score=125.95 Aligned_cols=133 Identities=22% Similarity=0.340 Sum_probs=104.0
Q ss_pred cccchhHHHHHHhcccCCC------CC---------eEEEecCCCCCchHHHHHHHHHHHHHHHHhhccCCCcccHHHHH
Q 041209 2 RIINEPTAAAIAYGLDNKA------SR---------TVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHKKDISGNARALR 66 (412)
Q Consensus 2 ~li~EPtAAAl~y~~~~~~------~~---------~Vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~ 66 (412)
.+++||+|++++|...... .. .++.+ ++..+||++||+.|++++. +++ ....
T Consensus 120 ~ii~e~~A~a~~~~~~~~~vvDIGggtt~i~v~~~g~~~~~-~~~~~GG~~it~~Ia~~l~--------i~~----~eAE 186 (267)
T PRK15080 120 HVLDEPTAAAAVLGIDNGAVVDIGGGTTGISILKDGKVVYS-ADEPTGGTHMSLVLAGAYG--------ISF----EEAE 186 (267)
T ss_pred EEechHHHHHHHhCCCCcEEEEeCCCcEEEEEEECCeEEEE-ecccCchHHHHHHHHHHhC--------CCH----HHHH
Confidence 4899999999988654321 11 44444 4689999999999987752 221 2223
Q ss_pred HhhcceEEeeecccCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhhC
Q 041209 67 RLQTTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFN 146 (412)
Q Consensus 67 ~l~~~~i~i~~~~~~~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f~ 146 (412)
+++... -+++++.++++|+++++.+.+++.++.. .++.|+|+||+|++|.+++.+++.|
T Consensus 187 ~lK~~~---------------~~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~l- 245 (267)
T PRK15080 187 QYKRDP---------------KHHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQT- 245 (267)
T ss_pred HHHhcc---------------CCHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHh-
Confidence 333210 1468899999999999999999999864 4789999999999999999999999
Q ss_pred CCcccccCCCchhHHhHHHHHH
Q 041209 147 GKELCKSINPDEAVAYGAAVQA 168 (412)
Q Consensus 147 ~~~~~~~~~pd~aVA~GAa~~a 168 (412)
+.++....||+.++|+|||+|+
T Consensus 246 g~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 246 GLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred CCCcccCCCchHHHHHHHHhhC
Confidence 7888888999999999999874
No 29
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.42 E-value=1.4e-12 Score=129.96 Aligned_cols=157 Identities=20% Similarity=0.237 Sum_probs=106.3
Q ss_pred cccchhHHHHHHhcccCCCCC-------------------eEEEecCCCCCchHHHHHHHHHHHH------HHHHhhccC
Q 041209 2 RIINEPTAAAIAYGLDNKASR-------------------TVKATAGDTHLGGEDFDNRLVNHFV------AEFKRKHKK 56 (412)
Q Consensus 2 ~li~EPtAAAl~y~~~~~~~~-------------------~Vla~~gd~~lGG~d~D~~l~~~~~------~~~~~~~~~ 56 (412)
.++.||+|||++|......+. ..+-......+||++||+.|...+. ++++.+++.
T Consensus 176 ~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~~~~i~~GG~~it~~i~~~l~~~~~~AE~lK~~~~~ 255 (371)
T TIGR01174 176 NIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRYTKVIPIGGNHITKDIAKALRTPLEEAERIKIKYGC 255 (371)
T ss_pred eEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEEEeeecchHHHHHHHHHHHhCCCHHHHHHHHHHeeE
Confidence 578999999999864332221 1122234578999999999877542 111111110
Q ss_pred CCcccHHHHHHhhcceEEeeecccCceeEEEEeHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCCCccce-EEEecCCcCc
Q 041209 57 DISGNARALRRLQTTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVE-KCLRDSKIDKSQVHD-VVLVGGSTRI 134 (412)
Q Consensus 57 ~~~~~~~~~~~l~~~~i~i~~~~~~~~~~~~itr~efe~~~~~~~~~~~~~i~-~~l~~a~~~~~~id~-V~LvGGssri 134 (412)
..... .-....+.+... +.+....|||++|++++++.++++...++ +.|++++.. ++++. |+|+||+|+|
T Consensus 256 ~~~~~-----~~~~~~i~~~~~--~~~~~~~is~~~l~~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~i 327 (371)
T TIGR01174 256 ASIPL-----EGPDENIEIPSV--GERPPRSLSRKELAEIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQL 327 (371)
T ss_pred ecccC-----CCCCCEEEeccC--CCCCCeEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcc
Confidence 00000 000122334333 23566899999999999999999999997 999998876 66777 9999999999
Q ss_pred HHHHHHHHHhhCCCccccc------------CCCchhHHhHHHHH
Q 041209 135 PKVQQLLQDFFNGKELCKS------------INPDEAVAYGAAVQ 167 (412)
Q Consensus 135 P~V~~~l~~~f~~~~~~~~------------~~pd~aVA~GAa~~ 167 (412)
|.|++.+++.|+ .++... -+|..++|.|.++|
T Consensus 328 pgi~~~l~~~~~-~~vr~~~P~~~~~~~~~~~~p~~~~a~Gl~~~ 371 (371)
T TIGR01174 328 EGIVELAEKVFD-NPVRIGLPQNIGGLTEDVNDPEYSTAVGLLLY 371 (371)
T ss_pred cCHHHHHHHHhC-CCeEEECCCccCCchhhcCCcHHHHHHHHHhC
Confidence 999999999994 333211 26778888888764
No 30
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.36 E-value=3.5e-12 Score=119.87 Aligned_cols=165 Identities=21% Similarity=0.319 Sum_probs=130.8
Q ss_pred CcccchhHHHHHHhcccCCCCC--------------eEEEecC-----CCCCchHHHHHHHHHHHHHHHHhhccCCCccc
Q 041209 1 MRIINEPTAAAIAYGLDNKASR--------------TVKATAG-----DTHLGGEDFDNRLVNHFVAEFKRKHKKDISGN 61 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~~~--------------~Vla~~g-----d~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~ 61 (412)
|-+++||.|||+..++.-..+. -|++-.| ..++||+.||+.|++|+.++|+.-.+
T Consensus 132 V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGTTevaVISlggiv~~~Sirv~GD~~De~Ii~yvr~~~nl~IG------ 205 (342)
T COG1077 132 VYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIVSSSSVRVGGDKMDEAIIVYVRKKYNLLIG------ 205 (342)
T ss_pred EEEeccHHHHHhcCCCcccCCCCCEEEEeCCCceeEEEEEecCEEEEeeEEEecchhhHHHHHHHHHHhCeeec------
Confidence 4589999999998887654322 2222222 36899999999999999998865443
Q ss_pred HHHHHHhhc---------------ceEEeeecccCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCCccce
Q 041209 62 ARALRRLQT---------------TTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDS--KIDKSQVHD 124 (412)
Q Consensus 62 ~~~~~~l~~---------------~~i~i~~~~~~~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a--~~~~~~id~ 124 (412)
.+...+++. ..+.-..+..+.+-.++++.++..+++++.++++...++.+|+.. .+.++-++.
T Consensus 206 e~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v~~Iveair~~Le~tpPeL~~DI~er 285 (342)
T COG1077 206 ERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPLNGIVEAIRLVLEKTPPELAADIVER 285 (342)
T ss_pred HHHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHHHHHHHHHHHHHhhCCchhcccHhhC
Confidence 334444444 223444556678888999999999999999999999999999986 455566777
Q ss_pred -EEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHh
Q 041209 125 -VVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILS 172 (412)
Q Consensus 125 -V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~ 172 (412)
++|+||.|.+.-+.+.|++.. +.++....+|-.|||.|+......+.
T Consensus 286 givltGGGalLrglD~~i~~et-~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 286 GIVLTGGGALLRGLDRLLSEET-GVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred ceEEecchHHhcCchHhHHhcc-CCeEEECCChHHHHHhccchhhhhhH
Confidence 999999999999999999999 78888889999999999998877664
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.33 E-value=1.3e-11 Score=124.85 Aligned_cols=161 Identities=15% Similarity=0.183 Sum_probs=106.3
Q ss_pred cccchhHHHHHHhcccCCCCC-------------------eEEEecCCCCCchHHHHHHHHHHH------HHHHHhhccC
Q 041209 2 RIINEPTAAAIAYGLDNKASR-------------------TVKATAGDTHLGGEDFDNRLVNHF------VAEFKRKHKK 56 (412)
Q Consensus 2 ~li~EPtAAAl~y~~~~~~~~-------------------~Vla~~gd~~lGG~d~D~~l~~~~------~~~~~~~~~~ 56 (412)
.++.||.|||++|......+. -.+-......+||++|++.|+..+ .++++.+++.
T Consensus 184 ~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~~~~~i~~GG~~it~dIa~~l~i~~~~AE~lK~~~g~ 263 (420)
T PRK09472 184 QLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVTSDIAYAFGTPPSDAEAIKVRHGC 263 (420)
T ss_pred eEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEEEEeeeechHHHHHHHHHHHhCcCHHHHHHHHHhcce
Confidence 578999999999865433222 111122236789999999998765 2222222221
Q ss_pred CCcccHHHHHHhhcceEEeeecccCceeEEEEeHHHHHHHHHHHHHHHHHHHH-------HHHhhcCCCCCccceEEEec
Q 041209 57 DISGNARALRRLQTTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVE-------KCLRDSKIDKSQVHDVVLVG 129 (412)
Q Consensus 57 ~~~~~~~~~~~l~~~~i~i~~~~~~~~~~~~itr~efe~~~~~~~~~~~~~i~-------~~l~~a~~~~~~id~V~LvG 129 (412)
.+..... ....+.++..... ....+||.+|.+++.+-++.+...++ ..+..+++....++.|+|+|
T Consensus 264 ~~~~~~~-----~~~~i~v~~~~~~--~~~~i~~~~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtG 336 (420)
T PRK09472 264 ALGSIVG-----KDESVEVPSVGGR--PPRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTG 336 (420)
T ss_pred eccccCC-----CCceeEecCCCCC--CCeEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeC
Confidence 1110000 0023444433222 22588999999999995555555554 55677788878899999999
Q ss_pred CCcCcHHHHHHHHHhhCCCcccc------------cCCCchhHHhHHHHHHHH
Q 041209 130 GSTRIPKVQQLLQDFFNGKELCK------------SINPDEAVAYGAAVQAAI 170 (412)
Q Consensus 130 GssriP~V~~~l~~~f~~~~~~~------------~~~pd~aVA~GAa~~a~~ 170 (412)
|+|+||.|++.+++.|+ .++.. ..+|..|+|.|.++|+..
T Consensus 337 G~a~lpgi~e~~~~~f~-~~vri~~P~~~~g~~~~~~~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 337 GAAQIEGLAACAQRVFH-TQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGKE 388 (420)
T ss_pred chhccccHHHHHHHHhC-CCeEEeCCcccCCChhhcCCcHHHHHHHHHHHhhh
Confidence 99999999999999994 43322 248999999999999864
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=98.32 E-value=6.6e-06 Score=82.25 Aligned_cols=161 Identities=24% Similarity=0.326 Sum_probs=116.4
Q ss_pred cccchhHHHHHHhcccCCCCC--------------------eEEEecCCCCCchHHHHHHHHHHHH------HHHHhhcc
Q 041209 2 RIINEPTAAAIAYGLDNKASR--------------------TVKATAGDTHLGGEDFDNRLVNHFV------AEFKRKHK 55 (412)
Q Consensus 2 ~li~EPtAAAl~y~~~~~~~~--------------------~Vla~~gd~~lGG~d~D~~l~~~~~------~~~~~~~~ 55 (412)
.++-+|-|+|.+...+...+- .+..+.. ..+||++++..|+.-|. ++++.+|+
T Consensus 183 ~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~~~~-ipvgG~~vT~DIa~~l~t~~~~AE~iK~~~g 261 (418)
T COG0849 183 NIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRYTGV-IPVGGDHVTKDIAKGLKTPFEEAERIKIKYG 261 (418)
T ss_pred eEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEEEee-EeeCccHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 467799999985543322211 5555555 78999999999988773 34444554
Q ss_pred CCCcccHHHHHHhhcceEEeeecccCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcH
Q 041209 56 KDISGNARALRRLQTTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIP 135 (412)
Q Consensus 56 ~~~~~~~~~~~~l~~~~i~i~~~~~~~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP 135 (412)
....... -....+.++...++. ..++||.++.+++++-+..+..+++..|+++++...-...|+|+||++.||
T Consensus 262 ~a~~~~~-----~~~~~i~v~~vg~~~--~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~ 334 (418)
T COG0849 262 SALISLA-----DDEETIEVPSVGSDI--PRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLP 334 (418)
T ss_pred ccccCcC-----CCcceEecccCCCcc--cchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCc
Confidence 3222111 111335555544433 678999999999999999999999999999998866677899999999999
Q ss_pred HHHHHHHHhhCCCcccc------------cCCCchhHHhHHHHHHHHH
Q 041209 136 KVQQLLQDFFNGKELCK------------SINPDEAVAYGAAVQAAIL 171 (412)
Q Consensus 136 ~V~~~l~~~f~~~~~~~------------~~~pd~aVA~GAa~~a~~l 171 (412)
.+.+..++.|+ .++.. ..+|..+.|.|..+|++..
T Consensus 335 Gi~elA~~if~-~~vRig~P~~~~Gl~d~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 335 GIVELAERIFG-RPVRLGVPLNIVGLTDIARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred cHHHHHHHhcC-CceEeCCCccccCchhhccCchhhhhHHHHHHHhhc
Confidence 99999999994 32211 2367899999999998764
No 33
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=98.05 E-value=9.9e-05 Score=72.85 Aligned_cols=155 Identities=15% Similarity=0.221 Sum_probs=103.5
Q ss_pred CcccchhHHHHHHhcccCCC--------C-C--------------------eEEEecCCCCCchHHHHHHHHHHHHHHHH
Q 041209 1 MRIINEPTAAAIAYGLDNKA--------S-R--------------------TVKATAGDTHLGGEDFDNRLVNHFVAEFK 51 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~--------~-~--------------------~Vla~~gd~~lGG~d~D~~l~~~~~~~~~ 51 (412)
|.+++||.+|.+.+..+... + + -+...++....|..++.+.|.+++..+.
T Consensus 156 V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~~- 234 (344)
T PRK13917 156 VKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHISKKE- 234 (344)
T ss_pred EEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHHHhhC-
Confidence 46789999998877664220 1 1 1223333466899999999988885432
Q ss_pred hhccCCCcccHHHHHHhhcceEEeeecccCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEecCC
Q 041209 52 RKHKKDISGNARALRRLQTTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGS 131 (412)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~~~~i~i~~~~~~~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGs 131 (412)
++..+.. .+.-.-|+.-.+.+. .... +.+ ++++.++++++++++...+...+.+ ..+++.|+|+||+
T Consensus 235 --~~~~~~~-~~ie~~l~~g~i~~~---~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGG 301 (344)
T PRK13917 235 --EGASITP-YMLEKGLEYGACKLN---QKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGG 301 (344)
T ss_pred --CCCCCCH-HHHHHHHHcCcEEeC---CCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCc
Confidence 2333321 222222322222321 1112 233 4678889999999999988888754 3478999999999
Q ss_pred cCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhC
Q 041209 132 TRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 173 (412)
Q Consensus 132 sriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~ 173 (412)
+++ +++.|++.|+. +....||..|.|+|...+|..+.+
T Consensus 302 A~l--l~~~lk~~f~~--~~~~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 302 ANI--FFDSLSHWYSD--VEKADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred HHH--HHHHHHHHcCC--eEEcCChHHHHHHHHHHHHHHHhc
Confidence 987 88999999964 345579999999999999987753
No 34
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=98.01 E-value=4.3e-06 Score=83.37 Aligned_cols=164 Identities=18% Similarity=0.190 Sum_probs=99.3
Q ss_pred CcccchhHHHHHHhcccCCC------CC---------eEE-EecCCCCCchHHHHHHHHHHHHHHHHhhccCCCcccHHH
Q 041209 1 MRIINEPTAAAIAYGLDNKA------SR---------TVK-ATAGDTHLGGEDFDNRLVNHFVAEFKRKHKKDISGNARA 64 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~------~~---------~Vl-a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~ 64 (412)
+.++++|.+|+++|+..... .. .++ .......+||+++|+.|.+++..+.. ..+.......
T Consensus 127 v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~---~~~~~~~~~~ 203 (371)
T cd00012 127 LYVAIQAVLSLYASGRTTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAGRDLTRYLKELLRERGY---ELNSSDEREI 203 (371)
T ss_pred EEEechHHHHHHhcCCCeEEEEECCCCeeEEEEEECCEEchhhheeccccHHHHHHHHHHHHHhcCC---CccchhHHHH
Confidence 35789999999998864321 11 222 22234689999999999998865431 0111112223
Q ss_pred HHHhhcc--eE------------------Ee-eecccCceeEEEEeHHHHHHHHHHHHH---------HHHHHHHHHHhh
Q 041209 65 LRRLQTT--TI------------------EI-DSLYEGIDFYATITRARFEELNMDLFR---------KCMEPVEKCLRD 114 (412)
Q Consensus 65 ~~~l~~~--~i------------------~i-~~~~~~~~~~~~itr~efe~~~~~~~~---------~~~~~i~~~l~~ 114 (412)
...+++. .+ .. ..+.+ ...+.++.+.| .+++.+++ .+...|.+++..
T Consensus 204 ~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd--~~~i~~~~er~-~~~E~lF~p~~~~~~~~~i~~~i~~~i~~ 280 (371)
T cd00012 204 VRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPD--GRTIKVGNERF-RAPEILFNPSLIGSEQVGISEAIYSSINK 280 (371)
T ss_pred HHHHHHhheeecCCHHHHHHhhhccCCccceeEECCC--CeEEEEChHHh-hChHhcCChhhcCCCcCCHHHHHHHHHHh
Confidence 3333330 00 00 01112 22456665544 34444444 556677777766
Q ss_pred cC--CCCCccceEEEecCCcCcHHHHHHHHHhhCC---------CcccccCCCchhHHhHHHHHHHH
Q 041209 115 SK--IDKSQVHDVVLVGGSTRIPKVQQLLQDFFNG---------KELCKSINPDEAVAYGAAVQAAI 170 (412)
Q Consensus 115 a~--~~~~~id~V~LvGGssriP~V~~~l~~~f~~---------~~~~~~~~pd~aVA~GAa~~a~~ 170 (412)
.. +...-++.|+|+||+|++|.+.+.|.+.+.. ..+....+|..++-+||+++|..
T Consensus 281 ~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 281 CDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred CCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 53 2333467899999999999999999888731 12334568899999999999865
No 35
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=97.33 E-value=0.00011 Score=73.21 Aligned_cols=163 Identities=19% Similarity=0.238 Sum_probs=89.7
Q ss_pred cccchhHHHHHHhcccCCC------CC---------eEE-EecCCCCCchHHHHHHHHHHHHHHHHhhccCCCcccHHHH
Q 041209 2 RIINEPTAAAIAYGLDNKA------SR---------TVK-ATAGDTHLGGEDFDNRLVNHFVAEFKRKHKKDISGNARAL 65 (412)
Q Consensus 2 ~li~EPtAAAl~y~~~~~~------~~---------~Vl-a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (412)
-++++|.+|+++++..... .. .++ .......+||+++|+.|.+++...- ............
T Consensus 128 ~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~---~~~~~~~~~~~~ 204 (373)
T smart00268 128 YIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRDLTDYLKELLSERG---YQFNSSAEFEIV 204 (373)
T ss_pred EEeccHHHHHHhCCCCEEEEEecCCCcceEEEEECCEEchhhheeccCcHHHHHHHHHHHHHhcC---CCCCcHHHHHHH
Confidence 4789999999988743221 11 222 1122358999999999998886610 001111112222
Q ss_pred HHhhcc----------------------eEEe-eecccCceeEEEEeHHHHHHHHHHHHH---------HHHHHHHHHHh
Q 041209 66 RRLQTT----------------------TIEI-DSLYEGIDFYATITRARFEELNMDLFR---------KCMEPVEKCLR 113 (412)
Q Consensus 66 ~~l~~~----------------------~i~i-~~~~~~~~~~~~itr~efe~~~~~~~~---------~~~~~i~~~l~ 113 (412)
+.+++. .... ..+.++.. +.+..+.| .+++.+++ .+.+.|.+++.
T Consensus 205 ~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lpdg~~--~~~~~er~-~~~E~lf~p~~~~~~~~~i~~~i~~~i~ 281 (373)
T smart00268 205 REIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELPDGNT--IKVGNERF-RIPEILFKPELIGLEQKGIHELVYESIQ 281 (373)
T ss_pred HHhhhheeeecCChHHHHHHhhhcccccccceeEECCCCCE--EEEChHHe-eCchhcCCchhcCCCcCCHHHHHHHHHH
Confidence 222220 0000 01112222 33433333 33333332 45666777776
Q ss_pred hcC--CCCCccceEEEecCCcCcHHHHHHHHHhhCC-------CcccccCCCchhHHhHHHHHHHH
Q 041209 114 DSK--IDKSQVHDVVLVGGSTRIPKVQQLLQDFFNG-------KELCKSINPDEAVAYGAAVQAAI 170 (412)
Q Consensus 114 ~a~--~~~~~id~V~LvGGssriP~V~~~l~~~f~~-------~~~~~~~~pd~aVA~GAa~~a~~ 170 (412)
.+. +...-.+.|+|+||+|++|.+.+.|.+.+.. ..+....++..++=.||+++|..
T Consensus 282 ~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 282 KCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred hCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccCc
Confidence 543 2222346699999999999999999887621 12333446668888898888754
No 36
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=97.24 E-value=0.00075 Score=60.86 Aligned_cols=72 Identities=25% Similarity=0.428 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc----CCCCCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHH
Q 041209 94 EELNMDLFRKCMEPVEKCLRDS----KIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAA 169 (412)
Q Consensus 94 e~~~~~~~~~~~~~i~~~l~~a----~~~~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~ 169 (412)
.++++-+++.+.-.++..++.. +. .++.|.++||.++.|.+.+.+.+.| +.++... +..++.|+|||+.|+
T Consensus 121 ~~~~rAv~Egia~~~~~~~~~l~~~~~~---~~~~i~~~GG~~~n~~~~q~~Advl-~~~V~~~-~~~e~~a~GaA~~A~ 195 (198)
T PF02782_consen 121 ADLARAVLEGIAFSLRQILEELEELTGI---PIRRIRVSGGGAKNPLWMQILADVL-GRPVVRP-EVEEASALGAALLAA 195 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS---CESEEEEESGGGGSHHHHHHHHHHH-TSEEEEE-SSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHhhhhccccccc---cceeeEeccccccChHHHHHHHHHh-CCceEeC-CCCchHHHHHHHHHH
Confidence 3334444544444444443332 43 3789999999999999999999999 7777655 449999999999997
Q ss_pred H
Q 041209 170 I 170 (412)
Q Consensus 170 ~ 170 (412)
.
T Consensus 196 ~ 196 (198)
T PF02782_consen 196 V 196 (198)
T ss_dssp H
T ss_pred h
Confidence 4
No 37
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=97.24 E-value=0.0012 Score=65.21 Aligned_cols=75 Identities=20% Similarity=0.316 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh--cCCCCCccceEEEecCCcCcHHHHHHHHHhhCCCccc---------ccC-------
Q 041209 93 FEELNMDLFRKCMEPVEKCLRD--SKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELC---------KSI------- 154 (412)
Q Consensus 93 fe~~~~~~~~~~~~~i~~~l~~--a~~~~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~---------~~~------- 154 (412)
..+++.+.++++..-|++.++- +......|+.|+|+||++++|.+.+.|++.+ +.++. ...
T Consensus 244 ~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l-~~~v~~~~p~~~~~~~~~~~~~~~ 322 (340)
T PF11104_consen 244 DQDALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEEL-GIPVEVINPFKNIKLDPKINSEYL 322 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHH-TSEEEE--GGGGSB--TTS-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHH-CCceEEcChHHhCccCcccChhhh
Confidence 3455666666666666666552 2233457999999999999999999999999 43221 111
Q ss_pred ---CCchhHHhHHHHHH
Q 041209 155 ---NPDEAVAYGAAVQA 168 (412)
Q Consensus 155 ---~pd~aVA~GAa~~a 168 (412)
.|..+||.|.|+..
T Consensus 323 ~~~~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 323 QEDAPQFAVALGLALRG 339 (340)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhhcC
Confidence 25578899988753
No 38
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=97.23 E-value=0.00054 Score=68.80 Aligned_cols=166 Identities=20% Similarity=0.254 Sum_probs=95.7
Q ss_pred cccchhHHHHHHhcccCCC------CC---------eEEE-ecCCCCCchHHHHHHHHHHHHHHH-Hh--hcc-------
Q 041209 2 RIINEPTAAAIAYGLDNKA------SR---------TVKA-TAGDTHLGGEDFDNRLVNHFVAEF-KR--KHK------- 55 (412)
Q Consensus 2 ~li~EPtAAAl~y~~~~~~------~~---------~Vla-~~gd~~lGG~d~D~~l~~~~~~~~-~~--~~~------- 55 (412)
.++++|.+|+++++..... .. .++. ......+||++++..|.+.+..+. .. .+.
T Consensus 127 ~~~~~~~~a~~~~g~~tglVVD~G~~~t~v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~ 206 (393)
T PF00022_consen 127 YFIPSPLLALYASGRTTGLVVDIGYSSTSVVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPV 206 (393)
T ss_dssp EEEEHHHHHHHHTTBSSEEEEEESSS-EEEEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC
T ss_pred eeeecccccccccccccccccccceeeeeeeeeeeccccccccccccccHHHHHHHHHHHHHhhcccccccccccccccc
Confidence 4788999999988876542 11 2221 112367999999999998888741 10 000
Q ss_pred ----CCCcccHHHHHHhhc--------------------ceEEeeecccCceeEEEEeHHHHHHHHHHHHH---------
Q 041209 56 ----KDISGNARALRRLQT--------------------TTIEIDSLYEGIDFYATITRARFEELNMDLFR--------- 102 (412)
Q Consensus 56 ----~~~~~~~~~~~~l~~--------------------~~i~i~~~~~~~~~~~~itr~efe~~~~~~~~--------- 102 (412)
............++. ..... .+.++. .+.+..+.| .+.+.+++
T Consensus 207 ~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~-~lPdg~--~i~~~~er~-~~~E~LF~p~~~~~~~~ 282 (393)
T PF00022_consen 207 EGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSY-ELPDGQ--TIILGKERF-RIPEILFNPSLIGIDSA 282 (393)
T ss_dssp -TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEE-E-TTSS--EEEESTHHH-HHHHTTTSGGGGTSSST
T ss_pred ccccccchhhhccchhccchhhhcccccccccccccccccceec-cccccc--ccccccccc-ccccccccccccccccc
Confidence 001111222233332 00111 111222 566776655 44455443
Q ss_pred -------HHHHHHHHHHhhcCCCC--CccceEEEecCCcCcHHHHHHHHHhhCC-------CcccccC-CCchhHHhHHH
Q 041209 103 -------KCMEPVEKCLRDSKIDK--SQVHDVVLVGGSTRIPKVQQLLQDFFNG-------KELCKSI-NPDEAVAYGAA 165 (412)
Q Consensus 103 -------~~~~~i~~~l~~a~~~~--~~id~V~LvGGssriP~V~~~l~~~f~~-------~~~~~~~-~pd~aVA~GAa 165 (412)
.+..+|..++....+.. .-.+.|+|+||+|++|.+.+.|.+.+.. .++.... +|..++=+||+
T Consensus 283 ~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggs 362 (393)
T PF00022_consen 283 SEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGS 362 (393)
T ss_dssp S---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHH
T ss_pred ccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccce
Confidence 35566777776654322 2256799999999999999999887622 2334444 78999999999
Q ss_pred HHHHHH
Q 041209 166 VQAAIL 171 (412)
Q Consensus 166 ~~a~~l 171 (412)
++|..-
T Consensus 363 ilasl~ 368 (393)
T PF00022_consen 363 ILASLS 368 (393)
T ss_dssp HHHTSG
T ss_pred eeeccc
Confidence 998643
No 39
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.08 E-value=0.0023 Score=61.06 Aligned_cols=47 Identities=26% Similarity=0.379 Sum_probs=41.3
Q ss_pred eEEEecCCcCcHHHHHHHHHhhCCCccc-ccCCCchhHHhHHHHHHHHH
Q 041209 124 DVVLVGGSTRIPKVQQLLQDFFNGKELC-KSINPDEAVAYGAAVQAAIL 171 (412)
Q Consensus 124 ~V~LvGGssriP~V~~~l~~~f~~~~~~-~~~~pd~aVA~GAa~~a~~l 171 (412)
.|+|+||.++.|.+++.+++.+ +.++. .+.+|..+-|+|||++|...
T Consensus 242 ~v~~~GGva~N~~l~~al~~~L-g~~v~~~p~~p~~~GAlGAAL~A~~~ 289 (293)
T TIGR03192 242 GFFITGGIAKNPGVVKRIERIL-GIKAVDTKIDSQIAGALGAALFGYTL 289 (293)
T ss_pred CEEEECcccccHHHHHHHHHHh-CCCceeCCCCccHHHHHHHHHHHHHH
Confidence 5899999999999999999999 66665 56689999999999999643
No 40
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=96.97 E-value=0.0022 Score=60.29 Aligned_cols=68 Identities=22% Similarity=0.364 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCccc-eEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHH
Q 041209 94 EELNMDLFRKCMEPVEKCLRDSKIDKSQVH-DVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQ 167 (412)
Q Consensus 94 e~~~~~~~~~~~~~i~~~l~~a~~~~~~id-~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~ 167 (412)
++++..+++.+...+.+.+.... ++ .|+|.||.++.|.+.+.+++.+ +.++..+.+|..+.|+|||++
T Consensus 180 ~di~~~~~~~va~~i~~~~~~~~-----~~~~Vvl~GGva~n~~l~~~l~~~l-g~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 180 EDILAGVYESIAERVAEMLQRLK-----IEAPIVFTGGVSKNKGLVKALEKKL-GMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC-----CCCCEEEECccccCHHHHHHHHHHh-CCcEEcCCCccHHHHHHHHhC
Confidence 45566666666666666654443 34 7999999999999999999999 788888889999999999973
No 41
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=96.89 E-value=0.012 Score=57.60 Aligned_cols=150 Identities=15% Similarity=0.210 Sum_probs=85.9
Q ss_pred CcccchhHHHHHHhcccCC----C-CC--------------------eEEEecCCCCCchHHHHHHHHHHHHHHHHhhcc
Q 041209 1 MRIINEPTAAAIAYGLDNK----A-SR--------------------TVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHK 55 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~----~-~~--------------------~Vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~ 55 (412)
|.+++||.+|.+.|..+.. . +. -+...++....|-.++-+.|.+.+.+++ +
T Consensus 142 V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~~----g 217 (320)
T TIGR03739 142 VLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKDI----G 217 (320)
T ss_pred EEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhhc----C
Confidence 4678999999888754321 1 11 2334455566787777777777766654 3
Q ss_pred CCCcccHHHHHH-hhcce-EEeeecccCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcC
Q 041209 56 KDISGNARALRR-LQTTT-IEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTR 133 (412)
Q Consensus 56 ~~~~~~~~~~~~-l~~~~-i~i~~~~~~~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssr 133 (412)
.+.......+.. |+.-. +.+ .+.. +.|+ +.++ ..+..++++..-+.+.+ + ...+++.|+|+||++.
T Consensus 218 ~~~~~~~~~i~~~l~~g~~~~~----~gk~--~di~-~~~~-~~~~~~~~~v~~i~~~~---~-~~~~~~~Iil~GGGa~ 285 (320)
T TIGR03739 218 TPAYRDIDRIDLALRTGKQPRI----YQKP--VDIK-RCLE-LAETVAQQAVSTMMTWI---G-APESIQNIVLVGGGAF 285 (320)
T ss_pred CCCccCHHHHHHHHHhCCceee----ccee--cCch-HHHH-HHHHHHHHHHHHHHHhc---c-cCCcccEEEEeCCcHH
Confidence 331112223333 33211 111 1111 2232 2222 33344444433333333 1 1345899999999996
Q ss_pred cHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHH
Q 041209 134 IPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQA 168 (412)
Q Consensus 134 iP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a 168 (412)
++++.|++.||...+....||..|.|+|-..++
T Consensus 286 --ll~~~l~~~f~~~~i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 286 --LFKKAVKAAFPKHRIVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred --HHHHHHHHHCCCCeeEecCCcHHHHHHHHHHhh
Confidence 678999999976555556789999999987765
No 42
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=96.69 E-value=0.0064 Score=57.24 Aligned_cols=45 Identities=22% Similarity=0.154 Sum_probs=37.9
Q ss_pred eEEEecCCcCcHHHHHHHHHhhCCCc----ccccCCCchhHHhHHHHHH
Q 041209 124 DVVLVGGSTRIPKVQQLLQDFFNGKE----LCKSINPDEAVAYGAAVQA 168 (412)
Q Consensus 124 ~V~LvGGssriP~V~~~l~~~f~~~~----~~~~~~pd~aVA~GAa~~a 168 (412)
.|+|+||.++.|.+.+.+++.+++.+ +..+.+|..+-|+|||++|
T Consensus 214 ~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 214 TVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred cEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 59999999999999999999885333 4456688899999999975
No 43
>PRK15027 xylulokinase; Provisional
Probab=96.65 E-value=0.0056 Score=63.37 Aligned_cols=82 Identities=22% Similarity=0.237 Sum_probs=58.2
Q ss_pred EEeHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHH
Q 041209 87 TITRARFEELN-MDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAA 165 (412)
Q Consensus 87 ~itr~efe~~~-~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa 165 (412)
.-+|.+|-..+ +.+.-.+...++ .+++.+. .++.|.++||.++.+...+++.+.| +.++....+.+++.|+|||
T Consensus 355 ~~~~~~l~rAvlEgia~~~~~~~~-~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~GaA 429 (484)
T PRK15027 355 QHGPNELARAVLEGVGYALADGMD-VVHACGI---KPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAA 429 (484)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-HHHHcCC---CccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHHHH
Confidence 33566665543 333333333333 3444443 3688999999999999999999999 8888666577778999999
Q ss_pred HHHHHHhC
Q 041209 166 VQAAILSG 173 (412)
Q Consensus 166 ~~a~~l~~ 173 (412)
++|+.-.|
T Consensus 430 ~lA~~~~G 437 (484)
T PRK15027 430 RLAQIAAN 437 (484)
T ss_pred HHHHHhcC
Confidence 99987653
No 44
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=96.61 E-value=0.0068 Score=60.22 Aligned_cols=45 Identities=33% Similarity=0.426 Sum_probs=42.3
Q ss_pred eEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHH
Q 041209 124 DVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAA 169 (412)
Q Consensus 124 ~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~ 169 (412)
.|+|+||.++.|.+.+.+++.+ +.++..+.+|..+-|+|||++|.
T Consensus 358 ~VvftGGva~N~gvv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 358 PVILVGGTSLIEGLVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred cEEEECChhhhHHHHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 5999999999999999999999 78888899999999999999984
No 45
>PLN02669 xylulokinase
Probab=96.57 E-value=0.0082 Score=63.16 Aligned_cols=71 Identities=14% Similarity=0.254 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHH
Q 041209 97 NMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAI 170 (412)
Q Consensus 97 ~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~ 170 (412)
++-+++.+.=-++..++..+.. ..++.|+++||+|+.|.+.+.+.+.| +.++... +..++.|+|||+.|+.
T Consensus 422 ~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVl-g~pV~~~-~~~ea~alGAA~~A~~ 492 (556)
T PLN02669 422 VRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIF-GCDVYTV-QRPDSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHc-CCCeEec-CCCCchHHHHHHHHHH
Confidence 3334444433333333333322 34789999999999999999999999 6677554 4457889999999986
No 46
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.56 E-value=0.0076 Score=63.30 Aligned_cols=82 Identities=18% Similarity=0.215 Sum_probs=61.3
Q ss_pred EEeHHHHHHHHHHHHHHHHHHHHHHHh---hcCCCCCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhH
Q 041209 87 TITRARFEELNMDLFRKCMEPVEKCLR---DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYG 163 (412)
Q Consensus 87 ~itr~efe~~~~~~~~~~~~~i~~~l~---~a~~~~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~G 163 (412)
.=+|..+..++.-+++-+.=.++.+++ +.+. .++.|.++||.++.|...+++.+.+ +.++.+. +..++.|+|
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~-~~~e~~alG 483 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGH---TIKSIFMSGGQCQNPLLMQLIADAC-DMPVLIP-YVNEAVLHG 483 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CccEEEEecCcccCHHHHHHHHHHH-CCeeEec-ChhHHHHHH
Confidence 335666666677777766655554443 3343 4788999999999999999999999 7888666 445688999
Q ss_pred HHHHHHHHhC
Q 041209 164 AAVQAAILSG 173 (412)
Q Consensus 164 Aa~~a~~l~~ 173 (412)
||++|+.-.|
T Consensus 484 aA~lA~~~~G 493 (541)
T TIGR01315 484 AAMLGAKAAG 493 (541)
T ss_pred HHHHHHHhcC
Confidence 9999987653
No 47
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=96.50 E-value=0.0086 Score=59.11 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=40.9
Q ss_pred ceEEEecCCcCcHHHHHHHHHhhC----CCcccccCCCchhHHhHHHHHH
Q 041209 123 HDVVLVGGSTRIPKVQQLLQDFFN----GKELCKSINPDEAVAYGAAVQA 168 (412)
Q Consensus 123 d~V~LvGGssriP~V~~~l~~~f~----~~~~~~~~~pd~aVA~GAa~~a 168 (412)
+.|+|+||.++.+.+.+.|++.++ +.++..+.+|..+-|+|||++|
T Consensus 383 ~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 383 DQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 469999999999999999999994 4567788899999999999975
No 48
>PTZ00281 actin; Provisional
Probab=96.47 E-value=0.0015 Score=65.26 Aligned_cols=163 Identities=17% Similarity=0.240 Sum_probs=89.9
Q ss_pred cccchhHHHHHHhcccCCC--C---C-----------eEEEecCCCCCchHHHHHHHHHHHHHHHHhhccCCCcccHHHH
Q 041209 2 RIINEPTAAAIAYGLDNKA--S---R-----------TVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHKKDISGNARAL 65 (412)
Q Consensus 2 ~li~EPtAAAl~y~~~~~~--~---~-----------~Vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (412)
-+++.|.+|+++++..... + . .+....-...+||+++++.|.+.+..+. +..........+
T Consensus 134 ~~~~~~~ls~ya~g~~tglVVDiG~~~t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~---~~~~~~~~~~~~ 210 (376)
T PTZ00281 134 YVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERG---YSFTTTAEREIV 210 (376)
T ss_pred EeeccHHHHHHhcCCceEEEEECCCceEEEEEEEecccchhheeeccCcHHHHHHHHHHHHHhcC---CCCCcHHHHHHH
Confidence 3577888888877653321 1 0 1212222467999999999988775421 111111122233
Q ss_pred HHhhcc--eE-----------------Eee-ecccCceeEEEEeHHHHHHHHHHHHH---------HHHHHHHHHHhhcC
Q 041209 66 RRLQTT--TI-----------------EID-SLYEGIDFYATITRARFEELNMDLFR---------KCMEPVEKCLRDSK 116 (412)
Q Consensus 66 ~~l~~~--~i-----------------~i~-~~~~~~~~~~~itr~efe~~~~~~~~---------~~~~~i~~~l~~a~ 116 (412)
..+++. .+ ... .+.++. .++|..+.| .+.+.+++ .+..+|.+++..+.
T Consensus 211 ~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LPdg~--~i~i~~er~-~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~ 287 (376)
T PTZ00281 211 RDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQ--VITIGNERF-RCPEALFQPSFLGMESAGIHETTYNSIMKCD 287 (376)
T ss_pred HHHHHhcEEecCCchHHHHhhhcCcccceeEECCCCC--EEEeeHHHe-eCcccccChhhcCCCCCCHHHHHHHHHHhCC
Confidence 333330 01 011 111222 356665544 33343443 23455666665543
Q ss_pred CC--CCccceEEEecCCcCcHHHHHHHHHhhC----C---CcccccCCCchhHHhHHHHHHHH
Q 041209 117 ID--KSQVHDVVLVGGSTRIPKVQQLLQDFFN----G---KELCKSINPDEAVAYGAAVQAAI 170 (412)
Q Consensus 117 ~~--~~~id~V~LvGGssriP~V~~~l~~~f~----~---~~~~~~~~pd~aVA~GAa~~a~~ 170 (412)
.+ +.-.+.|+|+||+|.+|.+.+.|...+. . .++..+.++..++=+|++++|..
T Consensus 288 ~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl 350 (376)
T PTZ00281 288 VDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASL 350 (376)
T ss_pred hhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccCc
Confidence 21 2224579999999999999998887662 1 12334456778899999998853
No 49
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=96.37 E-value=0.015 Score=59.90 Aligned_cols=50 Identities=20% Similarity=0.227 Sum_probs=43.1
Q ss_pred cceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhC
Q 041209 122 VHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 173 (412)
Q Consensus 122 id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~ 173 (412)
++.|.++||.++.|...+++.+.| +.++...- ..++.++|||+.|+.-.|
T Consensus 394 ~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~-~~e~~~lGaA~~a~~a~G 443 (465)
T TIGR02628 394 ASELLLVGGGSKNTLWNQIRANML-DIPVKVVD-DAETTVAGAAMFGFYGVG 443 (465)
T ss_pred cceEEEecCccCCHHHHHHhhhhc-CCeeEecc-CCcchHHHHHHHHHHhcC
Confidence 688999999999999999999999 77886554 457889999999987654
No 50
>PTZ00452 actin; Provisional
Probab=96.31 E-value=0.0055 Score=61.27 Aligned_cols=161 Identities=14% Similarity=0.204 Sum_probs=88.7
Q ss_pred cccchhHHHHHHhcccCCC--C---C-----------eEEEecCCCCCchHHHHHHHHHHHHHHHHhhccCCCc--ccHH
Q 041209 2 RIINEPTAAAIAYGLDNKA--S---R-----------TVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHKKDIS--GNAR 63 (412)
Q Consensus 2 ~li~EPtAAAl~y~~~~~~--~---~-----------~Vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~--~~~~ 63 (412)
-+.+.|.+++++++..... + . -+........+||+++++.|.+.+..+ +..+. ....
T Consensus 133 ~~~~~~~lslya~g~~tglVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~-----~~~~~~~~~~~ 207 (375)
T PTZ00452 133 YISNEAVLSLYTSGKTIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLCTDYLTQILQEL-----GYSLTEPHQRI 207 (375)
T ss_pred EEechHHHHHHHCCCceeeeecCCCCcceEEEEECCEEeccceEEeeccchHHHHHHHHHHHhc-----CCCCCCHHHHH
Confidence 3567888888887754332 1 1 122222246799999999988877432 11111 1111
Q ss_pred HHHHhhc--ce-----------------EEee-ecccCceeEEEEeHHHHHHHHHHHHHH---------HHHHHHHHHhh
Q 041209 64 ALRRLQT--TT-----------------IEID-SLYEGIDFYATITRARFEELNMDLFRK---------CMEPVEKCLRD 114 (412)
Q Consensus 64 ~~~~l~~--~~-----------------i~i~-~~~~~~~~~~~itr~efe~~~~~~~~~---------~~~~i~~~l~~ 114 (412)
..+.+++ +. .... .+.++. .+++..+.| .+.+.+++- +..++.+++..
T Consensus 208 ~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LPDg~--~i~l~~er~-~~~E~LF~P~~~g~~~~gi~~~i~~si~~ 284 (375)
T PTZ00452 208 IVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPDGN--ILTIKSQKF-RCSEILFQPKLIGLEVAGIHHLAYSSIKK 284 (375)
T ss_pred HHHHHHHHhccccCcHHHHHHHhhccCCcCceEECCCCC--EEEeehHHh-cCcccccChhhcCCCCCChhHHHHHHHHh
Confidence 2222222 00 0001 112222 356777666 344433322 34555566655
Q ss_pred cC--CCCCccceEEEecCCcCcHHHHHHHHHhhC----C-C--cccccCCCchhHHhHHHHHHHH
Q 041209 115 SK--IDKSQVHDVVLVGGSTRIPKVQQLLQDFFN----G-K--ELCKSINPDEAVAYGAAVQAAI 170 (412)
Q Consensus 115 a~--~~~~~id~V~LvGGssriP~V~~~l~~~f~----~-~--~~~~~~~pd~aVA~GAa~~a~~ 170 (412)
+. +...=.+.|+|+||+|.+|.+.+.|.+.+. . . .+....++..++=+|++++|..
T Consensus 285 c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilasl 349 (375)
T PTZ00452 285 CDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCTL 349 (375)
T ss_pred CCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcCc
Confidence 43 222335679999999999999999988662 1 1 2233345667888899998853
No 51
>PTZ00280 Actin-related protein 3; Provisional
Probab=96.27 E-value=0.013 Score=59.38 Aligned_cols=64 Identities=20% Similarity=0.244 Sum_probs=41.1
Q ss_pred ceeEEEEeHHHHHH---HHHHHH------HHHHHHHHHHHhhcCC--CCCccceEEEecCCcCcHHHHHHHHHhh
Q 041209 82 IDFYATITRARFEE---LNMDLF------RKCMEPVEKCLRDSKI--DKSQVHDVVLVGGSTRIPKVQQLLQDFF 145 (412)
Q Consensus 82 ~~~~~~itr~efe~---~~~~~~------~~~~~~i~~~l~~a~~--~~~~id~V~LvGGssriP~V~~~l~~~f 145 (412)
.+..+.|+.+.|.- +..|-+ ..+.++|.+++..+.. ..+-.+.|+|+||+|.+|.+.+.|.+.+
T Consensus 262 ~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El 336 (414)
T PTZ00280 262 KPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDV 336 (414)
T ss_pred CccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHH
Confidence 34467788776642 222311 1344566666665532 2233567999999999999999998877
No 52
>PRK04123 ribulokinase; Provisional
Probab=96.26 E-value=0.012 Score=61.94 Aligned_cols=51 Identities=29% Similarity=0.496 Sum_probs=43.4
Q ss_pred ccceEEEecCC-cCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhC
Q 041209 121 QVHDVVLVGGS-TRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 173 (412)
Q Consensus 121 ~id~V~LvGGs-sriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~ 173 (412)
.++.|.++||. ++.++..+++.+.| +.++.+. .+.++.|+|||+.|+.-.+
T Consensus 438 ~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~~~G 489 (548)
T PRK04123 438 PVEEVIAAGGIARKNPVLMQIYADVL-NRPIQVV-ASDQCPALGAAIFAAVAAG 489 (548)
T ss_pred CcceEEEeCCCcccCHHHHHHHHHhc-CCceEec-CccccchHHHHHHHHHHhc
Confidence 36889999999 99999999999999 7777554 5567889999999987653
No 53
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=96.24 E-value=0.018 Score=56.27 Aligned_cols=73 Identities=26% Similarity=0.329 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHH
Q 041209 94 EELNMDLFRKCMEPVE-KCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAIL 171 (412)
Q Consensus 94 e~~~~~~~~~~~~~i~-~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l 171 (412)
|+++..+...+..-+- ++++.-.+.+ . |+|+||.+..-.|.+++.+.+ +.++.++.+|..+=|+|||++|...
T Consensus 318 EdI~AGl~~Sv~~~v~~~~~~~~~i~~--~--iv~~GGva~n~av~~ale~~l-g~~V~vP~~~ql~GAiGAAL~a~~~ 391 (396)
T COG1924 318 EDILAGLAYSVAENVAEKVIKRVDIEE--P--IVLQGGVALNKAVVRALEDLL-GRKVIVPPYAQLMGAIGAALIAKEV 391 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCC--C--EEEECcchhhHHHHHHHHHHh-CCeeecCCccchhhHHHHHHHHhhh
Confidence 4445555554433322 2444433322 2 999999999999999999999 8999999999999999999998643
No 54
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=96.19 E-value=0.017 Score=59.55 Aligned_cols=51 Identities=33% Similarity=0.559 Sum_probs=44.2
Q ss_pred ccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhC
Q 041209 121 QVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 173 (412)
Q Consensus 121 ~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~ 173 (412)
.++.|.++||.+|.+.+.+++.+.| +.++... +..++.|+|||+.|+.-.+
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~~~-~~~e~~a~GaA~~a~~~~g 440 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIF-GTPVDVP-EGEEGPALGAAILAAWALG 440 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHh-CCceeec-CCCcchHHHHHHHHHHhcC
Confidence 3789999999999999999999999 7777655 5667899999999987664
No 55
>PRK00047 glpK glycerol kinase; Provisional
Probab=96.18 E-value=0.015 Score=60.48 Aligned_cols=50 Identities=24% Similarity=0.330 Sum_probs=43.2
Q ss_pred cceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhC
Q 041209 122 VHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 173 (412)
Q Consensus 122 id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~ 173 (412)
++.|.++||.++.|...+++.+.| +.++... ...++.|+|||+.|+.-.|
T Consensus 404 ~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~-~~~e~~a~GaA~~A~~~~G 453 (498)
T PRK00047 404 LKELRVDGGAVANNFLMQFQADIL-GVPVERP-VVAETTALGAAYLAGLAVG 453 (498)
T ss_pred CceEEEecCcccCHHHHHHHHHhh-CCeeEec-CcccchHHHHHHHHhhhcC
Confidence 688999999999999999999999 7787554 5567889999999987653
No 56
>PTZ00466 actin-like protein; Provisional
Probab=96.16 E-value=0.0054 Score=61.44 Aligned_cols=162 Identities=15% Similarity=0.174 Sum_probs=89.9
Q ss_pred cccchhHHHHHHhcccCCC--C---C----------eEE-EecCCCCCchHHHHHHHHHHHHHHHHhhccCCCcccHHHH
Q 041209 2 RIINEPTAAAIAYGLDNKA--S---R----------TVK-ATAGDTHLGGEDFDNRLVNHFVAEFKRKHKKDISGNARAL 65 (412)
Q Consensus 2 ~li~EPtAAAl~y~~~~~~--~---~----------~Vl-a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (412)
.+.+.|.+|+++++..... + . .++ .......+||+++++.|.+.+..+ .+..+........
T Consensus 139 ~~~~~~~lsl~a~g~~tglVVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~---~~~~~~~~~~~~v 215 (380)
T PTZ00466 139 FISIQAILSLYSCGKTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRDITTYLGYLLRKN---GHLFNTSAEMEVV 215 (380)
T ss_pred EEecchHHHHHhcCCceEEEEeCCCCceEEEEEECCEEeecceeEecCchhHHHHHHHHHHHhc---CCCCCcHHHHHHH
Confidence 3567888888887754321 1 0 222 222246899999999998877532 0111111122233
Q ss_pred HHhhc--ceE----------------Eeee-cccCceeEEEEeHHHHHHHHHHHHH---------HHHHHHHHHHhhcCC
Q 041209 66 RRLQT--TTI----------------EIDS-LYEGIDFYATITRARFEELNMDLFR---------KCMEPVEKCLRDSKI 117 (412)
Q Consensus 66 ~~l~~--~~i----------------~i~~-~~~~~~~~~~itr~efe~~~~~~~~---------~~~~~i~~~l~~a~~ 117 (412)
+.+++ +.+ .... +.++ ..+.|..+.| .+.+.+++ -+..+|.+++..+..
T Consensus 216 ~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~LPdg--~~i~l~~er~-~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~ 292 (380)
T PTZ00466 216 KNMKENCCYVSFNMNKEKNSSEKALTTLPYILPDG--SQILIGSERY-RAPEVLFNPSILGLEYLGLSELIVTSITRADM 292 (380)
T ss_pred HHHHHhCeEecCChHHHHhhccccccceeEECCCC--cEEEEchHHh-cCcccccCccccCCCCCCHHHHHHHHHHhCCh
Confidence 33333 001 0111 1122 2356676666 23343443 234555566555432
Q ss_pred --CCCccceEEEecCCcCcHHHHHHHHHhhCC-----C--cccccCCCchhHHhHHHHHHH
Q 041209 118 --DKSQVHDVVLVGGSTRIPKVQQLLQDFFNG-----K--ELCKSINPDEAVAYGAAVQAA 169 (412)
Q Consensus 118 --~~~~id~V~LvGGssriP~V~~~l~~~f~~-----~--~~~~~~~pd~aVA~GAa~~a~ 169 (412)
.+.-...|+|+||+|.+|.+.+.|.+.+.. . .+....++..++=+||+++|.
T Consensus 293 d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 293 DLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred hhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 222356799999999999999999887621 1 233344666788889999885
No 57
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=96.11 E-value=0.015 Score=60.32 Aligned_cols=80 Identities=20% Similarity=0.305 Sum_probs=54.9
Q ss_pred EeHHHHHHHH-HHHHHHHHHHHHHHHhhc-CCCCCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHH
Q 041209 88 ITRARFEELN-MDLFRKCMEPVEKCLRDS-KIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAA 165 (412)
Q Consensus 88 itr~efe~~~-~~~~~~~~~~i~~~l~~a-~~~~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa 165 (412)
-+|.++-..+ +.+.-.+...++. |++. +. .++.|.++||.+|.|...+++.+.| +.++... +..++.|+|||
T Consensus 368 ~~~~~l~rAvlEgia~~~~~~~~~-l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~~~-~~~e~~alGaA 441 (493)
T TIGR01311 368 TTKAHIARAALEAIAFQTRDVLEA-MEKDAGV---EITKLRVDGGMTNNNLLMQFQADIL-GVPVVRP-KVTETTALGAA 441 (493)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HHHhcCC---CCceEEEecccccCHHHHHHHHHhc-CCeeEec-CCCcchHHHHH
Confidence 3455554432 3333333333333 2322 33 3688999999999999999999999 7888654 55678899999
Q ss_pred HHHHHHhC
Q 041209 166 VQAAILSG 173 (412)
Q Consensus 166 ~~a~~l~~ 173 (412)
+.|+.-.|
T Consensus 442 ~~a~~~~G 449 (493)
T TIGR01311 442 YAAGLAVG 449 (493)
T ss_pred HHHHhhcC
Confidence 99987653
No 58
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=96.05 E-value=0.019 Score=59.78 Aligned_cols=50 Identities=28% Similarity=0.434 Sum_probs=43.3
Q ss_pred cceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhC
Q 041209 122 VHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 173 (412)
Q Consensus 122 id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~ 173 (412)
++.|.++||.++.+...+++.+.| +.++... ...++.|+|||+.|+.-.|
T Consensus 407 ~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV~~~-~~~e~~alGaAl~aa~a~G 456 (504)
T PTZ00294 407 LNSLRVDGGLTKNKLLMQFQADIL-GKDIVVP-EMAETTALGAALLAGLAVG 456 (504)
T ss_pred cceEEEecccccCHHHHHHHHHHh-CCceEec-CcccchHHHHHHHHHhhcC
Confidence 688999999999999999999999 7787655 4566889999999987654
No 59
>PRK10331 L-fuculokinase; Provisional
Probab=96.01 E-value=0.019 Score=59.15 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=43.7
Q ss_pred ccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhC
Q 041209 121 QVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 173 (412)
Q Consensus 121 ~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~ 173 (412)
.++.|.++||.++.|...+++.+.| +.++... ...++.++|||+.|+.-.|
T Consensus 389 ~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~~~-~~~e~~a~GaA~la~~~~G 439 (470)
T PRK10331 389 KASELLLVGGGSRNALWNQIKANML-DIPIKVL-DDAETTVAGAAMFGWYGVG 439 (470)
T ss_pred CCceEEEEcccccCHHHHHHHHHhc-CCeeEec-CcccchHHHHHHHHHHhcC
Confidence 3789999999999999999999999 7788655 4557889999999987653
No 60
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.86 E-value=0.026 Score=59.20 Aligned_cols=81 Identities=23% Similarity=0.265 Sum_probs=56.2
Q ss_pred EEeHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCCCccceEEEecCC-cCcHHHHHHHHHhhCCCcccccCCCchhHHhHH
Q 041209 87 TITRARFEELN-MDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGS-TRIPKVQQLLQDFFNGKELCKSINPDEAVAYGA 164 (412)
Q Consensus 87 ~itr~efe~~~-~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGs-sriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GA 164 (412)
.-+|.+|-.++ +.+.-.....++ .|++.+. .++.|.++||. ++.+...+.+.+.| +.++.+..+ .++.|+||
T Consensus 404 ~~~~~~~~RAvlEgia~~~~~~l~-~l~~~g~---~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~~-~e~~a~Ga 477 (536)
T TIGR01234 404 ATDAPLLYRALIEATAFGTRMIME-TFTDSGV---PVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVAS-DQAPALGA 477 (536)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-HHHhcCC---CcceEEEeCCccccCHHHHHHHHHhh-CCeeEeccC-CcchhHHH
Confidence 34566654443 233333333333 3344443 47899999999 99999999999999 788866644 46889999
Q ss_pred HHHHHHHhC
Q 041209 165 AVQAAILSG 173 (412)
Q Consensus 165 a~~a~~l~~ 173 (412)
|+.|+.-.|
T Consensus 478 A~lA~~~~G 486 (536)
T TIGR01234 478 AIFAAVAAG 486 (536)
T ss_pred HHHHHHHcC
Confidence 999987653
No 61
>PTZ00004 actin-2; Provisional
Probab=95.76 E-value=0.0074 Score=60.42 Aligned_cols=163 Identities=14% Similarity=0.141 Sum_probs=88.6
Q ss_pred cccchhHHHHHHhcccCCC--C----C---------eE-EEecCCCCCchHHHHHHHHHHHHHHHHhhccCCCcccHHHH
Q 041209 2 RIINEPTAAAIAYGLDNKA--S----R---------TV-KATAGDTHLGGEDFDNRLVNHFVAEFKRKHKKDISGNARAL 65 (412)
Q Consensus 2 ~li~EPtAAAl~y~~~~~~--~----~---------~V-la~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (412)
.++++|.+|+++++..... + . .+ ........+||+++++.|.+.+..+. +...........
T Consensus 134 ~~~~~~~ls~ya~g~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~---~~~~~~~~~~~~ 210 (378)
T PTZ00004 134 YVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERG---TTFTTTAEKEIV 210 (378)
T ss_pred EeeccHHHHHHhcCCceEEEEECCCCcEEEEEEECCEEeecceeeecccHHHHHHHHHHHHHhcC---CCCCcHHHHHHH
Confidence 4678889988877653321 1 0 22 22222457999999999998875431 111111112223
Q ss_pred HHhhc--ce------------------EEeee-cccCceeEEEEeHHHHH---HHHHHH------HHHHHHHHHHHHhhc
Q 041209 66 RRLQT--TT------------------IEIDS-LYEGIDFYATITRARFE---ELNMDL------FRKCMEPVEKCLRDS 115 (412)
Q Consensus 66 ~~l~~--~~------------------i~i~~-~~~~~~~~~~itr~efe---~~~~~~------~~~~~~~i~~~l~~a 115 (412)
..+++ +. ..... +.++. .+.|..+.|. -+..|- ...+.++|.+++..+
T Consensus 211 ~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~lPdg~--~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~ 288 (378)
T PTZ00004 211 RDIKEKLCYIALDFDEEMGNSAGSSDKYEESYELPDGT--IITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKC 288 (378)
T ss_pred HHHhhcceeecCCHHHHHhhhhcCccccceEEECCCCC--EEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhC
Confidence 33333 00 01111 12222 3455655442 122332 112345566666554
Q ss_pred CC--CCCccceEEEecCCcCcHHHHHHHHHhhC----C---CcccccCCCchhHHhHHHHHHH
Q 041209 116 KI--DKSQVHDVVLVGGSTRIPKVQQLLQDFFN----G---KELCKSINPDEAVAYGAAVQAA 169 (412)
Q Consensus 116 ~~--~~~~id~V~LvGGssriP~V~~~l~~~f~----~---~~~~~~~~pd~aVA~GAa~~a~ 169 (412)
.. .+.-...|+|+||+|.+|.+.+.|...+. . ..+....++..++=+||+++|.
T Consensus 289 ~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 289 DIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred ChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 32 22234679999999999999999988762 1 1233345677888889998875
No 62
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=95.66 E-value=0.043 Score=57.14 Aligned_cols=80 Identities=13% Similarity=0.113 Sum_probs=54.8
Q ss_pred eHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHH
Q 041209 89 TRARFEEL-NMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQ 167 (412)
Q Consensus 89 tr~efe~~-~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~ 167 (412)
+|.++-.. ++.+.-.+...+..+.+..+. .++.|.++||.++.+...+++.+.| +.++...- ..++.|+|||+.
T Consensus 371 ~~~~l~rAvlEgia~~~~~~~~~~~~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~-~~e~~a~GaA~l 445 (505)
T TIGR01314 371 KKEHMIRAALEGVIYNLYTVALALVEVMGD---PLNMIQATGGFASSEVWRQMMSDIF-EQEIVVPE-SYESSCLGACIL 445 (505)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecCcccCHHHHHHHHHHc-CCeeEecC-CCCcchHHHHHH
Confidence 45554332 233333333333433332343 4789999999999999999999999 77886554 446889999999
Q ss_pred HHHHhC
Q 041209 168 AAILSG 173 (412)
Q Consensus 168 a~~l~~ 173 (412)
|+.-.|
T Consensus 446 a~~~~G 451 (505)
T TIGR01314 446 GLKALG 451 (505)
T ss_pred HHHhcC
Confidence 987653
No 63
>PLN02295 glycerol kinase
Probab=95.65 E-value=0.035 Score=57.86 Aligned_cols=51 Identities=25% Similarity=0.342 Sum_probs=43.7
Q ss_pred ccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhC
Q 041209 121 QVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 173 (412)
Q Consensus 121 ~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~ 173 (412)
.++.|.++||.++.|...+++.+.| +.++... +..++.|+|||+.|+.-.|
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~~A~~~~G 462 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLL-GSPVVRP-ADIETTALGAAYAAGLAVG 462 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhc-CCceEec-CccccHHHHHHHHHHhhcC
Confidence 4788999999999999999999999 7788544 5568889999999987664
No 64
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=95.60 E-value=0.033 Score=57.17 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=42.7
Q ss_pred ccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhC
Q 041209 121 QVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 173 (412)
Q Consensus 121 ~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~ 173 (412)
.++.|.++||.++.++..+.+.+.+ +.++... . .++.|+|||+.|+.-.|
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~-~-~e~~a~GaA~~a~~~~G 436 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADAC-GIRVIAG-P-VEASTLGNIGVQLMALD 436 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHh-CCceEcC-C-chHHHHHHHHHHHHhcC
Confidence 3788999999999999999999999 7788543 3 67999999999987654
No 65
>PRK13317 pantothenate kinase; Provisional
Probab=95.58 E-value=0.046 Score=52.24 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=42.1
Q ss_pred cceEEEec-CCcCcHHHHHHHHHhhC--CCcccccCCCchhHHhHHHHHHH
Q 041209 122 VHDVVLVG-GSTRIPKVQQLLQDFFN--GKELCKSINPDEAVAYGAAVQAA 169 (412)
Q Consensus 122 id~V~LvG-GssriP~V~~~l~~~f~--~~~~~~~~~pd~aVA~GAa~~a~ 169 (412)
+..|+++| |-++.|.+++.+.+.+. +.++..+.+|..+.|+|||++|.
T Consensus 223 ~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 223 IENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 56899999 79999999999999873 56777788999999999999875
No 66
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=95.53 E-value=0.031 Score=55.09 Aligned_cols=51 Identities=10% Similarity=0.222 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHhhc--CCCCCccceEEEecCCcCcHHHHHHHHHhhC
Q 041209 96 LNMDLFRKCMEPVEKCLRDS--KIDKSQVHDVVLVGGSTRIPKVQQLLQDFFN 146 (412)
Q Consensus 96 ~~~~~~~~~~~~i~~~l~~a--~~~~~~id~V~LvGGssriP~V~~~l~~~f~ 146 (412)
++++.++++..-|.+.+.-. ......++.|+|+||++++|.+.+.+++.|+
T Consensus 255 ~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 255 VLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHC
Confidence 45566666666666665421 2223458999999999999999999999993
No 67
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=95.49 E-value=0.016 Score=56.56 Aligned_cols=147 Identities=13% Similarity=0.198 Sum_probs=79.3
Q ss_pred CcccchhHHHHHHhcccCCC-CC---------------------eEEEecCCCCCchHHHHHHHHHHHHHHHHhhccCCC
Q 041209 1 MRIINEPTAAAIAYGLDNKA-SR---------------------TVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHKKDI 58 (412)
Q Consensus 1 v~li~EPtAAAl~y~~~~~~-~~---------------------~Vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~ 58 (412)
|.+++||.||.+.+...... ++ .+-...|+..+|-.++-..|.+.+.. .. ...
T Consensus 143 V~V~PQ~~~A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~-~~----~~~ 217 (318)
T PF06406_consen 143 VEVFPQSVGAVFDALMDLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRS-AG----IDT 217 (318)
T ss_dssp EEEEESSHHHHHHHHHTS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT---S----BHH
T ss_pred EEEEcccHHHHHHHHHhhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHH-hc----CCC
Confidence 35789999999988655332 22 22234455678888877777766654 11 111
Q ss_pred cccHHHHHHhhc---ceEEeeecccCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcH
Q 041209 59 SGNARALRRLQT---TTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIP 135 (412)
Q Consensus 59 ~~~~~~~~~l~~---~~i~i~~~~~~~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP 135 (412)
+ ......+-. ....+.....+.+ .++++.++++..++++.+-+.+.+.+ ..+++.|+||||++ .
T Consensus 218 s--~~~~~~ii~~~~~~~~~~~~i~~~~-----~~~~v~~~i~~~~~~l~~~i~~~~~~----~~~~~~I~~vGGGA--~ 284 (318)
T PF06406_consen 218 S--ELQIDDIIRNRKDKGYLRQVINDED-----VIDDVSEVIEEAVEELINRILRELGD----FSDIDRIFFVGGGA--I 284 (318)
T ss_dssp H--HHHHHHHHHTTT-HHHHHHHSSSHH-----HHHHHHHHHHHHHHHHHHHHHHHHTT----S-S-SEEEEESTTH--H
T ss_pred c--HHHHHHHHHhhhccceecccccchh-----hHHHHHHHHHHHHHHHHHHHHHHHhh----hccCCeEEEECCcH--H
Confidence 1 111111100 0000000011111 23445555555555555555554432 34688999999998 6
Q ss_pred HHHHHHHHhhC--CCcccccCCCchhHHhHHH
Q 041209 136 KVQQLLQDFFN--GKELCKSINPDEAVAYGAA 165 (412)
Q Consensus 136 ~V~~~l~~~f~--~~~~~~~~~pd~aVA~GAa 165 (412)
++.+.|++.|+ ...+...-||..|-|.|-+
T Consensus 285 ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 285 LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 78899999984 2456677799999999864
No 68
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=95.38 E-value=0.045 Score=57.22 Aligned_cols=50 Identities=28% Similarity=0.398 Sum_probs=43.1
Q ss_pred cceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhC
Q 041209 122 VHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 173 (412)
Q Consensus 122 id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~ 173 (412)
++.|.++||.++.|...+++.+.| +.++.... ..++.++|||+.|+.-.|
T Consensus 410 ~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~-~~e~~alGaA~lA~~~~G 459 (520)
T PRK10939 410 PSSLVFAGGGSKGKLWSQILADVT-GLPVKVPV-VKEATALGCAIAAGVGAG 459 (520)
T ss_pred CcEEEEeCCcccCHHHHHHHHHhc-CCeeEEec-ccCchHHHHHHHHHHHhC
Confidence 788999999999999999999999 78886654 446889999999987653
No 69
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=95.34 E-value=0.044 Score=56.52 Aligned_cols=50 Identities=20% Similarity=0.210 Sum_probs=42.5
Q ss_pred ccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhC
Q 041209 121 QVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 173 (412)
Q Consensus 121 ~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~ 173 (412)
.++.|.++||.+|.|+..+++.+.+ +.++... . .++.++|||+.|+.-.|
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~-~-~ea~alGaa~~a~~a~G 424 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADAC-GIRVIAG-P-VEASTLGNIGIQLMTLD 424 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHh-CCCeeeC-C-hhHHHHHHHHHHHHHcC
Confidence 3688999999999999999999999 7788543 3 37999999999987654
No 70
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=95.30 E-value=0.072 Score=53.16 Aligned_cols=56 Identities=21% Similarity=0.371 Sum_probs=47.1
Q ss_pred hcCCCCCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHH
Q 041209 114 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAIL 171 (412)
Q Consensus 114 ~a~~~~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l 171 (412)
..+........|+.|||.||-..|-+.|.+.| +.++..- +..++.|+|+|+.|+.-
T Consensus 435 ~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf-~apVy~~-~~~~sa~lG~A~ra~ya 490 (545)
T KOG2531|consen 435 PLGFKSNPPTRILVTGGASRNEAILQIIADVF-GAPVYTI-EGPNSAALGGAYRAAYA 490 (545)
T ss_pred cccCCCCCCceEEEecCccccHHHHHHHHHHh-CCCeEee-cCCchhhHHHHHHHHHH
Confidence 34555556789999999999999999999999 7777654 88899999999997753
No 71
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=95.30 E-value=0.062 Score=55.08 Aligned_cols=72 Identities=26% Similarity=0.367 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhCC
Q 041209 98 MDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGE 174 (412)
Q Consensus 98 ~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~~ 174 (412)
+-+.-++...++.+-++.+ ..|+.+.+.||.|+-|.+-+.+.+.+ +.++..+.+++. |++|||+.|+..++.
T Consensus 394 eai~fqtr~Il~am~~~~~---~~i~~L~~~GG~s~N~ll~Q~~ADi~-g~pv~~p~~~e~-~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 394 EAIAFQTREILEAMERDGG---HPISTLRVCGGLSKNPLLMQLQADIL-GLPVVRPQDVEA-VALGAAMLAGAASGK 465 (516)
T ss_pred HHHHHHHHHHHHHHHHhcC---CCcceeeeccccccCHHHHHHHHHHh-CCccccccchhH-HHHHHHHHHHhhcCC
Confidence 3444444445554444443 34778999999999999999999999 788888888877 999999999988843
No 72
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=94.45 E-value=0.21 Score=52.02 Aligned_cols=81 Identities=26% Similarity=0.252 Sum_probs=50.1
Q ss_pred EEeHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHH
Q 041209 87 TITRARFEELNMDLFRKCMEPVEKCLRDS-KIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAA 165 (412)
Q Consensus 87 ~itr~efe~~~~~~~~~~~~~i~~~l~~a-~~~~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa 165 (412)
.-+|.+|-+.+-.-+--.....-+.|.+. +. .++.|.++||++|.++..+++.+.| +.++... ...|+.+.|+|
T Consensus 369 ~~~~~~l~ravlEgva~~l~~~~~~l~~~~g~---~~~~i~~~GGgars~~w~Qi~Ad~~-g~~v~~~-~~~e~~a~g~A 443 (502)
T COG1070 369 PHTRAHLARAVLEGVAFALADGLEALEELGGK---PPSRVRVVGGGARSPLWLQILADAL-GLPVVVP-EVEEAGALGGA 443 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CccEEEEECCcccCHHHHHHHHHHc-CCeeEec-CcccchHHHHH
Confidence 34666665543222222222222334443 43 3568999999999999999999999 7777655 44566666666
Q ss_pred HHHHHHh
Q 041209 166 VQAAILS 172 (412)
Q Consensus 166 ~~a~~l~ 172 (412)
+.++...
T Consensus 444 ~~~~~~~ 450 (502)
T COG1070 444 ALAAAAL 450 (502)
T ss_pred HHHHHHh
Confidence 5555544
No 73
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=93.52 E-value=0.16 Score=45.54 Aligned_cols=66 Identities=21% Similarity=0.334 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHH
Q 041209 96 LNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQ 167 (412)
Q Consensus 96 ~~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~ 167 (412)
.+.|.++++.+.+++-++..+ +..++|+||+|.-|.+.+.+++.| ..++..+..|-...-+|-|..
T Consensus 206 ~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l-~l~v~~P~~p~y~TPLgIA~s 271 (277)
T COG4820 206 VVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQL-ALQVHLPQHPLYMTPLGIASS 271 (277)
T ss_pred chhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHh-ccccccCCCcceechhhhhhc
Confidence 367899999999998887766 567899999999999999999999 788888888877777776653
No 74
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=92.91 E-value=0.87 Score=49.03 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=17.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC
Q 041209 380 DVPMGGGAEMPGGGHGKAETGGAS 403 (412)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~ 403 (412)
.+.||||++||||-|||-|+++|.
T Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~ 638 (653)
T PTZ00009 615 AAGGGMPGGMPGGMPGGMPGGAGP 638 (653)
T ss_pred hccCCCCCCCCCCCCCCCCCCCCC
Confidence 666888999997666666666553
No 75
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=92.56 E-value=0.63 Score=47.78 Aligned_cols=62 Identities=29% Similarity=0.463 Sum_probs=51.0
Q ss_pred HHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhC
Q 041209 107 PVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 173 (412)
Q Consensus 107 ~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~ 173 (412)
.|-+++++.++ .|+.|++.||-.+-|++.+.+.+.. +.++... ..++++++|+|+.|+.-.+
T Consensus 420 ~Iie~~~~~g~---~Id~l~~sGG~~KN~llmql~aDvt-g~~v~i~-~s~~a~llGsAm~~avAag 481 (544)
T COG1069 420 AIIETFEDQGI---AIDTLFASGGIRKNPLLMQLYADVT-GRPVVIP-ASDQAVLLGAAMFAAVAAG 481 (544)
T ss_pred HHHHHHHHcCC---eeeEEEecCCcccCHHHHHHHHHhc-CCeEEee-cccchhhhHHHHHHHHHhc
Confidence 44555666665 4799999999999999999999999 6666555 7789999999999987663
No 76
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=92.55 E-value=0.54 Score=44.59 Aligned_cols=66 Identities=26% Similarity=0.325 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhh----CCCcccccCCCchhHHhHHHHHH
Q 041209 100 LFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFF----NGKELCKSINPDEAVAYGAAVQA 168 (412)
Q Consensus 100 ~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f----~~~~~~~~~~pd~aVA~GAa~~a 168 (412)
..+.+...+..++.+...... .|+|+||..+.+.+.+.+.+.+ +..++.....|....|.||+++|
T Consensus 202 a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 202 AADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 333344445555555443321 2999999999977777664433 34445566789999999999987
No 77
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=91.29 E-value=0.58 Score=47.82 Aligned_cols=77 Identities=21% Similarity=0.323 Sum_probs=57.0
Q ss_pred EEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhhC-------CCcccccCCCch
Q 041209 86 ATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFN-------GKELCKSINPDE 158 (412)
Q Consensus 86 ~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f~-------~~~~~~~~~pd~ 158 (412)
+-+...-+.++++-++.+...-..+.| +..|+|+||+|.+|.+.+.|.+.|- ...+....||-.
T Consensus 532 iG~dQaGl~Ei~~~il~r~p~~eq~~l---------V~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~L 602 (645)
T KOG0681|consen 532 IGIDQAGLAEIMDTILRRYPHDEQEKL---------VSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVL 602 (645)
T ss_pred ccchhhhHHHHHHHHHHhCchhhhHhh---------hhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcch
Confidence 345666666666666666544444443 7899999999999999999988763 234556779999
Q ss_pred hHHhHHHHHHHHH
Q 041209 159 AVAYGAAVQAAIL 171 (412)
Q Consensus 159 aVA~GAa~~a~~l 171 (412)
.+=+||+.+|+..
T Consensus 603 DAW~GA~~~a~n~ 615 (645)
T KOG0681|consen 603 DAWRGASAWAANP 615 (645)
T ss_pred hhhhhhHHhhcCc
Confidence 9999999998753
No 78
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=90.50 E-value=1.6 Score=44.39 Aligned_cols=81 Identities=23% Similarity=0.273 Sum_probs=59.9
Q ss_pred EeHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHH
Q 041209 88 ITRARFEEL-NMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAV 166 (412)
Q Consensus 88 itr~efe~~-~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~ 166 (412)
.|++.|-+. ++.+.-++.++++.+=++++. .+..+-+=||.|+..++-+...+.+ +.++.++ .-.|..|+|||+
T Consensus 371 t~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADil-g~~V~Rp-~~~EtTAlGaA~ 445 (499)
T COG0554 371 TTKAHIARATLESIAYQTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADIL-GVPVERP-VVLETTALGAAY 445 (499)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHh-CCeeecc-ccchhhHHHHHH
Confidence 455555443 234444455556655556664 4788899999999999999999999 7777766 556888999999
Q ss_pred HHHHHhC
Q 041209 167 QAAILSG 173 (412)
Q Consensus 167 ~a~~l~~ 173 (412)
.|+.-.|
T Consensus 446 lAGla~G 452 (499)
T COG0554 446 LAGLAVG 452 (499)
T ss_pred HHhhhhC
Confidence 9998774
No 79
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=88.14 E-value=2.3 Score=42.30 Aligned_cols=76 Identities=24% Similarity=0.244 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhhCCCcccc----cCCCchhHHhHHHHHHH
Q 041209 94 EELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCK----SINPDEAVAYGAAVQAA 169 (412)
Q Consensus 94 e~~~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~----~~~pd~aVA~GAa~~a~ 169 (412)
++++.-+.+=+...|.+.++.... .++.|++.||+.+-|.+-+.|++.+++.++.. .++|+.-=|.+-|++|.
T Consensus 260 ~D~~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La~ 336 (364)
T PF03702_consen 260 EDILATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLAY 336 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHHH
Confidence 344455555555555555555432 27899999999999999999999997645532 24566555666677776
Q ss_pred HHh
Q 041209 170 ILS 172 (412)
Q Consensus 170 ~l~ 172 (412)
..-
T Consensus 337 ~~~ 339 (364)
T PF03702_consen 337 RRL 339 (364)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 80
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=85.75 E-value=4.8 Score=38.62 Aligned_cols=49 Identities=22% Similarity=0.317 Sum_probs=39.1
Q ss_pred ceEEEecC--CcCcH-HHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhCC
Q 041209 123 HDVVLVGG--STRIP-KVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGE 174 (412)
Q Consensus 123 d~V~LvGG--ssriP-~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~~ 174 (412)
..|+|.|- ++|.| .|++.|++.| ..++ ..+.. ++.|.|+|+.|.-+.+.
T Consensus 264 ~~IvLSGs~g~~r~~~~v~~~I~~~L-~~~V-~~L~~-ksAA~G~AiIA~dI~gG 315 (326)
T TIGR03281 264 AGVVLAGSGGTLREPINFSGKIKRVL-SCKV-LVLDS-ESAAIGLALIAEDIFSG 315 (326)
T ss_pred CcEEEeCcchhccCchHHHHHHHHHh-CCCe-EEecc-hhhhhhHHHHHHHHhCC
Confidence 47999986 99999 9999999999 4333 23343 88999999999887753
No 81
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=84.69 E-value=5.3 Score=39.69 Aligned_cols=82 Identities=18% Similarity=0.126 Sum_probs=57.5
Q ss_pred EEEeHHHHHHHHHHHHHHHH-HHHHHHHhhcCCCCCccce-EEEecCCcCcHHHHHHHHHhhCCCcccccC-CCchhHHh
Q 041209 86 ATITRARFEELNMDLFRKCM-EPVEKCLRDSKIDKSQVHD-VVLVGGSTRIPKVQQLLQDFFNGKELCKSI-NPDEAVAY 162 (412)
Q Consensus 86 ~~itr~efe~~~~~~~~~~~-~~i~~~l~~a~~~~~~id~-V~LvGGssriP~V~~~l~~~f~~~~~~~~~-~pd~aVA~ 162 (412)
..-.+.++...++..++++. ..++.++++.+ ++. |.|.||...--..-..|.+..+-..+...+ --|..+|+
T Consensus 131 ~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~ai 205 (360)
T PF02543_consen 131 LTQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAI 205 (360)
T ss_dssp EESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHH
Confidence 45678889888898888875 56667777766 455 999999988777777777764334554444 44899999
Q ss_pred HHHHHHHHHh
Q 041209 163 GAAVQAAILS 172 (412)
Q Consensus 163 GAa~~a~~l~ 172 (412)
|||+++....
T Consensus 206 GaA~~~~~~~ 215 (360)
T PF02543_consen 206 GAALYAWHEL 215 (360)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998655
No 82
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=84.65 E-value=1.8 Score=41.37 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=39.1
Q ss_pred CccceEEEecC-CcCcHHHHHHHHHhhC--CCcccccCCCchhHHhHHHH
Q 041209 120 SQVHDVVLVGG-STRIPKVQQLLQDFFN--GKELCKSINPDEAVAYGAAV 166 (412)
Q Consensus 120 ~~id~V~LvGG-ssriP~V~~~l~~~f~--~~~~~~~~~pd~aVA~GAa~ 166 (412)
..+..|+++|| -+..|.+++.+...+. +.++....|+...+|+||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 34788999999 6679999999988762 45667777999999999986
No 83
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=83.97 E-value=7 Score=43.44 Aligned_cols=85 Identities=16% Similarity=0.258 Sum_probs=60.3
Q ss_pred ceeEEEEeHHHHHHHHH---HHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhhCC-----------
Q 041209 82 IDFYATITRARFEELNM---DLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNG----------- 147 (412)
Q Consensus 82 ~~~~~~itr~efe~~~~---~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f~~----------- 147 (412)
.++.+.|+...+...+- -.+..+...+-+++.. -+.|.++|+|--||+|.||..+++..+-
T Consensus 729 ldv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~-----Y~CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y 803 (1002)
T PF07520_consen 729 LDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHH-----YDCDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGY 803 (1002)
T ss_pred ecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHH-----hCCCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCe
Confidence 34567889888888764 4444444444444433 3468999999999999999999998741
Q ss_pred --------CcccccCCCchhHHhHHHHHHHHH
Q 041209 148 --------KELCKSINPDEAVAYGAAVQAAIL 171 (412)
Q Consensus 148 --------~~~~~~~~pd~aVA~GAa~~a~~l 171 (412)
.+..+--||.+.||.||.+.+...
T Consensus 804 ~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~ 835 (1002)
T PF07520_consen 804 RTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAE 835 (1002)
T ss_pred eecccccCCCCCcCCCchHHHHHHHHHHHHhc
Confidence 112244589999999998776544
No 84
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=82.32 E-value=1.7 Score=44.43 Aligned_cols=48 Identities=25% Similarity=0.429 Sum_probs=39.5
Q ss_pred cceEEEecCCcCcHHHHHHHHHhhC----C---CcccccCCCchhHHhHHHHHHH
Q 041209 122 VHDVVLVGGSTRIPKVQQLLQDFFN----G---KELCKSINPDEAVAYGAAVQAA 169 (412)
Q Consensus 122 id~V~LvGGssriP~V~~~l~~~f~----~---~~~~~~~~pd~aVA~GAa~~a~ 169 (412)
...|+|+||+|.+|.+.+.|.+.+. . ..+..+.+|...+=+||+++|.
T Consensus 363 ~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~~W~GaSila~ 417 (444)
T COG5277 363 YSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLGASILAS 417 (444)
T ss_pred hhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCchhhccccchhhhcc
Confidence 5689999999999999999988763 1 2345566888999999999986
No 85
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.60 E-value=5.3 Score=38.74 Aligned_cols=67 Identities=13% Similarity=0.236 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHhh--cCCCCCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHH
Q 041209 97 NMDLFRKCMEPVEKCLRD--SKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAA 165 (412)
Q Consensus 97 ~~~~~~~~~~~i~~~l~~--a~~~~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa 165 (412)
..|+++.+..-|.+.|.- +.-...+|+.|+|.||+.++-.+.+.+.+.+ +.+. .-.||....+..+.
T Consensus 261 l~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl-~~~t-~vanPf~~~~~~~~ 329 (354)
T COG4972 261 LRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRL-SIPT-EVANPFAYMALNVK 329 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHh-CCCe-EeeCHHHHHhhhhc
Confidence 344444444445544432 1223567999999999999999999999998 3332 23466444444333
No 86
>PRK00976 hypothetical protein; Provisional
Probab=79.84 E-value=8.7 Score=37.45 Aligned_cols=50 Identities=22% Similarity=0.318 Sum_probs=38.7
Q ss_pred ccceEEEecCCcCcH--HHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhC
Q 041209 121 QVHDVVLVGGSTRIP--KVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 173 (412)
Q Consensus 121 ~id~V~LvGGssriP--~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~ 173 (412)
+.+.|+|-||-|+++ .+.+.+++.+. .. ...-...+-++|||+.|....+
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~-~~--~a~LG~dAGaiGAA~iA~~i~~ 314 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLD-KK--VLVLGKESAAIGLALIARDIFN 314 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhc-cc--ccccCCchHHHHHHHHHHHHhC
Confidence 367899999999998 78888888873 22 2233468999999999987754
No 87
>PRK03011 butyrate kinase; Provisional
Probab=79.37 E-value=3.8 Score=40.70 Aligned_cols=47 Identities=21% Similarity=0.237 Sum_probs=36.3
Q ss_pred ccceEEEecCCcCcHHHHHHHHHhhC---CCcccccCCCchhHHhHHHHH
Q 041209 121 QVHDVVLVGGSTRIPKVQQLLQDFFN---GKELCKSINPDEAVAYGAAVQ 167 (412)
Q Consensus 121 ~id~V~LvGGssriP~V~~~l~~~f~---~~~~~~~~~pd~aVA~GAa~~ 167 (412)
++|.|+|.||-+..+.+++.|.+.+. ...+....+-++|.+.||+-.
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 57999999999999999998888763 334445556678999998743
No 88
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=78.67 E-value=1.8 Score=42.87 Aligned_cols=55 Identities=20% Similarity=0.304 Sum_probs=35.5
Q ss_pred cCCCCCccceEEEecCCcCcHHHHHHHHHhhCC-----C--cccccCCCchhHHhHHHHHHH
Q 041209 115 SKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNG-----K--ELCKSINPDEAVAYGAAVQAA 169 (412)
Q Consensus 115 a~~~~~~id~V~LvGGssriP~V~~~l~~~f~~-----~--~~~~~~~pd~aVA~GAa~~a~ 169 (412)
..+.+.-...|+|+||+|.+|.+.+.+.+.+.. . ++..+.+...+|=+|+++.|.
T Consensus 284 ~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~~ikv~~pp~r~~s~WlGgSIlas 345 (372)
T KOG0676|consen 284 IDLRKDLYENIVLSGGTTMFPGLADRLQKELQALAPSTIKIKVIAPPERKYSAWLGGSILAS 345 (372)
T ss_pred hhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcCCCCcceEEecCcccccceecCceeEee
Confidence 344444456799999999999999988886521 1 222333333556677776664
No 89
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=77.83 E-value=19 Score=35.73 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=31.8
Q ss_pred cceEEEecCCcCcHHHHHHHHHhh----CCCccc-----ccCCCchhHHhHHHHHHH
Q 041209 122 VHDVVLVGGSTRIPKVQQLLQDFF----NGKELC-----KSINPDEAVAYGAAVQAA 169 (412)
Q Consensus 122 id~V~LvGGssriP~V~~~l~~~f----~~~~~~-----~~~~pd~aVA~GAa~~a~ 169 (412)
...|+++||.|.||.+.+.|.+.+ |+.++. .++.-..++=+|+.++|.
T Consensus 342 ~~nVivtGGtSliqG~s~RL~~ELs~~~P~srlki~as~~t~eR~~~~WlGGSILAS 398 (426)
T KOG0679|consen 342 LGNVIVTGGTSLIQGFSERLNKELSKRAPSSRLKIIASGHTVERRFQSWLGGSILAS 398 (426)
T ss_pred hccEEEecCcchhhhHHHHHHHHHHHhCCcceEEEEecCceeeehhhhhhhhHHHhc
Confidence 467999999999999998887765 333221 122334556667666663
No 90
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=77.40 E-value=8.4 Score=37.75 Aligned_cols=55 Identities=25% Similarity=0.392 Sum_probs=39.2
Q ss_pred CccceEEEecCCcCcHHHHHHHHHhhCCCc--ccccCCC----chhHHhHHHHHHHHHhCC
Q 041209 120 SQVHDVVLVGGSTRIPKVQQLLQDFFNGKE--LCKSINP----DEAVAYGAAVQAAILSGE 174 (412)
Q Consensus 120 ~~id~V~LvGGssriP~V~~~l~~~f~~~~--~~~~~~p----d~aVA~GAa~~a~~l~~~ 174 (412)
.+++.|+|.|-.+|+|-+.+.+...|...- ....+.+ -...|+|||+.|.-+.|.
T Consensus 259 ~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKeaA~GaAiIA~glaGG 319 (343)
T PF07318_consen 259 PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEAAQGAAIIANGLAGG 319 (343)
T ss_pred CCCCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhhhhhHHHHhhhhhcc
Confidence 357889999999999999888888773211 1122222 245899999999888753
No 91
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=75.68 E-value=14 Score=36.66 Aligned_cols=70 Identities=19% Similarity=0.270 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhhCCCcccc----cCCCchhHHhHHHHHHHHH
Q 041209 98 MDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCK----SINPDEAVAYGAAVQAAIL 171 (412)
Q Consensus 98 ~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~----~~~pd~aVA~GAa~~a~~l 171 (412)
.-+.+=+...|.+.+.... ...+.|++.||+++-|.+.+.|++.++ .++.. .++++.-=|..-|++|...
T Consensus 266 aTlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~-~~v~~~~~~G~~~da~EA~aFA~La~~~ 339 (365)
T PRK09585 266 ATLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLP-TEVATTDALGIDGDAKEALAFAWLAVRT 339 (365)
T ss_pred HHHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcC-CcccCHHHcCCChhHHHHHHHHHHHHHH
Confidence 3333344444555554332 224689999999999999999999995 33322 2456655566667777654
No 92
>PRK09343 prefoldin subunit beta; Provisional
Probab=73.67 E-value=50 Score=27.25 Aligned_cols=83 Identities=20% Similarity=0.159 Sum_probs=53.8
Q ss_pred cHHHHHHHHHHhhHHHHHHhhhhhcchhh----hhcCCCHHhHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHH
Q 041209 291 DEEIKKKVEAKNSLENYAYNMSNTVRDEK----FAGKLDPADKQKIEKAIDEAIEWLDGNQLVEVDELEDKLKELKGFCN 366 (412)
Q Consensus 291 D~~~~~~~~a~N~lE~~i~~~r~~l~~~~----~~~~~~~~e~~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~ 366 (412)
+.........+|+.+..+-.+...=++.. ....+-..++..+...+++-.+.+.. ....++.+.+.|+..+.
T Consensus 27 ~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~----~ik~lekq~~~l~~~l~ 102 (121)
T PRK09343 27 LQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLEL----RSRTLEKQEKKLREKLK 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 33333344445555555444443322211 12223346788888888888888874 78889999999999999
Q ss_pred HHHHHHHhcCC
Q 041209 367 PIIAKMYEGGA 377 (412)
Q Consensus 367 ~i~~r~~e~~~ 377 (412)
.....+.+.-+
T Consensus 103 e~q~~l~~ll~ 113 (121)
T PRK09343 103 ELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 93
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=72.15 E-value=8.4 Score=41.87 Aligned_cols=49 Identities=24% Similarity=0.365 Sum_probs=37.9
Q ss_pred ccceEEEecCCcCcHHHHHHHHHhhC--CCccccc---CCCchhHHhHHHHHHH
Q 041209 121 QVHDVVLVGGSTRIPKVQQLLQDFFN--GKELCKS---INPDEAVAYGAAVQAA 169 (412)
Q Consensus 121 ~id~V~LvGGssriP~V~~~l~~~f~--~~~~~~~---~~pd~aVA~GAa~~a~ 169 (412)
.++.|+|.||..+-..+++.+.+.+. +.++..+ .-.|.++++|.|++|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 36789999999999999999998773 2333332 2348999999998874
No 94
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=70.41 E-value=20 Score=36.72 Aligned_cols=97 Identities=14% Similarity=0.269 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCccce--EEEecCCcCcHHHHHHHHHhh--CCCccc--ccCCCchhHHhHHHHHHHHHhCC
Q 041209 101 FRKCMEPVEKCLRDSKIDKSQVHD--VVLVGGSTRIPKVQQLLQDFF--NGKELC--KSINPDEAVAYGAAVQAAILSGE 174 (412)
Q Consensus 101 ~~~~~~~i~~~l~~a~~~~~~id~--V~LvGGssriP~V~~~l~~~f--~~~~~~--~~~~pd~aVA~GAa~~a~~l~~~ 174 (412)
.+.+...|++-.+.|++.+++|+. ++++|.++++.-+++.++++= -+.-+. ..++-+..++ |-|--++.++.
T Consensus 65 ~~~i~~~V~~ey~~Agi~~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse- 142 (475)
T PRK10719 65 EAAIKELIEEEYQKAGIAPESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE- 142 (475)
T ss_pred HHHHHHHHHHHHHHcCCCHHHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh-
Confidence 356677888999999999998875 999999999999999998732 122221 2333333333 55554555552
Q ss_pred CCccccceEEEeccCccccccccCCCCCeEEEEEeeccc
Q 041209 175 GNKKVQDLLLLDVTPLSLGIETAGDNRPSVLIQVYEGER 213 (412)
Q Consensus 175 ~~~~~~~~~~~dv~~~s~gi~~~~d~q~~i~i~i~eG~~ 213 (412)
.+...+.+.|+ +-....+.+|++..
T Consensus 143 --Eke~gVa~IDI------------GgGTT~iaVf~~G~ 167 (475)
T PRK10719 143 --ERNTRVLNIDI------------GGGTANYALFDAGK 167 (475)
T ss_pred --hccCceEEEEe------------CCCceEEEEEECCE
Confidence 33455667776 33455677776543
No 95
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=69.33 E-value=5.6 Score=37.74 Aligned_cols=50 Identities=28% Similarity=0.319 Sum_probs=36.2
Q ss_pred CCccceEEEecCCcCcHHHHHHHHHhhCC-------CcccccCCCchhHHhHHHHHH
Q 041209 119 KSQVHDVVLVGGSTRIPKVQQLLQDFFNG-------KELCKSINPDEAVAYGAAVQA 168 (412)
Q Consensus 119 ~~~id~V~LvGGssriP~V~~~l~~~f~~-------~~~~~~~~pd~aVA~GAa~~a 168 (412)
..+|+.|+|||||+.=.-|-+++.+.+.. ..+.-..-|..|||.|.++.-
T Consensus 273 iR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRNAVATGLvlsy 329 (332)
T PF08841_consen 273 IRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRNAVATGLVLSY 329 (332)
T ss_dssp CCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTSTHHHHHHHHHH
T ss_pred cccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchHHHHHHHHHhh
Confidence 35799999999999987788888887732 244455678999999998743
No 96
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=62.41 E-value=12 Score=30.54 Aligned_cols=46 Identities=13% Similarity=0.252 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhcCCCCCccceEEEecCCcCc--HHHHHHHHHhhCC
Q 041209 102 RKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRI--PKVQQLLQDFFNG 147 (412)
Q Consensus 102 ~~~~~~i~~~l~~a~~~~~~id~V~LvGGssri--P~V~~~l~~~f~~ 147 (412)
......++++|+++++++++|+.|..-|-++.. +.=.+.|.+.|+.
T Consensus 25 ~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~ 72 (119)
T PF02801_consen 25 AALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGD 72 (119)
T ss_dssp HHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcc
Confidence 344567999999999999999999999988776 4445678888854
No 97
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=56.22 E-value=7.7 Score=36.34 Aligned_cols=143 Identities=22% Similarity=0.250 Sum_probs=74.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHh-hccCCCcccHHHHHHhh-------------c-ceEEeeecccCceeEEEEeHHHHHH
Q 041209 31 THLGGEDFDNRLVNHFVAEFKR-KHKKDISGNARALRRLQ-------------T-TTIEIDSLYEGIDFYATITRARFEE 95 (412)
Q Consensus 31 ~~lGG~d~D~~l~~~~~~~~~~-~~~~~~~~~~~~~~~l~-------------~-~~i~i~~~~~~~~~~~~itr~efe~ 95 (412)
..+.|+|+++-|++.+..+--. .+..|+..-.....+|. . +++-+++..-.....+.+--+.||.
T Consensus 179 ldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~YtLPDGRvIkvG~ERFeA 258 (389)
T KOG0677|consen 179 LDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALETTVLVESYTLPDGRVIKVGGERFEA 258 (389)
T ss_pred ccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhhheeeeeeeecCCCcEEEecceeccC
Confidence 5678999999999988764211 11112211111111111 1 2333332211112335666666653
Q ss_pred ---HHHHHHHH-----HHHHHHHHHhhcCCCC--CccceEEEecCCcCcHHHHHHHHHhhC---------C---------
Q 041209 96 ---LNMDLFRK-----CMEPVEKCLRDSKIDK--SQVHDVVLVGGSTRIPKVQQLLQDFFN---------G--------- 147 (412)
Q Consensus 96 ---~~~~~~~~-----~~~~i~~~l~~a~~~~--~~id~V~LvGGssriP~V~~~l~~~f~---------~--------- 147 (412)
+.+|-+-. +.+++-.++..+.++. +--..|+|.||||.-|.+-..|++.+. +
T Consensus 259 PE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rVL~~d~~~l~Kfk 338 (389)
T KOG0677|consen 259 PEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLKGDTDKLKKFK 338 (389)
T ss_pred chhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHHHcCChhhhhheE
Confidence 44543211 2234444444444322 223469999999999988777665431 1
Q ss_pred CcccccCCCchhHHhHHHHHHHHHhC
Q 041209 148 KELCKSINPDEAVAYGAAVQAAILSG 173 (412)
Q Consensus 148 ~~~~~~~~pd~aVA~GAa~~a~~l~~ 173 (412)
..+..++.-...|-+|.|.+|.++..
T Consensus 339 iRIEdPPrRKhMVflGGAVLA~imkD 364 (389)
T KOG0677|consen 339 IRIEDPPRRKHMVFLGGAVLAGIMKD 364 (389)
T ss_pred EeccCCCccceeEEEchHHHHHHhcC
Confidence 12223333458899999999988764
No 98
>PLN02377 3-ketoacyl-CoA synthase
Probab=52.95 E-value=46 Score=34.66 Aligned_cols=72 Identities=7% Similarity=0.084 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCccceEEE-ecCCcCcHHHHHHHHHhhCCC-c-ccccCCCchhHHhHHHH
Q 041209 95 ELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVL-VGGSTRIPKVQQLLQDFFNGK-E-LCKSINPDEAVAYGAAV 166 (412)
Q Consensus 95 ~~~~~~~~~~~~~i~~~l~~a~~~~~~id~V~L-vGGssriP~V~~~l~~~f~~~-~-~~~~~~pd~aVA~GAa~ 166 (412)
...+....=+...++++|+++++++++||.|+. +.+....|.+.-+|.+.++-. . ....++..-|.+.-.++
T Consensus 167 ~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LGlr~~v~afdL~gmGCsggl~aL 241 (502)
T PLN02377 167 AAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAV 241 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhCCCCCCeEEecccchhhHHHHHH
Confidence 333333444556788999999999999999876 334445899999999999422 1 23344433444433333
No 99
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=52.58 E-value=30 Score=33.36 Aligned_cols=49 Identities=18% Similarity=0.181 Sum_probs=29.6
Q ss_pred ccceEEEecCCcCc-HHHHHHHHHhhC---------CCcccccCCCchhHHhHHHHHHH
Q 041209 121 QVHDVVLVGGSTRI-PKVQQLLQDFFN---------GKELCKSINPDEAVAYGAAVQAA 169 (412)
Q Consensus 121 ~id~V~LvGGssri-P~V~~~l~~~f~---------~~~~~~~~~pd~aVA~GAa~~a~ 169 (412)
+.+.|+|-|+.+.. |.+.+.+++.+. ..++..+.-.+.++++|||..+.
T Consensus 251 dP~~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~Gaa~~~~ 309 (318)
T TIGR00744 251 NPSAIVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQLGNDAGLVGAADLAR 309 (318)
T ss_pred CCCEEEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEcccCCchhhHHHHHHHH
Confidence 34678887776653 555555554441 11233444456789999998864
No 100
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=52.22 E-value=64 Score=30.63 Aligned_cols=69 Identities=22% Similarity=0.237 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhhCC------CcccccCCCchhHHhHHHHHHH
Q 041209 100 LFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNG------KELCKSINPDEAVAYGAAVQAA 169 (412)
Q Consensus 100 ~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f~~------~~~~~~~~pd~aVA~GAa~~a~ 169 (412)
+++++...+-.++...-. .-+.+.|+|-|+.+..+.+-+.+++.+.. .++..+...+.+.++|||.++.
T Consensus 213 ~~~~~~~~la~~l~~l~~-~~dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 213 LINRSAQAIARLIADLKA-TLDCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred HHHHHHHHHHHHHHHHHH-HhCCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 444444444444433211 12347888888877666555666655521 1223333456888999998763
No 101
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=52.07 E-value=53 Score=25.67 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHhcCCC
Q 041209 354 LEDKLKELKGFCNPIIAKMYEGGAS 378 (412)
Q Consensus 354 ~~~~~~~L~~~~~~i~~r~~e~~~~ 378 (412)
++--=.+|...++.|..||......
T Consensus 41 ieI~d~eL~~~FeeIa~RFrk~~~~ 65 (92)
T PF07820_consen 41 IEISDAELQAAFEEIAARFRKGKKK 65 (92)
T ss_pred ccCCHHHHHHHHHHHHHHHhccccc
Confidence 3344467888999999999986653
No 102
>PRK09557 fructokinase; Reviewed
Probab=50.84 E-value=31 Score=33.01 Aligned_cols=48 Identities=21% Similarity=0.273 Sum_probs=29.0
Q ss_pred ccceEEEecCCcCcHHHHHHHHHhhC--------CCcccccCCCchhHHhHHHHHH
Q 041209 121 QVHDVVLVGGSTRIPKVQQLLQDFFN--------GKELCKSINPDEAVAYGAAVQA 168 (412)
Q Consensus 121 ~id~V~LvGGssriP~V~~~l~~~f~--------~~~~~~~~~pd~aVA~GAa~~a 168 (412)
+.+.|+|-||.++.+.+-+.+++.+. ..++..+.-.+.+.++|||+.+
T Consensus 244 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 244 DPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred CCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 35678887777766655555554431 1123333445678899999764
No 103
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=50.05 E-value=1.5e+02 Score=27.72 Aligned_cols=51 Identities=22% Similarity=0.365 Sum_probs=37.8
Q ss_pred cceEEEecCCcCcHHHHHHHHHhhCCCcccccCC----CchhHHhHHHHHHHHHhC
Q 041209 122 VHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSIN----PDEAVAYGAAVQAAILSG 173 (412)
Q Consensus 122 id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~----pd~aVA~GAa~~a~~l~~ 173 (412)
|+.|+++||..+--.--+.++..| .+.+.+..+ |-.++++|--++..+.|.
T Consensus 112 vNGviftGGwak~~dY~~vvkkif-nk~le~nDaGehFPvyg~CLGFE~lsmiISq 166 (340)
T KOG1559|consen 112 VNGVIFTGGWAKRGDYFEVVKKIF-NKVLERNDAGEHFPVYGICLGFELLSMIISQ 166 (340)
T ss_pred hceeEecCcccccccHHHHHHHHH-HHHHhccCCccccchhhhhhhHHHHHHHHhc
Confidence 789999999999888888888888 444433322 346778888888877773
No 104
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=49.92 E-value=71 Score=29.28 Aligned_cols=52 Identities=15% Similarity=0.166 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhcCCCCCccceEEEecCCcC--cHHHHHHHHHhhCC-CcccccCC
Q 041209 104 CMEPVEKCLRDSKIDKSQVHDVVLVGGSTR--IPKVQQLLQDFFNG-KELCKSIN 155 (412)
Q Consensus 104 ~~~~i~~~l~~a~~~~~~id~V~LvGGssr--iP~V~~~l~~~f~~-~~~~~~~~ 155 (412)
....++++|+++++++++|+.|++...+.- .|.+...|...++- ..+...++
T Consensus 11 ~~~A~~~al~~ag~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg~~~~~~~~i~ 65 (254)
T cd00327 11 GFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGISGGPAYSVN 65 (254)
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEEECCCCccccHHHHHHHHHhCCCCCCcceec
Confidence 356688899999999999999887654333 68888889999853 23334444
No 105
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=49.80 E-value=32 Score=33.02 Aligned_cols=43 Identities=12% Similarity=0.217 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhcCCCCCccceEE-EecCCcCcHHHHHHHHHhhC
Q 041209 104 CMEPVEKCLRDSKIDKSQVHDVV-LVGGSTRIPKVQQLLQDFFN 146 (412)
Q Consensus 104 ~~~~i~~~l~~a~~~~~~id~V~-LvGGssriP~V~~~l~~~f~ 146 (412)
+...++++|++++++|.+||.++ -+...+-.|.+..+|.+.|+
T Consensus 87 ~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~ 130 (290)
T PF08392_consen 87 IFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYG 130 (290)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhC
Confidence 35678899999999999999854 45677889999999999994
No 106
>PRK09604 UGMP family protein; Validated
Probab=49.79 E-value=42 Score=32.89 Aligned_cols=52 Identities=21% Similarity=0.257 Sum_probs=37.9
Q ss_pred ccceEEEecCCcCcHHHHHHHHHhhC--CCcccccC---CCchhHHhHHHHHHHHHh
Q 041209 121 QVHDVVLVGGSTRIPKVQQLLQDFFN--GKELCKSI---NPDEAVAYGAAVQAAILS 172 (412)
Q Consensus 121 ~id~V~LvGGssriP~V~~~l~~~f~--~~~~~~~~---~pd~aVA~GAa~~a~~l~ 172 (412)
.++.|+|.||...-.++++.|.+.+. +..+..+. -.|.++++|++=+-....
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~ 310 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKA 310 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHc
Confidence 36789999999999999999999873 22333332 348999999985544444
No 107
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.67 E-value=1.2e+02 Score=28.43 Aligned_cols=108 Identities=19% Similarity=0.313 Sum_probs=0.0
Q ss_pred ceEEeeecccCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEE-----------------------
Q 041209 71 TTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVL----------------------- 127 (412)
Q Consensus 71 ~~i~i~~~~~~~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~~~~id~V~L----------------------- 127 (412)
+.+.+....++.+..+++-|+++....+.-+ ++..=+++++..++||-|-|
T Consensus 13 sgi~~ai~d~e~~~~Fklgrae~~~~~ek~~------L~~l~de~~i~l~eidlialtYsMGDais~ikpiekve~rGl~ 86 (332)
T COG4020 13 SGIKFAIYDGEKDPEFKLGRAELRKVAEKSL------LRELEDEARIALEEIDLIALTYSMGDAISEIKPIEKVEGRGLR 86 (332)
T ss_pred cceEEEEEcCCCCceEEechhhhhhhhHHHH------HHHhhHhhCCccccceEEEEeeccccchhhcccHHHhcCCcee
Q ss_pred --------ecCCcCc---------------------HHHHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhCCCCcc
Q 041209 128 --------VGGSTRI---------------------PKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNKK 178 (412)
Q Consensus 128 --------vGGssri---------------------P~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~~~~~~ 178 (412)
+||.+|+ |++.+.++ .| ..--... -+|-|++|..+++.
T Consensus 87 si~GAGk~~GgGtrv~dei~esgipa~liPGlHr~~~clD~rfr-vf-SH~aSpE-------Klgiay~a~~~~g~---- 153 (332)
T COG4020 87 SIEGAGKKTGGGTRVYDEISESGIPAYLIPGLHRGLPCLDERFR-VF-SHVASPE-------KLGIAYLAYLLSGS---- 153 (332)
T ss_pred eccCcccccCCceehHHHHHhcCCCeeecccccCCCcccChhhh-hh-hccCCHH-------HhhHHHHHHHHcCc----
Q ss_pred ccceEEEeccCccccccccC
Q 041209 179 VQDLLLLDVTPLSLGIETAG 198 (412)
Q Consensus 179 ~~~~~~~dv~~~s~gi~~~~ 198 (412)
+++++.|+++-++.+-+.+
T Consensus 154 -ed~VvsDiSSNTVtllvkd 172 (332)
T COG4020 154 -EDFVVSDISSNTVTLLVKD 172 (332)
T ss_pred -cceEEEeccCCeEEEEEEc
No 108
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=49.59 E-value=25 Score=34.14 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=21.8
Q ss_pred cceEEEecCCcCcHHHHHHHHHhh
Q 041209 122 VHDVVLVGGSTRIPKVQQLLQDFF 145 (412)
Q Consensus 122 id~V~LvGGssriP~V~~~l~~~f 145 (412)
+..|+++||++..|.+++.|...+
T Consensus 318 ~~NIv~iGGn~~fPgF~~RL~~El 341 (400)
T KOG0680|consen 318 LENIVCIGGNSNFPGFRQRLAREL 341 (400)
T ss_pred HhcEEEecCccCCcchHHHHHHHH
Confidence 567999999999999999998876
No 109
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=49.45 E-value=14 Score=35.48 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHH
Q 041209 98 MDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQ 167 (412)
Q Consensus 98 ~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~ 167 (412)
+-..+++.+.|+++....+..+.+. .++.+||.. |++...+.+.++-..+..+..+.-+-|+||++-
T Consensus 218 ~~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~a 284 (290)
T PF01968_consen 218 RIANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAVA 284 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHT--EEEE---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 3344444455555544446665443 456667776 777777888884445555556788999999863
No 110
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=48.98 E-value=1.4e+02 Score=27.62 Aligned_cols=129 Identities=21% Similarity=0.300 Sum_probs=69.0
Q ss_pred CCchHHHHHHHHHHHHHHHHhhccCC--Cc--ccHHHHHHhhcceEEeeecccCceeEE-------------------EE
Q 041209 32 HLGGEDFDNRLVNHFVAEFKRKHKKD--IS--GNARALRRLQTTTIEIDSLYEGIDFYA-------------------TI 88 (412)
Q Consensus 32 ~lGG~d~D~~l~~~~~~~~~~~~~~~--~~--~~~~~~~~l~~~~i~i~~~~~~~~~~~-------------------~i 88 (412)
++=|+.+|-++-+- +++|.+-.++. ++ -+-..+.+.-+.-++++....+.|.++ ..
T Consensus 147 rIFGETlDIAvGNC-lDRFAR~lklsN~PsPGynieq~AK~gk~~ieLPY~VKGMDvSfSGiLs~ie~~a~~~~~~~~~~ 225 (336)
T KOG2708|consen 147 RIFGETLDIAVGNC-LDRFARVLKLSNDPSPGYNIEQLAKKGKNYIELPYTVKGMDVSFSGILSYIEDLAEELLKPSSEV 225 (336)
T ss_pred eeecceehhhhhhh-HHHHHHHhcCCCCCCCCcCHHHHHHhccceeecceeeeccccchHHHHHHHHHHHhhhhcccccc
Confidence 45688888887554 34555443322 22 122333333333355554444443322 23
Q ss_pred eHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhhC--CCcccccCCCchhHHhHHH
Q 041209 89 TRARFE-ELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFN--GKELCKSINPDEAVAYGAA 165 (412)
Q Consensus 89 tr~efe-~~~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f~--~~~~~~~~~pd~aVA~GAa 165 (412)
|.+++= ++-+.++.-+.+..++++...+ -+.|++|||-..--.+|++...+.. +..+.. -|-..|+--|+-
T Consensus 226 t~~DLCySLQEtvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~fa-TDeRfCIDNG~M 299 (336)
T KOG2708|consen 226 TKEDLCYSLQETVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCSERGGKLFA-TDERFCIDNGVM 299 (336)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHHhcCCceEe-cccceeeeCchH
Confidence 333321 1112234444455566665544 3579999999999999999988763 223333 255567777776
Q ss_pred HH
Q 041209 166 VQ 167 (412)
Q Consensus 166 ~~ 167 (412)
+.
T Consensus 300 IA 301 (336)
T KOG2708|consen 300 IA 301 (336)
T ss_pred HH
Confidence 53
No 111
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=48.89 E-value=67 Score=33.63 Aligned_cols=51 Identities=16% Similarity=0.249 Sum_probs=38.1
Q ss_pred cceEEEecCCcCcHHHHHHHHHhhC--CCcccccC---CCchhHHhHHHHHHHHHh
Q 041209 122 VHDVVLVGGSTRIPKVQQLLQDFFN--GKELCKSI---NPDEAVAYGAAVQAAILS 172 (412)
Q Consensus 122 id~V~LvGGssriP~V~~~l~~~f~--~~~~~~~~---~pd~aVA~GAa~~a~~l~ 172 (412)
++.|+|.||...-.++++.|.+.+. +.++..+. -.|.++++|++.+....+
T Consensus 246 ~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~ 301 (535)
T PRK09605 246 KDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKA 301 (535)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHc
Confidence 5689999999999999999996651 23343332 458999999987665554
No 112
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=47.21 E-value=8 Score=39.59 Aligned_cols=52 Identities=21% Similarity=0.299 Sum_probs=40.8
Q ss_pred ccceEEEecCCcCcHHHHHHHHHhhCC-----C---------cccccCCCchhHHhHHHHHHHHHh
Q 041209 121 QVHDVVLVGGSTRIPKVQQLLQDFFNG-----K---------ELCKSINPDEAVAYGAAVQAAILS 172 (412)
Q Consensus 121 ~id~V~LvGGssriP~V~~~l~~~f~~-----~---------~~~~~~~pd~aVA~GAa~~a~~l~ 172 (412)
--++|.+|||+...|.+...|++..-. . ++-+++||...+=.|||++|.+-.
T Consensus 526 l~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~ 591 (618)
T KOG0797|consen 526 LFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDF 591 (618)
T ss_pred hhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHH
Confidence 357799999999999999999887621 1 223447888889999999998654
No 113
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=47.13 E-value=70 Score=30.55 Aligned_cols=47 Identities=26% Similarity=0.240 Sum_probs=28.7
Q ss_pred cceEEEecCCcCcHHHHHHHHHhhCC--------CcccccCCCchhHHhHHHHHH
Q 041209 122 VHDVVLVGGSTRIPKVQQLLQDFFNG--------KELCKSINPDEAVAYGAAVQA 168 (412)
Q Consensus 122 id~V~LvGGssriP~V~~~l~~~f~~--------~~~~~~~~pd~aVA~GAa~~a 168 (412)
.+.|+|-||.+..|.+.+.|++.+.. .++..+...+.++++|||..+
T Consensus 246 P~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 246 PHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred CCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 46788877766555555555554421 123334455788999999876
No 114
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=46.93 E-value=54 Score=31.84 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=33.7
Q ss_pred ccceEEEecCCcCcHHHHHHHHHhhCC--CcccccC---CCchhHHhHHHH
Q 041209 121 QVHDVVLVGGSTRIPKVQQLLQDFFNG--KELCKSI---NPDEAVAYGAAV 166 (412)
Q Consensus 121 ~id~V~LvGGssriP~V~~~l~~~f~~--~~~~~~~---~pd~aVA~GAa~ 166 (412)
.++.|+|.||...-.++++.|.+.+.. -.+..+. --|.++++|+|=
T Consensus 259 ~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~ag 309 (314)
T TIGR03723 259 GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAAG 309 (314)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHHH
Confidence 367899999999999999999988721 1332222 347888888873
No 115
>PLN03173 chalcone synthase; Provisional
Probab=46.50 E-value=80 Score=31.75 Aligned_cols=44 Identities=18% Similarity=0.266 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhcCCCCCccceEEEecCCc-CcHHHHHHHHHhhC
Q 041209 103 KCMEPVEKCLRDSKIDKSQVHDVVLVGGST-RIPKVQQLLQDFFN 146 (412)
Q Consensus 103 ~~~~~i~~~l~~a~~~~~~id~V~LvGGss-riP~V~~~l~~~f~ 146 (412)
=....++++|+++++++++||.|+.+..+. .+|.+.-.|.+.++
T Consensus 105 La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LG 149 (391)
T PLN03173 105 LGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (391)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhC
Confidence 344568889999999999999988876544 58999999999994
No 116
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=46.05 E-value=54 Score=33.22 Aligned_cols=85 Identities=18% Similarity=0.139 Sum_probs=48.1
Q ss_pred ceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHH-hhCCCcccccCCCchhH
Q 041209 82 IDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQD-FFNGKELCKSINPDEAV 160 (412)
Q Consensus 82 ~~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~-~f~~~~~~~~~~pd~aV 160 (412)
..-.+.||..+..++.. --.-+..-++-+|++++++++||+.|+|.||....=-+.+.+.= .+|.....+-.-.-.++
T Consensus 289 ~~~~i~itq~DIr~~ql-AKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~iGLlP~~~~~kv~~~GN~a 367 (412)
T PF14574_consen 289 IGDDIYITQKDIREFQL-AKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIRIGLLPDVPAEKVRFVGNAA 367 (412)
T ss_dssp SSS-EEEEHHHHHHHHH-HHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHHTTSS--S-GGGEEEEC-HH
T ss_pred CCCCEEEeHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhhcCCCCCccccCEEEECcHH
Confidence 34458999999977532 22233455677889999999999999999999887777666643 33332222222223455
Q ss_pred HhHHHHH
Q 041209 161 AYGAAVQ 167 (412)
Q Consensus 161 A~GAa~~ 167 (412)
-.||.+.
T Consensus 368 l~GA~~~ 374 (412)
T PF14574_consen 368 LAGARMA 374 (412)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 117
>PLN03170 chalcone synthase; Provisional
Probab=45.50 E-value=74 Score=32.12 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhcCCCCCccceEEEecCCc-CcHHHHHHHHHhhC
Q 041209 103 KCMEPVEKCLRDSKIDKSQVHDVVLVGGST-RIPKVQQLLQDFFN 146 (412)
Q Consensus 103 ~~~~~i~~~l~~a~~~~~~id~V~LvGGss-riP~V~~~l~~~f~ 146 (412)
=....++++|+++++++++||.|+++-.+. .+|.+.-.|.+.++
T Consensus 109 La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 153 (401)
T PLN03170 109 LGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLG 153 (401)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhC
Confidence 345667889999999999999988776544 69999999999994
No 118
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=45.30 E-value=21 Score=35.39 Aligned_cols=38 Identities=11% Similarity=0.159 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcH
Q 041209 98 MDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIP 135 (412)
Q Consensus 98 ~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP 135 (412)
+..++.+...++++|++++++++|||.+++.+++.++-
T Consensus 267 ~~~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~~~ 304 (372)
T PRK07515 267 KEVCPMVAEHIVEHLAENGLTPADVKRFWLHQANINMN 304 (372)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHHH
Confidence 44556677889999999999999999999999998754
No 119
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=44.80 E-value=32 Score=32.82 Aligned_cols=50 Identities=24% Similarity=0.224 Sum_probs=36.5
Q ss_pred CCCCCccceEEEecCCcCcHHHHHHHHHhhC---CCcccccCCCchhHHhHHH
Q 041209 116 KIDKSQVHDVVLVGGSTRIPKVQQLLQDFFN---GKELCKSINPDEAVAYGAA 165 (412)
Q Consensus 116 ~~~~~~id~V~LvGGssriP~V~~~l~~~f~---~~~~~~~~~pd~aVA~GAa 165 (412)
..-+..+|.|+|+||-.+--.+-++|.+... ...+...-|-.+|.|.|+.
T Consensus 291 avL~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~l 343 (358)
T COG3426 291 AVLKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGAL 343 (358)
T ss_pred hhcCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhH
Confidence 3445679999999999999999999988752 2223333455688888885
No 120
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=44.33 E-value=28 Score=34.47 Aligned_cols=45 Identities=22% Similarity=0.159 Sum_probs=31.0
Q ss_pred ccceEEEecCCcCcHHHHHHHHHhhCCCc-c--cccCCCchhHHhHHH
Q 041209 121 QVHDVVLVGGSTRIPKVQQLLQDFFNGKE-L--CKSINPDEAVAYGAA 165 (412)
Q Consensus 121 ~id~V~LvGGssriP~V~~~l~~~f~~~~-~--~~~~~pd~aVA~GAa 165 (412)
++|.|++.||-+..+.+++.|.+.+.-.. + ....+-.++.|.||.
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~ 340 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGAL 340 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHH
Confidence 57899999999999999999988873222 2 222233466676664
No 121
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=44.21 E-value=71 Score=31.65 Aligned_cols=59 Identities=20% Similarity=0.209 Sum_probs=45.8
Q ss_pred hcCCCCCccceEEEecCCcCcHHHHHHHHHhhCCCccc----ccCCCchhHHhHHHHHHHHHh
Q 041209 114 DSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELC----KSINPDEAVAYGAAVQAAILS 172 (412)
Q Consensus 114 ~a~~~~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~----~~~~pd~aVA~GAa~~a~~l~ 172 (412)
....-+.+.+.++++||+.+-|++.+.|...+++..+. ..+++|..=|.+-|++|...-
T Consensus 283 s~~~~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~l 345 (371)
T COG2377 283 SVATLQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRTL 345 (371)
T ss_pred HHhhccCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHHH
Confidence 33344566789999999999999999999999765554 246778888888888887653
No 122
>PLN03172 chalcone synthase family protein; Provisional
Probab=43.21 E-value=91 Score=31.37 Aligned_cols=45 Identities=18% Similarity=0.280 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhcCCCCCccceEEEecCCc-CcHHHHHHHHHhhC
Q 041209 102 RKCMEPVEKCLRDSKIDKSQVHDVVLVGGST-RIPKVQQLLQDFFN 146 (412)
Q Consensus 102 ~~~~~~i~~~l~~a~~~~~~id~V~LvGGss-riP~V~~~l~~~f~ 146 (412)
+=....++++|+++++.+++||.|+++-.+. .+|.+.-.|.+.++
T Consensus 104 ~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LG 149 (393)
T PLN03172 104 KLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (393)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhC
Confidence 3344567889999999999999988776555 69999999999994
No 123
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=42.69 E-value=2e+02 Score=30.96 Aligned_cols=86 Identities=17% Similarity=0.184 Sum_probs=53.0
Q ss_pred EEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhhCC-----------------
Q 041209 85 YATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNG----------------- 147 (412)
Q Consensus 85 ~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f~~----------------- 147 (412)
.+.|.-.++++.+-..--.+...++.+.+.. +--+.|.++|+|--||+|.|+..++...+-
T Consensus 744 pl~i~~~ql~e~~ls~~~~i~~~f~al~EaI--n~y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg~WY 821 (1014)
T COG4457 744 PLAIDLSQLHECFLSGDYDITGVFDALCEAI--NHYDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVGTWY 821 (1014)
T ss_pred ceeccHHHHHHHHhhCcccccchHHHHHHHH--hhhcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceecccee
Confidence 3566666666554322001222222222221 234578899999999999999999987631
Q ss_pred --CcccccCCCchhHHhHHHHHHHHHh
Q 041209 148 --KELCKSINPDEAVAYGAAVQAAILS 172 (412)
Q Consensus 148 --~~~~~~~~pd~aVA~GAa~~a~~l~ 172 (412)
.+-.+--||...+|.||-+.+..+.
T Consensus 822 PF~k~grIddPKtTAaVGAMLC~Lsl~ 848 (1014)
T COG4457 822 PFRKQGRIDDPKTTAAVGAMLCALSLE 848 (1014)
T ss_pred cccccCcCCCcchHHHHHHHHHHHHhh
Confidence 1222345899999999988776554
No 124
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=42.34 E-value=60 Score=31.19 Aligned_cols=49 Identities=33% Similarity=0.314 Sum_probs=29.4
Q ss_pred eEEEecCCcCcH-HHHHHHHHhhCC---CcccccCCCchhHHhHHHHHHHHHh
Q 041209 124 DVVLVGGSTRIP-KVQQLLQDFFNG---KELCKSINPDEAVAYGAAVQAAILS 172 (412)
Q Consensus 124 ~V~LvGGssriP-~V~~~l~~~f~~---~~~~~~~~pd~aVA~GAa~~a~~l~ 172 (412)
.|++|||....- .+++-.-..+.. -+-.....|.++-|.|||++|+.+-
T Consensus 266 ~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~laa~~~ 318 (336)
T KOG1794|consen 266 PIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAILAASLD 318 (336)
T ss_pred eEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHHhhhhc
Confidence 599999965432 222222111111 1223445788999999999999875
No 125
>cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=42.30 E-value=59 Score=26.05 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCccce--EEEecCCcCcHHHHHHHHHhhC
Q 041209 92 RFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHD--VVLVGGSTRIPKVQQLLQDFFN 146 (412)
Q Consensus 92 efe~~~~~~~~~~~~~i~~~l~~a~~~~~~id~--V~LvGGssriP~V~~~l~~~f~ 146 (412)
++++.+...++ -++.+|+.++.++++|-. |+|+.-....+.+.+...++|+
T Consensus 30 d~~~Q~~~~~~----ni~~~L~~aG~~~~dvvk~~vyl~~~~~~~~~~~~~~~~~f~ 82 (111)
T cd02198 30 DFEAQFRLAFQ----NLGAVLEAAGCSFDDVVELTTFHVDMAAHLPAFAAVKDEYFK 82 (111)
T ss_pred CHHHHHHHHHH----HHHHHHHHcCCCHHHEEEEEEEEeccHHHHHHHHHHHHHHcC
Confidence 45555444444 466677778888888766 6778755789999999999995
No 126
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=42.28 E-value=52 Score=30.88 Aligned_cols=41 Identities=17% Similarity=0.320 Sum_probs=30.6
Q ss_pred ccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHH
Q 041209 121 QVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAA 165 (412)
Q Consensus 121 ~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa 165 (412)
.+|.| |=|+|..|++.+.+++.|| ..+ .-+||.+++|.=+.
T Consensus 172 ~~d~l--ILGCTh~P~l~~~i~~~~~-~~v-~~IDp~~~la~~~~ 212 (251)
T TIGR00067 172 LPDTV--VLGCTHFPLLKEEIEQYLP-EHV-RLVDSGVHTARRTA 212 (251)
T ss_pred CCCEE--EECcCChHHHHHHHHHHcC-CCc-EEECCHHHHHHHHH
Confidence 46665 4499999999999999994 333 45789888877554
No 127
>PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=42.27 E-value=41 Score=33.71 Aligned_cols=46 Identities=20% Similarity=0.462 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhhcCCCCCccceEEEecCCcCc--HHHHHHHHHhhCC
Q 041209 102 RKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRI--PKVQQLLQDFFNG 147 (412)
Q Consensus 102 ~~~~~~i~~~l~~a~~~~~~id~V~LvGGssri--P~V~~~l~~~f~~ 147 (412)
......++++|+++++.+++|+.|...|=++.. +.=.+.|++.|+.
T Consensus 254 ~~~~~ai~~Al~~agi~p~dId~i~~hgtgt~~~D~~E~~al~~~fg~ 301 (381)
T PRK05952 254 KSAIAAIQQCLARSGLTPEDIDYIHAHGTATRLNDQREANLIQALFPH 301 (381)
T ss_pred HHHHHHHHHHHHHhCCCHHHeeEEEccCCCCCCCcHHHHHHHHHHcCC
Confidence 345678899999999999999999999988876 5666788999953
No 128
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.22 E-value=48 Score=27.75 Aligned_cols=22 Identities=14% Similarity=0.587 Sum_probs=17.5
Q ss_pred HHHHHHcCC-CCcCHHHHHHHHH
Q 041209 338 EAIEWLDGN-QLVEVDELEDKLK 359 (412)
Q Consensus 338 ~~~~wl~~~-~~~~~~~~~~~~~ 359 (412)
..+.||+++ +..|+++|++|+.
T Consensus 90 knE~WleEDe~~iTpE~fk~Rm~ 112 (156)
T COG4296 90 KNEDWLEEDEQPITPESFKERMA 112 (156)
T ss_pred chhhhhhccCCccCHHHHHHHhh
Confidence 356899975 6789999998875
No 129
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=42.05 E-value=80 Score=32.45 Aligned_cols=68 Identities=28% Similarity=0.461 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhhcCCCCCccce--EEEecCCcCcHHHHHHHHH---hhCCCcccccCCCc-hhH--HhHHHHHHHHHh
Q 041209 102 RKCMEPVEKCLRDSKIDKSQVHD--VVLVGGSTRIPKVQQLLQD---FFNGKELCKSINPD-EAV--AYGAAVQAAILS 172 (412)
Q Consensus 102 ~~~~~~i~~~l~~a~~~~~~id~--V~LvGGssriP~V~~~l~~---~f~~~~~~~~~~pd-~aV--A~GAa~~a~~l~ 172 (412)
+.+...|++-.++|++.+++|+. |+++|=+.|=--=++.+.. .. |.=+..+--|| |++ ++||. |+.+|
T Consensus 63 ~al~~iv~~eY~~Agi~p~~I~TGAVIITGETArKeNA~~v~~~Ls~~a-GDFVVATAGPdLEsiiAgkGsG--A~~~S 138 (473)
T PF06277_consen 63 EALKEIVEEEYRKAGITPEDIDTGAVIITGETARKENAREVLHALSGFA-GDFVVATAGPDLESIIAGKGSG--AAALS 138 (473)
T ss_pred HHHHHHHHHHHHHcCCCHHHCccccEEEecchhhhhhHHHHHHHHHHhc-CCEEEEccCCCHHHHHhccCcc--HHHHh
Confidence 45567788889999999999997 9999999998766655544 44 55555555665 444 45554 34444
No 130
>PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=41.38 E-value=45 Score=33.43 Aligned_cols=45 Identities=13% Similarity=0.268 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhcCCCCCccceEEEecCCcCc--HHHHHHHHHhhCCC
Q 041209 104 CMEPVEKCLRDSKIDKSQVHDVVLVGGSTRI--PKVQQLLQDFFNGK 148 (412)
Q Consensus 104 ~~~~i~~~l~~a~~~~~~id~V~LvGGssri--P~V~~~l~~~f~~~ 148 (412)
....++++|+++++.+++||.|.+.|=+++. +.=...|.+.|+..
T Consensus 262 ~~~a~~~Al~~Agl~~~dId~v~~hgtgt~~~D~~E~~al~~~f~~~ 308 (392)
T PRK09185 262 AILAMQQALADAGLAPADIGYINLHGTATPLNDAMESRAVAAVFGDG 308 (392)
T ss_pred HHHHHHHHHHHcCCCHHHccEEEeCCCCCcCCCHHHHHHHHHHhCCC
Confidence 3467899999999999999999999988875 55567888899543
No 131
>PLN03168 chalcone synthase; Provisional
Probab=40.80 E-value=98 Score=31.07 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCccceEEEecCC-cCcHHHHHHHHHhhC
Q 041209 101 FRKCMEPVEKCLRDSKIDKSQVHDVVLVGGS-TRIPKVQQLLQDFFN 146 (412)
Q Consensus 101 ~~~~~~~i~~~l~~a~~~~~~id~V~LvGGs-sriP~V~~~l~~~f~ 146 (412)
.+=..+.++++|+++++++++||.|+++-.+ -.+|.+--.|.+.++
T Consensus 102 ~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 148 (389)
T PLN03168 102 PKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLG 148 (389)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhC
Confidence 3334566888999999999999998876433 358999999999994
No 132
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=40.43 E-value=1.1e+02 Score=30.10 Aligned_cols=53 Identities=17% Similarity=0.458 Sum_probs=36.7
Q ss_pred EeHHHHHHHHHHH----HHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhh
Q 041209 88 ITRARFEELNMDL----FRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFF 145 (412)
Q Consensus 88 itr~efe~~~~~~----~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f 145 (412)
++.++.+++|..+ ++-+.+.++++++..+ ++.++++||-+.-..+|+++++..
T Consensus 229 ~~~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~ 285 (342)
T COG0533 229 LNEEDKEDIAASFQEAVFDMLVEKTERALKHTG-----KKELVIAGGVAANSRLREMLEEMC 285 (342)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHH
Confidence 3344555566544 3344445566666655 567999999999999999998876
No 133
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=39.25 E-value=74 Score=34.11 Aligned_cols=44 Identities=36% Similarity=0.615 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHcCC---C-----Cc---CHHHHHHHHHHHHHhHHHHHHH
Q 041209 328 DKQKIEKAIDEAIEWLDGN---Q-----LV---EVDELEDKLKELKGFCNPIIAK 371 (412)
Q Consensus 328 e~~~i~~~l~~~~~wl~~~---~-----~~---~~~~~~~~~~~L~~~~~~i~~r 371 (412)
+.+++...+.+.+.|+... + ++ ..++...+.++|++.+.+|..+
T Consensus 671 ~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~pv~~~e~~~~~~~l~~~~~~i~~~ 725 (727)
T KOG0103|consen 671 EMEKVLLEIEEAEKWLERKSNKQNKLSKTADPVPSSEIESEAKELNNTCSDIISK 725 (727)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCchHHHHHhhhhhcccccccccc
Confidence 6778888999999999863 1 22 3488999999999999988754
No 134
>PLN02939 transferase, transferring glycosyl groups
Probab=39.13 E-value=1.7e+02 Score=33.14 Aligned_cols=73 Identities=16% Similarity=0.192 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHhhhhhcch-hhhhcCCCHHhHHHHHHHHHHHHHHHc
Q 041209 272 LSKEEIERMVQEAEKYKAEDEEIKKKVEAKNSLENYAYNMSNTVRD-EKFAGKLDPADKQKIEKAIDEAIEWLD 344 (412)
Q Consensus 272 ls~e~i~~~~~~~~~~~~~D~~~~~~~~a~N~lE~~i~~~r~~l~~-~~~~~~~~~~e~~~i~~~l~~~~~wl~ 344 (412)
+-.++++.++.++....+.|+........+.-|++++-.+...+-. ..-...+.+-+.+.+++.++.++..|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (977)
T PLN02939 237 LLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLD 310 (977)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHH
Confidence 4467788888888888888888887778888888888877766543 222233444444455666666665555
No 135
>PRK09698 D-allose kinase; Provisional
Probab=38.38 E-value=1.2e+02 Score=28.85 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=30.8
Q ss_pred ccceEEEecCCcCc-----HHHHHHHHHhhC------CCcccccCCCchhHHhHHHHHHH
Q 041209 121 QVHDVVLVGGSTRI-----PKVQQLLQDFFN------GKELCKSINPDEAVAYGAAVQAA 169 (412)
Q Consensus 121 ~id~V~LvGGssri-----P~V~~~l~~~f~------~~~~~~~~~pd~aVA~GAa~~a~ 169 (412)
+.+.|+|-||.++. +.+++.+++..- ..++..+...+.+.++|||+++.
T Consensus 236 dP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~ 295 (302)
T PRK09698 236 DPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILAH 295 (302)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHHH
Confidence 35678887776653 346666666431 11234444567888999998864
No 136
>PLN02854 3-ketoacyl-CoA synthase
Probab=38.16 E-value=1e+02 Score=32.33 Aligned_cols=43 Identities=2% Similarity=0.220 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhcCCCCCccceEEE-ecCCcCcHHHHHHHHHhhC
Q 041209 104 CMEPVEKCLRDSKIDKSQVHDVVL-VGGSTRIPKVQQLLQDFFN 146 (412)
Q Consensus 104 ~~~~i~~~l~~a~~~~~~id~V~L-vGGssriP~V~~~l~~~f~ 146 (412)
+...++++|+++++++++||.|++ +.+....|.+.-+|.+.++
T Consensus 192 ~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LG 235 (521)
T PLN02854 192 MFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYK 235 (521)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhC
Confidence 445678889999999999999886 3333357999999999994
No 137
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=38.13 E-value=79 Score=31.24 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=22.5
Q ss_pred cceEEEecCCcCcHHHHHHHHHhh
Q 041209 122 VHDVVLVGGSTRIPKVQQLLQDFF 145 (412)
Q Consensus 122 id~V~LvGGssriP~V~~~l~~~f 145 (412)
+..|+++||-+.-.++|+.+++..
T Consensus 264 ~~~lvv~GGVAaN~~LR~~l~~~~ 287 (345)
T PTZ00340 264 SNEVLIVGGVGCNLRLQEMMQQMA 287 (345)
T ss_pred CCeEEEcCCHHHHHHHHHHHHHHH
Confidence 678999999999999999999987
No 138
>PLN02192 3-ketoacyl-CoA synthase
Probab=37.81 E-value=1.3e+02 Score=31.55 Aligned_cols=54 Identities=6% Similarity=0.195 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEecC-CcCcHHHHHHHHHhhC
Q 041209 93 FEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGG-STRIPKVQQLLQDFFN 146 (412)
Q Consensus 93 fe~~~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGG-ssriP~V~~~l~~~f~ 146 (412)
+++..+....-+...++++|+++++++++||.|+.... ....|.+.-+|.+.++
T Consensus 169 ~~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lG 223 (511)
T PLN02192 169 MAEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYK 223 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhC
Confidence 34444444444566788999999999999998776522 2247999999999994
No 139
>COG4907 Predicted membrane protein [Function unknown]
Probab=37.41 E-value=26 Score=35.48 Aligned_cols=10 Identities=10% Similarity=0.351 Sum_probs=4.4
Q ss_pred EEEEEeeccc
Q 041209 204 VLIQVYEGER 213 (412)
Q Consensus 204 i~i~i~eG~~ 213 (412)
+-..+++|+.
T Consensus 301 ~vn~i~~gd~ 310 (595)
T COG4907 301 KVNRILPGDS 310 (595)
T ss_pred EEEEecCCCC
Confidence 3334455543
No 140
>PRK06840 hypothetical protein; Validated
Probab=37.24 E-value=81 Score=30.68 Aligned_cols=43 Identities=12% Similarity=0.269 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhcCCCCCccceEEEecCCc---CcHHHHHHHHHhhC
Q 041209 104 CMEPVEKCLRDSKIDKSQVHDVVLVGGST---RIPKVQQLLQDFFN 146 (412)
Q Consensus 104 ~~~~i~~~l~~a~~~~~~id~V~LvGGss---riP~V~~~l~~~f~ 146 (412)
....++++|+++++++++||.|+.++-++ ..|.....|...++
T Consensus 57 a~~Aa~~aL~~ag~~~~dId~li~~~~~~~~~~~p~~a~~l~~~lG 102 (339)
T PRK06840 57 AIAAAKPALKQAGVDPAAIDVVIYIGSEHKDYPVWSSAPKIQHEIG 102 (339)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEeccCCCCCCCCchHHHHHHHhC
Confidence 45678899999999999999998765322 36766677777774
No 141
>PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=37.02 E-value=58 Score=33.02 Aligned_cols=45 Identities=7% Similarity=0.169 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhcCCCCCccceEEEecCCcCc--HHHHHHHHHhhCC
Q 041209 103 KCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRI--PKVQQLLQDFFNG 147 (412)
Q Consensus 103 ~~~~~i~~~l~~a~~~~~~id~V~LvGGssri--P~V~~~l~~~f~~ 147 (412)
.....++++|+++++++++|+.|..-|=+|+. +.=.+.|++.|+.
T Consensus 287 ~~~~a~~~Al~~agi~~~did~ie~hgtgt~~~D~~E~~Al~~~fg~ 333 (418)
T PRK07910 287 RAGHAMTRAIELAGLTPGDIDHVNAHATGTSVGDVAEGKAINNALGG 333 (418)
T ss_pred HHHHHHHHHHHHhCCCHHHCCEEEcCCcCCCCCCHHHHHHHHHHhCC
Confidence 34577899999999999999999999988876 6777889999964
No 142
>PRK00865 glutamate racemase; Provisional
Probab=36.90 E-value=67 Score=30.26 Aligned_cols=43 Identities=26% Similarity=0.389 Sum_probs=31.3
Q ss_pred ccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHH
Q 041209 121 QVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQ 167 (412)
Q Consensus 121 ~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~ 167 (412)
.+|.|+| |+|-+|++.+.+++.++ ..+ .-+||..++|.=+.-+
T Consensus 177 g~d~iIL--GCTh~p~l~~~i~~~~~-~~v-~vIDp~~~~a~~~~~~ 219 (261)
T PRK00865 177 GIDTLVL--GCTHYPLLKPEIQQVLG-EGV-TLIDSGEAIARRVARL 219 (261)
T ss_pred CCCEEEE--CCcCHHHHHHHHHHHcC-CCC-EEECCHHHHHHHHHHH
Confidence 4666654 89999999999999994 222 3468888877766544
No 143
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=36.12 E-value=1.3e+02 Score=28.72 Aligned_cols=67 Identities=18% Similarity=0.170 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhcCCC----CCccceEEEecCCcC------------------------cHHHHHHHHHhhCCCcccccC
Q 041209 103 KCMEPVEKCLRDSKID----KSQVHDVVLVGGSTR------------------------IPKVQQLLQDFFNGKELCKSI 154 (412)
Q Consensus 103 ~~~~~i~~~l~~a~~~----~~~id~V~LvGGssr------------------------iP~V~~~l~~~f~~~~~~~~~ 154 (412)
-....++++|++++++ +.+++.|++ |.++. .|.+-..|...++-.-+..++
T Consensus 14 l~~~aa~~aL~~Ag~~~~~~~~~i~~ii~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~g~~~~v 92 (332)
T cd00825 14 LGFEAAERAIADAGLSREYQKNPIVGVVV-GTGGGSPRFQVFGADAMRAVGPYVVTKAMFPGASGQIATPLGIHGPAYDV 92 (332)
T ss_pred HHHHHHHHHHHHcCCCccccCCCCEEEEE-EeCCccHHHHhhhhccccccCcchhhcccchHHHHHHHHHhCCCCCcccc
Confidence 3456788999999999 889999875 33321 455667777777432334444
Q ss_pred CCchhHHhHHHHHHHH
Q 041209 155 NPDEAVAYGAAVQAAI 170 (412)
Q Consensus 155 ~pd~aVA~GAa~~a~~ 170 (412)
+...+...-|..+|..
T Consensus 93 ~~~cas~~~al~~A~~ 108 (332)
T cd00825 93 SAACAGSLHALSLAAD 108 (332)
T ss_pred ccHhHHHHHHHHHHHH
Confidence 4333333333344443
No 144
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=35.74 E-value=46 Score=32.77 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHhcC
Q 041209 354 LEDKLKELKGFCNPIIAKMYEGG 376 (412)
Q Consensus 354 ~~~~~~~L~~~~~~i~~r~~e~~ 376 (412)
=++|+-.++.++-.+..|+.+-+
T Consensus 63 ~qeKFl~IR~KlleL~~~lQ~lS 85 (379)
T PF11593_consen 63 PQEKFLLIRSKLLELYNKLQELS 85 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666544
No 145
>PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=35.34 E-value=66 Score=32.45 Aligned_cols=55 Identities=16% Similarity=0.132 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCccceEEEecCCcCc--HHHHHHHHHhhCCCcccccCC
Q 041209 101 FRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRI--PKVQQLLQDFFNGKELCKSIN 155 (412)
Q Consensus 101 ~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssri--P~V~~~l~~~f~~~~~~~~~~ 155 (412)
.......++++|+++++++++|+.|...|=+|.. +.=.+.|++.|+...+..+..
T Consensus 274 ~~~~~~ai~~AL~~Agi~p~dId~I~~Hgtgt~~~D~~E~~Ai~~~fg~~~pv~s~K 330 (405)
T PRK09116 274 AETMQIAMELALKDAGLAPEDIGYVNAHGTATDRGDIAESQATAAVFGARMPISSLK 330 (405)
T ss_pred HHHHHHHHHHHHHHhCCCHHHcCEEECcCccCCCCCHHHHHHHHHHhCCCCeeECcc
Confidence 3455678899999999999999999999877754 577778999996433333333
No 146
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=34.90 E-value=2.9e+02 Score=30.23 Aligned_cols=53 Identities=23% Similarity=0.386 Sum_probs=43.6
Q ss_pred CCCHHhHHHHHHHHHHHHHHHcCCC------------CcCHHHHHHHHHHHHHhHHHHHHHHHhc
Q 041209 323 KLDPADKQKIEKAIDEAIEWLDGNQ------------LVEVDELEDKLKELKGFCNPIIAKMYEG 375 (412)
Q Consensus 323 ~~~~~e~~~i~~~l~~~~~wl~~~~------------~~~~~~~~~~~~~L~~~~~~i~~r~~e~ 375 (412)
.++..++..+.+.+.+.-.|+.+.. -...+++..+.+.|+..+.-...|+.-+
T Consensus 774 ~ft~~e~~~L~k~i~~t~~W~~~~~~~~~k~~k~edp~~k~kei~~K~k~Ldrev~~~lnK~k~~ 838 (902)
T KOG0104|consen 774 IFTKTEIDTLEKVIAKTTAWLNDRLDLFEKKAKTEDPVLKVKEIEEKAKSLDREVLYLLNKLKIR 838 (902)
T ss_pred chhhhhHHHHHHHHHHhHHHhhhhHHHHHhhhcccCccccHHHHHHHHHhhHHHHHHHHHHhhcc
Confidence 4677899999999999999998631 1377899999999999998888887643
No 147
>cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.
Probab=34.61 E-value=71 Score=31.94 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCccceEEEecCCcCc--HHHHHHHHHhhCC
Q 041209 101 FRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRI--PKVQQLLQDFFNG 147 (412)
Q Consensus 101 ~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssri--P~V~~~l~~~f~~ 147 (412)
.......++++|+++++.+++||.|.+.|-++.. +.=.+.|.+.|+.
T Consensus 278 ~~~~~~a~~~al~~Agi~~~did~i~~hgtgt~~~D~~E~~al~~~f~~ 326 (421)
T cd00833 278 GEAQAALIRRAYARAGVDPSDIDYVEAHGTGTPLGDPIEVEALAKVFGG 326 (421)
T ss_pred HHHHHHHHHHHHHHhCCCHHHCcEEEeeCCCCCCCCHHHHHHHHHHHhc
Confidence 3445678899999999999999999999988876 4555788888854
No 148
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=34.10 E-value=88 Score=30.76 Aligned_cols=45 Identities=7% Similarity=0.079 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHH
Q 041209 95 ELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQ 139 (412)
Q Consensus 95 ~~~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~ 139 (412)
...+.-.+.+..+++++|++++++.+|||.|-.+=|-..++.+.=
T Consensus 45 ~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~V 89 (342)
T COG0533 45 LASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLV 89 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHH
Confidence 345667788889999999999999999999999999888887753
No 149
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=33.99 E-value=1.1e+02 Score=30.39 Aligned_cols=43 Identities=9% Similarity=0.185 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhcCCCCCccceEEEecCC--cCcHHHHHHHHHhhC
Q 041209 104 CMEPVEKCLRDSKIDKSQVHDVVLVGGS--TRIPKVQQLLQDFFN 146 (412)
Q Consensus 104 ~~~~i~~~l~~a~~~~~~id~V~LvGGs--sriP~V~~~l~~~f~ 146 (412)
....++++|+++++.+++||.|++...+ ..+|...-.|...++
T Consensus 99 a~~Aa~~aL~~agl~~~~Id~li~~~~~~~~~~p~~a~~v~~~Lg 143 (372)
T PRK07515 99 GVAAARQALARAGRTAEDIDAVIVACSNMQRAYPAMAIEIQQALG 143 (372)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhcC
Confidence 4456788999999999999988764332 357777777888884
No 150
>PRK06065 acetyl-CoA acetyltransferase; Provisional
Probab=33.88 E-value=1e+02 Score=30.93 Aligned_cols=43 Identities=19% Similarity=0.299 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhcCCCCCccceEEEecCC----cCcHHHHHHHHHhhCC
Q 041209 104 CMEPVEKCLRDSKIDKSQVHDVVLVGGS----TRIPKVQQLLQDFFNG 147 (412)
Q Consensus 104 ~~~~i~~~l~~a~~~~~~id~V~LvGGs----sriP~V~~~l~~~f~~ 147 (412)
....++++|+++++++.+||.+++ |.. +-.+.+...+...++.
T Consensus 33 ~~~A~~~Al~dagl~~~dID~~i~-~~~~~~~~~~~~~a~~l~~~lG~ 79 (392)
T PRK06065 33 AWEAASKALDEAGLELKDIDCVVI-GSAPDAFDGVHMKGEYLSHGSGG 79 (392)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEE-eccCCcccccccHHHHHHHHcCC
Confidence 455688999999999999999886 321 1245577777777743
No 151
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=33.82 E-value=1.5e+02 Score=28.77 Aligned_cols=44 Identities=14% Similarity=0.119 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhcCCCCCccceEEEecCC--cCcHHHHHHHHHhhC
Q 041209 103 KCMEPVEKCLRDSKIDKSQVHDVVLVGGS--TRIPKVQQLLQDFFN 146 (412)
Q Consensus 103 ~~~~~i~~~l~~a~~~~~~id~V~LvGGs--sriP~V~~~l~~~f~ 146 (412)
=....++++|+++++.+++||.|+....+ ...|.....+...++
T Consensus 64 la~~Aa~~aL~~ag~~~~~Id~li~~s~~~~~~~p~~a~~v~~~lg 109 (338)
T PRK09258 64 GAIAAGRKALAEAGIDPSDIGLLINTSVCRDYLEPATACRVHHNLG 109 (338)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCChHHHHHHHHcC
Confidence 34567888999999999999998865432 457888888888884
No 152
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=33.71 E-value=1.5e+02 Score=28.56 Aligned_cols=43 Identities=21% Similarity=0.410 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhcCCCCCccceEEEecCCc--CcHHHHHHHHHhhC
Q 041209 104 CMEPVEKCLRDSKIDKSQVHDVVLVGGST--RIPKVQQLLQDFFN 146 (412)
Q Consensus 104 ~~~~i~~~l~~a~~~~~~id~V~LvGGss--riP~V~~~l~~~f~ 146 (412)
....++++|+++++.+++||.|+.+.++. .+|...-.|...++
T Consensus 56 a~~Aa~~aL~~ag~~~~dId~li~~~~~~~~~~p~~a~~v~~~lg 100 (329)
T PRK07204 56 GAEAAKKAVEDAKLTLDDIDCIICASGTIQQAIPCTASLIQEQLG 100 (329)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCccHHHHHHHHhC
Confidence 45568889999999999999987664332 47888888888884
No 153
>PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional
Probab=33.39 E-value=66 Score=31.68 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCccceEEEecCCcCc--HHHHHHHHHhhCC
Q 041209 101 FRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRI--PKVQQLLQDFFNG 147 (412)
Q Consensus 101 ~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssri--P~V~~~l~~~f~~ 147 (412)
.......++++|+++++++++|+.|...|=+|.. +.=.+.|++.|+.
T Consensus 205 ~~~~~~ai~~AL~~Agl~p~dIdyIeaHgtgT~~~D~~E~~Ai~~~fg~ 253 (342)
T PRK14691 205 GDGAYRAMKIALRQAGITPEQVQHLNAHATSTPVGDLGEINAIKHLFGE 253 (342)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEecCCCCcCCCHHHHHHHHHHhCC
Confidence 4445678999999999999999999999988887 6777889999953
No 154
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=32.99 E-value=2.6e+02 Score=26.25 Aligned_cols=17 Identities=12% Similarity=0.479 Sum_probs=9.1
Q ss_pred HhHHHHHHHHHHHHHHH
Q 041209 327 ADKQKIEKAIDEAIEWL 343 (412)
Q Consensus 327 ~e~~~i~~~l~~~~~wl 343 (412)
.+.......++.+..|+
T Consensus 153 ~El~~A~~LL~~v~~~~ 169 (264)
T PF06008_consen 153 DELKEAEDLLSRVQKWF 169 (264)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555555555
No 155
>TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II. FabB sequences should fall well below the noise cutoff of this model.
Probab=32.02 E-value=1.1e+02 Score=30.65 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhcCCCCCccceEEEecCCcCc--HHHHHHHHHhhCC
Q 041209 104 CMEPVEKCLRDSKIDKSQVHDVVLVGGSTRI--PKVQQLLQDFFNG 147 (412)
Q Consensus 104 ~~~~i~~~l~~a~~~~~~id~V~LvGGssri--P~V~~~l~~~f~~ 147 (412)
....++++|+++++++++||.|++-|=+|.. +.-...+.+.|++
T Consensus 277 ~~~ai~~Al~~Agi~~~dId~ve~h~tgt~~~D~~E~~a~~~~~~~ 322 (407)
T TIGR03150 277 AARAMRAALKDAGINPEDVDYINAHGTSTPLGDKAETKAIKRVFGD 322 (407)
T ss_pred HHHHHHHHHHHcCCCHhHCCEEeCcCCCCCCCCHHHHHHHHHHhcc
Confidence 4567899999999999999999999988866 5666778889954
No 156
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=31.98 E-value=75 Score=32.23 Aligned_cols=55 Identities=22% Similarity=0.276 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhh
Q 041209 91 ARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFF 145 (412)
Q Consensus 91 ~efe~~~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f 145 (412)
+.++++-+-+++.+..++.+++.++++++++|..+.++|=++...++...=-+.+
T Consensus 53 ~~~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllGl~~~~L 107 (412)
T PF14574_consen 53 EGLEELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLGLDPEGL 107 (412)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT---GGG
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcCCChHHh
Confidence 3467777788888999999999999999999999999999887777665444444
No 157
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=31.81 E-value=1e+02 Score=29.69 Aligned_cols=45 Identities=11% Similarity=0.097 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhh
Q 041209 98 MDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFF 145 (412)
Q Consensus 98 ~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f 145 (412)
...+..+...++++|+++++++++|+.+++..++ +.+.+.+.+.+
T Consensus 221 ~~~~~~~~~~i~~~L~~~g~~~~did~~~~h~~~---~~~~~~~~~~l 265 (325)
T PRK12879 221 KWAVRTMPKGARQVLEKAGLTKDDIDWVIPHQAN---LRIIESLCEKL 265 (325)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCC---HHHHHHHHHHc
Confidence 3344566778999999999999999999999876 44456677776
No 158
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=31.73 E-value=1.2e+02 Score=28.97 Aligned_cols=44 Identities=11% Similarity=0.363 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhcCCCCCccceEEEecCC--cCcHHHHHHHHHhhC
Q 041209 103 KCMEPVEKCLRDSKIDKSQVHDVVLVGGS--TRIPKVQQLLQDFFN 146 (412)
Q Consensus 103 ~~~~~i~~~l~~a~~~~~~id~V~LvGGs--sriP~V~~~l~~~f~ 146 (412)
=....++++|+++++++++|+.|++...+ ...|.....+...++
T Consensus 54 la~~A~~~al~~agl~~~~Id~~i~~~~~~~~~~~~~a~~l~~~lG 99 (318)
T TIGR00747 54 MGFEAAKRAIENAGISKDDIDLIIVATTTPDHAFPSAACMVQAYLG 99 (318)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCChHHHHHHHHhC
Confidence 35667889999999999999988864432 245767777888884
No 159
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=31.67 E-value=76 Score=31.34 Aligned_cols=45 Identities=20% Similarity=0.298 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhhcCCCCCccceEEEecCC--cCcHHHHHHHHHhhC
Q 041209 102 RKCMEPVEKCLRDSKIDKSQVHDVVLVGGS--TRIPKVQQLLQDFFN 146 (412)
Q Consensus 102 ~~~~~~i~~~l~~a~~~~~~id~V~LvGGs--sriP~V~~~l~~~f~ 146 (412)
+=....++++|+++++++++||.|+++.-+ -.+|...-.|.+.++
T Consensus 62 ~la~~Aa~~aL~~a~~~~~dId~lI~~t~t~d~~~P~~a~~v~~~Lg 108 (353)
T PRK12880 62 DLGKHAANTLLQGLNIDKNSLDALIVVTQSPDFFMPSTACYLHQLLN 108 (353)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCCcHHHHHHHHhC
Confidence 334567889999999999999998866655 479999999999994
No 160
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=30.54 E-value=4.7e+02 Score=26.93 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhh----hcHHHHHHHHHHhhHHHHHHhhhhhcch
Q 041209 275 EEIERMVQEAEKYKA----EDEEIKKKVEAKNSLENYAYNMSNTVRD 317 (412)
Q Consensus 275 e~i~~~~~~~~~~~~----~D~~~~~~~~a~N~lE~~i~~~r~~l~~ 317 (412)
+++.+.+..+.++.. -+++.++...--|.+++|...++.+.+.
T Consensus 281 ~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~ 327 (622)
T COG5185 281 DNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQE 327 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 344444444444433 3555566666678899999888887765
No 161
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=30.28 E-value=1.9e+02 Score=20.88 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=24.5
Q ss_pred HHHhhHHHHHHhhhhhcchhhhhcCCCHHhHHHHHHHHHHHH
Q 041209 299 EAKNSLENYAYNMSNTVRDEKFAGKLDPADKQKIEKAIDEAI 340 (412)
Q Consensus 299 ~a~N~lE~~i~~~r~~l~~~~~~~~~~~~e~~~i~~~l~~~~ 340 (412)
.....++..+-.+...|..+.|....+++-.+.-+..+.++.
T Consensus 11 Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~ 52 (66)
T PF10458_consen 11 KELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELE 52 (66)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHH
Confidence 334456666677777777767776666655555444444433
No 162
>PRK14158 heat shock protein GrpE; Provisional
Probab=30.17 E-value=4.1e+02 Score=23.92 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=40.4
Q ss_pred HHHhhHHHHHHhhhhhcchhhhhcCCCHHhHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHH
Q 041209 299 EAKNSLENYAYNMSNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQLVEVDELEDKLKELKGFCNPIIAK 371 (412)
Q Consensus 299 ~a~N~lE~~i~~~r~~l~~~~~~~~~~~~e~~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r 371 (412)
.++-++|.|--+++...+. ...+....=...+...++.++.-|....+.+.+.+..-++.+.+.+..++.+
T Consensus 65 R~~AefeN~RkR~~kE~e~--~~~~a~~~~~~~lLpV~DnLerAl~~~~~~~~~~i~~Gv~mi~k~l~~vLek 135 (194)
T PRK14158 65 RERADLENYRKRVQKEKEE--LLKYGNESLILEILPAVDNMERALDHADEESMSAIIEGIRMTLSMLLSTLKK 135 (194)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHhHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666665555554443 4445555556677777777777776432223445555555555555555555
No 163
>PRK14878 UGMP family protein; Provisional
Probab=30.10 E-value=71 Score=31.17 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHH
Q 041209 97 NMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQ 138 (412)
Q Consensus 97 ~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~ 138 (412)
...-.+.+...++++|+++++++.+||.|.+.-|-..++.++
T Consensus 41 ~~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~gPG~~~~lr 82 (323)
T PRK14878 41 AQHHAEVAPELLRKALEKAGISIEDIDAVAVSQGPGLGPALR 82 (323)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccchH
Confidence 344556677889999999999999999999998766666555
No 164
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=29.73 E-value=27 Score=29.76 Aligned_cols=73 Identities=26% Similarity=0.354 Sum_probs=47.6
Q ss_pred eeEEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHh
Q 041209 83 DFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAY 162 (412)
Q Consensus 83 ~~~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~ 162 (412)
.+++-|=..+|++ .+.+++.+-..+.|...++..+++ .|+-|=|+--+|++-+.+.+. -+.|-.||+
T Consensus 7 ~~ri~IV~s~fn~---~I~~~Ll~ga~~~l~~~gv~~~~i-~v~~VPGa~EiP~a~~~l~~s---------~~~DavIaL 73 (141)
T PLN02404 7 GLRFGVVVARFNE---IITKNLLEGALETFKRYSVKEENI-DVVWVPGSFEIPVVAQRLAKS---------GKYDAILCI 73 (141)
T ss_pred CCEEEEEEecCcH---HHHHHHHHHHHHHHHHcCCCccce-EEEEcCcHHHHHHHHHHHHhc---------CCCCEEEEE
Confidence 3444444555654 344455555666677788776666 567899999999998777542 245667777
Q ss_pred HHHHHH
Q 041209 163 GAAVQA 168 (412)
Q Consensus 163 GAa~~a 168 (412)
||.+.+
T Consensus 74 G~VIrG 79 (141)
T PLN02404 74 GAVIRG 79 (141)
T ss_pred EEEEeC
Confidence 776554
No 165
>PRK10972 Z-ring-associated protein; Provisional
Probab=29.73 E-value=3.1e+02 Score=22.28 Aligned_cols=67 Identities=9% Similarity=0.152 Sum_probs=48.6
Q ss_pred HHHhhHHHHHHhhhhhcchhhhhcCCCHHhHHHHHHHHHHHHHHHcCC--CCcCHHHHHHHHHHHHHhHHHHHHHH
Q 041209 299 EAKNSLENYAYNMSNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGN--QLVEVDELEDKLKELKGFCNPIIAKM 372 (412)
Q Consensus 299 ~a~N~lE~~i~~~r~~l~~~~~~~~~~~~e~~~i~~~l~~~~~wl~~~--~~~~~~~~~~~~~~L~~~~~~i~~r~ 372 (412)
+|-+.|+..+-.+|+. ..+...|+-.+..+|+-.-++|... ......+++.++..|.+.++......
T Consensus 29 ~AA~~Ld~km~~ir~~-------~kv~~~EriavmaALNl~~ELl~~k~~~~~~~~~~~~rI~~L~~~ld~AL~~~ 97 (109)
T PRK10972 29 QAAEDLNQRLQDLKER-------TRVTNTEQLVFIAALNICYELAQEKAKTRDYAANMEQRIRMLQQTIEQALLEQ 97 (109)
T ss_pred HHHHHHHHHHHHHHHh-------cCCCcHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455555555543 2345678899999999999999862 23466899999999999999887653
No 166
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=29.70 E-value=33 Score=29.07 Aligned_cols=60 Identities=18% Similarity=0.308 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHH
Q 041209 99 DLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQA 168 (412)
Q Consensus 99 ~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a 168 (412)
.+.+++.+-..+.|++.++..++| .++-|=|+--+|++-+.+.+. -+.|-.|++||.+.+
T Consensus 13 ~i~~~L~~ga~~~l~~~g~~~~~i-~v~~VPGa~EiP~a~~~l~~~---------~~~DavI~LG~VIrG 72 (138)
T TIGR00114 13 DITDMLLKGAIDALKRLGAEVDNI-DVIWVPGAFELPLAVKKLAET---------GKYDAVIALGCVIRG 72 (138)
T ss_pred HHHHHHHHHHHHHHHHcCCCccce-EEEECCcHHHHHHHHHHHHhc---------CCCCEEEEEeeEEeC
Confidence 444555555667777888777666 466899999999998777543 235677777776543
No 167
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=29.65 E-value=31 Score=29.99 Aligned_cols=71 Identities=21% Similarity=0.082 Sum_probs=48.1
Q ss_pred eEEEEeHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHh
Q 041209 84 FYATITRARFEELN-MDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAY 162 (412)
Q Consensus 84 ~~~~itr~efe~~~-~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~ 162 (412)
+.+-|=..+|++.+ ..+++. ..+.|...+...++| .|+-|=|+--||++-+.+.+. -+.|-.||+
T Consensus 11 ~riaIV~srfn~~It~~Ll~g----A~~~l~~~G~~~~~i-~v~~VPGA~EiP~~a~~l~~~---------~~yDaiIaL 76 (158)
T PRK12419 11 QRIAFIQARWHADIVDQARKG----FVAEIAARGGAASQV-DIFDVPGAFEIPLHAQTLAKT---------GRYAAIVAA 76 (158)
T ss_pred CEEEEEEecCCHHHHHHHHHH----HHHHHHHcCCCccce-EEEECCcHHHHHHHHHHHHhc---------CCCCEEEEE
Confidence 44555555665533 344444 455566778777777 778999999999998776432 256788888
Q ss_pred HHHHHH
Q 041209 163 GAAVQA 168 (412)
Q Consensus 163 GAa~~a 168 (412)
||.+.+
T Consensus 77 G~VIrG 82 (158)
T PRK12419 77 ALVVDG 82 (158)
T ss_pred EEEEcC
Confidence 888765
No 168
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=29.41 E-value=85 Score=30.55 Aligned_cols=41 Identities=10% Similarity=0.161 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHH
Q 041209 98 MDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQ 138 (412)
Q Consensus 98 ~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~ 138 (412)
..-.+.+...++++|+++++++.+||.|.+.-|-..++.++
T Consensus 43 ~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~gPg~~~~l~ 83 (322)
T TIGR03722 43 EHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGPGLGPCLR 83 (322)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCchHHhHH
Confidence 44556677789999999999999999999998866666555
No 169
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=29.38 E-value=89 Score=25.73 Aligned_cols=31 Identities=10% Similarity=0.323 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccceEEEe
Q 041209 98 MDLFRKCMEPVEKCLRDSKIDKSQVHDVVLV 128 (412)
Q Consensus 98 ~~~~~~~~~~i~~~l~~a~~~~~~id~V~Lv 128 (412)
+.+.+.+.+++.++++..+++++||-+|+++
T Consensus 16 e~I~~at~eLl~~i~~~N~l~~~dIvSi~FT 46 (118)
T PF07736_consen 16 EEILEATRELLEEILERNELSPEDIVSIIFT 46 (118)
T ss_dssp HHHHHHHHHHHHHHHHHTT--GGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEEEEE
Confidence 3456777888899999999999999888765
No 170
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=29.19 E-value=1.4e+02 Score=31.31 Aligned_cols=83 Identities=20% Similarity=0.189 Sum_probs=55.7
Q ss_pred EEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHH-HHHHHhhCCCcccccC-CCchhHHhH
Q 041209 86 ATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQ-QLLQDFFNGKELCKSI-NPDEAVAYG 163 (412)
Q Consensus 86 ~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~-~~l~~~f~~~~~~~~~-~pd~aVA~G 163 (412)
.+..-.+|...++..++++..-+-.-+.+... .+.+.|.||...-=..- +.+.+.+ ...+.+.+ -.|.-.|.|
T Consensus 254 ~~~~~~diAasaQ~~lE~l~l~~~~~~~~~~g----~~~L~~AGGVAlNv~~N~~~l~~~~-f~dlfV~Pa~gD~G~AvG 328 (555)
T COG2192 254 STERAADIAASAQAYLEELVLEMLRYLREETG----EDNLALAGGVALNVKANGKLLRRGL-FEDLFVQPAMGDAGLAVG 328 (555)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccceEEccceeeeeeehHhHhhccc-CceeEecCCCCCcchHHH
Confidence 45566677777888888877665555444321 56899999987654444 5555555 44554444 458999999
Q ss_pred HHHHHHHHhC
Q 041209 164 AAVQAAILSG 173 (412)
Q Consensus 164 Aa~~a~~l~~ 173 (412)
||+++...-+
T Consensus 329 AAl~~~~~~~ 338 (555)
T COG2192 329 AALAVKRELG 338 (555)
T ss_pred HHHHHHHHhc
Confidence 9999887653
No 171
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=29.07 E-value=1.5e+02 Score=30.36 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHHhHHHHHHH
Q 041209 350 EVDELEDKLKELKGFCNPIIAK 371 (412)
Q Consensus 350 ~~~~~~~~~~~L~~~~~~i~~r 371 (412)
+.++|..+++.++.+-+--..|
T Consensus 711 d~key~~klek~eki~eir~qr 732 (840)
T KOG2003|consen 711 DAKEYADKLEKAEKIKEIREQR 732 (840)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 6778888888887665544455
No 172
>PLN03169 chalcone synthase family protein; Provisional
Probab=28.04 E-value=2.1e+02 Score=28.67 Aligned_cols=45 Identities=18% Similarity=0.320 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhhcCCCCCccceEEEecC-CcCcHHHHHHHHHhhC
Q 041209 102 RKCMEPVEKCLRDSKIDKSQVHDVVLVGG-STRIPKVQQLLQDFFN 146 (412)
Q Consensus 102 ~~~~~~i~~~l~~a~~~~~~id~V~LvGG-ssriP~V~~~l~~~f~ 146 (412)
+=....++++|+++++.+++||.|+++-- ...+|...-.|.+.++
T Consensus 108 ~La~~Aa~~aL~~ag~~~~dId~lI~~t~t~~~~P~~a~~l~~~LG 153 (391)
T PLN03169 108 QMAVEASLACIKEWGRPVSDITHLVYVSSSEARLPGGDLYLAKQLG 153 (391)
T ss_pred HHHHHHHHHHHHHhCCCHHHCCEEEEECcCCCCCCcHHHHHHHHhC
Confidence 33456688899999999999999876642 2268998888888883
No 173
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=27.34 E-value=2.2e+02 Score=27.25 Aligned_cols=45 Identities=11% Similarity=0.251 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhhcCCCCCccceEEEecCC--cCcHHHHHHHHHhhC
Q 041209 102 RKCMEPVEKCLRDSKIDKSQVHDVVLVGGS--TRIPKVQQLLQDFFN 146 (412)
Q Consensus 102 ~~~~~~i~~~l~~a~~~~~~id~V~LvGGs--sriP~V~~~l~~~f~ 146 (412)
+=....++++|+++++.+++||.|+....+ ...|.....|...++
T Consensus 55 ~la~~A~~~al~~ag~~~~~Id~li~~~~~~~~~~~~~a~~l~~~lg 101 (325)
T PRK12879 55 DLAIKAAERALARAGLDAEDIDLIIVATTTPDYLFPSTASQVQARLG 101 (325)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCChHHHHHHHHhC
Confidence 335667889999999999999998865432 357888888888884
No 174
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=27.07 E-value=1.6e+02 Score=28.12 Aligned_cols=43 Identities=21% Similarity=0.382 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhcCCCCCccceEEEecCCc--CcHHHHHHHHHhhC
Q 041209 104 CMEPVEKCLRDSKIDKSQVHDVVLVGGST--RIPKVQQLLQDFFN 146 (412)
Q Consensus 104 ~~~~i~~~l~~a~~~~~~id~V~LvGGss--riP~V~~~l~~~f~ 146 (412)
....++++|+++++.+++||.|+....+. ..|.....|...++
T Consensus 54 a~~A~~~al~~ag~~~~~Id~li~~~~~~~~~~~~~~~~l~~~lg 98 (320)
T cd00830 54 AVEAAKKALEDAGIDADDIDLIIVATSTPDYLFPATACLVQARLG 98 (320)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCCcHHHHHHHHhC
Confidence 45668889999999999999987654321 25778888888884
No 175
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=26.93 E-value=95 Score=29.96 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHH
Q 041209 96 LNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLL 141 (412)
Q Consensus 96 ~~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l 141 (412)
....-.+.+..+++++|+++++++.+||.|.+.-|-..++.+|--+
T Consensus 44 ~~~~H~~~l~~~i~~~l~~~~~~~~did~iav~~GPG~~tglrvg~ 89 (305)
T TIGR00329 44 ASRHHAENIPPLLERALIESNVDKSEIDLIAYTQGPGLGGSLRVGA 89 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCchhhHHHHH
Confidence 3445667777889999999999999999999999988888877433
No 176
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=26.83 E-value=1.7e+02 Score=27.80 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=30.9
Q ss_pred ccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHH
Q 041209 121 QVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAV 166 (412)
Q Consensus 121 ~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~ 166 (412)
++|.++| |+|.-|++++.|++.+|. .+ .-+|+..++|...+.
T Consensus 177 ~~DtlVL--GCTHyPll~~~i~~~~~~-~v-~lids~~~~a~~~~~ 218 (269)
T COG0796 177 GPDTLVL--GCTHYPLLKPEIQQVLGE-HV-ALIDSGAETARRLAR 218 (269)
T ss_pred CCCEEEE--eCcCcHHHHHHHHHHhCC-Cc-eEeCCHHHHHHHHHH
Confidence 4777666 999999999999999953 32 335777666666554
No 177
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=26.80 E-value=94 Score=30.05 Aligned_cols=42 Identities=17% Similarity=0.163 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhh
Q 041209 101 FRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFF 145 (412)
Q Consensus 101 ~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f 145 (412)
...+...++++|+++++++++|+.+++..++.++ .+.+.+.|
T Consensus 229 ~~~~~~~i~~~L~~~gl~~~did~~~~H~~~~~~---~~~i~~~l 270 (329)
T PRK07204 229 SKYLMKFIDKLLMDAGYTLADIDLIVPHQASGPA---MRLIRKKL 270 (329)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEeCCCCHHH---HHHHHHHc
Confidence 3456678899999999999999999999987643 45777777
No 178
>PHA02557 22 prohead core protein; Provisional
Probab=26.60 E-value=5.6e+02 Score=24.29 Aligned_cols=84 Identities=18% Similarity=0.238 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHhhHHHHHHhhhhhcchhhhhcCCCHHhHHHHHHHHHHHHHHHcCCCCcCHHHHH
Q 041209 276 EIERMVQEAEKYKAEDEEIKKKVEAKNSLENYAYNMSNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQLVEVDELE 355 (412)
Q Consensus 276 ~i~~~~~~~~~~~~~D~~~~~~~~a~N~lE~~i~~~r~~l~~~~~~~~~~~~e~~~i~~~l~~~~~wl~~~~~~~~~~~~ 355 (412)
.+..|..++.++. .+.....+..+.|+.++..+.+..--.+...-+++.+++++..++.-++- .+.|.
T Consensus 142 vV~em~~~L~E~e---~~~~~l~~en~~l~e~i~~~~r~~i~~e~t~gLtdsQkeKv~~L~Egvef---------~e~F~ 209 (271)
T PHA02557 142 VVAEMEEELDEME---EELNELFEENVALEEYINEVKREVILSEVTKDLTESQKEKVASLAEGLEF---------SETFS 209 (271)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHhccch---------hhHHH
Confidence 3445554444433 33344556666777776665542211235667788888888877665432 47799
Q ss_pred HHHHHHHHhHHHHHHH
Q 041209 356 DKLKELKGFCNPIIAK 371 (412)
Q Consensus 356 ~~~~~L~~~~~~i~~r 371 (412)
.|+..|...+.+....
T Consensus 210 ~kl~~i~E~v~~~~~~ 225 (271)
T PHA02557 210 KKLTAIVEMVFKSKDK 225 (271)
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999998888665443
No 179
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=26.45 E-value=1.6e+02 Score=29.26 Aligned_cols=42 Identities=14% Similarity=0.187 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhcCCCCCccceEEEec---CCcCcHHHHHHHHHhhC
Q 041209 104 CMEPVEKCLRDSKIDKSQVHDVVLVG---GSTRIPKVQQLLQDFFN 146 (412)
Q Consensus 104 ~~~~i~~~l~~a~~~~~~id~V~LvG---GssriP~V~~~l~~~f~ 146 (412)
....++++|+++++++++||.|++ | +....|..-..+...++
T Consensus 26 a~~A~~~AL~dAgl~~~dID~vi~-~~~~~~~~~~~~a~~v~~~lG 70 (386)
T cd00751 26 GAAVIKALLERAGLDPEEVDDVIM-GNVLQAGEGQNPARQAALLAG 70 (386)
T ss_pred HHHHHHHHHHhcCCCHHHCCEEEE-EeccCCCCCChHHHHHHHHcC
Confidence 345688899999999999999885 3 11123555555666663
No 180
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=26.31 E-value=4.6e+02 Score=23.86 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHcC
Q 041209 332 IEKAIDEAIEWLDG 345 (412)
Q Consensus 332 i~~~l~~~~~wl~~ 345 (412)
...+++-...+|++
T Consensus 104 ~~~lv~~ck~Fl~~ 117 (205)
T PF12238_consen 104 YNGLVKFCKDFLDS 117 (205)
T ss_pred HHHHHHHHHHHhcc
Confidence 34444444445543
No 181
>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.
Probab=26.28 E-value=1.5e+02 Score=28.39 Aligned_cols=45 Identities=13% Similarity=0.261 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhcCCCCCccceEEEecCC--cCcHHHHHHHHHhhC
Q 041209 102 RKCMEPVEKCLRDSKIDKSQVHDVVLVGGS--TRIPKVQQLLQDFFN 146 (412)
Q Consensus 102 ~~~~~~i~~~l~~a~~~~~~id~V~LvGGs--sriP~V~~~l~~~f~ 146 (412)
+-....++++|+++++++++||.|++..-. ...|.+...|...++
T Consensus 50 ~l~~~a~~~aL~~ag~~~~~Id~li~~~~~~~~~~~~~~~~i~~~lg 96 (324)
T cd00827 50 TMAVEAARRALERAGIDPDDIGLLIVATESPIDKGKSAATYLAELLG 96 (324)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCccHHHHHHHHcC
Confidence 334567888999999999999998863321 225667777888884
No 182
>PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=26.26 E-value=1.5e+02 Score=29.80 Aligned_cols=43 Identities=9% Similarity=0.048 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhcCCCCCccceEEEecCCcCc--HHHHHHHHHhhC
Q 041209 103 KCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRI--PKVQQLLQDFFN 146 (412)
Q Consensus 103 ~~~~~i~~~l~~a~~~~~~id~V~LvGGssri--P~V~~~l~~~f~ 146 (412)
.....++++|+++++ +++||.|..-|-+|.. +.=.+.|++.|+
T Consensus 281 ~~~~am~~AL~~Agl-~~~IdyI~ahgtgT~~~D~~E~~Ai~~~f~ 325 (398)
T PRK06519 281 DLEASLERLLKPAGG-LAAPTAVISGATGAHPATAEEKAALEAALA 325 (398)
T ss_pred HHHHHHHHHHHHCCC-cccCCEEEeCCCCCCCccHHHHHHHHHHcC
Confidence 345789999999999 7999999999988876 444567888884
No 183
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=26.12 E-value=1.4e+02 Score=28.57 Aligned_cols=44 Identities=11% Similarity=0.127 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhh
Q 041209 99 DLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFF 145 (412)
Q Consensus 99 ~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f 145 (412)
-..+.+...++++|+++++.+++|+.+++..++- .+.+.+.+.+
T Consensus 220 ~~~~~~~~~i~~~l~~~g~~~~di~~~~~h~~~~---~~~~~~~~~l 263 (320)
T cd00830 220 FAVRLMPESIEEALEKAGLTPDDIDWFVPHQANL---RIIEAVAKRL 263 (320)
T ss_pred HHHHhhHHHHHHHHHHcCCCHHHCCEEEECCCCH---HHHHHHHHHh
Confidence 3445667889999999999999999999998864 4445577777
No 184
>PLN02920 pantothenate kinase 1
Probab=26.04 E-value=2.1e+02 Score=28.84 Aligned_cols=49 Identities=10% Similarity=-0.111 Sum_probs=37.0
Q ss_pred CccceEEEecCCcCcH-HHHHHHHHhh-----CCCcccccCCCchhHHhHHHHHH
Q 041209 120 SQVHDVVLVGGSTRIP-KVQQLLQDFF-----NGKELCKSINPDEAVAYGAAVQA 168 (412)
Q Consensus 120 ~~id~V~LvGGssriP-~V~~~l~~~f-----~~~~~~~~~~pd~aVA~GAa~~a 168 (412)
..++.|+++|...|.| ...+.|.-.+ +..+....-+...+-|+||.+..
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~ 350 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSY 350 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhc
Confidence 4588999999999998 7777554433 34556666788899999998754
No 185
>PLN00415 3-ketoacyl-CoA synthase
Probab=25.69 E-value=1.5e+02 Score=30.65 Aligned_cols=41 Identities=7% Similarity=0.221 Sum_probs=32.7
Q ss_pred HHHHHHHhhcCCCCCccceEEEecCC-cCcHHHHHHHHHhhC
Q 041209 106 EPVEKCLRDSKIDKSQVHDVVLVGGS-TRIPKVQQLLQDFFN 146 (412)
Q Consensus 106 ~~i~~~l~~a~~~~~~id~V~LvGGs-sriP~V~~~l~~~f~ 146 (412)
..++++|+++++++++||.|+..+-. ...|.+.-.|.+.++
T Consensus 140 ~A~~~aL~~aGi~p~dID~LIvs~T~~~~~Pslaa~l~~~LG 181 (466)
T PLN00415 140 GALNSLFKKTGIEPREVGIFIVNCSLFNPNPSLSSMIVNRYK 181 (466)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEECcCCCCCchHHHHHHHHhC
Confidence 45778899999999999998755322 247999999999984
No 186
>PRK14878 UGMP family protein; Provisional
Probab=25.69 E-value=1.5e+02 Score=28.87 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=22.1
Q ss_pred cceEEEecCCcCcHHHHHHHHHhh
Q 041209 122 VHDVVLVGGSTRIPKVQQLLQDFF 145 (412)
Q Consensus 122 id~V~LvGGssriP~V~~~l~~~f 145 (412)
+..|+|.||.+.-.++++.+.+.+
T Consensus 242 ~~~vvlsGGVa~N~~L~~~l~~~~ 265 (323)
T PRK14878 242 KKEVLLVGGVAANRRLREKLEIMA 265 (323)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHH
Confidence 678999999999999999999876
No 187
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=25.67 E-value=1.4e+02 Score=28.77 Aligned_cols=46 Identities=24% Similarity=0.391 Sum_probs=38.7
Q ss_pred EEEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCc
Q 041209 85 YATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGST 132 (412)
Q Consensus 85 ~~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGss 132 (412)
--.+|-++|++.+-|.+.+|...+++-+.+.++.+ +-.|+..-|+.
T Consensus 217 ageLspe~f~e~s~PYl~~I~~~Vk~rl~~~~~~~--vPmi~fakG~g 262 (359)
T KOG2872|consen 217 AGELSPEDFEEFSLPYLRQIAEAVKKRLPELGLAP--VPMILFAKGSG 262 (359)
T ss_pred cccCCHHHHHHhhhHHHHHHHHHHHHhhhhhcCCC--CceEEEEcCcc
Confidence 34789999999999999999999999998887655 67777777765
No 188
>PRK06158 thiolase; Provisional
Probab=25.64 E-value=1.7e+02 Score=29.28 Aligned_cols=40 Identities=8% Similarity=0.191 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhh
Q 041209 104 CMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFF 145 (412)
Q Consensus 104 ~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f 145 (412)
..+.++++|+++++++++||.|+........|. ..+.+.+
T Consensus 32 ~~eA~~~Al~dAgl~~~dID~iv~~~~~~~~~~--~~la~~l 71 (384)
T PRK06158 32 LAQAAHRALADAGLTMADVDGLFTASPDDALWG--LSVAEYL 71 (384)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEecCCCCCcH--HHHHHHc
Confidence 445678899999999999999886443344554 2466666
No 189
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=25.51 E-value=2e+02 Score=28.60 Aligned_cols=43 Identities=9% Similarity=0.162 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhcCCCCCccceEEEecCC--cCcHHHHHHHHHhhC
Q 041209 104 CMEPVEKCLRDSKIDKSQVHDVVLVGGS--TRIPKVQQLLQDFFN 146 (412)
Q Consensus 104 ~~~~i~~~l~~a~~~~~~id~V~LvGGs--sriP~V~~~l~~~f~ 146 (412)
....++++|+++++++++||.|++.-.+ ..+|.....|...++
T Consensus 67 a~~A~~~aL~~agi~~~dId~li~~s~~~~~~~p~~a~~v~~~Lg 111 (378)
T PRK06816 67 AAEAIRDLLDDAGFSLGDIELLACGTSQPDQLMPGHASMVHGELG 111 (378)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEEECCCCcCChHHHHHHHhhCC
Confidence 4556888999999999999998775433 246776667777774
No 190
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=25.27 E-value=1.6e+02 Score=28.18 Aligned_cols=44 Identities=18% Similarity=0.202 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhh
Q 041209 99 DLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFF 145 (412)
Q Consensus 99 ~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f 145 (412)
..+..+...++++|+++++++++|+.+++..++ +.+.+.+.+.+
T Consensus 216 ~~~~~~~~~~~~~l~~~g~~~~di~~~~~h~~~---~~~~~~~~~~l 259 (318)
T TIGR00747 216 HAVRKMGDVVEETLEANGLDPEDIDWFVPHQAN---LRIIEALAKRL 259 (318)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCC---HHHHHHHHHHc
Confidence 344556678899999999999999999998886 34555677777
No 191
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=25.24 E-value=2.1e+02 Score=27.28 Aligned_cols=44 Identities=18% Similarity=0.304 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhcCCCCCccceEEEecCCc--CcHHHHHHHHHhhC
Q 041209 103 KCMEPVEKCLRDSKIDKSQVHDVVLVGGST--RIPKVQQLLQDFFN 146 (412)
Q Consensus 103 ~~~~~i~~~l~~a~~~~~~id~V~LvGGss--riP~V~~~l~~~f~ 146 (412)
=....++++|+++++.+++||.|++..++. ..|.....|...++
T Consensus 55 la~~A~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~~~i~~~lG 100 (319)
T PRK09352 55 LATEAAKKALEAAGIDPEDIDLIIVATTTPDYAFPSTACLVQARLG 100 (319)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCchHHHHHHHHhC
Confidence 355678889999999999999987643321 26777778888884
No 192
>PRK06366 acetyl-CoA acetyltransferase; Provisional
Probab=24.88 E-value=1.8e+02 Score=29.03 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhcCCCCCccceEEE
Q 041209 104 CMEPVEKCLRDSKIDKSQVHDVVL 127 (412)
Q Consensus 104 ~~~~i~~~l~~a~~~~~~id~V~L 127 (412)
....++++|+++++++++||.|++
T Consensus 30 ~~~a~~~al~dagi~~~dID~vi~ 53 (388)
T PRK06366 30 GGAAIKAVIDDAKLDPALVQEVIM 53 (388)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEE
Confidence 456688899999999999999985
No 193
>PLN03171 chalcone synthase-like protein; Provisional
Probab=24.66 E-value=2e+02 Score=28.95 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccceEEEecCC-cCcHHHHHHHHHhhC
Q 041209 99 DLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGS-TRIPKVQQLLQDFFN 146 (412)
Q Consensus 99 ~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGs-sriP~V~~~l~~~f~ 146 (412)
...+=....++++|+++++++++||.|+++-.+ -.+|...-.|.+.++
T Consensus 107 ~a~~la~~Aa~~aL~~ag~~~~dId~li~~t~t~~~~P~~a~~v~~~LG 155 (399)
T PLN03171 107 AVPELAAEAAKKAIAEWGRPAADITHLVVTTNSGAHIPGVDFRLVPLLG 155 (399)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCchHHHHHHHhC
Confidence 344445667889999999999999999883222 248999999999984
No 194
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=24.61 E-value=77 Score=30.01 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHH
Q 041209 98 MDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLL 141 (412)
Q Consensus 98 ~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l 141 (412)
+.-.+.+...++++|+++++++++||.|...-|-.....+|=-+
T Consensus 27 r~H~~~L~~~i~~~l~~~~~~~~did~iavt~GPGsftgLrvG~ 70 (268)
T PF00814_consen 27 RQHSENLPPLIEELLKEAGISLSDIDAIAVTRGPGSFTGLRVGL 70 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-GGGESEEEEEEESS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccccHHHH
Confidence 34566777889999999999999999999988887777776444
No 195
>PF06075 DUF936: Plant protein of unknown function (DUF936); InterPro: IPR010341 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=24.49 E-value=1.6e+02 Score=31.40 Aligned_cols=63 Identities=13% Similarity=0.208 Sum_probs=40.6
Q ss_pred HHHHhhhhhcchhhhhcC--CCHHhHHHHHHHHHHHHHHHcCC-CCcC-HHHHHHHHHHHHHhHHHHH
Q 041209 306 NYAYNMSNTVRDEKFAGK--LDPADKQKIEKAIDEAIEWLDGN-QLVE-VDELEDKLKELKGFCNPII 369 (412)
Q Consensus 306 ~~i~~~r~~l~~~~~~~~--~~~~e~~~i~~~l~~~~~wl~~~-~~~~-~~~~~~~~~~L~~~~~~i~ 369 (412)
.|+-.+++.|+.+ |... ....+...+...|..+.+||+.- ...+ .+...++++.|++++-.+.
T Consensus 501 WFL~FVE~aLD~g-f~~~~~~~~~~IA~~LsQLKrVNdWLD~v~~~~~~~~~~~E~ierLrkKIY~fL 567 (579)
T PF06075_consen 501 WFLKFVEKALDAG-FKKSRGEDDGQIAGMLSQLKRVNDWLDEVGSGSNESEELVETIERLRKKIYGFL 567 (579)
T ss_pred HHHHHHHHHHhcc-chhcccCCCcchHHHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHH
Confidence 4555566666652 3332 23466777999999999999972 2222 3566777788876665544
No 196
>PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II
Probab=24.40 E-value=98 Score=32.61 Aligned_cols=45 Identities=27% Similarity=0.237 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhcCCCCCccceEEEecCCcCc--HHHHHHHHHhhCC
Q 041209 103 KCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRI--PKVQQLLQDFFNG 147 (412)
Q Consensus 103 ~~~~~i~~~l~~a~~~~~~id~V~LvGGssri--P~V~~~l~~~f~~ 147 (412)
.....++++|+++++++++|++|...|=+|.. +.=.+.|.+.|+.
T Consensus 406 g~~~am~~AL~~AGl~p~dIdyInaHGTGT~~gD~~E~~Ai~~~Fg~ 452 (540)
T PLN02787 406 GVILCIEKALAQSGVSKEDVNYINAHATSTKAGDLKEYQALMRCFGQ 452 (540)
T ss_pred HHHHHHHHHHHHcCCCHHHCcEEEccCccCCCCCHHHHHHHHHHhCC
Confidence 45578999999999999999999999988766 3445678888853
No 197
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=24.40 E-value=1.4e+02 Score=23.66 Aligned_cols=44 Identities=23% Similarity=0.409 Sum_probs=29.2
Q ss_pred EEEEEEecCc-eeEEEEEEeccCCceeecCCCCCCHHHHHHHHHHHHHH
Q 041209 240 INVCFDIDAN-GILHVSAKDKTAGITITNDKGRLSKEEIERMVQEAEKY 287 (412)
Q Consensus 240 i~v~f~id~~-g~l~v~a~~~~t~i~i~~~~~~ls~e~i~~~~~~~~~~ 287 (412)
..+.|.+|.+ |.+.|++.+..|+=.|. .+..+++-.+.+.+.++
T Consensus 55 ~~l~F~vde~~~~~vVkViD~~T~eVIR----qIP~Ee~l~l~~~l~e~ 99 (107)
T PF03646_consen 55 TSLRFSVDEESGRVVVKVIDKETGEVIR----QIPPEELLDLAKRLREL 99 (107)
T ss_dssp --EEEEEEEETTEEEEEEEETTT-SEEE----EE-HHHHHHHHHHHHHH
T ss_pred CceEEEEecCCCcEEEEEEECCCCcEEE----eCCcHHHHHHHHHHHHH
Confidence 5789999886 88999999999983332 35677777776665553
No 198
>cd06152 YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=24.32 E-value=2e+02 Score=23.27 Aligned_cols=53 Identities=17% Similarity=0.113 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCccce--EEEecCC--cCcHHHHHHHHHhhCC
Q 041209 91 ARFEELNMDLFRKCMEPVEKCLRDSK-IDKSQVHD--VVLVGGS--TRIPKVQQLLQDFFNG 147 (412)
Q Consensus 91 ~efe~~~~~~~~~~~~~i~~~l~~a~-~~~~~id~--V~LvGGs--sriP~V~~~l~~~f~~ 147 (412)
.+|++.++..++. ++.+|+.+| .++++|=. |+|+.-+ ..++.+.+...++|++
T Consensus 30 ~d~~~Q~~~~~~N----l~~~L~~aG~~~~~dVvk~tvyltd~~~~~~~~~~~~~~~~~f~~ 87 (114)
T cd06152 30 EDLEEEIDQAFDN----VELALKAAGGKGWEQVYKVNSYHVDIKNEEAFGLMVENFKKWMPN 87 (114)
T ss_pred cCHHHHHHHHHHH----HHHHHHHhCCCCHHHEEEEEEEEecCCcHHHHHHHHHHHHHHcCC
Confidence 3565555555544 677788889 99988755 7788752 6788998888899954
No 199
>PRK07801 acetyl-CoA acetyltransferase; Provisional
Probab=24.09 E-value=2.2e+02 Score=28.33 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhcCCCCCccceEEE
Q 041209 104 CMEPVEKCLRDSKIDKSQVHDVVL 127 (412)
Q Consensus 104 ~~~~i~~~l~~a~~~~~~id~V~L 127 (412)
....++++|+++++++++||.|++
T Consensus 30 ~~~a~~~al~dagl~~~~ID~vv~ 53 (382)
T PRK07801 30 GAHVLKGLVDRTGIDPAAVDDVIF 53 (382)
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEE
Confidence 456788889999999999999885
No 200
>PRK06954 acetyl-CoA acetyltransferase; Provisional
Probab=24.07 E-value=1.6e+02 Score=29.60 Aligned_cols=24 Identities=13% Similarity=0.336 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhcCCCCCccceEEE
Q 041209 104 CMEPVEKCLRDSKIDKSQVHDVVL 127 (412)
Q Consensus 104 ~~~~i~~~l~~a~~~~~~id~V~L 127 (412)
....++++|+++++++++||.|++
T Consensus 35 ~~~a~~~aL~~Agi~~~dID~vi~ 58 (397)
T PRK06954 35 GAAAIAAAVERAGLKPEQIDEVVM 58 (397)
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEE
Confidence 356688899999999999999875
No 201
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=23.97 E-value=1.3e+02 Score=29.83 Aligned_cols=46 Identities=15% Similarity=0.129 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHH
Q 041209 95 ELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQL 140 (412)
Q Consensus 95 ~~~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~ 140 (412)
.....-.+.+..+++++|+++++++++||.|-.+-|-...+.++=-
T Consensus 44 ~a~r~H~~~l~~~i~~~l~~a~~~~~did~Iavt~GPGl~~~LrVG 89 (345)
T PTZ00340 44 ETAQHHREHILSLVKEALEEAKITPSDISLICYTKGPGMGAPLSVG 89 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHhhHHHH
Confidence 4456677888899999999999999999999999988776766533
No 202
>cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria. CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine.
Probab=23.64 E-value=1.8e+02 Score=29.19 Aligned_cols=46 Identities=13% Similarity=0.093 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhhcCCCCCccceEEEecCCcCc--HHHHHHHHHhhCC
Q 041209 102 RKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRI--PKVQQLLQDFFNG 147 (412)
Q Consensus 102 ~~~~~~i~~~l~~a~~~~~~id~V~LvGGssri--P~V~~~l~~~f~~ 147 (412)
......++++|+++++++++|+.|...|=++.. +.-.+.|++.|+.
T Consensus 270 ~~~~~a~~~al~~ag~~~~~i~~v~~hgtgt~~~D~~E~~al~~~fg~ 317 (399)
T cd00832 270 PGLARAIRLALADAGLTPEDVDVVFADAAGVPELDRAEAAALAAVFGP 317 (399)
T ss_pred HHHHHHHHHHHHHcCCCHHHccEEEeccCcCCCCCHHHHHHHHHHhCC
Confidence 345577899999999999999999998877765 5667788999954
No 203
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=23.63 E-value=2.3e+02 Score=27.99 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=35.3
Q ss_pred CccceEEEecCCcCc-HHHHHHHH---Hhh--CCCcccccCCCchhHHhHHHHHH
Q 041209 120 SQVHDVVLVGGSTRI-PKVQQLLQ---DFF--NGKELCKSINPDEAVAYGAAVQA 168 (412)
Q Consensus 120 ~~id~V~LvGGssri-P~V~~~l~---~~f--~~~~~~~~~~pd~aVA~GAa~~a 168 (412)
..+..|+++|...|. |...+.|. +++ +..++...-+...+-|+||.+..
T Consensus 286 ~~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~~ 340 (341)
T PF03630_consen 286 HGVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLKH 340 (341)
T ss_dssp HT--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHTH
T ss_pred cCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHhc
Confidence 347899999999975 78888888 444 23455566688999999998753
No 204
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=23.48 E-value=3.5e+02 Score=26.48 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhcCCCCCccceEEEecCC--cCcHHHHHHHHHhhC
Q 041209 102 RKCMEPVEKCLRDSKIDKSQVHDVVLVGGS--TRIPKVQQLLQDFFN 146 (412)
Q Consensus 102 ~~~~~~i~~~l~~a~~~~~~id~V~LvGGs--sriP~V~~~l~~~f~ 146 (412)
+-.....+++|+++++++++||.|++.-=+ -.+|...-.|++.++
T Consensus 54 ~la~~Aa~~AL~~Agi~~~dIDlII~aT~tpd~~~Ps~A~~vq~~LG 100 (323)
T COG0332 54 DLAVEAARKALEDAGISPDDIDLIIVATSTPDHLFPSTACLVQARLG 100 (323)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEcCCcccCCChHHHHHHHHhC
Confidence 334567889999999999999999987755 457999999999994
No 205
>PRK06205 acetyl-CoA acetyltransferase; Provisional
Probab=23.15 E-value=1.9e+02 Score=29.20 Aligned_cols=42 Identities=12% Similarity=0.185 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhcCCCCCccceEEEec--CCcCcHHHHHHHHHhh
Q 041209 104 CMEPVEKCLRDSKIDKSQVHDVVLVG--GSTRIPKVQQLLQDFF 145 (412)
Q Consensus 104 ~~~~i~~~l~~a~~~~~~id~V~LvG--GssriP~V~~~l~~~f 145 (412)
....++++|+++++++++||.|++-- +....|.+...+....
T Consensus 30 a~~A~~~AL~~agl~~~dID~vv~g~~~~~~~~~~~a~~va~~~ 73 (404)
T PRK06205 30 AATVIRALVERTGIDPARIDDVIFGQGYPNGEAPAIGRVAALDA 73 (404)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEEeccCCCCCChHHHHHHHHc
Confidence 34568889999999999999987421 1112355555666666
No 206
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=22.93 E-value=1.6e+02 Score=29.83 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhhCCCcccccCCCchhHHhHHHHHH
Q 041209 101 FRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQA 168 (412)
Q Consensus 101 ~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a 168 (412)
.+.+.+.++++|++++++.+++..|..+|... ..+...|+ ... .++--.|.++||.++.
T Consensus 178 ~~~a~~~l~~~l~~~Gl~~~di~~i~~TGyGR------~~i~~~~~-ad~--iv~EItaha~GA~~L~ 236 (404)
T TIGR03286 178 IESAEEAVERALEEAGVSLEDVEAIGTTGYGR------FTIGEHFG-ADL--IQEELTVNSKGAVYLA 236 (404)
T ss_pred HHHHHHHHHHHHHHcCCCccceeEEEeeeecH------HHHhhhcC-CCc--eEEEEhhHHHHHHHhc
Confidence 55677788889999999999999999999874 44444552 221 1233477789998764
No 207
>cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.
Probab=22.87 E-value=3.6e+02 Score=26.67 Aligned_cols=38 Identities=13% Similarity=0.290 Sum_probs=27.3
Q ss_pred EEEeHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccce
Q 041209 86 ATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHD 124 (412)
Q Consensus 86 ~~itr~efe~~~~~~~~~~~~~i~~~l~~a~~~~~~id~ 124 (412)
..+++.++..+ .+..+-....+.++|+++++++.+++.
T Consensus 58 ~~~~~~~~~~~-~~~~~l~~~aa~~AL~dAgl~~~~~~~ 95 (406)
T cd00834 58 DYLDRKELRRM-DRFAQFALAAAEEALADAGLDPEELDP 95 (406)
T ss_pred hcCCHHHhccC-CHHHHHHHHHHHHHHHHcCCCcccCCc
Confidence 45667666543 566666778899999999998876554
No 208
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=22.77 E-value=1.2e+02 Score=29.22 Aligned_cols=25 Identities=24% Similarity=0.537 Sum_probs=22.6
Q ss_pred ccceEEEecCCcCcHHHHHHHHHhh
Q 041209 121 QVHDVVLVGGSTRIPKVQQLLQDFF 145 (412)
Q Consensus 121 ~id~V~LvGGssriP~V~~~l~~~f 145 (412)
.++.|+|.||...-..+++.|.+.+
T Consensus 258 g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 258 GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 3678999999999999999998887
No 209
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=22.69 E-value=1.7e+02 Score=22.96 Aligned_cols=45 Identities=13% Similarity=0.293 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCccce--EEEecCCcCcHHHHHHHHHhhC
Q 041209 101 FRKCMEPVEKCLRDSKIDKSQVHD--VVLVGGSTRIPKVQQLLQDFFN 146 (412)
Q Consensus 101 ~~~~~~~i~~~l~~a~~~~~~id~--V~LvGGssriP~V~~~l~~~f~ 146 (412)
...+.+-++.+|+.+|.++++|=. ++|+ ..+..+.+.+...++|+
T Consensus 28 ~~~v~~ni~~~L~~aG~~~~dVv~~~iyl~-d~~~~~~~n~~~~~~f~ 74 (101)
T cd06155 28 MESIFSKLREILQSNGLSLSDILYVTLYLR-DMSDFAEVNSVYGTFFD 74 (101)
T ss_pred HHHHHHHHHHHHHHcCCCHHHEEEEEEEEC-CHHHHHHHHHHHHHHcC
Confidence 334445577788889999888755 4454 57889999999999995
No 210
>PRK08170 acetyl-CoA acetyltransferase; Provisional
Probab=22.58 E-value=2e+02 Score=29.28 Aligned_cols=41 Identities=10% Similarity=0.202 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhcCCCCCccceEEEecCC---cCcHHHHHHHHHhh
Q 041209 104 CMEPVEKCLRDSKIDKSQVHDVVLVGGS---TRIPKVQQLLQDFF 145 (412)
Q Consensus 104 ~~~~i~~~l~~a~~~~~~id~V~LvGGs---sriP~V~~~l~~~f 145 (412)
....++++|+++++++++||.|++ |-+ ...+.+-..+...+
T Consensus 31 ~~~A~~~Al~dAgl~~~dID~vi~-g~~~~~~~~~~~a~~v~~~l 74 (426)
T PRK08170 31 AVAAGRALLNRQPFAPDDLDEVIL-GCAMPSPDEANIARVVALRL 74 (426)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEE-EeccCCCCcChHHHHHHHHh
Confidence 355688899999999999999885 311 12334444566666
No 211
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=22.48 E-value=88 Score=30.01 Aligned_cols=44 Identities=7% Similarity=0.053 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhh
Q 041209 99 DLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFF 145 (412)
Q Consensus 99 ~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f 145 (412)
..+..+.+.++++|+++++++++|+.+++-.++. .+.+.+.+.+
T Consensus 216 ~~~~~~~~~i~~~l~~~g~~~~di~~~~~h~~~~---~~~~~~~~~l 259 (319)
T PRK09352 216 FAVRELAKVAREALEAAGLTPEDIDWLVPHQANL---RIIDATAKKL 259 (319)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCH---HHHHHHHHHh
Confidence 3445667789999999999999999999987753 3445666666
No 212
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=22.47 E-value=2e+02 Score=29.08 Aligned_cols=26 Identities=12% Similarity=0.225 Sum_probs=23.8
Q ss_pred CccceEEEecCCc-CcHHHHHHHHHhh
Q 041209 120 SQVHDVVLVGGST-RIPKVQQLLQDFF 145 (412)
Q Consensus 120 ~~id~V~LvGGss-riP~V~~~l~~~f 145 (412)
..+|.|+++||-. .-+.|++.|.+.+
T Consensus 322 g~vDaiVfTGGIgE~s~~lr~~I~~~l 348 (402)
T PRK00180 322 GRLDAIVFTAGIGENSALVREKVLEGL 348 (402)
T ss_pred CCCCEEEEcCccccCCHHHHHHHHhhh
Confidence 3599999999999 9999999999887
No 213
>COG5418 Predicted secreted protein [Function unknown]
Probab=22.41 E-value=1.5e+02 Score=25.35 Aligned_cols=41 Identities=20% Similarity=0.519 Sum_probs=30.2
Q ss_pred EEEeHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCccceEEEec
Q 041209 86 ATITRARFEEL-NMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVG 129 (412)
Q Consensus 86 ~~itr~efe~~-~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvG 129 (412)
-.+||++|+.. .+.+.+++..+|-++|.+-. ++.+ .+++||
T Consensus 63 ~~~tke~~d~~~yRr~c~ki~~pi~~~l~e~k--~d~~-kii~IG 104 (164)
T COG5418 63 PPMTKEVFDHPGYRRVCRKIADPIGRVLEEEK--PDGI-KIIFIG 104 (164)
T ss_pred CCcCHHHhcchhHHHHHHHHHHHHHHHHHHhC--cCCc-eEEEEe
Confidence 36899999985 57788888888888887644 3333 667777
No 214
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=22.40 E-value=1.3e+02 Score=29.24 Aligned_cols=65 Identities=11% Similarity=0.077 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHH------hhCCCcccccCCCchhHHh
Q 041209 96 LNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQD------FFNGKELCKSINPDEAVAY 162 (412)
Q Consensus 96 ~~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~------~f~~~~~~~~~~pd~aVA~ 162 (412)
....-.+.+...++++|++++++..+||.|.++-|-...+.+|=-+.- .+ + .+...++-.++.|.
T Consensus 45 ~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~GPGsftglrig~~~Ak~la~~~-~-~p~~~v~h~~aha~ 115 (314)
T TIGR03723 45 ASRAHLEAIPPLIEEALAEAGLTLSDIDAIAVTAGPGLIGALLVGVSFAKALALAL-N-KPLIGVNHLEGHLL 115 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCChHHhHHHHHHHHHHHHHHh-C-CCEEecccHHHHHH
Confidence 345567777888999999999999999999999998888888654432 23 3 33445565566654
No 215
>PRK06445 acetyl-CoA acetyltransferase; Provisional
Probab=22.34 E-value=2e+02 Score=28.83 Aligned_cols=24 Identities=8% Similarity=0.331 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhcCCCCCccceEEE
Q 041209 104 CMEPVEKCLRDSKIDKSQVHDVVL 127 (412)
Q Consensus 104 ~~~~i~~~l~~a~~~~~~id~V~L 127 (412)
....++++|+++++++++||.|++
T Consensus 36 ~~~a~~~AL~~agl~~~dID~vi~ 59 (394)
T PRK06445 36 AAMLINRLIEKTGIKPEEIDDIIT 59 (394)
T ss_pred HHHHHHHHHHHcCCCHHHCCeeEE
Confidence 455688899999999999998875
No 216
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=22.11 E-value=1.2e+02 Score=24.97 Aligned_cols=31 Identities=13% Similarity=0.320 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccceEEEe
Q 041209 98 MDLFRKCMEPVEKCLRDSKIDKSQVHDVVLV 128 (412)
Q Consensus 98 ~~~~~~~~~~i~~~l~~a~~~~~~id~V~Lv 128 (412)
+.+++.+.+++.++++..++.+++|-+|+++
T Consensus 16 e~I~~at~eLl~~i~~~N~l~~edivSv~FT 46 (117)
T cd02185 16 EEILEATRELLEEIIERNNIKPEDIISVIFT 46 (117)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEEEEE
Confidence 3456677788889999999999998887764
No 217
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=22.08 E-value=1.2e+02 Score=26.59 Aligned_cols=50 Identities=22% Similarity=0.454 Sum_probs=34.2
Q ss_pred CCCccceEEEecCCcCc-----HH---HHHHHHHhhCCCcccccCCCchhHHhHHHHHHHHHhC
Q 041209 118 DKSQVHDVVLVGGSTRI-----PK---VQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 173 (412)
Q Consensus 118 ~~~~id~V~LvGGssri-----P~---V~~~l~~~f~~~~~~~~~~pd~aVA~GAa~~a~~l~~ 173 (412)
..+++|.|++.||.... |+ +.+.|+..+. .--|-.+|+.|+-+.+..+.+
T Consensus 43 ~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~------~~~pilgiC~G~q~l~~~lGG 100 (188)
T cd01741 43 DLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALA------AGKPVLGICLGHQLLARALGG 100 (188)
T ss_pred CcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHH------CCCCEEEECccHHHHHHHhCC
Confidence 34678999999997643 33 4445555541 125778999999988877754
No 218
>COG4755 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.06 E-value=4.7e+02 Score=21.85 Aligned_cols=16 Identities=13% Similarity=0.459 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHcC
Q 041209 330 QKIEKAIDEAIEWLDG 345 (412)
Q Consensus 330 ~~i~~~l~~~~~wl~~ 345 (412)
..+.+.|+.+..||.+
T Consensus 58 ~hm~rtLKaFd~WLqd 73 (151)
T COG4755 58 GHMARTLKAFDSWLQD 73 (151)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 3456677777778876
No 219
>cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases.They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues.
Probab=21.69 E-value=2e+02 Score=28.74 Aligned_cols=46 Identities=9% Similarity=0.134 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhhcCCCCCccceEEEecCCcCc--HHHHHHHHHhhCC
Q 041209 102 RKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRI--PKVQQLLQDFFNG 147 (412)
Q Consensus 102 ~~~~~~i~~~l~~a~~~~~~id~V~LvGGssri--P~V~~~l~~~f~~ 147 (412)
......++++|+++++++++|+.|..-|=++.. +.-.+.+++.|+.
T Consensus 274 ~~~~~a~~~Al~~Agi~~~dId~i~~hgtgt~~~D~~E~~ai~~~~~~ 321 (407)
T cd00828 274 KGIARAIRTALAKAGLSLDDLDVISAHGTSTPANDVAESRAIAEVAGA 321 (407)
T ss_pred HHHHHHHHHHHHHcCCCHHHcCEEecccccCccccHHHHHHHHHHHhc
Confidence 344567899999999999999999999988876 5666788888853
No 220
>cd06151 YjgF_YER057c_UK114_like_3 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=21.66 E-value=2.4e+02 Score=23.10 Aligned_cols=52 Identities=17% Similarity=0.331 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCccce--EEEecCCc-----CcHHHHHHHHHhhCC
Q 041209 92 RFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHD--VVLVGGST-----RIPKVQQLLQDFFNG 147 (412)
Q Consensus 92 efe~~~~~~~~~~~~~i~~~l~~a~~~~~~id~--V~LvGGss-----riP~V~~~l~~~f~~ 147 (412)
++++.+...++ -++.+|+.++.+.++|=. +++++... .++.+.+...++|+.
T Consensus 38 d~~~Q~~~~l~----ni~~~L~~aG~~~~dVvk~~vyl~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (126)
T cd06151 38 DTETQTISVLK----RIETILQSQGLTMGDVVKMRVFLVADPALDGKMDFAGFMKAYRQFFGT 96 (126)
T ss_pred CHHHHHHHHHH----HHHHHHHHcCCCHHHEEEEEEEEecCccccchhhHHHHHHHHHHHhcc
Confidence 55555554444 466778888988887755 67776443 688888889999953
No 221
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=21.48 E-value=4.3e+02 Score=21.12 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=33.7
Q ss_pred CHHhHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHh
Q 041209 325 DPADKQKIEKAIDEAIEWLDGNQLVEVDELEDKLKELKGFCNPIIAKMYE 374 (412)
Q Consensus 325 ~~~e~~~i~~~l~~~~~wl~~~~~~~~~~~~~~~~~L~~~~~~i~~r~~e 374 (412)
-..++..+...++.-.+.++. ..+.++.+.+.|+..+..+...+.+
T Consensus 61 v~~~~~e~~~~l~~r~e~ie~----~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKETLEL----RVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred heecHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777754 6777888888888888888777765
No 222
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=21.30 E-value=1.2e+02 Score=24.82 Aligned_cols=31 Identities=6% Similarity=0.187 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccceEEEe
Q 041209 98 MDLFRKCMEPVEKCLRDSKIDKSQVHDVVLV 128 (412)
Q Consensus 98 ~~~~~~~~~~i~~~l~~a~~~~~~id~V~Lv 128 (412)
+.+++.+.+++.++++..++++++|-+|+++
T Consensus 16 e~I~~at~eLl~~ii~~N~l~~edivSv~FT 46 (117)
T TIGR01796 16 EEIGEAVAELLTELMERNELTPEDLISVIFT 46 (117)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEEEEE
Confidence 3456677788889999999999998887764
No 223
>PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional
Probab=21.14 E-value=1.3e+02 Score=30.53 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhh-cCCCCCccceEEEecCCcCcH--HHHHHHHHhhCC
Q 041209 103 KCMEPVEKCLRD-SKIDKSQVHDVVLVGGSTRIP--KVQQLLQDFFNG 147 (412)
Q Consensus 103 ~~~~~i~~~l~~-a~~~~~~id~V~LvGGssriP--~V~~~l~~~f~~ 147 (412)
.....++++|++ +++++++||.|.+.|=++.+- .=.+.+.+.|++
T Consensus 284 ~~~~ai~~Al~~~Agi~~~dId~ie~hgtgt~~~D~~E~~al~~~~~~ 331 (421)
T PTZ00050 284 GARRCMENALKDGANININDVDYVNAHATSTPIGDKIELKAIKKVFGD 331 (421)
T ss_pred HHHHHHHHHHHhccCCChhhCCEEECCCccCCCCCHHHHHHHHHHhcc
Confidence 345678999999 999999999999999887554 444678888954
No 224
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=21.09 E-value=4.5e+02 Score=21.78 Aligned_cols=66 Identities=17% Similarity=0.250 Sum_probs=38.7
Q ss_pred cCCCcccHHHHHHhhcce-EEeeecccCce--eEEEEeHHHH-HHHHHHHHHHH-----HHHHHHHHhhcCCCCCcc
Q 041209 55 KKDISGNARALRRLQTTT-IEIDSLYEGID--FYATITRARF-EELNMDLFRKC-----MEPVEKCLRDSKIDKSQV 122 (412)
Q Consensus 55 ~~~~~~~~~~~~~l~~~~-i~i~~~~~~~~--~~~~itr~ef-e~~~~~~~~~~-----~~~i~~~l~~a~~~~~~i 122 (412)
++....-...+.||..-. +... ..+.. +.-.|+|+++ ...++.+++++ ..++...+....++++++
T Consensus 33 ~~~~tTv~T~L~rL~~KG~v~~~--k~gr~~~Y~p~vs~ee~~~~~~~~~~~~~f~gs~~~ll~~l~~~~~ls~eel 107 (130)
T TIGR02698 33 DWSDSTIKTLLGRLVDKGCLTTE--KEGRKFIYTALVSEDEAVENAAQELFSRICSRKVGAVIADLIEESPLSQTDI 107 (130)
T ss_pred CCcHHHHHHHHHHHHHCCceeee--cCCCcEEEEecCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCHHHH
Confidence 333344455666776622 2222 22333 3345999999 45667777754 456667777677777775
No 225
>PRK09604 UGMP family protein; Validated
Probab=20.89 E-value=1.8e+02 Score=28.47 Aligned_cols=64 Identities=9% Similarity=0.126 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHH------HhhCCCcccccCCCchhHHh
Q 041209 97 NMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQ------DFFNGKELCKSINPDEAVAY 162 (412)
Q Consensus 97 ~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~------~~f~~~~~~~~~~pd~aVA~ 162 (412)
...-.+.+...++++|+++++++.+||.|...-|-..++.+|--+. ..+ +.+ ...++--++-|.
T Consensus 48 ~~~H~~~l~~~i~~~L~~~~~~~~did~iavt~GPG~~tglrvg~~~Ak~La~~~-~ip-l~~v~h~~~ha~ 117 (332)
T PRK09604 48 SRAHVENIVPLIEEALKEAGLTLEDIDAIAVTAGPGLVGALLVGVSFAKALALAL-NKP-LIGVNHLEGHLL 117 (332)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHHhHHHHHHHHHHHHHHh-CCC-EEeecCHHHHHH
Confidence 3455677788899999999999999999999998888888765443 344 333 344455556555
No 226
>cd06154 YjgF_YER057c_UK114_like_6 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=20.85 E-value=1.8e+02 Score=23.49 Aligned_cols=52 Identities=12% Similarity=0.127 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccce--EEEecCCcCcHHHHHHHHHhhCC
Q 041209 91 ARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHD--VVLVGGSTRIPKVQQLLQDFFNG 147 (412)
Q Consensus 91 ~efe~~~~~~~~~~~~~i~~~l~~a~~~~~~id~--V~LvGGssriP~V~~~l~~~f~~ 147 (412)
.++++.++..++. +..+|+.++.+.++|-. |+++. ....+.+.+...++|++
T Consensus 40 ~d~~~Q~~~~~~n----i~~~L~~aG~~~~dVvk~~vyl~d-~~~~~~~~~~~~~~f~~ 93 (119)
T cd06154 40 GDAYEQTRQCLEI----IEAALAEAGASLEDVVRTRMYVTD-IADFEAVGRAHGEVFGD 93 (119)
T ss_pred CCHHHHHHHHHHH----HHHHHHHcCCCHHHEEEEEEEECC-HHHHHHHHHHHHHHcCC
Confidence 4566666555555 55667778888877655 45555 57788888889999954
No 227
>PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase
Probab=20.78 E-value=1.5e+02 Score=30.25 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhcCCCCCccceEEEecCCcCcHHH--HHHHHHhhCC
Q 041209 104 CMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKV--QQLLQDFFNG 147 (412)
Q Consensus 104 ~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V--~~~l~~~f~~ 147 (412)
....++++|+++++.+++||.|.+.|=++..--. .+.+.+.|++
T Consensus 301 ~~~a~~~Al~~Agi~~~dId~ve~hgtgt~~~D~~E~~ai~~~~~~ 346 (437)
T PLN02836 301 AVLAMTRALQQSGLHPNQVDYVNAHATSTPLGDAVEARAIKTVFSE 346 (437)
T ss_pred HHHHHHHHHHHcCCCHhHcCEEEccCCcCcCcCHHHHHHHHHHhcc
Confidence 4567899999999999999999999988864433 3457888854
No 228
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=20.36 E-value=2.2e+02 Score=27.44 Aligned_cols=42 Identities=14% Similarity=0.233 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCccceEEEecCCcCcHHHHHHHHHhh
Q 041209 101 FRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFF 145 (412)
Q Consensus 101 ~~~~~~~i~~~l~~a~~~~~~id~V~LvGGssriP~V~~~l~~~f 145 (412)
+..+...++++|++++++++|||.+++.-++- .+-+.+.+.+
T Consensus 225 ~~~~~~~i~~~L~~~g~~~~did~~~~hq~~~---~~~~~~~~~l 266 (326)
T CHL00203 225 VFQVPAVIIKCLNALNISIDEVDWFILHQANK---RILEAIANRL 266 (326)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEECCCCH---HHHHHHHHHh
Confidence 34567788999999999999999999988883 3445566776
No 229
>PLN02932 3-ketoacyl-CoA synthase
Probab=20.26 E-value=3e+02 Score=28.58 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEec-CCcCcHHHHHHHHHhhC
Q 041209 93 FEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVG-GSTRIPKVQQLLQDFFN 146 (412)
Q Consensus 93 fe~~~~~~~~~~~~~i~~~l~~a~~~~~~id~V~LvG-GssriP~V~~~l~~~f~ 146 (412)
++...+....=+...++++|+++++++++||.|+++- -..-.|.+.-+|.+.++
T Consensus 141 ~~~~~~ea~~la~~Aa~~aL~~agi~p~dId~lIv~tst~~~~Pslaa~V~~~lG 195 (478)
T PLN02932 141 LAVSRKETEEVIIGAVDNLFRNTGISPSDIGILVVNSSTFNPTPSLSSILVNKFK 195 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCCcHHHHHHHHhC
Confidence 3333333333345678889999999999999976543 33468999999999994
No 230
>PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=20.25 E-value=1.5e+02 Score=29.97 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhcCCCCCccceEEEecCCcCc--HHHHHHHHHhhC
Q 041209 103 KCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRI--PKVQQLLQDFFN 146 (412)
Q Consensus 103 ~~~~~i~~~l~~a~~~~~~id~V~LvGGssri--P~V~~~l~~~f~ 146 (412)
.+...++++|+++++.+++|+.|...|-+|.. +.=...|.+.|+
T Consensus 290 ~~~~ai~~AL~~agi~p~dId~i~~Hgtgt~~~d~~E~~al~~~~~ 335 (425)
T PRK06501 290 PAIGAIRAALADAGLTPEQIDYINAHGTSTPENDKMEYLGLSAVFG 335 (425)
T ss_pred HHHHHHHHHHHHcCCCHHHcCEEEecCccCcchHHHHHHHHHHHhc
Confidence 35678999999999999999999999988776 344456777784
Done!