Query 041212
Match_columns 337
No_of_seqs 114 out of 177
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 04:53:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041212.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041212hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04674 Phi_1: Phosphate-indu 100.0 3E-127 6E-132 904.2 24.2 269 47-333 1-272 (273)
2 PF07172 GRP: Glycine rich pro 71.5 3.6 7.8E-05 34.3 2.6 23 10-32 6-28 (95)
3 TIGR01432 QOXA cytochrome aa3 53.3 8.4 0.00018 35.8 1.8 16 150-167 134-149 (217)
4 MTH00139 COX2 cytochrome c oxi 45.8 14 0.0003 34.7 2.0 18 149-168 143-160 (226)
5 TIGR01433 CyoA cytochrome o ub 40.4 17 0.00036 34.4 1.7 18 149-168 142-159 (226)
6 COG3560 FMR2 Predicted oxidore 39.3 44 0.00096 31.5 4.2 41 125-165 16-58 (200)
7 TIGR02866 CoxB cytochrome c ox 38.2 20 0.00043 32.8 1.8 23 150-175 121-143 (201)
8 MTH00038 COX2 cytochrome c oxi 38.0 21 0.00046 33.6 2.0 18 149-168 143-160 (229)
9 MTH00168 COX2 cytochrome c oxi 36.0 25 0.00053 33.1 2.1 22 149-173 143-164 (225)
10 MTH00023 COX2 cytochrome c oxi 35.3 25 0.00055 33.4 2.0 18 149-168 154-171 (240)
11 MTH00154 COX2 cytochrome c oxi 32.4 28 0.0006 32.9 1.8 22 149-173 143-164 (227)
12 MTH00140 COX2 cytochrome c oxi 31.5 31 0.00066 32.4 1.9 24 149-175 143-166 (228)
13 MTH00047 COX2 cytochrome c oxi 30.9 30 0.00066 32.0 1.8 17 150-168 120-136 (194)
14 MTH00117 COX2 cytochrome c oxi 30.2 33 0.00071 32.4 1.9 18 149-168 143-160 (227)
15 MTH00080 COX2 cytochrome c oxi 28.4 36 0.00078 32.4 1.8 22 149-173 146-167 (231)
16 MTH00027 COX2 cytochrome c oxi 28.3 38 0.00083 32.9 2.0 18 149-168 177-194 (262)
17 MTH00185 COX2 cytochrome c oxi 27.4 40 0.00087 31.9 2.0 18 149-168 143-160 (230)
18 MTH00051 COX2 cytochrome c oxi 26.7 38 0.00083 32.1 1.7 18 149-168 147-164 (234)
19 MTH00008 COX2 cytochrome c oxi 26.5 43 0.00094 31.6 2.0 18 149-168 143-160 (228)
20 MTH00098 COX2 cytochrome c oxi 25.8 50 0.0011 31.2 2.3 23 149-174 143-165 (227)
21 MTH00129 COX2 cytochrome c oxi 24.4 47 0.001 31.4 1.8 18 149-168 143-160 (230)
22 MTH00076 COX2 cytochrome c oxi 24.0 50 0.0011 31.2 1.9 18 149-168 143-160 (228)
23 MTH00261 ATP8 ATP synthase F0 23.8 47 0.001 26.1 1.4 17 7-23 11-27 (68)
24 PF15232 DUF4585: Domain of un 21.8 93 0.002 25.4 2.7 38 291-330 3-41 (75)
25 PF09382 RQC: RQC domain; Int 21.6 1.2E+02 0.0026 24.2 3.5 27 124-150 46-72 (106)
26 PF11305 DUF3107: Protein of u 20.3 2.6E+02 0.0057 22.6 5.0 51 130-203 18-68 (74)
No 1
>PF04674 Phi_1: Phosphate-induced protein 1 conserved region; InterPro: IPR006766 This entry represents a family of conserved plant proteins. A conserved region in these proteins was identified in a phosphate-induced protein of unknown function [].
Probab=100.00 E-value=2.6e-127 Score=904.17 Aligned_cols=269 Identities=52% Similarity=0.959 Sum_probs=261.4
Q ss_pred ccccCCccccCCceEEEEEeecCCcchhhhHHHHHhcCCCC--CCCCcHHHHHHHhHhhhccCCCcceecEEEeeEEecC
Q 041212 47 LEYHMGPVLASPINVYIIWYGDWSLSQQSTIRDFLYSFSSP--AAYPSVADWWRTVRLYTDQTGSNITGNIVLSGEFYDT 124 (337)
Q Consensus 47 L~YH~GpvL~g~i~V~lIwYG~ftp~QksiI~DFl~SLs~~--~~~PSVs~WW~t~~~Y~~q~~~~v~~~v~l~~qv~D~ 124 (337)
|+|||||||+|+|+|||||||+|+|+||+||+|||+||+++ +++|||++||+|+++|+++++++++.+|+|++|+.|+
T Consensus 1 L~YH~GplLtg~i~V~lIWYG~ftp~QkaiI~DFl~SLs~~~~~~~PSVa~WW~t~~~Y~~~~~~~~~~~v~l~~qv~D~ 80 (273)
T PF04674_consen 1 LTYHGGPLLTGNINVYLIWYGRFTPAQKAIIRDFLRSLSSSAPAPSPSVAQWWKTTEKYYDQAGANVSGRVVLGGQVSDE 80 (273)
T ss_pred CCCCCCceeecCeeEEEEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCChhhhhhhHHhhcccccccccceEEEeeEEecC
Confidence 79999999999999999999999999999999999999986 5899999999999999999999888999999999999
Q ss_pred CCCCCCCCChHhHHHHHHHhhhccccCCCCCCceEEEEcccCccccccccccccCCCCCCcccccceeeEEEecCCCCCC
Q 041212 125 RYSHGAYLSRLDMQSIIRTAVNKRAMALNPHSGLYLVLTSHDVQVQDFCRAVCGFHYFTFPNIVGVTVPYAWVGYSGAQC 204 (337)
Q Consensus 125 ~ySlGksLs~~~i~~lv~~ai~~g~lP~d~~~gvylVLTa~DV~v~gFC~s~CG~H~~~~~s~~~~~~~YawVGNs~~qC 204 (337)
+|||||+|+++||++||++++. |+ +||||||||+||+||||||++||+|++++++..+.+++|+||||+++||
T Consensus 81 ~ySlGksL~~~~i~~lv~~~~~------~~-~gvylVLTa~DV~v~gFC~~~CG~H~~~~~~~~~~~~~YawVGns~~qC 153 (273)
T PF04674_consen 81 NYSLGKSLSRSQIQQLVAKAIP------DP-NGVYLVLTAADVAVEGFCMSRCGFHGSTFPSSVGKRLPYAWVGNSETQC 153 (273)
T ss_pred CCCCCcccCHHHHHHHHHhcCC------CC-CceEEEEecccceecccccccccCCcCCcccccccceeEEEecCccCCC
Confidence 9999999999999999999874 44 9999999999999999999999999999888778899999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcchhHHHHHHHHHHhhhcCccCCccccCCCCCCCccccccccc
Q 041212 205 PGMCAYPFAWPGYSGSSSSPPRNNEGHNIMRAPNGDVGVDGMISVLAHELAEVSSNPLVNAWYAGDDPTAPTEIADLCLG 284 (337)
Q Consensus 205 Pg~CAwPF~~P~yGP~~~~~~~~~~q~~pL~~PNGDvGvDGMvi~iA~~LAeavTNPf~ng~yqG~~~~aplEaadaC~g 284 (337)
||+||||||||+||| |++||++||||||||||||||||||||++||||+||||||+ ++||+|++|+|+|
T Consensus 154 Pg~CAwPf~~p~ygp----------~~~~l~~PNgDvGvDGMvi~iA~~LA~~~TNP~~~g~yqg~-~~aplEaa~aC~g 222 (273)
T PF04674_consen 154 PGQCAWPFHQPIYGP----------QGPPLVPPNGDVGVDGMVINIAHELAGAVTNPFGNGYYQGD-ATAPLEAADACAG 222 (273)
T ss_pred CCCCCCCCcccccCC----------CCCCccCCCCCcchhhHHHHHHHHHHHhhcCccccccccCC-CCCccchhhhccc
Confidence 999999999999999 99999999999999999999999999999999999999988 9999999999999
Q ss_pred cccCCCCCCCccceeecCC-CccccccccCCceeeeeccccCCCCCccCC
Q 041212 285 VYGSGAGGGYVGKVDKDTW-GNAYNVNGVRGRKFMVQWVWDPVKKRCYGP 333 (337)
Q Consensus 285 iyG~GaypGY~G~vlvD~~-GASyN~~G~nGRkfLlpa~WdP~t~sC~~~ 333 (337)
|||+||||||+|+|++|+. |||||++|+|||||||||||||+|++|+|+
T Consensus 223 iyG~Gaypgy~G~l~vD~~tGaSyN~~G~~gRkfLlpa~wdP~t~~C~t~ 272 (273)
T PF04674_consen 223 IYGSGAYPGYPGQLLVDPATGASYNANGVNGRKFLLPALWDPETSSCSTL 272 (273)
T ss_pred cccCCCCCCCCcceeecCCCCceeeccccCCceEEeecccCCCcCccccc
Confidence 9999999999999999977 999999999999999999999999999987
No 2
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=71.45 E-value=3.6 Score=34.28 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhhcccccchHHHh
Q 041212 10 FLLLSLSYAPSLAFSFSQSKELF 32 (337)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~ 32 (337)
|++|.|+|+.+|.+++..+++++
T Consensus 6 ~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHh
Confidence 34444455555555555555555
No 3
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=53.35 E-value=8.4 Score=35.79 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=13.2
Q ss_pred cCCCCCCceEEEEcccCc
Q 041212 150 MALNPHSGLYLVLTSHDV 167 (337)
Q Consensus 150 lP~d~~~gvylVLTa~DV 167 (337)
+|.+ .-|.+.|||+||
T Consensus 134 iP~g--~~v~~~ltS~DV 149 (217)
T TIGR01432 134 IPKD--RPVLFKLQSADT 149 (217)
T ss_pred EECC--CEEEEEEECCch
Confidence 6776 478999999998
No 4
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=45.78 E-value=14 Score=34.69 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=14.4
Q ss_pred ccCCCCCCceEEEEcccCcc
Q 041212 149 AMALNPHSGLYLVLTSHDVQ 168 (337)
Q Consensus 149 ~lP~d~~~gvylVLTa~DV~ 168 (337)
.+|.+ .-+.+.+||.||-
T Consensus 143 ~lP~~--~~v~~~~tS~DVi 160 (226)
T MTH00139 143 VLPYK--SNIRALITAADVL 160 (226)
T ss_pred EEecC--CEEEEEEecCccc
Confidence 36776 4789999999984
No 5
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=40.38 E-value=17 Score=34.37 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=14.5
Q ss_pred ccCCCCCCceEEEEcccCcc
Q 041212 149 AMALNPHSGLYLVLTSHDVQ 168 (337)
Q Consensus 149 ~lP~d~~~gvylVLTa~DV~ 168 (337)
.+|.+ .-|.+.|||.||-
T Consensus 142 ~lP~g--~pV~~~ltS~DVi 159 (226)
T TIGR01433 142 AFPVN--TPINFKITSNSVM 159 (226)
T ss_pred EEECC--CEEEEEEEECchh
Confidence 46776 4899999999985
No 6
>COG3560 FMR2 Predicted oxidoreductase related to nitroreductase [General function prediction only]
Probab=39.34 E-value=44 Score=31.54 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=29.8
Q ss_pred CCCCCCCCC--hHhHHHHHHHhhhccccCCCCCCceEEEEccc
Q 041212 125 RYSHGAYLS--RLDMQSIIRTAVNKRAMALNPHSGLYLVLTSH 165 (337)
Q Consensus 125 ~ySlGksLs--~~~i~~lv~~ai~~g~lP~d~~~gvylVLTa~ 165 (337)
-|+|||+|. +++|+++|+.+++.-+-..+++..-.|||+.+
T Consensus 16 iYaL~k~lp~~~e~i~~~v~~avk~tPsaFNSQssR~ViL~gd 58 (200)
T COG3560 16 IYALKKNLPVSDEEIKEIVKEAVKHTPSAFNSQSSRVVILFGD 58 (200)
T ss_pred HhhcCCCCCCcHHHHHHHHHHHHhcCCcccccCCceEEEEecc
Confidence 499999987 68999999999965322245555667777665
No 7
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=38.20 E-value=20 Score=32.78 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=17.3
Q ss_pred cCCCCCCceEEEEcccCccccccccc
Q 041212 150 MALNPHSGLYLVLTSHDVQVQDFCRA 175 (337)
Q Consensus 150 lP~d~~~gvylVLTa~DV~v~gFC~s 175 (337)
+|.+ .-|.+.|||.||. .+|..-
T Consensus 121 vp~g--~~v~~~~ts~DV~-Hsf~ip 143 (201)
T TIGR02866 121 VPAG--TPVRLQVTSKDVI-HSFWVP 143 (201)
T ss_pred EEcC--CEEEEEEEeCchh-hccccc
Confidence 5775 4899999999995 666543
No 8
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.01 E-value=21 Score=33.65 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=14.4
Q ss_pred ccCCCCCCceEEEEcccCcc
Q 041212 149 AMALNPHSGLYLVLTSHDVQ 168 (337)
Q Consensus 149 ~lP~d~~~gvylVLTa~DV~ 168 (337)
.+|.+ .-+.+++||.||-
T Consensus 143 vlP~~--~~v~~~~tS~DVi 160 (229)
T MTH00038 143 VLPYQ--TPIRVLVSSADVL 160 (229)
T ss_pred EEecC--eEEEEEEEECCcc
Confidence 36776 4789999999985
No 9
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=35.97 E-value=25 Score=33.10 Aligned_cols=22 Identities=23% Similarity=0.520 Sum_probs=15.9
Q ss_pred ccCCCCCCceEEEEcccCccccccc
Q 041212 149 AMALNPHSGLYLVLTSHDVQVQDFC 173 (337)
Q Consensus 149 ~lP~d~~~gvylVLTa~DV~v~gFC 173 (337)
.+|.+ .-+.+++||.|| +.+|.
T Consensus 143 ~lP~~--~~v~~~~tS~DV-iHsf~ 164 (225)
T MTH00168 143 VLPMD--SKIRVLVTSADV-LHSWT 164 (225)
T ss_pred EEecC--CEEEEEEEeCCh-hhccc
Confidence 36776 479999999999 43443
No 10
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=35.30 E-value=25 Score=33.44 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=14.4
Q ss_pred ccCCCCCCceEEEEcccCcc
Q 041212 149 AMALNPHSGLYLVLTSHDVQ 168 (337)
Q Consensus 149 ~lP~d~~~gvylVLTa~DV~ 168 (337)
.+|.+ .-+.+++||.||-
T Consensus 154 vlP~~--~~v~~~~tS~DVi 171 (240)
T MTH00023 154 VVPIN--THVRILVTGADVL 171 (240)
T ss_pred EEecC--CEEEEEEEcCCcc
Confidence 36776 4799999999984
No 11
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=32.41 E-value=28 Score=32.91 Aligned_cols=22 Identities=18% Similarity=0.569 Sum_probs=16.1
Q ss_pred ccCCCCCCceEEEEcccCccccccc
Q 041212 149 AMALNPHSGLYLVLTSHDVQVQDFC 173 (337)
Q Consensus 149 ~lP~d~~~gvylVLTa~DV~v~gFC 173 (337)
.+|.+ .-+-+.+||+|| +++|.
T Consensus 143 ~lP~~--~~v~~~~tS~DV-iHsf~ 164 (227)
T MTH00154 143 VLPMN--TQIRILITAADV-IHSWT 164 (227)
T ss_pred EEecC--CEEEEEEEcCch-hhhee
Confidence 36776 478999999999 44443
No 12
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.50 E-value=31 Score=32.43 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=17.3
Q ss_pred ccCCCCCCceEEEEcccCccccccccc
Q 041212 149 AMALNPHSGLYLVLTSHDVQVQDFCRA 175 (337)
Q Consensus 149 ~lP~d~~~gvylVLTa~DV~v~gFC~s 175 (337)
.+|.+ .-+.+.+||+||. ++|+-.
T Consensus 143 ~lP~~--~~v~~~~ts~DVi-Hsf~ip 166 (228)
T MTH00140 143 VLPYS--VDTRVLVTSADVI-HSWTVP 166 (228)
T ss_pred EEeeC--cEEEEEEEcCccc-cceecc
Confidence 46776 4789999999997 444443
No 13
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.90 E-value=30 Score=32.04 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=13.2
Q ss_pred cCCCCCCceEEEEcccCcc
Q 041212 150 MALNPHSGLYLVLTSHDVQ 168 (337)
Q Consensus 150 lP~d~~~gvylVLTa~DV~ 168 (337)
+|.+ .-+.+.|||.||.
T Consensus 120 lp~g--~~v~~~ltS~DVi 136 (194)
T MTH00047 120 LVYG--VPYHLLVTSSDVI 136 (194)
T ss_pred EeCC--CEEEeeeecCccc
Confidence 5665 4788899999984
No 14
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.17 E-value=33 Score=32.37 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=14.7
Q ss_pred ccCCCCCCceEEEEcccCcc
Q 041212 149 AMALNPHSGLYLVLTSHDVQ 168 (337)
Q Consensus 149 ~lP~d~~~gvylVLTa~DV~ 168 (337)
.+|.+ .-+-+.+||+||-
T Consensus 143 vlP~~--~~v~~~~tS~DVi 160 (227)
T MTH00117 143 VIPME--SPIRILITAEDVL 160 (227)
T ss_pred EEecC--ceEEEEEEecchh
Confidence 36776 4789999999997
No 15
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.43 E-value=36 Score=32.38 Aligned_cols=22 Identities=18% Similarity=0.502 Sum_probs=15.9
Q ss_pred ccCCCCCCceEEEEcccCccccccc
Q 041212 149 AMALNPHSGLYLVLTSHDVQVQDFC 173 (337)
Q Consensus 149 ~lP~d~~~gvylVLTa~DV~v~gFC 173 (337)
.+|.+ .-+-+.+||+|| .+.|-
T Consensus 146 ~lP~~--~~v~~~itS~DV-iHSf~ 167 (231)
T MTH00080 146 VLPCD--TNIRFCITSSDV-IHSWA 167 (231)
T ss_pred EeecC--cEEEEEEEeCcc-ccccc
Confidence 36776 489999999999 33333
No 16
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.33 E-value=38 Score=32.88 Aligned_cols=18 Identities=17% Similarity=0.444 Sum_probs=14.3
Q ss_pred ccCCCCCCceEEEEcccCcc
Q 041212 149 AMALNPHSGLYLVLTSHDVQ 168 (337)
Q Consensus 149 ~lP~d~~~gvylVLTa~DV~ 168 (337)
.+|.+ .-+-+++||+||-
T Consensus 177 vlP~~--~~v~~~ltS~DVi 194 (262)
T MTH00027 177 ILPVD--TNVRVLITAADVL 194 (262)
T ss_pred EEeeC--cEEEEEEEcCccc
Confidence 36776 4789999999984
No 17
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.36 E-value=40 Score=31.92 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=14.6
Q ss_pred ccCCCCCCceEEEEcccCcc
Q 041212 149 AMALNPHSGLYLVLTSHDVQ 168 (337)
Q Consensus 149 ~lP~d~~~gvylVLTa~DV~ 168 (337)
.+|.+ .-+-+++||+||.
T Consensus 143 vlP~~--~~v~~~~tS~DVi 160 (230)
T MTH00185 143 VVPME--SPIRVLITAEDVL 160 (230)
T ss_pred EEecC--CEEEEEEEcCccc
Confidence 36776 4789999999997
No 18
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.70 E-value=38 Score=32.12 Aligned_cols=18 Identities=17% Similarity=0.368 Sum_probs=14.5
Q ss_pred ccCCCCCCceEEEEcccCcc
Q 041212 149 AMALNPHSGLYLVLTSHDVQ 168 (337)
Q Consensus 149 ~lP~d~~~gvylVLTa~DV~ 168 (337)
.+|.+ .-+.+.+||.||.
T Consensus 147 vlP~~--~~v~~~itS~DVi 164 (234)
T MTH00051 147 IVPIQ--TQVRVLVTAADVL 164 (234)
T ss_pred EEecC--cEEEEEEEeCchh
Confidence 36776 4789999999996
No 19
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=26.54 E-value=43 Score=31.64 Aligned_cols=18 Identities=17% Similarity=0.423 Sum_probs=14.7
Q ss_pred ccCCCCCCceEEEEcccCcc
Q 041212 149 AMALNPHSGLYLVLTSHDVQ 168 (337)
Q Consensus 149 ~lP~d~~~gvylVLTa~DV~ 168 (337)
.+|.+ .-+.+.+||+||.
T Consensus 143 vlP~~--~~v~~~~tS~DVi 160 (228)
T MTH00008 143 VLPMQ--TEIRVLVTAADVI 160 (228)
T ss_pred EEecC--CEEEEEEEeCCcc
Confidence 36776 4799999999997
No 20
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=25.85 E-value=50 Score=31.24 Aligned_cols=23 Identities=13% Similarity=0.388 Sum_probs=16.8
Q ss_pred ccCCCCCCceEEEEcccCcccccccc
Q 041212 149 AMALNPHSGLYLVLTSHDVQVQDFCR 174 (337)
Q Consensus 149 ~lP~d~~~gvylVLTa~DV~v~gFC~ 174 (337)
.+|.+ .-+.+.+||+||. ++|.-
T Consensus 143 vlP~~--~~v~~~~tS~DVi-Hsf~i 165 (227)
T MTH00098 143 VLPME--MPIRMLISSEDVL-HSWAV 165 (227)
T ss_pred EecCC--CEEEEEEEECccc-ccccc
Confidence 36776 4899999999997 34433
No 21
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.41 E-value=47 Score=31.43 Aligned_cols=18 Identities=17% Similarity=0.394 Sum_probs=14.9
Q ss_pred ccCCCCCCceEEEEcccCcc
Q 041212 149 AMALNPHSGLYLVLTSHDVQ 168 (337)
Q Consensus 149 ~lP~d~~~gvylVLTa~DV~ 168 (337)
.+|.+ .-+-+.+||+||.
T Consensus 143 vlP~~--~~v~~~~tS~DVi 160 (230)
T MTH00129 143 VVPVE--SPIRVLVSAEDVL 160 (230)
T ss_pred EEecC--cEEEEEEEeCccc
Confidence 36776 4799999999997
No 22
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.00 E-value=50 Score=31.21 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=14.7
Q ss_pred ccCCCCCCceEEEEcccCcc
Q 041212 149 AMALNPHSGLYLVLTSHDVQ 168 (337)
Q Consensus 149 ~lP~d~~~gvylVLTa~DV~ 168 (337)
.+|.+ .-+.+.+||+||.
T Consensus 143 ~lP~~--~~v~~~~tS~DVi 160 (228)
T MTH00076 143 VVPME--SPIRMLITAEDVL 160 (228)
T ss_pred EEecC--CEEEEEEEecccc
Confidence 36776 4799999999996
No 23
>MTH00261 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=23.79 E-value=47 Score=26.08 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHhhhcc
Q 041212 7 PYYFLLLSLSYAPSLAF 23 (337)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ 23 (337)
-+||.+|++||.+++.+
T Consensus 11 nhyfvllllf~iliili 27 (68)
T MTH00261 11 NHYFVLLLLFFILIILI 27 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788888888777665
No 24
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=21.77 E-value=93 Score=25.42 Aligned_cols=38 Identities=21% Similarity=0.154 Sum_probs=23.4
Q ss_pred CCCCccceeecCC-CccccccccCCceeeeeccccCCCCCc
Q 041212 291 GGGYVGKVDKDTW-GNAYNVNGVRGRKFMVQWVWDPVKKRC 330 (337)
Q Consensus 291 ypGY~G~vlvD~~-GASyN~~G~nGRkfLlpa~WdP~t~sC 330 (337)
|+.-.++||+|+. |--|=+. --|.=.+-.++||+|.+-
T Consensus 3 ~~~tqrKvL~DP~SG~Yy~vd--~P~Qp~~k~lfDPETGqY 41 (75)
T PF15232_consen 3 YPATQRKVLQDPESGQYYVVD--APVQPKTKTLFDPETGQY 41 (75)
T ss_pred CCccCccEeecCCCCCEEEEe--cCCCcceeeeecCCCCcE
Confidence 5566789999996 5444332 122223445689998764
No 25
>PF09382 RQC: RQC domain; InterPro: IPR018982 This entry represents the RQC domain, which is a DNA-binding domain found only in RecQ family enzymes. RecQ family helicases can unwind G4 DNA, and play important roles at G-rich domains of the genome, including the telomeres, rDNA, and immunoglobulin switch regions. This domain has a helix-turn-helix structure and acts as a high affinity G4 DNA binding domain []. Binding of RecQ to Holliday junctions involves both the RQC and the HRDC domains.; GO: 0043140 ATP-dependent 3'-5' DNA helicase activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1OYW_A 1OYY_A 3AAF_A 2AXL_A 2V1X_B 2WWY_B.
Probab=21.65 E-value=1.2e+02 Score=24.18 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=22.5
Q ss_pred CCCCCCCCCChHhHHHHHHHhhhcccc
Q 041212 124 TRYSHGAYLSRLDMQSIIRTAVNKRAM 150 (337)
Q Consensus 124 ~~ySlGksLs~~~i~~lv~~ai~~g~l 150 (337)
+.|-.||.+++.++++|+...+..|.|
T Consensus 46 ~~yG~gk~~~~~~~~~li~~Li~~g~L 72 (106)
T PF09382_consen 46 PTYGIGKDMSKDDWERLIRQLILEGYL 72 (106)
T ss_dssp TTTTTTTTS-HHHHHHHHHHHHHTTSE
T ss_pred cccCCcccCCHHHHHHHHHHHHHcCCc
Confidence 358899999999999999999876655
No 26
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=20.26 E-value=2.6e+02 Score=22.62 Aligned_cols=51 Identities=16% Similarity=0.218 Sum_probs=31.7
Q ss_pred CCCChHhHHHHHHHhhhccccCCCCCCceEEEEcccCccccccccccccCCCCCCcccccceeeEEEecCCCCC
Q 041212 130 AYLSRLDMQSIIRTAVNKRAMALNPHSGLYLVLTSHDVQVQDFCRAVCGFHYFTFPNIVGVTVPYAWVGYSGAQ 203 (337)
Q Consensus 130 ksLs~~~i~~lv~~ai~~g~lP~d~~~gvylVLTa~DV~v~gFC~s~CG~H~~~~~s~~~~~~~YawVGNs~~q 203 (337)
...+.+++++.|..|+..+. -.|.||... |-+- ......+.|+.+|...++
T Consensus 18 s~~s~dev~~~v~~Al~~~~--------~~l~LtD~k-----------Gr~~----lVp~~~iaYVeiG~~~~r 68 (74)
T PF11305_consen 18 SDQSADEVEAAVTDALADGS--------GVLTLTDEK-----------GRRV----LVPAASIAYVEIGSEEKR 68 (74)
T ss_pred cCCCHHHHHHHHHHHHhCCC--------ceEEEEeCC-----------CCEE----EEECCcEEEEEEcCCCCC
Confidence 45788999999999996431 233343321 1010 134567899999988653
Done!