BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041212
         (337 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P0CG32|ZCC18_HUMAN Putative zinc finger CCHC domain-containing protein 18 OS=Homo
           sapiens GN=ZCCHC18 PE=5 SV=1
          Length = 403

 Score = 39.3 bits (90), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 19/86 (22%)

Query: 68  DWSLSQQSTIRDFLYSFSSP---------AAYP--SVADWWRTVRLYTDQTGSNITGNIV 116
           DWS+S++  ++  + +   P         AA P  SVAD+ R ++L   ++ S++T +  
Sbjct: 74  DWSMSEEEKLKRLMKTLRGPAREVMRLLQAANPNLSVADFLRAMKLVFGESESSVTAH-- 131

Query: 117 LSGEFYDTRYSHGA----YLSRLDMQ 138
             G+F++T  + G     Y+ RL++Q
Sbjct: 132 --GKFFNTLQAQGEKASLYVIRLEVQ 155


>sp|P87027|SPG1_SCHPO Septum-promoting GTP-binding protein 1 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=spg1 PE=1 SV=1
          Length = 198

 Score = 38.5 bits (88), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 46/117 (39%), Gaps = 16/117 (13%)

Query: 80  FLYSFSSPAAYPSVADWWRTVRLYTDQTGSNITGNIVLSGEFYDTRYSHGAYLSRLDMQS 139
           F++  S  +   S+ +W+R  R      G N T   +L G    T+Y H     R D + 
Sbjct: 88  FMFDLSRKSTLNSIKEWYRQAR------GFNKTAVPILIG----TKYDHFMTFPREDQEE 137

Query: 140 IIRTAVNKRAMALNPHSGLYLVLTSHDVQVQDFCRAVCGFHY---FTFPNIVGVTVP 193
           I + A   R  A    + L    TSH + VQ   + V    +    T P I  V  P
Sbjct: 138 ITKQA---RRYAKAMKASLVFCSTSHSINVQKIFKIVLAKVFDLKCTIPEIKNVGDP 191


>sp|Q91YN5|UAP1_MOUSE UDP-N-acetylhexosamine pyrophosphorylase OS=Mus musculus GN=Uap1
           PE=1 SV=1
          Length = 522

 Score = 33.5 bits (75), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 139 SIIRTAVNKRAMALNPHSGLYLVLTSHDVQVQDF-CRAVCGFHYFTFPNIVGVTVPYAWV 197
            II    NK +MA + + GLY  L + ++ V+D   R +C  H +   NI+       ++
Sbjct: 207 KIILEEKNKVSMAPDGNGGLYRALAAQNI-VEDMEQRGICSIHVYCVDNILVKVADPRFI 265

Query: 198 GY---SGAQC 204
           G+    GA C
Sbjct: 266 GFCIQKGADC 275


>sp|Q9PT62|FZD4_XENLA Frizzled-4 OS=Xenopus laevis GN=fzd4 PE=2 SV=1
          Length = 523

 Score = 32.7 bits (73), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 12/49 (24%)

Query: 204 CPGMC------------AYPFAWPGYSGSSSSPPRNNEGHNIMRAPNGD 240
           C GMC             + FAWP     S  PP+N+  H  M  P  D
Sbjct: 103 CGGMCLSVKRRCEPVLKEFGFAWPESLNCSKFPPQNDHNHMCMEGPGDD 151


>sp|A0LU34|MSHC_ACIC1 L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside
           ligase OS=Acidothermus cellulolyticus (strain ATCC 43068
           / 11B) GN=mshC PE=3 SV=1
          Length = 403

 Score = 32.7 bits (73), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 10/70 (14%)

Query: 226 RNNEGHNIMRAPNGDVGVDGMISVLAHELAEVSSNP----LVNAWYA--GDDPTAPT--- 276
           R  E    +R P G  G DG+++ +   LA+    P    L++ W    GDDP APT   
Sbjct: 334 RLAEWRAAVRRPRGAPG-DGLLAAVRDRLADDLDAPGAIALIDEWTTQDGDDPDAPTLVA 392

Query: 277 EIADLCLGVY 286
            +AD  LGV+
Sbjct: 393 AMADALLGVH 402


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.136    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,430,826
Number of Sequences: 539616
Number of extensions: 6098388
Number of successful extensions: 12818
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 12815
Number of HSP's gapped (non-prelim): 7
length of query: 337
length of database: 191,569,459
effective HSP length: 118
effective length of query: 219
effective length of database: 127,894,771
effective search space: 28008954849
effective search space used: 28008954849
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)