Query 041211
Match_columns 222
No_of_seqs 131 out of 1214
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 04:52:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041211.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041211hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0406 Glutathione S-transfer 100.0 1.5E-41 3.2E-46 255.3 23.2 215 3-217 8-226 (231)
2 PRK09481 sspA stringent starva 100.0 1.3E-40 2.8E-45 255.4 21.5 196 3-204 9-204 (211)
3 PLN02473 glutathione S-transfe 100.0 5.4E-37 1.2E-41 236.0 18.4 192 5-201 3-210 (214)
4 PRK15113 glutathione S-transfe 100.0 1.3E-36 2.7E-41 233.8 19.6 193 1-204 1-210 (214)
5 PRK13972 GSH-dependent disulfi 100.0 8.9E-36 1.9E-40 229.3 18.0 186 5-201 2-204 (215)
6 PRK10542 glutathionine S-trans 100.0 5.5E-36 1.2E-40 228.2 16.3 189 5-202 1-197 (201)
7 PLN02395 glutathione S-transfe 100.0 1.6E-35 3.6E-40 227.8 18.8 194 1-202 1-210 (215)
8 COG0625 Gst Glutathione S-tran 100.0 4.9E-35 1.1E-39 224.6 19.0 185 5-197 1-199 (211)
9 TIGR01262 maiA maleylacetoacet 100.0 3.9E-35 8.5E-40 225.0 18.4 190 6-203 1-205 (210)
10 PRK10357 putative glutathione 100.0 1.1E-34 2.4E-39 221.2 20.0 192 5-202 1-200 (202)
11 TIGR00862 O-ClC intracellular 100.0 6.9E-34 1.5E-38 219.0 22.1 197 10-217 16-235 (236)
12 KOG0868 Glutathione S-transfer 100.0 7E-35 1.5E-39 206.7 13.9 195 2-204 3-209 (217)
13 PRK11752 putative S-transferas 100.0 1.2E-33 2.7E-38 223.1 18.9 196 4-203 44-259 (264)
14 PLN02378 glutathione S-transfe 100.0 1E-32 2.2E-37 211.8 20.5 187 9-208 16-205 (213)
15 PTZ00057 glutathione s-transfe 100.0 3.6E-33 7.8E-38 213.2 16.9 191 1-204 1-201 (205)
16 PLN02817 glutathione dehydroge 100.0 1.6E-32 3.5E-37 215.8 20.8 190 10-212 70-261 (265)
17 KOG0867 Glutathione S-transfer 100.0 1.7E-31 3.6E-36 206.0 18.7 196 4-204 2-211 (226)
18 PRK10387 glutaredoxin 2; Provi 100.0 1.8E-31 3.8E-36 204.7 16.6 178 5-196 1-207 (210)
19 TIGR02182 GRXB Glutaredoxin, G 100.0 6.6E-29 1.4E-33 190.1 17.0 176 6-196 1-206 (209)
20 KOG1695 Glutathione S-transfer 100.0 1.5E-28 3.2E-33 184.0 16.4 194 1-204 1-202 (206)
21 KOG4420 Uncharacterized conser 99.9 3E-27 6.6E-32 177.3 12.7 202 4-208 26-293 (325)
22 PLN02907 glutamate-tRNA ligase 99.9 1.1E-23 2.4E-28 184.5 16.9 158 1-195 1-159 (722)
23 KOG1422 Intracellular Cl- chan 99.9 8.2E-23 1.8E-27 149.4 16.3 194 11-214 19-217 (221)
24 PF13417 GST_N_3: Glutathione 99.9 3.9E-21 8.6E-26 123.1 8.2 74 7-81 1-74 (75)
25 cd03059 GST_N_SspA GST_N famil 99.8 3.9E-20 8.6E-25 117.9 9.1 73 5-78 1-73 (73)
26 cd03052 GST_N_GDAP1 GST_N fami 99.8 3.7E-20 8.1E-25 117.7 8.0 70 5-75 1-73 (73)
27 cd03058 GST_N_Tau GST_N family 99.8 7.4E-20 1.6E-24 117.0 9.0 74 5-78 1-74 (74)
28 KOG4244 Failed axon connection 99.8 3.3E-19 7.2E-24 135.0 13.9 177 5-193 46-273 (281)
29 cd03041 GST_N_2GST_N GST_N fam 99.8 9.1E-20 2E-24 117.4 8.3 74 4-78 1-77 (77)
30 cd03061 GST_N_CLIC GST_N famil 99.8 1.3E-19 2.8E-24 118.6 8.3 69 11-80 20-88 (91)
31 cd03076 GST_N_Pi GST_N family, 99.8 1.8E-19 3.8E-24 114.8 7.4 72 4-76 1-72 (73)
32 cd03045 GST_N_Delta_Epsilon GS 99.8 3.6E-19 7.7E-24 113.8 8.5 71 5-76 1-74 (74)
33 cd03060 GST_N_Omega_like GST_N 99.8 4.1E-19 8.9E-24 112.5 8.4 69 5-74 1-70 (71)
34 cd03053 GST_N_Phi GST_N family 99.8 5.1E-19 1.1E-23 113.6 8.9 72 5-77 2-76 (76)
35 cd03050 GST_N_Theta GST_N fami 99.8 9.4E-19 2E-23 112.4 9.0 73 5-78 1-76 (76)
36 cd03048 GST_N_Ure2p_like GST_N 99.8 1.2E-18 2.6E-23 113.3 9.0 74 4-79 1-80 (81)
37 cd03185 GST_C_Tau GST_C family 99.8 3.9E-18 8.5E-23 120.2 12.0 124 89-212 2-125 (126)
38 cd03055 GST_N_Omega GST_N fami 99.8 1.6E-18 3.4E-23 114.7 8.8 72 3-75 17-89 (89)
39 cd03056 GST_N_4 GST_N family, 99.8 2E-18 4.2E-23 110.0 8.1 70 5-75 1-73 (73)
40 cd03047 GST_N_2 GST_N family, 99.8 2E-18 4.4E-23 109.9 8.1 70 5-75 1-73 (73)
41 cd03039 GST_N_Sigma_like GST_N 99.8 1.7E-18 3.6E-23 110.1 7.3 71 5-76 1-72 (72)
42 cd03044 GST_N_EF1Bgamma GST_N 99.8 2.5E-18 5.5E-23 110.1 8.0 70 6-76 2-74 (75)
43 cd03049 GST_N_3 GST_N family, 99.8 2.4E-18 5.3E-23 109.6 7.7 70 5-75 1-73 (73)
44 KOG3029 Glutathione S-transfer 99.8 3.1E-17 6.7E-22 125.1 14.4 181 4-192 90-354 (370)
45 cd03046 GST_N_GTT1_like GST_N 99.8 5.1E-18 1.1E-22 108.9 8.7 73 5-79 1-76 (76)
46 cd03037 GST_N_GRX2 GST_N famil 99.8 4E-18 8.6E-23 108.0 7.8 70 5-76 1-71 (71)
47 cd03051 GST_N_GTT2_like GST_N 99.8 4.5E-18 9.7E-23 108.6 7.5 70 5-75 1-74 (74)
48 cd03057 GST_N_Beta GST_N famil 99.7 9.5E-18 2.1E-22 108.0 8.5 73 5-79 1-77 (77)
49 cd03042 GST_N_Zeta GST_N famil 99.7 7.5E-18 1.6E-22 107.3 7.9 70 5-75 1-73 (73)
50 cd03040 GST_N_mPGES2 GST_N fam 99.7 1.1E-17 2.5E-22 107.6 7.8 72 4-78 1-76 (77)
51 cd03077 GST_N_Alpha GST_N fami 99.7 3.4E-17 7.3E-22 105.8 8.8 72 4-79 1-77 (79)
52 cd03075 GST_N_Mu GST_N family, 99.7 2.8E-17 6.1E-22 106.8 8.3 73 5-78 1-82 (82)
53 cd03080 GST_N_Metaxin_like GST 99.7 4E-17 8.7E-22 104.5 8.4 67 5-79 2-75 (75)
54 cd03190 GST_C_ECM4_like GST_C 99.7 1.1E-16 2.4E-21 115.1 10.9 125 89-215 3-131 (142)
55 PF13409 GST_N_2: Glutathione 99.7 3.2E-17 7E-22 103.4 7.0 65 12-77 1-70 (70)
56 cd03186 GST_C_SspA GST_N famil 99.7 1.7E-16 3.6E-21 108.7 10.5 105 89-199 2-106 (107)
57 cd03196 GST_C_5 GST_C family, 99.7 2.2E-16 4.8E-21 109.4 10.5 109 87-199 3-114 (115)
58 cd03184 GST_C_Omega GST_C fami 99.7 3E-16 6.4E-21 110.4 10.5 119 90-211 2-122 (124)
59 PF02798 GST_N: Glutathione S- 99.7 1.2E-16 2.6E-21 102.4 7.6 72 5-76 1-76 (76)
60 cd03038 GST_N_etherase_LigE GS 99.7 1.5E-16 3.2E-21 104.1 7.8 67 11-79 14-84 (84)
61 COG0435 ECM4 Predicted glutath 99.7 7.4E-16 1.6E-20 117.4 12.0 205 3-210 50-293 (324)
62 cd03043 GST_N_1 GST_N family, 99.7 3.8E-16 8.2E-21 99.3 7.7 66 9-75 6-73 (73)
63 cd03188 GST_C_Beta GST_C famil 99.7 8.5E-16 1.8E-20 106.2 9.4 104 90-200 2-114 (114)
64 COG2999 GrxB Glutaredoxin 2 [P 99.7 5E-15 1.1E-19 105.8 12.9 179 5-197 1-208 (215)
65 cd00570 GST_N_family Glutathio 99.7 8.3E-16 1.8E-20 96.6 8.2 70 5-75 1-71 (71)
66 cd03198 GST_C_CLIC GST_C famil 99.6 3.5E-15 7.6E-20 105.0 10.0 109 101-211 7-133 (134)
67 KOG2903 Predicted glutathione 99.6 4.7E-15 1E-19 112.1 10.6 206 3-212 36-297 (319)
68 cd03191 GST_C_Zeta GST_C famil 99.6 3.6E-15 7.8E-20 104.3 8.9 108 89-203 2-120 (121)
69 cd03054 GST_N_Metaxin GST_N fa 99.6 4.6E-15 1E-19 94.1 8.0 65 5-77 1-72 (72)
70 cd03182 GST_C_GTT2_like GST_C 99.6 1.9E-14 4.2E-19 100.0 11.4 104 87-196 1-117 (117)
71 cd03189 GST_C_GTT1_like GST_C 99.6 1.5E-14 3.3E-19 100.8 10.4 103 85-194 2-119 (119)
72 cd03203 GST_C_Lambda GST_C fam 99.6 1.5E-14 3.3E-19 101.0 10.3 115 87-210 1-119 (120)
73 cd03177 GST_C_Delta_Epsilon GS 99.6 1E-14 2.2E-19 101.6 8.7 105 90-200 2-110 (118)
74 cd03187 GST_C_Phi GST_C family 99.6 1.4E-14 3.1E-19 100.7 8.7 106 90-200 2-118 (118)
75 cd03178 GST_C_Ure2p_like GST_C 99.6 8E-15 1.7E-19 101.2 7.1 105 90-200 1-112 (113)
76 cd03201 GST_C_DHAR GST_C famil 99.6 3.4E-14 7.5E-19 99.2 10.3 104 104-210 13-118 (121)
77 cd03209 GST_C_Mu GST_C family, 99.6 3.1E-14 6.8E-19 99.6 9.4 109 90-205 2-112 (121)
78 cd03180 GST_C_2 GST_C family, 99.5 9.1E-14 2E-18 95.4 10.2 100 90-196 2-110 (110)
79 cd03181 GST_C_EFB1gamma GST_C 99.5 3.5E-14 7.6E-19 99.5 8.0 111 90-204 1-118 (123)
80 cd03210 GST_C_Pi GST_C family, 99.5 6.3E-14 1.4E-18 98.7 8.8 108 90-204 3-114 (126)
81 cd03200 GST_C_JTV1 GST_C famil 99.5 1.8E-13 4E-18 91.6 9.7 95 71-192 1-95 (96)
82 cd03208 GST_C_Alpha GST_C fami 99.5 1.5E-13 3.2E-18 98.2 9.5 108 90-204 3-117 (137)
83 cd03195 GST_C_4 GST_C family, 99.5 1.7E-13 3.8E-18 94.7 9.1 103 89-201 2-112 (114)
84 cd03183 GST_C_Theta GST_C fami 99.5 9.2E-14 2E-18 97.9 7.7 104 91-200 2-120 (126)
85 cd03207 GST_C_8 GST_C family, 99.5 3.8E-14 8.2E-19 96.3 5.3 97 97-201 4-101 (103)
86 cd03206 GST_C_7 GST_C family, 99.4 7.2E-13 1.6E-17 89.5 7.4 71 119-196 30-100 (100)
87 PF00043 GST_C: Glutathione S- 99.4 9.1E-13 2E-17 88.0 7.8 71 119-194 25-95 (95)
88 cd03079 GST_N_Metaxin2 GST_N f 99.4 1.5E-12 3.2E-17 81.9 7.2 60 11-77 15-74 (74)
89 cd03179 GST_C_1 GST_C family, 99.4 2.1E-12 4.5E-17 87.8 7.7 95 90-191 2-105 (105)
90 cd03204 GST_C_GDAP1 GST_C fami 99.4 4.3E-12 9.3E-17 86.6 7.8 76 117-196 24-111 (111)
91 PF13410 GST_C_2: Glutathione 99.3 4E-12 8.6E-17 79.8 7.0 67 119-189 3-69 (69)
92 TIGR02190 GlrX-dom Glutaredoxi 99.3 1E-11 2.3E-16 80.0 7.6 72 3-75 8-79 (79)
93 PRK10638 glutaredoxin 3; Provi 99.3 2.2E-11 4.8E-16 79.3 8.2 73 1-75 1-74 (83)
94 KOG3028 Translocase of outer m 99.3 3.8E-10 8.3E-15 88.2 16.0 170 12-192 16-233 (313)
95 cd03194 GST_C_3 GST_C family, 99.3 3.3E-11 7.1E-16 83.3 8.7 72 120-201 39-113 (114)
96 KOG3027 Mitochondrial outer me 99.3 2.7E-10 5.9E-15 83.6 13.7 171 12-193 33-248 (257)
97 cd00299 GST_C_family Glutathio 99.3 2.4E-11 5.1E-16 81.5 7.4 92 95-190 2-100 (100)
98 PF14497 GST_C_3: Glutathione 99.2 1.6E-11 3.4E-16 82.7 5.9 92 88-192 3-99 (99)
99 cd03192 GST_C_Sigma_like GST_C 99.2 7.3E-11 1.6E-15 80.1 8.0 95 90-190 2-104 (104)
100 cd03029 GRX_hybridPRX5 Glutare 99.2 1.7E-10 3.7E-15 72.9 8.1 71 4-75 2-72 (72)
101 cd03202 GST_C_etherase_LigE GS 99.2 1.2E-10 2.7E-15 81.7 7.7 68 120-192 56-123 (124)
102 cd03193 GST_C_Metaxin GST_C fa 99.2 8E-11 1.7E-15 77.5 6.0 68 122-191 19-88 (88)
103 cd03078 GST_N_Metaxin1_like GS 99.1 6.2E-10 1.3E-14 70.4 7.9 59 11-77 14-72 (73)
104 cd03027 GRX_DEP Glutaredoxin ( 99.0 1.7E-09 3.6E-14 68.5 7.0 68 4-72 2-70 (73)
105 cd03211 GST_C_Metaxin2 GST_C f 98.9 2.3E-09 5.1E-14 75.3 5.6 72 119-191 54-126 (126)
106 PRK10329 glutaredoxin-like pro 98.9 5.7E-09 1.2E-13 67.3 6.7 62 4-66 2-63 (81)
107 cd02066 GRX_family Glutaredoxi 98.9 8.8E-09 1.9E-13 64.6 7.3 69 4-73 1-70 (72)
108 cd02976 NrdH NrdH-redoxin (Nrd 98.9 9.1E-09 2E-13 64.8 6.5 63 4-67 1-64 (73)
109 TIGR02196 GlrX_YruB Glutaredox 98.9 1E-08 2.2E-13 64.6 6.7 70 4-74 1-73 (74)
110 cd03205 GST_C_6 GST_C family, 98.9 1.7E-08 3.6E-13 67.7 7.8 66 118-190 33-98 (98)
111 PF14834 GST_C_4: Glutathione 98.8 3.7E-08 8E-13 66.1 9.0 104 87-200 1-112 (117)
112 cd03212 GST_C_Metaxin1_3 GST_C 98.8 1.6E-08 3.4E-13 72.1 7.2 73 119-192 61-134 (137)
113 cd03418 GRX_GRXb_1_3_like Glut 98.8 3.2E-08 7E-13 62.9 7.5 72 4-75 1-73 (75)
114 cd03197 GST_C_mPGES2 GST_C fam 98.8 3.4E-08 7.5E-13 70.4 8.2 64 123-192 80-145 (149)
115 COG0695 GrxC Glutaredoxin and 98.7 7.9E-08 1.7E-12 61.8 7.8 69 4-73 2-73 (80)
116 TIGR02181 GRX_bact Glutaredoxi 98.7 9.5E-08 2.1E-12 61.4 7.1 71 5-76 1-72 (79)
117 TIGR02194 GlrX_NrdH Glutaredox 98.7 6.8E-08 1.5E-12 60.9 6.1 57 5-62 1-57 (72)
118 TIGR02200 GlrX_actino Glutared 98.6 1.5E-07 3.3E-12 59.9 7.0 70 4-74 1-75 (77)
119 PRK11200 grxA glutaredoxin 1; 98.6 2.3E-07 5E-12 60.5 7.6 75 4-79 2-84 (85)
120 PF00462 Glutaredoxin: Glutare 98.6 5.3E-08 1.2E-12 59.1 4.0 59 5-64 1-60 (60)
121 TIGR02189 GlrX-like_plant Glut 98.6 5.3E-07 1.2E-11 60.5 8.9 70 3-73 8-81 (99)
122 PHA03050 glutaredoxin; Provisi 98.6 7E-07 1.5E-11 60.8 8.6 69 3-72 13-88 (108)
123 cd03419 GRX_GRXh_1_2_like Glut 98.5 8.2E-07 1.8E-11 57.3 8.2 72 4-76 1-76 (82)
124 TIGR02183 GRXA Glutaredoxin, G 98.5 6.6E-07 1.4E-11 58.5 7.6 74 5-79 2-83 (86)
125 TIGR00365 monothiol glutaredox 98.4 2.9E-06 6.3E-11 56.7 7.7 71 3-74 12-88 (97)
126 cd03028 GRX_PICOT_like Glutare 98.3 4.9E-06 1.1E-10 54.8 7.7 71 3-74 8-84 (90)
127 TIGR02180 GRX_euk Glutaredoxin 98.3 6.5E-06 1.4E-10 53.2 8.2 71 5-76 1-77 (84)
128 PF10568 Tom37: Outer mitochon 98.0 5.3E-05 1.1E-09 47.5 6.8 57 11-75 12-72 (72)
129 PRK12759 bifunctional gluaredo 98.0 4.1E-05 8.8E-10 64.5 8.2 70 1-72 1-79 (410)
130 cd03031 GRX_GRX_like Glutaredo 97.9 6.8E-05 1.5E-09 53.8 7.7 70 4-74 1-81 (147)
131 PRK10824 glutaredoxin-4; Provi 97.8 0.00012 2.6E-09 50.2 7.4 71 3-74 15-91 (115)
132 KOG1752 Glutaredoxin and relat 97.7 0.00047 1E-08 46.4 8.8 71 3-74 14-88 (104)
133 COG4545 Glutaredoxin-related p 97.5 0.00039 8.4E-09 42.9 5.6 63 1-65 1-77 (85)
134 PF04399 Glutaredoxin2_C: Glut 97.5 0.00071 1.5E-08 47.5 7.1 68 120-196 57-124 (132)
135 PTZ00062 glutaredoxin; Provisi 97.4 0.00076 1.6E-08 51.2 7.5 70 3-73 113-188 (204)
136 KOG1147 Glutamyl-tRNA syntheta 97.4 0.00027 5.9E-09 59.8 5.0 122 55-199 39-161 (712)
137 cd03036 ArsC_like Arsenate Red 97.3 0.00041 8.8E-09 47.5 4.0 34 5-38 1-34 (111)
138 cd02973 TRX_GRX_like Thioredox 97.2 0.0015 3.2E-08 40.1 5.9 58 4-65 2-64 (67)
139 cd02977 ArsC_family Arsenate R 97.2 0.00059 1.3E-08 46.2 4.1 33 5-37 1-33 (105)
140 PRK01655 spxA transcriptional 97.2 0.00071 1.5E-08 47.7 4.5 33 5-37 2-34 (131)
141 cd03199 GST_C_GRX2 GST_C famil 97.1 0.0035 7.7E-08 43.7 7.3 68 120-196 58-125 (128)
142 cd03032 ArsC_Spx Arsenate Redu 97.1 0.00095 2.1E-08 46.0 4.5 33 5-37 2-34 (115)
143 PRK10026 arsenate reductase; P 97.0 0.0011 2.3E-08 47.2 4.4 35 1-36 1-35 (141)
144 PRK13344 spxA transcriptional 96.9 0.003 6.4E-08 44.6 5.5 34 5-38 2-35 (132)
145 TIGR01617 arsC_related transcr 96.9 0.0017 3.6E-08 44.9 4.1 33 5-37 1-33 (117)
146 PRK12559 transcriptional regul 96.9 0.0028 6.1E-08 44.7 5.3 34 5-38 2-35 (131)
147 cd03035 ArsC_Yffb Arsenate Red 96.7 0.0045 9.8E-08 41.9 5.1 33 5-37 1-33 (105)
148 cd03033 ArsC_15kD Arsenate Red 96.6 0.0035 7.5E-08 43.0 4.2 34 4-37 1-34 (113)
149 cd03030 GRX_SH3BGR Glutaredoxi 96.6 0.018 3.9E-07 37.9 7.4 67 5-72 2-79 (92)
150 TIGR00412 redox_disulf_2 small 96.4 0.022 4.7E-07 36.0 6.8 55 5-65 3-61 (76)
151 COG1393 ArsC Arsenate reductas 96.4 0.011 2.3E-07 40.8 5.4 33 4-36 2-34 (117)
152 TIGR01616 nitro_assoc nitrogen 96.3 0.0075 1.6E-07 42.2 4.4 33 4-36 2-34 (126)
153 PF05768 DUF836: Glutaredoxin- 96.2 0.032 7E-07 35.7 6.7 55 4-61 1-57 (81)
154 PRK10853 putative reductase; P 96.1 0.0091 2E-07 41.3 4.1 32 5-36 2-33 (118)
155 COG0278 Glutaredoxin-related p 95.9 0.049 1.1E-06 35.9 6.4 72 3-75 15-93 (105)
156 cd03034 ArsC_ArsC Arsenate Red 95.7 0.017 3.8E-07 39.5 4.0 32 5-36 1-32 (112)
157 TIGR00014 arsC arsenate reduct 95.7 0.019 4E-07 39.5 4.0 32 5-36 1-32 (114)
158 TIGR00411 redox_disulf_1 small 95.2 0.097 2.1E-06 33.1 6.1 57 4-62 2-62 (82)
159 PF04908 SH3BGR: SH3-binding, 95.0 0.16 3.5E-06 33.8 6.8 71 1-74 1-87 (99)
160 cd01659 TRX_superfamily Thiore 95.0 0.067 1.4E-06 31.2 4.6 54 5-59 1-59 (69)
161 PHA02125 thioredoxin-like prot 94.6 0.19 4.1E-06 31.5 6.0 53 5-62 2-54 (75)
162 PF11287 DUF3088: Protein of u 93.6 0.27 5.9E-06 33.2 5.4 68 12-79 23-108 (112)
163 cd03026 AhpF_NTD_C TRX-GRX-lik 93.3 0.19 4.1E-06 32.8 4.4 58 4-65 15-77 (89)
164 PF13192 Thioredoxin_3: Thiore 92.6 0.67 1.4E-05 29.1 6.0 57 5-67 3-63 (76)
165 KOG0911 Glutaredoxin-related p 91.8 0.65 1.4E-05 35.5 6.0 72 3-75 139-216 (227)
166 PF11801 Tom37_C: Tom37 C-term 91.7 0.39 8.4E-06 35.4 4.7 38 126-163 112-153 (168)
167 PF03960 ArsC: ArsC family; I 90.9 0.32 7E-06 33.0 3.4 29 8-36 1-29 (110)
168 KOG1668 Elongation factor 1 be 82.6 1.1 2.4E-05 34.4 2.4 59 128-197 10-68 (231)
169 TIGR01295 PedC_BrcD bacterioci 78.8 13 0.00029 25.6 6.7 32 5-36 27-62 (122)
170 PF09635 MetRS-N: MetRS-N bind 77.3 1.9 4.2E-05 29.7 2.0 27 53-79 35-63 (122)
171 TIGR03143 AhpF_homolog putativ 76.9 8.3 0.00018 34.2 6.4 58 4-66 479-542 (555)
172 PRK15317 alkyl hydroperoxide r 76.5 2.8 6E-05 36.7 3.3 71 4-76 119-196 (517)
173 TIGR03140 AhpF alkyl hydropero 75.9 4.9 0.00011 35.2 4.6 71 4-76 120-197 (515)
174 PF00085 Thioredoxin: Thioredo 72.1 23 0.0005 22.7 8.3 70 5-76 21-102 (103)
175 COG3019 Predicted metal-bindin 69.5 22 0.00048 25.2 5.7 75 4-78 27-104 (149)
176 PF11417 Inhibitor_G39P: Loade 67.7 15 0.00033 22.8 4.2 36 66-103 5-42 (71)
177 cd02949 TRX_NTR TRX domain, no 67.5 31 0.00066 22.3 6.4 57 5-64 17-80 (97)
178 TIGR02187 GlrX_arch Glutaredox 66.4 24 0.00053 26.9 6.1 55 4-60 136-193 (215)
179 KOG2824 Glutaredoxin-related p 63.5 13 0.00028 29.6 4.0 69 4-73 132-211 (281)
180 cd02953 DsbDgamma DsbD gamma f 61.3 29 0.00063 22.7 5.1 52 5-58 15-77 (104)
181 cd02947 TRX_family TRX family; 60.9 36 0.00078 20.9 7.1 54 5-62 14-74 (93)
182 PHA03075 glutaredoxin-like pro 59.7 16 0.00035 25.0 3.4 68 1-76 1-68 (123)
183 cd02975 PfPDO_like_N Pyrococcu 58.3 24 0.00052 23.8 4.3 53 5-59 25-81 (113)
184 cd02984 TRX_PICOT TRX domain, 57.1 48 0.001 21.1 6.8 58 5-64 18-81 (97)
185 KOG3425 Uncharacterized conser 50.3 52 0.0011 22.8 4.7 67 10-76 42-121 (128)
186 cd02989 Phd_like_TxnDC9 Phosdu 49.9 77 0.0017 21.3 7.2 59 6-66 27-90 (113)
187 cd02951 SoxW SoxW family; SoxW 48.4 81 0.0018 21.3 5.8 16 5-20 18-33 (125)
188 PF09413 DUF2007: Domain of un 45.0 27 0.00059 20.9 2.6 33 5-37 1-33 (67)
189 PF01323 DSBA: DSBA-like thior 43.0 36 0.00078 25.0 3.6 36 4-39 1-41 (193)
190 TIGR02187 GlrX_arch Glutaredox 42.6 1E+02 0.0023 23.4 6.1 57 5-63 23-89 (215)
191 cd02959 ERp19 Endoplasmic reti 42.2 1.1E+02 0.0023 20.8 6.1 60 6-66 24-92 (117)
192 PF13728 TraF: F plasmid trans 41.3 1E+02 0.0022 23.7 5.8 52 5-58 124-188 (215)
193 PRK09381 trxA thioredoxin; Pro 40.2 1.1E+02 0.0023 20.1 7.1 57 6-64 26-88 (109)
194 TIGR02681 phage_pRha phage reg 40.0 38 0.00083 22.9 2.9 26 54-79 2-28 (108)
195 PF06110 DUF953: Eukaryotic pr 39.2 37 0.00079 23.5 2.8 58 10-68 35-106 (119)
196 cd02963 TRX_DnaJ TRX domain, D 39.0 1.2E+02 0.0025 20.2 7.8 57 5-63 28-91 (111)
197 cd04911 ACT_AKiii-YclM-BS_1 AC 38.5 39 0.00084 21.3 2.6 25 12-36 14-38 (76)
198 TIGR01764 excise DNA binding d 37.7 63 0.0014 17.3 3.3 25 52-76 25-49 (49)
199 PRK15371 effector protein YopJ 37.2 1.2E+02 0.0025 24.6 5.6 66 122-192 23-88 (287)
200 cd03021 DsbA_GSTK DsbA family, 36.9 58 0.0013 24.6 3.9 35 3-37 1-39 (209)
201 PTZ00051 thioredoxin; Provisio 36.8 1.1E+02 0.0024 19.4 6.5 58 5-64 22-84 (98)
202 KOG2501 Thioredoxin, nucleored 36.5 1.5E+02 0.0032 21.7 5.6 35 5-39 36-78 (157)
203 PF09868 DUF2095: Uncharacteri 36.2 18 0.00039 24.7 0.8 64 16-79 25-92 (128)
204 PF04564 U-box: U-box domain; 35.4 1.1E+02 0.0023 18.8 5.1 25 53-78 15-39 (73)
205 cd02957 Phd_like Phosducin (Ph 35.1 1.4E+02 0.003 19.9 5.3 59 6-67 29-92 (113)
206 PF13098 Thioredoxin_2: Thiore 35.0 47 0.001 21.9 2.9 20 5-24 9-28 (112)
207 PRK03731 aroL shikimate kinase 34.0 60 0.0013 23.4 3.5 32 1-32 1-32 (171)
208 PF04134 DUF393: Protein of un 32.6 1.5E+02 0.0033 19.6 5.4 69 7-77 1-77 (114)
209 PRK09266 hypothetical protein; 32.2 80 0.0017 24.9 4.1 56 22-78 200-258 (266)
210 PRK13947 shikimate kinase; Pro 32.0 66 0.0014 23.1 3.4 32 1-33 1-32 (171)
211 cd03020 DsbA_DsbC_DsbG DsbA fa 31.4 61 0.0013 24.2 3.2 22 4-25 80-101 (197)
212 cd02978 KaiB_like KaiB-like fa 31.0 1.2E+02 0.0025 18.9 3.8 53 4-58 3-60 (72)
213 KOG0190 Protein disulfide isom 30.7 2.2E+02 0.0048 25.0 6.6 72 6-79 47-133 (493)
214 cd02993 PDI_a_APS_reductase PD 30.4 1.6E+02 0.0035 19.3 5.7 53 5-58 25-83 (109)
215 TIGR01068 thioredoxin thioredo 30.2 1.4E+02 0.0031 18.7 8.3 55 6-62 19-79 (101)
216 PRK13949 shikimate kinase; Pro 29.8 77 0.0017 23.1 3.4 32 1-33 1-32 (169)
217 PRK10996 thioredoxin 2; Provis 29.8 2E+02 0.0043 20.1 8.9 58 5-64 56-119 (139)
218 PF00731 AIRC: AIR carboxylase 29.0 1E+02 0.0022 22.2 3.8 28 11-38 11-38 (150)
219 cd02987 Phd_like_Phd Phosducin 28.4 2.4E+02 0.0053 20.7 7.1 56 8-66 90-150 (175)
220 cd02972 DsbA_family DsbA famil 27.2 77 0.0017 19.6 2.8 22 5-26 1-22 (98)
221 PHA02278 thioredoxin-like prot 26.9 1.9E+02 0.0042 19.1 7.1 56 8-65 21-86 (103)
222 PF10022 DUF2264: Uncharacteri 26.8 1.8E+02 0.0038 24.5 5.4 107 54-163 98-213 (361)
223 PF12728 HTH_17: Helix-turn-he 26.3 1.2E+02 0.0027 16.7 3.5 26 52-77 25-50 (51)
224 PHA00159 endonuclease I 25.9 2.5E+02 0.0054 20.0 5.2 71 5-80 9-87 (148)
225 PTZ00102 disulphide isomerase; 25.7 4.3E+02 0.0092 22.7 7.8 73 5-79 53-139 (477)
226 PF15608 PELOTA_1: PELOTA RNA 25.0 1.5E+02 0.0033 19.8 3.8 29 6-34 59-87 (100)
227 cd02956 ybbN ybbN protein fami 24.7 1.9E+02 0.0041 18.2 6.8 56 6-63 17-78 (96)
228 COG5515 Uncharacterized conser 24.6 71 0.0015 19.1 1.9 22 4-25 2-27 (70)
229 PF11823 DUF3343: Protein of u 24.6 1.7E+02 0.0038 17.8 4.1 31 7-37 5-35 (73)
230 PRK10877 protein disulfide iso 24.5 84 0.0018 24.4 2.9 23 4-26 110-132 (232)
231 cd03003 PDI_a_ERdj5_N PDIa fam 24.5 2E+02 0.0043 18.4 5.6 55 5-62 22-83 (101)
232 COG0703 AroK Shikimate kinase 24.3 1.3E+02 0.0028 22.3 3.7 33 2-34 2-34 (172)
233 COG3118 Thioredoxin domain-con 23.9 4.1E+02 0.0088 21.8 7.5 73 5-79 47-131 (304)
234 PF12290 DUF3802: Protein of u 23.8 87 0.0019 21.3 2.4 85 68-158 9-97 (113)
235 COG5460 Uncharacterized conser 23.6 2E+02 0.0044 18.1 4.7 34 69-109 17-50 (82)
236 PF03421 YopJ: YopJ Serine/Thr 23.1 2.3E+02 0.005 21.0 4.9 63 125-192 2-64 (177)
237 cd02962 TMX2 TMX2 family; comp 23.0 2.9E+02 0.0064 19.8 6.8 60 5-65 51-122 (152)
238 PRK14476 nitrogenase molybdenu 22.8 2.8E+02 0.0062 24.0 6.1 72 68-146 246-317 (455)
239 PF10673 DUF2487: Protein of u 22.7 97 0.0021 22.2 2.7 45 99-143 9-53 (142)
240 cd02996 PDI_a_ERp44 PDIa famil 22.4 2.2E+02 0.0048 18.5 4.4 56 5-62 22-89 (108)
241 COG0429 Predicted hydrolase of 22.1 1.9E+02 0.0042 24.0 4.6 69 6-84 80-151 (345)
242 cd02994 PDI_a_TMX PDIa family, 22.1 2.2E+02 0.0048 18.1 5.5 53 5-59 20-77 (101)
243 COG5494 Predicted thioredoxin/ 22.0 3.4E+02 0.0073 21.0 5.5 71 4-76 12-86 (265)
244 PF09314 DUF1972: Domain of un 21.5 91 0.002 23.4 2.5 20 60-79 154-173 (185)
245 PRK11657 dsbG disulfide isomer 21.3 1E+02 0.0022 24.3 2.8 20 5-24 121-140 (251)
246 PRK14531 adenylate kinase; Pro 21.1 1.4E+02 0.003 22.0 3.4 30 1-30 1-30 (183)
247 cd01965 Nitrogenase_MoFe_beta_ 21.0 5.3E+02 0.011 22.0 11.1 129 5-146 158-305 (428)
248 PF05663 DUF809: Protein of un 20.9 26 0.00057 23.0 -0.4 27 9-35 42-68 (138)
249 TIGR01285 nifN nitrogenase mol 20.8 3.3E+02 0.0072 23.4 6.1 72 68-146 246-317 (432)
250 PRK08118 topology modulation p 20.8 1.5E+02 0.0032 21.6 3.5 31 1-32 1-31 (167)
251 PRK06217 hypothetical protein; 20.7 1.3E+02 0.0028 22.1 3.2 29 1-30 1-29 (183)
252 COG4365 Uncharacterized protei 20.5 3.7E+02 0.0079 23.2 5.9 58 145-212 203-260 (537)
253 COG3526 Uncharacterized protei 20.2 1.6E+02 0.0034 18.9 2.9 52 3-66 6-61 (99)
254 PF11732 Thoc2: Transcription- 20.0 1.8E+02 0.0038 18.4 3.2 35 152-191 42-76 (77)
No 1
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-41 Score=255.32 Aligned_cols=215 Identities=51% Similarity=0.858 Sum_probs=190.6
Q ss_pred CceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHhhcC-CC
Q 041211 3 EEVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDETWK-NN 81 (222)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~~~-~~ 81 (222)
..++||++..|||++|++++|+++||+|+.+.+++.+++++|++.||-+++||+|++||..|+||..|++||++.++ +.
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~~ 87 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSGP 87 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCCC
Confidence 45999999999999999999999999999999999999999999997679999999999999999999999999999 58
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhc-CCchhHHHHHHHHHHHHHHHHHhcC-CCccccCCCCCHHHHHHHHH
Q 041211 82 PILPQDPYQRAMVRFWAKFIDEKILATGWKANF-GEGKEREVAIEEFAEQMKFLENELN-GKDFFEGETIGFLDIVANLI 159 (222)
Q Consensus 82 ~l~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~l~~le~~L~-~~~~l~G~~~t~aD~~l~~~ 159 (222)
+++|.|+.+||+++.|+.+++..++........ ..++..+...+.+.+.|..||+.|. +++|++|++++++|+++++.
T Consensus 88 ~iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k~k~~fgG~~~G~vDi~~~p~ 167 (231)
T KOG0406|consen 88 PILPSDPYERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELGKGKDFFGGETIGFVDIAIGPS 167 (231)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCHhhhhHHhh
Confidence 999999999999999999999877766555555 3457778889999999999999998 88999999999999999976
Q ss_pred HhhhH-hhhhhhCcCCCCcccchhHHHHHHHHHhcccccccCCChhhHHHHHHHHHHhh
Q 041211 160 AFWFP-VRQDALGIEAFTQEKFPVLFKWIANITKIDLVNECRPPREKHLAFVKARIEGL 217 (222)
Q Consensus 160 l~~~~-~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 217 (222)
+..+. ......+.+.+..+++|+|.+|.+||.+++++++++++.+.+.++++.+++..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~~e~~~e~~~~~~~~~ 226 (231)
T KOG0406|consen 168 FERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPDSEKVVEFMKKYRQGS 226 (231)
T ss_pred HHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCCHHHHHHHHHHHHHhc
Confidence 65553 33333334555568999999999999999999999999999999999998753
No 2
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=1.3e-40 Score=255.45 Aligned_cols=196 Identities=23% Similarity=0.359 Sum_probs=167.8
Q ss_pred CceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHhhcCCCC
Q 041211 3 EEVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDETWKNNP 82 (222)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~ 82 (222)
++||||+++.||+|++|+++|+++|++|+.+.++..+++++|+++||. |+||+|+++|.+|+||.||++||++++++..
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~-g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~ 87 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPY-QSVPTLVDRELTLYESRIIMEYLDERFPHPP 87 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCC-CCCCEEEECCEEeeCHHHHHHHHHHhCCCCC
Confidence 469999999999999999999999999999999988888999999999 8999999999999999999999999998878
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHhh
Q 041211 83 ILPQDPYQRAMVRFWAKFIDEKILATGWKANFGEGKEREVAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVANLIAFW 162 (222)
Q Consensus 83 l~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~ 162 (222)
++|.++.+++++++|+.+++..+...........+...+...+.+.+.++.+|++|++++|++|+++|+||+++++.+.+
T Consensus 88 l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~AD~~l~~~~~~ 167 (211)
T PRK09481 88 LMPVYPVARGESRLMMHRIEKDWYSLMNKIVNGSASEADAARKQLREELLAIAPVFGEKPYFMSEEFSLVDCYLAPLLWR 167 (211)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCccHHHHHHHHHHHH
Confidence 99999999999999998887655444332222333445667788999999999999999999999999999999998876
Q ss_pred hHhhhhhhCcCCCCcccchhHHHHHHHHHhcccccccCCChh
Q 041211 163 FPVRQDALGIEAFTQEKFPVLFKWIANITKIDLVNECRPPRE 204 (222)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 204 (222)
+.. .+.++. ...+|+|.+|++++.+||++++++...+
T Consensus 168 ~~~----~~~~~~-~~~~p~l~~w~~~~~~rp~~~~~~~~~~ 204 (211)
T PRK09481 168 LPV----LGIELS-GPGAKELKGYMTRVFERDSFLASLTEAE 204 (211)
T ss_pred HHh----cCCCCC-CCCChhHHHHHHHHhccHHHHHHcCHHH
Confidence 632 244442 2579999999999999999999887554
No 3
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=5.4e-37 Score=235.97 Aligned_cols=192 Identities=21% Similarity=0.303 Sum_probs=157.7
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCC---CCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHhhcCCC
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLS---NKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDETWKNN 81 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~~ 81 (222)
||||+++.||+++||+++|+++||+|+.+.++.. +.+++++++||. |+||+|+++|.+|+||.+|++||++++++.
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~ 81 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPF-GQVPAIEDGDLKLFESRAIARYYATKYADQ 81 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCC-CCCCeEEECCEEEEehHHHHHHHHHHcCCc
Confidence 8999999999999999999999999999988865 468889999999 899999999999999999999999999643
Q ss_pred --CCCCCCHHHHHHHHHHHHHHhhhhhhhhh----hhhc----CC---chhHHHHHHHHHHHHHHHHHhcCCCccccCCC
Q 041211 82 --PILPQDPYQRAMVRFWAKFIDEKILATGW----KANF----GE---GKEREVAIEEFAEQMKFLENELNGKDFFEGET 148 (222)
Q Consensus 82 --~l~p~~~~~~a~~~~~~~~~~~~l~~~~~----~~~~----~~---~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~ 148 (222)
+++|.++.+++++++|+.+..+.+.+.+. ..++ .. ....+....++.+.++.||++|++++|++|++
T Consensus 82 ~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~ 161 (214)
T PLN02473 82 GTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATNRYLGGDE 161 (214)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccCCcccCCC
Confidence 68999999999999999888765543221 1111 11 12344566788999999999999889999999
Q ss_pred CCHHHHHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHhcccccccCC
Q 041211 149 IGFLDIVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDLVNECRP 201 (222)
Q Consensus 149 ~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 201 (222)
+|+||+++++.+.+...... ...+ .+++|+|.+|++++.++|++++++.
T Consensus 162 ~t~ADi~~~~~~~~~~~~~~--~~~~--~~~~P~l~~w~~~~~~~p~~~~~~~ 210 (214)
T PLN02473 162 FTLADLTHMPGMRYIMNETS--LSGL--VTSRENLNRWWNEISARPAWKKLME 210 (214)
T ss_pred CCHHHHHHHHHHHHHHhccc--cHHH--HhcCHHHHHHHHHHhcChhhHHHHH
Confidence 99999999998876532111 1122 3689999999999999999998764
No 4
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=1.3e-36 Score=233.80 Aligned_cols=193 Identities=22% Similarity=0.267 Sum_probs=159.3
Q ss_pred CC-CceEEEeec--CCcHHHHHHHHHHHcCCCceEeecCCCC---CchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHH
Q 041211 1 MA-EEVKLYGTW--VSPFSRRIELALKLKGVPFEYMEEDLSN---KSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYI 74 (222)
Q Consensus 1 M~-~~~~Ly~~~--~sp~~~~v~~~L~~~gi~y~~~~v~~~~---~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL 74 (222)
|+ ++|+||+.+ .||+|++++++|+++||+|+.+.++... ..++|+++||. |+||+|++||.+|+||.||++||
T Consensus 1 ~~~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~-g~VP~L~~~~~~l~ES~aI~~YL 79 (214)
T PRK15113 1 MSKPAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLT-RRVPTLQHDDFELSESSAIAEYL 79 (214)
T ss_pred CCCCeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCC-CCCCEEEECCEEEecHHHHHHHH
Confidence 66 689999976 7999999999999999999999998753 56899999999 89999999999999999999999
Q ss_pred HhhcCCCC---CCCCCHHHHHHHHHHHHHHhhhhhhhhhh-----hhcC--CchhHHHHHHHHHHHHHHHHHhcCC-Ccc
Q 041211 75 DETWKNNP---ILPQDPYQRAMVRFWAKFIDEKILATGWK-----ANFG--EGKEREVAIEEFAEQMKFLENELNG-KDF 143 (222)
Q Consensus 75 ~~~~~~~~---l~p~~~~~~a~~~~~~~~~~~~l~~~~~~-----~~~~--~~~~~~~~~~~~~~~l~~le~~L~~-~~~ 143 (222)
++++++.. ++|.++.+++++++|+.++++.+.+.... .+.. .....+...+.+.+.++.||++|++ ++|
T Consensus 80 ~~~~~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~ 159 (214)
T PRK15113 80 EERFAPPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPGQPN 159 (214)
T ss_pred HHHcCCCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99998665 99999999999999999998766543211 1111 1223455677889999999999975 579
Q ss_pred ccCCCCCHHHHHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHhcccccccCCChh
Q 041211 144 FEGETIGFLDIVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDLVNECRPPRE 204 (222)
Q Consensus 144 l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 204 (222)
++|+ +|+|||++++.+.++.. .+..+ .|+|.+|++|+.+||++++++++.+
T Consensus 160 l~G~-~TlADi~l~~~l~~~~~----~~~~~-----~p~l~~~~~r~~~rp~~~~~~~~~~ 210 (214)
T PRK15113 160 LFGE-WCIADTDLALMLNRLVL----HGDEV-----PERLADYATFQWQRASVQRWLALSA 210 (214)
T ss_pred eeCC-ccHHHHHHHHHHHHHHH----cCCCC-----CHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 9996 99999999999877632 23332 2999999999999999999876544
No 5
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=100.00 E-value=8.9e-36 Score=229.29 Aligned_cols=186 Identities=22% Similarity=0.278 Sum_probs=151.6
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCC---CchhHhhcCCCCCcccEEEe-----CC--eEeeehHHHHHHH
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSN---KSPELLKYNPVHKKIPVLVH-----NG--KPIAESLVILEYI 74 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~---~~~~~~~~~p~~g~vP~L~~-----~g--~~l~eS~aI~~yL 74 (222)
||||+.+ +|+|++|+++|+++||+|+.+.++... ..++|+++||. |+||+|++ +| .+|+||.||++||
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~-gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPN-NKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcC-CCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 7999877 789999999999999999999988753 46899999999 89999997 45 4799999999999
Q ss_pred HhhcCCCCCCCCCHHHHHHHHHHHHHHhhhhhhhhhhhh-c-C-----CchhHHHHHHHHHHHHHHHHHhcCCCccccCC
Q 041211 75 DETWKNNPILPQDPYQRAMVRFWAKFIDEKILATGWKAN-F-G-----EGKEREVAIEEFAEQMKFLENELNGKDFFEGE 147 (222)
Q Consensus 75 ~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~-~-~-----~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~ 147 (222)
+++++ .+.|.++.+++++++|+.|..+.+.+.+.... + . .+...+.....+.+.++.||++|++++|++|+
T Consensus 80 ~~~~~--~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd 157 (215)
T PRK13972 80 AEKTG--LFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGGE 157 (215)
T ss_pred HHhcC--CCCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhccCccccCC
Confidence 99986 36788899999999999998877665442211 1 1 12334556677889999999999989999999
Q ss_pred CCCHHHHHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHhcccccccCC
Q 041211 148 TIGFLDIVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDLVNECRP 201 (222)
Q Consensus 148 ~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 201 (222)
++|+|||++++.+..+.. . +..+ ..+|+|.+|++++.+||++++++.
T Consensus 158 ~~t~ADi~l~~~~~~~~~---~-~~~~---~~~P~l~~w~~r~~~rp~~~~~~~ 204 (215)
T PRK13972 158 NYSIADIACWPWVNAWTR---Q-RIDL---AMYPAVKNWHERIRSRPATGQALL 204 (215)
T ss_pred CCCHHHHHHHHHHHHHhh---c-CCcc---hhCHHHHHHHHHHHhCHHHHHHHH
Confidence 999999999887644321 1 3222 679999999999999999988764
No 6
>PRK10542 glutathionine S-transferase; Provisional
Probab=100.00 E-value=5.5e-36 Score=228.18 Aligned_cols=189 Identities=15% Similarity=0.303 Sum_probs=157.2
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCC----CchhHhhcCCCCCcccEEE-eCCeEeeehHHHHHHHHhhcC
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSN----KSPELLKYNPVHKKIPVLV-HNGKPIAESLVILEYIDETWK 79 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~----~~~~~~~~~p~~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~ 79 (222)
|+|||.+.| ++++++++|+++||+|+.+.++... .+++|.++||. |+||+|+ +||.+|+||.+|++||+++++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~-g~vPvL~~~~g~~l~eS~aI~~YL~~~~~ 78 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPK-GQVPALLLDDGTLLTEGVAIMQYLADSVP 78 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcC-CCCCeEEeCCCcEeecHHHHHHHHHHhCc
Confidence 689998876 7999999999999999999988752 45789999999 8999998 578999999999999999998
Q ss_pred CCCCC-CCCHHHHHHHHHHHHHHhhhhhhhhhhhhcCC--chhHHHHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHH
Q 041211 80 NNPIL-PQDPYQRAMVRFWAKFIDEKILATGWKANFGE--GKEREVAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVA 156 (222)
Q Consensus 80 ~~~l~-p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l 156 (222)
+..++ |.++.+++++++|+.++.+.+.+.+...+... ++........+.+.|+.||++|++++|++|+++|+||+++
T Consensus 79 ~~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~ADi~l 158 (201)
T PRK10542 79 DRQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKFQYVDEALADEQWICGQRFTIADAYL 158 (201)
T ss_pred ccccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCCcHHhHHH
Confidence 77666 56788999999999998777776554444322 2223456778999999999999988999999999999999
Q ss_pred HHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHhcccccccCCC
Q 041211 157 NLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDLVNECRPP 202 (222)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 202 (222)
++.+.+... .+.++ ..+|+|.+|++++.++|++++++..
T Consensus 159 ~~~~~~~~~----~~~~~---~~~p~l~~w~~~~~~~p~~k~~~~~ 197 (201)
T PRK10542 159 FTVLRWAYA----VKLNL---EGLEHIAAYMQRVAERPAVAAALKA 197 (201)
T ss_pred HHHHHHhhc----cCCCc---ccchHHHHHHHHHHcCHHHHHHHHH
Confidence 998877632 13333 6799999999999999999998654
No 7
>PLN02395 glutathione S-transferase
Probab=100.00 E-value=1.6e-35 Score=227.85 Aligned_cols=194 Identities=22% Similarity=0.310 Sum_probs=157.1
Q ss_pred CCCceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCC---CCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHhh
Q 041211 1 MAEEVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLS---NKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDET 77 (222)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~ 77 (222)
|+ +|||+...| +++|++++|+++|++|+.+.++.. +++++|+++||. |+||+|+++|.+|+||.+|++||+++
T Consensus 1 ~~--~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~ES~aI~~YL~~~ 76 (215)
T PLN02395 1 MV--LKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPF-GVVPVIVDGDYKIFESRAIMRYYAEK 76 (215)
T ss_pred Ce--EEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHHH
Confidence 66 899996664 699999999999999999998875 467899999999 89999999999999999999999999
Q ss_pred cCC--CCCCCCCHHHHHHHHHHHHHHhhhhhhhhhhhh----c-------CCchhHHHHHHHHHHHHHHHHHhcCCCccc
Q 041211 78 WKN--NPILPQDPYQRAMVRFWAKFIDEKILATGWKAN----F-------GEGKEREVAIEEFAEQMKFLENELNGKDFF 144 (222)
Q Consensus 78 ~~~--~~l~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~----~-------~~~~~~~~~~~~~~~~l~~le~~L~~~~~l 144 (222)
+++ ..++|.++.+++++++|+.+.+..+.+.+.... + .+++......+.+.+.++.||++|++++|+
T Consensus 77 ~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l 156 (215)
T PLN02395 77 YRSQGPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKSKYL 156 (215)
T ss_pred cCCCCcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 964 359999999999999999988766554432211 1 112234556788899999999999988999
Q ss_pred cCCCCCHHHHHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHhcccccccCCC
Q 041211 145 EGETIGFLDIVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDLVNECRPP 202 (222)
Q Consensus 145 ~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 202 (222)
+|+++|+||+++++.+.++.. ....... ...+|+|.+|++++.++|++++++..
T Consensus 157 ~G~~~s~ADi~l~~~~~~~~~--~~~~~~~--~~~~p~L~~w~~~~~~rp~~k~~~~~ 210 (215)
T PLN02395 157 AGDFVSLADLAHLPFTEYLVG--PIGKAYL--IKDRKHVSAWWDDISSRPAWKEVLAK 210 (215)
T ss_pred cCCCcCHHHHHHHHHHHHHhc--ccchhhh--hccCchHHHHHHHHHcChHHHHHHHH
Confidence 999999999999998766521 1001111 36789999999999999999997654
No 8
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-35 Score=224.58 Aligned_cols=185 Identities=30% Similarity=0.540 Sum_probs=160.2
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCC--CCchhHhhcCCCCCcccEEEeCCe-EeeehHHHHHHHHhhcCCC
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLS--NKSPELLKYNPVHKKIPVLVHNGK-PIAESLVILEYIDETWKNN 81 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~--~~~~~~~~~~p~~g~vP~L~~~g~-~l~eS~aI~~yL~~~~~~~ 81 (222)
++||+++.||+|+|++++|.++|++|+.+.++.. +++++|+++||. |+||+|+++|. +|+||.||++||++++|+.
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~-gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPL-GKVPALVDDDGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCC-CCCCEEeeCCCCeeecHHHHHHHHHhhCCCC
Confidence 6899999999999999999999999999999987 578999999999 89999998765 8999999999999999877
Q ss_pred CCCCCCHH---HHHHHHHHHHHHhhhhhhhhhhhhcC--------CchhHHHHHHHHHHHHHHHHHhcCCCccccCCCCC
Q 041211 82 PILPQDPY---QRAMVRFWAKFIDEKILATGWKANFG--------EGKEREVAIEEFAEQMKFLENELNGKDFFEGETIG 150 (222)
Q Consensus 82 ~l~p~~~~---~~a~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t 150 (222)
.++|.++. +++.+..|+.+..+.+.+.+...... .+...+...+.+.+.++.+|..|++++|++|+++|
T Consensus 80 ~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t 159 (211)
T COG0625 80 PLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLADGPYLAGDRFT 159 (211)
T ss_pred CcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCC
Confidence 69998775 88888899999988777776554432 23455677888999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHhccccc
Q 041211 151 FLDIVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDLVN 197 (222)
Q Consensus 151 ~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~ 197 (222)
+||+++++.+.++... +..+ +.+|++.+|++|+.++|+++
T Consensus 160 iAD~~~~~~~~~~~~~----~~~~---~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 160 IADIALAPLLWRLALL----GEEL---ADYPALKAWYERVLARPAFR 199 (211)
T ss_pred HHHHHHHHHHHHhhhc----Cccc---ccChHHHHHHHHHHcCCchh
Confidence 9999999998886322 3333 67999999999999999965
No 9
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=100.00 E-value=3.9e-35 Score=224.97 Aligned_cols=190 Identities=29% Similarity=0.466 Sum_probs=156.1
Q ss_pred EEEeecCCcHHHHHHHHHHHcCCCceEeecCCC----CCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHhhcCCC
Q 041211 6 KLYGTWVSPFSRRIELALKLKGVPFEYMEEDLS----NKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDETWKNN 81 (222)
Q Consensus 6 ~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~----~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~~ 81 (222)
+||++..||++++++++|+++||+|+.+.++.. ...+++.++||+ |+||+|+++|.+|+||.+|++||++++++.
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~ 79 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQ-GLVPTLDIDGEVLTQSLAIIEYLEETYPDP 79 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCC-CcCCEEEECCEEeecHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999998862 356789999999 899999999999999999999999999877
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhhhhhh----hhhhcC----Cch-hHHHHHHHHHHHHHHHHHhcCC--CccccCCCCC
Q 041211 82 PILPQDPYQRAMVRFWAKFIDEKILATG----WKANFG----EGK-EREVAIEEFAEQMKFLENELNG--KDFFEGETIG 150 (222)
Q Consensus 82 ~l~p~~~~~~a~~~~~~~~~~~~l~~~~----~~~~~~----~~~-~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t 150 (222)
.++|.++.+++++++|+.++...+.+.. ...+.. .++ ..+...+.+.+.|+.||++|++ ++|++|+++|
T Consensus 80 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T 159 (210)
T TIGR01262 80 PLLPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTPT 159 (210)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCCC
Confidence 7999999999999999998876554321 111111 112 2233456689999999999985 5699999999
Q ss_pred HHHHHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHhcccccccCCCh
Q 041211 151 FLDIVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDLVNECRPPR 203 (222)
Q Consensus 151 ~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 203 (222)
+|||++++.+.+... . +..+ ..+|+|.+|+++|.+||+++++....
T Consensus 160 ~ADi~~~~~l~~~~~---~-~~~~---~~~p~l~~~~~~~~~rp~~~~~~~~~ 205 (210)
T TIGR01262 160 LADLCLVPQVYNAER---F-GVDL---TPYPTLRRIAAALAALPAFQRAHPEN 205 (210)
T ss_pred HHHHHHHHHHHHHHH---c-CCCc---ccchHHHHHHHHHhcCHHHHHhCccc
Confidence 999999999887631 1 3333 67999999999999999999988643
No 10
>PRK10357 putative glutathione S-transferase; Provisional
Probab=100.00 E-value=1.1e-34 Score=221.16 Aligned_cols=192 Identities=26% Similarity=0.361 Sum_probs=156.5
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEE-eCCeEeeehHHHHHHHHhhcCCCCC
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLV-HNGKPIAESLVILEYIDETWKNNPI 83 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~~l 83 (222)
|+||+++.||++++|+++|+++|++|+.+.++....++++.+.||. |+||+|+ ++|.+|+||.+|++||++++++..+
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~-g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~l 79 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPL-GKVPALVTEEGECWFDSPIIAEYIELLNVAPAM 79 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCc-cCCCeEEeCCCCeeecHHHHHHHHHHhCCCCCC
Confidence 5899999999999999999999999999988877667788889999 8999998 5789999999999999999987779
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhhhhhhhhh---cC----CchhHHHHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHH
Q 041211 84 LPQDPYQRAMVRFWAKFIDEKILATGWKAN---FG----EGKEREVAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVA 156 (222)
Q Consensus 84 ~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~---~~----~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l 156 (222)
+|.++.+++++++|+.+.++.+........ .. .+...+.....+.+.|+.||++|.+++ ++|+++|+||+++
T Consensus 80 ~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~-l~Gd~~t~ADi~l 158 (202)
T PRK10357 80 LPRDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVDGT-LKTDTVNLATIAI 158 (202)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhccCc-ccCCCcCHHHHHH
Confidence 999999999999998887664433321111 11 112234566789999999999998877 9999999999999
Q ss_pred HHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHhcccccccCCC
Q 041211 157 NLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDLVNECRPP 202 (222)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 202 (222)
++.+.++... ..+..+ ..++|+|.+|++++.+||+++++.++
T Consensus 159 ~~~l~~~~~~--~~~~~~--~~~~p~l~~~~~~i~~rp~~~~~~~~ 200 (202)
T PRK10357 159 ACAVGYLNFR--RVAPGW--CVDRPHLVKLVENLFQRESFARTEPP 200 (202)
T ss_pred HHHHHHHHhc--ccCcch--hhcChHHHHHHHHHhcChhhhhcCCC
Confidence 9998876421 112222 25799999999999999999998764
No 11
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=100.00 E-value=6.9e-34 Score=218.97 Aligned_cols=197 Identities=19% Similarity=0.220 Sum_probs=159.6
Q ss_pred ecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHhhcCC---CCCCCC
Q 041211 10 TWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDETWKN---NPILPQ 86 (222)
Q Consensus 10 ~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~---~~l~p~ 86 (222)
...||+|++|+++|.++||+|+.+.+++..++++|+++||. |+||+|+++|.+|+||.+|++||+++++. +.+.|.
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~-g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p~ 94 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPG-THPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSPK 94 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcC-CCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCCC
Confidence 46899999999999999999999999999889999999999 89999999999999999999999999964 346666
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhhhhhhcC-CchhHHHHHHHHHHHHHHHHHhcC------------------CCccccCC
Q 041211 87 DPYQRAMVRFWAKFIDEKILATGWKANFG-EGKEREVAIEEFAEQMKFLENELN------------------GKDFFEGE 147 (222)
Q Consensus 87 ~~~~~a~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~------------------~~~~l~G~ 147 (222)
++..++.... ++..+...+.+ .++..+...+.+.+.|+.||++|. +++|+.|+
T Consensus 95 ~~~~~~~~~~--------l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~~Gd 166 (236)
T TIGR00862 95 HPESNTAGLD--------IFAKFSAYIKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFLDGD 166 (236)
T ss_pred CHHHHHHHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCCcccCC
Confidence 6655543221 22222222222 223344556668999999999996 57999999
Q ss_pred CCCHHHHHHHHHHhhhHhh-hhhhCcCCCCcccchhHHHHHHHHHhcccccccCCChhhHHHHHHHHHHhh
Q 041211 148 TIGFLDIVANLIAFWFPVR-QDALGIEAFTQEKFPVLFKWIANITKIDLVNECRPPREKHLAFVKARIEGL 217 (222)
Q Consensus 148 ~~t~aD~~l~~~l~~~~~~-~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 217 (222)
++|+|||++++.+.++... ....+.++ .+++|+|.+|++++.++|+|+++++..+.+...+...++++
T Consensus 167 ~~tlaD~~l~p~l~~l~~~~~~~~~~~i--~~~~p~l~~w~~~~~~~~sf~~t~p~~~~i~~~~~~~~~~~ 235 (236)
T TIGR00862 167 ELTLADCNLLPKLHIVKVVAKKYRNFDI--PAEFTGVWRYLSNAYAREEFTNTCPDDKEIELAYADVAKRL 235 (236)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHhCcCc--cccCchHHHHHHHHhccchHHhhCCChHHHHHHHHHHhhcC
Confidence 9999999999999888643 23446665 48899999999999999999999999999999988876654
No 12
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-35 Score=206.66 Aligned_cols=195 Identities=26% Similarity=0.444 Sum_probs=166.4
Q ss_pred CCceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCC----CchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHhh
Q 041211 2 AEEVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSN----KSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDET 77 (222)
Q Consensus 2 ~~~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~----~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~ 77 (222)
+.+.+||++..|..++|||++|+.+||+|+.+.+++.. ...+|.++||+ ++||+|++||.+|+||.||++||++.
T Consensus 3 ~~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm-~kVP~L~i~g~tl~eS~AII~YLeEt 81 (217)
T KOG0868|consen 3 AAKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPM-EKVPTLVIDGLTLTESLAIIEYLEET 81 (217)
T ss_pred cccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCch-hhCCeEEECCEEeehHHHHHHHHHhc
Confidence 35899999999999999999999999999999998762 45689999999 89999999999999999999999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhc---CCchh---HHHHHHHHHHHHHHHHHhcCC--CccccCCCC
Q 041211 78 WKNNPILPQDPYQRAMVRFWAKFIDEKILATGWKANF---GEGKE---REVAIEEFAEQMKFLENELNG--KDFFEGETI 149 (222)
Q Consensus 78 ~~~~~l~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~---~~~~~---~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~ 149 (222)
+|++.|+|.|+..||.+++....+.+.+.|......+ +.++. ..-+...+.+.|..||+.|.. ++|-+||++
T Consensus 82 ~P~ppLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~aGkycvGDev 161 (217)
T KOG0868|consen 82 YPDPPLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSHAGKYCVGDEV 161 (217)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHccCCcccCcee
Confidence 9999999999999999999999988877765433222 22222 445677788999999999964 889999999
Q ss_pred CHHHHHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHhcccccccCCChh
Q 041211 150 GFLDIVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDLVNECRPPRE 204 (222)
Q Consensus 150 t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 204 (222)
|+||+++.+.+...+.+ ..++ ..||.+.+..+.+.+.|+|+.++++.+
T Consensus 162 tiADl~L~pqv~nA~rf----~vdl---~PYPti~ri~e~l~elpaFq~ahP~nQ 209 (217)
T KOG0868|consen 162 TIADLCLPPQVYNANRF----HVDL---TPYPTITRINEELAELPAFQAAHPDNQ 209 (217)
T ss_pred ehhhhccchhhhhhhhc----cccC---CcCchHHHHHHHHHhCHHHHhcCCCCC
Confidence 99999999988876432 3334 789999999999999999999887653
No 13
>PRK11752 putative S-transferase; Provisional
Probab=100.00 E-value=1.2e-33 Score=223.10 Aligned_cols=196 Identities=18% Similarity=0.217 Sum_probs=152.8
Q ss_pred ceEEEeecCCcHHHHHHHHHHHc------CCCceEeecCCC---CCchhHhhcCCCCCcccEEEeC----CeEeeehHHH
Q 041211 4 EVKLYGTWVSPFSRRIELALKLK------GVPFEYMEEDLS---NKSPELLKYNPVHKKIPVLVHN----GKPIAESLVI 70 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~------gi~y~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~----g~~l~eS~aI 70 (222)
+||||+.+ ||+|+||+++|+++ |++|+.+.++.. +.+++|+++||. |+||+|+++ |.+|+||.||
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~-GkVP~Lv~~dg~~~~~L~ES~AI 121 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPN-SKIPALLDRSGNPPIRVFESGAI 121 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCC-CCCCEEEeCCCCCCeEEEcHHHH
Confidence 69999865 89999999999997 899999998875 357899999999 899999984 3699999999
Q ss_pred HHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHhhhhhh---hhhhhh-cCC---chhHHHHHHHHHHHHHHHHHhcCCCcc
Q 041211 71 LEYIDETWKNNPILPQDPYQRAMVRFWAKFIDEKILA---TGWKAN-FGE---GKEREVAIEEFAEQMKFLENELNGKDF 143 (222)
Q Consensus 71 ~~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~l~~---~~~~~~-~~~---~~~~~~~~~~~~~~l~~le~~L~~~~~ 143 (222)
++||+++++. ++|.++.+++++++|+.+.+..... .+...+ ... +...+....++.+.|+.||++|++++|
T Consensus 122 l~YL~~~~~~--L~P~~~~era~v~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~~~f 199 (264)
T PRK11752 122 LLYLAEKFGA--FLPKDLAARTETLNWLFWQQGSAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAEHEY 199 (264)
T ss_pred HHHHHHhcCC--cCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 9999999973 8999999999999999987654211 111111 111 112344566788999999999998899
Q ss_pred ccCCCCCHHHHHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHhcccccccCCCh
Q 041211 144 FEGETIGFLDIVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDLVNECRPPR 203 (222)
Q Consensus 144 l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 203 (222)
|+|+++|+|||++++.+.++...........++...+|+|.+|+++|.++|++++++..+
T Consensus 200 l~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~~~~ 259 (264)
T PRK11752 200 IAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGRIVN 259 (264)
T ss_pred CCCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHHHHHHhcc
Confidence 999999999999998876663210000111122367999999999999999999977554
No 14
>PLN02378 glutathione S-transferase DHAR1
Probab=100.00 E-value=1e-32 Score=211.80 Aligned_cols=187 Identities=21% Similarity=0.279 Sum_probs=145.2
Q ss_pred eecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHhhcCCCCCCCCCH
Q 041211 9 GTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDETWKNNPILPQDP 88 (222)
Q Consensus 9 ~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~l~p~~~ 88 (222)
++..||||+||+++|+++|++|+.+.+++.+++++|+++||. |+||+|+++|.+|+||.+|++||++++++..+ .++
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~-G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l--~~~ 92 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQ-GKVPVLKIDDKWVTDSDVIVGILEEKYPDPPL--KTP 92 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHhCCCCCC--CCH
Confidence 456799999999999999999999999998888999999999 89999999999999999999999999986555 356
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhcC--CCccccCCCCCHHHHHHHHHHhhhHhh
Q 041211 89 YQRAMVRFWAKFIDEKILATGWKANFGEGKEREVAIEEFAEQMKFLENELN--GKDFFEGETIGFLDIVANLIAFWFPVR 166 (222)
Q Consensus 89 ~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~--~~~~l~G~~~t~aD~~l~~~l~~~~~~ 166 (222)
.+++.+...+. ..+...+.. ....+...+.+.+.|+.||++|+ +++|++|+++|+||+++++.+.++...
T Consensus 93 ~~~a~i~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~l~~~ 164 (213)
T PLN02378 93 AEFASVGSNIF-------GTFGTFLKS-KDSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVA 164 (213)
T ss_pred HHHHHHHHHHH-------HHHHHHHhc-CChhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchhhHHHHHHHHHHHHH
Confidence 66776554332 112111222 11223345677888999999997 478999999999999999998776432
Q ss_pred h-hhhCcCCCCcccchhHHHHHHHHHhcccccccCCChhhHHH
Q 041211 167 Q-DALGIEAFTQEKFPVLFKWIANITKIDLVNECRPPREKHLA 208 (222)
Q Consensus 167 ~-~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~ 208 (222)
. ...+.+. .+.+|+|.+|+++|.+||++++++........
T Consensus 165 ~~~~~~~~~--~~~~p~l~~w~~~~~~rpa~~~~~~~~~~~~~ 205 (213)
T PLN02378 165 LGHFKSWSV--PESFPHVHNYMKTLFSLDSFEKTKTEEKYVIS 205 (213)
T ss_pred HHHhcCCCc--hhHhHHHHHHHHHHhcCCCeecccCChHHHHH
Confidence 1 1112222 36799999999999999999999877655433
No 15
>PTZ00057 glutathione s-transferase; Provisional
Probab=100.00 E-value=3.6e-33 Score=213.18 Aligned_cols=191 Identities=19% Similarity=0.230 Sum_probs=142.3
Q ss_pred CCCceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHh--------hcCCCCCcccEEEeCCeEeeehHHHHH
Q 041211 1 MAEEVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELL--------KYNPVHKKIPVLVHNGKPIAESLVILE 72 (222)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~--------~~~p~~g~vP~L~~~g~~l~eS~aI~~ 72 (222)
|+++++|||++.++++++||++|+++|++|+.+.++. ... ++. +.||+ |+||+|++||.+|+||.||++
T Consensus 1 m~~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~-~~~-~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~eS~AI~~ 77 (205)
T PTZ00057 1 MAEEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE-NGD-AFIEFKNFKKEKDTPF-EQVPILEMDNIIFAQSQAIVR 77 (205)
T ss_pred CCCceEEEecCCCcchHHHHHHHHHcCCCeEEEeccc-cch-HHHHHHhccccCCCCC-CCCCEEEECCEEEecHHHHHH
Confidence 8888999999999999999999999999999997743 222 332 47999 899999999999999999999
Q ss_pred HHHhhcCCCCCCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhcCC--CccccCCCCC
Q 041211 73 YIDETWKNNPILPQDPYQRAMVRFWAKFIDEKILATGWKANFGEGKEREVAIEEFAEQMKFLENELNG--KDFFEGETIG 150 (222)
Q Consensus 73 yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t 150 (222)
||+++++ +.+.+..+++.++....... .+...+.......+...+...+.+.+.++.||+.|++ ++|++|+++|
T Consensus 78 YLa~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~~T 153 (205)
T PTZ00057 78 YLSKKYK---ICGESELNEFYADMIFCGVQ-DIHYKFNNTNLFKQNETTFLNEELPKWSGYFENILKKNHCNYFVGDNLT 153 (205)
T ss_pred HHHHHcC---CCCCCHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCccc
Confidence 9999997 44555544444443332221 2222111110001122234567889999999999964 3899999999
Q ss_pred HHHHHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHhcccccccCCChh
Q 041211 151 FLDIVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDLVNECRPPRE 204 (222)
Q Consensus 151 ~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 204 (222)
+||+++++.+.++.. ..+.++ ..+|+|.+|++|+.++|++++++.++.
T Consensus 154 ~AD~~l~~~~~~~~~---~~~~~l---~~~P~l~~~~~r~~~~P~~k~y~~~~~ 201 (205)
T PTZ00057 154 YADLAVFNLYDDIET---KYPNSL---KNFPLLKAHNEFISNLPNIKNYISNRK 201 (205)
T ss_pred HHHHHHHHHHHHHHH---hChhhh---ccChhHHHHHHHHHhChHHHHHHHhCC
Confidence 999999998877642 113333 689999999999999999999886554
No 16
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=100.00 E-value=1.6e-32 Score=215.78 Aligned_cols=190 Identities=21% Similarity=0.271 Sum_probs=149.0
Q ss_pred ecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHhhcCCCCCCCCCHH
Q 041211 10 TWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDETWKNNPILPQDPY 89 (222)
Q Consensus 10 ~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~l~p~~~~ 89 (222)
...||||+|++++|+++||+|+.+.+++.+++++|+++||. |+||+|+++|.+|+||.+|++||++++++..+. ++.
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~-GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~--~~~ 146 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPE-GKVPVVKLDEKWVADSDVITQALEEKYPDPPLA--TPP 146 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCC-CCCCEEEECCEEEecHHHHHHHHHHHCCCCCCC--CHH
Confidence 44599999999999999999999999998889999999999 899999999999999999999999999876553 567
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhcCC-CccccCCCCCHHHHHHHHHHhhhHhhh-
Q 041211 90 QRAMVRFWAKFIDEKILATGWKANFGEGKEREVAIEEFAEQMKFLENELNG-KDFFEGETIGFLDIVANLIAFWFPVRQ- 167 (222)
Q Consensus 90 ~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~aD~~l~~~l~~~~~~~- 167 (222)
+++.+..++.. .+...+.. ..........+.+.|..||++|++ ++|++|+++|+|||++++.+.++....
T Consensus 147 era~i~~~l~~-------~~~~~~~~-~~~~~~~~~~l~~~l~~LE~~L~~~g~yl~Gd~~SlADi~l~p~L~~l~~~~~ 218 (265)
T PLN02817 147 EKASVGSKIFS-------TFIGFLKS-KDPGDGTEQALLDELTSFDDYIKENGPFINGEKISAADLSLGPKLYHLEIALG 218 (265)
T ss_pred HHHHHHHHHHH-------HHHHHhcc-CCcchHHHHHHHHHHHHHHHHHhcCCCeeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 78877665421 11111211 111122345677889999999974 799999999999999999988774321
Q ss_pred hhhCcCCCCcccchhHHHHHHHHHhcccccccCCChhhHHHHHHH
Q 041211 168 DALGIEAFTQEKFPVLFKWIANITKIDLVNECRPPREKHLAFVKA 212 (222)
Q Consensus 168 ~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 212 (222)
...+.++ .+.+|+|.+|++++.++|+|+++....+.+...+..
T Consensus 219 ~~~~~~i--~~~~P~L~~w~~ri~~rps~~~~~~~~~~~~~~~~~ 261 (265)
T PLN02817 219 HYKNWSV--PDSLPFVKSYMKNIFSMESFVKTRALPEDVIAGWRP 261 (265)
T ss_pred HhcCCCc--cccCHHHHHHHHHHhcchhHhhcCCCHHHHHHHhHh
Confidence 1223333 368999999999999999999999887766655543
No 17
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-31 Score=206.03 Aligned_cols=196 Identities=27% Similarity=0.375 Sum_probs=166.4
Q ss_pred ceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCC---CCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHhhcC-
Q 041211 4 EVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLS---NKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDETWK- 79 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~~~- 79 (222)
.++||++..||.|+++.+++.++|++|+.+.++.. +.+++|+++||. |+||+|+|+|..++||.||+.||.++|.
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~-~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~ 80 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPL-GKVPALEDGGLTLWESHAILRYLAEKYGP 80 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcC-CCCCeEecCCeEEeeHHHHHHHHHHHcCC
Confidence 48999999999999999999999999999977764 789999999999 8999999999999999999999999985
Q ss_pred CCC-CCCCCHHHHHHHHHHHHHHhhhhhhhh--hhhhcC-------CchhHHHHHHHHHHHHHHHHHhcCCCccccCCCC
Q 041211 80 NNP-ILPQDPYQRAMVRFWAKFIDEKILATG--WKANFG-------EGKEREVAIEEFAEQMKFLENELNGKDFFEGETI 149 (222)
Q Consensus 80 ~~~-l~p~~~~~~a~~~~~~~~~~~~l~~~~--~~~~~~-------~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~ 149 (222)
... ++|.+..+++.+++|+.+..+.+.+.. ...+.+ +..........+.+.++.+|+.|.++.|+.|+++
T Consensus 81 ~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~yl~g~~~ 160 (226)
T KOG0867|consen 81 LGGILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQVYLAGDQL 160 (226)
T ss_pred CCcccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccCCcccCCcc
Confidence 334 899999999999999999888877763 222222 4556778899999999999999999999999999
Q ss_pred CHHHHHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHhcccccccCCChh
Q 041211 150 GFLDIVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDLVNECRPPRE 204 (222)
Q Consensus 150 t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 204 (222)
|+||+.+.+.+..+.. ...+.. +..++|++.+|++++.++|+++++.....
T Consensus 161 tlADl~~~~~~~~~~~--~~~~~~--~~~~~p~v~~W~~~~~~~P~~~e~~~~~~ 211 (226)
T KOG0867|consen 161 TLADLSLASTLSQFQG--KFATEK--DFEKYPKVARWYERIQKRPAYEEANEKGA 211 (226)
T ss_pred cHHHHHHhhHHHHHhH--hhhhhh--hhhhChHHHHHHHHHHhCccHHHHHHHHH
Confidence 9999999998887731 111121 25889999999999999999887654333
No 18
>PRK10387 glutaredoxin 2; Provisional
Probab=99.98 E-value=1.8e-31 Score=204.69 Aligned_cols=178 Identities=20% Similarity=0.211 Sum_probs=138.2
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEE-eCCeEeeehHHHHHHHHhhcCCCCC
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLV-HNGKPIAESLVILEYIDETWKNNPI 83 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~~l 83 (222)
||||++..||+|+|++++|+++||+|+.+.++..... .-.+.||. |+||+|+ ++|.+|+||.+|++||+++|++..+
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~~~~~p~-~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l 78 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEA-TPIRMIGQ-KQVPILQKDDGSYMPESLDIVHYIDELDGKPLL 78 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchh-hHHHhcCC-cccceEEecCCeEecCHHHHHHHHHHhCCCccC
Confidence 6899999999999999999999999999988655322 22578998 8999994 7899999999999999999986544
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhhhhhhhhhcC----C---ch---------------------hHHHHHHHHHHHHHHHH
Q 041211 84 LPQDPYQRAMVRFWAKFIDEKILATGWKANFG----E---GK---------------------EREVAIEEFAEQMKFLE 135 (222)
Q Consensus 84 ~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~----~---~~---------------------~~~~~~~~~~~~l~~le 135 (222)
.+ .+++.+++|+.+....+...+...+.. . .. ..+...+.+.+.|+.+|
T Consensus 79 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le 155 (210)
T PRK10387 79 TG---KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRALD 155 (210)
T ss_pred CC---cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHHH
Confidence 32 257788888887765554333221110 0 00 01345678899999999
Q ss_pred HhcCCCccccCCCCCHHHHHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHhcccc
Q 041211 136 NELNGKDFFEGETIGFLDIVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDLV 196 (222)
Q Consensus 136 ~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 196 (222)
++|++ +|++|+++|+||+++++.+.++... .+. ..+|+|.+|++||.+||++
T Consensus 156 ~~L~~-~~l~G~~~s~ADi~l~~~l~~~~~~---~~~-----~~~p~l~~w~~r~~~r~~~ 207 (210)
T PRK10387 156 PLIVK-PNAVNGELSTDDIHLFPILRNLTLV---KGI-----EWPPRVADYRDNMSKKTQV 207 (210)
T ss_pred HHhcC-ccccCCCCCHHHHHHHHHHhcceee---cCC-----CCCHHHHHHHHHHHHHhCC
Confidence 99987 9999999999999999999887431 121 2369999999999999976
No 19
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.97 E-value=6.6e-29 Score=190.07 Aligned_cols=176 Identities=19% Similarity=0.259 Sum_probs=132.9
Q ss_pred EEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEE-eCCeEeeehHHHHHHHHhhcCCCCCC
Q 041211 6 KLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLV-HNGKPIAESLVILEYIDETWKNNPIL 84 (222)
Q Consensus 6 ~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~~l~ 84 (222)
|||++..||+|+||+++|+++|++|+.+.++.... ....+.||. |+||+|+ +||.+|+||.+|++||+++|+.+.+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~~~~~np~-g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~~ 78 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDE-ETPIRMIGA-KQVPILQKDDGRAMPESLDIVAYFDKLDGEPLLT 78 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcc-hhHHHhcCC-CCcceEEeeCCeEeccHHHHHHHHHHhCCCccCC
Confidence 68999999999999999999999999987755432 234788998 8999998 78999999999999999999764343
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhhhhhhhcC-----------------Cch-----------hHHHHHHHHHHHHHHHHH
Q 041211 85 PQDPYQRAMVRFWAKFIDEKILATGWKANFG-----------------EGK-----------EREVAIEEFAEQMKFLEN 136 (222)
Q Consensus 85 p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~-----------------~~~-----------~~~~~~~~~~~~l~~le~ 136 (222)
|. .++.+.+|+.+....+...+...+.. ..+ ..+...+.+.+.|+.+|+
T Consensus 79 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~le~ 155 (209)
T TIGR02182 79 GK---VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEELDK 155 (209)
T ss_pred CC---ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHHHH
Confidence 32 45667777776655443332221110 000 013456778999999999
Q ss_pred hcCCCccccCCCCCHHHHHHHHHHhhhHhhhhhhCcCCCCcccch-hHHHHHHHHHhcccc
Q 041211 137 ELNGKDFFEGETIGFLDIVANLIAFWFPVRQDALGIEAFTQEKFP-VLFKWIANITKIDLV 196 (222)
Q Consensus 137 ~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p-~l~~~~~~~~~~p~~ 196 (222)
+|++++|++| ++|+||+++++.+.++... .+ ..+| +|.+|++||++++++
T Consensus 156 ~L~~~~~l~g-~~TiADi~l~~~l~~~~~~---~~------~~~p~~l~~w~~Ri~ar~~~ 206 (209)
T TIGR02182 156 LIDGPNAVNG-ELSEDDILVFPLLRNLTLV---AG------INWPSRVADYLDNMSKKSKV 206 (209)
T ss_pred HHhCccccCC-CCCHHHHHHHHHhcCeeee---cC------CCCChHHHHHHHHHHHHhCC
Confidence 9999999955 6999999999999887421 11 1256 999999999999865
No 20
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-28 Score=183.99 Aligned_cols=194 Identities=20% Similarity=0.239 Sum_probs=159.3
Q ss_pred CCCceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHhhcCC
Q 041211 1 MAEEVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDETWKN 80 (222)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~ 80 (222)
|. .+||+|++..+++..+|++++..|++|+.+.++..+..+..+...|+ |++|+|..||..|.||.||++||+++++
T Consensus 1 m~-~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pf-gqlP~l~vDg~~i~QS~AI~RyLArk~g- 77 (206)
T KOG1695|consen 1 MP-PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPF-GQLPVLEVDGKKLVQSRAILRYLARKFG- 77 (206)
T ss_pred CC-ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCC-CCCCEEeECCEeeccHHHHHHHHHHHhC-
Confidence 55 79999999999999999999999999999999887655556666898 8999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhcCC-----chhHH-HHHHHHHHHHHHHHHhcC--CCccccCCCCCHH
Q 041211 81 NPILPQDPYQRAMVRFWAKFIDEKILATGWKANFGE-----GKERE-VAIEEFAEQMKFLENELN--GKDFFEGETIGFL 152 (222)
Q Consensus 81 ~~l~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~-~~~~~~~~~l~~le~~L~--~~~~l~G~~~t~a 152 (222)
+.|+++.+.+.++.+.+...+.....+...+... ++..+ .......+.++.+++.|. +++||+|+++|+|
T Consensus 78 --l~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~lT~a 155 (206)
T KOG1695|consen 78 --LAGKTEEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDKLTWA 155 (206)
T ss_pred --cCCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCcccHH
Confidence 9999999999999988887775444344433321 11122 455567888999999997 4679999999999
Q ss_pred HHHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHhcccccccCCChh
Q 041211 153 DIVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDLVNECRPPRE 204 (222)
Q Consensus 153 D~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 204 (222)
|+.++..+..+... . ..+. ...+|+|.++.+++.++|.+++++..+.
T Consensus 156 Dl~i~e~l~~l~~~--~-~~~~--~~~~P~L~a~~~kv~~~p~ik~~i~~r~ 202 (206)
T KOG1695|consen 156 DLVIAEHLDTLEEL--L-DPSA--LDHFPKLKAFKERVSSIPNIKKYLESRP 202 (206)
T ss_pred HHHHHHHHHHHHHh--c-Cchh--hccChHHHHHHHHHhcCchHHHHHhcCC
Confidence 99999988877432 1 2232 3678999999999999999999887654
No 21
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.95 E-value=3e-27 Score=177.25 Aligned_cols=202 Identities=17% Similarity=0.244 Sum_probs=147.3
Q ss_pred ceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCC---CCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHhhc-C
Q 041211 4 EVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLS---NKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDETW-K 79 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~~-~ 79 (222)
.+.||+++.|-.++|||++++|+||+|+...|++. ++.+||..+||. |.||||+++..+|.|+..|++|++++| +
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~-gevPVl~~g~~II~d~tqIIdYvErtf~g 104 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPG-GEVPVLIHGDNIISDYTQIIDYVERTFTG 104 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCC-CCCceEecCCeecccHHHHHHHHHHhhcc
Confidence 48999999998899999999999999999999876 589999999998 899999999999999999999999999 5
Q ss_pred CCCCCCC-CHHHHHHHHHHHHH-----Hhh-----hhhh---------hhh---hhh-----------cC----------
Q 041211 80 NNPILPQ-DPYQRAMVRFWAKF-----IDE-----KILA---------TGW---KAN-----------FG---------- 115 (222)
Q Consensus 80 ~~~l~p~-~~~~~a~~~~~~~~-----~~~-----~l~~---------~~~---~~~-----------~~---------- 115 (222)
+..|.|. +..+-.++...... +++ .+++ ... ... ..
T Consensus 105 er~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~ 184 (325)
T KOG4420|consen 105 ERVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYL 184 (325)
T ss_pred cccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHH
Confidence 5667773 22222222211111 110 0111 111 000 00
Q ss_pred --------------CchhHHHHHHHHHHHHHHHHHhcCC----CccccCCCCCHHHHHHHHHHhhhHhhhhhhCcCCCCc
Q 041211 116 --------------EGKEREVAIEEFAEQMKFLENELNG----KDFFEGETIGFLDIVANLIAFWFPVRQDALGIEAFTQ 177 (222)
Q Consensus 116 --------------~~~~~~~~~~~~~~~l~~le~~L~~----~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~ 177 (222)
+.....+..+.+...|+.+|..|.+ ..||+|+.+|+||+.+.+.|+++..+.. ....+..
T Consensus 185 akqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~--e~~yw~~ 262 (325)
T KOG4420|consen 185 AKQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGL--EKKYWED 262 (325)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHccc--HHHhccc
Confidence 1112233455567777777888866 6899999999999999999999875422 1122334
Q ss_pred ccchhHHHHHHHHHhcccccccCCChhhHHH
Q 041211 178 EKFPVLFKWIANITKIDLVNECRPPREKHLA 208 (222)
Q Consensus 178 ~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~ 208 (222)
...|||..|+.|+++|++|++++...-.+.-
T Consensus 263 gsrpnle~Yf~rvrrR~sf~kvlg~~fnilr 293 (325)
T KOG4420|consen 263 GSRPNLESYFERVRRRFSFRKVLGDIFNILR 293 (325)
T ss_pred CCCccHHHHHHHHHhhhHHHHhhhhHHHHHH
Confidence 6899999999999999999999987655443
No 22
>PLN02907 glutamate-tRNA ligase
Probab=99.91 E-value=1.1e-23 Score=184.48 Aligned_cols=158 Identities=20% Similarity=0.262 Sum_probs=131.0
Q ss_pred CCCceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEe-CCeEeeehHHHHHHHHhhcC
Q 041211 1 MAEEVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVH-NGKPIAESLVILEYIDETWK 79 (222)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~-~g~~l~eS~aI~~yL~~~~~ 79 (222)
|+ ++||+.+.|+ +.++.++|++.|++|+.+. .+|. |+||+|++ +|.+|+||.||++||++.++
T Consensus 1 ~~--~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~------------~~p~-GkVPvLv~ddG~~L~ES~AIl~YLa~~~p 64 (722)
T PLN02907 1 ME--AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP------------SLKS-GSAPTLLFSSGEKLTGTNVLLRYIARSAS 64 (722)
T ss_pred Ce--EEEEECCCCC-hHHHHHHHHHcCCCcEEee------------cCCC-CCCcEEEECCCCEEECHHHHHHHHHHhCC
Confidence 67 8999988885 7789999999999999874 2687 89999995 88999999999999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHH
Q 041211 80 NNPILPQDPYQRAMVRFWAKFIDEKILATGWKANFGEGKEREVAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVANLI 159 (222)
Q Consensus 80 ~~~l~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~ 159 (222)
+..|+|.++.+++++++|+.+..... . ...+.+.++.||.+|++++||+|+++|+|||++++.
T Consensus 65 ~~~L~p~d~~erAqV~qWL~~~~~~~-~----------------~~~l~~~L~~LE~~L~~rtYLvGd~lTLADIaL~~~ 127 (722)
T PLN02907 65 LPGFYGQDAFESSQVDEWLDYAPTFS-S----------------GSEFENACEYVDGYLASRTFLVGYSLTIADIAIWSG 127 (722)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhhcc-c----------------HHHHHHHHHHHHHHhccCCeecCCCCCHHHHHHHHH
Confidence 77899999999999999999876421 0 124567899999999999999999999999999998
Q ss_pred HhhhHhhhhhhCcCCCCcccchhHHHHHHHHHhccc
Q 041211 160 AFWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDL 195 (222)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~ 195 (222)
+..... ...+... ...+|+|.+|++++.++|+
T Consensus 128 L~~~~~--~~~~~~~--~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 128 LAGSGQ--RWESLRK--SKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred HHhhhh--hhhcccc--cccCHHHHHHHHHHHhCCC
Confidence 755411 1112222 3689999999999999999
No 23
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.91 E-value=8.2e-23 Score=149.36 Aligned_cols=194 Identities=20% Similarity=0.260 Sum_probs=156.6
Q ss_pred cCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHhhcCCCCCCCCCHHH
Q 041211 11 WVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDETWKNNPILPQDPYQ 90 (222)
Q Consensus 11 ~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~l~p~~~~~ 90 (222)
-.||||+++.+.|.++|++|....|++..+++||.++.|. |++|+|..|+..++||..|.++|+++++.+++--.++.+
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~-~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~~E 97 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPG-GKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTLAPPE 97 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCC-CCCCeEEeCCceeccHHHHHHHHHHhcCCCCCcccCCHH
Confidence 4799999999999999999999999999999999999998 899999999999999999999999999765432222323
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhcCCch-hHHHHHHHHHHHHHHHHHhcCC---CccccCCCCCHHHHHHHHHHhhhHh-
Q 041211 91 RAMVRFWAKFIDEKILATGWKANFGEGK-EREVAIEEFAEQMKFLENELNG---KDFFEGETIGFLDIVANLIAFWFPV- 165 (222)
Q Consensus 91 ~a~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~l~~le~~L~~---~~~l~G~~~t~aD~~l~~~l~~~~~- 165 (222)
.+. +...++..+......+.+ .-+.....+.+.|..|+++|+. ++||.|+++|.|||.+.+-|+.+..
T Consensus 98 ~as-------ag~diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~i~va 170 (221)
T KOG1422|consen 98 SAS-------AGSDIFAKFSAFIKKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLLPKLHHIKVA 170 (221)
T ss_pred HHh-------hHHHHHHHHHHHHhCchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhchhHHHHHHH
Confidence 332 222344444444333333 3344566777888999999985 8999999999999999999998864
Q ss_pred hhhhhCcCCCCcccchhHHHHHHHHHhcccccccCCChhhHHHHHHHHH
Q 041211 166 RQDALGIEAFTQEKFPVLFKWIANITKIDLVNECRPPREKHLAFVKARI 214 (222)
Q Consensus 166 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 214 (222)
.....++++ .+..+.+.+|+..+-++++|..+.+..+.+...+....
T Consensus 171 ~k~yk~~~I--P~~lt~V~rYl~~~ya~d~F~~tcp~d~ei~~~y~~~~ 217 (221)
T KOG1422|consen 171 AKHYKNFEI--PASLTGVWRYLKNAYARDEFTNTCPADQEIILAYAPVA 217 (221)
T ss_pred HHHhcCCCC--chhhhHHHHHHHHHHhHHHhhcCCchHHHHHHhhhhhh
Confidence 345557777 78999999999999999999999999998888776543
No 24
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.85 E-value=3.9e-21 Score=123.13 Aligned_cols=74 Identities=43% Similarity=0.793 Sum_probs=70.9
Q ss_pred EEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHhhcCCC
Q 041211 7 LYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDETWKNN 81 (222)
Q Consensus 7 Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~~ 81 (222)
||+++.||||+|+|++|+++||+|+.+.++..++.+++.+.||. |+||+|++||.+++||.+|++||+++++++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~-~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPK-GKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTT-SBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhccc-ccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 89999999999999999999999999999988889999999999 899999999999999999999999999864
No 25
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.83 E-value=3.9e-20 Score=117.92 Aligned_cols=73 Identities=33% Similarity=0.550 Sum_probs=69.3
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHhhc
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDETW 78 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~~ 78 (222)
|+||+.+.||+|++++++|+++|++|+.+.++..++.+++++.||. |++|+|+++|..++||.+|++||++++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPY-GTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 6899999999999999999999999999999988888999999999 899999999999999999999999864
No 26
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.82 E-value=3.7e-20 Score=117.72 Aligned_cols=70 Identities=27% Similarity=0.503 Sum_probs=65.1
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCC---CCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHH
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLS---NKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYID 75 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~ 75 (222)
++||+++.||+|++++++|+++|++|+.+.++.. ++.++|.++||. |+||+|++||.+|+||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~-g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPT-GEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999988874 467889999999 899999999999999999999985
No 27
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.82 E-value=7.4e-20 Score=116.96 Aligned_cols=74 Identities=72% Similarity=1.216 Sum_probs=68.4
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHhhc
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDETW 78 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~~ 78 (222)
|+||+++.||+|+|++++|+++|++|+.+.++...+.+++.+.||..|++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 68999999999999999999999999999998877788999999932799999999999999999999999864
No 28
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.82 E-value=3.3e-19 Score=134.98 Aligned_cols=177 Identities=23% Similarity=0.261 Sum_probs=129.0
Q ss_pred eEEEee-------cCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHhh
Q 041211 5 VKLYGT-------WVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDET 77 (222)
Q Consensus 5 ~~Ly~~-------~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~ 77 (222)
+-||.+ +.||||.|+..+|...+|||+.+.-.+. ..++. |++|.++.||..+.||..|..+|.++
T Consensus 46 VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~-------~rSr~-G~lPFIELNGe~iaDS~~I~~~L~~h 117 (281)
T KOG4244|consen 46 VYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLK-------RRSRN-GTLPFIELNGEHIADSDLIEDRLRKH 117 (281)
T ss_pred EEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccce-------eeccC-CCcceEEeCCeeccccHHHHHHHHHH
Confidence 456665 3799999999999999999998866542 22555 89999999999999999999999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHhhhhhhhhhh----------------------------hh----cC----------
Q 041211 78 WKNNPILPQDPYQRAMVRFWAKFIDEKILATGWK----------------------------AN----FG---------- 115 (222)
Q Consensus 78 ~~~~~l~p~~~~~~a~~~~~~~~~~~~l~~~~~~----------------------------~~----~~---------- 115 (222)
++-+..+ ++.++|+...+...++..+...+.. .+ +.
T Consensus 118 f~~~~~L--~~e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g~ 195 (281)
T KOG4244|consen 118 FKIPDDL--SAEQRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTGA 195 (281)
T ss_pred cCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9743323 3456666666655555332221111 11 00
Q ss_pred -CchhHHHHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHhhhHhhhhhh-CcCCCCcccchhHHHHHHHHHhc
Q 041211 116 -EGKEREVAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVANLIAFWFPVRQDAL-GIEAFTQEKFPVLFKWIANITKI 193 (222)
Q Consensus 116 -~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~-~~~~~~~~~~p~l~~~~~~~~~~ 193 (222)
..-..++..+.+.+.|..++..|++.+||+|+++|.+|+.+|..|..+.+ .... -.+++ .+++|+|.+|++|+++.
T Consensus 196 IG~f~~~Ei~ell~rDlr~i~~~Lg~KkflfGdkit~~DatvFgqLa~v~Y-P~~~~i~d~l-e~d~p~l~eYceRIr~~ 273 (281)
T KOG4244|consen 196 IGDFESAEIDELLHRDLRAISDYLGDKKFLFGDKITPADATVFGQLAQVYY-PFRSHISDLL-EGDFPNLLEYCERIRKE 273 (281)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHhCCCccccCCCCCcceeeehhhhhheec-cCCCcHHHHH-hhhchHHHHHHHHHHHH
Confidence 01123456777899999999999999999999999999999998887754 1111 11334 38899999999999873
No 29
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.81 E-value=9.1e-20 Score=117.37 Aligned_cols=74 Identities=24% Similarity=0.301 Sum_probs=66.6
Q ss_pred ceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCC-CchhHhhcCCCCCcccEEEe--CCeEeeehHHHHHHHHhhc
Q 041211 4 EVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSN-KSPELLKYNPVHKKIPVLVH--NGKPIAESLVILEYIDETW 78 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~--~g~~l~eS~aI~~yL~~~~ 78 (222)
+++||+++.||+|+|++++|.++||+|+.+.++... ..+++.+.||. |+||+|++ +|..++||.+|++||+++|
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGK-VQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCC-CcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 379999999999999999999999999999887553 46789999999 89999997 4689999999999999874
No 30
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.81 E-value=1.3e-19 Score=118.65 Aligned_cols=69 Identities=30% Similarity=0.443 Sum_probs=66.0
Q ss_pred cCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHhhcCC
Q 041211 11 WVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDETWKN 80 (222)
Q Consensus 11 ~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~ 80 (222)
..||||+|+|++|+++||+|+.+.+++.+++++|+++||. |+||+|+++|.+|+||.+|++||+++++.
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~-g~vPvL~~~~~~i~eS~~I~eYLde~~~~ 88 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPG-TQPPFLLYNGEVKTDNNKIEEFLEETLCP 88 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHHccC
Confidence 5789999999999999999999999999999999999999 89999999999999999999999999864
No 31
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.80 E-value=1.8e-19 Score=114.81 Aligned_cols=72 Identities=17% Similarity=0.112 Sum_probs=66.4
Q ss_pred ceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHh
Q 041211 4 EVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDE 76 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~ 76 (222)
+++||+++.|++|++++++|+++|++|+.+.++..+..+++.++||. |++|+|+++|.+++||.+|++||++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~ 72 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLF-GQLPCFKDGDLTLVQSNAILRHLGR 72 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCC-CCCCEEEECCEEEEcHHHHHHHHhc
Confidence 47999999999999999999999999999999875555678899999 8999999999999999999999975
No 32
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.80 E-value=3.6e-19 Score=113.78 Aligned_cols=71 Identities=38% Similarity=0.495 Sum_probs=65.8
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCC---CCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHh
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLS---NKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDE 76 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~ 76 (222)
|+||+++.||+|++++++|+++|++|+.+.++.. +..+++.+.||. |+||+|+++|..|+||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQ-HTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcC-CCCCEEEECCEEEEcHHHHHHHHhC
Confidence 6899999999999999999999999999998864 356899999999 8999999999999999999999974
No 33
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.80 E-value=4.1e-19 Score=112.54 Aligned_cols=69 Identities=38% Similarity=0.569 Sum_probs=64.8
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeC-CeEeeehHHHHHHH
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHN-GKPIAESLVILEYI 74 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~-g~~l~eS~aI~~yL 74 (222)
++||+++.||||+|++++|+++|++|+.+.++..++.+++.+.||. |+||+|+++ |..|+||.+|++|+
T Consensus 1 ~~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~-~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 1 PILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPK-GTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred CEEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCC-CCCCEEEECCCcEEecHHHHHHhh
Confidence 3799999999999999999999999999999988778899999999 899999985 89999999999996
No 34
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.79 E-value=5.1e-19 Score=113.64 Aligned_cols=72 Identities=42% Similarity=0.614 Sum_probs=66.6
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCC---CCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHhh
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLS---NKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDET 77 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~ 77 (222)
++||+++.||+|++++++|+++|++|+.+.++.. ++++++.+.||. |++|+|+++|..++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~-~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPF-GQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 7999999999999999999999999999988864 457889999999 89999999999999999999999863
No 35
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.79 E-value=9.4e-19 Score=112.41 Aligned_cols=73 Identities=38% Similarity=0.598 Sum_probs=66.8
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCC---CchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHhhc
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSN---KSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDETW 78 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~---~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~~ 78 (222)
++||+++.|++|++++++|+++|++|+.+.++... ..+++.++||. |++|+|+++|.+|+||.||++||++++
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPF-GKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 58999999999999999999999999999988653 45789999999 899999999999999999999999864
No 36
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.78 E-value=1.2e-18 Score=113.32 Aligned_cols=74 Identities=34% Similarity=0.560 Sum_probs=67.4
Q ss_pred ceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCC---CCchhHhhcCCCCCcccEEEeC---CeEeeehHHHHHHHHhh
Q 041211 4 EVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLS---NKSPELLKYNPVHKKIPVLVHN---GKPIAESLVILEYIDET 77 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~---g~~l~eS~aI~~yL~~~ 77 (222)
+++||+++. |+|++++++|+++|++|+.+.++.. +.+++|.++||. |+||+|+++ |..|+||.+|++||+++
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~g~~l~eS~aI~~yL~~~ 78 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPN-GRIPAIVDHNGTPLTVFESGAILLYLAEK 78 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcC-CCCCEEEeCCCCceEEEcHHHHHHHHHHH
Confidence 379999886 9999999999999999999988864 467899999999 899999987 89999999999999998
Q ss_pred cC
Q 041211 78 WK 79 (222)
Q Consensus 78 ~~ 79 (222)
++
T Consensus 79 ~~ 80 (81)
T cd03048 79 YD 80 (81)
T ss_pred hC
Confidence 86
No 37
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.78 E-value=3.9e-18 Score=120.19 Aligned_cols=124 Identities=42% Similarity=0.753 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHhhhHhhhh
Q 041211 89 YQRAMVRFWAKFIDEKILATGWKANFGEGKEREVAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVANLIAFWFPVRQD 168 (222)
Q Consensus 89 ~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~ 168 (222)
.+++++++|+.+.++.+.+.+...+...++..+.....+.+.++.||++|++++|++|+++|+|||++++.+.++.....
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~~~~~~~~~~ 81 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLAAKGEEREKAKEEALEALKVLEEELGGKPFFGGDTIGYVDIALGSFLGWFRAYEE 81 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 47899999999999888887766555444555667888999999999999989999999999999999999988754323
Q ss_pred hhCcCCCCcccchhHHHHHHHHHhcccccccCCChhhHHHHHHH
Q 041211 169 ALGIEAFTQEKFPVLFKWIANITKIDLVNECRPPREKHLAFVKA 212 (222)
Q Consensus 169 ~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 212 (222)
..+.+.++...+|++.+|+++|.++|+++++....+...++.++
T Consensus 82 ~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~ 125 (126)
T cd03185 82 VGGVKLLDEEKTPLLAAWAERFLELEAVKEVLPDRDKLVEFAKA 125 (126)
T ss_pred HcCccccCcccCchHHHHHHHHHhccHHHHhCCCHHHHHHHHHh
Confidence 22433222367999999999999999999999998887776553
No 38
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.78 E-value=1.6e-18 Score=114.65 Aligned_cols=72 Identities=36% Similarity=0.631 Sum_probs=67.1
Q ss_pred CceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeC-CeEeeehHHHHHHHH
Q 041211 3 EEVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHN-GKPIAESLVILEYID 75 (222)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~-g~~l~eS~aI~~yL~ 75 (222)
.+++||+++.||+|++++++|+++|++|+.+.++.....+++.+.||. |++|+|+++ |.+|+||.+|++||+
T Consensus 17 ~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~-~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 17 GIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQ-GKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred CcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCC-CCcCEEEECCCCEEECHHHHHHhhC
Confidence 579999999999999999999999999999999887767789999999 899999986 899999999999985
No 39
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.77 E-value=2e-18 Score=109.99 Aligned_cols=70 Identities=40% Similarity=0.696 Sum_probs=64.9
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCC---CCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHH
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLS---NKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYID 75 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~ 75 (222)
++||+++.||+|++++++|+++|++|+.+.++.. ++.+++.+.||. |++|+|+++|.+++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPN-GEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999998864 367889999999 899999999999999999999984
No 40
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.77 E-value=2e-18 Score=109.94 Aligned_cols=70 Identities=27% Similarity=0.446 Sum_probs=64.3
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCC---CCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHH
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLS---NKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYID 75 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~ 75 (222)
++||+++.||++++++++|+++|++|+.+.++.. ++.+++.+.||. |++|+|+++|..|+||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~-~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPN-GRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCC-CCCCEEEECCEEEECHHHHHHHhC
Confidence 5899999999999999999999999999988753 356889999999 899999999999999999999984
No 41
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.77 E-value=1.7e-18 Score=110.07 Aligned_cols=71 Identities=27% Similarity=0.319 Sum_probs=64.1
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCC-CchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHh
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSN-KSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDE 76 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~ 76 (222)
++||+++.|++|+++|++|+++|++|+.+.++... ..+++.+.||. |++|+|+++|.+|+||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPF-GQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcC-CCCCEEEECCEEEEecHHHHHHhhC
Confidence 58999999999999999999999999999988753 33458899999 8999999999999999999999974
No 42
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.76 E-value=2.5e-18 Score=110.07 Aligned_cols=70 Identities=33% Similarity=0.411 Sum_probs=65.3
Q ss_pred EEEeecCCcHHHHHHHHHHHcCCCceEeecCCC--CCchhHhhcCCCCCcccEEEe-CCeEeeehHHHHHHHHh
Q 041211 6 KLYGTWVSPFSRRIELALKLKGVPFEYMEEDLS--NKSPELLKYNPVHKKIPVLVH-NGKPIAESLVILEYIDE 76 (222)
Q Consensus 6 ~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~--~~~~~~~~~~p~~g~vP~L~~-~g~~l~eS~aI~~yL~~ 76 (222)
|||+++.||+|++++++|+++|++|+.+.++.. +++++|.++||. |++|+|++ +|.+|+||.||++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~-~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPL-GKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCC-CCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 799999999999999999999999999999875 567899999999 89999997 58999999999999975
No 43
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.76 E-value=2.4e-18 Score=109.59 Aligned_cols=70 Identities=34% Similarity=0.496 Sum_probs=65.3
Q ss_pred eEEEeecCCcHHHHHHHHHHH--cCCCceEeecCCCCCchhHhhcCCCCCcccEEEe-CCeEeeehHHHHHHHH
Q 041211 5 VKLYGTWVSPFSRRIELALKL--KGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVH-NGKPIAESLVILEYID 75 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~--~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~-~g~~l~eS~aI~~yL~ 75 (222)
++||+++.||+|+|++++|++ +|++|+.+.++..++.+++.+.||. |++|+|++ +|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPL-GKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCC-CCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 8999999999887778899999999 89999985 7899999999999985
No 44
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.76 E-value=3.1e-17 Score=125.05 Aligned_cols=181 Identities=15% Similarity=0.277 Sum_probs=125.7
Q ss_pred ceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHhhcCC--C
Q 041211 4 EVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDETWKN--N 81 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~--~ 81 (222)
.++||.|.+||||.|||.+|.+.||+|++++|++..+. + .+-+.. .+||+|...|+-+.||.+|+.-|...... .
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~-e-Ik~Ssy-kKVPil~~~Geqm~dSsvIIs~laTyLq~~~q 166 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQ-E-IKWSSY-KKVPILLIRGEQMVDSSVIISLLATYLQDKRQ 166 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhh-h-cccccc-ccccEEEeccceechhHHHHHHHHHHhccCCC
Confidence 58999999999999999999999999999999986421 1 122444 89999999887899999999877432210 0
Q ss_pred ------CCCC-----------------------------CCHHHHHHHHHHHHHHhhhhhhhhhhhhcC-----------
Q 041211 82 ------PILP-----------------------------QDPYQRAMVRFWAKFIDEKILATGWKANFG----------- 115 (222)
Q Consensus 82 ------~l~p-----------------------------~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~----------- 115 (222)
.++| .+...+..-+.|..|+++.+...+.+-.+.
T Consensus 167 ~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFew 246 (370)
T KOG3029|consen 167 DLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFEW 246 (370)
T ss_pred CHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHHH
Confidence 0122 111223355678888887665554432220
Q ss_pred -----------------------------------CchhHHHHHHHHHHHHHHHHHhc-CCCccccCCCCCHHHHHHHHH
Q 041211 116 -----------------------------------EGKEREVAIEEFAEQMKFLENEL-NGKDFFEGETIGFLDIVANLI 159 (222)
Q Consensus 116 -----------------------------------~~~~~~~~~~~~~~~l~~le~~L-~~~~~l~G~~~t~aD~~l~~~ 159 (222)
...+..+.++.+.+.++.+-..| ++++|+.|++|++||+.+|.+
T Consensus 247 f~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgknr~flGG~kPnLaDLsvfGv 326 (370)
T KOG3029|consen 247 FSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKNRPFLGGKKPNLADLSVFGV 326 (370)
T ss_pred HHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCCCCccCCCCCchhhhhhhhh
Confidence 00011223555666666666677 468999999999999999999
Q ss_pred HhhhHhhhhhhCcCCCCcccchhHHHHHHHHHh
Q 041211 160 AFWFPVRQDALGIEAFTQEKFPVLFKWIANITK 192 (222)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 192 (222)
|.-+..+..+ .+. -...+|.+|+.+|+.
T Consensus 327 l~sm~gc~af--kd~---~q~t~I~eW~~rmea 354 (370)
T KOG3029|consen 327 LRSMEGCQAF--KDC---LQNTSIGEWYYRMEA 354 (370)
T ss_pred hhHhhhhhHH--HHH---HhcchHHHHHHHHHH
Confidence 9988765433 222 235789999999986
No 45
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.76 E-value=5.1e-18 Score=108.94 Aligned_cols=73 Identities=34% Similarity=0.490 Sum_probs=66.4
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCC---CCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHhhcC
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLS---NKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDETWK 79 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~~~ 79 (222)
++||+++. +++++++++|+++|++|+.+.++.. ++.+++.+.||. |++|+|+++|..|+||.+|++||+++++
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPL-GKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 58999886 5899999999999999999998864 567899999999 8999999999999999999999998874
No 46
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.76 E-value=4e-18 Score=108.01 Aligned_cols=70 Identities=30% Similarity=0.463 Sum_probs=61.6
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeC-CeEeeehHHHHHHHHh
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHN-GKPIAESLVILEYIDE 76 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~-g~~l~eS~aI~~yL~~ 76 (222)
|+||++..||+|+|+|++|.++|++|+.+.++... .....+.+|. |++|+|+++ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~-~~~~~~~~~~-~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD-EATPIRMIGA-KQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc-hHHHHHhcCC-CccCEEEeCCCeEeehHHHHHHHHhC
Confidence 68999999999999999999999999999887543 2344678998 899999985 8999999999999974
No 47
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.75 E-value=4.5e-18 Score=108.58 Aligned_cols=70 Identities=37% Similarity=0.645 Sum_probs=63.8
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCC---CCchhHhhcCCCCCcccEEEe-CCeEeeehHHHHHHHH
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLS---NKSPELLKYNPVHKKIPVLVH-NGKPIAESLVILEYID 75 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~-~g~~l~eS~aI~~yL~ 75 (222)
|+||+++.||+|+|++++|+++|++|+.+.++.. ...+++.+.||. |++|+|++ +|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPA-GTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCC-CCCCEEEeCCCCEEecHHHHHHHhC
Confidence 5899999999999999999999999999988864 356789999999 89999995 7889999999999985
No 48
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.75 E-value=9.5e-18 Score=107.99 Aligned_cols=73 Identities=34% Similarity=0.534 Sum_probs=65.6
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCC---CCchhHhhcCCCCCcccEEEeC-CeEeeehHHHHHHHHhhcC
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLS---NKSPELLKYNPVHKKIPVLVHN-GKPIAESLVILEYIDETWK 79 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~-g~~l~eS~aI~~yL~~~~~ 79 (222)
|+||+++.+ ++++++++|+++|++|+.+.++.. ++++++.+.||. |++|+|+++ |..++||.+|++||++++|
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~-~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPK-GQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCC-CCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 589999876 589999999999999999988875 357899999999 899999986 8999999999999999875
No 49
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.75 E-value=7.5e-18 Score=107.28 Aligned_cols=70 Identities=39% Similarity=0.645 Sum_probs=65.0
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCC---CCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHH
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLS---NKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYID 75 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~ 75 (222)
|+||++..|++|++++++|+++|++|+.+.++.. ++.+++.+.||. |++|+|+++|..++||.||++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQ-GLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999998864 467889999999 899999999999999999999985
No 50
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.74 E-value=1.1e-17 Score=107.62 Aligned_cols=72 Identities=26% Similarity=0.534 Sum_probs=62.9
Q ss_pred ceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeC----CeEeeehHHHHHHHHhhc
Q 041211 4 EVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHN----GKPIAESLVILEYIDETW 78 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~----g~~l~eS~aI~~yL~~~~ 78 (222)
+++||+++.||+|+|++++|.++||+|+.+.++... .++ ...||. ++||+|+++ |.+|+||.+|++||+++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~-~~~-~~~~~~-~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS-RKE-IKWSSY-KKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh-HHH-HHHhCC-CccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 589999999999999999999999999999887643 233 356998 899999965 789999999999999874
No 51
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.72 E-value=3.4e-17 Score=105.78 Aligned_cols=72 Identities=21% Similarity=0.212 Sum_probs=62.3
Q ss_pred ceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhc-----CCCCCcccEEEeCCeEeeehHHHHHHHHhhc
Q 041211 4 EVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKY-----NPVHKKIPVLVHNGKPIAESLVILEYIDETW 78 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~-----~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~~ 78 (222)
+++||+++.|+.+++++++|+++|++|+.+.++.. +++.+. .|+ |+||+|++||.+|+||.||++||++++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~---~~~~~~~~~~~~~~-g~vP~L~~~g~~l~ES~AI~~YL~~~~ 76 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA---EDLEKLKKDGSLMF-QQVPMVEIDGMKLVQTRAILNYIAGKY 76 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH---HHHHhhccccCCCC-CCCCEEEECCEEEeeHHHHHHHHHHHc
Confidence 46899999999999999999999999999988753 233333 357 899999999999999999999999987
Q ss_pred C
Q 041211 79 K 79 (222)
Q Consensus 79 ~ 79 (222)
+
T Consensus 77 ~ 77 (79)
T cd03077 77 N 77 (79)
T ss_pred C
Confidence 6
No 52
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.72 E-value=2.8e-17 Score=106.84 Aligned_cols=73 Identities=19% Similarity=0.254 Sum_probs=62.2
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCC----CchhHh-hc----CCCCCcccEEEeCCeEeeehHHHHHHHH
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSN----KSPELL-KY----NPVHKKIPVLVHNGKPIAESLVILEYID 75 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~----~~~~~~-~~----~p~~g~vP~L~~~g~~l~eS~aI~~yL~ 75 (222)
.+|||+..++.|++++++|+++||+|+.+.+++.. ..+++. .. +|+ |+||+|++||.+|+||.||++||+
T Consensus 1 ~~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~-g~vP~L~~~g~~l~ES~AIl~YLa 79 (82)
T cd03075 1 PTLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDF-PNLPYYIDGDVKLTQSNAILRYIA 79 (82)
T ss_pred CEEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcC-CCCCEEEECCEEEeehHHHHHHHh
Confidence 37999999999999999999999999999998753 124443 22 398 899999999999999999999998
Q ss_pred hhc
Q 041211 76 ETW 78 (222)
Q Consensus 76 ~~~ 78 (222)
+++
T Consensus 80 ~~~ 82 (82)
T cd03075 80 RKH 82 (82)
T ss_pred hcC
Confidence 764
No 53
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.72 E-value=4e-17 Score=104.45 Aligned_cols=67 Identities=33% Similarity=0.610 Sum_probs=60.8
Q ss_pred eEEEeec-------CCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHhh
Q 041211 5 VKLYGTW-------VSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDET 77 (222)
Q Consensus 5 ~~Ly~~~-------~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~ 77 (222)
++||++. .||+|+|++++|+++|++|+.+.++.. +.||. |++|+|+++|..|+||.+|++||+++
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~-------~~~p~-g~vPvl~~~g~~l~eS~~I~~yL~~~ 73 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA-------KRSPK-GKLPFIELNGEKIADSELIIDHLEEK 73 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc-------cCCCC-CCCCEEEECCEEEcCHHHHHHHHHHH
Confidence 6899987 689999999999999999999887642 57998 89999999999999999999999998
Q ss_pred cC
Q 041211 78 WK 79 (222)
Q Consensus 78 ~~ 79 (222)
|+
T Consensus 74 ~~ 75 (75)
T cd03080 74 YG 75 (75)
T ss_pred cC
Confidence 74
No 54
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.71 E-value=1.1e-16 Score=115.14 Aligned_cols=125 Identities=16% Similarity=0.229 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhc-CCchhHHHHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHhhhHhhh
Q 041211 89 YQRAMVRFWAKFIDEKILATGWKANF-GEGKEREVAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVANLIAFWFPVRQ 167 (222)
Q Consensus 89 ~~~a~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~ 167 (222)
..++++++|++|....+.+.+..... .+++..+.....+.+.|+.||++|++++|++|+++|+|||++++.+.++....
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~~~yl~Gd~~TlADi~l~~~l~~~~~~~ 82 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVYKAGFATTQEAYDEAVDELFEALDRLEELLSDRRYLLGDRLTEADIRLFTTLIRFDAVY 82 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHccCCeeeCCCccHHHHHHHHHHHHHHHHh
Confidence 46888999999999988877666543 34556677888999999999999998999999999999999999887653211
Q ss_pred -hhh--CcCCCCcccchhHHHHHHHHHhcccccccCCChhhHHHHHHHHHH
Q 041211 168 -DAL--GIEAFTQEKFPVLFKWIANITKIDLVNECRPPREKHLAFVKARIE 215 (222)
Q Consensus 168 -~~~--~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 215 (222)
... +... ...+|+|.+|+++|.++|+++++....+.+.++++.++.
T Consensus 83 ~~~~~~~~~~--~~~~P~L~~w~~r~~~~P~~k~~~~~~~~~~~~~~~~~~ 131 (142)
T cd03190 83 VQHFKCNLKR--IRDYPNLWNYLRRLYQNPGVAETTNFDHIKQHYYGSHFP 131 (142)
T ss_pred hhhcccccch--hhhCchHHHHHHHHhcCchHhhhcCHHHHHHHHHhhcCC
Confidence 111 1111 257999999999999999999999988888998888755
No 55
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.71 E-value=3.2e-17 Score=103.36 Aligned_cols=65 Identities=49% Similarity=0.839 Sum_probs=56.4
Q ss_pred CCcHHHHHHHHHHHcCCCceEeecCC----CCCchhHhhcCCCCCcccEEEe-CCeEeeehHHHHHHHHhh
Q 041211 12 VSPFSRRIELALKLKGVPFEYMEEDL----SNKSPELLKYNPVHKKIPVLVH-NGKPIAESLVILEYIDET 77 (222)
Q Consensus 12 ~sp~~~~v~~~L~~~gi~y~~~~v~~----~~~~~~~~~~~p~~g~vP~L~~-~g~~l~eS~aI~~yL~~~ 77 (222)
+|||++|++++|+++|++|+...+.. ..++++|.+.||. |+||+|++ +|.++.||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~-~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPR-GKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT--SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcC-eEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 59999999999999999999988743 2456899999999 89999998 789999999999999863
No 56
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.70 E-value=1.7e-16 Score=108.68 Aligned_cols=105 Identities=23% Similarity=0.278 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHhhhHhhhh
Q 041211 89 YQRAMVRFWAKFIDEKILATGWKANFGEGKEREVAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVANLIAFWFPVRQD 168 (222)
Q Consensus 89 ~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~ 168 (222)
.+|++++.|+.++++.+.+.+...+.+.++..+.....+.+.|+.||++|++++|++|+++|+|||++++.+.+..
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~---- 77 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEKGRKKEAEKARKELRESLLALAPVFAHKPYFMSEEFSLVDCALAPLLWRLP---- 77 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcHHHHHHHHHHHHHH----
Confidence 4799999999999998888776555444555667788899999999999999999999999999999999875543
Q ss_pred hhCcCCCCcccchhHHHHHHHHHhccccccc
Q 041211 169 ALGIEAFTQEKFPVLFKWIANITKIDLVNEC 199 (222)
Q Consensus 169 ~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~ 199 (222)
..+.++ ...+|++.+|++++.+||+++++
T Consensus 78 ~~~~~~--~~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 78 ALGIEL--PKQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred HcCCCC--cccchHHHHHHHHHHCCHHHHHh
Confidence 224444 25799999999999999999875
No 57
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.70 E-value=2.2e-16 Score=109.43 Aligned_cols=109 Identities=16% Similarity=0.151 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhhhhhhcC---CchhHHHHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHhhh
Q 041211 87 DPYQRAMVRFWAKFIDEKILATGWKANFG---EGKEREVAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVANLIAFWF 163 (222)
Q Consensus 87 ~~~~~a~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~ 163 (222)
++.+++.+++|+.+.+..+.+.+...++. +.+..+.....+.+.++.||++|++++|++|+++|+|||++++.+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~le~~L~~~~yl~Gd~~tlADi~l~~~l~~~ 82 (115)
T cd03196 3 DPAALKEMLALIAENDNEFKHHLDRYKYADRYPEESEEEYRQQAEAFLKDLEARLQQHSYLLGDKPSLADWAIFPFVRQF 82 (115)
T ss_pred chHHHHHHHHHHHHcchhhHHHHHhccchhhcCcccHHHHHHHHHHHHHHHHHHHccCCccCCCCccHHHHHHHHHHHHH
Confidence 67899999999999999988888776653 222466778899999999999999999999999999999999987665
Q ss_pred HhhhhhhCcCCCCcccchhHHHHHHHHHhccccccc
Q 041211 164 PVRQDALGIEAFTQEKFPVLFKWIANITKIDLVNEC 199 (222)
Q Consensus 164 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~ 199 (222)
... ...+. +..++|+|.+|++++.++|+++++
T Consensus 83 ~~~-~~~~~---~~~~~P~L~~w~~r~~~rpa~~~~ 114 (115)
T cd03196 83 AHV-DPKWF---DQSPYPRLRRWLNGFLASPLFSKI 114 (115)
T ss_pred HHh-hhccc---CcccCHHHHHHHHHHHcChHHHhh
Confidence 321 11111 137899999999999999999975
No 58
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.69 E-value=3e-16 Score=110.36 Aligned_cols=119 Identities=24% Similarity=0.355 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhcCC--CccccCCCCCHHHHHHHHHHhhhHhhh
Q 041211 90 QRAMVRFWAKFIDEKILATGWKANFGEGKEREVAIEEFAEQMKFLENELNG--KDFFEGETIGFLDIVANLIAFWFPVRQ 167 (222)
Q Consensus 90 ~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aD~~l~~~l~~~~~~~ 167 (222)
+||+.+.|+.+++ .+.+.+...+.. ++..+...+.+.+.|+.+|+.|++ ++|++|+++|+||+++++.+.++....
T Consensus 2 ~ra~~r~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~~~~~~~~ 79 (124)
T cd03184 2 EKAQQKLLLERFS-KVVSAFYKLLGA-PSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWFERLEALK 79 (124)
T ss_pred hHHHHHHHHHHHh-hhhHHHHHHHhc-cccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHHHHHHHHH
Confidence 5889999999997 456666665555 566778888999999999999975 899999999999999999887775432
Q ss_pred hhhCcCCCCcccchhHHHHHHHHHhcccccccCCChhhHHHHHH
Q 041211 168 DALGIEAFTQEKFPVLFKWIANITKIDLVNECRPPREKHLAFVK 211 (222)
Q Consensus 168 ~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 211 (222)
...+.. +..+.+|+|.+|+++|.++|++++++.+.+++.++++
T Consensus 80 ~~~~~~-~~~~~~p~l~~w~~r~~~~p~v~~~~~~~~~~~~~~~ 122 (124)
T cd03184 80 LLLGYE-FPLDRFPKLKKWMDAMKEDPAVQAFYTDTEIHAEFLK 122 (124)
T ss_pred hhcccc-CCcccChHHHHHHHHhccChHHHHHhCCHHHHHHHHh
Confidence 221211 1237899999999999999999999999998887765
No 59
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.69 E-value=1.2e-16 Score=102.38 Aligned_cols=72 Identities=38% Similarity=0.486 Sum_probs=60.6
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCC---CCchhHhhcCCCCCcccEEEeC-CeEeeehHHHHHHHHh
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLS---NKSPELLKYNPVHKKIPVLVHN-GKPIAESLVILEYIDE 76 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~-g~~l~eS~aI~~yL~~ 76 (222)
|+|++++..++++++|++|+++|++|+.+.++.. +++++|.+.||..|++|+|+++ |.+|+||.||++||++
T Consensus 1 ~~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 1 MTLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 4566666666999999999999999999999874 3459999999962599999998 9999999999999985
No 60
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.68 E-value=1.5e-16 Score=104.12 Aligned_cols=67 Identities=28% Similarity=0.485 Sum_probs=58.8
Q ss_pred cCCcHHHHHHHHHHHcCCCceEeecCCCCC---chhHhhcCCCCCcccEEEeC-CeEeeehHHHHHHHHhhcC
Q 041211 11 WVSPFSRRIELALKLKGVPFEYMEEDLSNK---SPELLKYNPVHKKIPVLVHN-GKPIAESLVILEYIDETWK 79 (222)
Q Consensus 11 ~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~---~~~~~~~~p~~g~vP~L~~~-g~~l~eS~aI~~yL~~~~~ 79 (222)
+.||+|+|++++|.++|++|+.+.++.... .+++ +.||. |++|+|+++ |..++||.+|++||+++++
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~-~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGF-YTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCC-ceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 689999999999999999999998886532 2344 78998 899999998 8999999999999999875
No 61
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=7.4e-16 Score=117.41 Aligned_cols=205 Identities=18% Similarity=0.230 Sum_probs=149.6
Q ss_pred CceEEEeecCCcHHHHHHHHHHHcCCC--ceEeecCCC--CC----------------------chhHhhcCCCC---Cc
Q 041211 3 EEVKLYGTWVSPFSRRIELALKLKGVP--FEYMEEDLS--NK----------------------SPELLKYNPVH---KK 53 (222)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~L~~~gi~--y~~~~v~~~--~~----------------------~~~~~~~~p~~---g~ 53 (222)
.++.||..-.|||+.|..++=+.+|++ .....+.+. .+ .+-|..-.|.+ -+
T Consensus 50 GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvT 129 (324)
T COG0435 50 GRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVT 129 (324)
T ss_pred CeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCcee
Confidence 478999999999999999999999986 222222211 10 01122223311 26
Q ss_pred ccEEEeCC---eEeeehHHHHHHHHhhcC-----CCCCCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhcC-CchhHHHHH
Q 041211 54 IPVLVHNG---KPIAESLVILEYIDETWK-----NNPILPQDPYQRAMVRFWAKFIDEKILATGWKANFG-EGKEREVAI 124 (222)
Q Consensus 54 vP~L~~~g---~~l~eS~aI~~yL~~~~~-----~~~l~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~ 124 (222)
||+|-|.. .+-.||..|++-+...|. ...++|. ..+.+++.+..++-..+..-+...=++ ..++-++..
T Consensus 130 VPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~--~Lr~eId~~n~~Iy~~vNNGVYk~GFA~tq~aYeea~ 207 (324)
T COG0435 130 VPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPE--ALRTEIDELNKWIYDTVNNGVYKAGFATTQEAYEEAV 207 (324)
T ss_pred EEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCH--HHHHHHHHHHhhhcccccCceeeecccchHHHHHHHH
Confidence 89999843 445799999999987663 2357786 468899999999877666555443333 566788889
Q ss_pred HHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHhhhH-hhhhhhCcCCCCcccchhHHHHHHHHHhcccccccCCCh
Q 041211 125 EEFAEQMKFLENELNGKDFFEGETIGFLDIVANLIAFWFP-VRQDALGIEAFTQEKFPVLFKWIANITKIDLVNECRPPR 203 (222)
Q Consensus 125 ~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~-~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 203 (222)
..+-+.|+.||..|+++.|++|+++|-||+-+++.|-++. .+......++-...+||+|..|+..+-+.|++++|. ..
T Consensus 208 ~~lF~~Ld~lE~~L~~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~LYq~pg~~~T~-df 286 (324)
T COG0435 208 KKLFEALDKLEQILSERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDLYQLPGFAETV-DF 286 (324)
T ss_pred HHHHHHHHHHHHHhhcCeeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHHhcCccccccc-ch
Confidence 9999999999999999999999999999999999888774 222222333322356999999999999999999987 55
Q ss_pred hhHHHHH
Q 041211 204 EKHLAFV 210 (222)
Q Consensus 204 ~~~~~~~ 210 (222)
++++.++
T Consensus 287 ~hIK~hY 293 (324)
T COG0435 287 DHIKLHY 293 (324)
T ss_pred hHhhhhh
Confidence 6666554
No 62
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.66 E-value=3.8e-16 Score=99.33 Aligned_cols=66 Identities=36% Similarity=0.543 Sum_probs=60.1
Q ss_pred eecCCcHHHHHHHHHHHcCCCceEeecCCCC--CchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHH
Q 041211 9 GTWVSPFSRRIELALKLKGVPFEYMEEDLSN--KSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYID 75 (222)
Q Consensus 9 ~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~--~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~ 75 (222)
+...||++++++++|+++|++|+.+.++... ..++|.++||. |++|+|+++|.+|+||.+|++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPT-GKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCC-CcCCEEEECCEEEEcHHHHHHHhC
Confidence 4678999999999999999999999888753 46889999999 899999999999999999999984
No 63
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.66 E-value=8.5e-16 Score=106.22 Aligned_cols=104 Identities=18% Similarity=0.378 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhcCC---------chhHHHHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHH
Q 041211 90 QRAMVRFWAKFIDEKILATGWKANFGE---------GKEREVAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVANLIA 160 (222)
Q Consensus 90 ~~a~~~~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l 160 (222)
+++++++|+.|..+.+.+.+...+... +...+...+.+.+.++.||+.|++++|++|+++|+|||++++.+
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aDi~~~~~~ 81 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLAGGPYLLGDRFSVADAYLFVVL 81 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCcchHHHHHHHHH
Confidence 578999999999988888765444321 22245567889999999999999889999999999999999988
Q ss_pred hhhHhhhhhhCcCCCCcccchhHHHHHHHHHhcccccccC
Q 041211 161 FWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDLVNECR 200 (222)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 200 (222)
.++.. .+... +++|++.+|++++.++|++++++
T Consensus 82 ~~~~~----~~~~~---~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 82 RWAPG----VGLDL---SDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred HHHhh----cCCCh---hhChHHHHHHHHHHhCHHhHhhC
Confidence 87632 13332 57999999999999999998763
No 64
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=5e-15 Score=105.76 Aligned_cols=179 Identities=18% Similarity=0.250 Sum_probs=124.1
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEE-eCCeEeeehHHHHHHHHhhcCCCCC
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLV-HNGKPIAESLVILEYIDETWKNNPI 83 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~~l 83 (222)
|+||-|..||||-|+|++.-.+|||++.....-.+..-.. ..--. .+||+|+ ++|..+.||..|++|+++..+.+-+
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~-rmiG~-KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~l 78 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPI-RMIGQ-KQVPILQKEDGRAMPESLDIVHYVDELDGKPLL 78 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChh-hhhcc-cccceEEccccccchhhhHHHHHHHHhcCchhh
Confidence 6899999999999999999999999998876544322121 22233 6899999 5889999999999999999875433
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhhhhhhhhh-----------------cCCc-----------hhHHHHHHHHHHHHHHHH
Q 041211 84 LPQDPYQRAMVRFWAKFIDEKILATGWKAN-----------------FGEG-----------KEREVAIEEFAEQMKFLE 135 (222)
Q Consensus 84 ~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~-----------------~~~~-----------~~~~~~~~~~~~~l~~le 135 (222)
-+. -+-.++.|++-+.+.......+.+ .... ........++...+..|+
T Consensus 79 t~~---~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l~ 155 (215)
T COG2999 79 TGK---VRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRALD 155 (215)
T ss_pred ccC---cCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHHHH
Confidence 332 234556666655443322222211 1111 123455777888999999
Q ss_pred HhcCCCccccCCCCCHHHHHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHhccccc
Q 041211 136 NELNGKDFFEGETIGFLDIVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDLVN 197 (222)
Q Consensus 136 ~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~ 197 (222)
..+.+..-+-| .++.-|+.+|++|..+ -...|..+ -.++..|+.+|.+...+.
T Consensus 156 ~Li~~~s~~n~-~l~~ddi~vFplLRnl---t~v~gi~w-----ps~v~dy~~~msektqV~ 208 (215)
T COG2999 156 KLIVGPSAVNG-ELSEDDILVFPLLRNL---TLVAGIQW-----PSRVADYRDNMSEKTQVN 208 (215)
T ss_pred HHhcCcchhcc-ccchhhhhhhHHhccc---eecccCCC-----cHHHHHHHHHHHHhhCcc
Confidence 99987654444 6999999999999887 23335444 358999999998865543
No 65
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.65 E-value=8.3e-16 Score=96.59 Aligned_cols=70 Identities=46% Similarity=0.673 Sum_probs=63.2
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCch-hHhhcCCCCCcccEEEeCCeEeeehHHHHHHHH
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSP-ELLKYNPVHKKIPVLVHNGKPIAESLVILEYID 75 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~-~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~ 75 (222)
++||+++.||+|++++++|+++|++|+.+.++...... ++.+.+|. +++|+|+++|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPL-GKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 58999999999999999999999999999988764333 47889998 899999999999999999999984
No 66
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.63 E-value=3.5e-15 Score=104.97 Aligned_cols=109 Identities=16% Similarity=0.143 Sum_probs=85.7
Q ss_pred HhhhhhhhhhhhhcC-CchhHHHHHHHHHHHHHHHHHhcCC----------------CccccCCCCCHHHHHHHHHHhhh
Q 041211 101 IDEKILATGWKANFG-EGKEREVAIEEFAEQMKFLENELNG----------------KDFFEGETIGFLDIVANLIAFWF 163 (222)
Q Consensus 101 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~----------------~~~l~G~~~t~aD~~l~~~l~~~ 163 (222)
..+.+++.+..++.+ +++..+...+.+.+.|+.||.+|++ ++|++|+++|+|||.+++.+.++
T Consensus 7 ~~~~~f~~~~~~~~~~~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~ 86 (134)
T cd03198 7 AGEDIFAKFSAYIKNSNPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIV 86 (134)
T ss_pred hHHHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 344567777666665 3455677788999999999999986 67999999999999999998877
Q ss_pred Hhh-hhhhCcCCCCcccchhHHHHHHHHHhcccccccCCChhhHHHHHH
Q 041211 164 PVR-QDALGIEAFTQEKFPVLFKWIANITKIDLVNECRPPREKHLAFVK 211 (222)
Q Consensus 164 ~~~-~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 211 (222)
... ....+..+ ...+|+|.+|++|+.+||+|++++...+++...++
T Consensus 87 ~~~~~~~~g~~i--~~~~P~L~aw~~ri~aRPsfk~t~~~~~~i~~~~~ 133 (134)
T cd03198 87 KVVAKKYRNFEI--PADLTGLWRYLKNAYQREEFTNTCPADQEIELAYK 133 (134)
T ss_pred HHHHHhhcCCCc--cccCHHHHHHHHHHHCCHHHHHHcCCHHHHHHHhc
Confidence 432 11124443 37899999999999999999999999888876653
No 67
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.7e-15 Score=112.06 Aligned_cols=206 Identities=19% Similarity=0.224 Sum_probs=145.8
Q ss_pred CceEEEeecCCcHHHHHHHHHHHcCCC----ceEeecCCCCCc------------------------------hhHhhcC
Q 041211 3 EEVKLYGTWVSPFSRRIELALKLKGVP----FEYMEEDLSNKS------------------------------PELLKYN 48 (222)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~L~~~gi~----y~~~~v~~~~~~------------------------------~~~~~~~ 48 (222)
.++-||..-.|||+.|+.+.++.+|++ +..+..-..++. +-|..-.
T Consensus 36 gryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~ 115 (319)
T KOG2903|consen 36 GRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIAS 115 (319)
T ss_pred ceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcC
Confidence 468899999999999999999999985 332221000000 1111112
Q ss_pred CCC---CcccEEEeC---CeEeeehHHHHHHHHhhc---------CCCCCCCCCHHHHHHHHHHHHHHhhhhhhhhhh-h
Q 041211 49 PVH---KKIPVLVHN---GKPIAESLVILEYIDETW---------KNNPILPQDPYQRAMVRFWAKFIDEKILATGWK-A 112 (222)
Q Consensus 49 p~~---g~vP~L~~~---g~~l~eS~aI~~yL~~~~---------~~~~l~p~~~~~~a~~~~~~~~~~~~l~~~~~~-~ 112 (222)
|.+ -+||+|=|. ..+--||..|++.+...| +.-.|+|. ..+++++.+-.|+...+...+.. .
T Consensus 116 p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~--~L~~~Ide~N~wvy~~INNGVYk~G 193 (319)
T KOG2903|consen 116 PNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPS--SLRAQIDETNSWVYDKINNGVYKCG 193 (319)
T ss_pred CCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCH--HHHHHHhhhhceecccccCceeeec
Confidence 311 268999873 456689999999998333 22347776 46899999999987766555443 2
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHhcCCCc--cccCCCCCHHHHHHHHHHhhhH-hhhhhhCcC--CCCcccchhHHHHH
Q 041211 113 NFGEGKEREVAIEEFAEQMKFLENELNGKD--FFEGETIGFLDIVANLIAFWFP-VRQDALGIE--AFTQEKFPVLFKWI 187 (222)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~~le~~L~~~~--~l~G~~~t~aD~~l~~~l~~~~-~~~~~~~~~--~~~~~~~p~l~~~~ 187 (222)
|-...+.-+...+++-+.|+.+|..|+.+. |++|+++|-||+.+++.+.++. .+......+ .+ +.+||+|..|.
T Consensus 194 FA~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~i-r~~Yp~l~~~l 272 (319)
T KOG2903|consen 194 FAEKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTI-RDEYPNLHNWL 272 (319)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhh-hccCcHHHHHH
Confidence 333566778888999999999999999865 9999999999999999887774 222222222 12 46899999999
Q ss_pred HHHHh-cccccccCCChhhHHHHHHH
Q 041211 188 ANITK-IDLVNECRPPREKHLAFVKA 212 (222)
Q Consensus 188 ~~~~~-~p~~~~~~~~~~~~~~~~~~ 212 (222)
.++-+ .|+++.|. +.+++...+-.
T Consensus 273 k~iY~~~~~~~~Tt-d~~hIk~~Y~~ 297 (319)
T KOG2903|consen 273 KNIYWNIPGFSSTT-DFNHIKLHYYR 297 (319)
T ss_pred HHHHhhccchhhcc-chhHHhhhhcc
Confidence 99998 99999877 56666665543
No 68
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.61 E-value=3.6e-15 Score=104.33 Aligned_cols=108 Identities=18% Similarity=0.153 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhc----CC----c-hhHHHHHHHHHHHHHHHHHhcC--CCccccCCCCCHHHHHHH
Q 041211 89 YQRAMVRFWAKFIDEKILATGWKANF----GE----G-KEREVAIEEFAEQMKFLENELN--GKDFFEGETIGFLDIVAN 157 (222)
Q Consensus 89 ~~~a~~~~~~~~~~~~l~~~~~~~~~----~~----~-~~~~~~~~~~~~~l~~le~~L~--~~~~l~G~~~t~aD~~l~ 157 (222)
.+++++++|+.++++.+++.+...+. .. + ...+...+.+.+.|+.||++|+ +++|++|+++|+|||+++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~ 81 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADICLV 81 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHH
Confidence 47899999999999887765322211 11 1 1223345668999999999997 457999999999999999
Q ss_pred HHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHhcccccccCCCh
Q 041211 158 LIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDLVNECRPPR 203 (222)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 203 (222)
+.+.+... .+.++ ..+|+|.+|++++.++|+++++...+
T Consensus 82 ~~~~~~~~----~~~~~---~~~p~l~~w~~~~~~~p~~~~~~~~~ 120 (121)
T cd03191 82 PQVYNARR----FGVDL---SPYPTIARINEACLELPAFQAAHPDN 120 (121)
T ss_pred HHHHHHHH----hCCCc---ccCcHHHHHHHHHHhChhHHHhCcCc
Confidence 98876532 14333 67999999999999999999987643
No 69
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.60 E-value=4.6e-15 Score=94.11 Aligned_cols=65 Identities=32% Similarity=0.535 Sum_probs=57.7
Q ss_pred eEEEeec-------CCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHhh
Q 041211 5 VKLYGTW-------VSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDET 77 (222)
Q Consensus 5 ~~Ly~~~-------~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~ 77 (222)
+.||.++ .||+|++++++|+++||+|+.+.++... .+|. |++|+|+++|..++||.+|++||+++
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-------~~p~-g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW-------RSPT-GKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc-------cCCC-cccCEEEECCEEEcCHHHHHHHHhhC
Confidence 3577766 9999999999999999999999887532 6898 89999999999999999999999874
No 70
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.60 E-value=1.9e-14 Score=99.95 Aligned_cols=104 Identities=18% Similarity=0.245 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhhhhhhcC-------------CchhHHHHHHHHHHHHHHHHHhcCCCccccCCCCCHHH
Q 041211 87 DPYQRAMVRFWAKFIDEKILATGWKANFG-------------EGKEREVAIEEFAEQMKFLENELNGKDFFEGETIGFLD 153 (222)
Q Consensus 87 ~~~~~a~~~~~~~~~~~~l~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD 153 (222)
|+.+++.+++|+.|+++.+.+.+...+.. .++..+....++.+.|+.||++|++++|++|+++|+||
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~gd~~t~aD 80 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAGSPYVAGDRFTIAD 80 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHH
Confidence 46789999999999988877765543311 12234567788999999999999988999999999999
Q ss_pred HHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHhcccc
Q 041211 154 IVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDLV 196 (222)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 196 (222)
|++++.+.++.. .+.++ ...+|+|.+|++++.++|++
T Consensus 81 i~l~~~~~~~~~----~~~~~--~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 81 ITAFVGLDFAKV----VKLRV--PEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred HHHHHHhHHHHh----cCCCC--ccccHHHHHHHHHHHhccCC
Confidence 999999987643 24444 36799999999999999974
No 71
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.59 E-value=1.5e-14 Score=100.80 Aligned_cols=103 Identities=21% Similarity=0.331 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhhhhhhhc----CC-----------chhHHHHHHHHHHHHHHHHHhcCCCccccCCCC
Q 041211 85 PQDPYQRAMVRFWAKFIDEKILATGWKANF----GE-----------GKEREVAIEEFAEQMKFLENELNGKDFFEGETI 149 (222)
Q Consensus 85 p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~----~~-----------~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~ 149 (222)
|.++.+++++++|+.+..+.+.+.+...++ .. ....+.....+.+.|+.||++|++++|++|+++
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~ 81 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAKKGYFVGDKL 81 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHccCCCCCCCCC
Confidence 467889999999999999888877543221 11 112234566799999999999999999999999
Q ss_pred CHHHHHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHhcc
Q 041211 150 GFLDIVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITKID 194 (222)
Q Consensus 150 t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p 194 (222)
|+|||++++.+.++... +.. ...+|+|.+|++++.++|
T Consensus 82 t~ADi~l~~~~~~~~~~----~~~---~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 82 TAADIMMSFPLEAALAR----GPL---LEKYPNIAAYLERIEARP 119 (119)
T ss_pred CHHHHHHHHHHHHHHHc----Ccc---cccCchHHHHHHHHhcCC
Confidence 99999999988776421 222 368999999999999986
No 72
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.59 E-value=1.5e-14 Score=100.97 Aligned_cols=115 Identities=20% Similarity=0.347 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhcC---CCccccCCCCCHHHHHHHHHHhhh
Q 041211 87 DPYQRAMVRFWAKFIDEKILATGWKANFGEGKEREVAIEEFAEQMKFLENELN---GKDFFEGETIGFLDIVANLIAFWF 163 (222)
Q Consensus 87 ~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~~l~G~~~t~aD~~l~~~l~~~ 163 (222)
|+.+|+.+++++.|... +...+...++... ..+.+.+.++.||+.|+ +++|++| ++|+|||++++.+.++
T Consensus 1 d~~~ra~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l~~~~~~~ 73 (120)
T cd03203 1 DPAKREFADELLAYTDA-FTKALYSSLIKGD-----PSAEAAAALDYIENALSKFDDGPFFLG-QFSLVDIAYVPFIERF 73 (120)
T ss_pred CHHHHHHHHHHHHHHHH-HHHHHHHHHhcCC-----chHHHHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHHHHHHHHH
Confidence 46789999999988332 2222222222111 12244667888888886 4899999 9999999999988766
Q ss_pred Hh-hhhhhCcCCCCcccchhHHHHHHHHHhcccccccCCChhhHHHHH
Q 041211 164 PV-RQDALGIEAFTQEKFPVLFKWIANITKIDLVNECRPPREKHLAFV 210 (222)
Q Consensus 164 ~~-~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~ 210 (222)
.. .....+.++ .+++|+|.+|+++|.++|+++++..+.+.+.+.+
T Consensus 74 ~~~~~~~~~~~~--~~~~P~l~~W~~~~~~rp~~~~~~~~~~~~~~~~ 119 (120)
T cd03203 74 QIFLSELFNYDI--TEGRPNLAAWIEEMNKIEAYTQTKQDPQELLDLA 119 (120)
T ss_pred HHHHHHhcCccc--cccCcHHHHHHHHHhcchHHHhHcCCHHHHHhhh
Confidence 42 112235554 3689999999999999999999999888777654
No 73
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.58 E-value=1e-14 Score=101.63 Aligned_cols=105 Identities=19% Similarity=0.369 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhc----CCchhHHHHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHhhhHh
Q 041211 90 QRAMVRFWAKFIDEKILATGWKANF----GEGKEREVAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVANLIAFWFPV 165 (222)
Q Consensus 90 ~~a~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~ 165 (222)
+++++++|+.|..+.+.+.+...+. ..+...+.....+.+.|+.||++|++++|++|+++|+||+++++.+.++..
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~aDi~l~~~~~~~~~ 81 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFGGAEPPEEKLDKLEEALDFLETFLEGSDYVAGDQLTIADLSLVATVSTLEA 81 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHccCCeeCCCCcCHHHHHHHHHHHHHHH
Confidence 5788999999988777766544332 223445667888999999999999988999999999999999999988742
Q ss_pred hhhhhCcCCCCcccchhHHHHHHHHHhcccccccC
Q 041211 166 RQDALGIEAFTQEKFPVLFKWIANITKIDLVNECR 200 (222)
Q Consensus 166 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 200 (222)
..+.+. ..+|+|.+|+++|.++|++++..
T Consensus 82 ---~~~~~~---~~~p~l~~w~~~~~~~p~~~~~~ 110 (118)
T cd03177 82 ---LLPLDL---SKYPNVRAWLERLKALPPYEEAN 110 (118)
T ss_pred ---hcCCCh---hhCchHHHHHHHHHcccchHHHH
Confidence 113332 57999999999999999999844
No 74
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.57 E-value=1.4e-14 Score=100.69 Aligned_cols=106 Identities=14% Similarity=0.250 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhh----hc----C---CchhHHHHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHH
Q 041211 90 QRAMVRFWAKFIDEKILATGWKA----NF----G---EGKEREVAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVANL 158 (222)
Q Consensus 90 ~~a~~~~~~~~~~~~l~~~~~~~----~~----~---~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~ 158 (222)
+++++.+|+.|..+.+.+.+... .+ . +.+..+.....+.+.++.||++|++++|++|+++|+|||++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 81 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSKSKYLAGDSFTLADLSHLP 81 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHcccCcccCCCCccHHHHHHHH
Confidence 57889999998877776654432 11 1 1233455678899999999999998999999999999999999
Q ss_pred HHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHhcccccccC
Q 041211 159 IAFWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDLVNECR 200 (222)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 200 (222)
.+.++... ..+ .. .+.+|++.+|++++.++|++++++
T Consensus 82 ~~~~~~~~--~~~-~~--~~~~p~l~~~~~~~~~~p~~~~~~ 118 (118)
T cd03187 82 YLQYLMAT--PFA-KL--FDSRPHVKAWWEDISARPAWKKVL 118 (118)
T ss_pred HHHHHHHc--cch-hh--hhcCchHHHHHHHHHhCHHHHhhC
Confidence 88776421 111 11 257999999999999999998763
No 75
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.57 E-value=8e-15 Score=101.24 Aligned_cols=105 Identities=20% Similarity=0.234 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhc----C---CchhHHHHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHhh
Q 041211 90 QRAMVRFWAKFIDEKILATGWKANF----G---EGKEREVAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVANLIAFW 162 (222)
Q Consensus 90 ~~a~~~~~~~~~~~~l~~~~~~~~~----~---~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~ 162 (222)
+++++++|+.|.++.+.+.+...+. . .+.........+.+.++.+|+.|++++|++|+++|+|||++++.+.+
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~ 80 (113)
T cd03178 1 ERYEVLQWLFFQMGGLGPMFGQAGHFSRYAPEKIPYAIERYTNEAKRLYGVLDKRLAGRDYLAGDEYSIADIAIFPWVRR 80 (113)
T ss_pred ChHHHHHHHHHHHccCCCcchHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHccCCcccCCCCCeeeeeHHHHHHH
Confidence 3688999999998888876543221 1 13345567788999999999999988999999999999999998887
Q ss_pred hHhhhhhhCcCCCCcccchhHHHHHHHHHhcccccccC
Q 041211 163 FPVRQDALGIEAFTQEKFPVLFKWIANITKIDLVNECR 200 (222)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 200 (222)
.... +... ...+|++.+|++++.++|++++++
T Consensus 81 ~~~~----~~~~--~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 81 LEWI----GIDD--LDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred HHhc----cccc--hhhchHHHHHHHHHhhCHHHHHhc
Confidence 6432 3332 367999999999999999999864
No 76
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.57 E-value=3.4e-14 Score=99.18 Aligned_cols=104 Identities=13% Similarity=0.170 Sum_probs=77.5
Q ss_pred hhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhcCC-CccccCCCCCHHHHHHHHHHhhhHhh-hhhhCcCCCCcccch
Q 041211 104 KILATGWKANFGEGKEREVAIEEFAEQMKFLENELNG-KDFFEGETIGFLDIVANLIAFWFPVR-QDALGIEAFTQEKFP 181 (222)
Q Consensus 104 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~aD~~l~~~l~~~~~~-~~~~~~~~~~~~~~p 181 (222)
.+++.+...+.+..+. +...+.+.+.|..||.+|++ ++|++|+++|+||+++++.+.++... ....+..+ .+.+|
T Consensus 13 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~--~~~~P 89 (121)
T cd03201 13 KIFSTFVGFLKSKDSN-DGTEQALLDELEALEDHLKENGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSV--PESLT 89 (121)
T ss_pred HHHHHHHHHHHCCcHH-HHHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCC--cccch
Confidence 3455555555443333 55667899999999999985 79999999999999999987766431 11123332 37899
Q ss_pred hHHHHHHHHHhcccccccCCChhhHHHHH
Q 041211 182 VLFKWIANITKIDLVNECRPPREKHLAFV 210 (222)
Q Consensus 182 ~l~~~~~~~~~~p~~~~~~~~~~~~~~~~ 210 (222)
+|.+|++++.+||++++++...+++...+
T Consensus 90 ~l~~w~~rl~~rps~~~t~~~~~~~~~~~ 118 (121)
T cd03201 90 SVKSYMKALFSRESFVKTKAEKEDVIAGW 118 (121)
T ss_pred HHHHHHHHHHCCchhhhcCCCHHHHHHHh
Confidence 99999999999999999998877765443
No 77
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.56 E-value=3.1e-14 Score=99.60 Aligned_cols=109 Identities=11% Similarity=0.201 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhcCC--chhHHHHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHhhhHhhh
Q 041211 90 QRAMVRFWAKFIDEKILATGWKANFGE--GKEREVAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVANLIAFWFPVRQ 167 (222)
Q Consensus 90 ~~a~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~ 167 (222)
+++.++++++.+++ +...+...++.. +...+.....+.+.++.||++|++++|++|+++|+||+++++.+.++...
T Consensus 2 e~~~id~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aDi~l~~~~~~~~~~- 79 (121)
T cd03209 2 ERIRVDMLEQQAMD-LRMGLARICYSPDFEKLKPDYLAKLPDKLKLFSDFLGDRPWFAGDKITYVDFLLYEALDQHRIF- 79 (121)
T ss_pred chHHHHHHHHHHHH-HHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhCCCCCcCCCCccHHHHHHHHHHHHHHHh-
Confidence 46788888887776 344444443332 23344567778899999999999889999999999999999998887421
Q ss_pred hhhCcCCCCcccchhHHHHHHHHHhcccccccCCChhh
Q 041211 168 DALGIEAFTQEKFPVLFKWIANITKIDLVNECRPPREK 205 (222)
Q Consensus 168 ~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~ 205 (222)
+... ...+|+|.+|++|+.++|++++++.+++.
T Consensus 80 ---~~~~--~~~~P~l~~~~~rv~~~p~vk~~~~~~~~ 112 (121)
T cd03209 80 ---EPDC--LDAFPNLKDFLERFEALPKISAYMKSDRF 112 (121)
T ss_pred ---Cccc--cccChHHHHHHHHHHHCHHHHHHHhcccC
Confidence 2222 26799999999999999999999877653
No 78
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.54 E-value=9.1e-14 Score=95.37 Aligned_cols=100 Identities=19% Similarity=0.317 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhc----CC-----chhHHHHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHH
Q 041211 90 QRAMVRFWAKFIDEKILATGWKANF----GE-----GKEREVAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVANLIA 160 (222)
Q Consensus 90 ~~a~~~~~~~~~~~~l~~~~~~~~~----~~-----~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l 160 (222)
+++++++|+.+..+.+.+.+...+. .. +...+....++.+.|+.||++|++++|++|+++|+||+++++.+
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~l~g~~~t~aDi~~~~~~ 81 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAILDAQLAGRPYLAGDRFTLADIPLGCSA 81 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHHH
Confidence 4788999999998888877654322 11 12345567889999999999999899999999999999999887
Q ss_pred hhhHhhhhhhCcCCCCcccchhHHHHHHHHHhcccc
Q 041211 161 FWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDLV 196 (222)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 196 (222)
..... . +.. ..++|+|.+|++++.++|++
T Consensus 82 ~~~~~---~-~~~---~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 82 YRWFE---L-PIE---RPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHH---c-ccc---cccCchHHHHHHHHHhCCCC
Confidence 53321 1 222 37899999999999999975
No 79
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.53 E-value=3.5e-14 Score=99.52 Aligned_cols=111 Identities=19% Similarity=0.283 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhcC-------CchhHHHHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHhh
Q 041211 90 QRAMVRFWAKFIDEKILATGWKANFG-------EGKEREVAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVANLIAFW 162 (222)
Q Consensus 90 ~~a~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~ 162 (222)
+++++++|+.|+++.+.+.+...+.. +....+.....+.+.|+.||+.|++++|++|+++|+||+++++.+.+
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~siaDi~l~~~~~~ 80 (123)
T cd03181 1 EEAQVLQWVSFANTELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVLEERLLKRTYLVGERLTLADIFVAGALLL 80 (123)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHccCceeccCCccHHHHHHHHHHHH
Confidence 36789999999998888776543321 22345567888999999999999988999999999999999998887
Q ss_pred hHhhhhhhCcCCCCcccchhHHHHHHHHHhcccccccCCChh
Q 041211 163 FPVRQDALGIEAFTQEKFPVLFKWIANITKIDLVNECRPPRE 204 (222)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 204 (222)
.... ..+... ...+|++.+|++++.++|++++++.+.+
T Consensus 81 ~~~~--~~~~~~--~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 118 (123)
T cd03181 81 GFTY--VFDKEW--RAKYPNVTRWFNTVVNQPIFKAVFGEVK 118 (123)
T ss_pred HHHH--HcCHHH--HHhChHHHHHHHHHHcCHHHHHHcCCCC
Confidence 6321 112111 2579999999999999999999887654
No 80
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.52 E-value=6.3e-14 Score=98.73 Aligned_cols=108 Identities=16% Similarity=0.218 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhcCC-chhHHHHHHHHHHHHHHHHHhcCC---CccccCCCCCHHHHHHHHHHhhhHh
Q 041211 90 QRAMVRFWAKFIDEKILATGWKANFGE-GKEREVAIEEFAEQMKFLENELNG---KDFFEGETIGFLDIVANLIAFWFPV 165 (222)
Q Consensus 90 ~~a~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~l~~le~~L~~---~~~l~G~~~t~aD~~l~~~l~~~~~ 165 (222)
+++.++.+++.+.+ +...+...++.. +...+...+.+.+.|..||++|++ ++|++|+++|+||+++++.+.++..
T Consensus 3 e~~~vd~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~ 81 (126)
T cd03210 3 EAALIDMVNDGVED-LRLKYVRMIYQNYEAGKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLV 81 (126)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHH
Confidence 57778887777654 445444444432 334456677789999999999974 5899999999999999998887742
Q ss_pred hhhhhCcCCCCcccchhHHHHHHHHHhcccccccCCChh
Q 041211 166 RQDALGIEAFTQEKFPVLFKWIANITKIDLVNECRPPRE 204 (222)
Q Consensus 166 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 204 (222)
. .... ...+|+|.+|++||.++|++++++....
T Consensus 82 ~----~~~~--~~~~P~l~~~~~rv~~~p~v~~~~~~~~ 114 (126)
T cd03210 82 L----APGC--LDAFPLLKAFVERLSARPKLKAYLESDA 114 (126)
T ss_pred h----ChHh--hhcChHHHHHHHHHHhCcHHHHHHhCcC
Confidence 1 1112 2689999999999999999999876554
No 81
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.51 E-value=1.8e-13 Score=91.55 Aligned_cols=95 Identities=14% Similarity=0.219 Sum_probs=75.2
Q ss_pred HHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhcCCCccccCCCCC
Q 041211 71 LEYIDETWKNNPILPQDPYQRAMVRFWAKFIDEKILATGWKANFGEGKEREVAIEEFAEQMKFLENELNGKDFFEGETIG 150 (222)
Q Consensus 71 ~~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t 150 (222)
++||++..+ ++|++..+++.++.|++.....+.. .....+.+.++.+|++|++++|++|+++|
T Consensus 1 ~r~~~~~~~---~~~~~~~~~~~vd~~~d~~~~~l~~--------------~~~~~~~~~l~~le~~L~~~~fl~Gd~~t 63 (96)
T cd03200 1 ARFLYRLLG---PAPNAPNAATNIDSWVDTAIFQLAE--------------GSSKEKAAVLRALNSALGRSPWLVGSEFT 63 (96)
T ss_pred CchHHHHhc---ccCCCchHHHHHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHHHcCCCccCCCCCC
Confidence 478888833 9999999999999999976644421 13445567888999999999999999999
Q ss_pred HHHHHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHh
Q 041211 151 FLDIVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITK 192 (222)
Q Consensus 151 ~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 192 (222)
+|||++++.+.+. +.. ...+|+|.+|++|+.+
T Consensus 64 iADi~l~~~l~~~-------~~~---~~~~p~l~~w~~r~~~ 95 (96)
T cd03200 64 VADIVSWCALLQT-------GLA---SAAPANVQRWLKSCEN 95 (96)
T ss_pred HHHHHHHHHHHHc-------ccc---cccChHHHHHHHHHHh
Confidence 9999999887542 222 2579999999999976
No 82
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.51 E-value=1.5e-13 Score=98.18 Aligned_cols=108 Identities=17% Similarity=0.234 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhcCCchhHH----H-HHHHHHHHHHHHHHhcC--CCccccCCCCCHHHHHHHHHHhh
Q 041211 90 QRAMVRFWAKFIDEKILATGWKANFGEGKERE----V-AIEEFAEQMKFLENELN--GKDFFEGETIGFLDIVANLIAFW 162 (222)
Q Consensus 90 ~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~-~~~~~~~~l~~le~~L~--~~~~l~G~~~t~aD~~l~~~l~~ 162 (222)
+++.++++++.+.+.... +...++..++... . ....+.+.|+.||++|+ +++|++|+++|+||+++++.+.+
T Consensus 3 e~a~iD~i~~~v~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~ 81 (137)
T cd03208 3 ERALIDMYVEGTADLMEM-ILMLPFLPPEEKEAKLALIKEKAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILM 81 (137)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHH
Confidence 577888888877664433 3333333222222 1 23356799999999998 67899999999999999999988
Q ss_pred hHhhhhhhCcCCCCcccchhHHHHHHHHHhcccccccCCChh
Q 041211 163 FPVRQDALGIEAFTQEKFPVLFKWIANITKIDLVNECRPPRE 204 (222)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 204 (222)
+... .... ...+|+|.+|++|+.++|++++++....
T Consensus 82 ~~~~----~~~~--l~~~P~l~~~~~rv~~~P~vk~~~~~~~ 117 (137)
T cd03208 82 VEEL----DPSL--LSDFPLLQAFKTRISNLPTIKKFLQPGS 117 (137)
T ss_pred HHHh----chhh--hccChHHHHHHHHHHcCHHHHHHHhcCC
Confidence 7421 2222 2679999999999999999999886544
No 83
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.50 E-value=1.7e-13 Score=94.74 Aligned_cols=103 Identities=17% Similarity=0.091 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhh----cC---CchhHHHHHHHHHHHHHHHHHhcC-CCccccCCCCCHHHHHHHHHH
Q 041211 89 YQRAMVRFWAKFIDEKILATGWKAN----FG---EGKEREVAIEEFAEQMKFLENELN-GKDFFEGETIGFLDIVANLIA 160 (222)
Q Consensus 89 ~~~a~~~~~~~~~~~~l~~~~~~~~----~~---~~~~~~~~~~~~~~~l~~le~~L~-~~~~l~G~~~t~aD~~l~~~l 160 (222)
.++++++.|+.|+++.+++...... +. .+...+.....+.+.++.+|..|+ +++||+| .+|+||+++++++
T Consensus 2 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~l~G-~fSiAD~~l~~~~ 80 (114)
T cd03195 2 RQRARARQVQAWLRSDLLPIRVERSTEVVFAGAKAEPLSEAAQAAAEKLIAVAEALLPPGAANLFG-EWCIADTDLALML 80 (114)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHhCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcccC-CccHHHHHHHHHH
Confidence 4789999999999999887532111 11 112446678888999999999995 5589999 5999999999999
Q ss_pred hhhHhhhhhhCcCCCCcccchhHHHHHHHHHhcccccccCC
Q 041211 161 FWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDLVNECRP 201 (222)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 201 (222)
.|+... |.++ . |++.+|++|+.+||++++.+.
T Consensus 81 ~~~~~~----g~~l---~--p~l~ay~~r~~~rPa~~~~~~ 112 (114)
T cd03195 81 NRLVLN----GDPV---P--ERLRDYARRQWQRPSVQAWLA 112 (114)
T ss_pred HHHHHc----CCCC---C--HHHHHHHHHHHCCHHHHHHHh
Confidence 887432 6555 2 999999999999999998763
No 84
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.50 E-value=9.2e-14 Score=97.87 Aligned_cols=104 Identities=24% Similarity=0.299 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhh--------cC----CchhHHHHHHHHHHHHHHHHHh-cCCCccccCCCCCHHHHHHH
Q 041211 91 RAMVRFWAKFIDEKILATGWKAN--------FG----EGKEREVAIEEFAEQMKFLENE-LNGKDFFEGETIGFLDIVAN 157 (222)
Q Consensus 91 ~a~~~~~~~~~~~~l~~~~~~~~--------~~----~~~~~~~~~~~~~~~l~~le~~-L~~~~~l~G~~~t~aD~~l~ 157 (222)
++++++|+.|..+.+.+.+...+ +. .++..+...+.+.+.++.+|++ +++++|++|+++|+|||+++
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l~ 81 (126)
T cd03183 2 RARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLLENYFLKDKPFLAGDEISIADLSAV 81 (126)
T ss_pred cccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHH
Confidence 46678888888776665433211 11 2334456677899999999998 55578999999999999999
Q ss_pred HHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHh--cccccccC
Q 041211 158 LIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITK--IDLVNECR 200 (222)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~--~p~~~~~~ 200 (222)
+.+.+... .+.+. ..++|+|.+|++++.+ ||++++++
T Consensus 82 ~~~~~~~~----~~~~~--~~~~p~l~~w~~~~~~~~~p~~~~~~ 120 (126)
T cd03183 82 CEIMQPEA----AGYDV--FEGRPKLAAWRKRVKEAGNPLFDEAH 120 (126)
T ss_pred HHHHHHHh----cCCcc--cccCchHHHHHHHHHHhcchhHHHHH
Confidence 98766532 13333 3689999999999999 99998754
No 85
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.49 E-value=3.8e-14 Score=96.27 Aligned_cols=97 Identities=19% Similarity=0.242 Sum_probs=72.9
Q ss_pred HHHHHhhhhhhhhhhhhcC-CchhHHHHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHhhhHhhhhhhCcCCC
Q 041211 97 WAKFIDEKILATGWKANFG-EGKEREVAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVANLIAFWFPVRQDALGIEAF 175 (222)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~ 175 (222)
|+.|..+.+.+.+...+.. .++..+.....+.+.++.||++|++++|++|+++|+|||++++.+.+... . + .
T Consensus 4 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~~~~~~~~---~-~--~- 76 (103)
T cd03207 4 WLFFYAGVVEPALIAKAMGIEEPARMAGFGSYDDVLAALEQALAKGPYLLGERFTAADVLVGSPLGWGLQ---F-G--L- 76 (103)
T ss_pred eeeeccccccHHHHHHHcCCCcchhhhhhhhHHHHHHHHHHHHccCCcccCCccCHHHHHHHHHHHHHHH---c-C--C-
Confidence 4444444444443332222 23345666788999999999999999999999999999999999888742 1 2 2
Q ss_pred CcccchhHHHHHHHHHhcccccccCC
Q 041211 176 TQEKFPVLFKWIANITKIDLVNECRP 201 (222)
Q Consensus 176 ~~~~~p~l~~~~~~~~~~p~~~~~~~ 201 (222)
...+|+|.+|++++.++|+++++..
T Consensus 77 -~~~~p~l~~w~~~~~~~p~~~~~~~ 101 (103)
T cd03207 77 -LPERPAFDAYIARITDRPAFQRAAA 101 (103)
T ss_pred -CCCChHHHHHHHHHHcCHHHHHHhc
Confidence 2579999999999999999998764
No 86
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.42 E-value=7.2e-13 Score=89.47 Aligned_cols=71 Identities=24% Similarity=0.504 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHhcccc
Q 041211 119 EREVAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDLV 196 (222)
Q Consensus 119 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 196 (222)
..+....++.+.++.+|++|++++|++|+++|+||+++++.+.+... .+.. ..++|+|.+|++++.++|++
T Consensus 30 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~----~~~~---~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 30 DKETAIARAHRLLRLLEEHLAGRDWLAGDRPTIADVAVYPYVALAPE----GGVD---LEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccCCCCCCHHHHHHHHHHHHHhc----cCCC---hhhCcHHHHHHHHHHhCcCC
Confidence 44567889999999999999999999999999999999998865421 1222 36799999999999999975
No 87
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.42 E-value=9.1e-13 Score=88.00 Aligned_cols=71 Identities=25% Similarity=0.401 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHhcc
Q 041211 119 EREVAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITKID 194 (222)
Q Consensus 119 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p 194 (222)
..+.....+.+.|+.+|+.|++++|++|+++|+||+++++.+.++... +.... .+++|+|.+|++++.+||
T Consensus 25 ~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~----~~~~~-~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 25 MVEEARAKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERL----GPDFL-FEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHH----TTTTT-HTTSHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHh----CCCcc-cccCHHHHHHHHHHHcCC
Confidence 456678889999999999999999999999999999999999987543 33331 278999999999999997
No 88
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.40 E-value=1.5e-12 Score=81.94 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=49.8
Q ss_pred cCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHhh
Q 041211 11 WVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDET 77 (222)
Q Consensus 11 ~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~ 77 (222)
+.+++|.|++++|++.|+||+.+.... .+ ..+|. |+||+|++||.+|+||.+|+.||.++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~---~~---~~~P~-GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRAN---AE---FMSPS-GKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCC---cc---ccCCC-CcccEEEECCEEEeCHHHHHHHHhcC
Confidence 466789999999999999999884321 11 15787 89999999999999999999999863
No 89
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.38 E-value=2.1e-12 Score=87.82 Aligned_cols=95 Identities=22% Similarity=0.318 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhc---------CCchhHHHHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHH
Q 041211 90 QRAMVRFWAKFIDEKILATGWKANF---------GEGKEREVAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVANLIA 160 (222)
Q Consensus 90 ~~a~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l 160 (222)
+++++++|+.+..+.+.+.+..... ..++..+.....+.+.++.||+.|++++|++|+++|+|||++++.+
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~g~~~slaDi~~~~~~ 81 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLAGRDFLVGDALTIADIALAAYT 81 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCccccCCCCCHHHHHHHHHH
Confidence 5789999999988877766543221 1233456778889999999999998889999999999999999999
Q ss_pred hhhHhhhhhhCcCCCCcccchhHHHHHHHHH
Q 041211 161 FWFPVRQDALGIEAFTQEKFPVLFKWIANIT 191 (222)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~ 191 (222)
.++.. .+.+. .++|+|.+|+++++
T Consensus 82 ~~~~~----~~~~~---~~~p~l~~~~~~~~ 105 (105)
T cd03179 82 HVADE----GGFDL---ADYPAIRAWLARIE 105 (105)
T ss_pred Hhccc----cCCCh---HhCccHHHHHHhhC
Confidence 88742 13332 67999999999874
No 90
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.35 E-value=4.3e-12 Score=86.63 Aligned_cols=76 Identities=16% Similarity=0.244 Sum_probs=61.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCC----------ccccCCCCCHHHHHHHHHHhhhHhhhhhhCcCC--CCcccchhHH
Q 041211 117 GKEREVAIEEFAEQMKFLENELNGK----------DFFEGETIGFLDIVANLIAFWFPVRQDALGIEA--FTQEKFPVLF 184 (222)
Q Consensus 117 ~~~~~~~~~~~~~~l~~le~~L~~~----------~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~--~~~~~~p~l~ 184 (222)
.+..+.....+.+.|+.||++|.++ +|++|+++|+|||++++.+.++... +.+. +....+|+|.
T Consensus 24 ~~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~----~~~~~~~~~~~~P~l~ 99 (111)
T cd03204 24 VEYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFL----GLSRRYWGNGKRPNLE 99 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHc----CccccccccccChHHH
Confidence 4456778899999999999999754 4999999999999999999887432 2221 0025799999
Q ss_pred HHHHHHHhcccc
Q 041211 185 KWIANITKIDLV 196 (222)
Q Consensus 185 ~~~~~~~~~p~~ 196 (222)
+|++|+.+||+|
T Consensus 100 ~w~~rv~aRpsf 111 (111)
T cd03204 100 AYFERVLQRESF 111 (111)
T ss_pred HHHHHHHcCCCC
Confidence 999999999985
No 91
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.35 E-value=4e-12 Score=79.79 Aligned_cols=67 Identities=19% Similarity=0.311 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHH
Q 041211 119 EREVAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIAN 189 (222)
Q Consensus 119 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~ 189 (222)
..+...+.+.+.|+.||++|++++|++|+++|+||+++++.+.++..... +.++ ...+|+|.+|++|
T Consensus 3 ~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~--~~~~--~~~~p~l~~w~~r 69 (69)
T PF13410_consen 3 AVERARAQLEAALDALEDHLADGPFLFGDRPSLADIALAPFLWRLRFVGP--DFDL--LEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSBTTBSS--HHHHHHHHHHHHHHHCTH--TCCH--HTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhCc--CcCc--cccCHHHHHHHhC
Confidence 45678889999999999999999999999999999999999998865422 2233 4789999999987
No 92
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.31 E-value=1e-11 Score=80.01 Aligned_cols=72 Identities=24% Similarity=0.305 Sum_probs=63.4
Q ss_pred CceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHH
Q 041211 3 EEVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYID 75 (222)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~ 75 (222)
++++||+.++||+|.+++-+|...||+|+.+.++-.....++...+.. .++|++..||..|.++..|.+||+
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~-~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGA-TTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCC-CCcCeEEECCEEEcCHHHHHHHhC
Confidence 579999999999999999999999999999988765444556666776 699999999999999999999984
No 93
>PRK10638 glutaredoxin 3; Provisional
Probab=99.29 E-value=2.2e-11 Score=79.26 Aligned_cols=73 Identities=25% Similarity=0.356 Sum_probs=64.8
Q ss_pred CCCceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCC-CchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHH
Q 041211 1 MAEEVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSN-KSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYID 75 (222)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~ 75 (222)
|+ ++++|+.+.||||.+++.+|+++|++|+.+.++... ..+++.+.++. .++|++..+|..|.+...+..+-.
T Consensus 1 m~-~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~-~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 1 MA-NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGR-TTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred CC-cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHHHHH
Confidence 77 899999999999999999999999999999987653 45678888998 799999999999999988887644
No 94
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=3.8e-10 Score=88.19 Aligned_cols=170 Identities=19% Similarity=0.272 Sum_probs=122.7
Q ss_pred CCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEe-CCeEeeehHHHHHHHHhhcCCCCCCCC-CHH
Q 041211 12 VSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVH-NGKPIAESLVILEYIDETWKNNPILPQ-DPY 89 (222)
Q Consensus 12 ~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~-~g~~l~eS~aI~~yL~~~~~~~~l~p~-~~~ 89 (222)
.++-|..+.+++...+-|.+.+..+- +| ..|. |++|+|+. +|..+++-..|..+|.....+..+-+. ...
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN----~~---~s~s-g~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~k 87 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSN----PW---RSPS-GKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSAK 87 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecC----CC---CCCC-CCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHHH
Confidence 67889999999999996655554432 22 2666 89999996 569999999999999985433333332 256
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhc------------------------------------------C-CchhHHHHHHH
Q 041211 90 QRAMVRFWAKFIDEKILATGWKANF------------------------------------------G-EGKEREVAIEE 126 (222)
Q Consensus 90 ~~a~~~~~~~~~~~~l~~~~~~~~~------------------------------------------~-~~~~~~~~~~~ 126 (222)
+.+....|+.++++.+.+.+...++ + ..+...+....
T Consensus 88 q~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~~~ 167 (313)
T KOG3028|consen 88 QLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIYKD 167 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHHHH
Confidence 7888889999988877776654332 0 11123445666
Q ss_pred HHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHhhhHhhh-hh--hCcCCCCcccchhHHHHHHHHHh
Q 041211 127 FAEQMKFLENELNGKDFFEGETIGFLDIVANLIAFWFPVRQ-DA--LGIEAFTQEKFPVLFKWIANITK 192 (222)
Q Consensus 127 ~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~-~~--~~~~~~~~~~~p~l~~~~~~~~~ 192 (222)
..+++..|.+.|++++|++|+++|-.|+.++..+..+-... +. .-..+ ..++||.++++++.+
T Consensus 168 Aska~~~LS~~Lgs~kffFgd~psslDa~lfs~la~~~~~~Lp~~~Lq~~l---~~~~NL~~~~~~i~s 233 (313)
T KOG3028|consen 168 ASKALNLLSTLLGSKKFFFGDKPSSLDALLFSYLAILLQVALPNDSLQVHL---LAHKNLVRYVERIRS 233 (313)
T ss_pred HHHHHHHHHHHhcCceEeeCCCCchHHHHHHHHHHHHHhccCCchhHHHHH---HhcchHHHHHHHHHH
Confidence 78899999999999999999999999999999887632110 00 01112 348999999999987
No 95
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.27 E-value=3.3e-11 Score=83.31 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHhc---CCCccccCCCCCHHHHHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHhcccc
Q 041211 120 REVAIEEFAEQMKFLENEL---NGKDFFEGETIGFLDIVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDLV 196 (222)
Q Consensus 120 ~~~~~~~~~~~l~~le~~L---~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 196 (222)
.+...+.+.+.++.+|..| ++++|++|+ +|+||+++++.+.+... .+.+. .|+|.+|++|+.++|++
T Consensus 39 ~~~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~----~~~~~-----~P~l~~~~~rv~~rPsv 108 (114)
T cd03194 39 SEAVQADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRFRT----YGLPL-----SPAAQAYVDALLAHPAM 108 (114)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHH----cCCCC-----CHHHHHHHHHHHCCHHH
Confidence 4455666666666666666 467899999 99999999999888732 13332 39999999999999999
Q ss_pred cccCC
Q 041211 197 NECRP 201 (222)
Q Consensus 197 ~~~~~ 201 (222)
++++.
T Consensus 109 ~~~~~ 113 (114)
T cd03194 109 QEWIA 113 (114)
T ss_pred HHHHh
Confidence 98753
No 96
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=2.7e-10 Score=83.64 Aligned_cols=171 Identities=15% Similarity=0.271 Sum_probs=122.5
Q ss_pred CCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHhhcCCCCCCC-CCHHH
Q 041211 12 VSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDETWKNNPILP-QDPYQ 90 (222)
Q Consensus 12 ~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~l~p-~~~~~ 90 (222)
...-|..|..+|...++||..+.-+ ..+| .+|- |+||.|..|...++|-..|..+.+++.-. |.. -+..+
T Consensus 33 d~ascLAVqtfLrMcnLPf~v~~~~----Naef--mSP~-G~vPllr~g~~~~aef~pIV~fVeak~~~--l~s~lsE~q 103 (257)
T KOG3027|consen 33 DNASCLAVQTFLRMCNLPFNVRQRA----NAEF--MSPG-GKVPLLRIGKTLFAEFEPIVDFVEAKGVT--LTSWLSEDQ 103 (257)
T ss_pred cchhHHHHHHHHHHcCCCceeeecC----Cccc--cCCC-CCCceeeecchhhhhhhHHHHHHHHhccc--hhhhhhhHH
Confidence 3446899999999999999987443 1222 3786 89999999999999999999999998632 332 35667
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhh--------------c---------------------------C-CchhHHHHHHHHH
Q 041211 91 RAMVRFWAKFIDEKILATGWKAN--------------F---------------------------G-EGKEREVAIEEFA 128 (222)
Q Consensus 91 ~a~~~~~~~~~~~~l~~~~~~~~--------------~---------------------------~-~~~~~~~~~~~~~ 128 (222)
++.++..++.++..+...-.... + . +....++..++..
T Consensus 104 kadmra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~vd 183 (257)
T KOG3027|consen 104 KADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQVD 183 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHH
Confidence 88888888777653332211100 0 0 1112244577788
Q ss_pred HHHHHHHHhcCCCccccCCCCCHHHHHHHHHHhhhHhhh-hhhCc-CCCCcccchhHHHHHHHHHhc
Q 041211 129 EQMKFLENELNGKDFFEGETIGFLDIVANLIAFWFPVRQ-DALGI-EAFTQEKFPVLFKWIANITKI 193 (222)
Q Consensus 129 ~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~-~~~~~-~~~~~~~~p~l~~~~~~~~~~ 193 (222)
+.+..|+.+|+..+||.|++||-+|..+|..+..+-... +.... .. ..+|++|.+++.|+.+.
T Consensus 184 kc~~aLsa~L~~q~yf~g~~P~elDAlvFGHlytilTt~Lpn~ela~~--lkkys~LlefcrrIeq~ 248 (257)
T KOG3027|consen 184 KCCRALSAQLGSQPYFTGDQPTELDALVFGHLYTILTTRLPNMELANI--LKKYSNLLEFCRRIEQQ 248 (257)
T ss_pred HHHHHHHHHhcCCCccCCCCccHHHHHHHhhhHHhhhhcCCcHHHHHH--HHHhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999877664321 10011 11 37899999999999874
No 97
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=99.26 E-value=2.4e-11 Score=81.51 Aligned_cols=92 Identities=22% Similarity=0.403 Sum_probs=69.7
Q ss_pred HHHHHHHhhhhhhhhhhhhcC-------CchhHHHHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHhhhHhhh
Q 041211 95 RFWAKFIDEKILATGWKANFG-------EGKEREVAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVANLIAFWFPVRQ 167 (222)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~ 167 (222)
++|+.+.++.+.+.+...+.. .++..+...+.+.+.++.||++|++++|+.|+++|+||+++++.+.++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~~l~~~~~~~ 81 (100)
T cd00299 2 RAWEEWADTTLEPAARRLLLLAFVGPEVDEAALEEAREELAAALAALEKLLAGRPYLAGDRFSLADIALAPVLARLDLLG 81 (100)
T ss_pred hHHHHHHHhhcCCcccceeeeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcCHHHHHHHHHHHHHHHhh
Confidence 467777777666665554432 2345566788899999999999999999999999999999999999885432
Q ss_pred hhhCcCCCCcccchhHHHHHHHH
Q 041211 168 DALGIEAFTQEKFPVLFKWIANI 190 (222)
Q Consensus 168 ~~~~~~~~~~~~~p~l~~~~~~~ 190 (222)
...+ + .+.+|++.+|++++
T Consensus 82 ~~~~--~--~~~~p~l~~~~~~~ 100 (100)
T cd00299 82 PLLG--L--LDEYPRLAAWYDRL 100 (100)
T ss_pred hhhh--h--hccCccHHHHHHhC
Confidence 2111 2 36799999999875
No 98
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.25 E-value=1.6e-11 Score=82.74 Aligned_cols=92 Identities=22% Similarity=0.400 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhh---cCCchhHHHHHHHHHHHHHHHHHhcCCCc--cccCCCCCHHHHHHHHHHhh
Q 041211 88 PYQRAMVRFWAKFIDEKILATGWKAN---FGEGKEREVAIEEFAEQMKFLENELNGKD--FFEGETIGFLDIVANLIAFW 162 (222)
Q Consensus 88 ~~~~a~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~l~~le~~L~~~~--~l~G~~~t~aD~~l~~~l~~ 162 (222)
+..++.+++|+++.. .+.... .......+...+.+.+.++.+|++|+++. ||+|++||+||+++++.|..
T Consensus 3 ~~~~a~i~~W~~f~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~ 77 (99)
T PF14497_consen 3 PYWRALIDRWLDFSV-----AFRRRKARLEKDEASGDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLAS 77 (99)
T ss_dssp -TTHHHHHHHHH-GH-----CCHCCHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccc-----hhhhHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHH
Confidence 345677788888441 000000 01233556678889999999999998766 99999999999999998865
Q ss_pred hHhhhhhhCcCCCCcccchhHHHHHHHHHh
Q 041211 163 FPVRQDALGIEAFTQEKFPVLFKWIANITK 192 (222)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 192 (222)
+.. . ++ .+++|+|.+|++||++
T Consensus 78 ~~~-----~-~~--~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 78 LRW-----A-DF--PKDYPNLVRWYERIEE 99 (99)
T ss_dssp HHC-----C-HH--TTTCHHHHHHHHHHHT
T ss_pred Hhh-----c-cc--ccccHHHHHHHHhhcC
Confidence 531 2 22 1589999999999974
No 99
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=99.21 E-value=7.3e-11 Score=80.12 Aligned_cols=95 Identities=19% Similarity=0.205 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhcCC------chhHHHHHHHHHHHHHHHHHhcCC--CccccCCCCCHHHHHHHHHHh
Q 041211 90 QRAMVRFWAKFIDEKILATGWKANFGE------GKEREVAIEEFAEQMKFLENELNG--KDFFEGETIGFLDIVANLIAF 161 (222)
Q Consensus 90 ~~a~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aD~~l~~~l~ 161 (222)
++++++.++...++ +...+...++.. ++......+.+.+.++.||++|++ ++|++|+++|+||+++++.+.
T Consensus 2 e~~~v~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~~ 80 (104)
T cd03192 2 EAARVDALVDTIAD-LRAEFAKYFYEKDGEEKKEKKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVLD 80 (104)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHhhcCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHHH
Confidence 46778888887655 455555555532 344566788899999999999987 899999999999999999998
Q ss_pred hhHhhhhhhCcCCCCcccchhHHHHHHHH
Q 041211 162 WFPVRQDALGIEAFTQEKFPVLFKWIANI 190 (222)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~p~l~~~~~~~ 190 (222)
++... +... ....+|++.+|++++
T Consensus 81 ~~~~~----~~~~-~~~~~p~l~~~~~~~ 104 (104)
T cd03192 81 YLLYL----DPKL-LLKKYPKLKALRERV 104 (104)
T ss_pred HHHhh----Cchh-hHHhChhHHHHHHhC
Confidence 87432 2111 026799999999875
No 100
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.18 E-value=1.7e-10 Score=72.92 Aligned_cols=71 Identities=21% Similarity=0.291 Sum_probs=60.8
Q ss_pred ceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHH
Q 041211 4 EVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYID 75 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~ 75 (222)
+++||+.++||+|.+++-+|...|++|+.+.++.......+...... .++|++..||..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~-~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGA-MTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCC-CCcCeEEECCEEEeCHHHHHHHhC
Confidence 68999999999999999999999999999988755433445555565 589999999999999999999974
No 101
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.17 E-value=1.2e-10 Score=81.65 Aligned_cols=68 Identities=19% Similarity=0.352 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHh
Q 041211 120 REVAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITK 192 (222)
Q Consensus 120 ~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 192 (222)
.+.....+.+.|+.+|++|++++|+.|+++|+||+++++.+.+... ..+.++ .+.+|+|.+|++||.+
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~~---~~~~~~--~~~~p~l~~W~~r~~~ 123 (124)
T cd03202 56 REAALANFRAALEPLRATLKGQPFLGGAAPNYADYIVFGGFQWARI---VSPFPL--LEEDDPVYDWFERCLD 123 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCccCCCCCchhHHHHHHHHHHHHH---cCcccc--cccCChHHHHHHHHhc
Confidence 4567788999999999999999999999999999999999888743 213343 3689999999999976
No 102
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=99.16 E-value=8e-11 Score=77.49 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHhhhHhhhhhhCcC-C-CCcccchhHHHHHHHHH
Q 041211 122 VAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVANLIAFWFPVRQDALGIE-A-FTQEKFPVLFKWIANIT 191 (222)
Q Consensus 122 ~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~-~-~~~~~~p~l~~~~~~~~ 191 (222)
...+.+.+.++.+|++|++++|++|+++|+|||++++.+.++... .. +.. . .....+|+|.+|++|+.
T Consensus 19 ~~~~~~~~~l~~le~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~~~-~~-~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 19 EIYSLAKKDLKALSDLLGDKKFFFGDKPTSLDATVFGHLASILYA-PL-PNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHHHHHHHhc-CC-CChHHHHHHHhCcHHHHHHHHhC
Confidence 567789999999999999999999999999999999998876421 00 110 0 00257999999999973
No 103
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.11 E-value=6.2e-10 Score=70.38 Aligned_cols=59 Identities=25% Similarity=0.425 Sum_probs=50.3
Q ss_pred cCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHhh
Q 041211 11 WVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDET 77 (222)
Q Consensus 11 ~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~ 77 (222)
+.||+|.++.++|+..|+||+.+...-. ...|. |++|+|+++|..+.||..|++||.++
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~n~-------~~sp~-gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSNNP-------WRSPT-GKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecCCC-------CCCCC-CccCEEEECCEEecChHHHHHHHHHc
Confidence 4779999999999999999988754321 12677 89999999999999999999999865
No 104
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.01 E-value=1.7e-09 Score=68.55 Aligned_cols=68 Identities=19% Similarity=0.273 Sum_probs=58.4
Q ss_pred ceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCC-CchhHhhcCCCCCcccEEEeCCeEeeehHHHHH
Q 041211 4 EVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSN-KSPELLKYNPVHKKIPVLVHNGKPIAESLVILE 72 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~ 72 (222)
+++||+.+.||+|++++.+|+++||+|+.+.++... ..+++.+.++. +++|++..||..|..-....+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~-~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGS-SVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHh
Confidence 689999999999999999999999999999887542 35677888898 799999999999887666544
No 105
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.92 E-value=2.3e-09 Score=75.30 Aligned_cols=72 Identities=18% Similarity=0.177 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHhhhHhh-hhhhCcCCCCcccchhHHHHHHHHH
Q 041211 119 EREVAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVANLIAFWFPVR-QDALGIEAFTQEKFPVLFKWIANIT 191 (222)
Q Consensus 119 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~-~~~~~~~~~~~~~~p~l~~~~~~~~ 191 (222)
..++....+.+.|+.|+..|++++||+|++||.+|+++++.+.++... .+..+.... ...+|||.+|++||.
T Consensus 54 ~~ee~~~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~-~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 54 TLDQVIEEVDQCCQALSQRLGTQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEK-VKKYSNLLAFCRRIE 126 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHH-HHhCcHHHHHHHhcC
Confidence 456778888999999999999999999999999999999988776421 000011100 267999999999973
No 106
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.91 E-value=5.7e-09 Score=67.34 Aligned_cols=62 Identities=16% Similarity=0.292 Sum_probs=49.5
Q ss_pred ceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEeee
Q 041211 4 EVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIAE 66 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~e 66 (222)
+++||+.++||+|.+++-+|.++||+|+.+.++-.....+....++. .+||+++.+|..+..
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~-~~vPvv~i~~~~~~G 63 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGF-RQLPVVIAGDLSWSG 63 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-CCcCEEEECCEEEec
Confidence 59999999999999999999999999999988754322223344677 799999998865543
No 107
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.90 E-value=8.8e-09 Score=64.56 Aligned_cols=69 Identities=19% Similarity=0.255 Sum_probs=59.6
Q ss_pred ceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCC-CchhHhhcCCCCCcccEEEeCCeEeeehHHHHHH
Q 041211 4 EVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSN-KSPELLKYNPVHKKIPVLVHNGKPIAESLVILEY 73 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~y 73 (222)
++++|+.++||+|++++.+|..+|++|+.+.++... ...++.+.++. .++|++..+|..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~-~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGW-PTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEecHHHHHHh
Confidence 489999999999999999999999999988876543 34667778887 7999999999999999888764
No 108
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.86 E-value=9.1e-09 Score=64.76 Aligned_cols=63 Identities=27% Similarity=0.434 Sum_probs=53.4
Q ss_pred ceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCC-CCchhHhhcCCCCCcccEEEeCCeEeeeh
Q 041211 4 EVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLS-NKSPELLKYNPVHKKIPVLVHNGKPIAES 67 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l~eS 67 (222)
++++|+.++||+|.+++.+|.++|++|+.+.++.. ...+++.+.+|. +++|++.++|..+.+.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~-~~vP~i~~~~~~i~g~ 64 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGY-RSVPVVVIGDEHLSGF 64 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCC-cccCEEEECCEEEecC
Confidence 47999999999999999999999999999988764 234567788898 7999999988776553
No 109
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.86 E-value=1e-08 Score=64.65 Aligned_cols=70 Identities=26% Similarity=0.342 Sum_probs=56.0
Q ss_pred ceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCC-CchhHhhcCCCCCcccEEEeCCeEe--eehHHHHHHH
Q 041211 4 EVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSN-KSPELLKYNPVHKKIPVLVHNGKPI--AESLVILEYI 74 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l--~eS~aI~~yL 74 (222)
+++||+.++||+|++++.+|.+.|++|..+.++... ...++.+.++. +.+|+++.+|..+ .++.+|-++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~-~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQ-RGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCC-CcccEEEECCEEEeeCCHHHHHHHh
Confidence 489999999999999999999999999988776442 23456677887 7999999998877 5556665554
No 110
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.85 E-value=1.7e-08 Score=67.74 Aligned_cols=66 Identities=18% Similarity=0.254 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHH
Q 041211 118 KEREVAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANI 190 (222)
Q Consensus 118 ~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~ 190 (222)
+..+.....+.+.|+.+|++|++++| +++|+|||++++.+.+.... ..+... ..++|+|.+|+++|
T Consensus 33 ~~~~~~~~~~~~~l~~le~~L~~~~~---d~~TlADi~l~~~l~~~~~~--~~~~~~--~~~~p~l~~w~~rm 98 (98)
T cd03205 33 PWLERQRGKIERALDALEAELAKLPL---DPLDLADIAVACALGYLDFR--HPDLDW--RAAHPALAAWYARF 98 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhCCC---CCCCHHHHHHHHHHHHHHhH--ccCcch--hhhChHHHHHHHhC
Confidence 34567788999999999999998888 89999999999999887431 112222 36799999999985
No 111
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=98.84 E-value=3.7e-08 Score=66.15 Aligned_cols=104 Identities=16% Similarity=0.052 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhhhh-----hhcC--CchhHHHHHHHHHHHHHHHHHhcCC-CccccCCCCCHHHHHHHH
Q 041211 87 DPYQRAMVRFWAKFIDEKILATGWK-----ANFG--EGKEREVAIEEFAEQMKFLENELNG-KDFFEGETIGFLDIVANL 158 (222)
Q Consensus 87 ~~~~~a~~~~~~~~~~~~l~~~~~~-----~~~~--~~~~~~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~aD~~l~~ 158 (222)
|..+||+++++..|..+.+.+.-.. .|.+ ...-.+.....+.+.+...+..|.. ++||+|+ .|+||..+++
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~g~~~LFGe-wsIAD~dlA~ 79 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLADGGPNLFGE-WSIADADLAL 79 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT--SSTTSS---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCcccc-chHHHHHHHH
Confidence 4578999999999999887664211 2222 1223566777788889999999875 7899995 9999999999
Q ss_pred HHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHhcccccccC
Q 041211 159 IAFWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDLVNECR 200 (222)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 200 (222)
+++++..+ |.++ -+.+..|.++..++|++|+.+
T Consensus 80 ml~Rl~~~----gd~v-----P~~l~~Ya~~qwqrpsVQ~Wl 112 (117)
T PF14834_consen 80 MLNRLVTY----GDPV-----PERLADYAERQWQRPSVQRWL 112 (117)
T ss_dssp HHHHHHTT----T---------HHHHHHHHHHHT-HHHHHHH
T ss_pred HHHHHHHc----CCCC-----CHHHHHHHHHHHCCHHHHHHH
Confidence 99998543 5444 468999999999999999865
No 112
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.82 E-value=1.6e-08 Score=72.09 Aligned_cols=73 Identities=16% Similarity=0.140 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHhhhHhhhh-hhCcCCCCcccchhHHHHHHHHHh
Q 041211 119 EREVAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVANLIAFWFPVRQD-ALGIEAFTQEKFPVLFKWIANITK 192 (222)
Q Consensus 119 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~-~~~~~~~~~~~~p~l~~~~~~~~~ 192 (222)
..++......+.++.||+.|++++|++|+++|.+|+.+++.+..+..... ...... ...++|+|.+|++||.+
T Consensus 61 ~~~~~~~~a~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~-~~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 61 VEAEIYRDAKECLNLLSQRLGESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQN-HLKQCPNLCRFCDRILS 134 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHH-HHHHCcHHHHHHHHHHH
Confidence 45667788889999999999999999999999999999988766531100 000000 02679999999999985
No 113
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.80 E-value=3.2e-08 Score=62.87 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=56.9
Q ss_pred ceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCC-CCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHH
Q 041211 4 EVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLS-NKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYID 75 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~ 75 (222)
+++||+.+.||+|.+++-+|..+||+|+.+.++.. +...++........++|++..+|..+.+...+.++-.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 48999999999999999999999999999988754 1223344433330289999999999999988887643
No 114
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.80 E-value=3.4e-08 Score=70.36 Aligned_cols=64 Identities=9% Similarity=0.108 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHhc-CCCccccCCCCCHHHHHHHHHHhhhHhhhhhhCc-CCCCcccchhHHHHHHHHHh
Q 041211 123 AIEEFAEQMKFLENEL-NGKDFFEGETIGFLDIVANLIAFWFPVRQDALGI-EAFTQEKFPVLFKWIANITK 192 (222)
Q Consensus 123 ~~~~~~~~l~~le~~L-~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~-~~~~~~~~p~l~~~~~~~~~ 192 (222)
.++.+...++.+-+.+ ++++|+.|++||+||+++++.+..+.. ..+. ++ .++|+|.+|++||++
T Consensus 80 ~r~~L~~a~~~w~~~~~~~~~FlaGd~ptIADisvyg~l~s~e~---~~~~~Dl---~~~p~I~~W~eRm~~ 145 (149)
T cd03197 80 VREWLYDALNTWVAALGKDRQFHGGSKPNLADLAVYGVLRSVEG---HPAFKDM---VEETKIGEWYERMDA 145 (149)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccCCCCCCHHHHHHHHHHHHHHH---hccccch---hhCcCHHHHHHHHHH
Confidence 3444444454444444 457899999999999999999887743 2233 44 679999999999986
No 115
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=7.9e-08 Score=61.82 Aligned_cols=69 Identities=20% Similarity=0.348 Sum_probs=55.5
Q ss_pred ceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCC--CchhHh-hcCCCCCcccEEEeCCeEeeehHHHHHH
Q 041211 4 EVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSN--KSPELL-KYNPVHKKIPVLVHNGKPIAESLVILEY 73 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~--~~~~~~-~~~p~~g~vP~L~~~g~~l~eS~aI~~y 73 (222)
++++|+.++||||.++.-+|..+|++|+.+.++... ...++. ..++. .+||++..||..+.....+.++
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~-~tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQ-RTVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCC-CCcCEEEECCEEEeCcccHHHH
Confidence 589999999999999999999999999999888765 343443 45577 7999999999887755444443
No 116
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.69 E-value=9.5e-08 Score=61.37 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=58.5
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCC-CchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHh
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSN-KSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDE 76 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~ 76 (222)
+++|+.++||+|.+++-+|+.+|++|+.+.++... ...++.+.... ..+|++..+|..+.+...+..+-++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~-~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGR-RTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCC-CCcCEEEECCEEEcChHHHHHHHHc
Confidence 58999999999999999999999999999887542 23445555565 6899999999999998888776554
No 117
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.68 E-value=6.8e-08 Score=60.95 Aligned_cols=57 Identities=21% Similarity=0.384 Sum_probs=45.2
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCe
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGK 62 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~ 62 (222)
++||+.+.||+|++++-+|.++||+|+.+.++-.....+....... .+||+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~-~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGF-RQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-cccCEEEECCC
Confidence 5899999999999999999999999999988754322233333465 58999998664
No 118
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.64 E-value=1.5e-07 Score=59.88 Aligned_cols=70 Identities=13% Similarity=0.301 Sum_probs=53.5
Q ss_pred ceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCC-CchhHhhcC-CCCCcccEEEe-CCeEeeehH--HHHHHH
Q 041211 4 EVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSN-KSPELLKYN-PVHKKIPVLVH-NGKPIAESL--VILEYI 74 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~-~~~~~~~~~-p~~g~vP~L~~-~g~~l~eS~--aI~~yL 74 (222)
+++||+.++||+|++++-+|...|++|+.+.++-.. ....+.+.+ +. ..+|+++. +|..+.++. .+..+|
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~-~~vP~i~~~~g~~l~~~~~~~~~~~l 75 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGN-MTVPTVKFADGSFLTNPSAAQVKAKL 75 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCC-ceeCEEEECCCeEecCCCHHHHHHHh
Confidence 489999999999999999999999999988776543 234555666 76 79999974 677776653 344444
No 119
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.63 E-value=2.3e-07 Score=60.50 Aligned_cols=75 Identities=19% Similarity=0.309 Sum_probs=60.7
Q ss_pred ceEEEeecCCcHHHHHHHHHHH-----cCCCceEeecCCCC-CchhHhhcC--CCCCcccEEEeCCeEeeehHHHHHHHH
Q 041211 4 EVKLYGTWVSPFSRRIELALKL-----KGVPFEYMEEDLSN-KSPELLKYN--PVHKKIPVLVHNGKPIAESLVILEYID 75 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~-----~gi~y~~~~v~~~~-~~~~~~~~~--p~~g~vP~L~~~g~~l~eS~aI~~yL~ 75 (222)
.+++|+.++||+|.+++-+|.. .|++|+.+.++... ..+++.... .. .++|.+..||..+.+...|..++.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~-~~vP~ifi~g~~igg~~~~~~~~~ 80 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPV-ETVPQIFVDQKHIGGCTDFEAYVK 80 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCC-CcCCEEEECCEEEcCHHHHHHHHH
Confidence 4999999999999999999999 89999999887532 123343322 22 379999999999999999999998
Q ss_pred hhcC
Q 041211 76 ETWK 79 (222)
Q Consensus 76 ~~~~ 79 (222)
+.++
T Consensus 81 ~~~~ 84 (85)
T PRK11200 81 ENLG 84 (85)
T ss_pred Hhcc
Confidence 8765
No 120
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.62 E-value=5.3e-08 Score=59.09 Aligned_cols=59 Identities=27% Similarity=0.463 Sum_probs=49.8
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCC-CCchhHhhcCCCCCcccEEEeCCeEe
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLS-NKSPELLKYNPVHKKIPVLVHNGKPI 64 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l 64 (222)
+++|+.++||+|.+++-+|...|++|+.+.++.. ....++.+.... .++|++..||..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~-~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGV-RTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSS-SSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCC-CccCEEEECCEEC
Confidence 6899999999999999999999999999998876 345556666555 6899999999765
No 121
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.60 E-value=5.3e-07 Score=60.48 Aligned_cols=70 Identities=14% Similarity=0.138 Sum_probs=57.8
Q ss_pred CceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCch----hHhhcCCCCCcccEEEeCCeEeeehHHHHHH
Q 041211 3 EEVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSP----ELLKYNPVHKKIPVLVHNGKPIAESLVILEY 73 (222)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~----~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~y 73 (222)
+++++|+.++||||.+++-+|...|++|+.+.++...... .+...+.. .++|.+..+|..|.+...+...
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~-~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCS-PAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCC-CCcCeEEECCEEEcCHHHHHHH
Confidence 5799999999999999999999999999999998553222 34445565 6899999999999988777764
No 122
>PHA03050 glutaredoxin; Provisional
Probab=98.55 E-value=7e-07 Score=60.80 Aligned_cols=69 Identities=14% Similarity=0.212 Sum_probs=57.5
Q ss_pred CceEEEeecCCcHHHHHHHHHHHcCC---CceEeecCCCCC----chhHhhcCCCCCcccEEEeCCeEeeehHHHHH
Q 041211 3 EEVKLYGTWVSPFSRRIELALKLKGV---PFEYMEEDLSNK----SPELLKYNPVHKKIPVLVHNGKPIAESLVILE 72 (222)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~L~~~gi---~y~~~~v~~~~~----~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~ 72 (222)
+++++|+.++||||.+++-+|...|+ +|+.+.++-... ..++.+.+-. .+||.+..+|..|.....+..
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~-~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG-RTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCC-CCcCEEEECCEEEeChHHHHH
Confidence 58999999999999999999999999 788888875322 3456666666 689999999999988877766
No 123
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.53 E-value=8.2e-07 Score=57.27 Aligned_cols=72 Identities=19% Similarity=0.240 Sum_probs=60.1
Q ss_pred ceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCc----hhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHh
Q 041211 4 EVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKS----PELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDE 76 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~----~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~ 76 (222)
++++|+.++||+|.+++-+|...+++|+...++..+.. ..+.+.+.. .++|++..+|..+.++..|.++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~-~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQ-RTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHHc
Confidence 47899999999999999999999999999988876432 234455555 5899999999999999999988764
No 124
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.53 E-value=6.6e-07 Score=58.46 Aligned_cols=74 Identities=16% Similarity=0.294 Sum_probs=57.4
Q ss_pred eEEEeecCCcHHHHHHHHHHHcC-----CCceEeecCCCC-CchhHhhcCC--CCCcccEEEeCCeEeeehHHHHHHHHh
Q 041211 5 VKLYGTWVSPFSRRIELALKLKG-----VPFEYMEEDLSN-KSPELLKYNP--VHKKIPVLVHNGKPIAESLVILEYIDE 76 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~g-----i~y~~~~v~~~~-~~~~~~~~~p--~~g~vP~L~~~g~~l~eS~aI~~yL~~ 76 (222)
+++|+.++||||.+++-+|...+ ++|+.+.++... ...++....- . .+||++..||..+.++..|..++.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~-~tVP~ifi~g~~igG~~dl~~~~~~ 80 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPV-ETVPQIFVDEKHVGGCTDFEQLVKE 80 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCC-CCcCeEEECCEEecCHHHHHHHHHh
Confidence 68999999999999999999984 567777776332 1233433322 2 3799999999999999999999988
Q ss_pred hcC
Q 041211 77 TWK 79 (222)
Q Consensus 77 ~~~ 79 (222)
+++
T Consensus 81 ~~~ 83 (86)
T TIGR02183 81 NFD 83 (86)
T ss_pred ccc
Confidence 764
No 125
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.36 E-value=2.9e-06 Score=56.68 Aligned_cols=71 Identities=28% Similarity=0.331 Sum_probs=55.6
Q ss_pred CceEEEee-----cCCcHHHHHHHHHHHcCCCceEeecCCCC-CchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHH
Q 041211 3 EEVKLYGT-----WVSPFSRRIELALKLKGVPFEYMEEDLSN-KSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYI 74 (222)
Q Consensus 3 ~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~y~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL 74 (222)
+++.+|.. ++||||.+++-+|..+||+|+.+.++-.. ...++...+.. .++|.+..||..|.+...+....
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~-~tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNW-PTIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeChHHHHHHH
Confidence 57889965 78999999999999999999988775321 22334455665 58999999999998887777643
No 126
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.31 E-value=4.9e-06 Score=54.79 Aligned_cols=71 Identities=23% Similarity=0.246 Sum_probs=56.5
Q ss_pred CceEEEee-----cCCcHHHHHHHHHHHcCCCceEeecCCCC-CchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHH
Q 041211 3 EEVKLYGT-----WVSPFSRRIELALKLKGVPFEYMEEDLSN-KSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYI 74 (222)
Q Consensus 3 ~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~y~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL 74 (222)
+++++|.. ++||||.+++-+|...|++|+.+.++... ...++.+.+.. .++|.+..+|..|.+...+....
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~-~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNW-PTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeCHHHHHHHH
Confidence 57888865 69999999999999999999999886432 23344555665 58999999999999988887754
No 127
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.31 E-value=6.5e-06 Score=53.22 Aligned_cols=71 Identities=20% Similarity=0.282 Sum_probs=57.9
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCC--ceEeecCCCCCch----hHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHh
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVP--FEYMEEDLSNKSP----ELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDE 76 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~--y~~~~v~~~~~~~----~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~ 76 (222)
+++|+.++||+|.+++-+|...+++ |+.+.++...... .+.+.... .++|.+..+|..+.++..+.++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~-~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQ-RTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHHc
Confidence 5789999999999999999999999 9888887654332 24445555 5899999999999999888887654
No 128
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=97.96 E-value=5.3e-05 Score=47.49 Aligned_cols=57 Identities=25% Similarity=0.451 Sum_probs=48.0
Q ss_pred cCCcHHHHHHHHHHHcCCC---ceEeecCCCCCchhHhhcCCCCCcccEEEe-CCeEeeehHHHHHHHH
Q 041211 11 WVSPFSRRIELALKLKGVP---FEYMEEDLSNKSPELLKYNPVHKKIPVLVH-NGKPIAESLVILEYID 75 (222)
Q Consensus 11 ~~sp~~~~v~~~L~~~gi~---y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~-~g~~l~eS~aI~~yL~ 75 (222)
..+|-|..+.++|+..+.| |+.+..+- ++ .+|. |++|+|.+ ++..+.+-..|++||.
T Consensus 12 sid~ecLa~~~yl~~~~~~~~~~~vv~s~n----~~---~Spt-g~LP~L~~~~~~~vsg~~~Iv~yL~ 72 (72)
T PF10568_consen 12 SIDPECLAVIAYLKFAGAPEQQFKVVPSNN----PW---LSPT-GELPALIDSGGTWVSGFRNIVEYLR 72 (72)
T ss_pred ccCHHHHHHHHHHHhCCCCCceEEEEEcCC----CC---cCCC-CCCCEEEECCCcEEECHHHHHHhhC
Confidence 3789999999999999999 77775542 22 3788 89999999 8999999999999983
No 129
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.95 E-value=4.1e-05 Score=64.49 Aligned_cols=70 Identities=19% Similarity=0.307 Sum_probs=54.8
Q ss_pred CCCceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHh-hc--------CCCCCcccEEEeCCeEeeehHHHH
Q 041211 1 MAEEVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELL-KY--------NPVHKKIPVLVHNGKPIAESLVIL 71 (222)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~-~~--------~p~~g~vP~L~~~g~~l~eS~aI~ 71 (222)
|. ++++|+.++||+|.++.-+|...||+|+.+.++-.....++. .. ... .+||.+..||.+|.+-..+.
T Consensus 1 m~-~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~-~tvP~ifi~~~~igGf~~l~ 78 (410)
T PRK12759 1 MV-EVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHI-RTVPQIFVGDVHIGGYDNLM 78 (410)
T ss_pred CC-cEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCC-CccCeEEECCEEEeCchHHH
Confidence 55 799999999999999999999999999999997432222322 21 344 58999999999888876665
Q ss_pred H
Q 041211 72 E 72 (222)
Q Consensus 72 ~ 72 (222)
.
T Consensus 79 ~ 79 (410)
T PRK12759 79 A 79 (410)
T ss_pred H
Confidence 5
No 130
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.92 E-value=6.8e-05 Score=53.80 Aligned_cols=70 Identities=17% Similarity=0.171 Sum_probs=56.2
Q ss_pred ceEEEeec------CCcHHHHHHHHHHHcCCCceEeecCCCC-CchhHhhcCC----CCCcccEEEeCCeEeeehHHHHH
Q 041211 4 EVKLYGTW------VSPFSRRIELALKLKGVPFEYMEEDLSN-KSPELLKYNP----VHKKIPVLVHNGKPIAESLVILE 72 (222)
Q Consensus 4 ~~~Ly~~~------~sp~~~~v~~~L~~~gi~y~~~~v~~~~-~~~~~~~~~p----~~g~vP~L~~~g~~l~eS~aI~~ 72 (222)
+++||..+ ++|+|.+++-+|+.+||+|+.++++... ..+++.+... . .++|.+..+|..|.....+.+
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~-~tvPqVFI~G~~IGG~del~~ 79 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKA-VSLPRVFVDGRYLGGAEEVLR 79 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCC-CCCCEEEECCEEEecHHHHHH
Confidence 47899998 8999999999999999999999988642 2444544322 2 489999999999999888877
Q ss_pred HH
Q 041211 73 YI 74 (222)
Q Consensus 73 yL 74 (222)
.-
T Consensus 80 L~ 81 (147)
T cd03031 80 LN 81 (147)
T ss_pred HH
Confidence 43
No 131
>PRK10824 glutaredoxin-4; Provisional
Probab=97.83 E-value=0.00012 Score=50.18 Aligned_cols=71 Identities=24% Similarity=0.298 Sum_probs=56.2
Q ss_pred CceEEEee-----cCCcHHHHHHHHHHHcCCCceEeecCCC-CCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHH
Q 041211 3 EEVKLYGT-----WVSPFSRRIELALKLKGVPFEYMEEDLS-NKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYI 74 (222)
Q Consensus 3 ~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~y~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL 74 (222)
+++.+|.. +.||||.++.-+|...|++|..+.++-. .-...+...+-. .+||-+..+|..|.+...+....
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~-~TVPQIFI~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANW-PTFPQLWVDGELVGGCDIVIEMY 91 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHHHH
Confidence 57888876 4999999999999999999998877643 223345555655 69999999999999988777743
No 132
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00047 Score=46.36 Aligned_cols=71 Identities=20% Similarity=0.268 Sum_probs=59.4
Q ss_pred CceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhH----hhcCCCCCcccEEEeCCeEeeehHHHHHHH
Q 041211 3 EEVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPEL----LKYNPVHKKIPVLVHNGKPIAESLVILEYI 74 (222)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~----~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL 74 (222)
+++.+|+-++||||.++.-+|...|+++..+.+|-.....++ .++.-. .+||.+..+|..|.....+..+-
T Consensus 14 ~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~-~tvP~vFI~Gk~iGG~~dl~~lh 88 (104)
T KOG1752|consen 14 NPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQ-RTVPNVFIGGKFIGGASDLMALH 88 (104)
T ss_pred CCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCC-CCCCEEEECCEEEcCHHHHHHHH
Confidence 689999999999999999999999999999999877544443 334545 58999999999999998888754
No 133
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00039 Score=42.91 Aligned_cols=63 Identities=27% Similarity=0.397 Sum_probs=47.4
Q ss_pred CCCceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCC-----------CCchhHhhc--CCCCCcccEEEe-CCeEee
Q 041211 1 MAEEVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLS-----------NKSPELLKY--NPVHKKIPVLVH-NGKPIA 65 (222)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~-----------~~~~~~~~~--~p~~g~vP~L~~-~g~~l~ 65 (222)
|+ +.+||+.+.||-|--..-.|+-.+++|+.+.+.-. +..++|-+. |-+ --+|+|.. ||.++.
T Consensus 1 ms-kp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gy-iGIPall~~d~~vVl 77 (85)
T COG4545 1 MS-KPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGY-IGIPALLTDDGKVVL 77 (85)
T ss_pred CC-CceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCc-ccceEEEeCCCcEEE
Confidence 77 66999999999999999999999999999987532 355666433 333 34799985 555544
No 134
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=97.46 E-value=0.00071 Score=47.51 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHhcccc
Q 041211 120 REVAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDLV 196 (222)
Q Consensus 120 ~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 196 (222)
..+...++...|..||..+.......| ++|+-||.+|+.|+.+-. ..|..+ -|++.+|+++|.+...+
T Consensus 57 t~~~i~~l~~~L~~Le~ll~~~~~~n~-~LS~dDi~lFp~LR~Lti---vkgi~~-----P~~V~~Y~~~~s~~t~V 124 (132)
T PF04399_consen 57 TPELIAELNADLEELEPLLASPNAVNG-ELSIDDIILFPILRSLTI---VKGIQW-----PPKVRAYMDRMSKATGV 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCTTBTTS-S--HHHHHHHHHHHHHCT---CTTS--------HHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHHHHHhccccccCC-CCCHHHHHHHHHHhhhhh---ccCCcC-----CHHHHHHHHHHHHHcCC
Confidence 456788889999999999986655555 899999999999988732 224433 58999999999986554
No 135
>PTZ00062 glutaredoxin; Provisional
Probab=97.43 E-value=0.00076 Score=51.18 Aligned_cols=70 Identities=24% Similarity=0.229 Sum_probs=54.7
Q ss_pred CceEEEee-----cCCcHHHHHHHHHHHcCCCceEeecCCCC-CchhHhhcCCCCCcccEEEeCCeEeeehHHHHHH
Q 041211 3 EEVKLYGT-----WVSPFSRRIELALKLKGVPFEYMEEDLSN-KSPELLKYNPVHKKIPVLVHNGKPIAESLVILEY 73 (222)
Q Consensus 3 ~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~y~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~y 73 (222)
+++.||.. +.||||+++.-+|...||+|+...++-.. ....+.+.+-. .++|.+..+|..|.+...+.+.
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~-~TvPqVfI~G~~IGG~d~l~~l 188 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNW-PTYPQLYVNGELIGGHDIIKEL 188 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHHH
Confidence 57888855 58999999999999999999988876432 22344455555 5899999999999887777663
No 136
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.00027 Score=59.82 Aligned_cols=122 Identities=15% Similarity=0.230 Sum_probs=82.1
Q ss_pred cEEEeCCeEeeehHHHHHHHHhhc-CCCCCCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHH
Q 041211 55 PVLVHNGKPIAESLVILEYIDETW-KNNPILPQDPYQRAMVRFWAKFIDEKILATGWKANFGEGKEREVAIEEFAEQMKF 133 (222)
Q Consensus 55 P~L~~~g~~l~eS~aI~~yL~~~~-~~~~l~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 133 (222)
+.+..+|..+.++..+..|..... ..+.++|.+ .++.+++.|.++.... ....+...+..
T Consensus 39 ~~~~~d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~~~vd~w~~~s~~~------------------~~~~~s~~~~~ 99 (712)
T KOG1147|consen 39 DKQFLDGRKLNGATEPVVYSAALAKADPKLFGNN-IDRSQVDHWVSFSSTF------------------SFDEISSSLSE 99 (712)
T ss_pred hhhccccccccCCccchhhhhhhcccCHhHcCCc-ccHHHHHHHHHHhhhc------------------chHHHHHHHHH
Confidence 333334566667777777766443 334588877 7899999999988651 23356677888
Q ss_pred HHHhcCCCccccCCCCCHHHHHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHhccccccc
Q 041211 134 LENELNGKDFFEGETIGFLDIVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDLVNEC 199 (222)
Q Consensus 134 le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~ 199 (222)
|+..|.-..||+|.++|+||+++|.+++.-........ . ...+-++.+|++-....++.+.+
T Consensus 100 ld~~l~~~t~lvg~sls~Ad~aiw~~l~~n~~~~~~lk--~--~k~~~~v~Rw~~~~~~~~a~~~v 161 (712)
T KOG1147|consen 100 LDKFLVLRTFLVGNSLSIADFAIWGALHSNGMRQEQLK--A--KKDYQNVERWYDLPEFQEAHNKV 161 (712)
T ss_pred HHhhhhHHHHhhccchhHHHHHHHHHHhcccchHHHHH--h--hCCchhhhhhcCcHhHHHHHHHH
Confidence 99999888999999999999999998876321111111 1 24677899999844444444333
No 137
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.26 E-value=0.00041 Score=47.51 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=31.1
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCC
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLS 38 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~ 38 (222)
++||+.+.||+|++++-+|+++|++|+.+.+.-.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~ 34 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEE 34 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCC
Confidence 6899999999999999999999999999987643
No 138
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.22 E-value=0.0015 Score=40.10 Aligned_cols=58 Identities=19% Similarity=0.289 Sum_probs=40.5
Q ss_pred ceEEEeecCCcHHHHHHHHHHHc-----CCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEee
Q 041211 4 EVKLYGTWVSPFSRRIELALKLK-----GVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIA 65 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~ 65 (222)
++++|+.++||+|.++.-+|++. +++|..+.++ . .+++....-. ..+|++..+|..+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~--~-~~~l~~~~~i-~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAA--E-FPDLADEYGV-MSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcc--c-CHhHHHHcCC-cccCEEEECCEEEE
Confidence 47899999999999998888765 4555555443 2 2334333333 36999999887665
No 139
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.18 E-value=0.00059 Score=46.18 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=30.6
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCC
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDL 37 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~ 37 (222)
|++|+.+.||+|++++-+|..+||+|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLK 33 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeecc
Confidence 589999999999999999999999999998753
No 140
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.17 E-value=0.00071 Score=47.74 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=30.9
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCC
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDL 37 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~ 37 (222)
+++|+.+.||+|++++-+|..+||+|+.+.+.-
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~ 34 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccC
Confidence 899999999999999999999999999998753
No 141
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.10 E-value=0.0035 Score=43.68 Aligned_cols=68 Identities=12% Similarity=0.108 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHhcccc
Q 041211 120 REVAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDLV 196 (222)
Q Consensus 120 ~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 196 (222)
..+...++...|..++..+..... +++.+|+-||.+|++|..+-. ..|..+ -|+|.+|+++|.+...+
T Consensus 58 t~~~i~~l~~~L~~l~~ll~~~~~-~n~~ls~DDi~lFp~LR~Lt~---vkgi~~-----P~~V~~Y~~~~s~~t~V 125 (128)
T cd03199 58 TPQYIAALNALLEELDPLILSSEA-VNGQLSTDDIILFPILRNLTL---VKGLVF-----PPKVKAYLERMSALTKV 125 (128)
T ss_pred cHHHHHHHHHHHHHHHHHHcCccc-cCCcCCHHHHHHHHHHhhhhh---hcCCCC-----CHHHHHHHHHHHHHhCC
Confidence 346677888899999999965444 455799999999999988732 224433 48999999999987554
No 142
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.09 E-value=0.00095 Score=45.98 Aligned_cols=33 Identities=24% Similarity=0.237 Sum_probs=30.8
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCC
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDL 37 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~ 37 (222)
+++|+.+.|++|++++-+|+.+||+|+.+.+.-
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~ 34 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFK 34 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCC
Confidence 799999999999999999999999999998753
No 143
>PRK10026 arsenate reductase; Provisional
Probab=97.04 E-value=0.0011 Score=47.23 Aligned_cols=35 Identities=14% Similarity=0.109 Sum_probs=32.4
Q ss_pred CCCceEEEeecCCcHHHHHHHHHHHcCCCceEeecC
Q 041211 1 MAEEVKLYGTWVSPFSRRIELALKLKGVPFEYMEED 36 (222)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~ 36 (222)
|+ +|++|+.+.|.-|++++-.|+++|++|+++.+-
T Consensus 1 m~-~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~ 35 (141)
T PRK10026 1 MS-NITIYHNPACGTSRNTLEMIRNSGTEPTIIHYL 35 (141)
T ss_pred CC-EEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeee
Confidence 75 899999999999999999999999999998764
No 144
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.88 E-value=0.003 Score=44.63 Aligned_cols=34 Identities=9% Similarity=0.135 Sum_probs=31.4
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCC
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLS 38 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~ 38 (222)
+++|+.+.|+.|++++-.|..+||+|+.+.+.-.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCC
Confidence 8999999999999999999999999999987643
No 145
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.87 E-value=0.0017 Score=44.90 Aligned_cols=33 Identities=15% Similarity=0.403 Sum_probs=30.4
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCC
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDL 37 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~ 37 (222)
+++|+.+.||+|++++-+|..+||+|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGE 33 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCC
Confidence 589999999999999999999999999988753
No 146
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.86 E-value=0.0028 Score=44.69 Aligned_cols=34 Identities=18% Similarity=0.106 Sum_probs=31.3
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCC
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLS 38 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~ 38 (222)
+++|+.+.|+.|+++.-+|..+||+|+.+.+.-.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCC
Confidence 8999999999999999999999999999987543
No 147
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.69 E-value=0.0045 Score=41.86 Aligned_cols=33 Identities=18% Similarity=0.347 Sum_probs=30.5
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCC
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDL 37 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~ 37 (222)
|++|+.+.|+.|++++-.|.++|++|+++.+.-
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~ 33 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRK 33 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEeccc
Confidence 689999999999999999999999999997753
No 148
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.62 E-value=0.0035 Score=43.01 Aligned_cols=34 Identities=15% Similarity=0.070 Sum_probs=30.9
Q ss_pred ceEEEeecCCcHHHHHHHHHHHcCCCceEeecCC
Q 041211 4 EVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDL 37 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~ 37 (222)
.|+||+.+.|+.|++++-.|+++|++|+++.+.-
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~ 34 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLT 34 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhc
Confidence 3799999999999999999999999999987643
No 149
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=96.62 E-value=0.018 Score=37.91 Aligned_cols=67 Identities=13% Similarity=0.115 Sum_probs=50.3
Q ss_pred eEEEeecCCc------HHHHHHHHHHHcCCCceEeecCCCC-CchhHhhcC----CCCCcccEEEeCCeEeeehHHHHH
Q 041211 5 VKLYGTWVSP------FSRRIELALKLKGVPFEYMEEDLSN-KSPELLKYN----PVHKKIPVLVHNGKPIAESLVILE 72 (222)
Q Consensus 5 ~~Ly~~~~sp------~~~~v~~~L~~~gi~y~~~~v~~~~-~~~~~~~~~----p~~g~vP~L~~~g~~l~eS~aI~~ 72 (222)
++||..+.++ .|++++.+|.-+||+|+.+.++... ...++.+.. +. .++|-+..+|..+.+...+..
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~-~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGK-PLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCC-CCCCEEEECCEEeeCHHHHHH
Confidence 7888877654 3668889999999999999998652 334444432 34 589999999999988866655
No 150
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.44 E-value=0.022 Score=35.99 Aligned_cols=55 Identities=16% Similarity=0.238 Sum_probs=40.7
Q ss_pred eEEEeecCCcHHHHH----HHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEee
Q 041211 5 VKLYGTWVSPFSRRI----ELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIA 65 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v----~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~ 65 (222)
+.+|. ++||.|..+ .-++++.|++++.+.++- .++..+.+- ..+|++..||..+.
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~---~~~a~~~~v--~~vPti~i~G~~~~ 61 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD---MNEILEAGV--TATPGVAVDGELVI 61 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC---HHHHHHcCC--CcCCEEEECCEEEE
Confidence 67776 999999988 668888899999888872 233334444 36999999886653
No 151
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=96.38 E-value=0.011 Score=40.83 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=30.6
Q ss_pred ceEEEeecCCcHHHHHHHHHHHcCCCceEeecC
Q 041211 4 EVKLYGTWVSPFSRRIELALKLKGVPFEYMEED 36 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~ 36 (222)
+|++|+.+.|.-|++++-.|+.+||+|+.+.+.
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 499999999999999999999999999988664
No 152
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=96.31 E-value=0.0075 Score=42.18 Aligned_cols=33 Identities=21% Similarity=0.124 Sum_probs=30.9
Q ss_pred ceEEEeecCCcHHHHHHHHHHHcCCCceEeecC
Q 041211 4 EVKLYGTWVSPFSRRIELALKLKGVPFEYMEED 36 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~ 36 (222)
.|+||+.+.|.-|++++-.|+++||+|+++.+.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 689999999999999999999999999998764
No 153
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.21 E-value=0.032 Score=35.70 Aligned_cols=55 Identities=27% Similarity=0.374 Sum_probs=39.6
Q ss_pred ceEEEeecCCcHHHHHHHHHHHc--CCCceEeecCCCCCchhHhhcCCCCCcccEEEeCC
Q 041211 4 EVKLYGTWVSPFSRRIELALKLK--GVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNG 61 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~--gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g 61 (222)
+++||+.++|+.|..+.-.|... ..+++...+|..++..++.+-. -.||+|..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~---~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYG---YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSC---TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhc---CCCCEEEEcC
Confidence 48999999999999999999965 4456677777665444433333 3799999877
No 154
>PRK10853 putative reductase; Provisional
Probab=96.15 E-value=0.0091 Score=41.27 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=30.0
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecC
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEED 36 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~ 36 (222)
+++|+.+.|.-|++++-.|+++|++|+++.+-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 89999999999999999999999999988764
No 155
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.049 Score=35.95 Aligned_cols=72 Identities=22% Similarity=0.253 Sum_probs=51.5
Q ss_pred CceEEE-----eecCCcHHHHHHHHHHHcC-CCceEeecCCC-CCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHH
Q 041211 3 EEVKLY-----GTWVSPFSRRIELALKLKG-VPFEYMEEDLS-NKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYID 75 (222)
Q Consensus 3 ~~~~Ly-----~~~~sp~~~~v~~~L~~~g-i~y~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~ 75 (222)
+++.|| .+|.|+||.++-=+|...| ++|..+.|--. +-+..+.+.+-. -++|-|-.+|..+..|..|.+..+
T Consensus 15 n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~W-PT~PQLyi~GEfvGG~DIv~Em~q 93 (105)
T COG0278 15 NPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNW-PTFPQLYVNGEFVGGCDIVREMYQ 93 (105)
T ss_pred CceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCC-CCCceeeECCEEeccHHHHHHHHH
Confidence 467777 3689999999999999999 66666655322 122223333444 689999999999999988877543
No 156
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=95.72 E-value=0.017 Score=39.48 Aligned_cols=32 Identities=22% Similarity=0.138 Sum_probs=29.6
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecC
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEED 36 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~ 36 (222)
|++|+.+.|.-|++++-.|+++|++|+++.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 68999999999999999999999999988763
No 157
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=95.66 E-value=0.019 Score=39.47 Aligned_cols=32 Identities=25% Similarity=0.140 Sum_probs=29.6
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecC
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEED 36 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~ 36 (222)
|++|+.+.|+-|++++-.|+++|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 68999999999999999999999999988764
No 158
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.24 E-value=0.097 Score=33.08 Aligned_cols=57 Identities=14% Similarity=0.240 Sum_probs=39.1
Q ss_pred ceEEEeecCCcHHHHHHHHHHH----cCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCe
Q 041211 4 EVKLYGTWVSPFSRRIELALKL----KGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGK 62 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~----~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~ 62 (222)
.++||+.++||+|..+.-.|+. .+..+....++..... +....... ..+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~-~~~~~~~v-~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENP-QKAMEYGI-MAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCH-HHHHHcCC-ccCCEEEECCE
Confidence 4789999999999988777653 4545666667765433 33333333 46999998775
No 159
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=95.04 E-value=0.16 Score=33.80 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=43.3
Q ss_pred CCCceEEEeecCCcH------HHHHHHHHHHcCCCceEeecCCCC-CchhHhhcC---------CCCCcccEEEeCCeEe
Q 041211 1 MAEEVKLYGTWVSPF------SRRIELALKLKGVPFEYMEEDLSN-KSPELLKYN---------PVHKKIPVLVHNGKPI 64 (222)
Q Consensus 1 M~~~~~Ly~~~~sp~------~~~v~~~L~~~gi~y~~~~v~~~~-~~~~~~~~~---------p~~g~vP~L~~~g~~l 64 (222)
|. |++|..+.++. .+++..+|+.++|+|+.+++.... ...+..+.. +. ...|-+..++..+
T Consensus 1 m~--I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~-~lpPqiF~~~~Y~ 77 (99)
T PF04908_consen 1 MV--IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGK-PLPPQIFNGDEYC 77 (99)
T ss_dssp -S--EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT---S-EEEETTEEE
T ss_pred CE--EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCC-CCCCEEEeCCEEE
Confidence 55 89998776653 558999999999999999887642 233334332 22 2347888888888
Q ss_pred eehHHHHHHH
Q 041211 65 AESLVILEYI 74 (222)
Q Consensus 65 ~eS~aI~~yL 74 (222)
.+=..+.+.-
T Consensus 78 Gdye~f~ea~ 87 (99)
T PF04908_consen 78 GDYEDFEEAN 87 (99)
T ss_dssp EEHHHHHHHH
T ss_pred eeHHHHHHHH
Confidence 8766655543
No 160
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=95.00 E-value=0.067 Score=31.15 Aligned_cols=54 Identities=30% Similarity=0.344 Sum_probs=36.4
Q ss_pred eEEEeecCCcHHHHHHHHHH-----HcCCCceEeecCCCCCchhHhhcCCCCCcccEEEe
Q 041211 5 VKLYGTWVSPFSRRIELALK-----LKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVH 59 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~-----~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~ 59 (222)
+++|+..+|++|.+....+. ..++.+..+.++............+. ..+|+++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGV-GGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCC-ccccEEEE
Confidence 46788899999999999998 44565555555443322222235666 68999985
No 161
>PHA02125 thioredoxin-like protein
Probab=94.57 E-value=0.19 Score=31.48 Aligned_cols=53 Identities=23% Similarity=0.416 Sum_probs=37.0
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCe
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGK 62 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~ 62 (222)
+.+|+.++||.|+.+.-.|+ ++.++...++... ..++....-- ..+|++. +|.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~--~~~~~~~~vd~~~-~~~l~~~~~v-~~~PT~~-~g~ 54 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLA--NVEYTYVDVDTDE-GVELTAKHHI-RSLPTLV-NTS 54 (75)
T ss_pred EEEEECCCCHhHHHHHHHHH--HHhheEEeeeCCC-CHHHHHHcCC-ceeCeEE-CCE
Confidence 78899999999998877775 3566777777544 3444444444 4799998 443
No 162
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=93.64 E-value=0.27 Score=33.24 Aligned_cols=68 Identities=22% Similarity=0.307 Sum_probs=47.3
Q ss_pred CCcHHHHHHHHHHHc---CCCceEeecCCCCCchhHhh-cCCCCCcccEEEe-CCe-------------EeeehHHHHHH
Q 041211 12 VSPFSRRIELALKLK---GVPFEYMEEDLSNKSPELLK-YNPVHKKIPVLVH-NGK-------------PIAESLVILEY 73 (222)
Q Consensus 12 ~sp~~~~v~~~L~~~---gi~y~~~~v~~~~~~~~~~~-~~p~~g~vP~L~~-~g~-------------~l~eS~aI~~y 73 (222)
.||.|-.+.=+|... .-..+.+.|+....+....+ +...+..+|+|+. +|. .|.++..|++|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 688888888777664 22355666776654555443 3333367999994 232 79999999999
Q ss_pred HHhhcC
Q 041211 74 IDETWK 79 (222)
Q Consensus 74 L~~~~~ 79 (222)
|.++|+
T Consensus 103 La~r~g 108 (112)
T PF11287_consen 103 LAERHG 108 (112)
T ss_pred HHHHcC
Confidence 999987
No 163
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=93.34 E-value=0.19 Score=32.78 Aligned_cols=58 Identities=16% Similarity=0.206 Sum_probs=38.1
Q ss_pred ceEEEeecCCcHHHHHHHHHHHc-----CCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEee
Q 041211 4 EVKLYGTWVSPFSRRIELALKLK-----GVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIA 65 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~ 65 (222)
.+++|..++||+|..+.-++... ++.+..+.+ .+..+...+.+= -.+|.++.||..+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~--~~~~e~a~~~~V--~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDG--ALFQDEVEERGI--MSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEh--HhCHHHHHHcCC--ccCCEEEECCEEEE
Confidence 47888899999999887776554 455554443 333333344444 36999998886554
No 164
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=92.60 E-value=0.67 Score=29.07 Aligned_cols=57 Identities=25% Similarity=0.331 Sum_probs=36.9
Q ss_pred eEEEeecCCcHHHHHHH----HHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEeeeh
Q 041211 5 VKLYGTWVSPFSRRIEL----ALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIAES 67 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~----~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS 67 (222)
+++ ..++||+|.++.- ++...|+.++.+.+ . ..++..+.+= ..+|++..||...+..
T Consensus 3 I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~--~-~~~~~~~ygv--~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 3 IKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI--E-DFEEIEKYGV--MSVPALVINGKVVFVG 63 (76)
T ss_dssp EEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET--T-THHHHHHTT---SSSSEEEETTEEEEES
T ss_pred EEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc--c-CHHHHHHcCC--CCCCEEEECCEEEEEe
Confidence 777 5667999996655 44556777766665 2 2444433333 4799999999765543
No 165
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.82 E-value=0.65 Score=35.51 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=54.6
Q ss_pred CceEEEe-----ecCCcHHHHHHHHHHHcCCCceEeecCCCC-CchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHH
Q 041211 3 EEVKLYG-----TWVSPFSRRIELALKLKGVPFEYMEEDLSN-KSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYID 75 (222)
Q Consensus 3 ~~~~Ly~-----~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~ 75 (222)
.+++||- .+.|+|++++.-+|...|++|+...|--.+ -+..+++.+-. -++|=|-.+|..+.+...|...++
T Consensus 139 ~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdW-PTfPQlyI~GEFiGGlDIl~~m~~ 216 (227)
T KOG0911|consen 139 KPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDW-PTFPQLYVKGEFIGGLDILKEMHE 216 (227)
T ss_pred CeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCC-CCccceeECCEeccCcHHHHHHhh
Confidence 4566762 678999999999999999999988775442 23334445555 689999999999999887777443
No 166
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=91.74 E-value=0.39 Score=35.40 Aligned_cols=38 Identities=24% Similarity=0.216 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcCCC---ccccCCC-CCHHHHHHHHHHhhh
Q 041211 126 EFAEQMKFLENELNGK---DFFEGET-IGFLDIVANLIAFWF 163 (222)
Q Consensus 126 ~~~~~l~~le~~L~~~---~~l~G~~-~t~aD~~l~~~l~~~ 163 (222)
...+.+..|++.|++. +|++|+. +|-+||.+++.|.-+
T Consensus 112 ~a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~ 153 (168)
T PF11801_consen 112 LAMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALL 153 (168)
T ss_pred HHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHH
Confidence 4567899999999887 9999987 999999999877654
No 167
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=90.90 E-value=0.32 Score=33.00 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=23.0
Q ss_pred EeecCCcHHHHHHHHHHHcCCCceEeecC
Q 041211 8 YGTWVSPFSRRIELALKLKGVPFEYMEED 36 (222)
Q Consensus 8 y~~~~sp~~~~v~~~L~~~gi~y~~~~v~ 36 (222)
|+.+.|.-|++++-.|+++||+|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 78999999999999999999999988764
No 168
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=82.60 E-value=1.1 Score=34.43 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHhccccc
Q 041211 128 AEQMKFLENELNGKDFFEGETIGFLDIVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDLVN 197 (222)
Q Consensus 128 ~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~ 197 (222)
.+.++.++..|.+.+|+.|.+++-.|+.++..+.-- +. ...+++..+|++.+.++-.+.
T Consensus 10 ~~glk~l~~sLA~ks~~~g~~~s~edv~vf~al~~e---------p~--s~~~v~~~~w~~~l~a~~~~~ 68 (231)
T KOG1668|consen 10 PAGLKKLNKSLAEKSYIEGYQLSKEDVVVFAALGVE---------PQ--SARLVNAERWYSKLEALLRLL 68 (231)
T ss_pred hhhhhhhhHhhhcccCCCCCCcccccceeehhcccC---------cc--hhhhhHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999988765321 11 256788899998887755443
No 169
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=78.83 E-value=13 Score=25.57 Aligned_cols=32 Identities=19% Similarity=0.433 Sum_probs=21.3
Q ss_pred eEEEeecCCcHHHHHHHHH----HHcCCCceEeecC
Q 041211 5 VKLYGTWVSPFSRRIELAL----KLKGVPFEYMEED 36 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L----~~~gi~y~~~~v~ 36 (222)
+..|+.++||+|+.+.=.| +..++++-.+.++
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd 62 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSE 62 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECC
Confidence 4456889999999865444 3345666666665
No 170
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=77.32 E-value=1.9 Score=29.70 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=13.6
Q ss_pred cccEEEe--CCeEeeehHHHHHHHHhhcC
Q 041211 53 KIPVLVH--NGKPIAESLVILEYIDETWK 79 (222)
Q Consensus 53 ~vP~L~~--~g~~l~eS~aI~~yL~~~~~ 79 (222)
.-|-|.+ +|..+.|+.||++|+..-|.
T Consensus 35 ~~~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 35 SGPLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp -S--EEE-S--S----HHHHHHHHTT--T
T ss_pred ccceeeecCCceEEecccHHHHHHHhhcC
Confidence 4477865 67999999999999998774
No 171
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=76.95 E-value=8.3 Score=34.16 Aligned_cols=58 Identities=19% Similarity=0.299 Sum_probs=37.9
Q ss_pred ceEEEeecCCcHHHHHHHH----HHHc-CCCceEeecCCCCCchhHh-hcCCCCCcccEEEeCCeEeee
Q 041211 4 EVKLYGTWVSPFSRRIELA----LKLK-GVPFEYMEEDLSNKSPELL-KYNPVHKKIPVLVHNGKPIAE 66 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~----L~~~-gi~y~~~~v~~~~~~~~~~-~~~p~~g~vP~L~~~g~~l~e 66 (222)
.|++|..++||+|-.+.-+ ..+. +|..+.+.+... +++. +.+- ..||.++.||..+..
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~---~~~~~~~~v--~~vP~~~i~~~~~~~ 542 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF---PDLKDEYGI--MSVPAIVVDDQQVYF 542 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc---HHHHHhCCc--eecCEEEECCEEEEe
Confidence 4788989999999876553 3444 677666655433 3444 3343 369999998865443
No 172
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=76.51 E-value=2.8 Score=36.74 Aligned_cols=71 Identities=17% Similarity=0.160 Sum_probs=44.1
Q ss_pred ceEEEeecCCcHHHHHHHHHHHcCC---CceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEeee----hHHHHHHHHh
Q 041211 4 EVKLYGTWVSPFSRRIELALKLKGV---PFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIAE----SLVILEYIDE 76 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi---~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~e----S~aI~~yL~~ 76 (222)
.+++|..+.||||-.+.-+++...+ ..+...++... -+++.+..-. ..||.+..||..+.+ -..++..+.+
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~-~~~~~~~~~v-~~VP~~~i~~~~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGAL-FQDEVEARNI-MAVPTVFLNGEEFGQGRMTLEEILAKLDT 196 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchh-CHhHHHhcCC-cccCEEEECCcEEEecCCCHHHHHHHHhc
Confidence 4889999999999987666655433 23333444443 3444443443 479999998866555 2345556554
No 173
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=75.94 E-value=4.9 Score=35.23 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=43.6
Q ss_pred ceEEEeecCCcHHHHHHHHHHHcCCC---ceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEeeeh----HHHHHHHHh
Q 041211 4 EVKLYGTWVSPFSRRIELALKLKGVP---FEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIAES----LVILEYIDE 76 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~---y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS----~aI~~yL~~ 76 (222)
.+++|..+.||||-.+.-+++...+. .+...++.... +++.+..-. ..||.+..||..+.+. ..+++.+..
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~-~~~~~~~~v-~~VP~~~i~~~~~~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALF-QDEVEALGI-QGVPAVFLNGEEFHNGRMDLAELLEKLEE 197 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhC-HHHHHhcCC-cccCEEEECCcEEEecCCCHHHHHHHHhh
Confidence 47899999999999877766554332 33334444443 334433333 4799999988666652 334455543
No 174
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=72.08 E-value=23 Score=22.71 Aligned_cols=70 Identities=21% Similarity=0.338 Sum_probs=41.7
Q ss_pred eEEEeecCCcHHHHHHHHHHH----cCCCceEeecCCCCCchhHhhcCCCCCcccEEEe--CCeEee------ehHHHHH
Q 041211 5 VKLYGTWVSPFSRRIELALKL----KGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVH--NGKPIA------ESLVILE 72 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~----~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~~l~------eS~aI~~ 72 (222)
+..++.++|+.|+...=.+.. .+-++....+|... ...+....-- ..+|.+.. +|..+. +...|.+
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~-~~~l~~~~~v-~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~ 98 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDE-NKELCKKYGV-KSVPTIIFFKNGKEVKRYNGPRNAESLIE 98 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTT-SHHHHHHTTC-SSSSEEEEEETTEEEEEEESSSSHHHHHH
T ss_pred EEEEeCCCCCccccccceecccccccccccccchhhhhc-cchhhhccCC-CCCCEEEEEECCcEEEEEECCCCHHHHHH
Confidence 455678899999987644422 22266666777654 3444443334 47999983 664432 3445666
Q ss_pred HHHh
Q 041211 73 YIDE 76 (222)
Q Consensus 73 yL~~ 76 (222)
+|++
T Consensus 99 ~i~~ 102 (103)
T PF00085_consen 99 FIEK 102 (103)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6654
No 175
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=69.52 E-value=22 Score=25.24 Aligned_cols=75 Identities=16% Similarity=0.056 Sum_probs=47.6
Q ss_pred ceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEee---ehHHHHHHHHhhc
Q 041211 4 EVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIA---ESLVILEYIDETW 78 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~---eS~aI~~yL~~~~ 78 (222)
+|..|..+.|+.|..=.=.|+.+|+.+..+..+-...-..-..+-+..+..=+.+.+|..+- ...+|.+.|++..
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~~~p 104 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLAEKP 104 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHhCCC
Confidence 68899999999998877788888988877765433100000111111133445667775543 3578999998875
No 176
>PF11417 Inhibitor_G39P: Loader and inhibitor of phage G40P; InterPro: IPR024424 G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C-terminal is essential for helicase interaction [].; PDB: 1NO1_B.
Probab=67.69 E-value=15 Score=22.75 Aligned_cols=36 Identities=19% Similarity=0.535 Sum_probs=22.7
Q ss_pred ehHHHHHHHHhhcCC--CCCCCCCHHHHHHHHHHHHHHhh
Q 041211 66 ESLVILEYIDETWKN--NPILPQDPYQRAMVRFWAKFIDE 103 (222)
Q Consensus 66 eS~aI~~yL~~~~~~--~~l~p~~~~~~a~~~~~~~~~~~ 103 (222)
|..-|+.++...||. ..+.+.+ .+..++.|.....+
T Consensus 5 E~~~ll~~I~~aYP~~~~~f~~~~--~k~~v~~W~~~L~d 42 (71)
T PF11417_consen 5 ETAKLLKLIKAAYPQWAGNFKPTD--SKETVDLWYDMLKD 42 (71)
T ss_dssp HHHHHHHHHHHHST---TT---ST--HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCcchhccchhh--HHHHHHHHHHHHHh
Confidence 567789999999983 2344554 35667777776654
No 177
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=67.50 E-value=31 Score=22.30 Aligned_cols=57 Identities=14% Similarity=0.179 Sum_probs=33.4
Q ss_pred eEEEeecCCcHHHHHHHHHHH----cCCCceEeecCCCCCchhHh-hcCCCCCcccEEE--eCCeEe
Q 041211 5 VKLYGTWVSPFSRRIELALKL----KGVPFEYMEEDLSNKSPELL-KYNPVHKKIPVLV--HNGKPI 64 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~----~gi~y~~~~v~~~~~~~~~~-~~~p~~g~vP~L~--~~g~~l 64 (222)
+.+|+.++|+.|+...-.+.. .+-.+....+|... .+++. ...- ..+|++. .+|..+
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~-~~~l~~~~~v--~~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE-DQEIAEAAGI--MGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC-CHHHHHHCCC--eeccEEEEEECCeEE
Confidence 455677899999987666644 22134555566544 33443 3333 3689887 366544
No 178
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=66.45 E-value=24 Score=26.87 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=33.7
Q ss_pred ceEEEeecCCcHHHHHHHHHHHcCC---CceEeecCCCCCchhHhhcCCCCCcccEEEeC
Q 041211 4 EVKLYGTWVSPFSRRIELALKLKGV---PFEYMEEDLSNKSPELLKYNPVHKKIPVLVHN 60 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi---~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~ 60 (222)
.+++|+.++||+|..+.-++...-- ......+|... .++.....-- ..+|++..+
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~-~~~~~~~~~V-~~vPtl~i~ 193 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANE-NPDLAEKYGV-MSVPKIVIN 193 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCC-CHHHHHHhCC-ccCCEEEEe
Confidence 3567889999999988877765321 23334455544 3344333333 369999864
No 179
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=63.47 E-value=13 Score=29.58 Aligned_cols=69 Identities=14% Similarity=0.175 Sum_probs=50.6
Q ss_pred ceEEEeecCC------cHHHHHHHHHHHcCCCceEeecCCCC-CchhHhhc----CCCCCcccEEEeCCeEeeehHHHHH
Q 041211 4 EVKLYGTWVS------PFSRRIELALKLKGVPFEYMEEDLSN-KSPELLKY----NPVHKKIPVLVHNGKPIAESLVILE 72 (222)
Q Consensus 4 ~~~Ly~~~~s------p~~~~v~~~L~~~gi~y~~~~v~~~~-~~~~~~~~----~p~~g~vP~L~~~g~~l~eS~aI~~ 72 (222)
++.+|..+-. -.|..||.+|+-.+|.|+..+|++.. ..+++..+ .-. ..+|.+..+|..|.....|++
T Consensus 132 ~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~-~~LPrVFV~GryIGgaeeV~~ 210 (281)
T KOG2824|consen 132 RVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKA-VSLPRVFVKGRYIGGAEEVVR 210 (281)
T ss_pred eEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhccccc-CccCeEEEccEEeccHHHhhh
Confidence 4666754422 24789999999999999999999873 34444332 122 578988899999999888877
Q ss_pred H
Q 041211 73 Y 73 (222)
Q Consensus 73 y 73 (222)
-
T Consensus 211 L 211 (281)
T KOG2824|consen 211 L 211 (281)
T ss_pred h
Confidence 4
No 180
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=61.32 E-value=29 Score=22.66 Aligned_cols=52 Identities=17% Similarity=0.073 Sum_probs=29.9
Q ss_pred eEEEeecCCcHHHHHHHHH--------HHcCCCceEeecCCCCC---chhHhhcCCCCCcccEEE
Q 041211 5 VKLYGTWVSPFSRRIELAL--------KLKGVPFEYMEEDLSNK---SPELLKYNPVHKKIPVLV 58 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L--------~~~gi~y~~~~v~~~~~---~~~~~~~~p~~g~vP~L~ 58 (222)
+..|+.++|++|+...-.+ ...+ .+....++.... ...+.....- ..+|++.
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i-~~~Pti~ 77 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGV-FGPPTYL 77 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCC-CCCCEEE
Confidence 4457889999999875332 1222 466666665432 2344433333 4689887
No 181
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=60.95 E-value=36 Score=20.86 Aligned_cols=54 Identities=26% Similarity=0.287 Sum_probs=32.8
Q ss_pred eEEEeecCCcHHHHHHHHHHH-----cCCCceEeecCCCCCchhHhhcCCCCCcccEEEe--CCe
Q 041211 5 VKLYGTWVSPFSRRIELALKL-----KGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVH--NGK 62 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~-----~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~ 62 (222)
+..++.++|+.|+...-.+.. .++.+-.+.. .. ...+...... ..+|++.. +|.
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~--~~-~~~~~~~~~v-~~~P~~~~~~~g~ 74 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDV--DE-NPELAEEYGV-RSIPTFLFFKNGK 74 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEEC--CC-ChhHHHhcCc-ccccEEEEEECCE
Confidence 456788899999988777766 5555444433 32 2333333333 36898774 565
No 182
>PHA03075 glutaredoxin-like protein; Provisional
Probab=59.69 E-value=16 Score=25.00 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=47.5
Q ss_pred CCCceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHh
Q 041211 1 MAEEVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDE 76 (222)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~ 76 (222)
|-..+.|+|-|.|+-|+.+.-+|.+..=+|+...|+..+ |. .-. |++=+|..++.. .=-..+.+|+..
T Consensus 1 mK~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlS----fF--sK~-g~v~~lg~d~~y-~lInn~~~~lgn 68 (123)
T PHA03075 1 MKKTLILFGKPLCSVCESISEALKELEDEYDILRVNILS----FF--SKD-GQVKVLGMDKGY-TLINNFFKHLGN 68 (123)
T ss_pred CCceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeee----ee--ccC-CceEEEecccce-ehHHHHHHhhcc
Confidence 556789999999999999999998888899999887642 11 111 677777765422 112445666654
No 183
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=58.27 E-value=24 Score=23.80 Aligned_cols=53 Identities=9% Similarity=0.113 Sum_probs=31.5
Q ss_pred eEEE-eecCCcHHHHHHHHHHHcCCC---ceEeecCCCCCchhHhhcCCCCCcccEEEe
Q 041211 5 VKLY-GTWVSPFSRRIELALKLKGVP---FEYMEEDLSNKSPELLKYNPVHKKIPVLVH 59 (222)
Q Consensus 5 ~~Ly-~~~~sp~~~~v~~~L~~~gi~---y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~ 59 (222)
++++ +.++||+|+.+.-+++...-. .+...++... .+++.....- ..+|++..
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~-~~~l~~~~~v-~~vPt~~i 81 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE-DKEKAEKYGV-ERVPTTIF 81 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc-CHHHHHHcCC-CcCCEEEE
Confidence 4455 557999999887777654321 2344444433 4455544444 57999984
No 184
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=57.06 E-value=48 Score=21.07 Aligned_cols=58 Identities=10% Similarity=0.103 Sum_probs=35.3
Q ss_pred eEEEeecCCcHHHHHHHHHHHc----CCCceEeecCCCCCchhHhhcCCCCCcccEEE--eCCeEe
Q 041211 5 VKLYGTWVSPFSRRIELALKLK----GVPFEYMEEDLSNKSPELLKYNPVHKKIPVLV--HNGKPI 64 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~----gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l 64 (222)
+..|+.++|+.|++..-.|+.. +..+....++......-....+.. .+|++. .+|..+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~--~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEIT--AVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCc--cccEEEEEECCEEE
Confidence 3456788999999886666542 345666666655433333445553 589887 366543
No 185
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.31 E-value=52 Score=22.81 Aligned_cols=67 Identities=15% Similarity=0.095 Sum_probs=38.9
Q ss_pred ecCCcHHHHH----HHHHHHcCCCceEeecCCCCCchhHhhcCCC-----C-CcccEEEe-C--CeEeeehHHHHHHHHh
Q 041211 10 TWVSPFSRRI----ELALKLKGVPFEYMEEDLSNKSPELLKYNPV-----H-KKIPVLVH-N--GKPIAESLVILEYIDE 76 (222)
Q Consensus 10 ~~~sp~~~~v----~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~-----~-g~vP~L~~-~--g~~l~eS~aI~~yL~~ 76 (222)
-++||.|.++ .=+|++..-+..++.+..++.+-|--.-||+ . --||+|.. + +..+.+..+-...|.+
T Consensus 42 qSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lve 121 (128)
T KOG3425|consen 42 QSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLVE 121 (128)
T ss_pred CcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHHHHH
Confidence 3689999865 5566667777777777766543333233333 0 13677774 2 3556665555555543
No 186
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=49.95 E-value=77 Score=21.31 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=35.2
Q ss_pred EEEeecCCcHHHHHHHHHHHcCC---CceEeecCCCCCchhHhhcCCCCCcccEEEe--CCeEeee
Q 041211 6 KLYGTWVSPFSRRIELALKLKGV---PFEYMEEDLSNKSPELLKYNPVHKKIPVLVH--NGKPIAE 66 (222)
Q Consensus 6 ~Ly~~~~sp~~~~v~~~L~~~gi---~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~~l~e 66 (222)
..|+.++|+.|+.+.-.+++..- ......+|... .+++.+...- ..+|++.. +|..+..
T Consensus 27 V~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~-~~~l~~~~~v-~~vPt~l~fk~G~~v~~ 90 (113)
T cd02989 27 CHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEK-APFLVEKLNI-KVLPTVILFKNGKTVDR 90 (113)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEccc-CHHHHHHCCC-ccCCEEEEEECCEEEEE
Confidence 34667899999977766644211 13555666544 3344443444 47999984 7776654
No 187
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=48.38 E-value=81 Score=21.33 Aligned_cols=16 Identities=13% Similarity=0.422 Sum_probs=12.2
Q ss_pred eEEEeecCCcHHHHHH
Q 041211 5 VKLYGTWVSPFSRRIE 20 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~ 20 (222)
+..|+.++||+|++..
T Consensus 18 lv~f~a~wC~~C~~~~ 33 (125)
T cd02951 18 LLLFSQPGCPYCDKLK 33 (125)
T ss_pred EEEEeCCCCHHHHHHH
Confidence 4456788999999865
No 188
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=45.00 E-value=27 Score=20.92 Aligned_cols=33 Identities=24% Similarity=0.186 Sum_probs=20.2
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeecCC
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEEDL 37 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~ 37 (222)
.+||.+....-+..++-+|+..||++....-..
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~ 33 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEHM 33 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S---
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCcc
Confidence 367777776679999999999999998775443
No 189
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=43.02 E-value=36 Score=25.00 Aligned_cols=36 Identities=11% Similarity=0.157 Sum_probs=26.3
Q ss_pred ceEEEeecCCcHHHHH----HHHHHHc-CCCceEeecCCCC
Q 041211 4 EVKLYGTWVSPFSRRI----ELALKLK-GVPFEYMEEDLSN 39 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v----~~~L~~~-gi~y~~~~v~~~~ 39 (222)
+|++|+...||||... +-+++.. ++.++...+.+..
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~ 41 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRP 41 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSST
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccccc
Confidence 4789999999999844 4444555 8888888777653
No 190
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=42.62 E-value=1e+02 Score=23.36 Aligned_cols=57 Identities=16% Similarity=0.235 Sum_probs=32.7
Q ss_pred eEEEee---cCCcHHHHHHHHHHHc-----CCCceEeecCCCCCchhHhhcCCCCCcccEEEe--CCeE
Q 041211 5 VKLYGT---WVSPFSRRIELALKLK-----GVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVH--NGKP 63 (222)
Q Consensus 5 ~~Ly~~---~~sp~~~~v~~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~~ 63 (222)
+.+|+. ++||.|+.+.=.+++. ++.+..+.++... .+++....-- ..+|++.. +|..
T Consensus 23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~-~~~l~~~~~V-~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 23 IVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE-DKEEAEKYGV-ERVPTTIILEEGKD 89 (215)
T ss_pred EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc-cHHHHHHcCC-CccCEEEEEeCCee
Confidence 556766 7899999776666543 2334445555433 3344333333 46899884 5533
No 191
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=42.19 E-value=1.1e+02 Score=20.77 Aligned_cols=60 Identities=13% Similarity=0.135 Sum_probs=31.8
Q ss_pred EEEeecCCcHHHHHHHHHHH------cCCCceEeecCCCCCchhHhhcCCCCCcccEEEe---CCeEeee
Q 041211 6 KLYGTWVSPFSRRIELALKL------KGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVH---NGKPIAE 66 (222)
Q Consensus 6 ~Ly~~~~sp~~~~v~~~L~~------~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~---~g~~l~e 66 (222)
.-++.++|+.|++..=.+.. .+..|..+.++... .+.....+..++.+|++.. +|..+..
T Consensus 24 V~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~-~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 24 LLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE-EPKDEEFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred EEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC-CchhhhcccCCCccceEEEECCCCCCchh
Confidence 33677899999977554444 22344444444322 1111234554224898873 5655443
No 192
>PF13728 TraF: F plasmid transfer operon protein
Probab=41.26 E-value=1e+02 Score=23.66 Aligned_cols=52 Identities=12% Similarity=0.093 Sum_probs=34.3
Q ss_pred eEEEeecCCcHHH----HHHHHHHHcCCCceEeecCCC---------CCchhHhhcCCCCCcccEEE
Q 041211 5 VKLYGTWVSPFSR----RIELALKLKGVPFEYMEEDLS---------NKSPELLKYNPVHKKIPVLV 58 (222)
Q Consensus 5 ~~Ly~~~~sp~~~----~v~~~L~~~gi~y~~~~v~~~---------~~~~~~~~~~p~~g~vP~L~ 58 (222)
+.+++.+.||+|+ .++.+....|+.+-.+-+|.. ..+.-...++. ..+|+|.
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v--~~~Pal~ 188 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGV--KVTPALF 188 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCC--CcCCEEE
Confidence 5567778999997 456666778998887777632 11223344555 3689887
No 193
>PRK09381 trxA thioredoxin; Provisional
Probab=40.18 E-value=1.1e+02 Score=20.07 Aligned_cols=57 Identities=16% Similarity=0.096 Sum_probs=32.3
Q ss_pred EEEeecCCcHHHHHHHHHH----HcCCCceEeecCCCCCchhHhhcCCCCCcccEEEe--CCeEe
Q 041211 6 KLYGTWVSPFSRRIELALK----LKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVH--NGKPI 64 (222)
Q Consensus 6 ~Ly~~~~sp~~~~v~~~L~----~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~~l 64 (222)
..++.++||.|+...-.++ ..+-.+....++......-....+. ..+|++.. +|..+
T Consensus 26 v~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 26 VDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI--RGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCC--CcCCEEEEEeCCeEE
Confidence 3467789999997754443 2222355556665543332334454 47998873 66544
No 194
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=40.01 E-value=38 Score=22.91 Aligned_cols=26 Identities=12% Similarity=0.348 Sum_probs=20.8
Q ss_pred ccEEE-eCCeEeeehHHHHHHHHhhcC
Q 041211 54 IPVLV-HNGKPIAESLVILEYIDETWK 79 (222)
Q Consensus 54 vP~L~-~~g~~l~eS~aI~~yL~~~~~ 79 (222)
+|.+. .+|.++++|..|+++....+.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 35555 589999999999998887764
No 195
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=39.25 E-value=37 Score=23.47 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=27.8
Q ss_pred ecCCcHHHHHHHHHH----HcCCCceEeecCCCCC------chhHhh--cCCCCCcccEEEe--CCeEeeehH
Q 041211 10 TWVSPFSRRIELALK----LKGVPFEYMEEDLSNK------SPELLK--YNPVHKKIPVLVH--NGKPIAESL 68 (222)
Q Consensus 10 ~~~sp~~~~v~~~L~----~~gi~y~~~~v~~~~~------~~~~~~--~~p~~g~vP~L~~--~g~~l~eS~ 68 (222)
.++||.|.++.=.++ ...-...++.+..++. .-.|+. .--. ..||+|.. ++..|.|..
T Consensus 35 ~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l-~~IPTLi~~~~~~rL~e~e 106 (119)
T PF06110_consen 35 QSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKL-KGIPTLIRWETGERLVEEE 106 (119)
T ss_dssp -BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC----SSSEEEECTSS-EEEHHH
T ss_pred CcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeee-eecceEEEECCCCccchhh
Confidence 468999998765443 3222455555544432 223333 1112 35899994 455666644
No 196
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=38.99 E-value=1.2e+02 Score=20.21 Aligned_cols=57 Identities=14% Similarity=0.082 Sum_probs=30.4
Q ss_pred eEEEeecCCcHHHHHHHHH-----HHcCCCceEeecCCCCCchhHhhcCCCCCcccEEE--eCCeE
Q 041211 5 VKLYGTWVSPFSRRIELAL-----KLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLV--HNGKP 63 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L-----~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~ 63 (222)
+..++.++|+.|+...=.+ ...+.......++... .+.+.....- ..+|++. .+|..
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~-~~~l~~~~~V-~~~Pt~~i~~~g~~ 91 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH-ERRLARKLGA-HSVPAIVGIINGQV 91 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc-cHHHHHHcCC-ccCCEEEEEECCEE
Confidence 3446788999998654333 2223334445555443 2333332333 4789887 36643
No 197
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.50 E-value=39 Score=21.30 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=21.2
Q ss_pred CCcHHHHHHHHHHHcCCCceEeecC
Q 041211 12 VSPFSRRIELALKLKGVPFEYMEED 36 (222)
Q Consensus 12 ~sp~~~~v~~~L~~~gi~y~~~~v~ 36 (222)
--+|++|+.-+++..||+|+..+..
T Consensus 14 evGF~rk~L~I~E~~~is~Eh~PSG 38 (76)
T cd04911 14 EVGFGRKLLSILEDNGISYEHMPSG 38 (76)
T ss_pred hhcHHHHHHHHHHHcCCCEeeecCC
Confidence 3479999999999999999977543
No 198
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=37.74 E-value=63 Score=17.32 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=20.4
Q ss_pred CcccEEEeCCeEeeehHHHHHHHHh
Q 041211 52 KKIPVLVHNGKPIAESLVILEYIDE 76 (222)
Q Consensus 52 g~vP~L~~~g~~l~eS~aI~~yL~~ 76 (222)
|.+|....++..+.....|.+|+++
T Consensus 25 g~i~~~~~g~~~~~~~~~l~~~~~~ 49 (49)
T TIGR01764 25 GELPAYRVGRHYRIPREDVDEYLEQ 49 (49)
T ss_pred CCCCeEEeCCeEEEeHHHHHHHHhC
Confidence 6788877788888998999888763
No 199
>PRK15371 effector protein YopJ; Provisional
Probab=37.20 E-value=1.2e+02 Score=24.58 Aligned_cols=66 Identities=9% Similarity=0.074 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHh
Q 041211 122 VAIEEFAEQMKFLENELNGKDFFEGETIGFLDIVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITK 192 (222)
Q Consensus 122 ~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 192 (222)
...+.+...++.||..++++.|+ -+..+..|+-..+.|...... -..++++ .-+..-.++++.+++
T Consensus 23 ~~~~~L~~~i~~le~~~~~G~~~-~~~~~~~Di~~lp~lv~~~N~-r~P~LNL---~~f~s~~~f~~aik~ 88 (287)
T PRK15371 23 ISNEELKNIITQLEDDIADGSWI-HKNYARTDLEVMPALVAQANN-KYPEMNL---KLVTSPLDLSIEIKE 88 (287)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCC-CchhHHhhHHhhHHHHHHHhc-cCCCCCe---eecCCHHHHHHHHHH
Confidence 45677999999999999998888 446899999999987655321 1224444 334455666666664
No 200
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=36.91 E-value=58 Score=24.63 Aligned_cols=35 Identities=26% Similarity=0.219 Sum_probs=24.2
Q ss_pred CceEEEeecCCcHHHHH----HHHHHHcCCCceEeecCC
Q 041211 3 EEVKLYGTWVSPFSRRI----ELALKLKGVPFEYMEEDL 37 (222)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v----~~~L~~~gi~y~~~~v~~ 37 (222)
++|.+|+...||||.-. .-++...+++++.+.+.+
T Consensus 1 ~~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 1 PKIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred CceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 46889999999998743 444455667666665544
No 201
>PTZ00051 thioredoxin; Provisional
Probab=36.81 E-value=1.1e+02 Score=19.37 Aligned_cols=58 Identities=12% Similarity=0.137 Sum_probs=32.0
Q ss_pred eEEEeecCCcHHHHHHHHHHHc---CCCceEeecCCCCCchhHhhcCCCCCcccEEEe--CCeEe
Q 041211 5 VKLYGTWVSPFSRRIELALKLK---GVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVH--NGKPI 64 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~---gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~~l 64 (222)
+..|+.++|+.|+...-.+... .-.+....++... ...+.+...- ..+|++.. +|..+
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~-~~~~~~~~~v-~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE-LSEVAEKENI-TSMPTFKVFKNGSVV 84 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc-hHHHHHHCCC-ceeeEEEEEeCCeEE
Confidence 3456788999999775555432 2224444555443 3334433333 46898873 55443
No 202
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=36.51 E-value=1.5e+02 Score=21.68 Aligned_cols=35 Identities=29% Similarity=0.256 Sum_probs=23.2
Q ss_pred eEEEe-ecCCcHHH-------HHHHHHHHcCCCceEeecCCCC
Q 041211 5 VKLYG-TWVSPFSR-------RIELALKLKGVPFEYMEEDLSN 39 (222)
Q Consensus 5 ~~Ly~-~~~sp~~~-------~v~~~L~~~gi~y~~~~v~~~~ 39 (222)
+.||. -.+||-|+ +..-.+...+-+++.+.|+...
T Consensus 36 V~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~ 78 (157)
T KOG2501|consen 36 VGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDR 78 (157)
T ss_pred EEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCC
Confidence 34443 45777776 4555566677789999987663
No 203
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=36.17 E-value=18 Score=24.72 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCCceEeecCCCC-CchhHhhcCCCCCcccEEEe---CCeEeeehHHHHHHHHhhcC
Q 041211 16 SRRIELALKLKGVPFEYMEEDLSN-KSPELLKYNPVHKKIPVLVH---NGKPIAESLVILEYIDETWK 79 (222)
Q Consensus 16 ~~~v~~~L~~~gi~y~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~---~g~~l~eS~aI~~yL~~~~~ 79 (222)
..-++-+++..|++.+...++-.. ...+-....|+.|.+|+++| --...-|...|++||+++..
T Consensus 25 P~LakEl~e~~g~~I~~~r~~~~~~l~~e~~~~~~~sGy~PtViD~lrRC~T~EEALEVInylek~GE 92 (128)
T PF09868_consen 25 PALAKELEEEEGISIEGYRLDEEQVLEEEEEEPDDFSGYNPTVIDYLRRCKTDEEALEVINYLEKRGE 92 (128)
T ss_pred HHHHHHHhccCCCceeeeechhhhhhhhccccCCCccCCCChHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 334556677788887765554221 11111123454478898876 34556677889999988754
No 204
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=35.40 E-value=1.1e+02 Score=18.80 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=20.7
Q ss_pred cccEEEeCCeEeeehHHHHHHHHhhc
Q 041211 53 KIPVLVHNGKPIAESLVILEYIDETW 78 (222)
Q Consensus 53 ~vP~L~~~g~~l~eS~aI~~yL~~~~ 78 (222)
+=|++..+| ...|-.+|.+||....
T Consensus 15 ~dPVi~~~G-~tyer~~I~~~l~~~~ 39 (73)
T PF04564_consen 15 RDPVILPSG-HTYERSAIERWLEQNG 39 (73)
T ss_dssp SSEEEETTS-EEEEHHHHHHHHCTTS
T ss_pred hCceeCCcC-CEEcHHHHHHHHHcCC
Confidence 349888788 7799999999999843
No 205
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=35.14 E-value=1.4e+02 Score=19.89 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=32.7
Q ss_pred EEEeecCCcHHHHHHHHHHHcCC---CceEeecCCCCCchhHhhcCCCCCcccEEEe--CCeEeeeh
Q 041211 6 KLYGTWVSPFSRRIELALKLKGV---PFEYMEEDLSNKSPELLKYNPVHKKIPVLVH--NGKPIAES 67 (222)
Q Consensus 6 ~Ly~~~~sp~~~~v~~~L~~~gi---~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~~l~eS 67 (222)
..|+.++|+.|+.+.-.++...- ......++.... .+.+..-- ..+|++.. +|..+...
T Consensus 29 v~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~--~l~~~~~i-~~~Pt~~~f~~G~~v~~~ 92 (113)
T cd02957 29 VHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA--FLVNYLDI-KVLPTLLVYKNGELIDNI 92 (113)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh--HHHHhcCC-CcCCEEEEEECCEEEEEE
Confidence 34677899989876555543211 133445554432 44333333 46899884 77665543
No 206
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=35.01 E-value=47 Score=21.86 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=13.4
Q ss_pred eEEEeecCCcHHHHHHHHHH
Q 041211 5 VKLYGTWVSPFSRRIELALK 24 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~ 24 (222)
+.+|+.++||+|++..-.+.
T Consensus 9 v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 9 VVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp EEEEE-TT-HHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHH
Confidence 55677899999998855554
No 207
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=34.02 E-value=60 Score=23.39 Aligned_cols=32 Identities=16% Similarity=-0.005 Sum_probs=27.7
Q ss_pred CCCceEEEeecCCcHHHHHHHHHHHcCCCceE
Q 041211 1 MAEEVKLYGTWVSPFSRRIELALKLKGVPFEY 32 (222)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~ 32 (222)
|+..+.|.|.++|+-+...+.+.+..|++|-.
T Consensus 1 ~~~~i~~~G~~GsGKst~~~~la~~lg~~~~d 32 (171)
T PRK03731 1 MTQPLFLVGARGCGKTTVGMALAQALGYRFVD 32 (171)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 66688899999999999999999999998653
No 208
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=32.63 E-value=1.5e+02 Score=19.65 Aligned_cols=69 Identities=10% Similarity=0.184 Sum_probs=39.8
Q ss_pred EEeecCCcHHHHHHHHHHHcCC--CceEeecCCCCCch--hHhhc---CCCCCcccEEEeCCe-EeeehHHHHHHHHhh
Q 041211 7 LYGTWVSPFSRRIELALKLKGV--PFEYMEEDLSNKSP--ELLKY---NPVHKKIPVLVHNGK-PIAESLVILEYIDET 77 (222)
Q Consensus 7 Ly~~~~sp~~~~v~~~L~~~gi--~y~~~~v~~~~~~~--~~~~~---~p~~g~vP~L~~~g~-~l~eS~aI~~yL~~~ 77 (222)
|++-..||+|....-.+...+. .++.+.+.-....+ ....+ +.. ..+-+ ..+|. ...++.|+..-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDAD-SRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHc-CeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 4677889999988877777765 34444441111011 11111 222 23333 55665 999999998876554
No 209
>PRK09266 hypothetical protein; Provisional
Probab=32.22 E-value=80 Score=24.92 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=38.5
Q ss_pred HHHHcCCCceEeecCCCC---CchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHhhc
Q 041211 22 ALKLKGVPFEYMEEDLSN---KSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDETW 78 (222)
Q Consensus 22 ~L~~~gi~y~~~~v~~~~---~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~~ 78 (222)
.+...|++++...++..+ ..+.|.-.+-. |-+|+-..|+..+.+...|.+.|.+.|
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~-gi~pV~~i~~~~~~~~~~~~~~l~~~~ 258 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWR-GQRAVSAIDDVALPDSHALLELLRRAY 258 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCcc-ceEEEEEECCEECCCCchHHHHHHHHH
Confidence 445669999998887652 33344443444 788999988887765567777777665
No 210
>PRK13947 shikimate kinase; Provisional
Probab=32.01 E-value=66 Score=23.12 Aligned_cols=32 Identities=13% Similarity=-0.045 Sum_probs=27.6
Q ss_pred CCCceEEEeecCCcHHHHHHHHHHHcCCCceEe
Q 041211 1 MAEEVKLYGTWVSPFSRRIELALKLKGVPFEYM 33 (222)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~ 33 (222)
|. +|.|.|.++|+-+.-.+.+.+..|++|-..
T Consensus 1 m~-~I~l~G~~GsGKst~a~~La~~lg~~~id~ 32 (171)
T PRK13947 1 MK-NIVLIGFMGTGKTTVGKRVATTLSFGFIDT 32 (171)
T ss_pred CC-eEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 66 699999999999999999999999887543
No 211
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=31.40 E-value=61 Score=24.20 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=18.0
Q ss_pred ceEEEeecCCcHHHHHHHHHHH
Q 041211 4 EVKLYGTWVSPFSRRIELALKL 25 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~ 25 (222)
.+.+|..+.||||++..-.+..
T Consensus 80 ~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 80 VVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEEECCCCccHHHHHHHHhh
Confidence 4667788899999999887764
No 212
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=30.97 E-value=1.2e+02 Score=18.93 Aligned_cols=53 Identities=30% Similarity=0.412 Sum_probs=33.0
Q ss_pred ceEEEeecCCcHHHHHH----HHH-HHcCCCceEeecCCCCCchhHhhcCCCCCcccEEE
Q 041211 4 EVKLYGTWVSPFSRRIE----LAL-KLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLV 58 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~----~~L-~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~ 58 (222)
.++||-...+|.|+++. =++ ++.+-+|+...+|... .+++.+..-- --.|+|+
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~-~P~lAe~~~i-vAtPtLv 60 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLK-QPQLAEEDKI-VATPTLV 60 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEccc-CHhHHhhCCE-EEechhh
Confidence 36788777777777543 233 4458899999999875 4444443333 2456665
No 213
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=30.66 E-value=2.2e+02 Score=25.05 Aligned_cols=72 Identities=18% Similarity=0.234 Sum_probs=46.7
Q ss_pred EEEeecCCcHHH-------HHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEe--CCeE------eeehHHH
Q 041211 6 KLYGTWVSPFSR-------RIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVH--NGKP------IAESLVI 70 (222)
Q Consensus 6 ~Ly~~~~sp~~~-------~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~~------l~eS~aI 70 (222)
.-||-+||+.|. ++.-.|.+.|-+.....||.... .++-...-. .-.|+|.. ||.. ..+...|
T Consensus 47 VeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-~~~~~~y~v-~gyPTlkiFrnG~~~~~Y~G~r~adgI 124 (493)
T KOG0190|consen 47 VEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-SDLASKYEV-RGYPTLKIFRNGRSAQDYNGPREADGI 124 (493)
T ss_pred EEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-hhhHhhhcC-CCCCeEEEEecCCcceeccCcccHHHH
Confidence 446778888776 34455666666888888887743 222222222 24788874 5543 4567889
Q ss_pred HHHHHhhcC
Q 041211 71 LEYIDETWK 79 (222)
Q Consensus 71 ~~yL~~~~~ 79 (222)
+.||-++.+
T Consensus 125 v~wl~kq~g 133 (493)
T KOG0190|consen 125 VKWLKKQSG 133 (493)
T ss_pred HHHHHhccC
Confidence 999998874
No 214
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=30.45 E-value=1.6e+02 Score=19.33 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=29.3
Q ss_pred eEEEeecCCcHHHHHHHHHHH-----cCCCceEeecCCCCCchhHh-hcCCCCCcccEEE
Q 041211 5 VKLYGTWVSPFSRRIELALKL-----KGVPFEYMEEDLSNKSPELL-KYNPVHKKIPVLV 58 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~-----~gi~y~~~~v~~~~~~~~~~-~~~p~~g~vP~L~ 58 (222)
+..|+.++||.|+...-.+.. .+..+....++.......+. +...- ..+|++.
T Consensus 25 lv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v-~~~Pti~ 83 (109)
T cd02993 25 LVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQL-KSFPTIL 83 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCC-CcCCEEE
Confidence 456788999999976544432 33345555555443122332 22333 4689886
No 215
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=30.22 E-value=1.4e+02 Score=18.66 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=30.4
Q ss_pred EEEeecCCcHHHHHHHHHHH----cCCCceEeecCCCCCchhHhhcCCCCCcccEEEe--CCe
Q 041211 6 KLYGTWVSPFSRRIELALKL----KGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVH--NGK 62 (222)
Q Consensus 6 ~Ly~~~~sp~~~~v~~~L~~----~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~ 62 (222)
..++.++|+.|+...-.+.. .+-.+....++......-....+- ..+|++.. +|.
T Consensus 19 i~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~P~~~~~~~g~ 79 (101)
T TIGR01068 19 VDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGI--RSIPTLLLFKNGK 79 (101)
T ss_pred EEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCC--CcCCEEEEEeCCc
Confidence 34567789999877544433 232355556665443222234444 36898773 554
No 216
>PRK13949 shikimate kinase; Provisional
Probab=29.82 E-value=77 Score=23.11 Aligned_cols=32 Identities=19% Similarity=0.101 Sum_probs=27.3
Q ss_pred CCCceEEEeecCCcHHHHHHHHHHHcCCCceEe
Q 041211 1 MAEEVKLYGTWVSPFSRRIELALKLKGVPFEYM 33 (222)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~ 33 (222)
|. +|.|.|.++|+-+.-.+.+.+..|+++-..
T Consensus 1 m~-~I~liG~~GsGKstl~~~La~~l~~~~id~ 32 (169)
T PRK13949 1 MA-RIFLVGYMGAGKTTLGKALARELGLSFIDL 32 (169)
T ss_pred Cc-EEEEECCCCCCHHHHHHHHHHHcCCCeecc
Confidence 54 799999999999999999999999876543
No 217
>PRK10996 thioredoxin 2; Provisional
Probab=29.80 E-value=2e+02 Score=20.11 Aligned_cols=58 Identities=10% Similarity=0.143 Sum_probs=33.5
Q ss_pred eEEEeecCCcHHHHHHHHHHH----cCCCceEeecCCCCCchhHhhcCCCCCcccEEEe--CCeEe
Q 041211 5 VKLYGTWVSPFSRRIELALKL----KGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVH--NGKPI 64 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~----~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~~l 64 (222)
+..|+.++|+.|+...-.+.. .+-.+....++......-....+- ..+|++.. +|..+
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V--~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRI--RSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCC--CccCEEEEEECCEEE
Confidence 445678899999876444433 233455566666543333334444 36898873 66544
No 218
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=28.98 E-value=1e+02 Score=22.24 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=21.0
Q ss_pred cCCcHHHHHHHHHHHcCCCceEeecCCC
Q 041211 11 WVSPFSRRIELALKLKGVPFEYMEEDLS 38 (222)
Q Consensus 11 ~~sp~~~~v~~~L~~~gi~y~~~~v~~~ 38 (222)
+.-+.+++++-.|++.||+|+......-
T Consensus 11 SD~~~~~~a~~~L~~~gi~~~~~V~saH 38 (150)
T PF00731_consen 11 SDLPIAEEAAKTLEEFGIPYEVRVASAH 38 (150)
T ss_dssp GGHHHHHHHHHHHHHTT-EEEEEE--TT
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEecc
Confidence 3458899999999999999998766543
No 219
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=28.36 E-value=2.4e+02 Score=20.71 Aligned_cols=56 Identities=13% Similarity=0.036 Sum_probs=31.9
Q ss_pred EeecCCcHHHHHHHHHH---HcCCCceEeecCCCCCchhHhhcCCCCCcccEEEe--CCeEeee
Q 041211 8 YGTWVSPFSRRIELALK---LKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVH--NGKPIAE 66 (222)
Q Consensus 8 y~~~~sp~~~~v~~~L~---~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~~l~e 66 (222)
++.++|+.|+.+--.|. ..--.+.++.|+.... ......+- ..+|++.. +|..+..
T Consensus 90 Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~--~l~~~f~v-~~vPTlllyk~G~~v~~ 150 (175)
T cd02987 90 IYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT--GASDEFDT-DALPALLVYKGGELIGN 150 (175)
T ss_pred EECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch--hhHHhCCC-CCCCEEEEEECCEEEEE
Confidence 46678998885543332 2111345555555432 44444555 57999884 7776654
No 220
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=27.16 E-value=77 Score=19.63 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=17.2
Q ss_pred eEEEeecCCcHHHHHHHHHHHc
Q 041211 5 VKLYGTWVSPFSRRIELALKLK 26 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~ 26 (222)
+.+|..+.||+|....-.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 4678889999999887666553
No 221
>PHA02278 thioredoxin-like protein
Probab=26.87 E-value=1.9e+02 Score=19.08 Aligned_cols=56 Identities=9% Similarity=0.137 Sum_probs=29.9
Q ss_pred EeecCCcHHHHHHHHHHHc----CCCceEeecCCCCC---chhHh-hcCCCCCcccEEEe--CCeEee
Q 041211 8 YGTWVSPFSRRIELALKLK----GVPFEYMEEDLSNK---SPELL-KYNPVHKKIPVLVH--NGKPIA 65 (222)
Q Consensus 8 y~~~~sp~~~~v~~~L~~~----gi~y~~~~v~~~~~---~~~~~-~~~p~~g~vP~L~~--~g~~l~ 65 (222)
|+-++|+.|+...=.++.. +.......++.... .+++. ..+- ..+|++.. +|..+.
T Consensus 21 F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I--~~iPT~i~fk~G~~v~ 86 (103)
T PHA02278 21 ITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDI--MSTPVLIGYKDGQLVK 86 (103)
T ss_pred EECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCC--ccccEEEEEECCEEEE
Confidence 5678999998665433222 22223344444321 23443 3444 36999984 776553
No 222
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.83 E-value=1.8e+02 Score=24.46 Aligned_cols=107 Identities=11% Similarity=0.061 Sum_probs=65.9
Q ss_pred ccEEEeCCeEeeehHHHHHHHHhhcCCCCCC-CCCHHHHHHHHHHHHHHhh--------hhhhhhhhhhcCCchhHHHHH
Q 041211 54 IPVLVHNGKPIAESLVILEYIDETWKNNPIL-PQDPYQRAMVRFWAKFIDE--------KILATGWKANFGEGKEREVAI 124 (222)
Q Consensus 54 vP~L~~~g~~l~eS~aI~~yL~~~~~~~~l~-p~~~~~~a~~~~~~~~~~~--------~l~~~~~~~~~~~~~~~~~~~ 124 (222)
.+.+.+.++.+.|+.+|..-|...-. .++ +-+..++.++..|+.-+.. .++..+...+.... -.+...
T Consensus 98 w~~~~~~dQ~~VEaa~la~aL~~a~~--~lW~~L~~~~k~~l~~wL~~~~~~~~~~nNW~lF~v~v~~~L~~~-G~~~d~ 174 (361)
T PF10022_consen 98 WGFIGDYDQRLVEAASLALALLRAPE--WLWDPLDEEEKENLVDWLKQIRGIKPPDNNWLLFRVMVEAFLKKV-GEEYDE 174 (361)
T ss_pred cCCcccchhhHhHHHHHHHHHHHCHH--HHHhhCCHHHHHHHHHHHHhcCcCCCccchhHHHHHHHHHHHHHc-CCCCcH
Confidence 45555667899999999998876532 133 4577888888888875543 12223332222110 011123
Q ss_pred HHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHhhh
Q 041211 125 EEFAEQMKFLENELNGKDFFEGETIGFLDIVANLIAFWF 163 (222)
Q Consensus 125 ~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~ 163 (222)
..+...++.+|+.-.+..|...+.-.-.|.+..-+++..
T Consensus 175 ~~i~~~l~~~e~~Y~GdGWY~DG~~~~~DYYns~aih~y 213 (361)
T PF10022_consen 175 ERIDYDLERIEEWYLGDGWYSDGPEFQFDYYNSWAIHPY 213 (361)
T ss_pred HHHHHHHHHHHHHhccCCccccCCccCCcchHHHHHHHH
Confidence 677888899999877777775444556787776555544
No 223
>PF12728 HTH_17: Helix-turn-helix domain
Probab=26.29 E-value=1.2e+02 Score=16.68 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=21.9
Q ss_pred CcccEEEeCCeEeeehHHHHHHHHhh
Q 041211 52 KKIPVLVHNGKPIAESLVILEYIDET 77 (222)
Q Consensus 52 g~vP~L~~~g~~l~eS~aI~~yL~~~ 77 (222)
|.+|....++.....-..|.+|++++
T Consensus 25 g~i~~~~~g~~~~~~~~~l~~~~~~~ 50 (51)
T PF12728_consen 25 GKIPPFKIGRKWRIPKSDLDRWLERR 50 (51)
T ss_pred CCCCeEEeCCEEEEeHHHHHHHHHhC
Confidence 68888887888999999999998764
No 224
>PHA00159 endonuclease I
Probab=25.89 E-value=2.5e+02 Score=20.03 Aligned_cols=71 Identities=21% Similarity=0.282 Sum_probs=42.7
Q ss_pred eEEEeecCCcHHHHHHHHHHHcCCCceEeec--CC------CCCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHh
Q 041211 5 VKLYGTWVSPFSRRIELALKLKGVPFEYMEE--DL------SNKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDE 76 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v--~~------~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~ 76 (222)
+.+-+-..|..=.++--.|+..||+|+.... .. ....|+|. -|. |.+ ++..|..-.|-..=+.-+.+
T Consensus 9 ~~~~~~fRSgLE~k~ak~Le~~gv~~~yE~~ki~y~~pA~~~~YTPDF~--Lpn-Gii--iEvKG~w~~ddR~K~lli~e 83 (148)
T PHA00159 9 IAKVGAFRSGLEDKVSKQLEKKGVKFDYELWKIPYVIPASDHKYTPDFL--LPN-GII--IETKGLWDSDDRKKHLLIRE 83 (148)
T ss_pred cceeccccchHHHHHHHHHHhcCCCeEeeeeeeeeeccCCCCeeCCcee--cCC-CCE--EEecccCChHHHHHHHHHHH
Confidence 4444556777788999999999999887633 22 12345554 444 555 55555555555544445555
Q ss_pred hcCC
Q 041211 77 TWKN 80 (222)
Q Consensus 77 ~~~~ 80 (222)
++|+
T Consensus 84 Q~P~ 87 (148)
T PHA00159 84 QYPE 87 (148)
T ss_pred HCCC
Confidence 5553
No 225
>PTZ00102 disulphide isomerase; Provisional
Probab=25.74 E-value=4.3e+02 Score=22.66 Aligned_cols=73 Identities=14% Similarity=0.167 Sum_probs=42.5
Q ss_pred eEEEeecCCcHHHHHHHH-------HHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEe--CCeEe-----eehHHH
Q 041211 5 VKLYGTWVSPFSRRIELA-------LKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVH--NGKPI-----AESLVI 70 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~-------L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~~l-----~eS~aI 70 (222)
+..++.++|++|++..=. +...+-++....++......-..+.+- ..+|++.. +|..+ .....|
T Consensus 53 lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i--~~~Pt~~~~~~g~~~~y~g~~~~~~l 130 (477)
T PTZ00102 53 LVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGV--RGYPTIKFFNKGNPVNYSGGRTADGI 130 (477)
T ss_pred EEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCC--CcccEEEEEECCceEEecCCCCHHHH
Confidence 456788899999866421 122344566666666543322233343 35898863 44322 245678
Q ss_pred HHHHHhhcC
Q 041211 71 LEYIDETWK 79 (222)
Q Consensus 71 ~~yL~~~~~ 79 (222)
.+|+.+..+
T Consensus 131 ~~~l~~~~~ 139 (477)
T PTZ00102 131 VSWIKKLTG 139 (477)
T ss_pred HHHHHHhhC
Confidence 999988764
No 226
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=24.95 E-value=1.5e+02 Score=19.76 Aligned_cols=29 Identities=28% Similarity=0.191 Sum_probs=23.3
Q ss_pred EEEeecCCcHHHHHHHHHHHcCCCceEee
Q 041211 6 KLYGTWVSPFSRRIELALKLKGVPFEYME 34 (222)
Q Consensus 6 ~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~ 34 (222)
.|......|...-++.+.+++|||++...
T Consensus 59 vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~ 87 (100)
T PF15608_consen 59 VLVRDPDDPDLAHLLLLAEEKGVPVEVYP 87 (100)
T ss_pred EEECCCCCccHHHHHHHHHHcCCcEEEeC
Confidence 44555677889999999999999998763
No 227
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=24.66 E-value=1.9e+02 Score=18.19 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=32.1
Q ss_pred EEEeecCCcHHHHHHHHHHHc----CCCceEeecCCCCCchhHhhcCCCCCcccEEE--eCCeE
Q 041211 6 KLYGTWVSPFSRRIELALKLK----GVPFEYMEEDLSNKSPELLKYNPVHKKIPVLV--HNGKP 63 (222)
Q Consensus 6 ~Ly~~~~sp~~~~v~~~L~~~----gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~ 63 (222)
..++.++|+.|+...-.++.. +-.+....++... .+.+.....- ..+|++. .+|..
T Consensus 17 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~l~~~~~i-~~~Pt~~~~~~g~~ 78 (96)
T cd02956 17 VDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA-QPQIAQQFGV-QALPTVYLFAAGQP 78 (96)
T ss_pred EEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC-CHHHHHHcCC-CCCCEEEEEeCCEE
Confidence 345678999999775555432 2234455666554 3444433333 4689988 46644
No 228
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=24.64 E-value=71 Score=19.09 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=16.8
Q ss_pred ceEEEee----cCCcHHHHHHHHHHH
Q 041211 4 EVKLYGT----WVSPFSRRIELALKL 25 (222)
Q Consensus 4 ~~~Ly~~----~~sp~~~~v~~~L~~ 25 (222)
+++||-+ ..|.||.||-.+|+.
T Consensus 2 ~mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 2 KMKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred cceeeEeecCCchHHHHHHHHHHHhC
Confidence 3788765 467799999988875
No 229
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=24.63 E-value=1.7e+02 Score=17.79 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=25.2
Q ss_pred EEeecCCcHHHHHHHHHHHcCCCceEeecCC
Q 041211 7 LYGTWVSPFSRRIELALKLKGVPFEYMEEDL 37 (222)
Q Consensus 7 Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~ 37 (222)
+..|+....+.++.-.|...|++++.+.+..
T Consensus 5 ~i~F~st~~a~~~ek~lk~~gi~~~liP~P~ 35 (73)
T PF11823_consen 5 LITFPSTHDAMKAEKLLKKNGIPVRLIPTPR 35 (73)
T ss_pred EEEECCHHHHHHHHHHHHHCCCcEEEeCCCh
Confidence 4456666789999999999999999887653
No 230
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=24.55 E-value=84 Score=24.40 Aligned_cols=23 Identities=4% Similarity=0.182 Sum_probs=18.1
Q ss_pred ceEEEeecCCcHHHHHHHHHHHc
Q 041211 4 EVKLYGTWVSPFSRRIELALKLK 26 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~ 26 (222)
.+.+|.-+.||||++..--+...
T Consensus 110 ~I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 110 VITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred EEEEEECCCChHHHHHHHHHHHH
Confidence 46778889999999987666553
No 231
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=24.48 E-value=2e+02 Score=18.39 Aligned_cols=55 Identities=7% Similarity=-0.038 Sum_probs=30.6
Q ss_pred eEEEeecCCcHHHHHHHHHHHc----CCCceEeecCCCCCchhHh-hcCCCCCcccEEEe--CCe
Q 041211 5 VKLYGTWVSPFSRRIELALKLK----GVPFEYMEEDLSNKSPELL-KYNPVHKKIPVLVH--NGK 62 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~----gi~y~~~~v~~~~~~~~~~-~~~p~~g~vP~L~~--~g~ 62 (222)
+..++.++|+.|+...-.+... +-.+....++.... +.+. +.+- ..+|++.. +|.
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~-~~~~~~~~v--~~~Pt~~~~~~g~ 83 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD-RMLCRSQGV--NSYPSLYVFPSGM 83 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc-HHHHHHcCC--CccCEEEEEcCCC
Confidence 3456788999998665444332 21245556665542 3333 3333 46898863 553
No 232
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=24.32 E-value=1.3e+02 Score=22.32 Aligned_cols=33 Identities=18% Similarity=0.051 Sum_probs=29.0
Q ss_pred CCceEEEeecCCcHHHHHHHHHHHcCCCceEee
Q 041211 2 AEEVKLYGTWVSPFSRRIELALKLKGVPFEYME 34 (222)
Q Consensus 2 ~~~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~ 34 (222)
..++.|.|+.+++-+---+.+....|.+|-..+
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 457999999999999999999999999987653
No 233
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.91 E-value=4.1e+02 Score=21.75 Aligned_cols=73 Identities=12% Similarity=0.186 Sum_probs=46.9
Q ss_pred eEEEeecCCcHHHHHHHHH----HHcCCCceEeecCCCCCchhHhhcCCCCCcccEEE--eCCeEeee------hHHHHH
Q 041211 5 VKLYGTWVSPFSRRIELAL----KLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLV--HNGKPIAE------SLVILE 72 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L----~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l~e------S~aI~~ 72 (222)
+.+|+.++|+-|+...=.| ++.+=.|....++... .+......-- ..||++. .+|..+.+ -..|-+
T Consensus 47 lV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~-~p~vAaqfgi-qsIPtV~af~dGqpVdgF~G~qPesqlr~ 124 (304)
T COG3118 47 LVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDA-EPMVAAQFGV-QSIPTVYAFKDGQPVDGFQGAQPESQLRQ 124 (304)
T ss_pred EEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCc-chhHHHHhCc-CcCCeEEEeeCCcCccccCCCCcHHHHHH
Confidence 4557788998888665544 3456678888888765 4444433333 5799887 35544332 357888
Q ss_pred HHHhhcC
Q 041211 73 YIDETWK 79 (222)
Q Consensus 73 yL~~~~~ 79 (222)
+|++..+
T Consensus 125 ~ld~~~~ 131 (304)
T COG3118 125 FLDKVLP 131 (304)
T ss_pred HHHHhcC
Confidence 8888765
No 234
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=23.82 E-value=87 Score=21.32 Aligned_cols=85 Identities=15% Similarity=0.037 Sum_probs=42.0
Q ss_pred HHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhcC----CchhHHHHHHHHHHHHHHHHHhcCCCcc
Q 041211 68 LVILEYIDETWKNNPILPQDPYQRAMVRFWAKFIDEKILATGWKANFG----EGKEREVAIEEFAEQMKFLENELNGKDF 143 (222)
Q Consensus 68 ~aI~~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~l~~le~~L~~~~~ 143 (222)
.+.++||.+..+ ++-.............+.+++.+...+...+-- +...+.........+...||..|++
T Consensus 9 ~~LI~yLte~L~---lFe~~~~~~~~~~Tv~d~vee~ia~~im~vc~Qnp~L~~~~R~~iirE~Daiv~DLeEVLa~--- 82 (113)
T PF12290_consen 9 DALIEYLTENLS---LFESSQSGDTGDETVEDVVEEQIASQIMAVCEQNPELEFSQRFQIIREADAIVYDLEEVLAS--- 82 (113)
T ss_pred HHHHHHHHHhHH---HhcCCCCCCcccchHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 467889988765 332111111111222233333332222222221 2334556677777888888888864
Q ss_pred ccCCCCCHHHHHHHH
Q 041211 144 FEGETIGFLDIVANL 158 (222)
Q Consensus 144 l~G~~~t~aD~~l~~ 158 (222)
..+..+|-.-+.+..
T Consensus 83 V~~~~aT~eQ~~Fi~ 97 (113)
T PF12290_consen 83 VWNQKATNEQIAFIE 97 (113)
T ss_pred HHcCCCCHHHHHHHH
Confidence 124456666655443
No 235
>COG5460 Uncharacterized conserved protein [Function unknown]
Probab=23.62 E-value=2e+02 Score=18.13 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=20.2
Q ss_pred HHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHhhhhhhhh
Q 041211 69 VILEYIDETWKNNPILPQDPYQRAMVRFWAKFIDEKILATG 109 (222)
Q Consensus 69 aI~~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~l~~~~ 109 (222)
-|-+||.+... ...+.-.+...++++.+.+.+.+
T Consensus 17 ~i~dYL~~E~~-------~evg~~~Ae~fleFis~elGpyf 50 (82)
T COG5460 17 RIRDYLTRETE-------TEVGKFDAEFFLEFISGELGPYF 50 (82)
T ss_pred HHHHHHHHHHH-------HHHHHhhHHHHHHHHHhhhhHHH
Confidence 36677776543 12344456677777777665543
No 236
>PF03421 YopJ: YopJ Serine/Threonine acetyltransferase; InterPro: IPR005083 The infection of mammalian host cells by Yersinia sp. causes a rapid induction of the mitogen-activated protein kinase (MAPK; including the ERK, JNK and p38 pathways) and nuclear factor kappaB (NF-kappaB) signalling pathways that would typically result in cytokine production and initiation of the innate immune response. However, these pathways are rapidly inhibited promoting apoptosis. YopJ has been shown to block phosphorylation of active site residues []. It has also been shown that YopJ acetyltransferase is activated by eukaryotic host cell inositol hexakisphosphate []. Serine and threonine acetylation is yet another complication to the control of signalling pathways and may be a may be a widespread mode of biochemical regulation of endogenous processes in eukaryotic cells. It has been shown that YopJ is a serine/threonine acetyltransferase []. It acetylates the serine and threonine residues in the phosphorylation sites of MAPK kinases and nuclear factor kappaB, preventing their activation by phosphorylation and the inhibition of these signalling pathways []. This entry contains YopJ and related proteins.
Probab=23.08 E-value=2.3e+02 Score=21.03 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHh
Q 041211 125 EEFAEQMKFLENELNGKDFFEGETIGFLDIVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITK 192 (222)
Q Consensus 125 ~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 192 (222)
+.+....+.+++.+..+.|+ .+.++-.|+-..+.|...... ...+.++ .-+..-...++.+.+
T Consensus 2 ~~L~~y~~~~~~~~~~g~~~-~~~~~~~D~~~lp~lv~~~N~-r~P~LnL---~~~~~~~~~~~~i~~ 64 (177)
T PF03421_consen 2 ESLKEYIERLEDDIKNGSWP-NESYAELDIKMLPALVAAENA-RYPGLNL---HFFDSPEDFVQAIKE 64 (177)
T ss_pred hHHHHHHHHHHHHHHhCCCC-CcchhhhhHHHHHHHHHHHhh-cCCCCce---EEcCCcHHHHHHHHh
Confidence 35677888899999998888 668999999999987655321 1123343 334444666666643
No 237
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=22.97 E-value=2.9e+02 Score=19.82 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=33.3
Q ss_pred eEEEeecCCcHHHHHHHHHHH-----cCCCceEeecCCCCCchhHh-hcCCCC----CcccEEE--eCCeEee
Q 041211 5 VKLYGTWVSPFSRRIELALKL-----KGVPFEYMEEDLSNKSPELL-KYNPVH----KKIPVLV--HNGKPIA 65 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~-----~gi~y~~~~v~~~~~~~~~~-~~~p~~----g~vP~L~--~~g~~l~ 65 (222)
+..|+.++||.|+...-.++. .+-.++...++.... ++.. +.+-.. +++|++. .+|..+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~-~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF-PNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC-HHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 455778899999876544432 223355566665542 3333 223220 2389887 4776654
No 238
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=22.80 E-value=2.8e+02 Score=24.01 Aligned_cols=72 Identities=7% Similarity=-0.130 Sum_probs=38.5
Q ss_pred HHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhcCCCccccC
Q 041211 68 LVILEYIDETWKNNPILPQDPYQRAMVRFWAKFIDEKILATGWKANFGEGKEREVAIEEFAEQMKFLENELNGKDFFEG 146 (222)
Q Consensus 68 ~aI~~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G 146 (222)
..+.++|+++|+-+-+....+..-...+.|+..+...+... -++..++.+.++.+.+...-..|++.++...
T Consensus 246 ~~~a~~Lee~~GiP~~~~~~p~G~~~t~~~l~~l~~~~g~~-------~~~~i~~er~~~~~~~~d~~~~l~gkrvai~ 317 (455)
T PRK14476 246 RKAAEALEARTGVPYLVFPSLTGLEAVDRFIATLAQISGRP-------VPAKYRRQRAQLQDAMLDGHFYFGGKRVAIA 317 (455)
T ss_pred HHHHHHHHHHhCCCeEecCCCcChHHHHHHHHHHHHHHCCC-------CcHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 47899999999765433222344445555555554433211 1223333344455555555556777665543
No 239
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=22.71 E-value=97 Score=22.17 Aligned_cols=45 Identities=18% Similarity=0.085 Sum_probs=26.0
Q ss_pred HHHhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhcCCCcc
Q 041211 99 KFIDEKILATGWKANFGEGKEREVAIEEFAEQMKFLENELNGKDF 143 (222)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~ 143 (222)
.|+++.+.|.+...+...........+.+....+.+|++++|+-+
T Consensus 9 ~YiDTaliPL~~i~~~~~~k~~a~~~E~~~~l~~~lErqfKGRv~ 53 (142)
T PF10673_consen 9 EYIDTALIPLIPIDFGEDMKEAASQGEFLRLLADELERQFKGRVL 53 (142)
T ss_pred cccceeeeeccccCccccHHHHHHHHHHHHHHHHHHHHhcCceEE
Confidence 455555555443333223334455566677777788888887543
No 240
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=22.38 E-value=2.2e+02 Score=18.48 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=30.7
Q ss_pred eEEEeecCCcHHHHHHHHHHHc------CC----CceEeecCCCCCchhHhhcCCCCCcccEEEe--CCe
Q 041211 5 VKLYGTWVSPFSRRIELALKLK------GV----PFEYMEEDLSNKSPELLKYNPVHKKIPVLVH--NGK 62 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~~------gi----~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~--~g~ 62 (222)
+..|+.++|+.|+...-.+... +. .+....++.... .++....-- ..+|++.. +|.
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-~~l~~~~~v-~~~Ptl~~~~~g~ 89 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-SDIADRYRI-NKYPTLKLFRNGM 89 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-HHHHHhCCC-CcCCEEEEEeCCc
Confidence 3456788999999776555321 11 234445555443 344333333 46898873 554
No 241
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=22.07 E-value=1.9e+02 Score=23.99 Aligned_cols=69 Identities=20% Similarity=0.363 Sum_probs=45.3
Q ss_pred EEEeec---CCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEeeehHHHHHHHHhhcCCCC
Q 041211 6 KLYGTW---VSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIAESLVILEYIDETWKNNP 82 (222)
Q Consensus 6 ~Ly~~~---~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~ 82 (222)
.+||.. .|||.+-..-.+...| |..+..+...-+. .| + +.|.+-++|.. -|-..+++++.+.++..+
T Consensus 80 l~HGL~G~s~s~y~r~L~~~~~~rg--~~~Vv~~~Rgcs~-----~~-n-~~p~~yh~G~t-~D~~~~l~~l~~~~~~r~ 149 (345)
T COG0429 80 LFHGLEGSSNSPYARGLMRALSRRG--WLVVVFHFRGCSG-----EA-N-TSPRLYHSGET-EDIRFFLDWLKARFPPRP 149 (345)
T ss_pred EEeccCCCCcCHHHHHHHHHHHhcC--CeEEEEecccccC-----Cc-c-cCcceecccch-hHHHHHHHHHHHhCCCCc
Confidence 345544 5566666666666677 7777776553111 22 2 57889988877 777888888888787666
Q ss_pred CC
Q 041211 83 IL 84 (222)
Q Consensus 83 l~ 84 (222)
++
T Consensus 150 ~~ 151 (345)
T COG0429 150 LY 151 (345)
T ss_pred eE
Confidence 54
No 242
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=22.05 E-value=2.2e+02 Score=18.08 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=29.6
Q ss_pred eEEEeecCCcHHHHHHHHHHH-----cCCCceEeecCCCCCchhHhhcCCCCCcccEEEe
Q 041211 5 VKLYGTWVSPFSRRIELALKL-----KGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVH 59 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~~-----~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~ 59 (222)
+..|+.++||.|+...=.+.. .+..+....++... .+.+.....- ..+|++..
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-~~~~~~~~~i-~~~Pt~~~ 77 (101)
T cd02994 20 MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ-EPGLSGRFFV-TALPTIYH 77 (101)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC-CHhHHHHcCC-cccCEEEE
Confidence 455778899999876544332 23344555555543 3334332233 46888874
No 243
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=22.01 E-value=3.4e+02 Score=21.02 Aligned_cols=71 Identities=17% Similarity=0.082 Sum_probs=43.7
Q ss_pred ceEEEeecCCcHHHHHHHHHHHcCCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEee----ehHHHHHHHHh
Q 041211 4 EVKLYGTWVSPFSRRIELALKLKGVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIA----ESLVILEYIDE 76 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~----eS~aI~~yL~~ 76 (222)
++++|.+.+|--|--..=.|+.+|+-=....++.....-.+.+ |-- =.+|.+..||..+. |...|-.-+.-
T Consensus 12 ~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~~~~-~~V-~SvP~Vf~DGel~~~dpVdp~~ies~~~G 86 (265)
T COG5494 12 EVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPFLAFE-KGV-ISVPSVFIDGELVYADPVDPEEIESILSG 86 (265)
T ss_pred EEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChHHHhh-cce-eecceEEEcCeEEEcCCCCHHHHHHHHcC
Confidence 4889999999888888888999988644444544332212222 222 25899888775543 34455554443
No 244
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=21.46 E-value=91 Score=23.38 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=18.1
Q ss_pred CCeEeeehHHHHHHHHhhcC
Q 041211 60 NGKPIAESLVILEYIDETWK 79 (222)
Q Consensus 60 ~g~~l~eS~aI~~yL~~~~~ 79 (222)
.+..|+||..|-+|+.++|+
T Consensus 154 ad~lIaDs~~I~~y~~~~y~ 173 (185)
T PF09314_consen 154 ADRLIADSKGIQDYIKERYG 173 (185)
T ss_pred CCEEEEcCHHHHHHHHHHcC
Confidence 45689999999999999997
No 245
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=21.27 E-value=1e+02 Score=24.30 Aligned_cols=20 Identities=10% Similarity=0.252 Sum_probs=16.4
Q ss_pred eEEEeecCCcHHHHHHHHHH
Q 041211 5 VKLYGTWVSPFSRRIELALK 24 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~L~ 24 (222)
+.+|.-+.||||++..--+.
T Consensus 121 I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 121 VYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEEECCCChhHHHHHHHHH
Confidence 66778899999999876654
No 246
>PRK14531 adenylate kinase; Provisional
Probab=21.13 E-value=1.4e+02 Score=21.97 Aligned_cols=30 Identities=10% Similarity=0.055 Sum_probs=26.4
Q ss_pred CCCceEEEeecCCcHHHHHHHHHHHcCCCc
Q 041211 1 MAEEVKLYGTWVSPFSRRIELALKLKGVPF 30 (222)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~L~~~gi~y 30 (222)
|-.++.+.|.++|+-+--++.+.+..|+++
T Consensus 1 ~~~~i~i~G~pGsGKsT~~~~la~~~g~~~ 30 (183)
T PRK14531 1 MKQRLLFLGPPGAGKGTQAARLCAAHGLRH 30 (183)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 666789999999999999999999988875
No 247
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=21.04 E-value=5.3e+02 Score=22.01 Aligned_cols=129 Identities=15% Similarity=0.026 Sum_probs=62.2
Q ss_pred eEEEe-ecCCc-HHHHHHHHHHHcCCCceEeecC-----C-----------C-CCchhHhhcCCCCCcccEEEeCCeEee
Q 041211 5 VKLYG-TWVSP-FSRRIELALKLKGVPFEYMEED-----L-----------S-NKSPELLKYNPVHKKIPVLVHNGKPIA 65 (222)
Q Consensus 5 ~~Ly~-~~~sp-~~~~v~~~L~~~gi~y~~~~v~-----~-----------~-~~~~~~~~~~p~~g~vP~L~~~g~~l~ 65 (222)
+-|.+ ++..+ ...-++-+|+..|+++..+.-. . . ..-+++.+. +. ..+=++. .. .
T Consensus 158 VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~~~e~i~~~-~~-A~lniv~-~~---~ 231 (428)
T cd01965 158 VNLLPGFPLTPGDVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTLEEIRDA-GN-AKATIAL-GE---Y 231 (428)
T ss_pred EEEECCCCCCccCHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCCCcHHHHHHh-cc-CcEEEEE-Ch---h
Confidence 44442 33333 3788899999999988876421 0 0 111222221 11 1222111 11 2
Q ss_pred ehHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhcCCCcccc
Q 041211 66 ESLVILEYIDETWKNNPILPQDPYQRAMVRFWAKFIDEKILATGWKANFGEGKEREVAIEEFAEQMKFLENELNGKDFFE 145 (222)
Q Consensus 66 eS~aI~~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~ 145 (222)
......++|+++++-+-+....+..-...+.|+..+...+.... ++.....+.++.+.+...-..|.+.+...
T Consensus 232 ~~~~~a~~L~e~~GiP~~~~~~p~G~~~t~~~l~~l~~~~g~~~-------~~~~~~~r~~~~~~~~~~~~~l~gk~v~i 304 (428)
T cd01965 232 SGRKAAKALEEKFGVPYILFPTPIGLKATDEFLRALSKLSGKPI-------PEELERERGRLLDAMLDSHFYLGGKRVAI 304 (428)
T ss_pred hhHHHHHHHHHHHCCCeeecCCCcChHHHHHHHHHHHHHHCCCC-------CHHHHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 33578999999997553322223444555666655554332211 22222233333333333335677766654
Q ss_pred C
Q 041211 146 G 146 (222)
Q Consensus 146 G 146 (222)
.
T Consensus 305 ~ 305 (428)
T cd01965 305 A 305 (428)
T ss_pred E
Confidence 3
No 248
>PF05663 DUF809: Protein of unknown function (DUF809); InterPro: IPR008527 This family consists of several proteins of unknown function Raphanus sativus (Radish) and Brassica napus (Rape).
Probab=20.89 E-value=26 Score=23.01 Aligned_cols=27 Identities=15% Similarity=0.074 Sum_probs=21.4
Q ss_pred eecCCcHHHHHHHHHHHcCCCceEeec
Q 041211 9 GTWVSPFSRRIELALKLKGVPFEYMEE 35 (222)
Q Consensus 9 ~~~~sp~~~~v~~~L~~~gi~y~~~~v 35 (222)
+++....|.|..--|+...|||+++.-
T Consensus 42 wfsnnqhclrtmrhleklkipyefqyg 68 (138)
T PF05663_consen 42 WFSNNQHCLRTMRHLEKLKIPYEFQYG 68 (138)
T ss_pred HHcCcHHHHHHHHHHHhcCCCeeeeec
Confidence 455666788888889999999998743
No 249
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=20.80 E-value=3.3e+02 Score=23.39 Aligned_cols=72 Identities=10% Similarity=-0.073 Sum_probs=38.1
Q ss_pred HHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhcCCCccccC
Q 041211 68 LVILEYIDETWKNNPILPQDPYQRAMVRFWAKFIDEKILATGWKANFGEGKEREVAIEEFAEQMKFLENELNGKDFFEG 146 (222)
Q Consensus 68 ~aI~~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G 146 (222)
...+++|+++|+-+-+....+..-...+.|+..+...+... -++..++.+.++.+.+...-..|++.++...
T Consensus 246 ~~~a~~Lee~~giP~~~~~~p~G~~~t~~~l~~l~~~~g~~-------~~~~~~~~r~~~~~~l~~~~~~l~Gkrvai~ 317 (432)
T TIGR01285 246 RRAASLLADRCGVPYIVFPSLMGLEAVDAFLHVLMKISGRA-------VPERFERQRRQLQDAMLDTHFFLGGKKVAIA 317 (432)
T ss_pred HHHHHHHHHHHCCCeEecCCCcChHHHHHHHHHHHHHHCCC-------ccHHHHHHHHHHHHHHHHHHHhhCCCEEEEE
Confidence 36899999999754332212233444455555444432211 1223344455566666666667777665543
No 250
>PRK08118 topology modulation protein; Reviewed
Probab=20.77 E-value=1.5e+02 Score=21.58 Aligned_cols=31 Identities=19% Similarity=0.068 Sum_probs=26.9
Q ss_pred CCCceEEEeecCCcHHHHHHHHHHHcCCCceE
Q 041211 1 MAEEVKLYGTWVSPFSRRIELALKLKGVPFEY 32 (222)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~L~~~gi~y~~ 32 (222)
|. +|.+.|.++|+-+.-++.+.+..|+++-.
T Consensus 1 m~-rI~I~G~~GsGKSTlak~L~~~l~~~~~~ 31 (167)
T PRK08118 1 MK-KIILIGSGGSGKSTLARQLGEKLNIPVHH 31 (167)
T ss_pred Cc-EEEEECCCCCCHHHHHHHHHHHhCCCcee
Confidence 54 78999999999999999999999998543
No 251
>PRK06217 hypothetical protein; Validated
Probab=20.68 E-value=1.3e+02 Score=22.07 Aligned_cols=29 Identities=14% Similarity=0.073 Sum_probs=25.3
Q ss_pred CCCceEEEeecCCcHHHHHHHHHHHcCCCc
Q 041211 1 MAEEVKLYGTWVSPFSRRIELALKLKGVPF 30 (222)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~L~~~gi~y 30 (222)
|. +|.|.|.++|+-+-.++.+.+..|+++
T Consensus 1 ~~-~I~i~G~~GsGKSTla~~L~~~l~~~~ 29 (183)
T PRK06217 1 MM-RIHITGASGSGTTTLGAALAERLDIPH 29 (183)
T ss_pred Ce-EEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 54 689999999999999999999999874
No 252
>COG4365 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.53 E-value=3.7e+02 Score=23.23 Aligned_cols=58 Identities=19% Similarity=0.137 Sum_probs=33.9
Q ss_pred cCCCCCHHHHHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHHhcccccccCCChhhHHHHHHH
Q 041211 145 EGETIGFLDIVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANITKIDLVNECRPPREKHLAFVKA 212 (222)
Q Consensus 145 ~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 212 (222)
.++.-|++|++..-+...+. ..|.-+++ ...|.+++...-| |++.+.+.......+..
T Consensus 203 i~e~~sytD~Fa~Llh~lf~----~eGllvld-s~~p~lrkLeapm-----f~kiL~k~~~l~~af~d 260 (537)
T COG4365 203 IAESHSYTDFFARLLHGLFA----PEGLLVLD-SGDPALRKLEAPM-----FAKILEKPLALSAAFED 260 (537)
T ss_pred HhhcccHHHHHHHHHHHhhh----hcceEEec-CCChHHHHHHHHH-----HHHHHhhhHhHHHHHHH
Confidence 45789999998665444432 22555555 6788888765544 44444444444444433
No 253
>COG3526 Uncharacterized protein conserved in bacteria [Posttranslational modification, protein turnover, chaperones]
Probab=20.23 E-value=1.6e+02 Score=18.90 Aligned_cols=52 Identities=10% Similarity=-0.025 Sum_probs=33.2
Q ss_pred CceEEEeecCCcHHHHHHHHHHHc----CCCceEeecCCCCCchhHhhcCCCCCcccEEEeCCeEeee
Q 041211 3 EEVKLYGTWVSPFSRRIELALKLK----GVPFEYMEEDLSNKSPELLKYNPVHKKIPVLVHNGKPIAE 66 (222)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~L~~~----gi~y~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~e 66 (222)
++|.++|...|-|-.|+-|+..+. +-+...+. +.|-.|-+=-+..||..|+|
T Consensus 6 p~i~I~YCtQCnWlLRa~WmaQElL~TF~~dlgeV~------------L~PgTGG~FeI~~dg~~iWe 61 (99)
T COG3526 6 PRIEITYCTQCNWLLRAAWMAQELLSTFADDLGEVA------------LIPGTGGVFEITCDGVLIWE 61 (99)
T ss_pred ceEEEEEechhhHHHHHHHHHHHHHHHHHhhhheEE------------EecCCCceEEEEECCEEEEE
Confidence 578999999999988888887764 22222222 23312344444568888887
No 254
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=20.05 E-value=1.8e+02 Score=18.41 Aligned_cols=35 Identities=9% Similarity=0.257 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhhHhhhhhhCcCCCCcccchhHHHHHHHHH
Q 041211 152 LDIVANLIAFWFPVRQDALGIEAFTQEKFPVLFKWIANIT 191 (222)
Q Consensus 152 aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~ 191 (222)
-|+..|+++..+... +.+-+ .++--++..|++++.
T Consensus 42 ~DvL~~~ll~~L~~~----~r~~~-k~dg~~~s~Wlq~La 76 (77)
T PF11732_consen 42 YDVLTFCLLERLSNP----GRSRL-KDDGTNISQWLQSLA 76 (77)
T ss_pred HHHHHHHHHHHHhcc----cchhc-CcCCCCHHHHHHHHh
Confidence 488889888877411 22111 244578899998874
Done!