Query 041212
Match_columns 337
No_of_seqs 114 out of 177
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 07:49:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041212.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041212hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54b1 b.6.1.2 (B:91-227) Cyt 32.3 9.8 0.00072 30.1 2.1 21 150-173 54-74 (137)
2 d3cx5e2 f.23.12.1 (E:31-86) Ir 29.0 12 0.00088 26.0 1.8 16 72-87 40-55 (56)
3 d3ehbb1 b.6.1.2 (B:108-252) Cy 22.7 18 0.0013 28.6 2.0 17 150-168 57-73 (145)
4 d1cyxa_ b.6.1.2 (A:) Quinol ox 20.4 21 0.0016 28.7 2.1 22 150-174 31-52 (158)
5 d3dtub1 b.6.1.2 (B:130-281) Cy 19.1 23 0.0017 28.2 2.0 17 150-168 71-87 (152)
6 d1eb7a2 a.3.1.5 (A:165-323) Di 17.6 31 0.0023 27.3 2.5 20 68-87 119-138 (159)
7 d1ppje2 f.23.12.1 (E:1-69) Iro 14.7 34 0.0025 24.4 1.7 16 72-87 50-65 (69)
8 d1ynra1 a.3.1.1 (A:1-80) Cytoc 11.3 43 0.0032 22.6 1.4 18 67-84 62-79 (80)
9 d1c53a_ a.3.1.1 (A:) Cytochrom 11.2 33 0.0024 22.9 0.7 20 65-84 60-79 (79)
10 d1nmla2 a.3.1.5 (A:167-326) Di 11.2 48 0.0035 26.2 1.8 19 69-87 118-136 (160)
No 1
>d1v54b1 b.6.1.2 (B:91-227) Cytochrome c oxidase {Cow (Bos taurus) [TaxId: 9913]}
Probab=32.28 E-value=9.8 Score=30.09 Aligned_cols=21 Identities=14% Similarity=0.501 Sum_probs=15.8
Q ss_pred cCCCCCCceEEEEcccCccccccc
Q 041212 150 MALNPHSGLYLVLTSHDVQVQDFC 173 (337)
Q Consensus 150 lP~d~~~gvylVLTa~DV~v~gFC 173 (337)
+|.+ .-|.+.|||.|| +.+|.
T Consensus 54 lP~g--~~v~~~ltS~DV-iHsf~ 74 (137)
T d1v54b1 54 LPME--MTIRMLVSSEDV-LHSWA 74 (137)
T ss_dssp EETT--SCEEEEEEESSS-CEEEE
T ss_pred eecc--ccceeeeccCcc-ccccc
Confidence 6776 489999999999 44443
No 2
>d3cx5e2 f.23.12.1 (E:31-86) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.00 E-value=12 Score=26.02 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=13.5
Q ss_pred chhhhHHHHHhcCCCC
Q 041212 72 SQQSTIRDFLYSFSSP 87 (337)
Q Consensus 72 ~QksiI~DFl~SLs~~ 87 (337)
.-|++|.|||.+++++
T Consensus 40 ~AKstV~~FlssMSAS 55 (56)
T d3cx5e2 40 GAKSTVETFISSMTAT 55 (56)
T ss_dssp HHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHhcccc
Confidence 3589999999999864
No 3
>d3ehbb1 b.6.1.2 (B:108-252) Cytochrome c oxidase {Paracoccus denitrificans [TaxId: 266]}
Probab=22.72 E-value=18 Score=28.61 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=14.2
Q ss_pred cCCCCCCceEEEEcccCcc
Q 041212 150 MALNPHSGLYLVLTSHDVQ 168 (337)
Q Consensus 150 lP~d~~~gvylVLTa~DV~ 168 (337)
+|.+ .-|-+.|||.||.
T Consensus 57 lP~g--~~V~~~ltS~DVi 73 (145)
T d3ehbb1 57 VPVG--KKVLVQVTATDVI 73 (145)
T ss_dssp EETT--SEEEEEEEESSSC
T ss_pred Eecc--ceEEEEEEeCccc
Confidence 6776 4899999999995
No 4
>d1cyxa_ b.6.1.2 (A:) Quinol oxidase (CyoA) {Escherichia coli [TaxId: 562]}
Probab=20.38 E-value=21 Score=28.73 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=16.7
Q ss_pred cCCCCCCceEEEEcccCcccccccc
Q 041212 150 MALNPHSGLYLVLTSHDVQVQDFCR 174 (337)
Q Consensus 150 lP~d~~~gvylVLTa~DV~v~gFC~ 174 (337)
+|.+ .-|.+.|||.|| +.+|+-
T Consensus 31 lP~g--~pV~~~ltS~DV-iHsF~v 52 (158)
T d1cyxa_ 31 FPAN--TPVYFKVTSNSV-MHSFFI 52 (158)
T ss_dssp EETT--SCEEEEEEESSS-CEEEEE
T ss_pred eeCC--CeEEEEEEcCCc-chhhhh
Confidence 6776 479999999999 456654
No 5
>d3dtub1 b.6.1.2 (B:130-281) Cytochrome c oxidase {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=19.14 E-value=23 Score=28.23 Aligned_cols=17 Identities=24% Similarity=0.347 Sum_probs=13.3
Q ss_pred cCCCCCCceEEEEcccCcc
Q 041212 150 MALNPHSGLYLVLTSHDVQ 168 (337)
Q Consensus 150 lP~d~~~gvylVLTa~DV~ 168 (337)
+|.+ .-|.+.|||.||.
T Consensus 71 lP~g--~~v~~~ltS~DVi 87 (152)
T d3dtub1 71 VPVN--KTVVVQVTGADVI 87 (152)
T ss_dssp EETT--SEEEEEEEESSSC
T ss_pred EeCC--CEEEEEEecCchh
Confidence 4665 4788999999993
No 6
>d1eb7a2 a.3.1.5 (A:165-323) Di-heme cytochrome c peroxidase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=17.55 E-value=31 Score=27.31 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=17.3
Q ss_pred cCCcchhhhHHHHHhcCCCC
Q 041212 68 DWSLSQQSTIRDFLYSFSSP 87 (337)
Q Consensus 68 ~ftp~QksiI~DFl~SLs~~ 87 (337)
+.++.|++.|+.||+||+..
T Consensus 119 ~Ls~~e~~~LvaFL~sLt~~ 138 (159)
T d1eb7a2 119 QLAPDDVENIVAFLHSLSGK 138 (159)
T ss_dssp CCCHHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHhcCCC
Confidence 37789999999999999863
No 7
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.73 E-value=34 Score=24.40 Aligned_cols=16 Identities=19% Similarity=0.449 Sum_probs=13.6
Q ss_pred chhhhHHHHHhcCCCC
Q 041212 72 SQQSTIRDFLYSFSSP 87 (337)
Q Consensus 72 ~QksiI~DFl~SLs~~ 87 (337)
.-|++|.+|+.+++++
T Consensus 50 ~AK~~V~~fvssmSaS 65 (69)
T d1ppje2 50 AAKNVVSQFVSSMSAS 65 (69)
T ss_dssp HHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhcCcc
Confidence 3589999999999874
No 8
>d1ynra1 a.3.1.1 (A:1-80) Cytochrome c552 {Hydrogenobacter thermophilus [TaxId: 940]}
Probab=11.32 E-value=43 Score=22.63 Aligned_cols=18 Identities=6% Similarity=0.215 Sum_probs=16.1
Q ss_pred ecCCcchhhhHHHHHhcC
Q 041212 67 GDWSLSQQSTIRDFLYSF 84 (337)
Q Consensus 67 G~ftp~QksiI~DFl~SL 84 (337)
.++|+.|...|.+||+||
T Consensus 62 ~~lsd~ei~~l~~yi~sL 79 (80)
T d1ynra1 62 QNVTDAEAKQLAQWILSI 79 (80)
T ss_dssp CSCCHHHHHHHHHHHHTC
T ss_pred ccCCHHHHHHHHHHHHHc
Confidence 468999999999999998
No 9
>d1c53a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Desulfovibrio vulgaris, different strains [TaxId: 881]}
Probab=11.21 E-value=33 Score=22.85 Aligned_cols=20 Identities=10% Similarity=0.258 Sum_probs=16.9
Q ss_pred EeecCCcchhhhHHHHHhcC
Q 041212 65 WYGDWSLSQQSTIRDFLYSF 84 (337)
Q Consensus 65 wYG~ftp~QksiI~DFl~SL 84 (337)
|-++.|+.|...|.+||.||
T Consensus 60 ~~~~Lsd~ei~~l~aYi~sL 79 (79)
T d1c53a_ 60 LVKRYSDEEMKAMADYMSKL 79 (79)
T ss_pred HHhcCCHHHHHHHHHHHHhC
Confidence 34678999999999999987
No 10
>d1nmla2 a.3.1.5 (A:167-326) Di-heme cytochrome c peroxidase {Pseudomonas nautica [TaxId: 2743]}
Probab=11.16 E-value=48 Score=26.16 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=17.1
Q ss_pred CCcchhhhHHHHHhcCCCC
Q 041212 69 WSLSQQSTIRDFLYSFSSP 87 (337)
Q Consensus 69 ftp~QksiI~DFl~SLs~~ 87 (337)
.++.|++.|..||+||+..
T Consensus 118 Lt~~e~~~LvaFL~tLtd~ 136 (160)
T d1nmla2 118 LNNDEVKSIVAFLKTLTGN 136 (160)
T ss_dssp CCHHHHHHHHHHHGGGCCC
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 7889999999999999863
Done!